Psyllid ID: psy18032
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | 2.2.26 [Sep-21-2011] | |||||||
| Q8TDD1 | 881 | ATP-dependent RNA helicas | yes | N/A | 0.414 | 0.156 | 0.696 | 2e-63 | |
| Q8K4L0 | 874 | ATP-dependent RNA helicas | yes | N/A | 0.414 | 0.157 | 0.683 | 5e-62 | |
| Q2H0R2 | 762 | ATP-dependent RNA helicas | N/A | N/A | 0.495 | 0.216 | 0.606 | 3e-55 | |
| Q5BFU7 | 936 | ATP-dependent RNA helicas | yes | N/A | 0.531 | 0.189 | 0.584 | 2e-54 | |
| Q2UHC1 | 929 | ATP-dependent RNA helicas | yes | N/A | 0.495 | 0.177 | 0.6 | 2e-54 | |
| A6QUM7 | 900 | ATP-dependent RNA helicas | N/A | N/A | 0.489 | 0.181 | 0.612 | 2e-54 | |
| Q0CMM8 | 928 | ATP-dependent RNA helicas | N/A | N/A | 0.489 | 0.175 | 0.6 | 3e-54 | |
| A1DNG2 | 934 | ATP-dependent RNA helicas | N/A | N/A | 0.489 | 0.174 | 0.593 | 5e-54 | |
| A2QRY2 | 932 | ATP-dependent RNA helicas | yes | N/A | 0.489 | 0.174 | 0.587 | 1e-53 | |
| Q8NJM2 | 869 | ATP-dependent RNA helicas | yes | N/A | 0.489 | 0.187 | 0.581 | 2e-53 |
| >sp|Q8TDD1|DDX54_HUMAN ATP-dependent RNA helicase DDX54 OS=Homo sapiens GN=DDX54 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 243 bits (619), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 108/155 (69%), Positives = 134/155 (86%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 89 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 148
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 149 CFLLPMFERLKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMED 208
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 209 QFAALHENPDIIIATPGRLVHVAVEMSLKLQSVEY 243
|
Has RNA-dependent ATPase activity. Represses the transcriptional activity of nuclear receptors. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 132/155 (85%)
Query: 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTA 89
+KKKK GGFQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA
Sbjct: 88 NKKKKKSGGFQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTA 147
Query: 90 CFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149
CFL+PM E+LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++
Sbjct: 148 CFLLPMFERLKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMED 207
Query: 150 QFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
QFA LH +PDI++ATPGR +H+ VEM LKL S++Y
Sbjct: 208 QFAALHENPDIIIATPGRLVHVAVEMNLKLQSVEY 242
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Has RNA-dependent ATPase activity. Represses the transcriptional activity of nuclear receptors. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2H0R2|DBP10_CHAGB ATP-dependent RNA helicase DBP10 OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=DBP10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 100/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
SSN G+ K K GGFQ+ GL +L+ + ++G+ +PTPIQRKTIPLVLE RDVV
Sbjct: 69 SSNRKTGSLQSKSAKKSGGFQAMGLNSNLLRAISRKGFSVPTPIQRKTIPLVLERRDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+E+LK H+A G RA+I+SP+RELALQT K VKELGK T L++
Sbjct: 129 MARTGSGKTAAFVIPMIERLKAHSARVGARAIIMSPSRELALQTLKVVKELGKGTDLKTV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + A+PDI++ATPGRFLH+ VEM L LSS++Y
Sbjct: 189 LLVGGDSLEEQFGLMAANPDIIIATPGRFLHLKVEMSLNLSSVRY 233
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Chaetomium globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) (taxid: 306901) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5BFU7|DBP10_EMENI ATP-dependent RNA helicase dbp10 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/178 (58%), Positives = 132/178 (74%), Gaps = 1/178 (0%)
Query: 7 EDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRK 66
ED E F T S+N + N + K GGGFQ+ GL +LK + ++G+ +PTPIQRK
Sbjct: 62 EDDEAFIAEKQT-SANRKSANLKGRTVKKGGGFQAMGLNANLLKAIARKGFSVPTPIQRK 120
Query: 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126
TIP+++E +DVV MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K
Sbjct: 121 TIPVIMEDQDVVGMARTGSGKTAAFVIPMIEKLKSHSTKFGARGLILSPSRELALQTLKV 180
Query: 127 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
VKELGK T L+S L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 181 VKELGKGTDLKSVLLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIKY 238
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2UHC1|DBP10_ASPOR ATP-dependent RNA helicase dbp10 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 128/165 (77%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++G+DVV
Sbjct: 72 SANRKASNLKGRTVKKGGGFQAMGLNAHLLKAITRKGFSVPTPIQRKTIPVIMDGQDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 132 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGKGTDLKSV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 192 LLVGGDSLEEQFSLMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 236
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A6QUM7|DBP10_AJECN ATP-dependent RNA helicase DBP10 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 101/165 (61%), Positives = 129/165 (78%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
++N N + K GGGFQS GL +LK + ++G+ +PTPIQRKTIPLVL+ +DVV
Sbjct: 69 AANRKASNLRGRTVKKGGGFQSLGLNAALLKAITRKGFSVPTPIQRKTIPLVLDDQDVVG 128
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+A G RALILSP+RELALQT K VKELG+ T L+S
Sbjct: 129 MARTGSGKTAAFVIPMIEKLKSHSAKFGSRALILSPSRELALQTLKVVKELGRGTDLKSV 188
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + ++PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 189 LLVGGDSLEEQFEYMASNPDIIIATPGRFLHLKVEMSLDLSSIRY 233
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Ajellomyces capsulata (strain NAm1 / WU24) (taxid: 339724) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q0CMM8|DBP10_ASPTN ATP-dependent RNA helicase dbp10 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (540), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/165 (60%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ RDVV
Sbjct: 72 SANRKAANLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMDDRDVVG 131
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H++ G R LILSP+RELALQT K VKELGK T L+S
Sbjct: 132 MARTGSGKTAAFVIPMIEKLKSHSSKFGARGLILSPSRELALQTLKVVKELGKGTDLKSV 191
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 192 LLVGGDSLEEQFGMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 236
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1DNG2|DBP10_NEOFI ATP-dependent RNA helicase dbp10 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (538), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 98/165 (59%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 73 SANRKASNLKGRTVKKGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R LILSP+RELALQT K VKELG+ T L+S
Sbjct: 133 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLILSPSRELALQTLKVVKELGRGTDLKSV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QFA + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFAMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 237
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QRY2|DBP10_ASPNC ATP-dependent RNA helicase dbp10 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP+++E +DVV
Sbjct: 73 SANRKASNLKGRTVKKGGGFQAMGLNANLLKAITRKGFSVPTPIQRKTIPVIMEDQDVVG 132
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM++KLK+H+ G R LILSP+RELALQT K VKELGK T L++
Sbjct: 133 MARTGSGKTAAFVIPMIQKLKSHSTQVGARGLILSPSRELALQTLKVVKELGKGTDLKAV 192
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QF+ + +PDIV+ATPGRFLH+ VEM L LSSI+Y
Sbjct: 193 LLVGGDSLEEQFSMMAGNPDIVIATPGRFLHLKVEMNLDLSSIRY 237
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q8NJM2|DBP10_ASPFU ATP-dependent RNA helicase dbp10 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp10 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 127/165 (76%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S+N N + K GGGFQ+ GL +LK + ++G+ +PTPIQRKTIP++++ +DVV
Sbjct: 53 SANRKASNLKGRTVKKGGGFQAMGLSANLLKAIARKGFSVPTPIQRKTIPVIMDDQDVVG 112
Query: 80 MARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139
MARTGSGKTA F+IPM+EKLK+H+ G R L+LSP+RELALQT K VKELG+ T L+S
Sbjct: 113 MARTGSGKTAAFVIPMIEKLKSHSTKVGARGLVLSPSRELALQTLKVVKELGRGTDLKSV 172
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
L+GGDS++ QFA + +PDI++ATPGRFLH+ VEM L LSSI+Y
Sbjct: 173 LLVGGDSLEEQFAMIAGNPDIIIATPGRFLHLKVEMNLDLSSIRY 217
|
ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits and is required for the normal formation of 25S and 5.8S rRNAs. Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| 322787030 | 775 | hypothetical protein SINV_10425 [Solenop | 0.528 | 0.227 | 0.683 | 8e-67 | |
| 380029382 | 772 | PREDICTED: ATP-dependent RNA helicase DD | 0.528 | 0.227 | 0.677 | 9e-67 | |
| 340723049 | 772 | PREDICTED: LOW QUALITY PROTEIN: ATP-depe | 0.531 | 0.229 | 0.687 | 3e-66 | |
| 328781928 | 772 | PREDICTED: ATP-dependent RNA helicase DD | 0.528 | 0.227 | 0.672 | 4e-66 | |
| 242015175 | 723 | ATP-dependent RNA helicase DDX54, putati | 0.519 | 0.239 | 0.696 | 1e-65 | |
| 350423736 | 772 | PREDICTED: ATP-dependent RNA helicase DD | 0.531 | 0.229 | 0.670 | 3e-65 | |
| 195108365 | 829 | GI24146 [Drosophila mojavensis] gi|19391 | 0.549 | 0.220 | 0.661 | 3e-65 | |
| 383849107 | 770 | PREDICTED: ATP-dependent RNA helicase DD | 0.531 | 0.229 | 0.675 | 4e-65 | |
| 195389156 | 829 | GJ23450 [Drosophila virilis] gi|19415132 | 0.543 | 0.218 | 0.648 | 1e-64 | |
| 194864582 | 827 | GG14669 [Drosophila erecta] gi|190652793 | 0.531 | 0.214 | 0.621 | 3e-63 |
| >gi|322787030|gb|EFZ13254.1| hypothetical protein SINV_10425 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 123/180 (68%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
D+ GF DP T+S ND+N + KKK+ GGFQS L F VLKG+LKRGYKIPTPIQ
Sbjct: 5 DLVGFADPN-TVSDNDENNEITNIKKKICKKSGGFQSMALSFPVLKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLK A +G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKARQAKAGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT +++ +LGGDSMD+QF +H +PDI+VATPGRFLHI VEM+L+L +++Y
Sbjct: 124 KFIKELGRFTGFKASVILGGDSMDDQFNAIHGNPDIIVATPGRFLHICVEMDLQLKNVEY 183
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380029382|ref|XP_003698353.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 122/180 (67%), Positives = 148/180 (82%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
+I GF DP IS ND+ + KKK+ GGFQS L F +LKG+LKRGYKIPTPIQ
Sbjct: 5 NIVGFADPK-EISDNDEENEINNIKKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRQAKAGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT L++T +LGGD+M+NQF+ +H +PDI++ATPGRFLHI VEM+L+L++I+Y
Sbjct: 124 KFIKELGRFTGLKATLILGGDNMENQFSAIHGNPDILIATPGRFLHICVEMDLQLNNIEY 183
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340723049|ref|XP_003399911.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX54-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 123/179 (68%), Positives = 146/179 (81%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKK--KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
+I GF DP S++DN KKK K GGFQS L F +LKG+L+RGYKIPTPIQR
Sbjct: 5 NIVGFADPGEINDSDEDNEINNIKKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKTRRAKAGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELGKFT L++ +LGGDSM+NQF+ +H +PDI+VATPGRFLHI +EM+L+L++I+Y
Sbjct: 125 FIKELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEY 183
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328781928|ref|XP_397101.4| PREDICTED: ATP-dependent RNA helicase DDX54-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 257 bits (657), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/180 (67%), Positives = 146/180 (81%), Gaps = 4/180 (2%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKM---GGGFQSFGLGFEVLKGVLKRGYKIPTPIQ 64
+I GF DP IS ND+ D KKK+ GGFQS L F +LKG+LKRGYKIPTPIQ
Sbjct: 5 NIVGFADPK-EISDNDEENEINDIKKKVYKKSGGFQSMALSFPILKGILKRGYKIPTPIQ 63
Query: 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124
RKTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLK A G RALILSPTRELALQT
Sbjct: 64 RKTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKIRQAKVGARALILSPTRELALQTL 123
Query: 125 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
KF+KELG+FT L++T +LGGD+M+NQF+ +H +PDI++ATPGRFLHI +EM+L+L++I+Y
Sbjct: 124 KFIKELGRFTGLKATIILGGDNMENQFSAIHGNPDILIATPGRFLHICIEMDLQLNNIEY 183
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242015175|ref|XP_002428249.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus corporis] gi|212512810|gb|EEB15511.1| ATP-dependent RNA helicase DDX54, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 126/181 (69%), Positives = 146/181 (80%), Gaps = 8/181 (4%)
Query: 6 PEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
P +IEGF I ++ GN KKK GGGFQ+FG F VLKG+ KRGYKIPTPIQR
Sbjct: 2 PSEIEGF-----NIGEKEEVGNASTKKKN-GGGFQAFGFSFPVLKGIQKRGYKIPTPIQR 55
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL--KTHAATSGVRALILSPTRELALQT 123
K+IPL+L+GRDVVAMARTGSGKTACFL+PM EKL KT + GVRALILSPTRELALQT
Sbjct: 56 KSIPLILQGRDVVAMARTGSGKTACFLLPMFEKLINKTPKSRLGVRALILSPTRELALQT 115
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
KF+KELGKFTKL++ +LGGDSMD QF +H +PDI+VATPGRFLHI VEMELKL+S++
Sbjct: 116 VKFIKELGKFTKLKALAILGGDSMDQQFGAIHENPDIIVATPGRFLHICVEMELKLTSVE 175
Query: 184 Y 184
Y
Sbjct: 176 Y 176
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350423736|ref|XP_003493575.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/179 (67%), Positives = 146/179 (81%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKK--KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
+I GF +P S++D+ KKK K GGFQS L F +LKG+L+RGYKIPTPIQR
Sbjct: 5 NIVGFANPEEINDSDEDSEINNIKKKVCKKSGGFQSMALSFPLLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRD+VAMARTGSGKTACFLIP+ EKLKT A +G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDIVAMARTGSGKTACFLIPLFEKLKTRQAKAGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELGKFT L++ +LGGDSM+NQF+ +H +PDI+VATPGRFLHI +EM+L+L++I+Y
Sbjct: 125 FIKELGKFTDLKAAVILGGDSMENQFSAIHGNPDILVATPGRFLHICIEMDLQLNNIEY 183
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195108365|ref|XP_001998763.1| GI24146 [Drosophila mojavensis] gi|193915357|gb|EDW14224.1| GI24146 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 123/186 (66%), Positives = 151/186 (81%), Gaps = 3/186 (1%)
Query: 1 MKKKDPEDIEGFE--DPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYK 58
M+KK ++I GF D + T NDD T K KK GGFQS GLGFE+LKG+ KRGYK
Sbjct: 1 MRKKQQDEIPGFPSLDQSGTSGGNDDILKTKPKSKK-SGGFQSLGLGFELLKGITKRGYK 59
Query: 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118
+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RALILSPTRE
Sbjct: 60 VPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILSPTRE 119
Query: 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
LA+QT+KF+K+LG+F +L++ +LGGDSMD+QF+ +H PDI+VATPGRFLH+ VEM+LK
Sbjct: 120 LAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDIIVATPGRFLHLCVEMDLK 179
Query: 179 LSSIQY 184
L+SI+Y
Sbjct: 180 LNSIEY 185
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849107|ref|XP_003700188.1| PREDICTED: ATP-dependent RNA helicase DDX54-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/179 (67%), Positives = 142/179 (79%), Gaps = 2/179 (1%)
Query: 8 DIEGFEDPTVTISSNDDNGNTGDKKKKMG--GGFQSFGLGFEVLKGVLKRGYKIPTPIQR 65
DIEGF DP ++N T KKK GGFQS L + VLKG+L+RGYKIPTPIQR
Sbjct: 5 DIEGFADPEKINDDEEENEITSIKKKACSKSGGFQSMALSYPVLKGILRRGYKIPTPIQR 64
Query: 66 KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125
KTIPL LEGRDVVAMARTGSGKTACFLIP+ EKLK G RALILSPTRELALQT K
Sbjct: 65 KTIPLALEGRDVVAMARTGSGKTACFLIPLFEKLKARQTKIGARALILSPTRELALQTLK 124
Query: 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
F+KELG+FT LQ+ +LGGD+M+NQF+ +H +PDI+VATPGRFLHI +EM+L+L+SI+Y
Sbjct: 125 FIKELGRFTGLQAAVILGGDNMENQFSTIHGNPDILVATPGRFLHICIEMDLQLNSIEY 183
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195389156|ref|XP_002053243.1| GJ23450 [Drosophila virilis] gi|194151329|gb|EDW66763.1| GJ23450 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/188 (64%), Positives = 151/188 (80%), Gaps = 7/188 (3%)
Query: 1 MKKKDPEDIEGFEDPTV----TISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRG 56
M+KK ++I GF P++ T NDD K KK GGFQS GLGFE+LKG+ KRG
Sbjct: 1 MRKKQHDEIPGF--PSLEQNGTSGGNDDILKNKPKSKK-SGGFQSLGLGFELLKGITKRG 57
Query: 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116
YK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIPM EKL+ T G RALILSPT
Sbjct: 58 YKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPMFEKLQRREPTKGARALILSPT 117
Query: 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176
RELA+QT+KF+K+LG+F +L++ +LGGDSMD+QF+ +H PD++VATPGRFLH+ VEM+
Sbjct: 118 RELAVQTYKFIKDLGRFMELKTILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMD 177
Query: 177 LKLSSIQY 184
LKL+SI+Y
Sbjct: 178 LKLNSIEY 185
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194864582|ref|XP_001971010.1| GG14669 [Drosophila erecta] gi|190652793|gb|EDV50036.1| GG14669 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 153/193 (79%), Gaps = 16/193 (8%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDK---------KKKMGGGFQSFGLGFEVLKG 51
M+KK ++I GF P++ D++G T ++ KK GGFQS GLGFE++KG
Sbjct: 1 MRKKQADEIPGF--PSL-----DNDGGTSERGADILKSKSKKSKSGGFQSMGLGFELIKG 53
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
+ KRGYK+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RAL
Sbjct: 54 ITKRGYKVPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARAL 113
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
ILSPTRELA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+
Sbjct: 114 ILSPTRELAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHL 173
Query: 172 VVEMELKLSSIQY 184
VEM+LKL+SI+Y
Sbjct: 174 CVEMDLKLNSIEY 186
|
Source: Drosophila erecta Species: Drosophila erecta Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 333 | ||||||
| FB|FBgn0052344 | 827 | CG32344 [Drosophila melanogast | 0.552 | 0.222 | 0.612 | 2.9e-62 | |
| UNIPROTKB|E2QSR5 | 912 | DDX54 "Uncharacterized protein | 0.657 | 0.240 | 0.528 | 1.2e-61 | |
| UNIPROTKB|E1BGI6 | 877 | DDX54 "Uncharacterized protein | 0.438 | 0.166 | 0.705 | 2.7e-61 | |
| UNIPROTKB|Q8TDD1 | 881 | DDX54 "ATP-dependent RNA helic | 0.438 | 0.165 | 0.698 | 2.8e-60 | |
| RGD|1562539 | 906 | Ddx54 "DEAD (Asp-Glu-Ala-Asp) | 0.657 | 0.241 | 0.515 | 5.8e-59 | |
| MGI|MGI:1919240 | 874 | Ddx54 "DEAD (Asp-Glu-Ala-Asp) | 0.660 | 0.251 | 0.508 | 1.2e-58 | |
| UNIPROTKB|F1NTK9 | 822 | DDX54 "Uncharacterized protein | 0.435 | 0.176 | 0.698 | 3.2e-58 | |
| UNIPROTKB|F8VRX4 | 208 | DDX54 "ATP-dependent RNA helic | 0.438 | 0.701 | 0.698 | 4.8e-55 | |
| ZFIN|ZDB-GENE-021220-2 | 862 | ddx54 "DEAD (Asp-Glu-Ala-Asp) | 0.699 | 0.270 | 0.490 | 6.2e-52 | |
| POMBASE|SPAC31A2.07c | 848 | dbp10 "ATP-dependent RNA helic | 0.438 | 0.172 | 0.650 | 2.1e-50 |
| FB|FBgn0052344 CG32344 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 114/186 (61%), Positives = 141/186 (75%)
Query: 1 MKKKDPEDIEGFE--DPTVTISSXXXXXXXXXXXXXXXXXFQSFGLGFEVLKGVLKRGYK 58
M+KK ++I GF D S FQS GLGFE++KG+ KRGYK
Sbjct: 1 MRKKQADEIPGFPSLDNDAGTSDRGADILKSKSKKNKSGGFQSMGLGFELIKGITKRGYK 60
Query: 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118
+PTPIQRKTIPL+LEGRDVVAMA+TGSGKTACFLIP+ EKL+ T G RALILSPTRE
Sbjct: 61 VPTPIQRKTIPLILEGRDVVAMAKTGSGKTACFLIPLFEKLQRREPTKGARALILSPTRE 120
Query: 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
LA+QT+KF+KELG+F +L+S +LGGDSMD+QF+ +H PD++VATPGRFLH+ VEM+LK
Sbjct: 121 LAVQTYKFIKELGRFMELKSILVLGGDSMDSQFSAIHTCPDVIVATPGRFLHLCVEMDLK 180
Query: 179 LSSIQY 184
L+SI+Y
Sbjct: 181 LNSIEY 186
|
|
| UNIPROTKB|E2QSR5 DDX54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 582 (209.9 bits), Expect = 1.2e-61, Sum P(2) = 1.2e-61
Identities = 122/231 (52%), Positives = 167/231 (72%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFLIPM E+
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLRTALILGGDKMEDQFAALHENP 217
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY--TFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 216
DI++ATPGR +H+ VEM LKL S++Y + ++ E+G +LQ ++G +Q
Sbjct: 218 DIIIATPGRLVHVAVEMNLKLQSVEYVDSIDWLFEMGFAEQLQE--IIGRLPGGHQTVLF 275
Query: 217 HAS-PDIVV--ATPGRFLHIVVEMEL--KLSSIQLSLTDF--KQDTSRIAL 260
A+ P ++V A G +++ +++ KL+ QL + F ++DT L
Sbjct: 276 SATLPKLLVEFARAGLTEPVLIRLDVDAKLNE-QLKTSFFLVREDTKAAVL 325
|
|
| UNIPROTKB|E1BGI6 DDX54 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 572 (206.4 bits), Expect = 2.7e-61, Sum P(2) = 2.7e-61
Identities = 103/146 (70%), Positives = 127/146 (86%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFLIPM E+
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPMILDGKDVVAMARTGSGKTACFLIPMFER 157
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENP 217
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR +H+ VEM LKL S++Y
Sbjct: 218 DIIIATPGRLVHVAVEMNLKLQSVEY 243
|
|
| UNIPROTKB|Q8TDD1 DDX54 "ATP-dependent RNA helicase DDX54" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 2.8e-60, Sum P(2) = 2.8e-60
Identities = 102/146 (69%), Positives = 127/146 (86%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFL+PM E+
Sbjct: 98 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 157
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 158 LKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP 217
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR +H+ VEM LKL S++Y
Sbjct: 218 DIIIATPGRLVHVAVEMSLKLQSVEY 243
|
|
| RGD|1562539 Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 558 (201.5 bits), Expect = 5.8e-59, Sum P(2) = 5.8e-59
Identities = 120/233 (51%), Positives = 163/233 (69%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFL+PM E+
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 157 LKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENP 216
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYT-FKFVK---ELGKFTKLQSTCLLGGDSMDNQFA 214
DI++ATPGR +H+ VEM LKL S++Y F E+G +LQ ++G +Q
Sbjct: 217 DIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE--IIGRLPGGHQTV 274
Query: 215 RLHAS-PDIVV--ATPGRFLHIVVEMEL--KLSSIQLSLTDF--KQDTSRIAL 260
A+ P ++V A G +++ +++ KL+ QL + F ++DT L
Sbjct: 275 LFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNE-QLKTSFFLVREDTKTAVL 326
|
|
| MGI|MGI:1919240 Ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 118/232 (50%), Positives = 162/232 (69%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFL+PM E+
Sbjct: 97 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 156
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK +A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 157 LKARSAQTGARALILSPTRELALQTMKFTKELGKFTGLKTALILGGDKMEDQFAALHENP 216
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYT-FKFVK---ELGKFTKLQSTCLLGGDSMDNQFA 214
DI++ATPGR +H+ VEM LKL S++Y F E+G +LQ ++G +Q
Sbjct: 217 DIIIATPGRLVHVAVEMNLKLQSVEYVVFDEADRLFEMGFAEQLQE--IIGRLPGGHQTV 274
Query: 215 RLHAS-PDIVV--ATPGRFLHIVVEMEL--KLSS-IQLSLTDFKQDTSRIAL 260
A+ P ++V A G +++ +++ KL+ ++ S ++DT L
Sbjct: 275 LFSATLPKLLVEFARAGLTEPVLIRLDVDSKLNEQLKTSFLLVREDTKAAVL 326
|
|
| UNIPROTKB|F1NTK9 DDX54 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 546 (197.3 bits), Expect = 3.2e-58, Sum P(2) = 3.2e-58
Identities = 102/146 (69%), Positives = 123/146 (84%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KGV+K+GYK+PTPIQRKTIP++L GRDVVAMARTGSGKTACFL+PM E+
Sbjct: 38 FQSMGLSYPVFKGVMKKGYKVPTPIQRKTIPVILRGRDVVAMARTGSGKTACFLLPMFER 97
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK + SG RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 98 LKA-PSPSGARALILSPTRELALQTLKFTKELGKFTGLKTALVLGGDKMEDQFAALHENP 156
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR +H+ VEM LKL S++Y
Sbjct: 157 DIIIATPGRLVHVAVEMNLKLQSVEY 182
|
|
| UNIPROTKB|F8VRX4 DDX54 "ATP-dependent RNA helicase DDX54" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 102/146 (69%), Positives = 127/146 (86%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTACFL+PM E+
Sbjct: 15 FQSMGLSYPVFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFER 74
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LKTH+A +G RALILSPTRELALQT KF KELGKFT L++ +LGGD M++QFA LH +P
Sbjct: 75 LKTHSAQTGARALILSPTRELALQTLKFTKELGKFTGLKTALILGGDRMEDQFAALHENP 134
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR +H+ VEM LKL S++Y
Sbjct: 135 DIIIATPGRLVHVAVEMSLKLQSVEY 160
|
|
| ZFIN|ZDB-GENE-021220-2 ddx54 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 54" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 544 (196.6 bits), Expect = 6.2e-52, P = 6.2e-52
Identities = 123/251 (49%), Positives = 167/251 (66%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL + V KG++K+GYK+PTPIQRKTIP++L+G+DVVAMARTGSGKTA FL+P+ EK
Sbjct: 80 FQSMGLSYPVYKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTAAFLVPLFEK 139
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK A +G RALIL+PTRELALQT KF KELGKFT L++ +LGGDSMD+QFA LH +P
Sbjct: 140 LKAPQAQTGARALILTPTRELALQTMKFTKELGKFTGLRTALILGGDSMDDQFAALHENP 199
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQYT-FKFVK---ELGKFTKLQSTCLLGGDSMDNQFA 214
DI++ TPGR +H++ EM LKL S++Y F E+G +LQ D+ Q
Sbjct: 200 DIIIGTPGRLMHVIQEMNLKLQSVEYVVFDEADRLFEMGFAEQLQEIIRRLPDA--RQTL 257
Query: 215 RLHAS-PDIVV--ATPGRFLHIVVEMEL--KLSSIQLSLTDFK---QDTSRIALDLVGDS 266
A+ P ++V A G +++ +++ KLS QL L+ F D + L L+ +
Sbjct: 258 LFSATLPKLIVEFARAGLTEPVLIRLDVDTKLSE-QLKLSFFSLRLDDKPALLLHLLRN- 315
Query: 267 TEMIHKQRQSV 277
++ Q Q+V
Sbjct: 316 --VVKPQEQTV 324
|
|
| POMBASE|SPAC31A2.07c dbp10 "ATP-dependent RNA helicase Dbp10 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 478 (173.3 bits), Expect = 2.1e-50, Sum P(2) = 2.1e-50
Identities = 95/146 (65%), Positives = 115/146 (78%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
FQS GL +L+ + K+G+K PTPIQRKTIPL+LEGRDVV MARTGSGKTA F+IPM+E
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
LK+ A S RALILSP RELALQT K VK+ K T L+S ++GG S++ QF+ L P
Sbjct: 131 LKSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLLSGKP 190
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
DIVVATPGRFLH+ VEM+L+LSSI+Y
Sbjct: 191 DIVVATPGRFLHLKVEMKLELSSIEY 216
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8K4L0 | DDX54_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.6838 | 0.4144 | 0.1578 | yes | N/A |
| Q8TDD1 | DDX54_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.6967 | 0.4144 | 0.1566 | yes | N/A |
| Q6CIR0 | DBP10_KLULA | 3, ., 6, ., 4, ., 1, 3 | 0.5367 | 0.5165 | 0.1767 | yes | N/A |
| A3BT52 | RH29_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.5562 | 0.4774 | 0.1868 | yes | N/A |
| Q6FNA2 | DBP10_CANGA | 3, ., 6, ., 4, ., 1, 3 | 0.5660 | 0.4594 | 0.1578 | yes | N/A |
| A3LZT3 | DBP10_PICST | 3, ., 6, ., 4, ., 1, 3 | 0.5849 | 0.4684 | 0.1675 | yes | N/A |
| Q5BFU7 | DBP10_EMENI | 3, ., 6, ., 4, ., 1, 3 | 0.5842 | 0.5315 | 0.1891 | yes | N/A |
| A2QRY2 | DBP10_ASPNC | 3, ., 6, ., 4, ., 1, 3 | 0.5878 | 0.4894 | 0.1748 | yes | N/A |
| Q6C7X8 | DBP10_YARLI | 3, ., 6, ., 4, ., 1, 3 | 0.6184 | 0.4564 | 0.1641 | yes | N/A |
| Q12389 | DBP10_YEAST | 3, ., 6, ., 4, ., 1, 3 | 0.5506 | 0.4534 | 0.1517 | yes | N/A |
| Q54CD8 | DDX54_DICDI | 3, ., 6, ., 4, ., 1, 3 | 0.5675 | 0.4444 | 0.1356 | yes | N/A |
| O49289 | RH29_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.6190 | 0.4384 | 0.1727 | yes | N/A |
| Q4HZ42 | DBP10_GIBZE | 3, ., 6, ., 4, ., 1, 3 | 0.6026 | 0.4534 | 0.1683 | yes | N/A |
| Q2UHC1 | DBP10_ASPOR | 3, ., 6, ., 4, ., 1, 3 | 0.6 | 0.4954 | 0.1776 | yes | N/A |
| Q6BL34 | DBP10_DEBHA | 3, ., 6, ., 4, ., 1, 3 | 0.5849 | 0.4774 | 0.1706 | yes | N/A |
| Q09719 | DBP10_SCHPO | 3, ., 6, ., 4, ., 1, 3 | 0.5706 | 0.4924 | 0.1933 | yes | N/A |
| Q8NJM2 | DBP10_ASPFU | 3, ., 6, ., 4, ., 1, 3 | 0.5818 | 0.4894 | 0.1875 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 333 | |||
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-61 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 4e-49 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 2e-39 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 4e-39 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 8e-32 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 3e-29 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 1e-28 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 7e-26 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-25 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 9e-25 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-24 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 5e-24 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 1e-21 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 5e-21 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 2e-18 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 8e-11 | |
| COG1201 | 814 | COG1201, Lhr, Lhr-like helicases [General function | 2e-10 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 7e-09 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 8e-08 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-07 | |
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 1e-06 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 1e-06 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 4e-06 | |
| PRK13767 | 876 | PRK13767, PRK13767, ATP-dependent helicase; Provis | 6e-06 | |
| TIGR00614 | 470 | TIGR00614, recQ_fam, ATP-dependent DNA helicase, R | 6e-06 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 7e-06 | |
| TIGR04121 | 803 | TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA | 1e-05 | |
| TIGR03817 | 742 | TIGR03817, DECH_helic, helicase/secretion neighbor | 1e-05 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 5e-05 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 7e-05 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 1e-04 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 1e-04 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 2e-04 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 2e-04 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 4e-04 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 0.001 | |
| pfam08147 | 64 | pfam08147, DBP10CT, DBP10CT (NUC160) domain | 0.001 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 0.002 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 0.003 | |
| PRK09401 | 1176 | PRK09401, PRK09401, reverse gyrase; Reviewed | 0.003 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 0.004 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 194 bits (496), Expect = 2e-61
Identities = 73/146 (50%), Positives = 98/146 (67%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ GL E+L+G+ G++ PTPIQ + IP +L GRDV+ A+TGSGKTA FLIP+LEK
Sbjct: 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEK 60
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L G +ALIL+PTRELALQ + ++LGK T L+ + GG S+D Q +L P
Sbjct: 61 LDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGP 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
IVVATPGR L ++ +L LS ++Y
Sbjct: 121 HIVVATPGRLLDLLERGKLDLSKVKY 146
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 4e-49
Identities = 68/163 (41%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
N ++K F S GL E+L+ + G++ PTPIQ IPL+L GRDV+ A+
Sbjct: 15 AHNVALSRGEEKTPPEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQ 74
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT-KLQSTCL 141
TG+GKTA FL+P+L+K+ V ALIL+PTRELA+Q + +++LGK L+ +
Sbjct: 75 TGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVV 134
Query: 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG S+ Q L DIVVATPGR L ++ +L LS ++
Sbjct: 135 YGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVET 177
|
Length = 513 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-39
Identities = 54/122 (44%), Positives = 75/122 (61%), Gaps = 3/122 (2%)
Query: 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120
TPIQ + IP +L G+DV+ A TGSGKT FL+P+L+ L G +AL+L+PTRELA
Sbjct: 1 TPIQAQAIPAILSGKDVLVQAPTGSGKTLAFLLPILQALLPK--KGGPQALVLAPTRELA 58
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELKL 179
Q ++ +K+L K L+ L GG S+ Q +L DI+V TPGR L ++ +LKL
Sbjct: 59 EQIYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKL 118
Query: 180 SS 181
Sbjct: 119 LK 120
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 4e-39
Identities = 65/149 (43%), Positives = 99/149 (66%), Gaps = 4/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L+ V ++GY+ PTPIQ++ IP VLEGRD++A A+TG+GKTA F +P+L+
Sbjct: 3 FDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQH 62
Query: 99 LKTHAATSG----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154
L T + VRALIL+PTRELA Q + V++ K+ ++S + GG S++ Q +L
Sbjct: 63 LITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL 122
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQ 183
D++VATPGR L + + +KL ++
Sbjct: 123 RGGVDVLVATPGRLLDLEHQNAVKLDQVE 151
|
Length = 456 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 8e-32
Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 5/135 (3%)
Query: 52 VLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110
+ K G++ P Q++ I +L G RDV+ A TGSGKT L+P LE LK G R
Sbjct: 1 IEKFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGGRV 57
Query: 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFL 169
L+L PTRELA Q + +K+LG L+ L GGDS Q +L + DI+V TPGR L
Sbjct: 58 LVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLL 117
Query: 170 HIVVEMELKLSSIQY 184
++ +L LS++
Sbjct: 118 DLLENDKLSLSNVDL 132
|
Length = 201 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 3e-29
Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 10/137 (7%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+ + +GY PT IQ + IP L+GRDV+ A TG+GKTA FL+P L+
Sbjct: 3 FSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQH 62
Query: 99 L------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152
L K+ R LIL+PTRELA+Q +EL K T L + GG + N
Sbjct: 63 LLDFPRRKSGPP----RILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAE 118
Query: 153 RLHASPDIVVATPGRFL 169
+ DIVVATPGR L
Sbjct: 119 VFSENQDIVVATPGRLL 135
|
Length = 434 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 1e-28
Identities = 56/150 (37%), Positives = 79/150 (52%), Gaps = 5/150 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F L +V++ + K+G+ TPIQ +PL L GRDV A+TG+GKT FL
Sbjct: 10 FSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHY 69
Query: 99 LKTHAATSGV-----RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L +H A RALI++PTRELA+Q + L + T L+ GGD D Q
Sbjct: 70 LLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV 129
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQ 183
L + DI++ T GR + + + L +IQ
Sbjct: 130 LESGVDILIGTTGRLIDYAKQNHINLGAIQ 159
|
Length = 423 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 7e-26
Identities = 55/134 (41%), Positives = 77/134 (57%), Gaps = 7/134 (5%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + L +L + + GY TPIQ +++P +L G+DV+A A+TGSGKTA F + +L+K
Sbjct: 6 FSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQK 65
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT---KLQSTCLLGGDSMDNQFARLH 155
L V+AL+L PTRELA Q K ++ L +F K+ + C GG M Q L
Sbjct: 66 LD--VKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLC--GGVPMGPQIDSLE 121
Query: 156 ASPDIVVATPGRFL 169
I+V TPGR L
Sbjct: 122 HGAHIIVGTPGRIL 135
|
Length = 460 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 1e-25
Identities = 58/145 (40%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F GL +L+ + GY+ P+PIQ + IP +L GRDV+ MA+TGSGKTA F +P+L
Sbjct: 8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHN 67
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHAS 157
L + L+L+PTRELA+Q + + + K + + L GG D Q L
Sbjct: 68 LD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG 125
Query: 158 PDIVVATPGRFLHIVVEMELKLSSI 182
P IVV TPGR L + L LS +
Sbjct: 126 PQIVVGTPGRLLDHLKRGTLDLSKL 150
|
Length = 629 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 9e-25
Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 4/110 (3%)
Query: 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134
RDV+ A TGSGKT L+P+LE L + G + L+L+PTRELA Q + +KEL
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---GGQVLVLAPTRELANQVAERLKELFGE- 56
Query: 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
++ L+GG S+ Q L DIVV TPGR L + ++L L +
Sbjct: 57 GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDL 106
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 1e-24
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 6/158 (3%)
Query: 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92
++ F F L E++ + G+ TPIQ + + L G D + A+TG+GKTA FL
Sbjct: 83 QEGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFL 142
Query: 93 IPMLEKL-----KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM 147
I ++ +L RALI++PTREL +Q K L K+T L +GG
Sbjct: 143 ISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDF 202
Query: 148 DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQY 184
D Q +L A DI+VATPGR L E+ L ++
Sbjct: 203 DKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEV 240
|
Length = 475 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 5e-24
Identities = 55/149 (36%), Positives = 88/149 (59%), Gaps = 5/149 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S GL ++L + GY+ PTPIQ + IP L GR ++ A TGSGKTA FL+P++ +
Sbjct: 123 FSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISR 182
Query: 99 LKT--HAATSGVR---ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
T S R A++L+PTREL +Q K LGK ++ ++GGD+M Q R
Sbjct: 183 CCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYR 242
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSI 182
+ +++V TPGR + ++ + +++L ++
Sbjct: 243 IQQGVELIVGTPGRLIDLLSKHDIELDNV 271
|
Length = 518 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 95.4 bits (237), Expect = 1e-21
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 5/144 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F SF L +L G+ G+ TPIQ T+P+ L G DV A+TG+GKT FL+ ++ +
Sbjct: 11 FSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNR 70
Query: 99 LKTHAATSG-----VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153
L + A + RALIL+PTRELA+Q K + G L+ + GG D Q
Sbjct: 71 LLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQREL 130
Query: 154 LHASPDIVVATPGRFLHIVVEMEL 177
L D+++ATPGR + V + ++
Sbjct: 131 LQQGVDVIIATPGRLIDYVKQHKV 154
|
Length = 572 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 5e-21
Identities = 47/129 (36%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + L ++L+G+ G++ P+ IQ++ I +L+G D + A++G+GKTA F+I L+
Sbjct: 30 FDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQL 89
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ + +ALIL+PTRELA Q K V LG + K++ +GG + + +L A
Sbjct: 90 IDY--DLNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGV 147
Query: 159 DIVVATPGR 167
+VV TPGR
Sbjct: 148 HMVVGTPGR 156
|
Length = 401 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-18
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 48 VLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-- 105
+LK + G+ PTPIQ + P+ L GRD++ +A TGSGKT FL+P + +
Sbjct: 141 ILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRY 200
Query: 106 -SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 164
G L+L+PTRELA Q + + G +K+++T GG Q L +I++A
Sbjct: 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIAC 260
Query: 165 PGRFLHIVVEMELKLSSIQY 184
PGR + + L + Y
Sbjct: 261 PGRLIDFLESNVTNLRRVTY 280
|
Length = 545 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-11
Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV-RA 110
++K G + Q + L+ EGR+VV TGSGKT FL+P+L+ H RA
Sbjct: 63 LVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILD----HLLRDPSARA 118
Query: 111 LILSPTRELAL-QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATP 165
L+L PT LA Q + + + + GD+ + + + PDI++ P
Sbjct: 119 LLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNP 175
|
Length = 851 |
| >gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 2e-10
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT-ACFL--IPMLEKLKTHA 103
++ KR + TP QR IP + G +V+ +A TGSGKT A FL I L L
Sbjct: 10 PRVREWFKRKFTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGK 69
Query: 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG-------GDSMDNQFARLHA 156
G+ AL +SP + L + ++E + LG GD+ ++ ++
Sbjct: 70 LEDGIYALYISPLKALNNDIRRRLEEPLR--------ELGIEVAVRHGDTPQSEKQKMLK 121
Query: 157 SP-DIVVATP 165
+P I++ TP
Sbjct: 122 NPPHILITTP 131
|
Length = 814 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 7e-09
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 189 VKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ-- 245
+++LGK L+ + GG S+ Q L DIVVATPGR L ++ +L LS ++
Sbjct: 119 LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETL 178
Query: 246 -LSLTD------FKQDTSRIALDLVGDSTEMIHKQRQSV 277
L D F D +I + + RQ++
Sbjct: 179 VLDEADRMLDMGFIDDIEKI--------LKALPPDRQTL 209
|
Length = 513 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-08
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP +L GRDV+ A+TGSGKTA FL
Sbjct: 29 AIPPLLSGRDVIGQAQTGSGKTAAFL 54
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-07
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFF 323
IP +L G+DV+ A TGSGKT FL
Sbjct: 7 AIPAILSGKDVLVQAPTGSGKTLAFLLPIL 36
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IPL+L GRDV+ A+TG+GKTA FL
Sbjct: 59 AIPLILAGRDVLGQAQTGTGKTAAFL 84
|
Length = 513 |
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 62 PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121
P Q +L +V+ A TGSGKT L+ +L L G + + + P + LA
Sbjct: 35 PQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAE 90
Query: 122 QTFKFVKELGKFTKLQ-STCLLGGDSMDNQFARLHASPDIVVATPGRF 168
+ + +E + +L + GD D RL A D++V TP +
Sbjct: 91 EKY---EEFSRLEELGIRVGISTGD-YDLDDERL-ARYDVIVTTPEKL 133
|
Length = 766 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELKLSS 243
++ +K+L K L+ L GG S+ Q +L DI+V TPGR L ++ +LKL
Sbjct: 61 IYEELKKLFKILGLRVALLTGGTSLKEQARKLKKGKADILVGTPGRLLDLLRRGKLKLLK 120
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|237497 PRK13767, PRK13767, ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT-ACFL--IPMLEKL-KTHAATSGVR 109
K + TP QR IPL+ EG++V+ + TGSGKT A FL I L +L + V
Sbjct: 27 KEKFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVY 86
Query: 110 ALILSPTRELA 120
L +SP R L
Sbjct: 87 CLYVSPLRALN 97
|
Length = 876 |
| >gnl|CDD|129701 TIGR00614, recQ_fam, ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 62 PIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121
P+Q + I VL GRD + TG GK+ C+ +P L + G+ L++SP L
Sbjct: 14 PVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPAL-------CSDGI-TLVISPLISLME 65
Query: 122 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+K G L Q +
Sbjct: 66 DQVLQLKASGI-----PATFLNSSQSKEQQKNVLT 95
|
All proteins in this family for which functions are known are 3'-5' DNA-DNA helicases. These proteins are used for recombination, recombinational repair, and possibly maintenance of chromosome stability. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 470 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-06
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
++P +L G+DV+A A+TGSGKTA F
Sbjct: 34 SLPAILAGKDVIAQAKTGSGKTAAF 58
|
Length = 460 |
| >gnl|CDD|234478 TIGR04121, DEXH_lig_assoc, DEXH box helicase, DNA ligase-associated | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT-ACFLIPMLEKLKTHAATSGVRALIL 113
RG+ P P Q + LEGR + +A TGSGKT A FL +++ G+ L +
Sbjct: 10 RGWT-PRPFQLEMWAAALEGRSGLLIAPTGSGKTLAGFLPSLIDLAGPEKPKKGLHTLYI 68
Query: 114 SPTRELA 120
+P R LA
Sbjct: 69 TPLRALA 75
|
Members of this protein family are DEAD/DEAH box helicases found associated with a bacterial ATP-dependent DNA ligase, part of a four-gene system that occurs in about 12 % of prokaryotic reference genomes. The actual motif in this family is DE[VILW]H. Length = 803 |
| >gnl|CDD|234365 TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+V+ + G P Q + L GR VV T SGK+ + +P+L L A
Sbjct: 24 DVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSAL---ADDP 80
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDS--MDNQFARLHA 156
AL L+PT+ LA + V+EL +T GD+ + ++AR HA
Sbjct: 81 RATALYLAPTKALAADQLRAVRELTLRGVRPAT--YDGDTPTEERRWAREHA 130
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. Length = 742 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-05
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSS 243
+ +K+LG L+ L GGDS Q +L + DI+V TPGR L ++ +L LS+
Sbjct: 70 WAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLSN 129
Query: 244 IQL 246
+ L
Sbjct: 130 VDL 132
|
Length = 201 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 16/26 (61%), Positives = 19/26 (73%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP L+GRDV+ A TG+GKTA FL
Sbjct: 31 AIPPALDGRDVLGSAPTGTGKTAAFL 56
|
Length = 434 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLSL 248
V++ K+ ++S + GG S++ Q +L D++VATPGR L + + +KL +++ +
Sbjct: 95 VRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154
Query: 249 TD 250
D
Sbjct: 155 LD 156
|
Length = 456 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACF 318
IP +L GRDV+ MA+TGSGKTA F
Sbjct: 37 IPHLLNGRDVLGMAQTGSGKTAAF 60
|
Length = 629 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACF 318
IP VLEGRD++A A+TG+GKTA F
Sbjct: 32 IPAVLEGRDLMASAQTGTGKTAGF 55
|
Length = 456 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 52 VLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPML 96
VLK+ GY P Q++ I +L G+D + + TG GK+ C+ IP L
Sbjct: 8 VLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL 54
|
Length = 590 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
TG GKTA L+ + E+L G + LIL+PT+ L Q +F ++ + +
Sbjct: 38 TGLGKTAIALLVIAERLHKK----GGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFT 93
Query: 143 GGDSMDNQFARLHASPDIVVATP 165
G S + + A L ++VATP
Sbjct: 94 GEVSPEKR-AELWEKAKVIVATP 115
|
Length = 773 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.001
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 185 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 244
+ +KEL ++ L+GG S+ Q L DIVV TPGR L + ++L L +
Sbjct: 46 VAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKL 104
Query: 245 QL 246
L
Sbjct: 105 DL 106
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|203859 pfam08147, DBP10CT, DBP10CT (NUC160) domain | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.001
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 261 DLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGK 314
DLV D +Q+Q +R WD KKKYV + + R SG+
Sbjct: 1 DLVNDDGAGEPQQKQLMR-WDKKKKKYVNRRNG-------SKGDKKKIRGESGQ 46
|
This C terminal domain is found in the Dbp10p subfamily of hypothetical RNA helicases. Length = 64 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130
L +V + TG GKT + + +L+ L L+PT+ L LQ +F +++
Sbjct: 27 ALFKNTLVVLP-TGLGKTFIAAMVIANRLRWFGGK----VLFLAPTKPLVLQHAEFCRKV 81
Query: 131 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK 178
+ + L G+ + L A + VATP VVE +LK
Sbjct: 82 TGIPEDE-IAALTGEVRPEEREELWAKKKVFVATPQ-----VVENDLK 123
|
Length = 542 |
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 43/128 (33%), Positives = 62/128 (48%), Gaps = 18/128 (14%)
Query: 47 EVLKGVLK-RGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA 104
E +K VLK RG + P Q + + VLEG+++V T SGKT I M+ KL
Sbjct: 10 ERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL----L 65
Query: 105 TSGVRALILSPTRELA---LQTFKFVKELGKFTKLQSTCLLGG-DSMDNQFARLHASPDI 160
G +A+ L P + LA + FK ++LG L+ G DS D + DI
Sbjct: 66 REGGKAVYLVPLKALAEEKYREFKDWEKLG----LRVAMTTGDYDSTDEWLGKY----DI 117
Query: 161 VVATPGRF 168
++AT +F
Sbjct: 118 IIATAEKF 125
|
Length = 720 |
| >gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.003
Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
P +QR +L G +A TG GKT F + M L A G ++ I+ PTR L
Sbjct: 81 PWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYL----AKKGKKSYIIFPTRLL 135
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSM-----DNQFARLHASP-DIVVATPGRFLHIVV 173
Q + +++ G+ L S+ + RL DI+V T +FL
Sbjct: 136 VEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS-QFLSKNF 194
Query: 174 EMELKLSSIQYTFKFV 189
+ +L ++ F FV
Sbjct: 195 D---ELPKKKFDFVFV 207
|
Length = 1176 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFL 319
IP L GR ++ A TGSGKTA FL
Sbjct: 151 AIPAALSGRSLLVSADTGSGKTASFL 176
|
Length = 518 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| KOG0330|consensus | 476 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0328|consensus | 400 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0346|consensus | 569 | 100.0 | ||
| KOG0341|consensus | 610 | 100.0 | ||
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0335|consensus | 482 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0348|consensus | 708 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| KOG0334|consensus | 997 | 100.0 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG4284|consensus | 980 | 100.0 | ||
| KOG0337|consensus | 529 | 100.0 | ||
| KOG0344|consensus | 593 | 100.0 | ||
| KOG0350|consensus | 620 | 100.0 | ||
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| KOG0329|consensus | 387 | 100.0 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.98 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.97 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.97 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.97 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.97 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.97 | |
| KOG0349|consensus | 725 | 99.97 | ||
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.97 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.96 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.96 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.96 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.96 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.96 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.94 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.94 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.94 | |
| KOG0352|consensus | 641 | 99.94 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.92 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.92 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.91 | |
| KOG0351|consensus | 941 | 99.91 | ||
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.91 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.91 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.9 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.9 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.9 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.89 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.89 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.89 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.87 | |
| KOG0353|consensus | 695 | 99.85 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.85 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.85 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.83 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.83 | |
| KOG0354|consensus | 746 | 99.83 | ||
| KOG0952|consensus | 1230 | 99.79 | ||
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.74 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.73 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.73 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.72 | |
| KOG0947|consensus | 1248 | 99.72 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.71 | |
| KOG0948|consensus | 1041 | 99.7 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.66 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.62 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.61 | |
| KOG0951|consensus | 1674 | 99.6 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.57 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.55 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.54 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.53 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.39 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.38 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.32 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.27 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.15 | |
| KOG0950|consensus | 1008 | 99.14 | ||
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.13 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.05 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 99.04 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.02 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.0 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 98.92 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.91 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 98.9 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 98.89 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 98.85 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 98.85 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.84 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.69 | |
| KOG0951|consensus | 1674 | 98.68 | ||
| KOG0949|consensus | 1330 | 98.64 | ||
| KOG0953|consensus | 700 | 98.57 | ||
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.51 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.48 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 98.4 | |
| KOG0920|consensus | 924 | 98.36 | ||
| KOG0922|consensus | 674 | 98.32 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.3 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.24 | |
| KOG4150|consensus | 1034 | 98.23 | ||
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.19 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.17 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.08 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 98.07 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.06 | |
| KOG0923|consensus | 902 | 98.02 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.01 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 97.81 | |
| KOG0343|consensus | 758 | 97.76 | ||
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 97.76 | |
| KOG0952|consensus | 1230 | 97.67 | ||
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.65 | |
| KOG0330|consensus | 476 | 97.61 | ||
| KOG0924|consensus | 1042 | 97.6 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 97.54 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 97.49 | |
| KOG1802|consensus | 935 | 97.47 | ||
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 97.46 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.45 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.36 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 97.35 | |
| KOG0340|consensus | 442 | 97.35 | ||
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.34 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 97.3 | |
| KOG0346|consensus | 569 | 97.25 | ||
| KOG1803|consensus | 649 | 97.14 | ||
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 97.13 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 97.09 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 97.03 | |
| KOG0328|consensus | 400 | 96.94 | ||
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.85 | |
| KOG0331|consensus | 519 | 96.79 | ||
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.71 | |
| KOG0925|consensus | 699 | 96.7 | ||
| KOG0334|consensus | 997 | 96.59 | ||
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 96.55 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 96.54 | |
| KOG1123|consensus | 776 | 96.53 | ||
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 96.45 | |
| KOG0342|consensus | 543 | 96.43 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 96.42 | |
| KOG0348|consensus | 708 | 96.39 | ||
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.37 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 96.32 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 96.24 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.21 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.19 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 96.16 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.09 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 95.96 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 95.94 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 95.85 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.81 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 95.8 | |
| KOG0345|consensus | 567 | 95.75 | ||
| KOG0385|consensus | 971 | 95.69 | ||
| COG0610 | 962 | Type I site-specific restriction-modification syst | 95.65 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 95.64 | |
| KOG0744|consensus | 423 | 95.62 | ||
| KOG0338|consensus | 691 | 95.59 | ||
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 95.59 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.51 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 95.49 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 95.47 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 95.46 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 95.45 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 95.37 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 95.35 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.28 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 95.28 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.25 | |
| TIGR02785 | 1232 | addA_Gpos recombination helicase AddA, Firmicutes | 95.24 | |
| KOG0339|consensus | 731 | 95.22 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 95.21 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.2 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 95.19 | |
| KOG0335|consensus | 482 | 95.13 | ||
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 95.01 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 95.0 | |
| KOG0349|consensus | 725 | 94.97 | ||
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.93 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 94.92 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 94.92 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.85 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 94.83 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 94.76 | |
| PRK12377 | 248 | putative replication protein; Provisional | 94.76 | |
| KOG1133|consensus | 821 | 94.67 | ||
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 94.64 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.6 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 94.58 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 94.57 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 94.57 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 94.54 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 94.54 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 94.51 | |
| KOG0926|consensus | 1172 | 94.5 | ||
| PRK06921 | 266 | hypothetical protein; Provisional | 94.49 | |
| KOG0329|consensus | 387 | 94.43 | ||
| cd01126 | 384 | TraG_VirD4 The TraG/TraD/VirD4 family are bacteria | 94.4 | |
| PF02534 | 469 | T4SS-DNA_transf: Type IV secretory system Conjugat | 94.36 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 94.33 | |
| PRK13764 | 602 | ATPase; Provisional | 94.26 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 94.26 | |
| TIGR01073 | 726 | pcrA ATP-dependent DNA helicase PcrA. Designed to | 94.25 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 94.22 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 94.21 | |
| KOG0337|consensus | 529 | 94.18 | ||
| KOG1805|consensus | 1100 | 94.17 | ||
| PRK10436 | 462 | hypothetical protein; Provisional | 94.16 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 94.12 | |
| PRK06526 | 254 | transposase; Provisional | 94.11 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.11 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.09 | |
| KOG0333|consensus | 673 | 94.03 | ||
| PRK08181 | 269 | transposase; Validated | 94.01 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 93.99 | |
| KOG0326|consensus | 459 | 93.78 | ||
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 93.73 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 93.7 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 93.64 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 93.6 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 93.59 | |
| PRK13897 | 606 | type IV secretion system component VirD4; Provisio | 93.53 | |
| KOG1132|consensus | 945 | 93.48 | ||
| PRK14974 | 336 | cell division protein FtsY; Provisional | 93.43 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 93.41 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 93.34 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 93.27 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 93.23 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 93.21 | |
| KOG0344|consensus | 593 | 93.17 | ||
| PRK10867 | 433 | signal recognition particle protein; Provisional | 93.14 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 93.13 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 93.1 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 93.08 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 93.05 | |
| KOG0387|consensus | 923 | 92.9 | ||
| KOG0341|consensus | 610 | 92.83 | ||
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 92.8 | |
| PRK13850 | 670 | type IV secretion system protein VirD4; Provisiona | 92.8 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 92.77 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 92.75 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 92.73 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 92.71 | |
| PRK08116 | 268 | hypothetical protein; Validated | 92.69 | |
| PTZ00110 | 545 | helicase; Provisional | 92.69 | |
| PF12846 | 304 | AAA_10: AAA-like domain | 92.68 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 92.67 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 92.66 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 92.58 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 92.55 | |
| KOG0347|consensus | 731 | 92.51 | ||
| PRK09183 | 259 | transposase/IS protein; Provisional | 92.42 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 92.2 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 92.12 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 92.09 | |
| KOG0390|consensus | 776 | 91.95 | ||
| PTZ00424 | 401 | helicase 45; Provisional | 91.93 | |
| TIGR03743 | 634 | SXT_TraD conjugative coupling factor TraD, SXT/TOL | 91.9 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 91.76 | |
| TIGR03819 | 340 | heli_sec_ATPase helicase/secretion neighborhood AT | 91.65 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 91.65 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 91.59 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 91.54 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 91.46 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 91.42 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 91.41 | |
| KOG4439|consensus | 901 | 91.39 | ||
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 91.35 | |
| KOG1002|consensus | 791 | 91.17 | ||
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 91.07 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 91.04 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 90.96 | |
| TIGR03754 | 643 | conj_TOL_TraD conjugative coupling factor TraD, TO | 90.94 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 90.89 | |
| KOG0327|consensus | 397 | 90.84 | ||
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 90.79 | |
| KOG0332|consensus | 477 | 90.74 | ||
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 90.6 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 90.58 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 90.57 | |
| PF10412 | 386 | TrwB_AAD_bind: Type IV secretion-system coupling p | 90.52 | |
| PRK13822 | 641 | conjugal transfer coupling protein TraG; Provision | 90.47 | |
| KOG0336|consensus | 629 | 90.44 | ||
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 90.42 | |
| PRK13876 | 663 | conjugal transfer coupling protein TraG; Provision | 90.36 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 90.32 | |
| cd01127 | 410 | TrwB Bacterial conjugation protein TrwB, ATP bindi | 90.25 | |
| TIGR02767 | 623 | TraG-Ti Ti-type conjugative transfer system protie | 90.25 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 90.22 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 90.2 | |
| PRK13880 | 636 | conjugal transfer coupling protein TraG; Provision | 90.05 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 89.94 | |
| KOG0741|consensus | 744 | 89.89 | ||
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 89.88 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 89.87 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 89.76 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 89.7 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 89.62 | |
| KOG0738|consensus | 491 | 89.54 | ||
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 89.52 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 89.45 | |
| PHA02533 | 534 | 17 large terminase protein; Provisional | 89.44 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 89.28 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 89.27 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 89.14 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 88.99 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 88.94 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 88.72 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 88.64 | |
| PHA02244 | 383 | ATPase-like protein | 88.53 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 88.26 | |
| COG1875 | 436 | NYN ribonuclease and ATPase of PhoH family domains | 88.15 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 88.08 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 88.04 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 87.99 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 87.87 | |
| PRK08727 | 233 | hypothetical protein; Validated | 87.85 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 87.8 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 87.6 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 87.6 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 87.55 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 87.5 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 87.44 | |
| KOG0350|consensus | 620 | 87.41 | ||
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 87.27 | |
| KOG4284|consensus | 980 | 87.09 | ||
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 86.96 | |
| KOG0060|consensus | 659 | 86.94 | ||
| KOG1533|consensus | 290 | 86.83 | ||
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 86.59 | |
| KOG1131|consensus | 755 | 86.57 | ||
| KOG1806|consensus | 1320 | 86.52 | ||
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 86.51 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 86.48 | |
| KOG2340|consensus | 698 | 86.44 | ||
| KOG0389|consensus | 941 | 86.39 | ||
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 86.24 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 86.23 | |
| PHA02535 | 581 | P terminase ATPase subunit; Provisional | 86.22 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 86.2 | |
| KOG0745|consensus | 564 | 86.19 | ||
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 86.06 | |
| PRK13700 | 732 | conjugal transfer protein TraD; Provisional | 85.97 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 85.81 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 85.79 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 85.72 | |
| TIGR02759 | 566 | TraD_Ftype type IV conjugative transfer system cou | 85.68 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 85.66 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 85.65 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 85.62 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 85.61 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 85.38 | |
| TIGR01547 | 396 | phage_term_2 phage terminase, large subunit, PBSX | 85.38 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 85.3 | |
| PF01935 | 229 | DUF87: Domain of unknown function DUF87; InterPro: | 85.18 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 85.17 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 85.15 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 85.09 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 85.03 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 84.83 | |
| PRK14729 | 300 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 84.76 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 84.72 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 84.65 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 84.65 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 84.54 | |
| KOG0733|consensus | 802 | 84.4 | ||
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 84.37 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 84.17 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 84.17 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 84.1 | |
| KOG0384|consensus | 1373 | 83.96 | ||
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 83.88 | |
| cd01363 | 186 | Motor_domain Myosin and Kinesin motor domain. Thes | 83.73 | |
| TIGR03744 | 893 | traC_PFL_4706 conjugative transfer ATPase, PFL_470 | 83.36 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 83.04 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 82.86 | |
| COG0552 | 340 | FtsY Signal recognition particle GTPase [Intracell | 82.85 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 82.82 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 82.76 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 82.75 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 82.63 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 82.63 | |
| COG1074 | 1139 | RecB ATP-dependent exoDNAse (exonuclease V) beta s | 82.53 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 82.34 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 82.34 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 82.16 | |
| TIGR02746 | 797 | TraC-F-type type-IV secretion system protein TraC. | 82.11 | |
| PF05729 | 166 | NACHT: NACHT domain | 82.1 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 82.08 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 81.91 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 81.86 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 81.82 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 81.82 | |
| KOG1807|consensus | 1025 | 81.81 | ||
| PRK06893 | 229 | DNA replication initiation factor; Validated | 81.78 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 81.72 | |
| COG0210 | 655 | UvrD Superfamily I DNA and RNA helicases [DNA repl | 81.67 | |
| KOG0392|consensus | 1549 | 81.58 | ||
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 81.39 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 81.24 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 81.09 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 80.98 | |
| PLN02165 | 334 | adenylate isopentenyltransferase | 80.83 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 80.75 | |
| COG4185 | 187 | Uncharacterized protein conserved in bacteria [Fun | 80.61 | |
| PF02456 | 369 | Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR | 80.61 | |
| KOG0391|consensus | 1958 | 80.55 | ||
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 80.44 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 80.44 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 80.43 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 80.34 | |
| TIGR02784 | 1141 | addA_alphas double-strand break repair helicase Ad | 80.24 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 80.21 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 80.21 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 80.16 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 80.14 | |
| PF00225 | 335 | Kinesin: Kinesin motor domain; InterPro: IPR001752 | 80.09 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 80.05 |
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-55 Score=384.20 Aligned_cols=286 Identities=29% Similarity=0.418 Sum_probs=244.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.+.-.+|.+||++|++++++++.||+.||++|+++||.++.|+|+++.|.||||||.+|++|+++++... ++.++++|
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~--p~~~~~lV 134 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQE--PKLFFALV 134 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcC--CCCceEEE
Confidence 4566899999999999999999999999999999999999999999999999999999999999999984 34589999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH-hccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV-EMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~-~~~~~~~~l~~lV~---- 187 (333)
++||||||.|+.++++.++..+|+++.++.||.+...+...+.+.|||||+||+||++++. .+.+.++.++|||+
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 67789999999997
Q ss_pred ------HHHHHh---hccccceeeeecCCChHHHHHhhh----cCC-cEEEe----CCCceEEEEEecchhhh-------
Q psy18032 188 ------FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASP-DIVVA----TPGRFLHIVVEMELKLS------- 242 (333)
Q Consensus 188 ------~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~~----t~~~i~~~~~~~~~k~~------- 242 (333)
|.+++. +.+|..+|+++|||||+..+.++. ..| .+.+. |.+.+.|.|.....|.+
T Consensus 215 rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~l 294 (476)
T KOG0330|consen 215 RLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYL 294 (476)
T ss_pred hhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHH
Confidence 444444 445688999999999999998875 223 33332 23345555544433322
Q ss_pred ------hHHHHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 243 ------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 243 ------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
...+|||++..+++.++-.|+ |+.+..+|| +. -++++|++|..+|||||| +.+++|+|
T Consensus 295 l~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 295 LNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred HHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 125889999999999998887 999999999 22 467999999999999999 55666776
Q ss_pred -------cccEEEEccCC----CchhhHHHh
Q psy18032 301 -------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 301 -------~~~~~~~grtG----~g~~~~~~l 320 (333)
..|+||+|||| +|++++++.
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVt 405 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVT 405 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEe
Confidence 55999988888 898888775
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-53 Score=406.18 Aligned_cols=285 Identities=33% Similarity=0.512 Sum_probs=245.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
++|++++|++++++++.+.||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+..........+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 78999999999999999999999999999999999999999999999999999999999999874211111129999999
Q ss_pred HHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 117 RELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
||||.|+++.++.++++. ++++..++||.+...+...+..++||||+||+|+++++.++.+++++++++|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999998 89999999999999999999989999999999999999999999999999997
Q ss_pred --HHHHHhhc---cccceeeeecCCChHHHHHhhh----cCC-cEEEe------CCCceEEEEEecch---hhhhH----
Q psy18032 188 --FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----ASP-DIVVA------TPGRFLHIVVEMEL---KLSSI---- 244 (333)
Q Consensus 188 --~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~~------t~~~i~~~~~~~~~---k~~~l---- 244 (333)
|.+++..+ +|...|+++||||+++.+..+. ++| .+.+. ++..+.|.+..... |...+
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 55555544 4568999999999998887764 444 44444 56678888877642 44433
Q ss_pred -------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 245 -------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 245 -------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
++|||+++..+++++..|. |+++..+|| +.+.+++|++|+.+|||||| +++++|+|
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Viny 348 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINY 348 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEc
Confidence 5899999999999999886 999999999 33567999999999999999 55666665
Q ss_pred ------cccEEEEccCC----CchhhHHHhh
Q psy18032 301 ------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 301 ------~~~~~~~grtG----~g~~~~~~lp 321 (333)
..|+||+|||| +|.++.|+.|
T Consensus 349 D~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~ 379 (513)
T COG0513 349 DLPLDPEDYVHRIGRTGRAGRKGVAISFVTE 379 (513)
T ss_pred cCCCCHHHheeccCccccCCCCCeEEEEeCc
Confidence 55999999999 7888888876
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-52 Score=389.37 Aligned_cols=284 Identities=32% Similarity=0.518 Sum_probs=240.2
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh----cccCCceEEEE
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH----AATSGVRALIL 113 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~~lil 113 (333)
.|.+++|++++..+|+..||+.|||||.++||.++.|+|++.+|.||||||++|++|++.++... ...++|++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999999862 12458999999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+||||||.|+.+.+..++..+.+++.|++||.+...|.+.+.++++|+|+||+||.++++.+.++++++.|+|+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----HHHHHhhcc----ccceeeeecCCChHHHHHhhh----cC-CcEEEeCC------CceEEEEEecc--hhhhhH--
Q psy18032 188 ----FVKELGKFT----KLQSTCLLGGDSMDNQFARLH----AS-PDIVVATP------GRFLHIVVEME--LKLSSI-- 244 (333)
Q Consensus 188 ----~i~~l~~~~----~~~~~~l~~sAT~~~~v~~l~----~~-~~i~~~t~------~~i~~~~~~~~--~k~~~l-- 244 (333)
|.+++.+++ +..+|++++|||++.+++.++ ++ ..+.++.. .++.|.+...+ .|...+
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~ 331 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGK 331 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHH
Confidence 555555543 345699999999999998875 23 34555422 23444443222 122211
Q ss_pred ------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcc
Q psy18032 245 ------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 245 ------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
++|||+|++.|++++..|+ ++++..||| +|+ .++.|++|+..|||||| ++++
T Consensus 332 lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~ 411 (519)
T KOG0331|consen 332 LLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD 411 (519)
T ss_pred HHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc
Confidence 5899999999999999997 699999999 343 56999999999999999 6777
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
+||| ..|+||+|||| .|.|..|+-+
T Consensus 412 lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~ 447 (519)
T KOG0331|consen 412 LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTS 447 (519)
T ss_pred EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeH
Confidence 7886 55999999999 3555555443
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=370.18 Aligned_cols=274 Identities=31% Similarity=0.480 Sum_probs=230.4
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~P 115 (333)
.+|.+|+|+-.|++++..+||..|||+|..+||..+-|+|+..||-||||||++|++|+|+++...+. ....++|||+|
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 48999999999999999999999999999999999999999999999999999999999999987543 23569999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~------- 187 (333)
||||+.|++.+.++++.++++.+++++||.+.+.|...|+++|+|+|+||+||.+++.+. .+.++++..||+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875 489999999996
Q ss_pred ---HHH---HHhhccccceeeeecCCChHHHHHhhh-----cCCcEEEeCC----CceEEEEEecc----h-hh------
Q psy18032 188 ---FVK---ELGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATP----GRFLHIVVEME----L-KL------ 241 (333)
Q Consensus 188 ---~i~---~l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~----~~i~~~~~~~~----~-k~------ 241 (333)
|.+ +|-++++.++|+++|||||++++..|. ++..|.+..+ ..+.|.++..- . +.
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 444 455667899999999999999998874 3445665432 33444443211 0 00
Q ss_pred -----hhHHHHhhcchhhHHHHHH--HhcCCCcccccc---ch---HHHhhhCCCCcccccccc----------------
Q psy18032 242 -----SSIQLSLTDFKQDTSRIAL--DLVGDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD---------------- 292 (333)
Q Consensus 242 -----~~l~lif~~~~~~~~~l~~--~L~g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd---------------- 292 (333)
+.-.++|+.|++.|.++.= .|-|.++.-+|| |. +.+++|++++++||||||
T Consensus 421 ~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN 500 (691)
T KOG0338|consen 421 ITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN 500 (691)
T ss_pred HHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe
Confidence 1114789999999999874 445999999999 33 456999999999999999
Q ss_pred CCcccccccccEEEEccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTG 311 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG 311 (333)
+.||..++. |+||+|||.
T Consensus 501 y~mP~t~e~-Y~HRVGRTA 518 (691)
T KOG0338|consen 501 YAMPKTIEH-YLHRVGRTA 518 (691)
T ss_pred ccCchhHHH-HHHHhhhhh
Confidence 455555556 999999998
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=343.71 Aligned_cols=288 Identities=26% Similarity=0.478 Sum_probs=246.5
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
+.+.+...+|+++||.+++++++..+||++|+.+|++||+.+++|+|++++|++|+|||.+|.+.+|+.+.-. .+..+
T Consensus 20 s~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--~r~tQ 97 (400)
T KOG0328|consen 20 SEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--VRETQ 97 (400)
T ss_pred ccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--cceee
Confidence 3556788999999999999999999999999999999999999999999999999999999999999987762 34579
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
++|++||||||.|+.+.+..++.++|+++..+.||.+..+..+.+.-|.|++.+||+|++++++.+.+.-+.++++|+
T Consensus 98 ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 98 ALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDE 177 (400)
T ss_pred EEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhh----hcCC-cEEEe----CCCceEEEEEecc---hhhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASP-DIVVA----TPGRFLHIVVEME---LKLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~-~i~~~----t~~~i~~~~~~~~---~k~~~l 244 (333)
.+-++.+++|...|++++|||+++++.++ +.+| .+.+- |-+.+.++++..+ .|...+
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 44556678899999999999999887654 4455 44443 3335778887653 355554
Q ss_pred -----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 245 -----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 245 -----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.++||||++.++++.+.|+ ++.+..+|| +.+.|.+|++|+.+||++|| +.+.+
T Consensus 258 cdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVsl 337 (400)
T KOG0328|consen 258 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSL 337 (400)
T ss_pred HHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEE
Confidence 4899999999999999997 889999999 23567999999999999999 33333
Q ss_pred ccc-------cccEEEEccCC----CchhhHHH
Q psy18032 298 VLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 298 vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
||| ..|+|||||+| .|-++-|+
T Consensus 338 viNYDLP~nre~YIHRIGRSGRFGRkGvainFV 370 (400)
T KOG0328|consen 338 VINYDLPNNRELYIHRIGRSGRFGRKGVAINFV 370 (400)
T ss_pred EEecCCCccHHHHhhhhccccccCCcceEEEEe
Confidence 443 44999999999 45555554
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=365.02 Aligned_cols=290 Identities=28% Similarity=0.415 Sum_probs=234.9
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-----cC
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-----TS 106 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-----~~ 106 (333)
......+|++++|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+...+. ..
T Consensus 3 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 3 THLTEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred ccCCCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 3455689999999999999999999999999999999999999999999999999999999999999875332 23
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
++++|||+||++||.|+++.+..+++..++++..++||.+...+...+.++++|+|+||+++++++.++.+.+++++++|
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lV 162 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVV 162 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEE
Confidence 67999999999999999999999999999999999999998888888888899999999999999999999999999999
Q ss_pred H----------HHHHHhhc---cc--cceeeeecCCChHHHHHhhh----cCCcEEEeCC-----CceEEEEEec--chh
Q psy18032 187 K----------FVKELGKF---TK--LQSTCLLGGDSMDNQFARLH----ASPDIVVATP-----GRFLHIVVEM--ELK 240 (333)
Q Consensus 187 ~----------~i~~l~~~---~~--~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-----~~i~~~~~~~--~~k 240 (333)
+ |..++..+ ++ ...+.+++|||++..+..+. ..|..+...+ .++.+.+... ..|
T Consensus 163 iDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k 242 (423)
T PRK04837 163 LDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEK 242 (423)
T ss_pred EecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHH
Confidence 5 22333222 23 35678999999987766543 4444333222 2344433322 223
Q ss_pred hhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------C
Q psy18032 241 LSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 241 ~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~ 293 (333)
...+ .+|||++++.|+.++..|. |+++..+|| +| +.+++|++|+++|||||| +
T Consensus 243 ~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 243 MRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 2222 5899999999999999996 899999998 23 456999999999999999 5
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
+++.||+ ..|+||+|||| .|.++.|+.+
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~ 361 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACE 361 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCH
Confidence 5666665 55999999999 4666666554
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-48 Score=352.03 Aligned_cols=294 Identities=30% Similarity=0.438 Sum_probs=249.5
Q ss_pred CCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---
Q psy18032 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--- 104 (333)
Q Consensus 28 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--- 104 (333)
.+..-+.+..+|++.|++.++++.+.+.||..|+|+|..+||..+..+|+|..|.||||||++|++|++..+.+.++
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~ 315 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMAR 315 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcch
Confidence 34455788899999999999999999999999999999999999999999999999999999999999999876542
Q ss_pred ----cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccccc
Q psy18032 105 ----TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180 (333)
Q Consensus 105 ----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~ 180 (333)
..||.++|++|||+|++|+.+.-..|++..+++++.++||.+.+++--.+..+|+|+|+||++|++.+.+..+.++
T Consensus 316 ~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~ 395 (673)
T KOG0333|consen 316 LENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLN 395 (673)
T ss_pred hhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhc
Confidence 3489999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CchhhHH----------HHHHHhhc---cc-----------------------cc--eeeeecCCChHHHHHhhh----c
Q psy18032 181 SIQYTFK----------FVKELGKF---TK-----------------------LQ--STCLLGGDSMDNQFARLH----A 218 (333)
Q Consensus 181 ~l~~lV~----------~i~~l~~~---~~-----------------------~~--~~~l~~sAT~~~~v~~l~----~ 218 (333)
.+.++|+ |-+++.++ +| .+ +|+++|+|||++.++.++ .
T Consensus 396 qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr 475 (673)
T KOG0333|consen 396 QCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR 475 (673)
T ss_pred cCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh
Confidence 9999996 33333222 11 11 899999999999988875 4
Q ss_pred CC-cEEEeCC----CceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----c
Q psy18032 219 SP-DIVVATP----GRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----Q 273 (333)
Q Consensus 219 ~~-~i~~~t~----~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~ 273 (333)
.| .+.+++. +++.|.++.. +.|.+.+ .+||+|+++.|+.||+.|. |+.+..||| +
T Consensus 476 ~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQ 555 (673)
T KOG0333|consen 476 RPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQ 555 (673)
T ss_pred CCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHH
Confidence 45 4445543 4677776543 3334333 5899999999999999997 999999998 3
Q ss_pred h-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 274 R-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 274 r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
| .+++.|++|..+|||||| +++.+||| ..|+||||||| +|.+.+|+.|
T Consensus 556 Re~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~ 623 (673)
T KOG0333|consen 556 RENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTP 623 (673)
T ss_pred HHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEecc
Confidence 4 357999999999999999 66777776 55999999999 7888888765
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=340.20 Aligned_cols=286 Identities=28% Similarity=0.430 Sum_probs=239.2
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..+..|++|||.+|+.+.|+++|++.|||+|+.|||.+++|+|++.+|.||||||++|.+|+++++... +.|..++|+
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--P~giFalvl 81 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--PYGIFALVL 81 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--CCcceEEEe
Confidence 456789999999999999999999999999999999999999999999999999999999999999884 458899999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc----cccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~----~~~~~~l~~lV~-- 187 (333)
+||||||.|+.++|..+++..++++.+++||.+.-.+...|.+++|++|+||||+.+++..+ ...+.+++|+|+
T Consensus 82 TPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDE 161 (442)
T KOG0340|consen 82 TPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDE 161 (442)
T ss_pred cchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999876 236889999996
Q ss_pred --------HHHHHh---hccccceeeeecCCChHHHHHhhhcCC-----cEEE------eCCCceEEEEEecch------
Q psy18032 188 --------FVKELG---KFTKLQSTCLLGGDSMDNQFARLHASP-----DIVV------ATPGRFLHIVVEMEL------ 239 (333)
Q Consensus 188 --------~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~~~~-----~i~~------~t~~~i~~~~~~~~~------ 239 (333)
|-+++. .-+|..+|+++||||+.+.+.++...+ .... .++..+.+-|.....
T Consensus 162 ADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaY 241 (442)
T KOG0340|consen 162 ADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAY 241 (442)
T ss_pred hhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHH
Confidence 333333 345677999999999999998886322 1111 244555555443321
Q ss_pred ----------hhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc---chH---HHhhhCCCCcccccccc--------C
Q psy18032 240 ----------KLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK---QRQ---SVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 240 ----------k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r~---~l~~f~~g~~~vLvaTd--------~ 293 (333)
|...-.+||+++..+|+.++..|. ++++..+|+ |++ ++.+|+++..++|+||| +
T Consensus 242 Lv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP 321 (442)
T KOG0340|consen 242 LVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIP 321 (442)
T ss_pred HHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCC
Confidence 122336899999999999999887 778999999 443 56899999999999999 5
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.+..|+| ..|+||+|||. .|-+++|+.+
T Consensus 322 ~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 322 TVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred ceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEech
Confidence 5666776 55999999887 6778777754
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-47 Score=368.98 Aligned_cols=283 Identities=26% Similarity=0.392 Sum_probs=232.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---cc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---AT 105 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~ 105 (333)
....+++..+|++++++++++++|+++||++|||+|.++||.+++|+|++++||||||||++|++|++.++...+ ..
T Consensus 122 g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 122 GENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 445678889999999999999999999999999999999999999999999999999999999999999886532 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
.++++|||+||+|||.|+.+.++.++...++++.+++||.+...+...+.++++|+|+||++|++++.++...+++++++
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 47899999999999999999999999989999999999999888888898999999999999999999998999999999
Q ss_pred HH----------HHHHHhhc---cccceeeeecCCChHHHHHhhh----c-CC-cEEEeC-----CCceEEEEEec--ch
Q psy18032 186 FK----------FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----A-SP-DIVVAT-----PGRFLHIVVEM--EL 239 (333)
Q Consensus 186 V~----------~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~-~~-~i~~~t-----~~~i~~~~~~~--~~ 239 (333)
|+ |...+.++ ++..+|++++|||++..+..+. . .+ .+.++. ..++.+.+... ..
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~ 361 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHE 361 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechh
Confidence 95 22222222 3457899999999998876653 2 22 233322 23454444322 12
Q ss_pred hhhh-------------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc------
Q psy18032 240 KLSS-------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 240 k~~~-------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd------ 292 (333)
|... -.+|||++++.|+.++..|. |+++..+|| +| +.+++|++|+++||||||
T Consensus 362 k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGI 441 (545)
T PTZ00110 362 KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGL 441 (545)
T ss_pred HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCC
Confidence 2221 25899999999999999996 899999998 23 456999999999999999
Q ss_pred --CCcccccc-------cccEEEEccCC
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..||+ ..|+||+||||
T Consensus 442 Di~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 442 DVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 56666665 44999999999
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-48 Score=345.05 Aligned_cols=285 Identities=31% Similarity=0.437 Sum_probs=241.6
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc----ccCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA----ATSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~----~~~~~~~li 112 (333)
.+|++|||++.|++++.+.||+.||-+|+.+||.++.|+|+++.|.||||||++|++|+++.+.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 7999999999999999999999999999999999999999999999999999999999999987643 345899999
Q ss_pred EcccHHHHHHHHHHHHHHhccCC--ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH--
Q psy18032 113 LSPTRELALQTFKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK-- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~-- 187 (333)
++||+|||+|++.++.++..+.. ++++-+....+.......+...|+|+|+||++++.++..+. ..++.+.+||+
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999876654 66777776777666667778889999999999999999887 68899999996
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe------CCCceEEEEEecch--hhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA------TPGRFLHIVVEMEL--KLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~------t~~~i~~~~~~~~~--k~~~l 244 (333)
.+..+...+|...|++++|||+++.+..+. ++|.++.- .|+.+.|+.+.++. |+-.+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 333455668899999999999999998774 67777664 34567788776642 22211
Q ss_pred ------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc------------
Q psy18032 245 ------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD------------ 292 (333)
Q Consensus 245 ------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd------------ 292 (333)
.++|+|+...|.++...|. |+++..++| +...+++|..|-++++||||
T Consensus 259 yallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~ 338 (569)
T KOG0346|consen 259 YALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEV 338 (569)
T ss_pred HHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccc
Confidence 4889999999999999997 999999998 44678999999999999998
Q ss_pred ---------------------------------------CCcccccccccEEEEccCC----CchhhHHHhhh
Q psy18032 293 ---------------------------------------DTIPLVLEGRDVVAMARTG----SGKTACFLFYF 322 (333)
Q Consensus 293 ---------------------------------------~~i~~vi~~~~~~~~grtG----~g~~~~~~lp~ 322 (333)
.|+|....+ |+||+|||+ +|-+++|+.|-
T Consensus 339 kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~s-YIHRvGRTaRg~n~GtalSfv~P~ 410 (569)
T KOG0346|consen 339 KGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTS-YIHRVGRTARGNNKGTALSFVSPK 410 (569)
T ss_pred cccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHH-HHHhccccccCCCCCceEEEecch
Confidence 345555556 999999999 78899999985
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=346.81 Aligned_cols=290 Identities=31% Similarity=0.440 Sum_probs=242.5
Q ss_pred CCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh-----
Q psy18032 28 TGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH----- 102 (333)
Q Consensus 28 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~----- 102 (333)
.++.-+.+..+|.++.++..+++.|++.|+.+|||+|.+.+|.+++|+|.+..|-||||||++|++|++......
T Consensus 161 eGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lP 240 (610)
T KOG0341|consen 161 EGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLP 240 (610)
T ss_pred eCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCc
Confidence 456678889999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred -cccCCceEEEEcccHHHHHHHHHHHHHHhcc------CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 103 -AATSGVRALILSPTRELALQTFKFVKELGKF------TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 103 -~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
....||..|||||+||||.|.++.+..+... +.+++..+.||.+..++...++.+.||+|+||+||.+++.++
T Consensus 241 f~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK 320 (610)
T KOG0341|consen 241 FARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK 320 (610)
T ss_pred cccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh
Confidence 2356999999999999999999999987543 457899999999999999999999999999999999999999
Q ss_pred cccccCchhhHH----------HHHHHhh---ccccceeeeecCCChHHHHHhhh-----cCCcEEEeCCCce----EEE
Q psy18032 176 ELKLSSIQYTFK----------FVKELGK---FTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATPGRF----LHI 233 (333)
Q Consensus 176 ~~~~~~l~~lV~----------~i~~l~~---~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~~~i----~~~ 233 (333)
.+.++-++||++ |.++++. ++..++|+++|||||+..+.-++ ++..+.++..|.- .|.
T Consensus 321 ~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQe 400 (610)
T KOG0341|consen 321 IMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQE 400 (610)
T ss_pred hccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHH
Confidence 999999999997 5555554 45679999999999999887765 3445556655532 111
Q ss_pred E------------EecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc-
Q psy18032 234 V------------VEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD- 292 (333)
Q Consensus 234 ~------------~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd- 292 (333)
+ .++-+|....++|||..+.+++.+.++|- |..+..+|| +| .+++.|+.|+-+||||||
T Consensus 401 vEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDV 480 (610)
T KOG0341|consen 401 VEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDV 480 (610)
T ss_pred HHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecc
Confidence 1 11223444457999999999999998874 999999998 23 467999999999999999
Q ss_pred -------CCcccccc-------cccEEEEccCC-CchhhH
Q psy18032 293 -------DTIPLVLE-------GRDVVAMARTG-SGKTAC 317 (333)
Q Consensus 293 -------~~i~~vi~-------~~~~~~~grtG-~g~~~~ 317 (333)
++|.+||| ..|+||||||| +|++..
T Consensus 481 ASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~Gi 520 (610)
T KOG0341|consen 481 ASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGI 520 (610)
T ss_pred hhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcce
Confidence 45555555 33999999999 787764
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=357.45 Aligned_cols=283 Identities=32% Similarity=0.518 Sum_probs=230.6
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~li 112 (333)
|+|++++|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ...+++||
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999875321 22458999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
|+||++||.|+++.++.+....++++..++||.+.+.+...+.++++|+|+||++|++++....+.+++++++|+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR 160 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHH
Confidence 999999999999999999999999999999999998888888888999999999999999998899999999995
Q ss_pred -----HHHHHh---hccccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEecch--hhh------
Q psy18032 188 -----FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEMEL--KLS------ 242 (333)
Q Consensus 188 -----~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~~~--k~~------ 242 (333)
|..++. ..++...|.+++|||+++.+..+. ..+..+ +. ....+.+++...+. +..
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 222222 234567899999999988765543 444333 22 22345555543321 111
Q ss_pred -----hHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 243 -----SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 243 -----~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
.-.+|||+++..++.+++.|. ++++..+|| +.+.+++|++|+++|||||| ++++.||+
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~ 320 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNY 320 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEe
Confidence 114899999999999999996 899999998 33566999999999999999 55666775
Q ss_pred ------cccEEEEccCC----CchhhHHH
Q psy18032 301 ------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 301 ------~~~~~~~grtG----~g~~~~~~ 319 (333)
..|+||+|||| .|+++.|+
T Consensus 321 ~~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 321 ELPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred CCCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 45999999999 45665555
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-46 Score=357.19 Aligned_cols=274 Identities=29% Similarity=0.404 Sum_probs=228.2
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|++.++++|.++||+.|||+|.++||.+++|+|++++||||||||++|++|+++++... ..++++||++|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999998652 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|++||.|+.+.++.+++.. ++++..++||.+...+...+..+++|+|+||+++.+++.++.+.+++++++|+
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l 160 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRML 160 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHh
Confidence 9999999999999987754 78999999999999988888889999999999999999999999999999995
Q ss_pred ---HHHH---HhhccccceeeeecCCChHHHHHhhh----cCCcEE-Ee---CCCceEEEEEecc--hhhhhH-------
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA---TPGRFLHIVVEME--LKLSSI------- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~---t~~~i~~~~~~~~--~k~~~l------- 244 (333)
|..+ +...++...|++++|||+++.+..+. ..+..+ +. ....+.+.+.... .|...+
T Consensus 161 ~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~ 240 (460)
T PRK11776 161 DMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHH 240 (460)
T ss_pred CcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhc
Confidence 2223 33445667899999999998876654 334333 32 2234666665432 222222
Q ss_pred ----HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc----
Q psy18032 245 ----QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE---- 300 (333)
Q Consensus 245 ----~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~---- 300 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|++++||||| +++..||+
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p 320 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELA 320 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCC
Confidence 5899999999999999997 899999998 33566999999999999999 45566665
Q ss_pred ---cccEEEEccCC
Q psy18032 301 ---GRDVVAMARTG 311 (333)
Q Consensus 301 ---~~~~~~~grtG 311 (333)
..|+||+||||
T Consensus 321 ~~~~~yiqR~GRtG 334 (460)
T PRK11776 321 RDPEVHVHRIGRTG 334 (460)
T ss_pred CCHhHhhhhccccc
Confidence 45999999999
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=361.25 Aligned_cols=291 Identities=25% Similarity=0.401 Sum_probs=233.1
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhh-----c
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTH-----A 103 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 103 (333)
++.-+.+..+|++++|++.+++.|.+.||..|||+|.++||.+++|+|++++||||||||++|++|++.++... .
T Consensus 113 g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 113 GEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 44557888999999999999999999999999999999999999999999999999999999999999987542 1
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 104 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
...++++|||+||+|||.|+++.++.+++..++++..++||....++...+.++++|+|+||++|.+++.++.+.+++++
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~ 272 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVS 272 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchhee
Confidence 23578999999999999999999999998889999999999999888888888999999999999999999999999999
Q ss_pred hhHH----------HHHHHhhccc--cceeeeecCCChHHHHHhhh----cCCc-EEEeCCC----ceEEEEEecc--hh
Q psy18032 184 YTFK----------FVKELGKFTK--LQSTCLLGGDSMDNQFARLH----ASPD-IVVATPG----RFLHIVVEME--LK 240 (333)
Q Consensus 184 ~lV~----------~i~~l~~~~~--~~~~~l~~sAT~~~~v~~l~----~~~~-i~~~t~~----~i~~~~~~~~--~k 240 (333)
++|+ |.+++..++. ...|++++|||+++.+..+. ..+. +.++.+. .+.+.+.... .+
T Consensus 273 ~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k 352 (518)
T PLN00206 273 VLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQK 352 (518)
T ss_pred EEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhH
Confidence 9995 2222222221 35799999999998877654 3332 3333322 2344433221 11
Q ss_pred hh-------------hHHHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCCCCcccccccc------
Q psy18032 241 LS-------------SIQLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 241 ~~-------------~l~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd------ 292 (333)
.. ...+|||+++..++.+++.|. |+++..+|| +++.+++|++|+++||||||
T Consensus 353 ~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGi 432 (518)
T PLN00206 353 KQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGV 432 (518)
T ss_pred HHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccC
Confidence 11 125899999999999998884 889999998 33567999999999999998
Q ss_pred --CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
+++..||+ ..|+||+|||| .|.+..|+
T Consensus 433 Dip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~ 472 (518)
T PLN00206 433 DLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFV 472 (518)
T ss_pred CcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEE
Confidence 45556664 45999999999 34444443
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=360.21 Aligned_cols=285 Identities=28% Similarity=0.406 Sum_probs=229.2
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceE
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRA 110 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~ 110 (333)
.++|++|+|+++++++|.++||..|||+|.++||.+++|+|++++||||||||++|++|+++++.... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 35799999999999999999999999999999999999999999999999999999999999986532 1235799
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~-- 187 (333)
|||+||+||+.|+++.+..++...++++..++|+.+...+...+.++++|||+||++|++++.+. .+.++.++++|+
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDE 167 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDE 167 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecC
Confidence 99999999999999999999999999999999999998888888888999999999999998775 467888888885
Q ss_pred --------HHHHHhhc---ccc--ceeeeecCCChHHHHHhhh----cCCc-EEEe----CCCceEEEEEecc--hhhhh
Q psy18032 188 --------FVKELGKF---TKL--QSTCLLGGDSMDNQFARLH----ASPD-IVVA----TPGRFLHIVVEME--LKLSS 243 (333)
Q Consensus 188 --------~i~~l~~~---~~~--~~~~l~~sAT~~~~v~~l~----~~~~-i~~~----t~~~i~~~~~~~~--~k~~~ 243 (333)
|..++..+ ++. ..|+++||||++..+..+. ..+. +.+. +..++.+.+.... .|...
T Consensus 168 Ah~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 168 ADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHH
Confidence 33333322 332 6799999999987765543 3343 3332 2334555554332 22211
Q ss_pred -----------HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcc
Q psy18032 244 -----------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 244 -----------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
..+|||++++.|+.+++.|. ++.+..+|| +.+.+++|++|+++|||||| +++.
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~ 327 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVK 327 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCC
Confidence 25899999999999999997 899999998 23556999999999999999 4455
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
.||+ ..|+||+||+| .|.++.|+.
T Consensus 328 ~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~ 362 (572)
T PRK04537 328 YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFAC 362 (572)
T ss_pred EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEec
Confidence 6665 44999999999 466666653
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=363.03 Aligned_cols=285 Identities=29% Similarity=0.448 Sum_probs=233.2
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
..++|++++|++.++++|.++||.+|||+|.++||.+++|+|++++||||||||++|++|+++.+... ..++++||++
T Consensus 4 ~~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~ 81 (629)
T PRK11634 4 FETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLA 81 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEe
Confidence 45679999999999999999999999999999999999999999999999999999999999998652 3467999999
Q ss_pred ccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 115 PTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
||++||.|+++.+..+.+.. ++.+..++||.+...+.+.+..+++|+|+||+++++++..+.+.+++++++|+
T Consensus 82 PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m 161 (629)
T PRK11634 82 PTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161 (629)
T ss_pred CcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH
Confidence 99999999999999987664 79999999999999988888889999999999999999999999999999996
Q ss_pred ----HHHHHh---hccccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEec--chhhhh------
Q psy18032 188 ----FVKELG---KFTKLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEM--ELKLSS------ 243 (333)
Q Consensus 188 ----~i~~l~---~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~--~~k~~~------ 243 (333)
|.+++. ..++...|+++||||+++.+..+. ..+..+ +. +...+.+.+... ..|...
T Consensus 162 l~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~ 241 (629)
T PRK11634 162 LRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLE 241 (629)
T ss_pred hhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHH
Confidence 333333 334667899999999998776543 344333 22 223455555432 123222
Q ss_pred -----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--
Q psy18032 244 -----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-- 300 (333)
Q Consensus 244 -----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-- 300 (333)
..+|||+++..+++++..|. |+.+..+|| +.+.+++|++|+++|||||| +++.+||+
T Consensus 242 ~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d 321 (629)
T PRK11634 242 AEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYD 321 (629)
T ss_pred hcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeC
Confidence 25899999999999999996 899999998 23567999999999999999 45566664
Q ss_pred -----cccEEEEccCC----CchhhHHHhh
Q psy18032 301 -----GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 301 -----~~~~~~~grtG----~g~~~~~~lp 321 (333)
..|+||+|||| .|+++.|+.+
T Consensus 322 ~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~ 351 (629)
T PRK11634 322 IPMDSESYVHRIGRTGRAGRAGRALLFVEN 351 (629)
T ss_pred CCCCHHHHHHHhccccCCCCcceEEEEech
Confidence 45999999999 4666666543
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=338.71 Aligned_cols=289 Identities=28% Similarity=0.358 Sum_probs=239.0
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~ 110 (333)
.-....|+++.|++..+++++++||.++|++|+.+|+.++.|+|+++.|.||||||+||++|+++.+...+ ...+..+
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~v 157 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGV 157 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeE
Confidence 44467899999999999999999999999999999999999999999999999999999999999988653 3457789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH-
Q psy18032 111 LILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~- 187 (333)
||++||||||.|++.+++++.++. ++.+..+.||.+.....+.+.++|+|+|+||+||++++++.. +-.+.++++|+
T Consensus 158 lIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlD 237 (543)
T KOG0342|consen 158 LIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLD 237 (543)
T ss_pred EEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEee
Confidence 999999999999999999999887 899999999999988888888899999999999999998754 55677788886
Q ss_pred ---------HHHHH---hhccccceeeeecCCChHHHHHhhh-----cCCcEEE-------eCCCceEEEEEecc--hhh
Q psy18032 188 ---------FVKEL---GKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVV-------ATPGRFLHIVVEME--LKL 241 (333)
Q Consensus 188 ---------~i~~l---~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~-------~t~~~i~~~~~~~~--~k~ 241 (333)
|.+++ .+++|.++|+++||||++..++.++ .++..+- .|..++.|.++-.. ..+
T Consensus 238 EADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 238 EADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred cchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 55554 4557899999999999999998875 2232222 14456777554322 221
Q ss_pred hh------------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------C
Q psy18032 242 SS------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------D 293 (333)
Q Consensus 242 ~~------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~ 293 (333)
.. -.+|||.|..-+..+++.|. .+++..+|| +| ....+|++-+..||+||| +
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P 397 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIP 397 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCC
Confidence 11 14889999999999999987 889999999 34 345999999999999999 6
Q ss_pred Ccccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 294 TIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 294 ~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
++++|++ ..|+||+|||| .|+++.++.|
T Consensus 398 ~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p 436 (543)
T KOG0342|consen 398 DVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAP 436 (543)
T ss_pred CceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeCh
Confidence 7777776 66999999999 4666655543
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=343.43 Aligned_cols=293 Identities=27% Similarity=0.400 Sum_probs=243.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------c-
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA------T- 105 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~- 105 (333)
+....+|.+-.+.+.+...++..||..|||+|+.+||.+..|+|+++||+||||||.+|++|++..+..... .
T Consensus 70 p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~ 149 (482)
T KOG0335|consen 70 PPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGG 149 (482)
T ss_pred CCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCC
Confidence 455569999999999999999999999999999999999999999999999999999999999999887421 1
Q ss_pred -CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchh
Q psy18032 106 -SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184 (333)
Q Consensus 106 -~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~ 184 (333)
..|+++|++|||||+.|+++..+++.-..+++++.++||.+...+.+.+.++|+|+|+||+||.++++.+.+.++.++|
T Consensus 150 ~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~ 229 (482)
T KOG0335|consen 150 GVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKF 229 (482)
T ss_pred CCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcE
Confidence 2489999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred hHH-----------HHHHHhhccc-------cceeeeecCCChHHHHHhhhc-----C-CcEEE----eCCCceEEEEEe
Q psy18032 185 TFK-----------FVKELGKFTK-------LQSTCLLGGDSMDNQFARLHA-----S-PDIVV----ATPGRFLHIVVE 236 (333)
Q Consensus 185 lV~-----------~i~~l~~~~~-------~~~~~l~~sAT~~~~v~~l~~-----~-~~i~~----~t~~~i~~~~~~ 236 (333)
+|+ |.++|.++.. ..+|+++||||++..+..+.. . ..+-+ .+++++.|-+..
T Consensus 230 ~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~ 309 (482)
T KOG0335|consen 230 LVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILF 309 (482)
T ss_pred EEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeee
Confidence 997 3444444421 378999999999998877642 1 11111 355667666654
Q ss_pred cc--hhhh---------------h-----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcc
Q psy18032 237 ME--LKLS---------------S-----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKK 286 (333)
Q Consensus 237 ~~--~k~~---------------~-----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~ 286 (333)
.. .|-. . ..++||.+++.|+.++..|. ++++..+|| +.+.++.|++|++.
T Consensus 310 V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p 389 (482)
T KOG0335|consen 310 VNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAP 389 (482)
T ss_pred ecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcc
Confidence 32 1111 1 35899999999999999997 999999999 23578999999999
Q ss_pred cccccc--------CCcccccc-------cccEEEEccCCCchhhHHHhhhhhh
Q psy18032 287 YVQVTD--------DTIPLVLE-------GRDVVAMARTGSGKTACFLFYFFFR 325 (333)
Q Consensus 287 vLvaTd--------~~i~~vi~-------~~~~~~~grtG~g~~~~~~lp~~~~ 325 (333)
+||||+ +.+.+||+ ..|+|||||||+++..+++.+++..
T Consensus 390 vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~ 443 (482)
T KOG0335|consen 390 VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNE 443 (482)
T ss_pred eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEecc
Confidence 999998 44455565 5599999999977777777777763
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=328.11 Aligned_cols=281 Identities=29% Similarity=0.470 Sum_probs=239.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+...-....||++.|..+++..+.+.||++|+|+|.++||..+.|+|+++-|..|+|||.+|++|+++.+... ....
T Consensus 77 ~DVt~TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~I 154 (459)
T KOG0326|consen 77 EDVTATKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVI 154 (459)
T ss_pred cccccccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccce
Confidence 33344555789999999999999999999999999999999999999999999999999999999999999884 3478
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK- 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~- 187 (333)
+++|++||||||.|..+.+.++++.+++++...+||++..+..-.+.+..|++|+||+|++++..++.-.+++..++|+
T Consensus 155 Q~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~D 234 (459)
T KOG0326|consen 155 QAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMD 234 (459)
T ss_pred eEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEec
Confidence 9999999999999999999999999999999999999999988888889999999999999999999999999999996
Q ss_pred ------------HHHHHhhccccceeeeecCCChHHHHHhhh----cCC-cEEE---eCCCceEEEEEecc--hhhhhH-
Q psy18032 188 ------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASP-DIVV---ATPGRFLHIVVEME--LKLSSI- 244 (333)
Q Consensus 188 ------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~-~i~~---~t~~~i~~~~~~~~--~k~~~l- 244 (333)
-++++..++|..+|.+++|||++-.+..+. +.| .|.. -|+..+.|+|-..+ .|..-+
T Consensus 235 EADKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLn 314 (459)
T KOG0326|consen 235 EADKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLN 314 (459)
T ss_pred hhhhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHH
Confidence 455566778999999999999987665543 444 3333 25566666664432 333322
Q ss_pred ----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcccc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIPLV 298 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~~v 298 (333)
.+||||+..++|-+|..+. |+++-++|+ .|. ...+|++|+++.||||| ..+..|
T Consensus 315 tLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 315 TLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 4899999999999999886 999999998 343 45999999999999999 445556
Q ss_pred cc-------cccEEEEccCC
Q psy18032 299 LE-------GRDVVAMARTG 311 (333)
Q Consensus 299 i~-------~~~~~~~grtG 311 (333)
|| ..|+|||||+|
T Consensus 395 INFDfpk~aEtYLHRIGRsG 414 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSG 414 (459)
T ss_pred EecCCCCCHHHHHHHccCCc
Confidence 65 55999999999
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=344.19 Aligned_cols=275 Identities=28% Similarity=0.439 Sum_probs=224.3
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCceEEEEc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGVRALILS 114 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~lil~ 114 (333)
++|++++|++.++++|.++||..|+++|.++||.++.|+|++++||||+|||++|++|+++.+...+. ..++++||++
T Consensus 1 ~~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 1 TTFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47999999999999999999999999999999999999999999999999999999999999875322 2357999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
||++|+.|+++.++.++...++++..++||.....+...+.++++|+|+||++|++++..+.+.+++++++|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 9999999999999999999999999999999998888888888999999999999999999899999999995
Q ss_pred ---HHHH---HhhccccceeeeecCCChHH-HHHhh----hcCCcEEEeCC-----CceEEEEEecc---hhhhhH----
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDN-QFARL----HASPDIVVATP-----GRFLHIVVEME---LKLSSI---- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~-~v~~l----~~~~~i~~~t~-----~~i~~~~~~~~---~k~~~l---- 244 (333)
|..+ +....+...|+++||||++. .+..+ ...+..+...+ ..+.+++...+ .+...+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 1222 22223456899999999963 34333 23443332222 23555554332 222221
Q ss_pred -------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-
Q psy18032 245 -------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE- 300 (333)
Q Consensus 245 -------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~- 300 (333)
.+|||++++.++.++..|. |+++..+|| +.+.+++|++|+++|||||| ++++.||+
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~ 320 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINF 320 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEE
Confidence 4899999999999999996 889999998 33566999999999999999 56666665
Q ss_pred ------cccEEEEccCC
Q psy18032 301 ------GRDVVAMARTG 311 (333)
Q Consensus 301 ------~~~~~~~grtG 311 (333)
..|+||+||||
T Consensus 321 d~p~s~~~yiqr~GR~g 337 (434)
T PRK11192 321 DMPRSADTYLHRIGRTG 337 (434)
T ss_pred CCCCCHHHHhhcccccc
Confidence 44999999999
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=328.68 Aligned_cols=285 Identities=29% Similarity=0.376 Sum_probs=234.3
Q ss_pred CcccccCC--CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--c-CCceEE
Q psy18032 37 GGFQSFGL--GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--T-SGVRAL 111 (333)
Q Consensus 37 ~~f~~~~l--~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~-~~~~~l 111 (333)
.+|++++. ++++++++.++||+..||+|..+||.+++++||.+.|+||||||+||++|+++.+.+... + ...-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 57888874 499999999999999999999999999999999999999999999999999999954322 1 124799
Q ss_pred EEcccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhcc--ccccCchhhHH
Q psy18032 112 ILSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEME--LKLSSIQYTFK 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~ 187 (333)
||+|||||+.|+.+++..|... .++.+.+++||.+.++....+.+ +++|+|||||||.+++.+.. ++++++.+||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999998776 78999999999988888777765 79999999999999998854 45669999996
Q ss_pred ----------HHHH---HhhccccceeeeecCCChHHHHHhhh-----cCCcEEEe------CCCceEEEEEec--chhh
Q psy18032 188 ----------FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVA------TPGRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~------t~~~i~~~~~~~--~~k~ 241 (333)
|... |...+|.++.+-+||||+..++..+. ++..|.+. ||.++...|... ..|.
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~ 243 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKL 243 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHH
Confidence 3333 44557889999999999999988874 44455553 676665555443 4455
Q ss_pred hhH-----------HHHhhcchhhHHHHHHHhc----CCCcccccc-----ch-HHHhhhCCCCcccccccc--------
Q psy18032 242 SSI-----------QLSLTDFKQDTSRIALDLV----GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD-------- 292 (333)
Q Consensus 242 ~~l-----------~lif~~~~~~~~~l~~~L~----g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd-------- 292 (333)
..+ .+||..|...+++....+. +.+...+|| .| ..++.|.+.+-.+|+|||
T Consensus 244 ~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDi 323 (567)
T KOG0345|consen 244 SQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDI 323 (567)
T ss_pred HHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCC
Confidence 433 3677788888888876553 667889999 24 456999999999999999
Q ss_pred CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 293 DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 293 ~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
++|+.|++ +.++||+|||| .|.++.|++|
T Consensus 324 p~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 324 PGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNP 363 (567)
T ss_pred CCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecc
Confidence 78888886 66999999999 6999999987
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=333.69 Aligned_cols=286 Identities=31% Similarity=0.480 Sum_probs=243.1
Q ss_pred CCCCcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-
Q psy18032 26 GNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA- 104 (333)
Q Consensus 26 ~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~- 104 (333)
.-...+-+++.++|+.+|+++.|..+..+.-|..|||+|.+++|..+.|+|++.+|.||||||.+|++|++.+++..+.
T Consensus 212 rv~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL 291 (731)
T KOG0339|consen 212 RVSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPEL 291 (731)
T ss_pred eeccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhh
Confidence 3445566789999999999999999999999999999999999999999999999999999999999999999987542
Q ss_pred --cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCc
Q psy18032 105 --TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 105 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..+|.+||++|||+||.|++.++++|++..|+++++++||.+..+|...|+.++.|+|+||+||++++..+.+++.++
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceee
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHH----------H---HHHHhhccccceeeeecCCChHHHHHhhhc-----CCcEEEeCCC----ceEEEEEe---c
Q psy18032 183 QYTFK----------F---VKELGKFTKLQSTCLLGGDSMDNQFARLHA-----SPDIVVATPG----RFLHIVVE---M 237 (333)
Q Consensus 183 ~~lV~----------~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~-----~~~i~~~t~~----~i~~~~~~---~ 237 (333)
.|||+ | +..|.......+|+++||||++..++++++ +..++.+..+ .|.|.+.- .
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~ 451 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSE 451 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCc
Confidence 99995 2 222334445689999999999998888763 3456655433 35554432 2
Q ss_pred chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc-----
Q psy18032 238 ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD----- 292 (333)
Q Consensus 238 ~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd----- 292 (333)
+.|+..+ +++|+..+.+++.++..|. |+++..+|| +.+.+.+|+.+...||||||
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaarg 531 (731)
T KOG0339|consen 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARG 531 (731)
T ss_pred HHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcC
Confidence 4455433 4789999999999998876 999999999 23567999999999999999
Q ss_pred ---CCcccccc-------cccEEEEccCC
Q psy18032 293 ---DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 ---~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..|+| ..|+|||||||
T Consensus 532 ldI~~ikTVvnyD~ardIdththrigrtg 560 (731)
T KOG0339|consen 532 LDIPSIKTVVNYDFARDIDTHTHRIGRTG 560 (731)
T ss_pred CCccccceeecccccchhHHHHHHhhhcc
Confidence 44445554 45889999999
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=327.33 Aligned_cols=302 Identities=26% Similarity=0.438 Sum_probs=241.0
Q ss_pred ceeeccCCCCCCCCcccccCCCcccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHH
Q psy18032 16 TVTISSNDDNGNTGDKKKKMGGGFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~ 94 (333)
+.....++-.......-+.+.-+|++ |.-.+++.+.+++.||.+|||+|+++||.++.|.|++.+|+||+|||++|++|
T Consensus 198 n~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~p 277 (629)
T KOG0336|consen 198 NFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLP 277 (629)
T ss_pred CCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhcc
Confidence 33333333333333334566678887 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhc----ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHH
Q psy18032 95 MLEKLKTHA----ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 170 (333)
Q Consensus 95 ~l~~l~~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~ 170 (333)
.+.++...+ +..++.+|+++||++|+.|+.-.+..+. +-+.+.++++||.+..++.+.++.+++|+|+||++|.+
T Consensus 278 g~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlnd 356 (629)
T KOG0336|consen 278 GFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLND 356 (629)
T ss_pred ceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhh
Confidence 998887644 3458899999999999999988888764 56899999999999999999999999999999999999
Q ss_pred HHHhccccccCchhhHH----------HHHHHhhcc---ccceeeeecCCChHHHHHhhh----cCCcE-EEeCC-----
Q psy18032 171 IVVEMELKLSSIQYTFK----------FVKELGKFT---KLQSTCLLGGDSMDNQFARLH----ASPDI-VVATP----- 227 (333)
Q Consensus 171 ~l~~~~~~~~~l~~lV~----------~i~~l~~~~---~~~~~~l~~sAT~~~~v~~l~----~~~~i-~~~t~----- 227 (333)
+...+.++++.+.|||+ |...+.+++ ...+|+++.|||+++-+++|+ +.|.+ .+++-
T Consensus 357 L~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~ 436 (629)
T KOG0336|consen 357 LQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV 436 (629)
T ss_pred hhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeee
Confidence 99999999999999996 445555554 357899999999999998886 44533 34433
Q ss_pred CceEEEEEec--chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCc
Q psy18032 228 GRFLHIVVEM--ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKK 285 (333)
Q Consensus 228 ~~i~~~~~~~--~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~ 285 (333)
..+.|.+.-. ..|...+ .++||..+-.|+.|...|. |+++..+|| ++++++.|++|++
T Consensus 437 ~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~v 516 (629)
T KOG0336|consen 437 KSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEV 516 (629)
T ss_pred eeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCce
Confidence 2344544322 2344333 4889999999999987665 999999999 3357899999999
Q ss_pred ccccccc--------CCcccccc-------cccEEEEccCC-CchhhHH
Q psy18032 286 KYVQVTD--------DTIPLVLE-------GRDVVAMARTG-SGKTACF 318 (333)
Q Consensus 286 ~vLvaTd--------~~i~~vi~-------~~~~~~~grtG-~g~~~~~ 318 (333)
+|||||| ++|.+|+| ..|+||+|||| .|++...
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s 565 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS 565 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce
Confidence 9999999 44555554 33999999999 5655543
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-45 Score=334.17 Aligned_cols=286 Identities=29% Similarity=0.413 Sum_probs=242.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRALI 112 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~li 112 (333)
..+.|++|+|+...+++|++.+|..||.+|+++||..+.|+|++..|.||||||+||++|+++++.+.. ...|.-|||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalI 146 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALI 146 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEE
Confidence 345899999999999999999999999999999999999999999999999999999999999998743 334778999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~---- 187 (333)
|+||||||.|+++++.+.+++.++.+.++.||...+.+...+. +++||||||+||+.++... .++.+++++||+
T Consensus 147 ISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEAD 225 (758)
T KOG0343|consen 147 ISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEAD 225 (758)
T ss_pred ecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHH
Confidence 9999999999999999999999999999999999887766655 5899999999999888654 578999999996
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE-------eCCCceEEEEEec--chhhhhH-
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV-------ATPGRFLHIVVEM--ELKLSSI- 244 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~-------~t~~~i~~~~~~~--~~k~~~l- 244 (333)
.++.|...+|..+|+++||||-...+..++ ++|.++- +||.++.|.|+-. +.|+..+
T Consensus 226 R~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 226 RMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 333344556889999999999998887775 4565543 4788888877654 4555543
Q ss_pred ----------HHHhhcchhhHHHHHHHh---c-CCCcccccc---chHH---HhhhCCCCcccccccc--------CCcc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDL---V-GDSTEMIHK---QRQS---VRKWDPAKKKYVQVTD--------DTIP 296 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L---~-g~~~~~lh~---~r~~---l~~f~~g~~~vLvaTd--------~~i~ 296 (333)
.+||..+.+++..+++.+ + |++...+|| |+++ ..+|...+--||+||| +.++
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVd 385 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVD 385 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccc
Confidence 478999999998887655 4 999999999 4444 4788888999999999 6777
Q ss_pred cccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 297 LVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 297 ~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.||+ ..|+||+|||+ +|+++.+++|
T Consensus 386 wViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~p 421 (758)
T KOG0343|consen 386 WVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTP 421 (758)
T ss_pred eEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcc
Confidence 7885 66999999999 7999998887
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=334.67 Aligned_cols=278 Identities=30% Similarity=0.443 Sum_probs=222.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-----CCc
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-----SGV 108 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-----~~~ 108 (333)
.....|.+++|++.++++|.++||..||++|.++|+.+++|+|+++++|||||||++|++|+++.+...+.. .++
T Consensus 84 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 84 EGKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred cCCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 334689999999999999999999999999999999999999999999999999999999999998764322 257
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++|||+||++|+.|+++.++.+.+..++.+..++||.+...+.+.+.. .++|+|+||++|++++..+...+++++++|+
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lVi 243 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVL 243 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEe
Confidence 999999999999999999999999899999999999888777766654 6999999999999999988899999999995
Q ss_pred ----------HHHHHh---hccc--cceeeeecCCChHHHHHhh----hcCCcEEEeCC-----CceEEEEEec--chhh
Q psy18032 188 ----------FVKELG---KFTK--LQSTCLLGGDSMDNQFARL----HASPDIVVATP-----GRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~l~---~~~~--~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t~-----~~i~~~~~~~--~~k~ 241 (333)
|...+. +..+ ...|++++|||++..+..+ ...+.++...+ .++.+++... ..+.
T Consensus 244 DEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~ 323 (475)
T PRK01297 244 DEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKY 323 (475)
T ss_pred chHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHH
Confidence 222222 2222 2569999999997665543 33443333222 2344444322 2222
Q ss_pred hh-----------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CC
Q psy18032 242 SS-----------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DT 294 (333)
Q Consensus 242 ~~-----------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~ 294 (333)
.. -++|||++++.++.+++.|. |+.+..+|| +| +.+++|++|++++||||| ++
T Consensus 324 ~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~ 403 (475)
T PRK01297 324 KLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDG 403 (475)
T ss_pred HHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccC
Confidence 11 25899999999999999997 889999998 23 556999999999999999 56
Q ss_pred cccccc-------cccEEEEccCC
Q psy18032 295 IPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 295 i~~vi~-------~~~~~~~grtG 311 (333)
++.||+ ..|+||+||+|
T Consensus 404 v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 404 ISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred CCEEEEeCCCCCHHHHHHhhCccC
Confidence 666665 55999999999
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=323.96 Aligned_cols=289 Identities=27% Similarity=0.396 Sum_probs=228.6
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcc---
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAA--- 104 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--- 104 (333)
.+.+..-.+.|.+|+|+.+++++|.++||.+||++|..++|++..| .|++..|.||||||+||.+|+++++....+
T Consensus 173 ~~~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~ 252 (731)
T KOG0347|consen 173 DDSSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQ 252 (731)
T ss_pred ccccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHh
Confidence 3344455679999999999999999999999999999999999999 799999999999999999999997655322
Q ss_pred ------cCCce--EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc
Q psy18032 105 ------TSGVR--ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 176 (333)
Q Consensus 105 ------~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~ 176 (333)
.+.++ +||++||||||.|+.+.+..++.++++++..++||.....|.+.+...++|+|+||+||+.++....
T Consensus 253 e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n 332 (731)
T KOG0347|consen 253 ELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDN 332 (731)
T ss_pred hhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhh
Confidence 23445 9999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred c---cccCchhhHH----------HHHHHhhc---c-----ccceeeeecCCChHHHHH---------------------
Q psy18032 177 L---KLSSIQYTFK----------FVKELGKF---T-----KLQSTCLLGGDSMDNQFA--------------------- 214 (333)
Q Consensus 177 ~---~~~~l~~lV~----------~i~~l~~~---~-----~~~~~~l~~sAT~~~~v~--------------------- 214 (333)
. .++++++||+ ..+++.++ + ...+|++.||||++-...
T Consensus 333 ~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq 412 (731)
T KOG0347|consen 333 THLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQ 412 (731)
T ss_pred hhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHH
Confidence 5 6888999996 22333332 2 246899999999863211
Q ss_pred hh------hcCCcEEEeCCC-----ce-------------EEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcc
Q psy18032 215 RL------HASPDIVVATPG-----RF-------------LHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTE 268 (333)
Q Consensus 215 ~l------~~~~~i~~~t~~-----~i-------------~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~ 268 (333)
.+ ...|.|+-.||. ++ .+.|+... ....-.+||||+...+.+|+-.|. +++.-
T Consensus 413 ~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~-ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~ 491 (731)
T KOG0347|consen 413 HLMKKIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLT-RYPGRTLVFCNSIDCVKRLTVLLNNLDIPPL 491 (731)
T ss_pred HHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEe-ecCCceEEEechHHHHHHHHHHHhhcCCCCc
Confidence 11 134566665553 11 11121111 122336899999999999999887 88888
Q ss_pred cccc---chH---HHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHH
Q psy18032 269 MIHK---QRQ---SVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACF 318 (333)
Q Consensus 269 ~lh~---~r~---~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~ 318 (333)
.+|+ |++ .+++|++....||+||| +.+.+||. ..|+||.|||+ .|-+..+
T Consensus 492 ~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml 566 (731)
T KOG0347|consen 492 PLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVML 566 (731)
T ss_pred hhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEE
Confidence 9998 444 56999999999999999 55666664 56999999999 4544443
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=308.26 Aligned_cols=285 Identities=24% Similarity=0.407 Sum_probs=230.7
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccC
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~ 106 (333)
+++-..++.+|++|+|.|++++++..|+|.+|+.+|..++|.++.. +|+|+++++|+|||.||++.+|.++... ..
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~--~~ 159 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD--VV 159 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc--cc
Confidence 3333456689999999999999999999999999999999999985 7999999999999999999999999873 44
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~l 185 (333)
.|+++.|+|||+||.|..+++.+++++.++++....-|.....- ..+ ..+|+|+||+-+++++.. +.+++..++.+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG-~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG-NKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC-Ccc--hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 78999999999999999999999999999998888766633221 111 357999999999999988 77899999999
Q ss_pred HH-----------HHH---HHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---h
Q psy18032 186 FK-----------FVK---ELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---L 239 (333)
Q Consensus 186 V~-----------~i~---~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~ 239 (333)
|+ |-| .+.+.+|...|.++||||+.+.++.++ +++..+.. +...+.|++..+. .
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~ 316 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDD 316 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhh
Confidence 96 222 255667789999999999988776654 55544443 3456777777653 3
Q ss_pred hhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHH-HhhhCCCCcccccccc--------
Q psy18032 240 KLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQS-VRKWDPAKKKYVQVTD-------- 292 (333)
Q Consensus 240 k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~-l~~f~~g~~~vLvaTd-------- 292 (333)
|...+ .+|||.|++.|..++..|. |+.+..+|| +|.+ ++.|+.|+.+|||+|+
T Consensus 317 K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv 396 (477)
T KOG0332|consen 317 KYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDV 396 (477)
T ss_pred HHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhccccc
Confidence 44433 4899999999999999997 999999999 5654 5999999999999998
Q ss_pred CCcccccc-------------cccEEEEccCC-CchhhHH
Q psy18032 293 DTIPLVLE-------------GRDVVAMARTG-SGKTACF 318 (333)
Q Consensus 293 ~~i~~vi~-------------~~~~~~~grtG-~g~~~~~ 318 (333)
..+..|+| ..|+||||||| -||.+..
T Consensus 397 ~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a 436 (477)
T KOG0332|consen 397 AQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLA 436 (477)
T ss_pred ceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceE
Confidence 33444443 66999999999 4655543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=316.47 Aligned_cols=275 Identities=24% Similarity=0.423 Sum_probs=222.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
...+|+++++++.+.++|.++||..|+|+|.++|+.+++|+|++++||||||||++|++|++..+... ..++++||++
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~ 103 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILA 103 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEEC
Confidence 46899999999999999999999999999999999999999999999999999999999999988642 2367899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-HH----
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FV---- 189 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i---- 189 (333)
|+++|+.|+.+.+..++...++.+..+.|+....++...+.++++|+|+||+++.+++..+.+.+++++++|+ ..
T Consensus 104 Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 104 PTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHH
Confidence 9999999999999999888889999999999888888888888999999999999999988888999999994 11
Q ss_pred --------HHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecch---hhhh------
Q psy18032 190 --------KELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEMEL---KLSS------ 243 (333)
Q Consensus 190 --------~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~~---k~~~------ 243 (333)
.++.+..+...|.+++|||+++.+..+. ..+..+.. ....+.+++..... +...
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 1122233456899999999987765542 33322221 12334444443221 1111
Q ss_pred -----HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc--
Q psy18032 244 -----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-- 300 (333)
Q Consensus 244 -----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-- 300 (333)
-.++||++++.++.+++.|. ++.+..+|| +| +.+++|++|+++|||||| +++..|++
T Consensus 264 ~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~ 343 (401)
T PTZ00424 264 TLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYD 343 (401)
T ss_pred hcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEEC
Confidence 14789999999999999987 788999998 23 456999999999999999 45556664
Q ss_pred -----cccEEEEccCC
Q psy18032 301 -----GRDVVAMARTG 311 (333)
Q Consensus 301 -----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 344 ~p~s~~~y~qr~GRag 359 (401)
T PTZ00424 344 LPASPENYIHRIGRSG 359 (401)
T ss_pred CCCCHHHEeecccccc
Confidence 55999999999
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=315.50 Aligned_cols=291 Identities=25% Similarity=0.405 Sum_probs=226.3
Q ss_pred cccCCCcccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cC
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TS 106 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~ 106 (333)
.+.....|.++||++.+...|.. ++++.||.+|+++||.++.|+|++|.++||||||++|++|+++.+..... ..
T Consensus 131 ~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~ 210 (708)
T KOG0348|consen 131 APFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSD 210 (708)
T ss_pred cccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccC
Confidence 34556799999999999999986 79999999999999999999999999999999999999999999876432 45
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQY 184 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~ 184 (333)
|+.||||+||||||.|+|+.++++.+.. -+-.+.+.||...+.+...+++|++|||+||+||++++.+ ..+.++.+++
T Consensus 211 G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRw 290 (708)
T KOG0348|consen 211 GPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRW 290 (708)
T ss_pred CceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeE
Confidence 8999999999999999999999987754 3556677899998888899999999999999999999976 4588999999
Q ss_pred hHH----------HHHHHhhc---c-------------ccceeeeecCCChHHHHHhhh----cCCcEEE----------
Q psy18032 185 TFK----------FVKELGKF---T-------------KLQSTCLLGGDSMDNQFARLH----ASPDIVV---------- 224 (333)
Q Consensus 185 lV~----------~i~~l~~~---~-------------~~~~~~l~~sAT~~~~v~~l~----~~~~i~~---------- 224 (333)
+|+ |-+++..+ + |.+.|.++.|||+.+.+.+++ .+|..+-
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 996 22222222 1 235789999999999998875 2222221
Q ss_pred --------------------eCCCceEEEEEecchhhhhH-----------------HHHhhcchhhHHHHHHHhc----
Q psy18032 225 --------------------ATPGRFLHIVVEMELKLSSI-----------------QLSLTDFKQDTSRIALDLV---- 263 (333)
Q Consensus 225 --------------------~t~~~i~~~~~~~~~k~~~l-----------------~lif~~~~~~~~~l~~~L~---- 263 (333)
+.|..+.+.|.-...|+..+ .+||..+.+-++.=++.+.
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 23445566665554444322 2567666666665544331
Q ss_pred --------------------CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cc
Q psy18032 264 --------------------GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GR 302 (333)
Q Consensus 264 --------------------g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~ 302 (333)
+.+.--+|| .| ..++.|..-+-.||.||| +++..|++ ..
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 223456788 23 345899888888999999 56666665 66
Q ss_pred cEEEEccCC----CchhhHHHhhh
Q psy18032 303 DVVAMARTG----SGKTACFLFYF 322 (333)
Q Consensus 303 ~~~~~grtG----~g~~~~~~lp~ 322 (333)
|+||+|||. .|.++.|++|-
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~ 554 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPS 554 (708)
T ss_pred HHHHhhhhhhccCCCceEEEeccc
Confidence 999999998 79999999985
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=304.97 Aligned_cols=284 Identities=26% Similarity=0.441 Sum_probs=238.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
+...+|++|+|+++|++.+..+||++|+.+|++||.++.+|.|+++++++|+|||.+|.+++++.+.- ..+..+++++
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalil 100 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALIL 100 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHh
Confidence 45569999999999999999999999999999999999999999999999999999999999999865 3457799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
+||++||.|+.++.+.++...++.+..+.||.+...+. ......++|+++||+|+.+++..+.+..+.++++|+
T Consensus 101 aPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 101 APTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred cchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 99999999999999999999999999999998877444 444456999999999999999999999999999997
Q ss_pred --------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEec--chhhhhH----
Q psy18032 188 --------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEM--ELKLSSI---- 244 (333)
Q Consensus 188 --------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~--~~k~~~l---- 244 (333)
++.++.+.+|.+.|++++|||++.++..+. +.|..+.. |...+.|++... +.|+..+
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~ 260 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLY 260 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHH
Confidence 566677778899999999999998876653 44433332 444567777654 3344433
Q ss_pred -----HHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 245 -----QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 245 -----~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
.++|||+++.++.+...|. ++.+..+|+ +|. .+..|++|..+||+.|| .+++.|+|
T Consensus 261 ~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydl 340 (397)
T KOG0327|consen 261 RRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDL 340 (397)
T ss_pred HhhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeecc
Confidence 5889999999999999996 889999998 343 45999999999999999 44555665
Q ss_pred ----cccEEEEccCC----CchhhHHH
Q psy18032 301 ----GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG----~g~~~~~~ 319 (333)
..|+||+||+| .|-++.|+
T Consensus 341 P~~~~~yihR~gr~gr~grkg~~in~v 367 (397)
T KOG0327|consen 341 PARKENYIHRIGRAGRFGRKGVAINFV 367 (397)
T ss_pred ccchhhhhhhcccccccCCCceeeeee
Confidence 55999999999 56655554
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=332.79 Aligned_cols=292 Identities=28% Similarity=0.476 Sum_probs=241.1
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---cC
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA---TS 106 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~ 106 (333)
..-+++..+|.+.|++..++..++++||..|+|||.+|||+|+.|+|+|.+|.||||||++|++|++.++...++ ..
T Consensus 358 ~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gd 437 (997)
T KOG0334|consen 358 KECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGD 437 (997)
T ss_pred CCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCC
Confidence 334688999999999999999999999999999999999999999999999999999999999999988776542 34
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc---cccCch
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL---KLSSIQ 183 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~---~~~~l~ 183 (333)
||.+||++||++|+.|+++.++.|.+.+++++++++||....++...++.++.|+||||+|+++++..+.- +++++.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t 517 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVT 517 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999976654 555555
Q ss_pred hhHH----------HHHH---HhhccccceeeeecCCChHHHHHhhh-----cCCcEEEeCCC----ceEEEEEec---c
Q psy18032 184 YTFK----------FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVATPG----RFLHIVVEM---E 238 (333)
Q Consensus 184 ~lV~----------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~t~~----~i~~~~~~~---~ 238 (333)
++|+ |.+. |.+-++..+|+++||||++..+..++ .+..++++-.+ ++.+.+.-. +
T Consensus 518 ~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~ 597 (997)
T KOG0334|consen 518 YLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIEN 597 (997)
T ss_pred eeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCch
Confidence 8885 1111 22223457899999999999887765 33456665332 344444332 2
Q ss_pred hhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc------
Q psy18032 239 LKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 239 ~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd------ 292 (333)
.|+.++ ++|||+....|+.+.+.|. |++|..+|| .| ..+++|+++.+.+|+||+
T Consensus 598 eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGL 677 (997)
T KOG0334|consen 598 EKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGL 677 (997)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccc
Confidence 333333 5899999999999998885 999999998 34 356999999999999998
Q ss_pred --CCcccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 293 --DTIPLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 293 --~~i~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
.+++.|+| ..|+||.|||| +|-+..|+.|
T Consensus 678 dv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 678 DVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred ccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeCh
Confidence 56777776 55999999988 6777777777
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=318.00 Aligned_cols=264 Identities=19% Similarity=0.233 Sum_probs=196.7
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.|++++.++|++.||++|+++|.++||.+++|+|+++++|||||||+||++|+++.+... .+.++|||+||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAAD 96 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999998762 36799999999999999
Q ss_pred HHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc----cccccCchhhHH-----------
Q psy18032 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM----ELKLSSIQYTFK----------- 187 (333)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~----~~~~~~l~~lV~----------- 187 (333)
+++.++.++ ..++++..+.|+.+.. +...+.++++|+|+||+++...+... ...+++++++|+
T Consensus 97 ~~~~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg 174 (742)
T TIGR03817 97 QLRAVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFG 174 (742)
T ss_pred HHHHHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccH
Confidence 999999987 4578887777777654 44666778999999999987433211 123788888885
Q ss_pred -----HHHHHhh---ccccceeeeecCCChHHHHH---hhhcCCcEEEeC---CCceEEEEE-ecc--------------
Q psy18032 188 -----FVKELGK---FTKLQSTCLLGGDSMDNQFA---RLHASPDIVVAT---PGRFLHIVV-EME-------------- 238 (333)
Q Consensus 188 -----~i~~l~~---~~~~~~~~l~~sAT~~~~v~---~l~~~~~i~~~t---~~~i~~~~~-~~~-------------- 238 (333)
.+..+.+ ..+.++|++++|||+++... .+...+..++.. |....++.. ...
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~ 254 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRR 254 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCcccccccccccccc
Confidence 1111222 12456899999999975443 333334333321 111111111 000
Q ss_pred ----hhhhh---------HHHHhhcchhhHHHHHHHhc----------CCCcccccc------chHHHhhhCCCCccccc
Q psy18032 239 ----LKLSS---------IQLSLTDFKQDTSRIALDLV----------GDSTEMIHK------QRQSVRKWDPAKKKYVQ 289 (333)
Q Consensus 239 ----~k~~~---------l~lif~~~~~~~~~l~~~L~----------g~~~~~lh~------~r~~l~~f~~g~~~vLv 289 (333)
.+... .+++||++++.|+.++..|. +.++..+|| |++.+++|++|++++||
T Consensus 255 ~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLV 334 (742)
T TIGR03817 255 SASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVA 334 (742)
T ss_pred chHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEE
Confidence 11111 14889999999999997764 356788998 34556999999999999
Q ss_pred ccc--------CCcccccc-------cccEEEEccCC
Q psy18032 290 VTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 290 aTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
||| .+++.||+ ..|+||+||||
T Consensus 335 aTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaG 371 (742)
T TIGR03817 335 TTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAG 371 (742)
T ss_pred ECchHhccCCcccccEEEEeCCCCCHHHHHHhccccC
Confidence 999 45666665 55999999999
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=301.52 Aligned_cols=280 Identities=25% Similarity=0.395 Sum_probs=234.5
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+.-..-...|+++-|..+++..|+..+|..||++|..|||.++.+.|+|++|..|+|||++|...+++.+... ...+
T Consensus 17 ~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~--~~~~ 94 (980)
T KOG4284|consen 17 IDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR--SSHI 94 (980)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc--cCcc
Confidence 34445566899999999999999999999999999999999999999999999999999999999999988773 4478
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhc-cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.+|++||||+|.|+.+.+..++. +.|.+|.+++||+........++ .++|+||||+|++.+.+.+.++.++++++|+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVL 173 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVL 173 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEe
Confidence 999999999999999999999875 57899999999999887766666 4899999999999999999999999999997
Q ss_pred -----------HHHHHhh---ccccceeeeecCCChHHHHH----hhhcCCcEEEeCCC-----ceEEEEEecc------
Q psy18032 188 -----------FVKELGK---FTKLQSTCLLGGDSMDNQFA----RLHASPDIVVATPG-----RFLHIVVEME------ 238 (333)
Q Consensus 188 -----------~i~~l~~---~~~~~~~~l~~sAT~~~~v~----~l~~~~~i~~~t~~-----~i~~~~~~~~------ 238 (333)
|-+++.. -+|..+|++.+|||+++.+. +.+++|..+.-... .+.|+++...
T Consensus 174 DEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsv 253 (980)
T KOG4284|consen 174 DEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSV 253 (980)
T ss_pred ccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchH
Confidence 4444443 46789999999999986654 44566766654332 2456665331
Q ss_pred ----hhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc---
Q psy18032 239 ----LKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD--- 292 (333)
Q Consensus 239 ----~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd--- 292 (333)
.|+..+ ++|||+....|+.++..|. |+.+..+.| |. .++++++++.++|||+||
T Consensus 254 eemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLta 333 (980)
T KOG4284|consen 254 EEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTA 333 (980)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhh
Confidence 244433 6999999999999999997 999999998 33 356899999999999999
Q ss_pred -----CCcccccc-------cccEEEEccCC
Q psy18032 293 -----DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 -----~~i~~vi~-------~~~~~~~grtG 311 (333)
+.+..|+| ..|+|||||+|
T Consensus 334 RGIDa~~vNLVVNiD~p~d~eTY~HRIGRAg 364 (980)
T KOG4284|consen 334 RGIDADNVNLVVNIDAPADEETYFHRIGRAG 364 (980)
T ss_pred ccCCccccceEEecCCCcchHHHHHHhhhcc
Confidence 55667776 66999999999
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=283.77 Aligned_cols=288 Identities=43% Similarity=0.647 Sum_probs=233.1
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
+.+.+.+|..+||+..+.+++.+.||..|||+|+++||.++.|+|+...|-||||||.||++|+++++.... ..|.+++
T Consensus 16 k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~Ral 94 (529)
T KOG0337|consen 16 KKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRAL 94 (529)
T ss_pred ccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-cccccee
Confidence 334479999999999999999999999999999999999999999999999999999999999999998866 4578999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
+++||++|+.|..+..+.+++++++++++++||.+.+++...+..+++||++||++++++...-.+.++.+.|+|+
T Consensus 95 ilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEad 174 (529)
T KOG0337|consen 95 ILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEAD 174 (529)
T ss_pred eccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999988899999999995
Q ss_pred ------HHHHHhhc---cccceeeeecCCChHHHHHhhh----cCCcEEEeCC-Cc------eEEEEEecchhhhhH---
Q psy18032 188 ------FVKELGKF---TKLQSTCLLGGDSMDNQFARLH----ASPDIVVATP-GR------FLHIVVEMELKLSSI--- 244 (333)
Q Consensus 188 ------~i~~l~~~---~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-~~------i~~~~~~~~~k~~~l--- 244 (333)
|-+.+..+ ++..+|+++||||++......+ .+|..+-... .. ..-+.+..+.|...+
T Consensus 175 rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 175 RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHH
Confidence 33343333 4556799999999997765544 2333332111 11 122223334444333
Q ss_pred ---------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 245 ---------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 245 ---------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
.++|+.|+..++.+...|+ |+.+..+.+ ++..+.+|+.++..+||.|| +-.+.||
T Consensus 255 l~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvi 334 (529)
T KOG0337|consen 255 LGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVI 334 (529)
T ss_pred HhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccc
Confidence 4789999999999998887 777776665 23356999999999999999 3444556
Q ss_pred c-------cccEEEEccCC----CchhhHHHh
Q psy18032 300 E-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 300 ~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
| ..++||+||+. +|.+.+++.
T Consensus 335 nyd~p~~~klFvhRVgr~aragrtg~aYs~V~ 366 (529)
T KOG0337|consen 335 NYDFPPDDKLFVHRVGRVARAGRTGRAYSLVA 366 (529)
T ss_pred cccCCCCCceEEEEecchhhccccceEEEEEe
Confidence 5 56899999887 455554443
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=289.36 Aligned_cols=298 Identities=26% Similarity=0.347 Sum_probs=229.7
Q ss_pred CCCCCCCCcccccCCCcccc----cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 22 NDDNGNTGDKKKKMGGGFQS----FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 22 ~~~~~~~~~~~~~~~~~f~~----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
.....-.+.+-+.+..+|++ +..++.+++.+.+.||..|+|+|.+++|.++.++|+++|||||||||++|.+|+++
T Consensus 117 ~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~ 196 (593)
T KOG0344|consen 117 SNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQ 196 (593)
T ss_pred cceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHH
Confidence 33444455666777888987 67999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhhc---ccCCceEEEEcccHHHHHHHHHHHHHHh--ccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHH
Q psy18032 98 KLKTHA---ATSGVRALILSPTRELALQTFKFVKELG--KFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHI 171 (333)
Q Consensus 98 ~l~~~~---~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~ 171 (333)
++.... ...|.+++|++|+++|+.|++..++++. ..++..++.+.......+.. ......++|+|+||-++..+
T Consensus 197 ~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~ 276 (593)
T KOG0344|consen 197 HLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGL 276 (593)
T ss_pred HHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHH
Confidence 988754 2457899999999999999999999988 56666666555443332221 22233589999999999999
Q ss_pred HHhcc--ccccCchhhHH-----------HHHHHhhcc----ccceeeeecCCChHHHHHhhhc-----CCcEEEeCCC-
Q psy18032 172 VVEME--LKLSSIQYTFK-----------FVKELGKFT----KLQSTCLLGGDSMDNQFARLHA-----SPDIVVATPG- 228 (333)
Q Consensus 172 l~~~~--~~~~~l~~lV~-----------~i~~l~~~~----~~~~~~l~~sAT~~~~v~~l~~-----~~~i~~~t~~- 228 (333)
+..+. ++++.+.++|+ |...+..+. ......-+||||++..+++|+. ...++++..+
T Consensus 277 ~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s 356 (593)
T KOG0344|consen 277 LGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS 356 (593)
T ss_pred hcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh
Confidence 98876 78999999996 333333332 2345566899999999998862 3356666543
Q ss_pred ---ceEEEEEec-chhhhhH-------------HHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCC
Q psy18032 229 ---RFLHIVVEM-ELKLSSI-------------QLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDP 282 (333)
Q Consensus 229 ---~i~~~~~~~-~~k~~~l-------------~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~ 282 (333)
++.|-+..+ ..+-+.+ .+||+.+.++|.+|+..|. ++++.++|| +.+.+++|+.
T Consensus 357 a~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 357 ANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred HhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 344444433 2222211 5889999999999998883 889999998 3357899999
Q ss_pred CCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 283 AKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 283 g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
|++|||+||| ..+..||| -.|+||+|||| +|+|++|.
T Consensus 437 g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 437 GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999 55666665 33999999999 78887775
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=277.20 Aligned_cols=290 Identities=23% Similarity=0.318 Sum_probs=217.0
Q ss_pred CcccccCCCHHHHH----------HHHhCCCCCCcHHHHhHHHHHhc---------CCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLK----------GVLKRGYKIPTPIQRKTIPLVLE---------GRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 37 ~~f~~~~l~~~l~~----------~l~~~g~~~~~~~Q~~~i~~i~~---------g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
..|+.+++++.+.. ++.++++.+..|+|..++|.++. ++|+.|.||||||||+||.+|+++
T Consensus 127 q~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ 206 (620)
T KOG0350|consen 127 QIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQ 206 (620)
T ss_pred eeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHH
Confidence 46777887776554 49999999999999999999853 579999999999999999999999
Q ss_pred HhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCC-----CCEEEECchHHHHHH
Q psy18032 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-----PDIVVATPGRFLHIV 172 (333)
Q Consensus 98 ~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----~~IlI~TP~rll~~l 172 (333)
.+...+-+ ..+||||+||++|+.|+++.|.++....|+.|+.+.|..+.+.+.+.+.+. .+|||+||+||.+++
T Consensus 207 ~L~~R~v~-~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 207 LLSSRPVK-RLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHccCCcc-ceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 98875433 479999999999999999999999999999999999999988888887663 489999999999999
Q ss_pred H-hccccccCchhhHH-HHH-------------------------------------------HHhhc---cccceeeee
Q psy18032 173 V-EMELKLSSIQYTFK-FVK-------------------------------------------ELGKF---TKLQSTCLL 204 (333)
Q Consensus 173 ~-~~~~~~~~l~~lV~-~i~-------------------------------------------~l~~~---~~~~~~~l~ 204 (333)
. ...+++++++|+|+ ..| ++... +....+.+.
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 8 56799999999996 000 01100 011233566
Q ss_pred cCCChHHHHHhh---h-cCCcEEE---------eCCCceEEEEEecchhhhhH-------------HHHhhcchhhHHHH
Q psy18032 205 GGDSMDNQFARL---H-ASPDIVV---------ATPGRFLHIVVEMELKLSSI-------------QLSLTDFKQDTSRI 258 (333)
Q Consensus 205 ~sAT~~~~v~~l---~-~~~~i~~---------~t~~~i~~~~~~~~~k~~~l-------------~lif~~~~~~~~~l 258 (333)
+|||++..-.++ . ..|...- ..|..+.+.++-.+.+++.+ .++|+++...+.++
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl 445 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRL 445 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHH
Confidence 788876443333 2 2232221 24555666665555444332 37799999999999
Q ss_pred HHHhc------CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 259 ALDLV------GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 259 ~~~L~------g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+..|. ++++..+.| .| +.+++|..|++++|||+| .+++.||| ..|+||+||||
T Consensus 446 ~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTA 525 (620)
T KOG0350|consen 446 AHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTA 525 (620)
T ss_pred HHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccc
Confidence 97774 455556665 23 556999999999999999 56666776 55999999999
Q ss_pred CchhhHHHhhhhhhcc
Q psy18032 312 SGKTACFLFYFFFRFD 327 (333)
Q Consensus 312 ~g~~~~~~lp~~~~~~ 327 (333)
..-...|++.+++..+
T Consensus 526 RAgq~G~a~tll~~~~ 541 (620)
T KOG0350|consen 526 RAGQDGYAITLLDKHE 541 (620)
T ss_pred cccCCceEEEeecccc
Confidence 4444456666665544
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=292.28 Aligned_cols=277 Identities=21% Similarity=0.310 Sum_probs=217.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---ccCCceEEEEcccHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---ATSGVRALILSPTRELA 120 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~~~~~~lil~Pt~~L~ 120 (333)
|++.+.+++++. |..|||.|.++||.+.+|+|+|++||||||||+++++|+++.+.... ...+..||||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 889999999998 99999999999999999999999999999999999999999998862 23468999999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc--cccCchhhHH-----------
Q psy18032 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQYTFK----------- 187 (333)
Q Consensus 121 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~--~~~~l~~lV~----------- 187 (333)
+++.+.++..+..+|+.+...+|+++..+..+..++.|||||+|||.|.-++....+ .+++++++|+
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999999999999998888888999999999999988876544 5899999994
Q ss_pred ------HHHHHhhccccceeeeecCCChH--HHHHhhhcC---C-cEEEeCCCc-eEEEEEec--c--------------
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMD--NQFARLHAS---P-DIVVATPGR-FLHIVVEM--E-------------- 238 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~--~~v~~l~~~---~-~i~~~t~~~-i~~~~~~~--~-------------- 238 (333)
-+..+..+.+ +.|.+..|||.. .++.++.-+ + .|+..+..+ ...-+..- .
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~ 245 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYER 245 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHH
Confidence 2333444445 789999999985 556666522 2 233222221 11111100 0
Q ss_pred ----hhhhhHHHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 239 ----LKLSSIQLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 239 ----~k~~~l~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.+.+..++||+||+..+|.++..|+ +..+..-|| ++.+.++|++|+.+++|||. .+++.
T Consensus 246 i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdl 325 (814)
T COG1201 246 IAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDL 325 (814)
T ss_pred HHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceE
Confidence 1111225999999999999999887 356666676 23445999999999999997 67888
Q ss_pred ccc-------cccEEEEccCC---CchhhHHHhhh
Q psy18032 298 VLE-------GRDVVAMARTG---SGKTACFLFYF 322 (333)
Q Consensus 298 vi~-------~~~~~~~grtG---~g~~~~~~lp~ 322 (333)
|++ +..+||+||+| .+...++++|.
T Consensus 326 VIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 326 VIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred EEEeCCcHHHHHHhHhccccccccCCcccEEEEec
Confidence 886 66999999999 34344455443
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=257.35 Aligned_cols=182 Identities=27% Similarity=0.474 Sum_probs=166.7
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..++.|.++-|.|++++++-+.||++|+.+|.+|||...-|.|++++|.+|.|||++|+++.++.+.... ....++++
T Consensus 39 ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~--g~vsvlvm 116 (387)
T KOG0329|consen 39 IHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD--GQVSVLVM 116 (387)
T ss_pred EeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC--CeEEEEEE
Confidence 5568999999999999999999999999999999999999999999999999999999999999998743 36789999
Q ss_pred cccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 114 SPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
|.|||||.|+.+...++.++ +++++++++||.+.+...+.+++.|||+|+||+|++.+.+++.+++++++.+|+
T Consensus 117 chtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 117 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDK 196 (387)
T ss_pred eccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHH
Confidence 99999999999999999887 479999999999998888889999999999999999999999999999999996
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+.++.++.|...|+++||||++++++...
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC 235 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 235 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHH
Confidence 444566677889999999999998887654
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=294.11 Aligned_cols=266 Identities=17% Similarity=0.199 Sum_probs=193.4
Q ss_pred Cccc--ccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 37 GGFQ--SFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 37 ~~f~--~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..|. .++....+...+++ +||..|+|+|.++|++++.|+|+++++|||+|||+||++|++.. ++.+|||
T Consensus 435 ~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLVI 506 (1195)
T PLN03137 435 KKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLVI 506 (1195)
T ss_pred ccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEEE
Confidence 3465 46677778777776 69999999999999999999999999999999999999999864 4589999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh------CCCCEEEECchHHHH--HHHhc--cc-cccCc
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH------ASPDIVVATPGRFLH--IVVEM--EL-KLSSI 182 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~IlI~TP~rll~--~l~~~--~~-~~~~l 182 (333)
+|+++|+.+++..+.. .++.+..+.++....++...+. ..++||++|||++.. .+... .+ ....+
T Consensus 507 SPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~L 582 (1195)
T PLN03137 507 SPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLL 582 (1195)
T ss_pred eCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccc
Confidence 9999999988877766 5899999999988777665543 358999999999862 12111 11 12335
Q ss_pred hhhHH------------HHHHHhhcc-----ccceeeeecCCChHHHHHh----hh--cCCcEEEeCC--CceEEEEEec
Q psy18032 183 QYTFK------------FVKELGKFT-----KLQSTCLLGGDSMDNQFAR----LH--ASPDIVVATP--GRFLHIVVEM 237 (333)
Q Consensus 183 ~~lV~------------~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~----l~--~~~~i~~~t~--~~i~~~~~~~ 237 (333)
.++|+ |.+++..+. ....+++++|||++..+.. .. ..+.++..+. +++.+.+...
T Consensus 583 slIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k 662 (1195)
T PLN03137 583 ARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPK 662 (1195)
T ss_pred ceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEecc
Confidence 55554 444443221 1256788999999876544 11 2334444332 3444444433
Q ss_pred chh-h------------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc----
Q psy18032 238 ELK-L------------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD---- 292 (333)
Q Consensus 238 ~~k-~------------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd---- 292 (333)
..+ . ....+|||+++++|+.++..|. |+++..||| +| +.+++|.+|+++|||||+
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGM 742 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGM 742 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhc
Confidence 211 0 1125899999999999999997 999999998 33 456999999999999998
Q ss_pred ----CCcccccc-------cccEEEEccCC-Cch
Q psy18032 293 ----DTIPLVLE-------GRDVVAMARTG-SGK 314 (333)
Q Consensus 293 ----~~i~~vi~-------~~~~~~~grtG-~g~ 314 (333)
+++..||+ ..||||+|||| .|+
T Consensus 743 GIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 743 GINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred CCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCC
Confidence 45555553 33999999999 454
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=295.36 Aligned_cols=267 Identities=21% Similarity=0.270 Sum_probs=196.3
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc----cCCceEEEEcccHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA----TSGVRALILSPTREL 119 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----~~~~~~lil~Pt~~L 119 (333)
|++.+.+.+++ +|..|||+|.++||.+++|+|++++||||||||++|++|+++.+..... .+++++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 77888888776 7999999999999999999999999999999999999999999875321 346789999999999
Q ss_pred HHHHHHHHHH-------Hh----ccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc--cccCchhh
Q psy18032 120 ALQTFKFVKE-------LG----KFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL--KLSSIQYT 185 (333)
Q Consensus 120 ~~q~~~~~~~-------~~----~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~--~~~~l~~l 185 (333)
++|+++.+.. ++ ... ++++...+|+.+..++.+.+.+.++|+|+||+++..++..... .+++++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999987653 22 223 7788999999998888778888899999999999888765543 47888888
Q ss_pred HH-H----------------HHHHhhccccceeeeecCCChHH--HHHhhhcC--------CcEEEeCC-C-ceE-EEE-
Q psy18032 186 FK-F----------------VKELGKFTKLQSTCLLGGDSMDN--QFARLHAS--------PDIVVATP-G-RFL-HIV- 234 (333)
Q Consensus 186 V~-~----------------i~~l~~~~~~~~~~l~~sAT~~~--~v~~l~~~--------~~i~~~t~-~-~i~-~~~- 234 (333)
|+ . +..+..+.+...|.+++|||+++ .+..+..+ +..++... . .+. ...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~ 256 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVIS 256 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEec
Confidence 84 1 12222333356789999999864 44444321 11122111 1 110 000
Q ss_pred ------Eecch--------------hhhhHHHHhhcchhhHHHHHHHhcC--------CCcccccc-----ch-HHHhhh
Q psy18032 235 ------VEMEL--------------KLSSIQLSLTDFKQDTSRIALDLVG--------DSTEMIHK-----QR-QSVRKW 280 (333)
Q Consensus 235 ------~~~~~--------------k~~~l~lif~~~~~~~~~l~~~L~g--------~~~~~lh~-----~r-~~l~~f 280 (333)
..... +...-.+||||+++.|+.++..|.. ..+..+|| +| +.+++|
T Consensus 257 p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~f 336 (876)
T PRK13767 257 PVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKL 336 (876)
T ss_pred cCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHH
Confidence 00000 0011258999999999999988852 56788887 33 455999
Q ss_pred CCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 281 DPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 281 ~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
++|++++||||+ ++++.||+ ..|+||+||+|
T Consensus 337 k~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaG 382 (876)
T PRK13767 337 KRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAG 382 (876)
T ss_pred HcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCC
Confidence 999999999998 55667775 55999999999
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=275.45 Aligned_cols=246 Identities=18% Similarity=0.208 Sum_probs=178.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+||+.|+|+|.++|+++++|+|+++++|||||||+||++|++.. ++.+||++||++|+.|+++.++.
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~---- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKA---- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHH----
Confidence 469999999999999999999999999999999999999999853 45799999999999999999886
Q ss_pred CCceEEEEECCcchHHHHHH---hh-CCCCEEEECchHHHHHH-Hhccc-cccCchhhHH------------HHHHHhhc
Q psy18032 134 TKLQSTCLLGGDSMDNQFAR---LH-ASPDIVVATPGRFLHIV-VEMEL-KLSSIQYTFK------------FVKELGKF 195 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~---l~-~~~~IlI~TP~rll~~l-~~~~~-~~~~l~~lV~------------~i~~l~~~ 195 (333)
.++.+..+.++....++... +. ..++|+++||+++.... ....+ ...+++++|+ |.+++..+
T Consensus 74 ~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 74 SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 47788877777766543322 22 34899999999976322 11112 4566677764 22332221
Q ss_pred ---c--ccceeeeecCCChHHHHHhh------hcCCcEEEeCCC--ceEEEEEecc-hhhh------------hHHHHhh
Q psy18032 196 ---T--KLQSTCLLGGDSMDNQFARL------HASPDIVVATPG--RFLHIVVEME-LKLS------------SIQLSLT 249 (333)
Q Consensus 196 ---~--~~~~~~l~~sAT~~~~v~~l------~~~~~i~~~t~~--~i~~~~~~~~-~k~~------------~l~lif~ 249 (333)
. ....+.+++|||+++.+... ...+.+...+.. ++...+.... .... ...+|||
T Consensus 154 ~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~ 233 (470)
T TIGR00614 154 GSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYC 233 (470)
T ss_pred HHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEE
Confidence 1 13567899999998765332 134555554333 3333333222 1111 1138999
Q ss_pred cchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEE
Q psy18032 250 DFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVA 306 (333)
Q Consensus 250 ~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~ 306 (333)
++++.|+.+++.|. |+++..+|| +| +.+++|++|+++|||||| +++..||+ ..|+||
T Consensus 234 ~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr 313 (470)
T TIGR00614 234 PSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQE 313 (470)
T ss_pred CcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhh
Confidence 99999999999996 899999998 33 456999999999999998 45555554 449999
Q ss_pred EccCC
Q psy18032 307 MARTG 311 (333)
Q Consensus 307 ~grtG 311 (333)
+||+|
T Consensus 314 ~GRaG 318 (470)
T TIGR00614 314 SGRAG 318 (470)
T ss_pred hcCcC
Confidence 99999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=285.21 Aligned_cols=264 Identities=17% Similarity=0.176 Sum_probs=194.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
|.|++++|++++++++++.||.+|+|+|.++++. +..|+|++++||||||||++|.+|++..+.. +.++||++|
T Consensus 1 ~~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P 75 (737)
T PRK02362 1 MKIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVP 75 (737)
T ss_pred CChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeC
Confidence 5799999999999999999999999999999998 7889999999999999999999999999864 668999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++||.|+++.++++.. .|+++..++|+...... ....++|+|+||+++..++.++...+.+++++|+ |+++
T Consensus 76 ~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvVi--DE~H~l 149 (737)
T PRK02362 76 LRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVV--DEVHLI 149 (737)
T ss_pred hHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEE--ECcccc
Confidence 99999999999998754 48999999988755432 2245899999999999998876666788888884 2211
Q ss_pred --------------h--ccccceeeeecCCChH--HHHHhhhcCCcEEEe-CCCceEE--------------EEEec---
Q psy18032 194 --------------K--FTKLQSTCLLGGDSMD--NQFARLHASPDIVVA-TPGRFLH--------------IVVEM--- 237 (333)
Q Consensus 194 --------------~--~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~-t~~~i~~--------------~~~~~--- 237 (333)
+ ......|++++|||++ +.+..+.....+... .|-.+.. .....
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~ 229 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSK 229 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCccc
Confidence 1 1234679999999985 455555432111000 0000000 00000
Q ss_pred chh---------hhhHHHHhhcchhhHHHHHHHhcC--------------------------------------CCcccc
Q psy18032 238 ELK---------LSSIQLSLTDFKQDTSRIALDLVG--------------------------------------DSTEMI 270 (333)
Q Consensus 238 ~~k---------~~~l~lif~~~~~~~~~l~~~L~g--------------------------------------~~~~~l 270 (333)
... ....++|||++++.|+.++..|.. ..++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~h 309 (737)
T PRK02362 230 DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFH 309 (737)
T ss_pred hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEee
Confidence 000 111258999999999998876641 134566
Q ss_pred cc-----chHH-HhhhCCCCcccccccc--------CCcccccc----------------cccEEEEccCC
Q psy18032 271 HK-----QRQS-VRKWDPAKKKYVQVTD--------DTIPLVLE----------------GRDVVAMARTG 311 (333)
Q Consensus 271 h~-----~r~~-l~~f~~g~~~vLvaTd--------~~i~~vi~----------------~~~~~~~grtG 311 (333)
|+ +|+. .+.|++|+++|||||+ ++...||. ..|+|++||+|
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAG 380 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAG 380 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCC
Confidence 76 3444 4999999999999998 44444443 23889999999
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=281.46 Aligned_cols=265 Identities=18% Similarity=0.214 Sum_probs=196.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
++|+++++++.+.+.+++.||++|+|+|.++++. +++|+|++++||||||||++|.+|+++.+.. .+.++|||+|
T Consensus 1 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~----~~~~~l~l~P 76 (720)
T PRK00254 1 MKVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR----EGGKAVYLVP 76 (720)
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh----cCCeEEEEeC
Confidence 5799999999999999999999999999999997 8999999999999999999999999998775 2568999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++|+.|+++.++.+. ..++++..++|+.+.... ....++|+|+||+++..++.++...+++++++|+ |+++
T Consensus 77 ~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvVi--DE~H~l 150 (720)
T PRK00254 77 LKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVA--DEIHLI 150 (720)
T ss_pred hHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEE--cCcCcc
Confidence 9999999999999864 368999999998765432 2246899999999999998877677889999984 3322
Q ss_pred -------------hccccceeeeecCCChH--HHHHhhhcCCcEEE-eCCCceEEE-E----E---ecc-hh--------
Q psy18032 194 -------------KFTKLQSTCLLGGDSMD--NQFARLHASPDIVV-ATPGRFLHI-V----V---EME-LK-------- 240 (333)
Q Consensus 194 -------------~~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~-~t~~~i~~~-~----~---~~~-~k-------- 240 (333)
..+....|++++|||++ +.+..+.....+.. ..|-.+... + . ... .+
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 22345689999999985 45555543221111 111111100 0 0 000 00
Q ss_pred ------hhhHHHHhhcchhhHHHHHHHhc-----------------------------------CCCcccccc-----ch
Q psy18032 241 ------LSSIQLSLTDFKQDTSRIALDLV-----------------------------------GDSTEMIHK-----QR 274 (333)
Q Consensus 241 ------~~~l~lif~~~~~~~~~l~~~L~-----------------------------------g~~~~~lh~-----~r 274 (333)
....++|||++++.|+.++..|. ...+..+|+ +|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 01125899999999988775552 123567777 34
Q ss_pred HH-HhhhCCCCcccccccc--------CCcccccc---------------cccEEEEccCC
Q psy18032 275 QS-VRKWDPAKKKYVQVTD--------DTIPLVLE---------------GRDVVAMARTG 311 (333)
Q Consensus 275 ~~-l~~f~~g~~~vLvaTd--------~~i~~vi~---------------~~~~~~~grtG 311 (333)
+. .+.|++|+++|||||+ ++...||. ..|.|++||+|
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAG 371 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAG 371 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccC
Confidence 44 4999999999999998 34444442 24688999999
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=273.21 Aligned_cols=257 Identities=19% Similarity=0.205 Sum_probs=185.3
Q ss_pred cCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 42 FGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 42 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+++.+...+.|++ +||+.|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. ++.+||++|+++|+
T Consensus 7 ~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~ 78 (607)
T PRK11057 7 LNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLM 78 (607)
T ss_pred CCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHH
Confidence 3455556666766 69999999999999999999999999999999999999999864 34799999999999
Q ss_pred HHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hh-CCCCEEEECchHHHHHHHhccccccCchhhHH---------
Q psy18032 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LH-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--------- 187 (333)
Q Consensus 121 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--------- 187 (333)
.|+++.++. .++.+..+.++.+..+.... +. ...+++++||+++........+...++.++|+
T Consensus 79 ~dqv~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 79 KDQVDQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccc
Confidence 999999987 36777777777766554332 22 34899999999987432222334445666663
Q ss_pred ---HHHHHh------hccccceeeeecCCChHHHHHh-----h-hcCCcEEEeCC--CceEEEEEecchhhhh-------
Q psy18032 188 ---FVKELG------KFTKLQSTCLLGGDSMDNQFAR-----L-HASPDIVVATP--GRFLHIVVEMELKLSS------- 243 (333)
Q Consensus 188 ---~i~~l~------~~~~~~~~~l~~sAT~~~~v~~-----l-~~~~~i~~~t~--~~i~~~~~~~~~k~~~------- 243 (333)
|.+++. ... ...+++++|||.++.... + ...+.+..... .++...+.....+...
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~ 233 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQE 233 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHh
Confidence 222221 111 256789999999865432 1 13444444332 3344333332222211
Q ss_pred ----HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 244 ----IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 244 ----l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
..+|||+++++|+.++..|. |+++..+|+ +++.+++|++|+++|||||+ +++..||+
T Consensus 234 ~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~ 313 (607)
T PRK11057 234 QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDI 313 (607)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCC
Confidence 24899999999999999997 899999998 33456999999999999998 44445553
Q ss_pred ----cccEEEEccCC
Q psy18032 301 ----GRDVVAMARTG 311 (333)
Q Consensus 301 ----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 314 P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 314 PRNIESYYQETGRAG 328 (607)
T ss_pred CCCHHHHHHHhhhcc
Confidence 34999999999
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=269.79 Aligned_cols=252 Identities=19% Similarity=0.215 Sum_probs=184.8
Q ss_pred HHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 50 KGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 50 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+.|++ +||+.|+|+|.++|+++++|+|+++++|||+|||+||++|++.. +..++|++|+++|+.|+++.++
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~ 74 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLR 74 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHH
Confidence 45555 79999999999999999999999999999999999999999853 4479999999999999999998
Q ss_pred HHhccCCceEEEEECCcchHHHHHHh----hCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHH
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKEL 192 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l----~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l 192 (333)
. .|+.+..+.++.+..+....+ ....+|+++||+++........+...++.++|+ |.+++
T Consensus 75 ~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y 150 (591)
T TIGR01389 75 A----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEY 150 (591)
T ss_pred H----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHH
Confidence 7 367888888888766554332 235899999999997544444455667777774 22222
Q ss_pred hhc------cccceeeeecCCChHHHHHh----hh--cCCcEEEeCC--CceEEEEEecchhhhh-----------HHHH
Q psy18032 193 GKF------TKLQSTCLLGGDSMDNQFAR----LH--ASPDIVVATP--GRFLHIVVEMELKLSS-----------IQLS 247 (333)
Q Consensus 193 ~~~------~~~~~~~l~~sAT~~~~v~~----l~--~~~~i~~~t~--~~i~~~~~~~~~k~~~-----------l~li 247 (333)
.++ .+ ..+++++|||.+..+.. .. ..+.+++.+. .++...+.....+... ..+|
T Consensus 151 ~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~II 229 (591)
T TIGR01389 151 QRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGII 229 (591)
T ss_pred HHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEE
Confidence 222 22 34489999998766543 21 2344444433 3344444333222221 2479
Q ss_pred hhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccE
Q psy18032 248 LTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDV 304 (333)
Q Consensus 248 f~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~ 304 (333)
||++++.++.+++.|. |+++..+|| .| +.+++|.+|+++|||||+ +++..|+. ..|+
T Consensus 230 f~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~ 309 (591)
T TIGR01389 230 YASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYY 309 (591)
T ss_pred EECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHh
Confidence 9999999999999996 899999998 34 445999999999999998 34445553 3499
Q ss_pred EEEccCC-Cch
Q psy18032 305 VAMARTG-SGK 314 (333)
Q Consensus 305 ~~~grtG-~g~ 314 (333)
|++||+| .|+
T Consensus 310 Q~~GRaGR~G~ 320 (591)
T TIGR01389 310 QEAGRAGRDGL 320 (591)
T ss_pred hhhccccCCCC
Confidence 9999999 453
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=273.68 Aligned_cols=257 Identities=17% Similarity=0.154 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 43 GLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 43 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
+.+..+.+.+.+ ++|+ ||++|.++|+.++++ +|.+++||||||||++|++|++..+.. +++++|++|
T Consensus 435 ~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvP 508 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVP 508 (926)
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeC
Confidence 445566666655 6996 999999999999986 799999999999999999999998876 679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH---HhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHH
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKE 191 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~ 191 (333)
|++||.|+++.++++....++++..+.|+.+..++.+ .+.+ .++|+|+||.. + .+.+.+++++++|+ |+
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVI--DE 581 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLII--DE 581 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEe--ec
Confidence 9999999999999988878899999988877555433 3344 49999999942 2 35578899999995 33
Q ss_pred Hhh----------ccccceeeeecCCChHHHHHhhh----cCCcEEEeCC-Cc--eEEEEEecchhh-----------hh
Q psy18032 192 LGK----------FTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATP-GR--FLHIVVEMELKL-----------SS 243 (333)
Q Consensus 192 l~~----------~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~-~~--i~~~~~~~~~k~-----------~~ 243 (333)
..+ ..+...+++++|||..+....+. .++.++...| ++ +..++.....+. ..
T Consensus 582 ahrfgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~ 661 (926)
T TIGR00580 582 EQRFGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGG 661 (926)
T ss_pred ccccchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCC
Confidence 221 23456899999999755443322 2333333222 22 333333221110 11
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~----- 300 (333)
.+++||++++.++.+++.|. ++++..+|| +.+.+++|++|+++|||||| ++++.|+.
T Consensus 662 qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~ 741 (926)
T TIGR00580 662 QVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADK 741 (926)
T ss_pred eEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCC
Confidence 24789999999999998886 678999999 33567999999999999999 45555562
Q ss_pred ---cccEEEEccCCC
Q psy18032 301 ---GRDVVAMARTGS 312 (333)
Q Consensus 301 ---~~~~~~~grtG~ 312 (333)
+.++||+||+|.
T Consensus 742 ~gls~l~Qr~GRvGR 756 (926)
T TIGR00580 742 FGLAQLYQLRGRVGR 756 (926)
T ss_pred CCHHHHHHHhcCCCC
Confidence 458899999993
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=275.99 Aligned_cols=254 Identities=16% Similarity=0.122 Sum_probs=189.8
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++..+....++|+ ||++|.++|+.++++ +|++++||||||||.+|+.+++..+.. +++++|++||++|
T Consensus 588 ~~~~~~~~~~~~~-~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-----g~qvlvLvPT~eL 661 (1147)
T PRK10689 588 EQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-----HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 4445556678995 999999999999997 899999999999999999998877654 7899999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
|.|+++.+++.....++++..+.|+.+..++...+. .+++|+|+||+.+ ...+.+++++++|+
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrfG~ 736 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRFGV 736 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhcch
Confidence 999999999876667888888998888777655443 3589999999643 24567788999885
Q ss_pred -HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEeCCC-c--eEEEEEecch---hhh--------hHHHHh
Q psy18032 188 -FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPG-R--FLHIVVEMEL---KLS--------SIQLSL 248 (333)
Q Consensus 188 -~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~t~~-~--i~~~~~~~~~---k~~--------~l~lif 248 (333)
+...+ +.++...|++++|||..+....+. .++.++...|. + +.+++..... +.. ..+++|
T Consensus 737 ~~~e~l-k~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf 815 (1147)
T PRK10689 737 RHKERI-KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYL 815 (1147)
T ss_pred hHHHHH-HhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEE
Confidence 11112 223567899999999765544432 34444433332 2 3333322111 111 125789
Q ss_pred hcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc-----c---cc
Q psy18032 249 TDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL-----E---GR 302 (333)
Q Consensus 249 ~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi-----~---~~ 302 (333)
||+++.++.+++.|. +.++..+|| +.+.+++|++|+++|||||| +++..|+ + +.
T Consensus 816 ~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq 895 (1147)
T PRK10689 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 (1147)
T ss_pred ECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHH
Confidence 999999999998875 678899998 23567999999999999999 5667777 2 55
Q ss_pred cEEEEccCC
Q psy18032 303 DVVAMARTG 311 (333)
Q Consensus 303 ~~~~~grtG 311 (333)
|+||+||+|
T Consensus 896 ~~Qr~GRvG 904 (1147)
T PRK10689 896 LHQLRGRVG 904 (1147)
T ss_pred HHHHhhccC
Confidence 899999999
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=263.84 Aligned_cols=257 Identities=16% Similarity=0.153 Sum_probs=183.7
Q ss_pred HHHHh-CCCCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE-EcccHHHHHHHHHH
Q psy18032 50 KGVLK-RGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI-LSPTRELALQTFKF 126 (333)
Q Consensus 50 ~~l~~-~g~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li-l~Pt~~L~~q~~~~ 126 (333)
+.+++ .||+ |+|+|.+++|.+++|+ ++++++|||||||+++.++.+.. .. ....++.|| ++|||+|+.|+++.
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~--~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI--GAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc--cccccceEEEeCchHHHHHHHHHH
Confidence 34444 4999 9999999999999998 58889999999999766555532 22 233566666 66999999999999
Q ss_pred HHHHhccC-----------------------CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccc-----
Q psy18032 127 VKELGKFT-----------------------KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK----- 178 (333)
Q Consensus 127 ~~~~~~~~-----------------------~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~----- 178 (333)
++++++.+ ++++..++||.+.+.+...+..+++|||+|+ +++.++.+.
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~ 157 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCcccccccc
Confidence 99998755 4889999999999999999999999999995 555555542
Q ss_pred -----------ccCchhhHH--------HHHHHhhccc-----c---ceeeeecCCChHHHHHhh----hcCCc-EEEe-
Q psy18032 179 -----------LSSIQYTFK--------FVKELGKFTK-----L---QSTCLLGGDSMDNQFARL----HASPD-IVVA- 225 (333)
Q Consensus 179 -----------~~~l~~lV~--------~i~~l~~~~~-----~---~~~~l~~sAT~~~~v~~l----~~~~~-i~~~- 225 (333)
+++++++|+ |.+++.+++. . ..|+++||||++..+..+ ..++. +.+.
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 678888886 5555555443 1 269999999998655433 22332 2221
Q ss_pred ---CCCceEEEEEec-chhhh--------------hHHHHhhcchhhHHHHHHHhcCCCcccccc-----chH------H
Q psy18032 226 ---TPGRFLHIVVEM-ELKLS--------------SIQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QRQ------S 276 (333)
Q Consensus 226 ---t~~~i~~~~~~~-~~k~~--------------~l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r~------~ 276 (333)
+..++.+++... +.|.. ...+|||||++.|+.+++.|.......+|| +|+ .
T Consensus 238 ~~l~a~ki~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 238 KRLAAKKIVKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKFELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred ccccccceEEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCCeEeeCCCCHHHHhhHHHHHH
Confidence 223445544322 11211 125899999999999999998444489998 232 3
Q ss_pred HhhhCC----CC-------cccccccc-------CCcccccc-----cccEEEEccCC-Cch
Q psy18032 277 VRKWDP----AK-------KKYVQVTD-------DTIPLVLE-----GRDVVAMARTG-SGK 314 (333)
Q Consensus 277 l~~f~~----g~-------~~vLvaTd-------~~i~~vi~-----~~~~~~~grtG-~g~ 314 (333)
+++|++ |+ .+|||||| .+.+.+|+ ..|+||+||+| .|+
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAPFESMQQRFGRVNRFGE 379 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCCHHHHHHHhcccCCCCC
Confidence 688977 54 78999998 22244443 45999999999 454
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=269.21 Aligned_cols=257 Identities=19% Similarity=0.196 Sum_probs=185.4
Q ss_pred HHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 47 EVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 47 ~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
++.+.+++ .|+ +||++|..++|.++.|+|++++||||||||+ |.++++..+.. ++++++||+||++|+.|+++
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~ 141 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVE 141 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHH
Confidence 34445554 488 6999999999999999999999999999996 55666555543 37899999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcch-----HHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH-HH---------
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSM-----DNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FV--------- 189 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~-----~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i--------- 189 (333)
.++.++...++.+..+.|+.+. .++...+.+ .++|+|+||++|.+++. .+..+.++++|+ ..
T Consensus 142 ~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~ 219 (1176)
T PRK09401 142 KLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKN 219 (1176)
T ss_pred HHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccc
Confidence 9999999889888888877542 223334443 59999999999998876 345555777764 11
Q ss_pred ------------HHHh---hcccc------------------------ceeeeecCCChHHH-HHh-hhcCC-cEEEeC-
Q psy18032 190 ------------KELG---KFTKL------------------------QSTCLLGGDSMDNQ-FAR-LHASP-DIVVAT- 226 (333)
Q Consensus 190 ------------~~l~---~~~~~------------------------~~~~l~~sAT~~~~-v~~-l~~~~-~i~~~t- 226 (333)
+++. ..++. ..|+++||||+++. +.. +.+.+ .+.++.
T Consensus 220 id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 220 IDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFEVGSP 299 (1176)
T ss_pred hhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEEecCc
Confidence 1111 11111 57999999999753 432 22222 333332
Q ss_pred ---CCceEEEEEecchhhhhH----------HHHhhcchhh---HHHHHHHhc--CCCccccccc-hHHHhhhCCCCccc
Q psy18032 227 ---PGRFLHIVVEMELKLSSI----------QLSLTDFKQD---TSRIALDLV--GDSTEMIHKQ-RQSVRKWDPAKKKY 287 (333)
Q Consensus 227 ---~~~i~~~~~~~~~k~~~l----------~lif~~~~~~---~~~l~~~L~--g~~~~~lh~~-r~~l~~f~~g~~~v 287 (333)
..++.|.+...+.+...+ .+|||+++++ |+++++.|. |+++..+||. ++.+++|++|+++|
T Consensus 300 ~~~~rnI~~~yi~~~~k~~~L~~ll~~l~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l~~~l~~F~~G~~~V 379 (1176)
T PRK09401 300 VFYLRNIVDSYIVDEDSVEKLVELVKRLGDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGFERKFEKFEEGEVDV 379 (1176)
T ss_pred ccccCCceEEEEEcccHHHHHHHHHHhcCCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcHHHHHHHHHCCCCCE
Confidence 346777776543222222 5899999888 999999997 9999999995 45679999999999
Q ss_pred cccc----c-----CCcccc----cc-------------cccEEEEccCC
Q psy18032 288 VQVT----D-----DTIPLV----LE-------------GRDVVAMARTG 311 (333)
Q Consensus 288 LvaT----d-----~~i~~v----i~-------------~~~~~~~grtG 311 (333)
|||| | -|+|.+ |+ ..+.||+||+=
T Consensus 380 LVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 380 LVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred EEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 9995 5 455553 43 44667788773
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=260.45 Aligned_cols=244 Identities=15% Similarity=0.197 Sum_probs=179.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
+.|++++|++++++.+.+.||+ ++++|.++++.+.+|+|++++||||||||+++.++++..+.. +.++|+++|+
T Consensus 1 ~~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~ 74 (674)
T PRK01172 1 MKISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPL 74 (674)
T ss_pred CcHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEech
Confidence 5799999999999999999998 999999999999999999999999999999999999998765 5689999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh--
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK-- 194 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~-- 194 (333)
++||.|+++.++++. ..|+++...+|+...... ..+.++|+|+||+++..++.+....+.+++++|+ |+.+.
T Consensus 75 raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvVi--DEaH~l~ 148 (674)
T PRK01172 75 RSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVA--DEIHIIG 148 (674)
T ss_pred HHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEE--ecchhcc
Confidence 999999999999864 468888888887654332 2246899999999999888876666788888884 22221
Q ss_pred ----------------ccccceeeeecCCChHH--HHHhhhcCCcEEEe-CCCceE-------EEEEecc----------
Q psy18032 195 ----------------FTKLQSTCLLGGDSMDN--QFARLHASPDIVVA-TPGRFL-------HIVVEME---------- 238 (333)
Q Consensus 195 ----------------~~~~~~~~l~~sAT~~~--~v~~l~~~~~i~~~-t~~~i~-------~~~~~~~---------- 238 (333)
..+...|++++|||+++ .+..+.....+... .|-.+. +.+....
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~ 228 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSL 228 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCccCCCCCCCCeEEEEEecCeeeecccccccccHHHH
Confidence 12346789999999853 34444322111100 010010 0000000
Q ss_pred ----hhhhhHHHHhhcchhhHHHHHHHhcC---------------------------CCcccccc-----chHH-HhhhC
Q psy18032 239 ----LKLSSIQLSLTDFKQDTSRIALDLVG---------------------------DSTEMIHK-----QRQS-VRKWD 281 (333)
Q Consensus 239 ----~k~~~l~lif~~~~~~~~~l~~~L~g---------------------------~~~~~lh~-----~r~~-l~~f~ 281 (333)
.+...-.+|||+++++|+.++..|.. ..+..+|+ +|+. .+.|+
T Consensus 229 i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~ 308 (674)
T PRK01172 229 IKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFR 308 (674)
T ss_pred HHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHH
Confidence 01112258999999999999977741 12455676 3444 48899
Q ss_pred CCCcccccccc
Q psy18032 282 PAKKKYVQVTD 292 (333)
Q Consensus 282 ~g~~~vLvaTd 292 (333)
+|.++|||||+
T Consensus 309 ~g~i~VLvaT~ 319 (674)
T PRK01172 309 NRYIKVIVATP 319 (674)
T ss_pred cCCCeEEEecc
Confidence 99999999998
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=255.06 Aligned_cols=253 Identities=17% Similarity=0.225 Sum_probs=179.6
Q ss_pred HHHHH-HHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 47 EVLKG-VLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 47 ~l~~~-l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.+.+. ...++|+ ||++|.++++.+.++ .|++++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 249 ~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~-----g~q~lilaPT~~L 322 (681)
T PRK10917 249 ELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA-----GYQAALMAPTEIL 322 (681)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc-----CCeEEEEeccHHH
Confidence 44444 4567996 999999999999997 489999999999999999999998765 7899999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~ 195 (333)
|.|+++.+++++...++++..++|+.+..+.. ..+.+ .++|+|+||+++.+ .+.+++++++|+ |+.+++
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVI--DE~Hrf 395 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVII--DEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEE--echhhh
Confidence 99999999999988899999999999865443 33444 49999999987743 456788888884 332221
Q ss_pred ----------cccceeeeecCCChHHHHHhhh--cCCcEEE--eC-CCc--eEEEEEecchhh---h---------hHHH
Q psy18032 196 ----------TKLQSTCLLGGDSMDNQFARLH--ASPDIVV--AT-PGR--FLHIVVEMELKL---S---------SIQL 246 (333)
Q Consensus 196 ----------~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~--~t-~~~--i~~~~~~~~~k~---~---------~l~l 246 (333)
.+...+++++|||..+....+. ...++.. .. +++ +...+....... . .-++
T Consensus 396 g~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~ 475 (681)
T PRK10917 396 GVEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAY 475 (681)
T ss_pred hHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEE
Confidence 1335789999999754432222 1222221 11 222 333333322111 1 1247
Q ss_pred Hhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 247 SLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 247 if~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
+||+.. ..++.+++.|. ++++..+|| +++.+++|++|+++|||||| +++..|+.
T Consensus 476 v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi 555 (681)
T PRK10917 476 VVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI 555 (681)
T ss_pred EEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE
Confidence 788743 34455565554 578999999 34567999999999999999 45555553
Q ss_pred --------cccEEEEccCCC
Q psy18032 301 --------GRDVVAMARTGS 312 (333)
Q Consensus 301 --------~~~~~~~grtG~ 312 (333)
+.+.|++||+|.
T Consensus 556 ~~~~r~gls~lhQ~~GRvGR 575 (681)
T PRK10917 556 ENAERFGLAQLHQLRGRVGR 575 (681)
T ss_pred eCCCCCCHHHHHHHhhcccC
Confidence 334568999993
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=239.42 Aligned_cols=226 Identities=18% Similarity=0.260 Sum_probs=163.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc---cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK---FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
.|+++|+-|++||+.|.++.+++|-. .+.++..++.||....+|...+.++.||+|+||+|+++++..+.+.+..++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~cr 365 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCR 365 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeE
Confidence 57999999999999999997777644 345777789999999999999999999999999999999999999999999
Q ss_pred hhHH-------------HHHHHhhccc------cceeeeecCCChHH-HHH----hhh--------cC-------C-cEE
Q psy18032 184 YTFK-------------FVKELGKFTK------LQSTCLLGGDSMDN-QFA----RLH--------AS-------P-DIV 223 (333)
Q Consensus 184 ~lV~-------------~i~~l~~~~~------~~~~~l~~sAT~~~-~v~----~l~--------~~-------~-~i~ 223 (333)
|+|+ +|..+..-+| .+.|....|||+.. ++. +++ ++ . +++
T Consensus 366 FlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv 445 (725)
T KOG0349|consen 366 FLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVV 445 (725)
T ss_pred EEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccce
Confidence 9996 4444433222 57888999998741 121 221 00 0 111
Q ss_pred E-eCC--C----ceEEEEEec---------------c---hhhh----------------hHHHHhhcchhhHHHHHHHh
Q psy18032 224 V-ATP--G----RFLHIVVEM---------------E---LKLS----------------SIQLSLTDFKQDTSRIALDL 262 (333)
Q Consensus 224 ~-~t~--~----~i~~~~~~~---------------~---~k~~----------------~l~lif~~~~~~~~~l~~~L 262 (333)
. ..| + ++.+++... + ...+ .-+++||.|+.+|+.+-+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 1 011 0 111111100 0 0000 01589999999999999988
Q ss_pred c-----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCCCchhh
Q psy18032 263 V-----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTGSGKTA 316 (333)
Q Consensus 263 ~-----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG~g~~~ 316 (333)
. .+++..+|| +++.++.|+.+.++.|+||| ..+|.+|| ..|+|||||.|....+
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraerm 605 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERM 605 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhc
Confidence 5 478999998 34678999999999999999 46777886 5599999999966666
Q ss_pred HHHhhhhhhccCCCCC
Q psy18032 317 CFLFYFFFRFDRGNFN 332 (333)
Q Consensus 317 ~~~lp~~~~~~~~~~~ 332 (333)
...++++--.-+++|+
T Consensus 606 glaislvat~~ekvwy 621 (725)
T KOG0349|consen 606 GLAISLVATVPEKVWY 621 (725)
T ss_pred ceeEEEeeccchheee
Confidence 6666666555666664
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=247.42 Aligned_cols=260 Identities=20% Similarity=0.244 Sum_probs=196.8
Q ss_pred HHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+...|++ +||..+++-|.++|..+++|+|+++..|||+|||+||++|++-. .+.+|||+|..+|+.+|.+.
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~--------~G~TLVVSPLiSLM~DQV~~ 76 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL--------EGLTLVVSPLISLMKDQVDQ 76 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc--------CCCEEEECchHHHHHHHHHH
Confidence 3455766 59999999999999999999999999999999999999999876 34799999999999999999
Q ss_pred HHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCchhhHH------------HHH
Q psy18032 127 VKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVK 190 (333)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~ 190 (333)
++. .|+.+..+.+..+.+++...+. . ..++|+.+||++..-.....+.--.+..+|+ |.+
T Consensus 77 l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 77 LEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 998 5788988888877776654443 2 3899999999998554444444445555554 555
Q ss_pred HHhhccc-----cceeeeecCCChHHHHHh-----hh-cCCcEEEeCCCc--eEEEEEecc---hhh----------hhH
Q psy18032 191 ELGKFTK-----LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATPGR--FLHIVVEME---LKL----------SSI 244 (333)
Q Consensus 191 ~l~~~~~-----~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~~~--i~~~~~~~~---~k~----------~~l 244 (333)
++.++.. .+..+++++||.++.+.. |. ..+.+++.+..| +...+.... .+. ...
T Consensus 153 ~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~ 232 (590)
T COG0514 153 DYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKS 232 (590)
T ss_pred hHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCC
Confidence 5554321 167889999998876544 22 456677776554 333333211 111 112
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc----------------CCcccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD----------------DTIPLVLE 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd----------------~~i~~vi~ 300 (333)
.+|||.|++.+|.++.+|. |+++..||+ .|+.+ ++|..++++|+|||. .++|..++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~E 312 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIE 312 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHH
Confidence 5899999999999999997 899999998 45555 899999999999997 56777777
Q ss_pred cccEEEEccCC-Cch-hhHHHh
Q psy18032 301 GRDVVAMARTG-SGK-TACFLF 320 (333)
Q Consensus 301 ~~~~~~~grtG-~g~-~~~~~l 320 (333)
+ |||++||+| .|+ +.+++|
T Consensus 313 s-YyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 313 S-YYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred H-HHHHHhhccCCCCcceEEEe
Confidence 8 999999999 454 333333
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-29 Score=263.43 Aligned_cols=239 Identities=17% Similarity=0.163 Sum_probs=173.0
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+++.+.+++ .|| .|+++|.+++|.+++|+|++++||||||||++++++++.... ++.++|||+||++|+.|++
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~-----~g~~aLVl~PTreLa~Qi~ 139 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL-----KGKKCYIILPTTLLVKQTV 139 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh-----cCCeEEEEECHHHHHHHHH
Confidence 445667776 799 599999999999999999999999999999977776665432 3679999999999999999
Q ss_pred HHHHHHhccC--CceEEEEECCcchHHHHH---HhhC-CCCEEEECchHHHHHHHhccccccCchhhHH-----------
Q psy18032 125 KFVKELGKFT--KLQSTCLLGGDSMDNQFA---RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------- 187 (333)
Q Consensus 125 ~~~~~~~~~~--~~~~~~~~g~~~~~~~~~---~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------- 187 (333)
+.++.++... ++.+..++|+.+..++.+ .+.+ .++|||+||++|.+.+... . ..+++++|+
T Consensus 140 ~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 140 EKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccccc
Confidence 9999998765 467778889988776543 3444 4999999999998766532 1 134444443
Q ss_pred ----------HHHHHhh----c-------------------------ccccee-eeecCCChHH--HHHhhhcCC-cEEE
Q psy18032 188 ----------FVKELGK----F-------------------------TKLQST-CLLGGDSMDN--QFARLHASP-DIVV 224 (333)
Q Consensus 188 ----------~i~~l~~----~-------------------------~~~~~~-~l~~sAT~~~--~v~~l~~~~-~i~~ 224 (333)
|.+++.. + ++...| ++++|||++. .+..+.+.+ .+.+
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~f~v 297 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELLGFEV 297 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCeEEEe
Confidence 2222221 1 123344 6789999973 444454444 3333
Q ss_pred eC----CCceEEEEEecch--hhh--h-------HHHHhhcchhh---HHHHHHHhc--CCCccccccch-HHHhhhCCC
Q psy18032 225 AT----PGRFLHIVVEMEL--KLS--S-------IQLSLTDFKQD---TSRIALDLV--GDSTEMIHKQR-QSVRKWDPA 283 (333)
Q Consensus 225 ~t----~~~i~~~~~~~~~--k~~--~-------l~lif~~~~~~---~~~l~~~L~--g~~~~~lh~~r-~~l~~f~~g 283 (333)
+. ..++.|.+...+. +.. . -.+|||++++. |+++++.|. |+++..+|+.| +.+++|++|
T Consensus 298 ~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~R~~~l~~F~~G 377 (1638)
T PRK14701 298 GSGRSALRNIVDVYLNPEKIIKEHVRELLKKLGKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAKNKKGFDLFEEG 377 (1638)
T ss_pred cCCCCCCCCcEEEEEECCHHHHHHHHHHHHhCCCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecchHHHHHHHHHcC
Confidence 32 2357777664321 111 1 14899999886 589999997 99999999954 677999999
Q ss_pred Ccccccccc
Q psy18032 284 KKKYVQVTD 292 (333)
Q Consensus 284 ~~~vLvaTd 292 (333)
+++||||||
T Consensus 378 ~~~VLVaT~ 386 (1638)
T PRK14701 378 EIDYLIGVA 386 (1638)
T ss_pred CCCEEEEec
Confidence 999999995
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=249.80 Aligned_cols=254 Identities=14% Similarity=0.178 Sum_probs=179.9
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.++.++|+ ||+.|.++++.++++ .+.+++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf~-lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPFK-LTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 3455667788995 999999999999987 368999999999999999999998765 7799999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh-
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK- 194 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~- 194 (333)
|.|+++.+++++...++++..++|+.+..++. ..+.+ .++|+|+||+++.+ .+.+++++++|+ |+.++
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVI--DEaH~f 369 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVII--DEQHRF 369 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEE--echhhc
Confidence 99999999999888899999999998766543 33333 48999999987753 356788898884 33222
Q ss_pred ----------ccc--cceeeeecCCChHHHHHhhh--cCCcE--EEe-CCC--ceEEEEEecchhh------------hh
Q psy18032 195 ----------FTK--LQSTCLLGGDSMDNQFARLH--ASPDI--VVA-TPG--RFLHIVVEMELKL------------SS 243 (333)
Q Consensus 195 ----------~~~--~~~~~l~~sAT~~~~v~~l~--~~~~i--~~~-t~~--~i~~~~~~~~~k~------------~~ 243 (333)
... ..++++++|||..+....+. ...++ +.. .++ .+...+...+.+. ..
T Consensus 370 g~~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~ 449 (630)
T TIGR00643 370 GVEQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGR 449 (630)
T ss_pred cHHHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCC
Confidence 222 25789999999654332221 11111 111 122 2333333222111 11
Q ss_pred HHHHhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 244 IQLSLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 244 l~lif~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
..++||+.. +.++.+++.|. ++++..+|| +++.+++|++|+.+|||||| +++..
T Consensus 450 q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~ 529 (630)
T TIGR00643 450 QAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATV 529 (630)
T ss_pred cEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcE
Confidence 246777654 44556665553 778999998 34567999999999999999 44555
Q ss_pred ccc--------cccEEEEccCCC
Q psy18032 298 VLE--------GRDVVAMARTGS 312 (333)
Q Consensus 298 vi~--------~~~~~~~grtG~ 312 (333)
|+. +.+.|++||+|.
T Consensus 530 VIi~~~~r~gls~lhQ~~GRvGR 552 (630)
T TIGR00643 530 MVIEDAERFGLSQLHQLRGRVGR 552 (630)
T ss_pred EEEeCCCcCCHHHHHHHhhhccc
Confidence 553 334569999994
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-30 Score=264.71 Aligned_cols=243 Identities=17% Similarity=0.227 Sum_probs=173.4
Q ss_pred EECCCCcHHHHHHHHHHHHHhhhhc--------ccCCceEEEEcccHHHHHHHHHHHHHHh------------ccCCceE
Q psy18032 79 AMARTGSGKTACFLIPMLEKLKTHA--------ATSGVRALILSPTRELALQTFKFVKELG------------KFTKLQS 138 (333)
Q Consensus 79 ~~a~TGsGKT~~~~l~~l~~l~~~~--------~~~~~~~lil~Pt~~L~~q~~~~~~~~~------------~~~~~~~ 138 (333)
++||||||||+||++|+++++.... ..++.++|||+|+++|++|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987642 1246899999999999999999987521 1357899
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc-ccccCchhhHH-----------------HHHHHhhccccce
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME-LKLSSIQYTFK-----------------FVKELGKFTKLQS 200 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~-~~~~~l~~lV~-----------------~i~~l~~~~~~~~ 200 (333)
...+|+.+.+++.+.+.+.++|||+|||+|..++.++. ..+++++++|+ .+..+..+.+...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999988877778889999999999998876543 46899999995 2333444556678
Q ss_pred eeeecCCChHH--HHHhhhc--CCcEEEeCCC----ceEEEEEecc-------------------h--------------
Q psy18032 201 TCLLGGDSMDN--QFARLHA--SPDIVVATPG----RFLHIVVEME-------------------L-------------- 239 (333)
Q Consensus 201 ~~l~~sAT~~~--~v~~l~~--~~~i~~~t~~----~i~~~~~~~~-------------------~-------------- 239 (333)
|.+++|||+.+ ++.++.. .+..++..+. .+...+...+ .
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 99999999975 4555442 2333332221 1211111000 0
Q ss_pred -hhhhHHHHhhcchhhHHHHHHHhcCC-----------------------------------Ccccccc-----ch-HHH
Q psy18032 240 -KLSSIQLSLTDFKQDTSRIALDLVGD-----------------------------------STEMIHK-----QR-QSV 277 (333)
Q Consensus 240 -k~~~l~lif~~~~~~~~~l~~~L~g~-----------------------------------~~~~lh~-----~r-~~l 277 (333)
......+||||+++.|+.++..|... .+..+|| +| ...
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 00112489999999999999877521 1345677 34 445
Q ss_pred hhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC---CchhhHHHhh
Q psy18032 278 RKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG---SGKTACFLFY 321 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG---~g~~~~~~lp 321 (333)
++|++|++++||||+ .+++.||+ ..|+||+||+| .|...++++|
T Consensus 321 ~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p 382 (1490)
T PRK09751 321 QALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFP 382 (1490)
T ss_pred HHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEe
Confidence 999999999999998 56677776 66999999999 3333444444
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-27 Score=205.58 Aligned_cols=179 Identities=44% Similarity=0.720 Sum_probs=156.3
Q ss_pred ccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|+++++++.+.+.|.+.|+..|+++|.++++.+.+|+|+++++|||+|||++|++|+++.+......++++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 88999999999999999999999999999999999999999999999999999999999988753245789999999999
Q ss_pred HHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------
Q psy18032 119 LALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------- 187 (333)
Q Consensus 119 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------- 187 (333)
|+.|+.+.++.+....++.+..+.|+....+....+.++++|+|+||+++.+++.+....+++++++|+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 999999999999888889999999999887777777678999999999999999988888888888885
Q ss_pred --HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 --FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 --~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...+.+++|||+++.+..+.
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHH
Confidence 122223334457899999999998776653
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=249.36 Aligned_cols=239 Identities=19% Similarity=0.164 Sum_probs=170.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 45 GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
..++.+.+.+.....|+++|..++|.++.|+|++++||||||||+ |.+|++..+.. ++++++||+||++||.|++
T Consensus 64 ~~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 64 LKEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHH
Confidence 344566666644446999999999999999999999999999997 77777766544 3689999999999999999
Q ss_pred HHHHHHhccCCceEE---EEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH----------
Q psy18032 125 KFVKELGKFTKLQST---CLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------- 187 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~---~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------- 187 (333)
+.++.++...++.+. .++|+.+..++. ..+.+ +++|+|+||++|.+.+..-. . +++++|+
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhhcc
Confidence 999999888776654 457887766543 33444 59999999999998776521 1 5556553
Q ss_pred -----------HHHH-Hhh-------------------------cccccee--eeecCCC-hHHHHHh-hhcCC-cEEEe
Q psy18032 188 -----------FVKE-LGK-------------------------FTKLQST--CLLGGDS-MDNQFAR-LHASP-DIVVA 225 (333)
Q Consensus 188 -----------~i~~-l~~-------------------------~~~~~~~--~l~~sAT-~~~~v~~-l~~~~-~i~~~ 225 (333)
|.++ +.. ..+...| +++|||| .+..+.. +.+.. .+.++
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~ 295 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVG 295 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEec
Confidence 1111 111 1123333 5679999 5554432 22222 33343
Q ss_pred C----CCceEEEEEecchhhhhH----------HHHhhcch---hhHHHHHHHhc--CCCccccccc--hHHHhhhCCCC
Q psy18032 226 T----PGRFLHIVVEMELKLSSI----------QLSLTDFK---QDTSRIALDLV--GDSTEMIHKQ--RQSVRKWDPAK 284 (333)
Q Consensus 226 t----~~~i~~~~~~~~~k~~~l----------~lif~~~~---~~~~~l~~~L~--g~~~~~lh~~--r~~l~~f~~g~ 284 (333)
. ..++.+.+...+.+...+ .+|||+++ +.|++++..|. |+++..+||. .+.+++|++|+
T Consensus 296 ~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~~~l~~Fr~G~ 375 (1171)
T TIGR01054 296 GGSDTLRNVVDVYVEDEDLKETLLEIVKKLGTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPKEDYEKFAEGE 375 (1171)
T ss_pred CccccccceEEEEEecccHHHHHHHHHHHcCCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCHHHHHHHHcCC
Confidence 2 346777775443211111 48999999 99999999997 8999999994 46789999999
Q ss_pred ccccccc
Q psy18032 285 KKYVQVT 291 (333)
Q Consensus 285 ~~vLvaT 291 (333)
++|||||
T Consensus 376 ~~vLVat 382 (1171)
T TIGR01054 376 IDVLIGV 382 (1171)
T ss_pred CCEEEEe
Confidence 9999996
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.2e-27 Score=217.11 Aligned_cols=252 Identities=19% Similarity=0.186 Sum_probs=200.4
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.-...+++++++.+.+.|+..|++.+.|+|.-++.+ +++|+|.+++++|+||||++.-++-+..+.. .|.+-|++
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfL 267 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFL 267 (830)
T ss_pred ccccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEE
Confidence 346788999999999999999999999999999999 9999999999999999999999999998887 47789999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH----hhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR----LHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+|..+||+|-++.|++-...+|+++..-+|-...+...+- ....++|+|+|-+-+-.+++.+ -++.++..+|+
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 9999999999999998667789999888887655543221 1225899999999999999887 67888999885
Q ss_pred ---------------HHHHHhhccccceeeeecCCChH--HHHHh-hhcCCcEEEeCCCceEEEEEec---chhhhhH--
Q psy18032 188 ---------------FVKELGKFTKLQSTCLLGGDSMD--NQFAR-LHASPDIVVATPGRFLHIVVEM---ELKLSSI-- 244 (333)
Q Consensus 188 ---------------~i~~l~~~~~~~~~~l~~sAT~~--~~v~~-l~~~~~i~~~t~~~i~~~~~~~---~~k~~~l-- 244 (333)
.|..++.+.| ..|.++.|||+. .++.+ +.-.....-..|-.+..|+... ..|.+.+
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~-~AQ~i~LSATVgNp~elA~~l~a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~ 425 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFP-GAQFIYLSATVGNPEELAKKLGAKLVLYDERPVPLERHLVFARNESEKWDIIAR 425 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCC-CCeEEEEEeecCChHHHHHHhCCeeEeecCCCCChhHeeeeecCchHHHHHHHH
Confidence 3333444444 689999999984 44433 3333333333444454444332 2333322
Q ss_pred -----------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc
Q psy18032 245 -----------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 245 -----------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd 292 (333)
++||.++++.|.++++.|. |+++..||+ +|+.+ ..|.++++.++|+|.
T Consensus 426 L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 426 LVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 5999999999999999996 999999997 56666 889999999999996
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=231.62 Aligned_cols=267 Identities=22% Similarity=0.264 Sum_probs=195.6
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
....+..++.+.|+..|+++|.+|+..+.+|+|++|+.|||||||+||++|+++.+...+ ..++|+|.||++||++|
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~---~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDP---SARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCc---CccEEEEechhhhHhhH
Confidence 345568888899999999999999999999999999999999999999999999999843 34899999999999999
Q ss_pred HHHHHHHhccCC--ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc----ccccCchhhHH----------
Q psy18032 124 FKFVKELGKFTK--LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME----LKLSSIQYTFK---------- 187 (333)
Q Consensus 124 ~~~~~~~~~~~~--~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~----~~~~~l~~lV~---------- 187 (333)
.+.++++....+ +.+....|++...+......+.|+||+++|.+|..++-... ..+++++|||+
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999988776 77777888888877767778889999999999987554332 45778999995
Q ss_pred ------HHHHHhhc---cccceeeeecCCChHH---HHHhhhcCCcEE-E---eCCCceEEEEEecc-----------hh
Q psy18032 188 ------FVKELGKF---TKLQSTCLLGGDSMDN---QFARLHASPDIV-V---ATPGRFLHIVVEME-----------LK 240 (333)
Q Consensus 188 ------~i~~l~~~---~~~~~~~l~~sAT~~~---~v~~l~~~~~i~-~---~t~~~i~~~~~~~~-----------~k 240 (333)
.+..+.++ .+...|+++.|||+.+ ...++....... + +.|....+++.... .+
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccch
Confidence 33333333 3468899999999853 334443332222 2 22333333332211 11
Q ss_pred hhh-------------HHHHhhcchhhHHHHH----HHhc--C----CCcccccc-----chHHH-hhhCCCCccccccc
Q psy18032 241 LSS-------------IQLSLTDFKQDTSRIA----LDLV--G----DSTEMIHK-----QRQSV-RKWDPAKKKYVQVT 291 (333)
Q Consensus 241 ~~~-------------l~lif~~~~~~~~~l~----~~L~--g----~~~~~lh~-----~r~~l-~~f~~g~~~vLvaT 291 (333)
... ..++|+++++.++.+. ..+. + .++..+++ +|..+ .+|++|++.++++|
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st 371 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIAT 371 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecc
Confidence 111 1478999999999986 2332 3 34555555 44444 89999999999999
Q ss_pred c----------------CCcccccccccEEEEccCC-Cc
Q psy18032 292 D----------------DTIPLVLEGRDVVAMARTG-SG 313 (333)
Q Consensus 292 d----------------~~i~~vi~~~~~~~~grtG-~g 313 (333)
. ..+|.+--..+.||.||+| .|
T Consensus 372 ~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~ 410 (851)
T COG1205 372 NALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRG 410 (851)
T ss_pred hhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCC
Confidence 7 3344421234889999999 45
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=225.21 Aligned_cols=246 Identities=15% Similarity=0.093 Sum_probs=170.7
Q ss_pred HHHHhHHHHHhcCCcEEEECCCCcHHHHH---------HHHHHHHHhhhh-cccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 62 PIQRKTIPLVLEGRDVVAMARTGSGKTAC---------FLIPMLEKLKTH-AATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 62 ~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~---------~~l~~l~~l~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+|+++++.+++|+|++++|+||||||.+ |++|.+..+..- +...++++++++|+++||.|+...+.+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999987 555566554321 12235689999999999999999988755
Q ss_pred cc---CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHH--------------hh
Q psy18032 132 KF---TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKEL--------------GK 194 (333)
Q Consensus 132 ~~---~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l--------------~~ 194 (333)
.+ .+..+.+.+||.+. .+......+.+|+++||...+ ..+++++++|+ |+. ..
T Consensus 247 g~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVI--DEaHEr~~~~DllL~llk~ 316 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVII--DEVHEHDQIGDIIIAVARK 316 (675)
T ss_pred CccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcccc-------cccccCCEEEc--cccccCccchhHHHHHHHH
Confidence 44 46778888999873 222223336899999976311 24667777774 221 12
Q ss_pred ccccceeeeecCCChHHHHHhh---hcCCcEE-EeC--CCceEEEEEecc------------hh---------h----hh
Q psy18032 195 FTKLQSTCLLGGDSMDNQFARL---HASPDIV-VAT--PGRFLHIVVEME------------LK---------L----SS 243 (333)
Q Consensus 195 ~~~~~~~~l~~sAT~~~~v~~l---~~~~~i~-~~t--~~~i~~~~~~~~------------~k---------~----~~ 243 (333)
..+..+|++++|||+++.+..+ ..++..+ +.. ...+.+++.... .+ . ..
T Consensus 317 ~~~~~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g 396 (675)
T PHA02653 317 HIDKIRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGS 396 (675)
T ss_pred hhhhcCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCC
Confidence 2233469999999998655443 3444333 321 123455543211 00 0 01
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc---ch-HHHhhh-CCCCcccccccc--------CCccccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK---QR-QSVRKW-DPAKKKYVQVTD--------DTIPLVLEG----- 301 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~---~r-~~l~~f-~~g~~~vLvaTd--------~~i~~vi~~----- 301 (333)
-.+||++++++++.+++.|. ++.+..+|| ++ +.+++| ++|+.+|||||| +++..||+.
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~ 476 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNIDEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYV 476 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHHHHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccC
Confidence 25899999999999999886 578999999 33 556787 799999999999 667777652
Q ss_pred --------------ccEEEEccCC---CchhhH
Q psy18032 302 --------------RDVVAMARTG---SGKTAC 317 (333)
Q Consensus 302 --------------~~~~~~grtG---~g~~~~ 317 (333)
.+.||+|||| .|+...
T Consensus 477 p~~~~g~~~~iSkasa~QRaGRAGR~~~G~c~r 509 (675)
T PHA02653 477 PEPFGGKEMFISKSMRTQRKGRVGRVSPGTYVY 509 (675)
T ss_pred CCcccCcccccCHHHHHHhccCcCCCCCCeEEE
Confidence 4689999999 565443
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=209.66 Aligned_cols=257 Identities=17% Similarity=0.204 Sum_probs=185.3
Q ss_pred HHHHHHHh-CCCCCC-cHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 47 EVLKGVLK-RGYKIP-TPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 47 ~l~~~l~~-~g~~~~-~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.+-++|++ +|++++ ++.|..++..+.++ +||.|++|||+||++||+||.|.. +..+||++|..+|+.++
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~--------~gITIV~SPLiALIkDQ 77 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH--------GGITIVISPLIALIKDQ 77 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh--------CCeEEEehHHHHHHHHH
Confidence 35567776 587766 89999999998776 699999999999999999999876 55899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhh------CCCCEEEECchHHHHHHHh----ccccccCchhhHH------
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLH------ASPDIVVATPGRFLHIVVE----MELKLSSIQYTFK------ 187 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~------~~~~IlI~TP~rll~~l~~----~~~~~~~l~~lV~------ 187 (333)
.+.+.+ +.+.+..+.+..+..++.+.+. ....+|+.|||.-..-..+ ....-+-++|+|+
T Consensus 78 iDHL~~----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCV 153 (641)
T KOG0352|consen 78 IDHLKR----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCV 153 (641)
T ss_pred HHHHHh----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhH
Confidence 999998 4677777777777766655542 2478999999976533322 2334556777775
Q ss_pred ------HHHHHhhccc-----cceeeeecCCChHHHHHhh------hcCCcEEEeCCC-ceEEEEE--------------
Q psy18032 188 ------FVKELGKFTK-----LQSTCLLGGDSMDNQFARL------HASPDIVVATPG-RFLHIVV-------------- 235 (333)
Q Consensus 188 ------~i~~l~~~~~-----~~~~~l~~sAT~~~~v~~l------~~~~~i~~~t~~-~i~~~~~-------------- 235 (333)
|.+|+.++.. .....+..+||.+.++.+- .+.|.-+..||. |-..+|.
T Consensus 154 SQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~L 233 (641)
T KOG0352|consen 154 SQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVL 233 (641)
T ss_pred hhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhH
Confidence 6677665543 2466788899988777542 144444444553 1111110
Q ss_pred -----e----------cchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCcccccccc
Q psy18032 236 -----E----------MELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 236 -----~----------~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaTd 292 (333)
. .........||||.|+.+||+++-.|. |+++..||+ +|. .-++|.++++.|++||.
T Consensus 234 aDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~ 313 (641)
T KOG0352|consen 234 ADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATV 313 (641)
T ss_pred HHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEe
Confidence 0 000111225999999999999998775 999999996 443 34999999999999996
Q ss_pred --------CCcccccc-------cccEEEEccCC-Cchh
Q psy18032 293 --------DTIPLVLE-------GRDVVAMARTG-SGKT 315 (333)
Q Consensus 293 --------~~i~~vi~-------~~~~~~~grtG-~g~~ 315 (333)
+++..|+. +-|||+.||+| .||.
T Consensus 314 SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~ 352 (641)
T KOG0352|consen 314 SFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKR 352 (641)
T ss_pred ccccccCCcceeEEEecCchhhhHHHHHhccccccCCCc
Confidence 44444543 33999999999 6763
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-25 Score=220.26 Aligned_cols=235 Identities=16% Similarity=0.213 Sum_probs=172.8
Q ss_pred HHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEEE
Q psy18032 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~ 142 (333)
-.+.+..+.++++++++||||||||.+|.+++++.... +++++++.|+|++|.|+++.+. .++...|..+...+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 34566677788999999999999999999999986432 3589999999999999999985 45666777887777
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeeecCC
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~~sA 207 (333)
++.+... ++.+|+|+||++|++++.. ...+++++++|+ ++.++.+.++...+++++||
T Consensus 85 r~~~~~~------~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 85 RAESKVG------PNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred cCccccC------CCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 7664322 3568999999999998875 467899999995 12223333455789999999
Q ss_pred ChHHH-HHhhhcCCcEEEeCCCc---eEEEEEec--chhhh---------------hHHHHhhcchhhHHHHHHHhc---
Q psy18032 208 SMDNQ-FARLHASPDIVVATPGR---FLHIVVEM--ELKLS---------------SIQLSLTDFKQDTSRIALDLV--- 263 (333)
Q Consensus 208 T~~~~-v~~l~~~~~i~~~t~~~---i~~~~~~~--~~k~~---------------~l~lif~~~~~~~~~l~~~L~--- 263 (333)
|++.. +..+..++.++. .+++ +.++|... ..+.. .-.+||++++++++.+++.|.
T Consensus 158 Tl~~~~l~~~~~~~~~I~-~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~ 236 (812)
T PRK11664 158 TLDNDRLQQLLPDAPVIV-SEGRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRV 236 (812)
T ss_pred CCCHHHHHHhcCCCCEEE-ecCccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhc
Confidence 99754 444444333322 2332 44444322 11111 115899999999999998885
Q ss_pred --CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------------------------cc
Q psy18032 264 --GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------------------------GR 302 (333)
Q Consensus 264 --g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------------------------~~ 302 (333)
++.+..+|| +++.++.|++|+.+|||||| +++..||+ +.
T Consensus 237 ~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 316 (812)
T PRK11664 237 ASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQAS 316 (812)
T ss_pred cCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhh
Confidence 466778998 34567999999999999999 66777776 24
Q ss_pred cEEEEccCC
Q psy18032 303 DVVAMARTG 311 (333)
Q Consensus 303 ~~~~~grtG 311 (333)
+.||.||+|
T Consensus 317 a~QR~GRaG 325 (812)
T PRK11664 317 MTQRAGRAG 325 (812)
T ss_pred hhhhccccC
Confidence 789999999
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=210.08 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|..+++.++.|+ ++.+.||+|||++|.+|++..... |++++|++||++||.|.++.+..+.+++
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~-----G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA-----GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc-----CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 4766 9999999999999999 999999999999999999988665 7799999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.+++|+.+.. .+....+++|+|+|...+-
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~ 204 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELV 204 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchh
Confidence 99999999998654 3444568999999998773
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-24 Score=214.43 Aligned_cols=240 Identities=16% Similarity=0.215 Sum_probs=173.1
Q ss_pred HHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEEE
Q psy18032 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~~ 142 (333)
-.+.+..+.++.+++++|+||||||.+|.+++++.... +++++++.|+|++|.|+++.+. .++...|..+...+
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~v 81 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRV 81 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEE
Confidence 34566677778999999999999999999999987632 4689999999999999999885 45555666676666
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeeecCC
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~~sA 207 (333)
++.+. ...+.+|+|+||++|++++.. ...+++++++|+ +..++...++...+++++||
T Consensus 82 r~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 82 RGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 55432 234689999999999998876 457888888885 12223333456789999999
Q ss_pred ChHHH-HHhhhcCCcEEEeCCCc---eEEEEEecc--hhh---------------hhHHHHhhcchhhHHHHHHHhc---
Q psy18032 208 SMDNQ-FARLHASPDIVVATPGR---FLHIVVEME--LKL---------------SSIQLSLTDFKQDTSRIALDLV--- 263 (333)
Q Consensus 208 T~~~~-v~~l~~~~~i~~~t~~~---i~~~~~~~~--~k~---------------~~l~lif~~~~~~~~~l~~~L~--- 263 (333)
|++.. +..+..++.++. .+++ +.++|.... .+. ..-.+||++++++++.+++.|.
T Consensus 155 Tl~~~~l~~~l~~~~vI~-~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~ 233 (819)
T TIGR01970 155 TLDGERLSSLLPDAPVVE-SEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERL 233 (819)
T ss_pred CCCHHHHHHHcCCCcEEE-ecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhc
Confidence 99754 344443333332 2332 344443221 111 0115899999999999998885
Q ss_pred --CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------------------------cc
Q psy18032 264 --GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------------------------GR 302 (333)
Q Consensus 264 --g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------------------------~~ 302 (333)
++.+..+|| |.+.++.|++|+.+|||||| +++..||+ +.
T Consensus 234 ~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkas 313 (819)
T TIGR01970 234 DSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQAS 313 (819)
T ss_pred CCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHH
Confidence 467888998 34567999999999999999 66777776 12
Q ss_pred cEEEEccCC---Cchhh
Q psy18032 303 DVVAMARTG---SGKTA 316 (333)
Q Consensus 303 ~~~~~grtG---~g~~~ 316 (333)
+.||.||+| .|...
T Consensus 314 a~QR~GRAGR~~~G~cy 330 (819)
T TIGR01970 314 ATQRAGRAGRLEPGVCY 330 (819)
T ss_pred HHhhhhhcCCCCCCEEE
Confidence 579999999 45443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-25 Score=220.82 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=190.3
Q ss_pred HHHHHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 47 EVLKGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 47 ~l~~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+....+. .+|.+.+++-|.++|...+.|+|+++.+|||.||++||++|++-. ++-+|||+|..+|+++|..
T Consensus 251 ~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 251 ELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHH
Confidence 3444444 579999999999999999999999999999999999999998764 5589999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcchHHHHHH---hhC---CCCEEEECchHHHHHH--HhccccccC---chhhHH-------
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA---SPDIVVATPGRFLHIV--VEMELKLSS---IQYTFK------- 187 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~---~~~IlI~TP~rll~~l--~~~~~~~~~---l~~lV~------- 187 (333)
.+.. .++....+.++....++... +.+ .++|++.|||++...- .....++.. +.++|+
T Consensus 323 ~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS 398 (941)
T KOG0351|consen 323 HLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS 398 (941)
T ss_pred hhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh
Confidence 8854 68999999999887655333 333 4899999999987422 222223333 444443
Q ss_pred -----HHHHHhhccc-----cceeeeecCCChHHHHHh-----hh-cCCcEEEeCCC--ceEEEEEecchhhh-------
Q psy18032 188 -----FVKELGKFTK-----LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATPG--RFLHIVVEMELKLS------- 242 (333)
Q Consensus 188 -----~i~~l~~~~~-----~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~~--~i~~~~~~~~~k~~------- 242 (333)
|.+++.++.- ....++..+||.+..+.+ |. .++.+...... ++.+.+.....+..
T Consensus 399 qWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~ 478 (941)
T KOG0351|consen 399 QWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEE 478 (941)
T ss_pred hhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHH
Confidence 6666554321 136788899998766544 22 45556655443 45555544331111
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc---------------
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD--------------- 292 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd--------------- 292 (333)
...||||.++++|+.++..|+ |++++.||+ +|+.+ .+|..++++|+|||-
T Consensus 479 ~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~Vi 558 (941)
T KOG0351|consen 479 SKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVI 558 (941)
T ss_pred hhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEE
Confidence 115999999999999999997 889999997 56666 999999999999995
Q ss_pred -CCcccccccccEEEEccCC-Cc
Q psy18032 293 -DTIPLVLEGRDVVAMARTG-SG 313 (333)
Q Consensus 293 -~~i~~vi~~~~~~~~grtG-~g 313 (333)
..+|..+|+ |||.+||+| .|
T Consensus 559 H~~lPks~E~-YYQE~GRAGRDG 580 (941)
T KOG0351|consen 559 HYSLPKSFEG-YYQEAGRAGRDG 580 (941)
T ss_pred ECCCchhHHH-HHHhccccCcCC
Confidence 567777788 999999999 55
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-24 Score=197.23 Aligned_cols=239 Identities=14% Similarity=0.107 Sum_probs=155.0
Q ss_pred HHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC----Cc
Q psy18032 63 IQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT----KL 136 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~ 136 (333)
+|.++++++.++.+ ++++||||||||+||++|++.. +.++++++|+++|++|+++.++.+.... ++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999975 8899999999999999999852 3468999999999999999999876432 45
Q ss_pred eEEEEECCcchH--HH-----------------H-HHhhCCCCEEEECchHHHHHHHhccc--------cccCchhhHHH
Q psy18032 137 QSTCLLGGDSMD--NQ-----------------F-ARLHASPDIVVATPGRFLHIVVEMEL--------KLSSIQYTFKF 188 (333)
Q Consensus 137 ~~~~~~g~~~~~--~~-----------------~-~~l~~~~~IlI~TP~rll~~l~~~~~--------~~~~l~~lV~~ 188 (333)
.+..+.|....+ .. . ....+.++|+++||+.+..++..... .+..+.++|+
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~- 151 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF- 151 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE-
Confidence 555556642221 00 0 11123688999999998766543211 1467777774
Q ss_pred HHHHhhc--------------------cccceeeeecCCChHHHHHhhhcC------CcEEE-eC--------------C
Q psy18032 189 VKELGKF--------------------TKLQSTCLLGGDSMDNQFARLHAS------PDIVV-AT--------------P 227 (333)
Q Consensus 189 i~~l~~~--------------------~~~~~~~l~~sAT~~~~v~~l~~~------~~i~~-~t--------------~ 227 (333)
|+++.+ .....+++++|||+++.+...... +.+.+ +. +
T Consensus 152 -DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 152 -DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNK 230 (357)
T ss_pred -ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccc
Confidence 222211 122468999999998775543211 11111 11 1
Q ss_pred --------CceEEEEEec-chhh------------------hhHHHHhhcchhhHHHHHHHhc----CCCccccccchHH
Q psy18032 228 --------GRFLHIVVEM-ELKL------------------SSIQLSLTDFKQDTSRIALDLV----GDSTEMIHKQRQS 276 (333)
Q Consensus 228 --------~~i~~~~~~~-~~k~------------------~~l~lif~~~~~~~~~l~~~L~----g~~~~~lh~~r~~ 276 (333)
+.+.+.+... ..+. ..-.+|||++++.+++++..|+ ++.+..+||....
T Consensus 231 ~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~ 310 (357)
T TIGR03158 231 TQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPK 310 (357)
T ss_pred ccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCH
Confidence 1344433321 1000 0125899999999999999997 2467788983222
Q ss_pred HhhhCCCCcccccccc-----CCccc--cc-c----cccEEEEccCC
Q psy18032 277 VRKWDPAKKKYVQVTD-----DTIPL--VL-E----GRDVVAMARTG 311 (333)
Q Consensus 277 l~~f~~g~~~vLvaTd-----~~i~~--vi-~----~~~~~~~grtG 311 (333)
-++.+.++.++||||| -|++. ++ + ..|+||+||||
T Consensus 311 ~~R~~~~~~~iLVaTdv~~rGiDi~~~~vi~~p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 311 KDRERAMQFDILLGTSTVDVGVDFKRDWLIFSARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHhccCCEEEEecHHhcccCCCCceEEECCCCHHHHhhhcccCC
Confidence 2233456899999999 22221 11 1 45999999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.91 E-value=6e-24 Score=198.17 Aligned_cols=234 Identities=20% Similarity=0.192 Sum_probs=147.5
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcch--------
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSM-------- 147 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~-------- 147 (333)
|++++||||||||++|++|++..+.. ..+.+++|++|+++|+.|+++.+..+.. -.+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~---~~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS---QKADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh---CCCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhccCC
Confidence 68999999999999999999988654 2356899999999999999999998632 133344443221
Q ss_pred ----HHHHHHh-h-----CCCCEEEECchHHHHHHHhc----cccccC--chhhHH------------HHHHHhhcc-cc
Q psy18032 148 ----DNQFARL-H-----ASPDIVVATPGRFLHIVVEM----ELKLSS--IQYTFK------------FVKELGKFT-KL 198 (333)
Q Consensus 148 ----~~~~~~l-~-----~~~~IlI~TP~rll~~l~~~----~~~~~~--l~~lV~------------~i~~l~~~~-~~ 198 (333)
....... . ...+|+++||++++..+... ...+.. .+++|+ ++..+...+ ..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~ 154 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDN 154 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHc
Confidence 0000111 1 13679999999998776651 111111 133442 122222222 34
Q ss_pred ceeeeecCCChHHHHHhhhcCCcEE--EeCCC-----ce-EEEEE--ec--chhhh------------hHHHHhhcchhh
Q psy18032 199 QSTCLLGGDSMDNQFARLHASPDIV--VATPG-----RF-LHIVV--EM--ELKLS------------SIQLSLTDFKQD 254 (333)
Q Consensus 199 ~~~~l~~sAT~~~~v~~l~~~~~i~--~~t~~-----~i-~~~~~--~~--~~k~~------------~l~lif~~~~~~ 254 (333)
..|++++|||+++.+..+....... ...+. +. .+.+. .. ..+.. .-.+|||++++.
T Consensus 155 ~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 155 DVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCCEEEEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 6899999999998887765322111 11111 11 11111 10 11111 125889999999
Q ss_pred HHHHHHHhc--CC--Ccccccc-----chH-----HHhhhCCCCcccccccc-----CCc--ccccc-----cccEEEEc
Q psy18032 255 TSRIALDLV--GD--STEMIHK-----QRQ-----SVRKWDPAKKKYVQVTD-----DTI--PLVLE-----GRDVVAMA 308 (333)
Q Consensus 255 ~~~l~~~L~--g~--~~~~lh~-----~r~-----~l~~f~~g~~~vLvaTd-----~~i--~~vi~-----~~~~~~~g 308 (333)
|+.++..|. +. .+..+|| +|+ .+++|++|+.++||||| -|+ +.+++ ..|+||+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~~~~~~~~~iqr~G 314 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMITELAPIDSLIQRLG 314 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEEcCCCHHHHHHHhc
Confidence 999999995 33 4889998 222 36899999999999999 222 33332 45999999
Q ss_pred cCC-Cchh
Q psy18032 309 RTG-SGKT 315 (333)
Q Consensus 309 rtG-~g~~ 315 (333)
|+| .|+.
T Consensus 315 R~gR~g~~ 322 (358)
T TIGR01587 315 RLHRYGRK 322 (358)
T ss_pred cccCCCCC
Confidence 999 4544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-24 Score=207.22 Aligned_cols=256 Identities=13% Similarity=0.033 Sum_probs=169.2
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.-.|+++|.++++.++.+.+.++++|||+|||+++...+...+.. .+.++|||+||++|+.|..+.+++++...+.
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~----~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN----YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 347999999999999999999999999999999765432222222 2448999999999999999999998765555
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCC
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGD 207 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sA 207 (333)
.+..+.+|.... .+++|+|+||+++..... ..++++.++|+ ....+...++...+.+++||
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGLTA 257 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGLTG 257 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccchhHHHHHHhhhccceEEEEec
Confidence 565666665432 357899999999876442 23567777774 11222222334567899999
Q ss_pred ChHHHHH-------------------hhhc-----CCcEEEeC---C-CceEE-----------EEEecchhhh------
Q psy18032 208 SMDNQFA-------------------RLHA-----SPDIVVAT---P-GRFLH-----------IVVEMELKLS------ 242 (333)
Q Consensus 208 T~~~~v~-------------------~l~~-----~~~i~~~t---~-~~i~~-----------~~~~~~~k~~------ 242 (333)
|..+... ++.+ .+.+.... + ..... .+.+.+.+..
T Consensus 258 Tp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~ 337 (501)
T PHA02558 258 SLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLA 337 (501)
T ss_pred cCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHH
Confidence 9853211 0111 01111100 0 00000 0001000111
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH-HHhhhCCCCccccccc-c--------CCcccc
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ-SVRKWDPAKKKYVQVT-D--------DTIPLV 298 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~-~l~~f~~g~~~vLvaT-d--------~~i~~v 298 (333)
.-.+||++.++.++.+++.|. |.++..+|| +|+ .++.|++|+..+|||| + ++++.+
T Consensus 338 ~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 338 LKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred HHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 113677788889999999997 889999998 343 4588899999999998 5 555666
Q ss_pred cc-------cccEEEEccCC---CchhhHHHhhhhhhc
Q psy18032 299 LE-------GRDVVAMARTG---SGKTACFLFYFFFRF 326 (333)
Q Consensus 299 i~-------~~~~~~~grtG---~g~~~~~~lp~~~~~ 326 (333)
+. ..|+||+||+| .||..+.++=+.+.+
T Consensus 418 Il~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~ 455 (501)
T PHA02558 418 IFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDL 455 (501)
T ss_pred EEecCCcchhhhhhhhhccccCCCCCceEEEEEeeccc
Confidence 63 55889999998 678777766554443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-23 Score=169.99 Aligned_cols=152 Identities=28% Similarity=0.478 Sum_probs=125.3
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 140 (333)
||+|.++++.+.+|+|++++||||+|||++|.+|+++.+... +..++++++|+++|+.|+++.++.++...++++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999998873 23489999999999999999999998888899999
Q ss_pred EECCcchH-HHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----------HHHH---Hhhccc--cceeeee
Q psy18032 141 LLGGDSMD-NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------FVKE---LGKFTK--LQSTCLL 204 (333)
Q Consensus 141 ~~g~~~~~-~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------~i~~---l~~~~~--~~~~~l~ 204 (333)
++|+.... +....+.++++|+|+||+++.+++......+.+++++|+ +... +.+... .+.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~ 157 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIIL 157 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEE
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEE
Confidence 99998865 444555567999999999999999986667777888885 1111 222221 2588999
Q ss_pred cCCChHHHHHh
Q psy18032 205 GGDSMDNQFAR 215 (333)
Q Consensus 205 ~sAT~~~~v~~ 215 (333)
+|||+++.++.
T Consensus 158 ~SAT~~~~~~~ 168 (169)
T PF00270_consen 158 LSATLPSNVEK 168 (169)
T ss_dssp EESSSTHHHHH
T ss_pred EeeCCChhHhh
Confidence 99999976654
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=204.99 Aligned_cols=123 Identities=20% Similarity=0.254 Sum_probs=105.7
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|..+.+.+..|+ +++++||+|||++|.+|++..... |.++.|++||++||.|.++.+..+.+++
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5776 9999999999998886 999999999999999999654444 4579999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
|+++.+++|+.+..++.... .++|+++||+++ .+++..+ .+.++.+.++|+
T Consensus 125 GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aII 182 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAII 182 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEe
Confidence 99999999998876544333 589999999999 7888766 357788888885
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=204.13 Aligned_cols=124 Identities=17% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. .|+++|..+++.+..|+ ++.+.||+|||++|.+|++..... |.++.|++||++||.|.++.+..+.+++
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----GKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 477 49999999999999887 999999999999999999976665 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------ccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~~l~~lV~ 187 (333)
|+++.++.|+.+..++.+. ..+++|+++||+++ .+++.... ..++.+.++|+
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~Iv 205 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAII 205 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEE
Confidence 9999999999983333333 34699999999999 45554332 35677888874
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.9e-23 Score=194.99 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=189.7
Q ss_pred cCCCHHHHHH-HHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 42 FGLGFEVLKG-VLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 42 ~~l~~~l~~~-l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++.+..+++. +..+.|+ +|..|++++..|... .+-+++|..|||||++++++++..+.. |.++.+++
T Consensus 245 ~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----G~Q~ALMA 318 (677)
T COG1200 245 LPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----GYQAALMA 318 (677)
T ss_pred CCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----CCeeEEec
Confidence 4455555555 4678999 999999999999986 479999999999999999999999887 89999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH---HhhCC-CCEEEECchHHHHHHHhccccccCchhhHH---
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA---RLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK--- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--- 187 (333)
||.-||.|.++.+.++....|+++..++|....+...+ .+.+| .+|+||| +.+.+..+.++++.++|+
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEecc
Confidence 99999999999999999999999999999887655543 34455 9999999 777778899999999994
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh--cCCcEEE---eCCCc--eEEEEEecchhhh------------
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH--ASPDIVV---ATPGR--FLHIVVEMELKLS------------ 242 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~---~t~~~--i~~~~~~~~~k~~------------ 242 (333)
....+.......+..+++|||--+..-.+. .+-++.+ -.||| +.-.+...+....
T Consensus 394 HRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~ei~~G 473 (677)
T COG1200 394 HRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPHERRPEVYERIREEIAKG 473 (677)
T ss_pred ccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEeccccHHHHHHHHHHHHHcC
Confidence 222232222225788999999644333322 2222222 24554 3333333221111
Q ss_pred hHHHHhhcch--------hhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc---------CCc
Q psy18032 243 SIQLSLTDFK--------QDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD---------DTI 295 (333)
Q Consensus 243 ~l~lif~~~~--------~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd---------~~i 295 (333)
+-++++|+-. +.|+++++.|. ++++.++|| +.+.|++|++|+++|||||+ ..-
T Consensus 474 rQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnAT 553 (677)
T COG1200 474 RQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNAT 553 (677)
T ss_pred CEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCe
Confidence 1246666633 34555555554 778999999 34577999999999999998 122
Q ss_pred ccccc-------cccEE-EEccCCCchhhHHHh
Q psy18032 296 PLVLE-------GRDVV-AMARTGSGKTACFLF 320 (333)
Q Consensus 296 ~~vi~-------~~~~~-~~grtG~g~~~~~~l 320 (333)
-+||+ + -+| -.||.|.|-.-+|++
T Consensus 554 vMVIe~AERFGLa-QLHQLRGRVGRG~~qSyC~ 585 (677)
T COG1200 554 VMVIENAERFGLA-QLHQLRGRVGRGDLQSYCV 585 (677)
T ss_pred EEEEechhhhhHH-HHHHhccccCCCCcceEEE
Confidence 23444 3 233 689999776666665
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-22 Score=201.67 Aligned_cols=240 Identities=18% Similarity=0.182 Sum_probs=175.2
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.+++.+.+.++..|+.+..+.|+.++.. +.+++|+++++|||||||+.+.+.+++.+.+. +.++++++|+++||.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa~ 90 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALAE 90 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHHH
Confidence 3788888888889998888888888877 44569999999999999999999999999883 578999999999999
Q ss_pred HHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-----
Q psy18032 122 QTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT----- 196 (333)
Q Consensus 122 q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~----- 196 (333)
|.++.++++ ...|+++...+|+...... . ..+++|+|+|||++-.++++.......++++| +|+++-+.
T Consensus 91 Ek~~~~~~~-~~~GirV~~~TgD~~~~~~--~-l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvV--iDEiH~l~d~~RG 164 (766)
T COG1204 91 EKYEEFSRL-EELGIRVGISTGDYDLDDE--R-LARYDVIVTTPEKLDSLTRKRPSWIEEVDLVV--IDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHhhhH-HhcCCEEEEecCCcccchh--h-hccCCEEEEchHHhhHhhhcCcchhhcccEEE--EeeeeecCCcccC
Confidence 999999944 4579999999999875552 1 23689999999999999998888888999999 44433221
Q ss_pred -------------ccceeeeecCCChH--HHHHhhhcCCcEEE-eCCC-------ceEEEEEec-chh------------
Q psy18032 197 -------------KLQSTCLLGGDSMD--NQFARLHASPDIVV-ATPG-------RFLHIVVEM-ELK------------ 240 (333)
Q Consensus 197 -------------~~~~~~l~~sAT~~--~~v~~l~~~~~i~~-~t~~-------~i~~~~~~~-~~k------------ 240 (333)
....+.+..|||++ .++..+.+...+.. -.|. ....++... ..|
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~ 244 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALE 244 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHH
Confidence 12368999999997 46777754432211 1110 111122111 111
Q ss_pred -------hhhHHHHhhcchhhHHHHHHHhc---------------C-----CC------------------cccccc---
Q psy18032 241 -------LSSIQLSLTDFKQDTSRIALDLV---------------G-----DS------------------TEMIHK--- 272 (333)
Q Consensus 241 -------~~~l~lif~~~~~~~~~l~~~L~---------------g-----~~------------------~~~lh~--- 272 (333)
....+++||++++.+...|..+. . +. -..+|.
T Consensus 245 ~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL 324 (766)
T COG1204 245 LVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGL 324 (766)
T ss_pred HHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCC
Confidence 11125899999999888876553 0 00 013342
Q ss_pred ---chHHH-hhhCCCCcccccccc
Q psy18032 273 ---QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 273 ---~r~~l-~~f~~g~~~vLvaTd 292 (333)
+|+.+ +.|+.|+++|||||-
T Consensus 325 ~~~~R~~vE~~Fr~g~ikVlv~Tp 348 (766)
T COG1204 325 PREDRQLVEDAFRKGKIKVLVSTP 348 (766)
T ss_pred CHHHHHHHHHHHhcCCceEEEech
Confidence 45666 889999999999996
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=188.82 Aligned_cols=124 Identities=22% Similarity=0.268 Sum_probs=108.4
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
-+|+.+|.......+.+ |+|++.|||-|||+++++-+..++.+. +.++|+++||+.|+.|+.+.|++......-.
T Consensus 14 ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~----~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF----GGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc----CCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 35788888888777775 999999999999999999999999883 3389999999999999999999987766778
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++.++|..+.+++ ...+...+|+|+||.-+.+.+..+.++++++.++|+
T Consensus 89 i~~ltGev~p~~R-~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lif 137 (542)
T COG1111 89 IAALTGEVRPEER-EELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIF 137 (542)
T ss_pred eeeecCCCChHHH-HHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEe
Confidence 8889988887765 555666899999999999999999999999999994
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=193.49 Aligned_cols=125 Identities=21% Similarity=0.248 Sum_probs=97.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. .|+++|......+..| .+++++||+|||++|.+|++..... +..++|++|+++||.|..+.+..+.+++
T Consensus 67 lgl-rpydVQlig~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGM-FPYDVQVLGAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCC-CccHHHHHHHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 466 4777777777766665 7999999999999999998877665 5579999999999999999999999999
Q ss_pred CceEEEEECCcc---hHHHHHHhhCCCCEEEECchHH-HHHHHh------ccccccCchhhHH
Q psy18032 135 KLQSTCLLGGDS---MDNQFARLHASPDIVVATPGRF-LHIVVE------MELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~---~~~~~~~l~~~~~IlI~TP~rl-l~~l~~------~~~~~~~l~~lV~ 187 (333)
|+++.+++++.. .....+....+++|+++||+++ .+.+.. ....++.+.++|+
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IV 201 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIV 201 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEE
Confidence 999998887632 3333344446799999999999 454532 2345677888884
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.8e-22 Score=176.94 Aligned_cols=243 Identities=16% Similarity=0.164 Sum_probs=168.6
Q ss_pred cccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.=++++++.+..+.|++ +..++++|.|..+|.+.+.|+|++++.|||.||++||.+|++-. .+.+|+++|.
T Consensus 72 dkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~pl 143 (695)
T KOG0353|consen 72 DKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPL 143 (695)
T ss_pred ccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechh
Confidence 34678899999988886 58899999999999999999999999999999999999999864 4589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hhC---CCCEEEECchHHHH---HHHh--ccccccCchhh
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA---SPDIVVATPGRFLH---IVVE--MELKLSSIQYT 185 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~---~~~IlI~TP~rll~---~l~~--~~~~~~~l~~l 185 (333)
..|+.++.-+++.+ |+....+....+.++..+. +.+ ...+++.||+.+.. ++.+ +.+....++.+
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99999999999984 6666666655554443221 212 36899999998863 1211 11222222222
Q ss_pred HH------------HHHHHhhcc--c---cceeeeecCCChHHHHHhhhc------CCcEEEe--CCCceEEEEEecchh
Q psy18032 186 FK------------FVKELGKFT--K---LQSTCLLGGDSMDNQFARLHA------SPDIVVA--TPGRFLHIVVEMELK 240 (333)
Q Consensus 186 V~------------~i~~l~~~~--~---~~~~~l~~sAT~~~~v~~l~~------~~~i~~~--t~~~i~~~~~~~~~k 240 (333)
.+ |..++..+- . .....+..+||..+.+-.-.. ...-..+ ..+++.+.+.+....
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n 299 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGN 299 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCC
Confidence 21 455544321 1 244566777887655422211 1111111 234566666554221
Q ss_pred hh----hH------------HHHhhcchhhHHHHHHHhc--CCCcccccc-----chHHH-hhhCCCCcccccccc
Q psy18032 241 LS----SI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 241 ~~----~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~~l-~~f~~g~~~vLvaTd 292 (333)
.+ .+ .+|||-++++|+.++..|. |+.+..||+ ++... +.|-+|+++|+|||-
T Consensus 300 ~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv 375 (695)
T KOG0353|consen 300 EDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV 375 (695)
T ss_pred hHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEe
Confidence 11 11 4899999999999999996 999999998 34334 889999999999995
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=187.77 Aligned_cols=140 Identities=19% Similarity=0.245 Sum_probs=108.2
Q ss_pred CCcHHHHhHHHHHhcC---CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLEG---RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.+|+.|+++++.+.++ +++++.|+||||||.+|+.++...+.. +.++||++|+++|+.|+++.+++. .+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 4899999999999984 789999999999999999888777665 678999999999999999999874 36
Q ss_pred ceEEEEECCcchHHHHHHh----hCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhh-
Q psy18032 136 LQSTCLLGGDSMDNQFARL----HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGK- 194 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l----~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~- 194 (333)
.++..++|+.+..++.+.. .+.++|+|+||..+. ..+++++++|+ ...++..
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 7899999998766554332 335899999998764 34667777774 0112211
Q ss_pred -ccccceeeeecCCChHHHH
Q psy18032 195 -FTKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 195 -~~~~~~~~l~~sAT~~~~v 213 (333)
....+.+++++|||.+.+.
T Consensus 289 ra~~~~~~~il~SATps~~s 308 (679)
T PRK05580 289 RAKLENIPVVLGSATPSLES 308 (679)
T ss_pred HhhccCCCEEEEcCCCCHHH
Confidence 1234678999999987544
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-21 Score=188.23 Aligned_cols=141 Identities=16% Similarity=0.305 Sum_probs=125.6
Q ss_pred ccccCCCHHHHHHHH-----hCCCCCC---cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 39 FQSFGLGFEVLKGVL-----KRGYKIP---TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 39 f~~~~l~~~l~~~l~-----~~g~~~~---~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
-+.|++..++.+.+. .+||..| +|+|.++++.+..++|++++++||+|||++|++|++..+.. +..+
T Consensus 64 ~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v 138 (970)
T PRK12899 64 PEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPV 138 (970)
T ss_pred HHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCe
Confidence 366788999888887 6899999 99999999999999999999999999999999999988765 2348
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcccccc-------Cc
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEMELKLS-------SI 182 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~~~~~-------~l 182 (333)
+||+||++||.|..+.+..+.+++|+++.+++||.+..++.... +|+|+|+||+++ .++++.+.+.++ .+
T Consensus 139 ~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 139 HLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGF 216 (970)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccc
Confidence 99999999999999999999999999999999999988876554 599999999999 999998877666 44
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
+++|
T Consensus 217 ~~~I 220 (970)
T PRK12899 217 YFAI 220 (970)
T ss_pred cEEE
Confidence 7777
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=189.21 Aligned_cols=125 Identities=23% Similarity=0.295 Sum_probs=105.0
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.-.|+++|.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++.+....+.
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 345899999999998887 99999999999999999999988743 3568999999999999999999987654455
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++..+.|+.+..+ ...+..+++|+|+||+.+...+..+.+.+.++.++|+
T Consensus 88 ~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVv 137 (773)
T PRK13766 88 KIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIF 137 (773)
T ss_pred eEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEE
Confidence 7788888877654 4455567899999999999888878888888888884
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=184.42 Aligned_cols=264 Identities=20% Similarity=0.168 Sum_probs=193.6
Q ss_pred cCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 42 FGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 42 ~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++.+.+..+.+.+ ++|+ -|+-|..||..+.+. .|-++||..|.|||.+++=++...+.. |.|+.++|
T Consensus 577 f~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~-----GKQVAvLV 650 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD-----GKQVAVLV 650 (1139)
T ss_pred CCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC-----CCeEEEEc
Confidence 4566677777765 6888 599999999999874 599999999999999999999988887 78999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCchhhHHHHH
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVK 190 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~ 190 (333)
||.-||+|.++.|++-.+...+++..+..-.+.+++...+. + ..+||||| +-+-++.+.+++++++|+ |
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlII--D 723 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLII--D 723 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEE--e
Confidence 99999999999999877788899999888877777765543 3 49999999 666678899999999994 4
Q ss_pred HHhh----------ccccceeeeecCCChHHHHHhh-h---cCCcEEEeCCC--c--eEEEEEecchhhh----------
Q psy18032 191 ELGK----------FTKLQSTCLLGGDSMDNQFARL-H---ASPDIVVATPG--R--FLHIVVEMELKLS---------- 242 (333)
Q Consensus 191 ~l~~----------~~~~~~~~l~~sAT~~~~v~~l-~---~~~~i~~~t~~--~--i~~~~~~~~~k~~---------- 242 (333)
+-.+ -+..+.-++-.|||--+..-.+ + ++..++ .||+ | +.-++.+.+...-
T Consensus 724 EEqRFGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI-~TPP~~R~pV~T~V~~~d~~~ireAI~REl~R 802 (1139)
T COG1197 724 EEQRFGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVI-ATPPEDRLPVKTFVSEYDDLLIREAILRELLR 802 (1139)
T ss_pred chhhcCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhc-cCCCCCCcceEEEEecCChHHHHHHHHHHHhc
Confidence 3222 2345677888999954433222 2 223333 3443 3 3333433221111
Q ss_pred -hHHHHhhcchhhHHHHHHHhc----CCCccccccc------hHHHhhhCCCCcccccccc-----CCcccc----cc--
Q psy18032 243 -SIQLSLTDFKQDTSRIALDLV----GDSTEMIHKQ------RQSVRKWDPAKKKYVQVTD-----DTIPLV----LE-- 300 (333)
Q Consensus 243 -~l~lif~~~~~~~~~l~~~L~----g~~~~~lh~~------r~~l~~f~~g~~~vLvaTd-----~~i~~v----i~-- 300 (333)
..++...|..+..+.++..|+ ..+.+..||| ++.|.+|.+|+++|||||+ -|||.. |+
T Consensus 803 gGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 803 GGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred CCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 113556688899998888776 6688999993 3578999999999999998 344432 33
Q ss_pred -----cccEEEEccCCCchhhHHH
Q psy18032 301 -----GRDVVAMARTGSGKTACFL 319 (333)
Q Consensus 301 -----~~~~~~~grtG~g~~~~~~ 319 (333)
+.-||-.||.|.++-.||+
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYA 906 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYA 906 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEE
Confidence 5567778999954444443
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.9e-21 Score=183.16 Aligned_cols=146 Identities=19% Similarity=0.128 Sum_probs=114.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.++.+|.+.....+ |+|+|+++|||+|||+++...+++++.+.+ +.++|+++|++.|+.|+...+..++.. ..+
T Consensus 62 ~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~ 135 (746)
T KOG0354|consen 62 ELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQIACFSIYLIP--YSV 135 (746)
T ss_pred cccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHHHHHHhhccCc--ccc
Confidence 48999999999999 999999999999999999999999999853 468999999999999999777776543 556
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccc-ccCchhhHH--------------HHHHHhhccccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELK-LSSIQYTFK--------------FVKELGKFTKLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~-~~~l~~lV~--------------~i~~l~~~~~~~~~~l 203 (333)
....||......+..+...++|+|.||.-+.+.+..+..+ ++++.++|+ .++.+...-....|++
T Consensus 136 T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEE
Confidence 6666775554445567778999999999999988887654 488888884 1222222222334889
Q ss_pred ecCCChH
Q psy18032 204 LGGDSMD 210 (333)
Q Consensus 204 ~~sAT~~ 210 (333)
..+||..
T Consensus 216 gLTASpG 222 (746)
T KOG0354|consen 216 GLTASPG 222 (746)
T ss_pred EEecCCC
Confidence 9999875
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=171.02 Aligned_cols=236 Identities=17% Similarity=0.214 Sum_probs=158.8
Q ss_pred hCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
-++|++++.+|+.++|.+.+ ..|.|+|||||||||-.|+|.+++.+..+. .....++++|+|+++||.++++.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 45889999999999999777 579999999999999999999999988632 245789999999999999999999
Q ss_pred HHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--c-cccCchhhHH------------HHHHH
Q psy18032 128 KELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--L-KLSSIQYTFK------------FVKEL 192 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~-~~~~l~~lV~------------~i~~l 192 (333)
.+-....|++|..++|+....... -..++|||+|||.+--.-++.. . -++.++++++ .++.|
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEti 261 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETI 261 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHH
Confidence 986667799999999998654422 2358999999998753333322 1 2344555553 11111
Q ss_pred ----hhcc---ccceeeeecCCChHH--HHHhhhcC--C-cEEE--e--CCCceEEEEEecchh----------------
Q psy18032 193 ----GKFT---KLQSTCLLGGDSMDN--QFARLHAS--P-DIVV--A--TPGRFLHIVVEMELK---------------- 240 (333)
Q Consensus 193 ----~~~~---~~~~~~l~~sAT~~~--~v~~l~~~--~-~i~~--~--t~~~i~~~~~~~~~k---------------- 240 (333)
.+.. -.....+..|||+|+ .++.+.+- + .+.- . .|--+.+.+.-...|
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~k 341 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDK 341 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHH
Confidence 1111 134567889999985 45555421 1 1111 0 111222222111000
Q ss_pred ------hhhHHHHhhcchhhHHHHHHHhc------CCCcccccc------------------------chHHH-hhhCCC
Q psy18032 241 ------LSSIQLSLTDFKQDTSRIALDLV------GDSTEMIHK------------------------QRQSV-RKWDPA 283 (333)
Q Consensus 241 ------~~~l~lif~~~~~~~~~l~~~L~------g~~~~~lh~------------------------~r~~l-~~f~~g 283 (333)
.++.+++||+++.++.+.|+.|. |.....+|+ +|+.+ ..|..|
T Consensus 342 v~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G 421 (1230)
T KOG0952|consen 342 VVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG 421 (1230)
T ss_pred HHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC
Confidence 01125889999999888887763 333323322 45556 679999
Q ss_pred Ccccccccc
Q psy18032 284 KKKYVQVTD 292 (333)
Q Consensus 284 ~~~vLvaTd 292 (333)
.++||+||.
T Consensus 422 ~i~vL~cTa 430 (1230)
T KOG0952|consen 422 HIKVLCCTA 430 (1230)
T ss_pred CceEEEecc
Confidence 999999997
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=164.96 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=102.3
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |.++|.-.--.+..| -++.++||+|||++|.+|++..... |..++|++||++||.|.++++..+.+++
T Consensus 79 lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 4655 788888766666555 5999999999999999999987765 4569999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc-cccc-----cCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL-----SSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~-~~~~-----~~l~~lV~ 187 (333)
|+++.+++||.+..++.... .++|+|+||++| .+++..+ .+++ +.+.++|+
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~Iv 208 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIV 208 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEe
Confidence 99999999998877754443 689999999999 8888876 3344 57888884
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=167.97 Aligned_cols=251 Identities=16% Similarity=0.151 Sum_probs=151.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc--CC
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF--TK 135 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~ 135 (333)
..|+|+|+.+.........+++.||||+|||.++++.+...+.. ....+++|..||++.+++++++++++.+. .+
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~---~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ---GLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 36999999886554445679999999999999988776644333 12358999999999999999999875432 23
Q ss_pred ceEEEEECCcchHHHH---------------------HHhh---C---CCCEEEECchHHHHHH-HhccccccCch----
Q psy18032 136 LQSTCLLGGDSMDNQF---------------------ARLH---A---SPDIVVATPGRFLHIV-VEMELKLSSIQ---- 183 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~---------------------~~l~---~---~~~IlI~TP~rll~~l-~~~~~~~~~l~---- 183 (333)
..+.+.+|........ +-+. + -.+|+|||+.+++... ..+...++.+.
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 4566777665322110 0111 1 1689999999988433 22222222222
Q ss_pred hhHH------------HHHHHhhc-cccceeeeecCCChHHHHHh-hhc----C---------CcEE-----------Ee
Q psy18032 184 YTFK------------FVKELGKF-TKLQSTCLLGGDSMDNQFAR-LHA----S---------PDIV-----------VA 225 (333)
Q Consensus 184 ~lV~------------~i~~l~~~-~~~~~~~l~~sAT~~~~v~~-l~~----~---------~~i~-----------~~ 225 (333)
.+|+ .+..+.+. ......++++|||++....+ +.. . |-+. ..
T Consensus 442 vvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 442 VLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred eEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 2331 11111111 12356789999999876543 211 0 0000 00
Q ss_pred C-----CCceEEEEEe---c--c---hh---------hhhHHHHhhcchhhHHHHHHHhc--C---CCcccccc-----c
Q psy18032 226 T-----PGRFLHIVVE---M--E---LK---------LSSIQLSLTDFKQDTSRIALDLV--G---DSTEMIHK-----Q 273 (333)
Q Consensus 226 t-----~~~i~~~~~~---~--~---~k---------~~~l~lif~~~~~~~~~l~~~L~--g---~~~~~lh~-----~ 273 (333)
. +.+..-.+.. . . .- ....++|||||+++|+++++.|+ + .++..+|+ +
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0 0111000100 0 0 00 01125889999999999999986 2 46889998 2
Q ss_pred h-----HHHhhh-CCCC---cccccccc-------CCcccccc-----cccEEEEccCC
Q psy18032 274 R-----QSVRKW-DPAK---KKYVQVTD-------DTIPLVLE-----GRDVVAMARTG 311 (333)
Q Consensus 274 r-----~~l~~f-~~g~---~~vLvaTd-------~~i~~vi~-----~~~~~~~grtG 311 (333)
| +.++.| ++|+ ..|||||+ .+.+.++. ..++||+||+|
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~DvlItdlaPidsLiQRaGR~~ 660 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDFDWLITQLCPVDLLFQRLGRLH 660 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCCCeEEECCCCHHHHHHHHhccC
Confidence 3 235788 7776 47999997 34444443 44899999999
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-17 Score=170.79 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=143.1
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHH-HhhhhcccCCceEEEEcc----cHHHHHHHHHHHHH-HhccCCc
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE-KLKTHAATSGVRALILSP----TRELALQTFKFVKE-LGKFTKL 136 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~-~l~~~~~~~~~~~lil~P----t~~L~~q~~~~~~~-~~~~~~~ 136 (333)
.-.+.++.+..++.++++|+||||||. ++|.+- .... .. ....++.-| +++||.++.+.+.. ++...|.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~-~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GV-KGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CC-CCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 344555566666678899999999998 677432 2211 11 112222335 57888888888874 4444443
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HHH-HHhhcccc--ceee
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FVK-ELGKFTKL--QSTC 202 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i~-~l~~~~~~--~~~~ 202 (333)
++ . .+++ ..++++|+|+||++|++.+.... .+++++++|+ |+. .+.++++. ..|+
T Consensus 153 ~v----r---f~~~---~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 153 KV----R---FNDQ---VSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred ee----c---Cccc---cCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 32 1 1111 13468999999999999887654 4888999985 111 23334442 4799
Q ss_pred eecCCChHHH-HHh-hhcCCcEEEeCC-CceEEEEEecch--------hhh--------------hHHHHhhcchhhHHH
Q psy18032 203 LLGGDSMDNQ-FAR-LHASPDIVVATP-GRFLHIVVEMEL--------KLS--------------SIQLSLTDFKQDTSR 257 (333)
Q Consensus 203 l~~sAT~~~~-v~~-l~~~~~i~~~t~-~~i~~~~~~~~~--------k~~--------------~l~lif~~~~~~~~~ 257 (333)
+++|||++.+ ..+ +.+.|.+.+... ..+..++..... ... .-.+||++++.+++.
T Consensus 222 ILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~ 301 (1294)
T PRK11131 222 IITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRD 301 (1294)
T ss_pred EEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHH
Confidence 9999999642 222 223443333211 113333332110 011 114899999999999
Q ss_pred HHHHhc--CCC---cccccc---chHHHhhhC-CCCcccccccc--------CCcccccc--------------------
Q psy18032 258 IALDLV--GDS---TEMIHK---QRQSVRKWD-PAKKKYVQVTD--------DTIPLVLE-------------------- 300 (333)
Q Consensus 258 l~~~L~--g~~---~~~lh~---~r~~l~~f~-~g~~~vLvaTd--------~~i~~vi~-------------------- 300 (333)
+++.|. +++ +..+|| +.++..-|. .|+.+|+|||| ++|..||+
T Consensus 302 lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~ 381 (1294)
T PRK11131 302 TADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPI 381 (1294)
T ss_pred HHHHHHhcCCCcceEeecccCCCHHHHHHHhcccCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCe
Confidence 999996 443 457888 222223332 57899999999 56667776
Q ss_pred -----cccEEEEccCC
Q psy18032 301 -----GRDVVAMARTG 311 (333)
Q Consensus 301 -----~~~~~~~grtG 311 (333)
+.|.||+||+|
T Consensus 382 ~~iSkasa~QRaGRAG 397 (1294)
T PRK11131 382 EPISQASANQRKGRCG 397 (1294)
T ss_pred eecCHhhHhhhccccC
Confidence 35899999999
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-17 Score=160.71 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=102.6
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|.-..=.+..|+ ++.++||+|||+++.+|++-.... |..+-|++||..||.|.++.+..+.+++
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT-----GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc-----CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 4766 8999998887777764 999999999999999999643333 3357799999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------ccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~~l~~lV~ 187 (333)
|+++.++.|+.+..++.... .++|+++||+++ .++++.+. ...+.+.++|+
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIv 207 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIV 207 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEE
Confidence 99999999999888766554 489999999999 78887654 34677777774
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=157.66 Aligned_cols=121 Identities=21% Similarity=0.290 Sum_probs=86.5
Q ss_pred EEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---h
Q psy18032 78 VAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L 154 (333)
Q Consensus 78 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l 154 (333)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++. .+..+..++|+.+..++.+. +
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~-----g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL-----GKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHHHHH
Confidence 478999999999998776555544 678999999999999999999874 35678888988876554333 2
Q ss_pred h-CCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhhc--cccceeeeecCCChHHHH
Q psy18032 155 H-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGKF--TKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 155 ~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~~--~~~~~~~l~~sAT~~~~v 213 (333)
. ..++|+|||+..+. ..+++++++|+ ...++..+ ...+.+++++|||-+.+.
T Consensus 73 ~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles 143 (505)
T TIGR00595 73 KNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLES 143 (505)
T ss_pred HcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHH
Confidence 2 35899999998663 34667777774 01111111 124678999999976443
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-17 Score=159.39 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=124.8
Q ss_pred HhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
...+|+ |..+|++||-++..|.+|+|.|+|.+|||+++-.++...-. ++.+++|-+|.++|.+|-++.|++-..
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~-----h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK-----HMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh-----hccceEecchhhhhccchHHHHHHhcc
Confidence 456777 89999999999999999999999999999998887765533 377999999999999999999998433
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhccccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKLQ 199 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~~ 199 (333)
. +.+++|+..... .+.+||.|.|-|..++-++.--.+++.++|+ ..+++.-++|..
T Consensus 366 D----vgLlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 D----VGLLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred c----cceeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeecccc
Confidence 3 237788876554 5789999999999999988766777777775 444555678999
Q ss_pred eeeeecCCChHHH--HHh----hhcCCcEEEeCCC
Q psy18032 200 STCLLGGDSMDNQ--FAR----LHASPDIVVATPG 228 (333)
Q Consensus 200 ~~~l~~sAT~~~~--v~~----l~~~~~i~~~t~~ 228 (333)
.+.++.|||+++- .+. ..+....++.|+.
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~k 469 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSK 469 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEecCC
Confidence 9999999999743 333 3344445555543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.1e-17 Score=162.25 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=124.9
Q ss_pred HHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
......||+ |.++|++++-.+..|.+|+++||||||||++.-+++...+.. +.++++.+|.++|.+|.++.+..
T Consensus 111 ~~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 111 PPAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred cHHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHH
Confidence 345678998 999999999999999999999999999999999998888776 55799999999999999999987
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhcc
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFT 196 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~ 196 (333)
......-.+.+.+|+.+.+. .+.|+|.|-|-|.+++..+...+.++.++|+ ..++..-++
T Consensus 185 ~fgdv~~~vGL~TGDv~IN~-------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 185 KFGDVADMVGLMTGDVSINP-------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred HhhhhhhhccceecceeeCC-------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhc
Confidence 32221234577788887765 6889999999999999999888888888885 455566677
Q ss_pred ccceeeeecCCChH
Q psy18032 197 KLQSTCLLGGDSMD 210 (333)
Q Consensus 197 ~~~~~~l~~sAT~~ 210 (333)
|...+.+++|||++
T Consensus 258 P~~v~~v~LSATv~ 271 (1041)
T COG4581 258 PDHVRFVFLSATVP 271 (1041)
T ss_pred CCCCcEEEEeCCCC
Confidence 88899999999996
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-17 Score=155.35 Aligned_cols=154 Identities=18% Similarity=0.221 Sum_probs=124.5
Q ss_pred HhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+.+.|. +.|+|..+|..+-++++|+|.|.|.+|||.++-+++...+.. +-++|+-+|-++|.+|-|+.+..-.+
T Consensus 124 k~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~ 197 (1041)
T KOG0948|consen 124 KTYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK 197 (1041)
T ss_pred cCCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc
Confidence 344555 899999999999999999999999999999999999988877 55899999999999999999987333
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh---------------hccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG---------------KFTK 197 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~---------------~~~~ 197 (333)
.|.+.+|+.+.+. .+.+||.|.|-|..++-++.--++.+.++|+ |+++ -++|
T Consensus 198 ----DVGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIF--DEIHYMRDkERGVVWEETIIllP 264 (1041)
T KOG0948|consen 198 ----DVGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIF--DEIHYMRDKERGVVWEETIILLP 264 (1041)
T ss_pred ----ccceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEe--eeehhccccccceeeeeeEEecc
Confidence 2567788887766 5789999999999999998888888888883 4333 2457
Q ss_pred cceeeeecCCChHHH------HHhhhcCCcEEEe
Q psy18032 198 LQSTCLLGGDSMDNQ------FARLHASPDIVVA 225 (333)
Q Consensus 198 ~~~~~l~~sAT~~~~------v~~l~~~~~i~~~ 225 (333)
.+...++.|||+++. +..+...|..++-
T Consensus 265 ~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVY 298 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNARQFAEWICHIHKQPCHVVY 298 (1041)
T ss_pred ccceEEEEeccCCCHHHHHHHHHHHhcCCceEEe
Confidence 788899999999843 3334455644443
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-15 Score=146.55 Aligned_cols=247 Identities=18% Similarity=0.230 Sum_probs=155.3
Q ss_pred HHHHHHhC-CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVLKR-GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+.+.+++. || .|+..|.-....+..|++.-+.||||.|||.--++..+ .+.. +|.++++|+||+.|+.|.++.
T Consensus 71 ~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl-~~a~----kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 71 FEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSL-YLAK----KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHH-HHHh----cCCeEEEEecCHHHHHHHHHH
Confidence 34445554 66 59999999999999999999999999999964443333 3232 367999999999999999999
Q ss_pred HHHHhccCC-ceEEE-EECCcchHHH---HHHhhC-CCCEEEECchHHHHHHHh---ccc---cccCchhhHH---HHHH
Q psy18032 127 VKELGKFTK-LQSTC-LLGGDSMDNQ---FARLHA-SPDIVVATPGRFLHIVVE---MEL---KLSSIQYTFK---FVKE 191 (333)
Q Consensus 127 ~~~~~~~~~-~~~~~-~~g~~~~~~~---~~~l~~-~~~IlI~TP~rll~~l~~---~~~---~~~~l~~lV~---~i~~ 191 (333)
+..++...+ ..+.. .++..+.++. .+.+.+ +.+|+|+|..-|...... ..+ ..+++.-+.- .+|.
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHH
Confidence 999987666 44444 3444444332 344444 599999998777644432 111 1222222111 0000
Q ss_pred Hhhcc--------------------------------------------ccceeeeecCCChHHHH---HhhhcCCcEEE
Q psy18032 192 LGKFT--------------------------------------------KLQSTCLLGGDSMDNQF---ARLHASPDIVV 224 (333)
Q Consensus 192 l~~~~--------------------------------------------~~~~~~l~~sAT~~~~v---~~l~~~~~i~~ 224 (333)
+..++ ....+.+..|||..+.= .-+..-....+
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev 304 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV 304 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc
Confidence 00000 01234455555543210 00000011111
Q ss_pred e----CCCceEEEEEecchhhh--hH-------HHHhhcc---hhhHHHHHHHhc--CCCcccccc-chHHHhhhCCCCc
Q psy18032 225 A----TPGRFLHIVVEMELKLS--SI-------QLSLTDF---KQDTSRIALDLV--GDSTEMIHK-QRQSVRKWDPAKK 285 (333)
Q Consensus 225 ~----t~~~i~~~~~~~~~k~~--~l-------~lif~~~---~~~~~~l~~~L~--g~~~~~lh~-~r~~l~~f~~g~~ 285 (333)
+ ...|+.+.+...+...+ .+ .+||+.. ++.+++++++|+ |+++..+|+ .++.++.|..|++
T Consensus 305 G~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~Gei 384 (1187)
T COG1110 305 GSGGEGLRNIVDIYVESESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEV 384 (1187)
T ss_pred CccchhhhheeeeeccCccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccchhhhhhhccCce
Confidence 1 12367777765532221 11 4889998 899999999997 999999998 5778899999999
Q ss_pred ccccccc---------CCcccccc
Q psy18032 286 KYVQVTD---------DTIPLVLE 300 (333)
Q Consensus 286 ~vLvaTd---------~~i~~vi~ 300 (333)
++||... -|+|+.+-
T Consensus 385 dvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 385 DVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred eEEEEecccccceeecCCchhhee
Confidence 9999775 56676664
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.7e-15 Score=149.46 Aligned_cols=250 Identities=14% Similarity=0.130 Sum_probs=149.8
Q ss_pred CCcHHHHhHHHHHhc-C--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLE-G--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~-g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.++|+|.+++..+.. | +..++++|||+|||+..+..+... +.++|||||+.+|+.|..+.+.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 389999999999774 4 478999999999999888665432 23699999999999999999998765445
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh--------ccccccCchhhHH------HHHHHhhccc--cc
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE--------MELKLSSIQYTFK------FVKELGKFTK--LQ 199 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~--------~~~~~~~l~~lV~------~i~~l~~~~~--~~ 199 (333)
..+..++|+.... ......|+|+|...+.....+ ..+.-....++|+ -...+.+++. ..
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~~fr~il~~l~a 401 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAAMFRRVLTIVQA 401 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHHHHHHHHHhcCc
Confidence 5566666654321 122367999999766422111 0111123334442 0111111111 12
Q ss_pred eeeeecCCChHHH---HHhh--hcCCcEEEeC------CCceEE-----EEE-----------------------ecchh
Q psy18032 200 STCLLGGDSMDNQ---FARL--HASPDIVVAT------PGRFLH-----IVV-----------------------EMELK 240 (333)
Q Consensus 200 ~~~l~~sAT~~~~---v~~l--~~~~~i~~~t------~~~i~~-----~~~-----------------------~~~~k 240 (333)
...+.+|||...+ ...+ .-+|.+...+ .|-+.. ..+ ....|
T Consensus 402 ~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K 481 (732)
T TIGR00603 402 HCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNK 481 (732)
T ss_pred CcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHH
Confidence 3457788887421 1111 1122222110 111100 000 00111
Q ss_pred hhh-------------HHHHhhcchhhHHHHHHHhcCCCcccccc-----ch-HHHhhhCCC-Ccccccccc--------
Q psy18032 241 LSS-------------IQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QR-QSVRKWDPA-KKKYVQVTD-------- 292 (333)
Q Consensus 241 ~~~-------------l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r-~~l~~f~~g-~~~vLvaTd-------- 292 (333)
... -.+|||++.+.++.++..|. +..+|| +| +.+++|++| ++++||+|+
T Consensus 482 ~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~---~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDl 558 (732)
T TIGR00603 482 FRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG---KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDL 558 (732)
T ss_pred HHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC---CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCC
Confidence 111 14789999999999998773 456787 34 456999865 889999997
Q ss_pred CCcccccc--------cccEEEEccCC---Cchh----hHHHhhhhh
Q psy18032 293 DTIPLVLE--------GRDVVAMARTG---SGKT----ACFLFYFFF 324 (333)
Q Consensus 293 ~~i~~vi~--------~~~~~~~grtG---~g~~----~~~~lp~~~ 324 (333)
++...+|. ..|+||+||++ .|+. .||+..++.
T Consensus 559 P~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs 605 (732)
T TIGR00603 559 PEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVS 605 (732)
T ss_pred CCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEec
Confidence 55566664 45789999998 3444 466666654
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=121.49 Aligned_cols=159 Identities=38% Similarity=0.509 Sum_probs=119.7
Q ss_pred hCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..++..|++.|.++++.+..+ +++++++|||+|||.++..+++..+.... ...+++++|+.+++.|..+.+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK---GKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC---CCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 456788999999999999999 99999999999999999999999887632 35799999999999999999998766
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCC-CEEEECchHHHHHHHhccccccCchhhHH-HH---------HHH---hhcccc
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASP-DIVVATPGRFLHIVVEMELKLSSIQYTFK-FV---------KEL---GKFTKL 198 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~-~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i---------~~l---~~~~~~ 198 (333)
..........++....+....+.++. +++++||+.+.+...........+.++|+ .. +.+ ....+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~ 159 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK 159 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc
Confidence 55444555566665455555555555 99999999999998887655666666663 11 111 122234
Q ss_pred ceeeeecCCChHHHHHh
Q psy18032 199 QSTCLLGGDSMDNQFAR 215 (333)
Q Consensus 199 ~~~~l~~sAT~~~~v~~ 215 (333)
....+++|||.++....
T Consensus 160 ~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 160 NVQLLLLSATPPEEIEN 176 (201)
T ss_pred cceEEEEecCCchhHHH
Confidence 67778888888654443
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.5e-15 Score=146.48 Aligned_cols=165 Identities=18% Similarity=0.201 Sum_probs=119.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcc------cCCceEEEEccc
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAA------TSGVRALILSPT 116 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~~~~~~lil~Pt 116 (333)
++++-..++ .|+..+.++|.....+.+.+ .|+++|||||+|||-.+++.+++.+..+.. -...+.++++|.
T Consensus 296 lP~Wnq~aF--~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAF--FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhc--ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 444444444 36677999999999998887 579999999999999999999999887543 224589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cc-cccCchhhHHHHHHHh-
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-EL-KLSSIQYTFKFVKELG- 193 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~-~~~~l~~lV~~i~~l~- 193 (333)
.+|++++...+.+-....|++|.-.+|+.....+. ..+.+|+|+|||..--.-+++ .. ...-++.++ +|+++
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlI--IDEIHL 448 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLI--IDEIHL 448 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHh--hhhhhh
Confidence 99999999999987788999999999987643321 125789999999864333331 11 122345555 33331
Q ss_pred ------------------hc--cccceeeeecCCChHH--HHHh
Q psy18032 194 ------------------KF--TKLQSTCLLGGDSMDN--QFAR 215 (333)
Q Consensus 194 ------------------~~--~~~~~~~l~~sAT~~~--~v~~ 215 (333)
+. -...+..+..|||+++ .+..
T Consensus 449 LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~ 492 (1674)
T KOG0951|consen 449 LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVAS 492 (1674)
T ss_pred cccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHH
Confidence 00 0125667889999985 4444
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.2e-14 Score=139.93 Aligned_cols=123 Identities=18% Similarity=0.167 Sum_probs=98.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |+++|.-.--.+.. .-++.++||.|||++|.+|++..... |..+.|++|+.+||.+..+++..+..++
T Consensus 79 lgm~-~ydVQliGgl~L~~--G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEMR-HFDVQLLGGMVLDS--NRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCCC-cCchHHhcchHhcC--CccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 4665 78888765544544 46999999999999999999988776 4559999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc-cccc-----cCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM-ELKL-----SSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~-~~~~-----~~l~~lV~ 187 (333)
|+++.++.++.+..+.. -.-+++|+++||+++ .+++..+ .+.. +.+.++|+
T Consensus 151 Glsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIv 208 (908)
T PRK13107 151 GLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALI 208 (908)
T ss_pred CCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeee
Confidence 99999999988764422 222689999999999 7888776 3333 66666663
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=142.13 Aligned_cols=105 Identities=24% Similarity=0.226 Sum_probs=91.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+. |+++|.-.-=.+..|+ ++.+.||+|||+++.+|++..... |.++-+++||..||.+-++.+..+.+.+
T Consensus 77 ~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 4666 8999998887777776 999999999999999999988777 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.++.|+.+..+..... .++|+++|...+-
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~g 181 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELG 181 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCcccc
Confidence 99999999887776654333 5899999997664
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.4e-14 Score=126.29 Aligned_cols=233 Identities=20% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCC-CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYK-IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~-~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+|+ ++++.|..+-..++ +.+|.++.|-||+|||....-.+-..+.. |.++.+.+|....+.+++.+++.
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-----G~~vciASPRvDVclEl~~Rlk~- 166 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-----GGRVCIASPRVDVCLELYPRLKQ- 166 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc-----CCeEEEecCcccchHHHHHHHHH-
Confidence 443 58999988766544 46899999999999998655555555444 88999999999999999999998
Q ss_pred hccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc---------------
Q psy18032 131 GKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF--------------- 195 (333)
Q Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~--------------- 195 (333)
.+.+..+.+++|+.+..- ..+++|+|-.+|+..-..-+ +++ +|+++++
T Consensus 167 -aF~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~aFD-------~li--IDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 167 -AFSNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQAFD-------LLI--IDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred -hhccCCeeeEecCCchhc-------cccEEEEehHHHHHHHhhcc-------EEE--EeccccccccCCHHHHHHHHHh
Confidence 445788889998876544 36799999999987765433 222 3333332
Q ss_pred cccceeeeecCCChHHHHHhhhcCCcEE-EeCCCc-------eEEEEE---------------------ecchhhhhHHH
Q psy18032 196 TKLQSTCLLGGDSMDNQFARLHASPDIV-VATPGR-------FLHIVV---------------------EMELKLSSIQL 246 (333)
Q Consensus 196 ~~~~~~~l~~sAT~~~~v~~l~~~~~i~-~~t~~~-------i~~~~~---------------------~~~~k~~~l~l 246 (333)
.......++.+||-++...+-...-.+. +--|.| +-.++- +...+.....+
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~l 309 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVL 309 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEE
Confidence 2235667899999987775543222221 111111 000010 00112223368
Q ss_pred HhhcchhhHHHHHHHhc-CC---Ccccccc----chHHHhhhCCCCcccccccc--------CCccccc-c--------c
Q psy18032 247 SLTDFKQDTSRIALDLV-GD---STEMIHK----QRQSVRKWDPAKKKYVQVTD--------DTIPLVL-E--------G 301 (333)
Q Consensus 247 if~~~~~~~~~l~~~L~-g~---~~~~lh~----~r~~l~~f~~g~~~vLvaTd--------~~i~~vi-~--------~ 301 (333)
+|+++.+.++.++..|. ++ ..+..|+ +.+.+++|++|++.+|++|+ ++++..+ + +
T Consensus 310 iF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 310 IFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred EEecchHHHHHHHHHHHhhCCccceeeeeccCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 99999999999998884 44 3357787 55788999999999999998 4444333 2 3
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.-+|-.||+|
T Consensus 390 aLVQIaGRvG 399 (441)
T COG4098 390 ALVQIAGRVG 399 (441)
T ss_pred HHHHHhhhcc
Confidence 3566677777
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=143.95 Aligned_cols=244 Identities=18% Similarity=0.155 Sum_probs=146.8
Q ss_pred CCCCCCcHHHH---hHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 55 RGYKIPTPIQR---KTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 55 ~g~~~~~~~Q~---~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..|...-|+.. +.+..+.+.+.++++|+||||||. ++|.+..-.. .....+.++.-|.|--|..+.+.+...
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~--~~~~~~I~~tQPRRlAA~svA~RvA~e- 134 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELG--RGSHGLIGHTQPRRLAARTVAQRIAEE- 134 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcC--CCCCceEecCCccHHHHHHHHHHHHHH-
Confidence 45665566655 455556566778999999999998 4564432111 111234555668888788777666542
Q ss_pred ccCCceEEEEECC-cchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HHHH-Hhhccc-
Q psy18032 132 KFTKLQSTCLLGG-DSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FVKE-LGKFTK- 197 (333)
Q Consensus 132 ~~~~~~~~~~~g~-~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i~~-l~~~~~- 197 (333)
.|..+...+|. ...+.+ ...+.+|.++||++|+..+.... .++++.++|+ ++-. +.+++.
T Consensus 135 --lg~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~ 208 (1283)
T TIGR01967 135 --LGTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPR 208 (1283)
T ss_pred --hCCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhh
Confidence 33444444442 222221 12368899999999998886643 4788888885 1111 222222
Q ss_pred -cceeeeecCCChHH-HHHhhh-cCCcEEEeCCCc---eEEEEEecc--------hhhh--------------hHHHHhh
Q psy18032 198 -LQSTCLLGGDSMDN-QFARLH-ASPDIVVATPGR---FLHIVVEME--------LKLS--------------SIQLSLT 249 (333)
Q Consensus 198 -~~~~~l~~sAT~~~-~v~~l~-~~~~i~~~t~~~---i~~~~~~~~--------~k~~--------------~l~lif~ 249 (333)
...+++++|||+.. .+.+.. +.|.+.+ +|+ +..+|.... .... .-.+||+
T Consensus 209 rpdLKlIlmSATld~~~fa~~F~~apvI~V--~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFL 286 (1283)
T TIGR01967 209 RPDLKIIITSATIDPERFSRHFNNAPIIEV--SGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFL 286 (1283)
T ss_pred CCCCeEEEEeCCcCHHHHHHHhcCCCEEEE--CCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeC
Confidence 25689999999963 233332 3343333 232 222332110 0101 1148999
Q ss_pred cchhhHHHHHHHhc--C---CCcccccc---chHHHhhhCCC-Ccccccccc--------CCcccccc------------
Q psy18032 250 DFKQDTSRIALDLV--G---DSTEMIHK---QRQSVRKWDPA-KKKYVQVTD--------DTIPLVLE------------ 300 (333)
Q Consensus 250 ~~~~~~~~l~~~L~--g---~~~~~lh~---~r~~l~~f~~g-~~~vLvaTd--------~~i~~vi~------------ 300 (333)
+++++++.+++.|. + ..+..+|| ..+..+.|+.+ ..+|++||| ++|..||+
T Consensus 287 pg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~ 366 (1283)
T TIGR01967 287 PGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYR 366 (1283)
T ss_pred CCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCCCceEEEeccHHHhccccCCeeEEEeCCCccccccccc
Confidence 99999999999886 2 34667898 22333446544 469999998 56666775
Q ss_pred -------------cccEEEEccCC
Q psy18032 301 -------------GRDVVAMARTG 311 (333)
Q Consensus 301 -------------~~~~~~~grtG 311 (333)
+.+.||.||+|
T Consensus 367 ~~~~~L~~~~ISkasa~QRaGRAG 390 (1283)
T TIGR01967 367 TKVQRLPIEPISQASANQRKGRCG 390 (1283)
T ss_pred cCccccCCccCCHHHHHHHhhhhC
Confidence 25789999999
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.5e-13 Score=136.89 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=72.8
Q ss_pred CCcHHHHhHHHHHhc----C-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLE----G-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++++|.+++..+.+ | +..+++++||||||.+++. ++.++... ....++|+|+|+.+|+.|..+.|..+.-.
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~ 489 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKIE 489 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc--CccCeEEEEecHHHHHHHHHHHHHhcccc
Confidence 489999999988763 3 5799999999999987443 44444432 22458999999999999999999986322
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l 172 (333)
.+.....+++.....+. ......+|+|+|...+...+
T Consensus 490 ~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~ 526 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRI 526 (1123)
T ss_pred cccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhh
Confidence 22111112221111111 11235789999999887654
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.5e-12 Score=120.97 Aligned_cols=234 Identities=18% Similarity=0.186 Sum_probs=138.8
Q ss_pred CCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+++|++++..+.+ ++..++++|||+|||.+++-.+... +..+|||+|+.+|+.|..+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 389999999999999 8899999999999999887766554 2349999999999999987777643221
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccc----------ccee-ee
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTK----------LQST-CL 203 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~----------~~~~-~l 203 (333)
..+. .+|+...+.. ...|.|+|-..+...........++..++| +|+.++... .... .+
T Consensus 108 -~~~g-~~~~~~~~~~------~~~i~vat~qtl~~~~~l~~~~~~~~~liI--~DE~Hh~~a~~~~~~~~~~~~~~~~L 177 (442)
T COG1061 108 -DEIG-IYGGGEKELE------PAKVTVATVQTLARRQLLDEFLGNEFGLII--FDEVHHLPAPSYRRILELLSAAYPRL 177 (442)
T ss_pred -cccc-eecCceeccC------CCcEEEEEhHHHhhhhhhhhhcccccCEEE--EEccccCCcHHHHHHHHhhhccccee
Confidence 1222 3333333221 136999997766543211122233455555 333332221 1112 68
Q ss_pred ecCCChHH----HHHhhh--cCCcEEEeCC------C-----ceEEEEE-------------------------------
Q psy18032 204 LGGDSMDN----QFARLH--ASPDIVVATP------G-----RFLHIVV------------------------------- 235 (333)
Q Consensus 204 ~~sAT~~~----~v~~l~--~~~~i~~~t~------~-----~i~~~~~------------------------------- 235 (333)
.+|||... .+..+. .++.+...+. + .+.....
T Consensus 178 GLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (442)
T COG1061 178 GLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAEN 257 (442)
T ss_pred eeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHH
Confidence 89999541 111111 1111111100 1 0000000
Q ss_pred -------ecchhhh------------hHHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccc
Q psy18032 236 -------EMELKLS------------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYV 288 (333)
Q Consensus 236 -------~~~~k~~------------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vL 288 (333)
..+.+.. .-.++|+..+..++.++..+. |. +..+.+ .| +.+++|+.|++++|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~~~~l 336 (442)
T COG1061 258 EARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGGIKVL 336 (442)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 0000000 013678889999999998886 55 666665 34 45699999999999
Q ss_pred cccc--------CCcccccc-------cccEEEEccCC
Q psy18032 289 QVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 289 vaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
|++. +++..++- ..|+||+||.=
T Consensus 337 v~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~L 374 (442)
T COG1061 337 VTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGL 374 (442)
T ss_pred EEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhc
Confidence 9986 44444442 55788888754
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-11 Score=95.79 Aligned_cols=108 Identities=42% Similarity=0.575 Sum_probs=86.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+++++.+|||+|||..+...+...... .+..+++|++|+..++.|..+.+...... +..+..+.++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 478999999999999999888887665 13468999999999999999999987655 67788888777666655555
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
..+.+|+++|++.+...............++|
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~ii 108 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLI 108 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEE
Confidence 66799999999999887776554455566666
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=124.30 Aligned_cols=251 Identities=18% Similarity=0.191 Sum_probs=148.7
Q ss_pred CcHHHHhHHHHHhcC---C-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 60 PTPIQRKTIPLVLEG---R-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g---~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+.+.|..++..+++. . .+++.||||.|||.+.+.++...+... .....+.+++.|++.+++++++.++......+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 488999999998875 3 688999999999999999999887774 22467999999999999999999998765544
Q ss_pred ceEEEEECCcchHHHHHH---------h-----hCCCCEEEECchHHHHHHHhcc-cc-ccC--chhhHH----------
Q psy18032 136 LQSTCLLGGDSMDNQFAR---------L-----HASPDIVVATPGRFLHIVVEME-LK-LSS--IQYTFK---------- 187 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~---------l-----~~~~~IlI~TP~rll~~l~~~~-~~-~~~--l~~lV~---------- 187 (333)
+.....+|.....-.... + .....+.++||-+......... .. +.. ...+|+
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 433322333221111000 0 0124566677766654221111 00 111 111111
Q ss_pred ----HHHHHhhccccceeeeecCCChHHHHHhhh-----cCCcEEEe--------CCC-------ceEEE----EE---e
Q psy18032 188 ----FVKELGKFTKLQSTCLLGGDSMDNQFARLH-----ASPDIVVA--------TPG-------RFLHI----VV---E 236 (333)
Q Consensus 188 ----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-----~~~~i~~~--------t~~-------~i~~~----~~---~ 236 (333)
...-+.........++++|||+|+...+.. +...+... -+. .+... .. .
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 434 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELIS 434 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcch
Confidence 011111112246788999999998765542 11111111 000 11111 00 0
Q ss_pred cchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-----chH----HHhhh-CCCCcccccccc-------CCccc
Q psy18032 237 MELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QRQ----SVRKW-DPAKKKYVQVTD-------DTIPL 297 (333)
Q Consensus 237 ~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r~----~l~~f-~~g~~~vLvaTd-------~~i~~ 297 (333)
...+...-+++.|||++.|.++++.|+ +.++..+|+ .|+ .+..+ ..+...|+|||- -+.+.
T Consensus 435 ~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~ 514 (733)
T COG1203 435 EEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDV 514 (733)
T ss_pred hhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCe
Confidence 011112225889999999999999998 335899998 232 23333 778999999994 44454
Q ss_pred ccc-----cccEEEEccCC
Q psy18032 298 VLE-----GRDVVAMARTG 311 (333)
Q Consensus 298 vi~-----~~~~~~~grtG 311 (333)
+|. ..-+||.||.+
T Consensus 515 mITe~aPidSLIQR~GRv~ 533 (733)
T COG1203 515 LITELAPIDSLIQRAGRVN 533 (733)
T ss_pred eeecCCCHHHHHHHHHHHh
Confidence 543 33678888777
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.2e-10 Score=110.21 Aligned_cols=140 Identities=19% Similarity=0.265 Sum_probs=106.0
Q ss_pred CCCcHHHHhHHHHHhcC----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 58 KIPTPIQRKTIPLVLEG----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
..+++-|+.++..+.+. .-.++.+.||||||.+|+-.+-..+.. |.++|+|+|-.+|-.|+.+.|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~r--- 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ-----GKQVLVLVPEIALTPQLLARFKAR--- 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc-----CCEEEEEeccccchHHHHHHHHHH---
Confidence 35688999999998776 569999999999999999888877776 789999999999999999999974
Q ss_pred CCceEEEEECCcchHHHH----HHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHh
Q psy18032 134 TKLQSTCLLGGDSMDNQF----ARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELG 193 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~----~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~ 193 (333)
.|.+++.++++.+..+.. +.......|+|||-.-+. .-+++++++|+ ...|+.
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA 341 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVA 341 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHHH
Confidence 457888888887655543 333446999999953322 34777888885 233333
Q ss_pred hcc--ccceeeeecCCChHHH
Q psy18032 194 KFT--KLQSTCLLGGDSMDNQ 212 (333)
Q Consensus 194 ~~~--~~~~~~l~~sAT~~~~ 212 (333)
-.. ..+.+++++|||-+-+
T Consensus 342 ~~Ra~~~~~pvvLgSATPSLE 362 (730)
T COG1198 342 VLRAKKENAPVVLGSATPSLE 362 (730)
T ss_pred HHHHHHhCCCEEEecCCCCHH
Confidence 222 2467889999997633
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-10 Score=115.29 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=117.9
Q ss_pred HHHHHHhCCCCCCcHHHHhHHH--HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 48 VLKGVLKRGYKIPTPIQRKTIP--LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 48 l~~~l~~~g~~~~~~~Q~~~i~--~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..-..+..|...+..+|.+|+. .++.++|.+..+||+.|||++.-+-++..+... ...++.+.|-.+.+++-..
T Consensus 212 ~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv~Ek~~ 287 (1008)
T KOG0950|consen 212 SHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIVQEKIS 287 (1008)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehhHHHHh
Confidence 3333456789999999999974 588899999999999999999999988887652 4579999999999999999
Q ss_pred HHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH----HhccccccCchhhHH-------------H
Q psy18032 126 FVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV----VEMELKLSSIQYTFK-------------F 188 (333)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l----~~~~~~~~~l~~lV~-------------~ 188 (333)
.+..++...|+.+...+|........ +.-++-|+|-|+-..++ +.+. ++.++++|+ .
T Consensus 288 ~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~--~~~~g~vvVdElhmi~d~~rg~~ 361 (1008)
T KOG0950|consen 288 ALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGR--LDFLGMVVVDELHMIGDKGRGAI 361 (1008)
T ss_pred hhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCC--ccccCcEEEeeeeeeeccccchH
Confidence 99999999999998888776654432 34679999999766444 3343 556666664 1
Q ss_pred HHH-Hhhcc----ccceeeeecCCChHH--HHHhhh
Q psy18032 189 VKE-LGKFT----KLQSTCLLGGDSMDN--QFARLH 217 (333)
Q Consensus 189 i~~-l~~~~----~~~~~~l~~sAT~~~--~v~~l~ 217 (333)
++. +.+++ ....|.+.+|||+++ .++.+.
T Consensus 362 lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L 397 (1008)
T KOG0950|consen 362 LELLLAKILYENLETSVQIIGMSATIPNNSLLQDWL 397 (1008)
T ss_pred HHHHHHHHHHhccccceeEeeeecccCChHHHHHHh
Confidence 111 11211 223678999999973 455543
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.1e-10 Score=116.92 Aligned_cols=96 Identities=23% Similarity=0.244 Sum_probs=78.4
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHH----HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIP----LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~----~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.+.+...||+ ++|.|.+.+. .+.+|+++++.||||+|||++|++|++..... +.+++|.+||++|
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~-----~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT-----EKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC-----CCeEEEEeCcHHH
Confidence 445777888888999 8999998666 56678999999999999999999999887652 4489999999999
Q ss_pred HHHHHH-HHHHHhccCC--ceEEEEECCc
Q psy18032 120 ALQTFK-FVKELGKFTK--LQSTCLLGGD 145 (333)
Q Consensus 120 ~~q~~~-~~~~~~~~~~--~~~~~~~g~~ 145 (333)
..|+.. .+..+.+..+ ++++.+.|+.
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~ 333 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKS 333 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcch
Confidence 999865 6776666555 7888887764
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.7e-10 Score=111.42 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=61.1
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++.+++.|. |+++..+|+ +.+.+++|+.|+++|||||+ +++..|+.
T Consensus 445 vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~ 524 (655)
T TIGR00631 445 VLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGF 524 (655)
T ss_pred EEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcccccC
Confidence 4899999999999999997 889999998 23456999999999999998 45554542
Q ss_pred ----cccEEEEccCC---CchhhHHHh
Q psy18032 301 ----GRDVVAMARTG---SGKTACFLF 320 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~l 320 (333)
..|+||+|||| .|+.+.|+-
T Consensus 525 p~~~~~~iqriGRagR~~~G~vi~~~~ 551 (655)
T TIGR00631 525 LRSERSLIQTIGRAARNVNGKVIMYAD 551 (655)
T ss_pred CCCHHHHHHHhcCCCCCCCCEEEEEEc
Confidence 35899999999 576555543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=90.75 Aligned_cols=106 Identities=25% Similarity=0.298 Sum_probs=73.0
Q ss_pred CcHHHHhHHHHHhc-------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 60 PTPIQRKTIPLVLE-------GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~-------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
|++.|.+++..+.+ .+++++.+|||||||.+++..+..... ++++++|+..|+.|..+.+..+..
T Consensus 4 lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 4 LRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp E-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 79999999999885 588999999999999988865444422 799999999999999999976543
Q ss_pred cCCceEE------------EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 133 FTKLQST------------CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 133 ~~~~~~~------------~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
.. .... ..............-....+++++|...+......
T Consensus 76 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~ 128 (184)
T PF04851_consen 76 EK-YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKE 128 (184)
T ss_dssp TS-EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH
T ss_pred hh-hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhccc
Confidence 21 1110 01111111222223344688999999999877654
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.1e-09 Score=110.15 Aligned_cols=103 Identities=18% Similarity=0.073 Sum_probs=65.7
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.|.|+|..+...++.. .-+|+.-..|.|||.-+.+.+...+... ...++|||||. .|..|-...+.+. .++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~k---F~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRR---FNL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHH---hCC
Confidence 3899999998877654 3589999999999988876665554442 23479999998 7888887777542 345
Q ss_pred eEEEEECCcchHHHHH---HhhCCCCEEEECchHHH
Q psy18032 137 QSTCLLGGDSMDNQFA---RLHASPDIVVATPGRFL 169 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~---~l~~~~~IlI~TP~rll 169 (333)
....+.++... .... ......+++|+|-+.+.
T Consensus 225 ~~~i~~~~~~~-~~~~~~~~pf~~~~~vI~S~~~l~ 259 (956)
T PRK04914 225 RFSLFDEERYA-EAQHDADNPFETEQLVICSLDFLR 259 (956)
T ss_pred CeEEEcCcchh-hhcccccCccccCcEEEEEHHHhh
Confidence 44443332211 1000 01113567777766554
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.7e-09 Score=110.27 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=71.5
Q ss_pred HhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH-HHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT-FKFV 127 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~-~~~~ 127 (333)
.-.||+ +++.|.+....+. +++.++++|+||+|||++|++|++... .+.++||++||++|+.|+ .+.+
T Consensus 240 ~~~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~~i 312 (820)
T PRK07246 240 ALLGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAEEV 312 (820)
T ss_pred ccCCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHHHH
Confidence 334777 8999999555543 467899999999999999999988753 256899999999999999 5778
Q ss_pred HHHhccCCceEEEEECCcc
Q psy18032 128 KELGKFTKLQSTCLLGGDS 146 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~ 146 (333)
..+.+..++++.++.|+.+
T Consensus 313 ~~l~~~~~~~~~~~kg~~~ 331 (820)
T PRK07246 313 KAIQEVFHIDCHSLKGPQN 331 (820)
T ss_pred HHHHHhcCCcEEEEECCcc
Confidence 8888888998888887743
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.1e-09 Score=106.96 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=80.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|.++|.-.--.+.. .-|+.+.||=|||+++.+|+.-.... |.-+=|++..-.||.-=.+++..+..+.|+.|
T Consensus 138 ~~ydVQLiGgivLh~--G~IAEM~TGEGKTLvatlp~yLnAL~-----G~gVHvVTvNDYLA~RDaewm~p~y~flGLtV 210 (1025)
T PRK12900 138 VPYDVQLIGGIVLHS--GKISEMATGEGKTLVSTLPTFLNALT-----GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSV 210 (1025)
T ss_pred cccchHHhhhHHhhc--CCccccCCCCCcchHhHHHHHHHHHc-----CCCcEEEeechHhhhhhHHHHHHHHHHhCCee
Confidence 377788766555554 46899999999999999999877666 44577888999999999999999999999999
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.++..+.+..+.. -.-.|+|.+||..-+
T Consensus 211 g~i~~~~~~~~Rr--~aY~~DItYgTn~Ef 238 (1025)
T PRK12900 211 GVILNTMRPEERR--EQYLCDITYGTNNEF 238 (1025)
T ss_pred eeeCCCCCHHHHH--HhCCCcceecCCCcc
Confidence 9997766665532 334699999999654
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.9e-09 Score=97.54 Aligned_cols=68 Identities=29% Similarity=0.368 Sum_probs=53.8
Q ss_pred CCCCCcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|+ |+.-|-+||..+.+| +.-.+.|-||||||+...--+- .+ ..-+||++|.+.||-|.+..++.|
T Consensus 10 ~f~-PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~-~~-------~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 10 PFK-PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIA-KV-------QRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CCC-CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHH-Hh-------CCCeEEEecchhHHHHHHHHHHHh
Confidence 455 888999999998876 4678889999999975443322 22 225999999999999999999998
Q ss_pred hc
Q psy18032 131 GK 132 (333)
Q Consensus 131 ~~ 132 (333)
.-
T Consensus 81 FP 82 (663)
T COG0556 81 FP 82 (663)
T ss_pred Cc
Confidence 53
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.3e-08 Score=98.81 Aligned_cols=221 Identities=19% Similarity=0.125 Sum_probs=134.2
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
+....+.+.++.+..-++++|+||||||.-.=.-+++.-. ..+....+.=|-|-=|..+.+.+.+ ++...|-.|.
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 3455666666777778999999999999644444444322 2244677778999888888777765 4444454454
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeeee
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCLL 204 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l~ 204 (333)
.-.-.++.. .....|-+.|.+.|+..+.... .++.+.++|+ ++.++....+.....+.
T Consensus 128 Y~iRfe~~~------s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIi 200 (845)
T COG1643 128 YSIRFESKV------SPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLII 200 (845)
T ss_pred EEEEeeccC------CCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEE
Confidence 443333221 1257899999999998887543 3788888884 22222222333467899
Q ss_pred cCCChHHH-HHhhhc-CCcEEEeCCC-ceEEEEEec---ch-hhhhH--------------HHHhhcchhhHHHHHHHhc
Q psy18032 205 GGDSMDNQ-FARLHA-SPDIVVATPG-RFLHIVVEM---EL-KLSSI--------------QLSLTDFKQDTSRIALDLV 263 (333)
Q Consensus 205 ~sAT~~~~-v~~l~~-~~~i~~~t~~-~i~~~~~~~---~~-k~~~l--------------~lif~~~~~~~~~l~~~L~ 263 (333)
+|||+..+ +.+... .|.+.+.-.. .+.-+|... +. -...+ .++|.+-.++.++.++.|.
T Consensus 201 mSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~ 280 (845)
T COG1643 201 MSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLE 280 (845)
T ss_pred EecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHH
Confidence 99999644 666655 4444442211 133333111 11 00111 3778888888887777775
Q ss_pred C------CCcccccc------chHHHhhhCCCCcccccccc
Q psy18032 264 G------DSTEMIHK------QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 264 g------~~~~~lh~------~r~~l~~f~~g~~~vLvaTd 292 (333)
. ..+.-+|| |.+.++--..|+-+|++||+
T Consensus 281 ~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATN 321 (845)
T COG1643 281 KAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN 321 (845)
T ss_pred hccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEcc
Confidence 3 44556777 33333444555566999998
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.2e-09 Score=101.08 Aligned_cols=77 Identities=23% Similarity=0.247 Sum_probs=62.8
Q ss_pred HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh-cc--CCceEEEEEC
Q psy18032 67 TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG-KF--TKLQSTCLLG 143 (333)
Q Consensus 67 ~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~--~~~~~~~~~g 143 (333)
+...+.+++.+++.||||+|||++|++|++..+... .+.++||++||++|+.|+++.+..+. +. ..++++.+.|
T Consensus 9 i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~---~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkG 85 (636)
T TIGR03117 9 CLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER---PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPG 85 (636)
T ss_pred HHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc---cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEEC
Confidence 344455678899999999999999999999887631 25689999999999999999999887 43 3577778888
Q ss_pred Ccc
Q psy18032 144 GDS 146 (333)
Q Consensus 144 ~~~ 146 (333)
+.+
T Consensus 86 r~n 88 (636)
T TIGR03117 86 SQE 88 (636)
T ss_pred Ccc
Confidence 765
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=90.99 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHh----HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-CCceEEEEcccHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRK----TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-SGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 55 ~g~~~~~~~Q~~----~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.|+ |+|.|.+ ++..+.+|.++++.||||+|||++|++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 6999999 555566789999999999999999999999876653221 234899999999999998888877
Q ss_pred Hh
Q psy18032 130 LG 131 (333)
Q Consensus 130 ~~ 131 (333)
+.
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=90.99 Aligned_cols=76 Identities=24% Similarity=0.292 Sum_probs=61.0
Q ss_pred CCCCCCcHHHHh----HHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc-CCceEEEEcccHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRK----TIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT-SGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 55 ~g~~~~~~~Q~~----~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.|+ |+|.|.+ ++..+.+|.++++.||||+|||++|++|++..+...... .+.+++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 4566 6999999 555566789999999999999999999999876653221 234899999999999998888877
Q ss_pred Hh
Q psy18032 130 LG 131 (333)
Q Consensus 130 ~~ 131 (333)
+.
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
|
|
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.7e-08 Score=101.32 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=95.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |.++|.-.--.+. +.-++.+.||+|||+++.+|++-.... |..+-+++|+..||.+-++.+..+..++
T Consensus 79 lGm~-~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~-----G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGMR-HFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALS-----GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCCC-cchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 4655 8888886654454 457899999999999999999887666 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH-HHHHhc------cccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEM------ELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll-~~l~~~------~~~~~~l~~lV 186 (333)
|+++.++.++.+.++..... .++|++||..-+- +.++.. ....+.+.+.|
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aI 207 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAV 207 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeE
Confidence 99999998888776654443 3899999998762 333322 11236667666
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=92.71 Aligned_cols=105 Identities=20% Similarity=0.169 Sum_probs=91.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|.-..-.++.|. ++.+.||+|||+++.+|+...... |..+-+++|+..||.+-++.+..+..++
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~-----G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ-----GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc-----CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 4666 8999999998888874 789999999999999999988776 7789999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+++.++.++.+.++..... .|+|.++|..-+-
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~g 179 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIG 179 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccc
Confidence 99999999888776544333 5899999997653
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=6e-08 Score=98.47 Aligned_cols=106 Identities=25% Similarity=0.411 Sum_probs=86.1
Q ss_pred CCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccC
Q psy18032 57 YKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFT 134 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~ 134 (333)
|....|+|.++++.+.+.+ ++++.+|+|||||+|+-++++. +....++++++|..+.+..+++.+.+ +....
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 3445899999999988765 5999999999999999999887 23356999999999999999988885 66667
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~ 171 (333)
|..++.+.|..+.+-. +.+..+++|+||+++-.+
T Consensus 1215 G~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l 1248 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL 1248 (1674)
T ss_pred CceEEecCCccccchH---HhhhcceEEechhHHHHH
Confidence 7888888777766542 334568999999998766
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-08 Score=97.24 Aligned_cols=149 Identities=17% Similarity=0.180 Sum_probs=102.2
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+|. |..+|.+.+-.+-.+++++++|||.+|||.+-...+=..+... ...-+|+++||.+|++|+...........-
T Consensus 509 dF~-Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes---D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 509 DFC-PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES---DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred ccC-CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc---CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 355 8999999999999999999999999999986665554444442 244799999999999999887776432222
Q ss_pred c-eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh---ccccccCchhhHH-HHHHHhhc----------cccce
Q psy18032 136 L-QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE---MELKLSSIQYTFK-FVKELGKF----------TKLQS 200 (333)
Q Consensus 136 ~-~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~---~~~~~~~l~~lV~-~i~~l~~~----------~~~~~ 200 (333)
. +...+.|....+- +.-.-+|+|+|+-|+.+..++.. ..-...+++++|. ++.-+++. .-..+
T Consensus 585 ~~rg~sl~g~ltqEY--sinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li~C 662 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEY--SINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLIPC 662 (1330)
T ss_pred cccchhhHhhhhHHh--cCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhcCC
Confidence 2 2222223222211 11122699999999999998877 4456888999984 22222211 11367
Q ss_pred eeeecCCChH
Q psy18032 201 TCLLGGDSMD 210 (333)
Q Consensus 201 ~~l~~sAT~~ 210 (333)
.++..|||+.
T Consensus 663 P~L~LSATig 672 (1330)
T KOG0949|consen 663 PFLVLSATIG 672 (1330)
T ss_pred CeeEEecccC
Confidence 7889999984
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.7e-08 Score=91.86 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=115.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
.+=++-+|||.||||.- +++++.. ...+++--|.|.||.++++.++. .|+.|..++|.+.....-.
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~-----aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKS-----AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhh-----hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCCC-
Confidence 34588899999999964 4566665 34688999999999999999998 5788888888764433211
Q ss_pred hhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccce-----ee----------eecCCChHHHHHhhh-
Q psy18032 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQS-----TC----------LLGGDSMDNQFARLH- 217 (333)
Q Consensus 154 l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~-----~~----------l~~sAT~~~~v~~l~- 217 (333)
.+.++.+-||-|...--.. ....| +|+|.-+-...+ +. +++-...-+.++++.
T Consensus 257 -~~~a~hvScTVEM~sv~~~--------yeVAV--iDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k 325 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVSVNTP--------YEVAV--IDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILK 325 (700)
T ss_pred -CCcccceEEEEEEeecCCc--------eEEEE--ehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHh
Confidence 1235666666543221000 11111 444433221111 00 111112223344443
Q ss_pred -cCCcEEEeCCCceEEEEEecc--hhhhhH---HHHhhcchhhHHHHHHHhc---CCCcccccc------chHHHhhhCC
Q psy18032 218 -ASPDIVVATPGRFLHIVVEME--LKLSSI---QLSLTDFKQDTSRIALDLV---GDSTEMIHK------QRQSVRKWDP 282 (333)
Q Consensus 218 -~~~~i~~~t~~~i~~~~~~~~--~k~~~l---~lif~~~~~~~~~l~~~L~---g~~~~~lh~------~r~~l~~f~~ 282 (333)
.+.++.+-.-.|+.-+.+... .+++.+ -.|+|.++++...+...+. +.+++++.| +.+.-..|.+
T Consensus 326 ~TGd~vev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd 405 (700)
T KOG0953|consen 326 MTGDDVEVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFND 405 (700)
T ss_pred hcCCeeEEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCC
Confidence 233555555555544444321 122222 2678889999988887775 455777776 4556688966
Q ss_pred --CCcccccccc
Q psy18032 283 --AKKKYVQVTD 292 (333)
Q Consensus 283 --g~~~vLvaTd 292 (333)
++++||||||
T Consensus 406 ~~~e~dvlVAsD 417 (700)
T KOG0953|consen 406 PSNECDVLVASD 417 (700)
T ss_pred CCCccceEEeec
Confidence 9999999999
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.7e-07 Score=90.32 Aligned_cols=104 Identities=21% Similarity=0.222 Sum_probs=72.5
Q ss_pred CcHHHHhHHHHHhcC----------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEG----------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g----------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|+..|.+++..+... +..+++.+||||||++.+..+...+.. .+.+++|||+|..+|..|..+.+..
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~---~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL---LKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh---cCCCeEEEEECcHHHHHHHHHHHHh
Confidence 688899999886432 469999999999998777665444322 2367899999999999999999998
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHH
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIV 172 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l 172 (333)
++.. .. .+..+...-...+.+ ...|+|+|...+...+
T Consensus 316 ~~~~-~~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~ 353 (667)
T TIGR00348 316 LQKD-CA-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKL 353 (667)
T ss_pred hCCC-CC-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhH
Confidence 6531 01 111222222233333 4689999999987643
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-07 Score=92.77 Aligned_cols=85 Identities=22% Similarity=0.270 Sum_probs=64.5
Q ss_pred CCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH-HHHH
Q psy18032 56 GYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF-VKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~-~~~~ 130 (333)
||+ ++|-|.+.+..+. .++.+++.||||+|||++|++|++..... .+.+++|-++|+.|..|+.+. +..+
T Consensus 255 ~~e-~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~----~~~~vvIsT~T~~LQ~Ql~~kDiP~L 329 (928)
T PRK08074 255 KYE-KREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK----KEEPVVISTYTIQLQQQLLEKDIPLL 329 (928)
T ss_pred CCc-CCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc----cCCeEEEEcCCHHHHHHHHHhhHHHH
Confidence 676 8999999666544 46789999999999999999999876543 256899999999999998663 3333
Q ss_pred hcc--CCceEEEEECCc
Q psy18032 131 GKF--TKLQSTCLLGGD 145 (333)
Q Consensus 131 ~~~--~~~~~~~~~g~~ 145 (333)
.+. .+++++++-|..
T Consensus 330 ~~~~~~~~~~~~lKGr~ 346 (928)
T PRK08074 330 QKIFPFPVEAALLKGRS 346 (928)
T ss_pred HHHcCCCceEEEEEccc
Confidence 332 346777766653
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=71.51 Aligned_cols=130 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
..|+. |+++|.-++=.+..|+ +++..||=|||++..+|+.-.... |..+=|++.+..||..=++.+..+.+.
T Consensus 73 ~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~-----G~~V~vvT~NdyLA~RD~~~~~~~y~~ 144 (266)
T PF07517_consen 73 TLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ-----GKGVHVVTSNDYLAKRDAEEMRPFYEF 144 (266)
T ss_dssp HTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT-----SS-EEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh-----cCCcEEEeccHHHhhccHHHHHHHHHH
Confidence 45666 9999999998887766 999999999999999888877666 667999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHH-HHHHhcc----c--cccCchhhHHHHHHHhhc
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME----L--KLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll-~~l~~~~----~--~~~~l~~lV~~i~~l~~~ 195 (333)
+|+.+....++.+..+..+.. .++|+++|...+. +.+.... . ..+...+++ +|+...+
T Consensus 145 LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~i--vDEvDs~ 209 (266)
T PF07517_consen 145 LGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAI--VDEVDSI 209 (266)
T ss_dssp TT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEE--ECTHHHH
T ss_pred hhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEE--EeccceE
Confidence 999999999998866543333 3679999998876 4444321 1 134556666 4444443
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=6e-06 Score=83.57 Aligned_cols=223 Identities=15% Similarity=0.124 Sum_probs=136.7
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
+..+.+.+.++.+.+-++++|.||+|||.=.---++....... .....++--|.|--|..+++++.. .+...|-.|.
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VG 252 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEEVG 252 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCeee
Confidence 6678888888999999999999999999755544555544322 455677777999889888887764 3334454444
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhccc--cceeeeec
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFTK--LQSTCLLG 205 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~~--~~~~~l~~ 205 (333)
.-.+..+... ....+++||-+-|+..+.. .-.+.++..+|+ ++--+..+++ ....++++
T Consensus 253 Yqvrl~~~~s------~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILM 325 (924)
T KOG0920|consen 253 YQVRLESKRS------RETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILM 325 (924)
T ss_pred EEEeeecccC------CceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEe
Confidence 4343333222 1367999999999988876 445677777774 1111222222 46788999
Q ss_pred CCChHHHHHh-h-hcCCcEEEe--CCC------------------ceEEEEE--------------ecchhhhh------
Q psy18032 206 GDSMDNQFAR-L-HASPDIVVA--TPG------------------RFLHIVV--------------EMELKLSS------ 243 (333)
Q Consensus 206 sAT~~~~v~~-l-~~~~~i~~~--t~~------------------~i~~~~~--------------~~~~k~~~------ 243 (333)
|||+..+.-. . ...|.+.+. |.+ .-.+... +.+.+.+.
T Consensus 326 SAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~ 405 (924)
T KOG0920|consen 326 SATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIE 405 (924)
T ss_pred eeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHH
Confidence 9999754322 2 223333331 111 0000000 00011111
Q ss_pred ---------HHHHhhcchhhHHHHHHHhc------C---CCcccccc------chHHHhhhCCCCcccccccc
Q psy18032 244 ---------IQLSLTDFKQDTSRIALDLV------G---DSTEMIHK------QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 244 ---------l~lif~~~~~~~~~l~~~L~------g---~~~~~lh~------~r~~l~~f~~g~~~vLvaTd 292 (333)
-.+||.+.-.+...+.+.|. + +-...+|+ |+.....--.|.-+|++||.
T Consensus 406 ~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTN 478 (924)
T KOG0920|consen 406 YIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATN 478 (924)
T ss_pred hcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhh
Confidence 13677788888888887773 1 33457777 44445777889999999997
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.2e-06 Score=79.19 Aligned_cols=218 Identities=18% Similarity=0.200 Sum_probs=124.2
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceEEEE
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQSTCL 141 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~~~~ 141 (333)
.-.+.+..+-+.+-+++.|.||||||. ++| +.+.+..-...+...+--|-|-=|..+.++.. +++...|-.|...
T Consensus 55 ~r~~il~~ve~nqvlIviGeTGsGKST--Qip--QyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~ 130 (674)
T KOG0922|consen 55 YRDQILYAVEDNQVLIVIGETGSGKST--QIP--QYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYT 130 (674)
T ss_pred HHHHHHHHHHHCCEEEEEcCCCCCccc--cHh--HHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeE
Confidence 344567777777889999999999995 333 33332211223346677788888887766655 4555556566555
Q ss_pred ECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhccc--cceeeeecCC
Q psy18032 142 LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFTK--LQSTCLLGGD 207 (333)
Q Consensus 142 ~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~~--~~~~~l~~sA 207 (333)
..-.+... ....|.+.|-+.|+.-+... -.++...++++ .+--++++.. ....++.+||
T Consensus 131 IRFed~ts------~~TrikymTDG~LLRE~l~D-p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 131 IRFEDSTS------KDTRIKYMTDGMLLREILKD-PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred EEecccCC------CceeEEEecchHHHHHHhcC-CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 43333222 14679999999998655432 23555555553 1111223332 2346889999
Q ss_pred ChH-HHHHhhhcCCcEEEeCCCce---EEEEEec-chhh-----h---hH--------HHHhhcchhhHHHHHHHhcC--
Q psy18032 208 SMD-NQFARLHASPDIVVATPGRF---LHIVVEM-ELKL-----S---SI--------QLSLTDFKQDTSRIALDLVG-- 264 (333)
Q Consensus 208 T~~-~~v~~l~~~~~i~~~t~~~i---~~~~~~~-~~k~-----~---~l--------~lif~~~~~~~~~l~~~L~g-- 264 (333)
|+. +.+.+.-++..++. .|||. .-++... ..+. . .+ .++|..-.++.+..++.|..
T Consensus 204 Tlda~kfS~yF~~a~i~~-i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~ 282 (674)
T KOG0922|consen 204 TLDAEKFSEYFNNAPILT-IPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERA 282 (674)
T ss_pred eecHHHHHHHhcCCceEe-ecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 996 34455544433332 34542 2222221 1000 0 00 27788888888888876641
Q ss_pred --CC------cccccc---chHHHhhh---CCCCcccccccc
Q psy18032 265 --DS------TEMIHK---QRQSVRKW---DPAKKKYVQVTD 292 (333)
Q Consensus 265 --~~------~~~lh~---~r~~l~~f---~~g~~~vLvaTd 292 (333)
.. .-.+|| .++.+.-| -.|.-+|++||+
T Consensus 283 ~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTN 324 (674)
T KOG0922|consen 283 KSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTN 324 (674)
T ss_pred hhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcc
Confidence 11 134666 33334444 558999999997
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-06 Score=83.99 Aligned_cols=85 Identities=29% Similarity=0.318 Sum_probs=63.9
Q ss_pred CCCCCcHHHHhHHHHHh---cC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH-H
Q psy18032 56 GYKIPTPIQRKTIPLVL---EG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF-K 125 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~---~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~-~ 125 (333)
||+ +++-|.+.+..+. .+ +.+++.||||+|||++|++|++-.... .+.+++|-+.|..|-.|+. +
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~----~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA----EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH----cCCeEEEEcCCHHHHHHHHhh
Confidence 777 8999999776655 33 568999999999999999999876554 2568999999999999985 4
Q ss_pred HHHHHhccC--CceEEEEECCc
Q psy18032 126 FVKELGKFT--KLQSTCLLGGD 145 (333)
Q Consensus 126 ~~~~~~~~~--~~~~~~~~g~~ 145 (333)
.+-.+.+.+ .++++++-|..
T Consensus 98 DlP~l~~~l~~~~~~~llKGr~ 119 (697)
T PRK11747 98 DLPLLLKISGLDFKFTLAKGRG 119 (697)
T ss_pred hhhHHHHHcCCCceEEEEcCcc
Confidence 444444444 45566555554
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.8e-06 Score=83.07 Aligned_cols=122 Identities=18% Similarity=0.176 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |.++|.-.--.+. +.-++.+.||-|||+++.+|+.-.... |..+-|++++..||..-.+++..+.+++
T Consensus 82 lG~r-~ydVQliGgl~Lh--~G~IAEM~TGEGKTL~atlpaylnAL~-----GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVLH--EGQIAEMKTGEGKTLVATLPSYLNALT-----GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCCC-cchhHHHhhhhhc--CCceeeecCCCChhHHHHHHHHHHhhc-----CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 4666 8888877665554 457999999999999999999877665 5679999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-----HHHHHh--ccccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-----LHIVVE--MELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-----l~~l~~--~~~~~~~l~~lV 186 (333)
|+.|.++.++.+..+.. ..-.|+|+++|+..+ .+.+.. .....+.+.|.+
T Consensus 154 GLtvg~i~~~~~~~err--~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faI 210 (939)
T PRK12902 154 GLSVGLIQQDMSPEERK--KNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCV 210 (939)
T ss_pred CCeEEEECCCCChHHHH--HhcCCCeEEecCCcccccchhhhhcccccccccCccceEE
Confidence 99999998877665533 334699999999877 344432 122345555555
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.4e-06 Score=82.43 Aligned_cols=259 Identities=12% Similarity=0.002 Sum_probs=156.9
Q ss_pred HHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+.+..+--+....+|.+++..+..|+++++.-.|.+||++||.+.....+... .....+++.|+.++++++.+.+.-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEE
Confidence 34455666778899999999999999999999999999999999988876653 234688999999999987665443
Q ss_pred Hhc-cCCce--EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcccccc----CchhhHH---------------
Q psy18032 130 LGK-FTKLQ--STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS----SIQYTFK--------------- 187 (333)
Q Consensus 130 ~~~-~~~~~--~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~----~l~~lV~--------------- 187 (333)
... ....+ ++-.+.+.+..+...-.+.+.+++++.|.......--+..+.+ ++.+.+.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 211 11222 3334555555555555667899999999877644332222211 1122221
Q ss_pred -HHHHHhhcc-----ccceeeeecCCChHHHHHhh---hc--CCcEE--EeCCCceEEEEEecc--------hhhhhH--
Q psy18032 188 -FVKELGKFT-----KLQSTCLLGGDSMDNQFARL---HA--SPDIV--VATPGRFLHIVVEME--------LKLSSI-- 244 (333)
Q Consensus 188 -~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~l---~~--~~~i~--~~t~~~i~~~~~~~~--------~k~~~l-- 244 (333)
.+..+.++. ....|++-+++|+...++.+ .+ ....+ -++|..-.+++.... .+...+
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E 513 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVE 513 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHH
Confidence 222222221 35788888999986555433 22 12222 245655555554321 111111
Q ss_pred --------------HHHhhcchhhHHHHHHHhc---------------CCCccccccchHHH-hhhCCCCcccccccc--
Q psy18032 245 --------------QLSLTDFKQDTSRIALDLV---------------GDSTEMIHKQRQSV-RKWDPAKKKYVQVTD-- 292 (333)
Q Consensus 245 --------------~lif~~~~~~~~~l~~~L~---------------g~~~~~lh~~r~~l-~~f~~g~~~vLvaTd-- 292 (333)
.+.||..++-||-+-..-+ .|+-.++-.+|+.+ .+.-.|+..-++||+
T Consensus 514 ~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNAL 593 (1034)
T KOG4150|consen 514 VSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNAL 593 (1034)
T ss_pred HHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchh
Confidence 2558888888776643222 22222222345444 666778999999997
Q ss_pred ------CCcccccc-------cccEEEEccCC
Q psy18032 293 ------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 ------~~i~~vi~-------~~~~~~~grtG 311 (333)
..++.|+- +..-|..||+|
T Consensus 594 ELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAG 625 (1034)
T KOG4150|consen 594 ELGIDIGHLDAVLHLGFPGSIANLWQQAGRAG 625 (1034)
T ss_pred hhccccccceeEEEccCchhHHHHHHHhcccc
Confidence 23333442 32667899999
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.2e-06 Score=82.42 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=85.6
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+. |+++|.-..=.+ .+.-++.+.||.|||+++.+|+.-.... |..+-|++++..||.+-++++..+.+++
T Consensus 73 lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~-----G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT-----GKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc-----CCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 4777 889998776444 4568999999999999999999655444 5679999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
|+.+.++.++.+..+.... -.++|.++|..-+
T Consensus 145 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~ 176 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKN--YLKDITYVTNSEL 176 (870)
T ss_pred CCceeeeCCCCChHHHHHh--cCCCCEecCCccc
Confidence 9999999888877664333 3489999999644
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.2e-06 Score=83.22 Aligned_cols=74 Identities=27% Similarity=0.349 Sum_probs=61.4
Q ss_pred HhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
..+...+|++.|.+.+..+. .++.+++.||||+|||++|++|++...... +..++|.++|+.|..|..+...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~----~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE----GKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc----CCcEEEECCCHHHHHHHHHhhc
Confidence 34455569999999886644 355699999999999999999999987662 4689999999999999998887
Q ss_pred HH
Q psy18032 129 EL 130 (333)
Q Consensus 129 ~~ 130 (333)
.+
T Consensus 85 ~~ 86 (654)
T COG1199 85 PI 86 (654)
T ss_pred ch
Confidence 75
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=4.1e-07 Score=91.10 Aligned_cols=75 Identities=16% Similarity=0.156 Sum_probs=59.7
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++++++.|. |+++..+|+ +.+.++.|+.|++++||||+ +++..|+.
T Consensus 449 viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii~d~eifG~ 528 (652)
T PRK05298 449 VLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAILDADKEGF 528 (652)
T ss_pred EEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEEeCCccccc
Confidence 5889999999999999997 889999998 33567999999999999998 44444443
Q ss_pred ----cccEEEEccCC---CchhhHHH
Q psy18032 301 ----GRDVVAMARTG---SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~ 319 (333)
..|+||+|||| .|+++.|+
T Consensus 529 ~~~~~~yiqr~GR~gR~~~G~~i~~~ 554 (652)
T PRK05298 529 LRSERSLIQTIGRAARNVNGKVILYA 554 (652)
T ss_pred CCCHHHHHHHhccccCCCCCEEEEEe
Confidence 24999999999 45544443
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.2e-05 Score=55.92 Aligned_cols=60 Identities=30% Similarity=0.407 Sum_probs=42.1
Q ss_pred HHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 67 TIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 67 ~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
++...+.+.+ +++.||+|||||....--+...+...... +.++++++|++..+.++.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 4453333555 55599999999976665555555322222 568999999999999998887
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=80.61 Aligned_cols=75 Identities=20% Similarity=0.192 Sum_probs=63.4
Q ss_pred CCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+.|+.++|.|.+.+..+.+ |.+.++.||||+|||+|.+.|++......+ ..++.++.+.|..=..|..+.++++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 4678779999988777554 788999999999999999999999876522 2368999999999999999999985
Q ss_pred h
Q psy18032 131 G 131 (333)
Q Consensus 131 ~ 131 (333)
.
T Consensus 84 ~ 84 (705)
T TIGR00604 84 M 84 (705)
T ss_pred h
Confidence 3
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=73.23 Aligned_cols=152 Identities=22% Similarity=0.288 Sum_probs=87.3
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQS 138 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 138 (333)
.+.-.+.+.++...+=+++.|.||||||. ++| +.+.... .+.|.+.=+--|-|--|..+..+.. +++..+|-.|
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTT--QiP--QyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTT--QIP--QYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccc--ccc--HHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 34455666777777779999999999995 455 3343322 1223345566799988988866555 4444444333
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------------HHHHHhhccccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------------FVKELGKFTKLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------------~i~~l~~~~~~~~~~l 203 (333)
..-..-.+... +..-|-+.|-+.|+.-+.. ..++.+...+++ .+.|+.++- ....++
T Consensus 343 GYsIRFEdcTS------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R-pdLKll 414 (902)
T KOG0923|consen 343 GYSIRFEDCTS------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR-PDLKLL 414 (902)
T ss_pred ceEEEeccccC------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC-CcceEE
Confidence 32221111111 1345778999988854432 233444444442 455555533 345678
Q ss_pred ecCCChH-HHHHhhhcCCcEEE
Q psy18032 204 LGGDSMD-NQFARLHASPDIVV 224 (333)
Q Consensus 204 ~~sAT~~-~~v~~l~~~~~i~~ 224 (333)
..|||+. +....+..+..|..
T Consensus 415 IsSAT~DAekFS~fFDdapIF~ 436 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFDDAPIFR 436 (902)
T ss_pred eeccccCHHHHHHhccCCcEEe
Confidence 9999996 44555554444443
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=80.08 Aligned_cols=121 Identities=16% Similarity=0.190 Sum_probs=84.1
Q ss_pred EECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH----h
Q psy18032 79 AMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR----L 154 (333)
Q Consensus 79 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----l 154 (333)
..+.+|||||..|+-.+-..+.. |.++||++|...|..|+.+.++... .+..++.++++.+..+..+. .
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f--~~~~v~~lhS~l~~~~R~~~w~~~~ 237 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALL--GAGDVAVLSAGLGPADRYRRWLAVL 237 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHc--CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 33446999999999887777666 7789999999999999999999743 12668888888876655433 2
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhHH----------------HHHHHhhcc--ccceeeeecCCChHHHH
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----------------FVKELGKFT--KLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----------------~i~~l~~~~--~~~~~~l~~sAT~~~~v 213 (333)
...++|+|||-.-+. .-+++++++|+ ...++.... ..+..++++|||-+-+.
T Consensus 238 ~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 238 RGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred CCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 334899999953322 34667777775 122222111 24677889999976443
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=7e-05 Score=64.93 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=50.4
Q ss_pred CcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhh----hcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKT----HAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~----~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++.|.+|+..+++..+ .+++||+|||||.... .++..+.. .....+.++|+++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 9999999999995333 33333311 1123467899999999999999998887
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.2e-06 Score=77.92 Aligned_cols=41 Identities=44% Similarity=0.651 Sum_probs=39.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
..||+.+++.++.+.++||||||+||++|+||++++..|.|
T Consensus 98 ~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~ 138 (758)
T KOG0343|consen 98 DTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSP 138 (758)
T ss_pred hhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCC
Confidence 68999999999999999999999999999999999999975
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00015 Score=65.59 Aligned_cols=94 Identities=16% Similarity=0.088 Sum_probs=57.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+..+++-..|+|||+..+..+..............+||++|. .+..+-.+.+.++......++....|+..........
T Consensus 26 ~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 104 (299)
T PF00176_consen 26 RGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQ 104 (299)
T ss_dssp -EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSS
T ss_pred CCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccccccccccccccccccccccc
Confidence 568899999999997766555432222111122259999999 8888999999998754466666666665222222223
Q ss_pred hCCCCEEEECchHHH
Q psy18032 155 HASPDIVVATPGRFL 169 (333)
Q Consensus 155 ~~~~~IlI~TP~rll 169 (333)
....+++|+|.+.+.
T Consensus 105 ~~~~~vvi~ty~~~~ 119 (299)
T PF00176_consen 105 LPKYDVVITTYETLR 119 (299)
T ss_dssp CCCSSEEEEEHHHHH
T ss_pred cccceeeeccccccc
Confidence 346899999998888
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.6e-06 Score=82.07 Aligned_cols=124 Identities=21% Similarity=0.284 Sum_probs=95.3
Q ss_pred CCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 57 YKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+..+.|+|.+.+-.+.. ..++++-+|||+|||.+|.+++...+... .+.++++++|..+|+....+.+.......|
T Consensus 925 ~~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 925 YKYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred hcccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCC
Confidence 44667788877766544 46799999999999999999998887763 356899999999999999999987655568
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc--cccccCchhhH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--ELKLSSIQYTF 186 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~--~~~~~~l~~lV 186 (333)
++++-+.|+...+- ..+ ..++++|+||++.-...+.. .-.+.+++.+|
T Consensus 1002 ~k~ie~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv 1051 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIV 1051 (1230)
T ss_pred ceeEeccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhcccccee
Confidence 99999998887652 222 25789999999987766632 23455666666
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=97.65 E-value=6.2e-05 Score=59.80 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=57.2
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+|+=.++-..+|+|||--.+.-++..... ++.++|||.|||.++.++.+.++. ..++.. ......
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~----~~~~~~---t~~~~~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKG----LPVRFH---TNARMR---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTT----SSEEEE---STTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhc----CCcccC---ceeeec----
Confidence 45557888999999998776666654444 377999999999999999998875 233221 111100
Q ss_pred HhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
....+.-|=+.|-.-+...+.+ .....+..++|
T Consensus 68 ~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II 100 (148)
T PF07652_consen 68 THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVII 100 (148)
T ss_dssp ---SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEE
T ss_pred cccCCCcccccccHHHHHHhcC-cccccCccEEE
Confidence 1122344566676666655544 33455666666
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=3.4e-05 Score=70.10 Aligned_cols=39 Identities=41% Similarity=0.663 Sum_probs=36.0
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
..||.++++.++.+.+.||||||+||+||+|++++....
T Consensus 90 ~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~ 128 (476)
T KOG0330|consen 90 EAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK 128 (476)
T ss_pred hhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC
Confidence 679999999999999999999999999999999987543
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00075 Score=65.72 Aligned_cols=99 Identities=21% Similarity=0.199 Sum_probs=58.8
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH-HhccCCceEE
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE-LGKFTKLQST 139 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 139 (333)
-..+.+.+..+...+=+++.+.||||||.- +| +.+....-...+..-+--|.|.-|..+++.... ++-.+|-.|.
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 446677777777777799999999999953 22 333332111223444555899989888877764 4333444443
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
..+.-.+... ....|-+.|-+-|+
T Consensus 434 YsIRFEdvT~------~~T~IkymTDGiLL 457 (1042)
T KOG0924|consen 434 YSIRFEDVTS------EDTKIKYMTDGILL 457 (1042)
T ss_pred eEEEeeecCC------CceeEEEeccchHH
Confidence 3332221111 13457788888777
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0005 Score=69.36 Aligned_cols=105 Identities=19% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|.. |+++|.-.--.+..| -++.+.||=|||+++.+|+.-.... |..+-|++..-.||..=.+++..+..++
T Consensus 75 lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~-----GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT-----GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc-----CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 4665 899998888777666 4899999999999999998765555 5568899999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
|+.|.+...+.+..+..... .|+|.++|...+-
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~g 179 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELG 179 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccc
Confidence 99999998877666543332 5899999997654
|
|
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00037 Score=63.38 Aligned_cols=70 Identities=27% Similarity=0.227 Sum_probs=54.2
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+|+-|.+++.. ...+++|.|+.|||||.+.+--+...+.... -...+.|++++|+..+.++.+++.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 47889999988 6679999999999999987776666665532 2245799999999999999999998543
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00029 Score=68.31 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=69.7
Q ss_pred HHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.+...|+.+++..|..|..+++...=.|++||+|+|||..-.--+.+.+.. .+..+|+.+|+---+.|+.+.+.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~- 476 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHK- 476 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHh-
Confidence 445567888999999999999998889999999999997666555555544 356799999999999999999997
Q ss_pred hccCCceEEEEEC
Q psy18032 131 GKFTKLQSTCLLG 143 (333)
Q Consensus 131 ~~~~~~~~~~~~g 143 (333)
+|++++-+..
T Consensus 477 ---tgLKVvRl~a 486 (935)
T KOG1802|consen 477 ---TGLKVVRLCA 486 (935)
T ss_pred ---cCceEeeeeh
Confidence 6788776654
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=97.46 E-value=2e-05 Score=56.31 Aligned_cols=50 Identities=18% Similarity=0.332 Sum_probs=39.1
Q ss_pred cCCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCCC
Q psy18032 263 VGDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTGS 312 (333)
Q Consensus 263 ~g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG~ 312 (333)
.|+++..+|| +.+.+++|.+++..+|+||+ +++..|+. ..|.|++||+|.
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 3899999998 33566999999999999998 34444553 458999999983
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00059 Score=67.97 Aligned_cols=117 Identities=19% Similarity=0.214 Sum_probs=81.4
Q ss_pred CCcHHHHhHHHHHhc----CCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLE----GRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.|+..|..||..+.+ |++ +|+++.||+|||..++ +++.++.+.. .-.++|+|+-.++|+.|-+..+..+.-.
T Consensus 165 ~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~--~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 165 GPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG--WVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred cchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc--hhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 588999999887665 544 9999999999996543 4556655532 2458999999999999999998886432
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-----cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-----ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-----~~~~~~l~~lV~ 187 (333)
+-.+..+.+.. .. ..++|.++|-..+...+... .+......++|+
T Consensus 242 -~~~~n~i~~~~-~~-------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 -GTKMNKIEDKK-GD-------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred -ccceeeeeccc-CC-------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 22222222211 11 15789999999988777655 345555677774
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00098 Score=56.71 Aligned_cols=63 Identities=29% Similarity=0.363 Sum_probs=45.5
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
++++-|.+++..++...+ .+++||.|+|||.+ +-.+...+.. .+.++++++||..-+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHh
Confidence 368899999999976553 77889999999964 3334444444 367899999999998886665
|
|
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=65.92 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 59 IPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
.+++.|.+++..++.. ..++++||+|||||....--+.+.+.. +.++|+++||..-+.++.+.+... +++
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~-----g~~VLv~a~sn~Avd~l~e~l~~~----~~~ 227 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR-----GLRVLVTAPSNIAVDNLLERLALC----DQK 227 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc-----CCCEEEEcCcHHHHHHHHHHHHhC----CCc
Confidence 4688999999998886 568999999999996555444444333 568999999999999998888762 455
Q ss_pred EEEEE
Q psy18032 138 STCLL 142 (333)
Q Consensus 138 ~~~~~ 142 (333)
++-+.
T Consensus 228 vvRlg 232 (637)
T TIGR00376 228 IVRLG 232 (637)
T ss_pred EEEeC
Confidence 44443
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=97.35 E-value=6.7e-05 Score=67.51 Aligned_cols=38 Identities=45% Similarity=0.711 Sum_probs=35.9
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.+||.++++.++.++++||||||.||.||+|+++-++.
T Consensus 36 ~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP 73 (442)
T KOG0340|consen 36 ACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP 73 (442)
T ss_pred hhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC
Confidence 68999999999999999999999999999999998764
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00023 Score=62.43 Aligned_cols=82 Identities=18% Similarity=0.259 Sum_probs=68.2
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCc-chHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 105 TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGD-SMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 105 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
...|.+|||+.+---|-++.+.++.+. .-+..++-++... ..+++...+.. ..+|.||||+|+..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 346899999999999999999999863 1134555566664 77888888875 58999999999999999999999999
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|+
T Consensus 203 ~~ivl 207 (252)
T PF14617_consen 203 KRIVL 207 (252)
T ss_pred eEEEE
Confidence 99996
|
|
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0065 Score=52.41 Aligned_cols=130 Identities=18% Similarity=0.277 Sum_probs=83.7
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc---CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE---GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~---g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.+|+-...+.+++=.+. .++- .++.|.+....+.+ |+|.+.+.-.|.|||.+ ++|++..+..+ .+.-+-++
T Consensus 3 ~~w~p~~~P~wLl~E~e-~~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIE-SNIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVI 76 (229)
T ss_pred CCCCchhChHHHHHHHH-cCce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEE
Confidence 46777777777764443 3555 79999999999887 57999999999999964 55666655542 23355566
Q ss_pred cccHHHHHHHHHHHHH-HhccCCceEEEE--ECCcch--H--HHH----HHhhCCCCEEEECchHHHHHHH
Q psy18032 114 SPTRELALQTFKFVKE-LGKFTKLQSTCL--LGGDSM--D--NQF----ARLHASPDIVVATPGRFLHIVV 173 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~--~g~~~~--~--~~~----~~l~~~~~IlI~TP~rll~~l~ 173 (333)
+| ++|..|..+.++. ++.-.+-++..+ .-.... . +.. +.....-.|+++|||.++.+.-
T Consensus 77 Vp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L 146 (229)
T PF12340_consen 77 VP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKL 146 (229)
T ss_pred cC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHH
Confidence 66 4689999998886 443344333332 122211 1 111 1222345699999999887643
|
There are two conserved sequence motifs: LLE and NMG. |
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00015 Score=66.99 Aligned_cols=34 Identities=59% Similarity=0.907 Sum_probs=32.3
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhc
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~ 326 (333)
..||..++++++...+|||||||.||++|++|.|
T Consensus 48 ~aIplaLEgKDvvarArTGSGKT~AYliPllqkl 81 (569)
T KOG0346|consen 48 SAIPLALEGKDVVARARTGSGKTAAYLIPLLQKL 81 (569)
T ss_pred cccchhhcCcceeeeeccCCCchHHHHHHHHHHH
Confidence 5899999999999999999999999999999976
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.001 Score=64.02 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=55.3
Q ss_pred CCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+.+.|.+|+....+.++ .+++||+|+|||.....-+.+.+.. +.++|+.+||.+-+..+.+.+-
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHhc
Confidence 467899999999888877 8899999999998877777777666 5699999999999988888654
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00027 Score=55.28 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=52.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccccc-------cc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVL-------EG 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi-------~~ 301 (333)
.+|||++...++.+++.|. +..+..+|| .+ ..++.|.++...+|++|. +..+.++ -.
T Consensus 31 ~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~ 110 (131)
T cd00079 31 VLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPS 110 (131)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHH
Confidence 4789999999999999997 778889997 23 445999999999999997 2223333 14
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.+.|++||+|
T Consensus 111 ~~~Q~~GR~~ 120 (131)
T cd00079 111 SYLQRIGRAG 120 (131)
T ss_pred Hheecccccc
Confidence 5889999998
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0068 Score=63.44 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=72.2
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.+.++|.+.+.-++ +|.+.|+.-..|.|||+-.+ .++..+...... ...+|||||.. +..+-.+.+++++ .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~-~gp~LIVvP~S-lL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGI-TGPHMVVAPKS-TLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCC-CCCEEEEeChH-HHHHHHHHHHHHC--C
Confidence 57999999998765 57889999999999998543 333333321122 33689999974 5566777788764 4
Q ss_pred CceEEEEECCcchHHHHHH---hhCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFAR---LHASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~---l~~~~~IlI~TP~rll~~ 171 (333)
.+++..++|.......... .....+|+|+|.+.+...
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e 283 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE 283 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH
Confidence 5677777776543322211 123588999999887643
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.008 Score=62.01 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=40.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.|+.+.++||||||.+|+-.++..... -.-.+.||+||+.+.-.-+.+.++
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~---~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQK---YGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHH---cCCcEEEEEeCCHHHHHHHHHHhh
Confidence 479999999999999999888765443 123579999999998887776655
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00058 Score=59.80 Aligned_cols=124 Identities=19% Similarity=0.369 Sum_probs=96.1
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
..+++|.||.|-+....... +..++..++.++....++.++.+.++++..+.+++.+||||+.+++..
T Consensus 95 ~tQ~lilsPTRELa~Qi~~v------------i~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr 162 (400)
T KOG0328|consen 95 ETQALILSPTRELAVQIQKV------------ILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR 162 (400)
T ss_pred eeeEEEecChHHHHHHHHHH------------HHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh
Confidence 47899999999998887776 778888888888888999999999999999999999999998777655
Q ss_pred cchhhhhHHHHhh---------cchhhHHHHHHHhc-CCCcccccc-----chHHHhhhCCCCcccccccc
Q psy18032 237 MELKLSSIQLSLT---------DFKQDTSRIALDLV-GDSTEMIHK-----QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 237 ~~~k~~~l~lif~---------~~~~~~~~l~~~L~-g~~~~~lh~-----~r~~l~~f~~g~~~vLvaTd 292 (333)
.......+.+++. -++.+...++.+|. |..+.++.+ -.+..++|...-+++||--|
T Consensus 163 ~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrd 233 (400)
T KOG0328|consen 163 RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRD 233 (400)
T ss_pred ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecC
Confidence 4444444433333 36677777777776 666655555 23555999999999999776
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0019 Score=54.98 Aligned_cols=59 Identities=25% Similarity=0.245 Sum_probs=42.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+..|+-|..++.++++..-+++.||.|||||+.++..+++.+... .-.+.+|.-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCC
Confidence 445889999999999777799999999999999999999988762 23467888887764
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00091 Score=64.15 Aligned_cols=82 Identities=37% Similarity=0.622 Sum_probs=68.4
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
+|.+||-+|.|-+..+.+.. ..++..-+..+..+++++++..+++..+.++.+|+++||||+.+++..
T Consensus 165 ~P~vLVL~PTRELA~QV~~~------------~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~ 232 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAE------------AREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE 232 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHH------------HHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc
Confidence 68999999999998887765 677777777889999999999999999999999999999999888877
Q ss_pred cchhhhhHHHHhhc
Q psy18032 237 MELKLSSIQLSLTD 250 (333)
Q Consensus 237 ~~~k~~~l~lif~~ 250 (333)
....+..+.+++.+
T Consensus 233 g~~~l~~v~ylVLD 246 (519)
T KOG0331|consen 233 GSLNLSRVTYLVLD 246 (519)
T ss_pred CCccccceeEEEec
Confidence 66665555444443
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0062 Score=56.77 Aligned_cols=127 Identities=16% Similarity=0.229 Sum_probs=70.8
Q ss_pred CcccccCCCHHHHHHHHhC---C--CCCCcH---HHHhHHHH----H-------hcCCcEEEECCCCcHHHHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKR---G--YKIPTP---IQRKTIPL----V-------LEGRDVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~---g--~~~~~~---~Q~~~i~~----i-------~~g~d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
..+.+.|+++.+.+.|-+. + ...+.. +....+.. + -.|..++++||||+|||....--+..
T Consensus 81 ~~L~~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 81 KYLFAAGFSAQLVRMIVDNLPEGEGYDTLDAAADWAQSVLAANLPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred HHHHHCCCCHHHHHHHHHhhhhhcccCCHHHHHHHHHHHHHhcchhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4566778888887776442 1 112212 22222211 1 12457999999999999755533333
Q ss_pred HhhhhcccCC-ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 98 KLKTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 98 ~l~~~~~~~~-~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.... .+ .++.++. +-..-.--.+.++.+++..++.+..+..+.........+.+..-|+|=||++.
T Consensus 161 ~~~~----~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 161 CVMR----FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHh----cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCEEEEcCCCCC
Confidence 2222 12 2333333 33321122344556666678887777666666665666666566889999865
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.023 Score=53.72 Aligned_cols=92 Identities=21% Similarity=0.111 Sum_probs=58.8
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
+....|...+.++...+.|++.-=-.-+..+.+-+..+.+.+-++++|.||||||.-.=-..+..... ....+..-
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~----~~~~v~CT 97 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELS----HLTGVACT 97 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHh----hccceeec
Confidence 34778999999999999998752221244455556667777889999999999995211111121111 12345555
Q ss_pred cccHHHHHHHHHHHHH
Q psy18032 114 SPTRELALQTFKFVKE 129 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~ 129 (333)
-|-|--|.++..+...
T Consensus 98 Qprrvaamsva~RVad 113 (699)
T KOG0925|consen 98 QPRRVAAMSVAQRVAD 113 (699)
T ss_pred CchHHHHHHHHHHHHH
Confidence 6888878877665554
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.00084 Score=68.26 Aligned_cols=39 Identities=41% Similarity=0.712 Sum_probs=35.3
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
..||.|..+.++.+++-||+|||++|+||++ |+..+|+.
T Consensus 394 qAiP~ImsGrdvIgvakTgSGKT~af~LPmi-rhi~dQr~ 432 (997)
T KOG0334|consen 394 QAIPAIMSGRDVIGVAKTGSGKTLAFLLPMI-RHIKDQRP 432 (997)
T ss_pred hhcchhccCcceEEeeccCCccchhhhcchh-hhhhcCCC
Confidence 5899999999999999999999999999999 77776653
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.00082 Score=47.74 Aligned_cols=54 Identities=26% Similarity=0.366 Sum_probs=38.7
Q ss_pred HHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 258 IALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 258 l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+++.|. ++.+..+|| ++ +.++.|.+++..+|++|+ +++..++. ..+.|++||+|
T Consensus 3 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 3 LAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 444454 788889998 23 456999999999999998 22334432 45788999988
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.025 Score=57.01 Aligned_cols=67 Identities=31% Similarity=0.430 Sum_probs=52.7
Q ss_pred CCCCCcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+|. |++.|..++..+.++ +..++.|.+|||||+... .++... +..+|||+|+...|.+.++.++.+
T Consensus 10 ~~~-~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~~-------~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 10 PYK-PAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIARL-------QRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCC-CChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHHh-------CCCEEEEECCHHHHHHHHHHHHHh
Confidence 455 999999999998654 257799999999997643 222221 236999999999999999999987
Q ss_pred h
Q psy18032 131 G 131 (333)
Q Consensus 131 ~ 131 (333)
.
T Consensus 81 ~ 81 (652)
T PRK05298 81 F 81 (652)
T ss_pred c
Confidence 5
|
|
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0018 Score=61.06 Aligned_cols=97 Identities=19% Similarity=0.167 Sum_probs=72.0
Q ss_pred CCcHHHHhHHHHHhc-C--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 59 IPTPIQRKTIPLVLE-G--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~-g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
.++|+|.+++..+.- | ++-+++.|-|+|||++-+-+++.. ...||+++.+---+.|...++..+....+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 478999999999775 3 689999999999999877665543 34799999999999999999988765545
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
-.++.++.+... ....++.|+|+|-..+
T Consensus 374 ~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMv 401 (776)
T KOG1123|consen 374 DQICRFTSDAKE-----RFPSGAGVVVTTYSMV 401 (776)
T ss_pred cceEEeeccccc-----cCCCCCcEEEEeeehh
Confidence 555555544322 1234688888886544
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.049 Score=56.58 Aligned_cols=81 Identities=31% Similarity=0.284 Sum_probs=55.0
Q ss_pred cHHHHhHHHHHhc----C----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 61 TPIQRKTIPLVLE----G----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 61 ~~~Q~~~i~~i~~----g----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+|-+|+..+.+ . -=++--|.||+|||++=.=-+.. +.. ...|.+..|-.-.|.|-.|.-+.+++-..
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya-Lsd--~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA-LRD--DKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH-hCC--CCCCceEEEEccccceeccchHHHHHhcC
Confidence 4599999998776 1 12666789999999864432222 222 23467888888999999998888887544
Q ss_pred cCCceEEEEECC
Q psy18032 133 FTKLQSTCLLGG 144 (333)
Q Consensus 133 ~~~~~~~~~~g~ 144 (333)
..+-..++++|+
T Consensus 487 L~~ddLAVlIGs 498 (1110)
T TIGR02562 487 LSDDDLAVLIGG 498 (1110)
T ss_pred CCccceEEEECH
Confidence 334455555554
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.023 Score=53.63 Aligned_cols=96 Identities=25% Similarity=0.353 Sum_probs=73.8
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-ccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 234 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~ 234 (333)
++..++|.+|.|.+.+..... ..++.++. ....+.+.++...+.+..++.+++.++++||||+.+|+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~e------------ak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHl 220 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAE------------AKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHL 220 (543)
T ss_pred CCeeEEEecccHHHHHHHHHH------------HHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHh
Confidence 467899999999999988776 77777777 56789999999999999999999999999999999999
Q ss_pred EecchhhhhH----------HHHhhcchhhHHHHHHHhc
Q psy18032 235 VEMELKLSSI----------QLSLTDFKQDTSRIALDLV 263 (333)
Q Consensus 235 ~~~~~k~~~l----------~lif~~~~~~~~~l~~~L~ 263 (333)
.+......+. .+.=..++++.+.+...|.
T Consensus 221 qNt~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lp 259 (543)
T KOG0342|consen 221 QNTSGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILP 259 (543)
T ss_pred hcCCcchhhccceeEeecchhhhhcccHHHHHHHHHhcc
Confidence 7654322211 1233346777777775554
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.012 Score=59.21 Aligned_cols=141 Identities=21% Similarity=0.239 Sum_probs=84.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc----EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD----VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d----~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
-.|+.+.. .++...+.-..=.+|+|+|+.|+....+|-. -=+.+..|+|||+..+ -+.+.+.. .++|+
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~------~~iL~ 211 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA------ARILF 211 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh------hheEe
Confidence 35555543 3444444433445699999999999998621 2334556999998665 33344333 58999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchH--------------------HHHHHh-----hCCCCEEEECchH
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD--------------------NQFARL-----HASPDIVVATPGR 167 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~--------------------~~~~~l-----~~~~~IlI~TP~r 167 (333)
++|+..|..|..+.+..- +.+.++...+.++.... .....+ .++--|+++|-..
T Consensus 212 LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQS 290 (1518)
T COG4889 212 LVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQS 290 (1518)
T ss_pred ecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccc
Confidence 999999999998888763 23455555554432211 111111 1235577777766
Q ss_pred HHHHHHhccccccCchhhH
Q psy18032 168 FLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 168 ll~~l~~~~~~~~~l~~lV 186 (333)
+...-+.....+..+.+++
T Consensus 291 l~~i~eAQe~G~~~fDlii 309 (1518)
T COG4889 291 LPRIKEAQEAGLDEFDLII 309 (1518)
T ss_pred hHHHHHHHHcCCCCccEEE
Confidence 6655544444455555555
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0018 Score=61.56 Aligned_cols=36 Identities=42% Similarity=0.704 Sum_probs=33.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+||.++++.+..--++||+|||+||++|+++.|..
T Consensus 166 q~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~ 201 (708)
T KOG0348|consen 166 QAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQA 201 (708)
T ss_pred cchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHh
Confidence 689999999999999999999999999999998764
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=51.82 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=34.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhh
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTH 102 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~ 102 (333)
+....+|+++++++-+.+.+.. .+. ++|.||||||||. -+-+++..++++
T Consensus 102 p~~i~~~e~LglP~i~~~~~~~-------------------~~GLILVTGpTGSGKST-TlAamId~iN~~ 152 (353)
T COG2805 102 PSKIPTLEELGLPPIVRELAES-------------------PRGLILVTGPTGSGKST-TLAAMIDYINKH 152 (353)
T ss_pred CccCCCHHHcCCCHHHHHHHhC-------------------CCceEEEeCCCCCcHHH-HHHHHHHHHhcc
Confidence 4566788888888766653221 122 8999999999995 344666776663
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.02 Score=57.87 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=56.9
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
..+++-|.+++-. ...+++|.|..|||||.+.+--+...+... ...+.++|+++.|+..|.++.+++.......++.
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~ 271 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRERLGTEDIT 271 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcE
Confidence 3589999998853 335799999999999987665554444332 1224589999999999999999988744322344
Q ss_pred EEE
Q psy18032 138 STC 140 (333)
Q Consensus 138 ~~~ 140 (333)
+..
T Consensus 272 v~T 274 (684)
T PRK11054 272 ART 274 (684)
T ss_pred EEe
Confidence 433
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.036 Score=49.93 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=14.6
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++||||+|||....
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999996444
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.016 Score=51.01 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=45.3
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
++..-+..|...+..+.+...+++.||+|||||+......++.+... .-.+.+|.-|+.+
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCC
Confidence 45556889999999999888899999999999998888777766441 1234555556654
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.03 Score=53.44 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=47.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHh-hhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKL-KTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
|+.+++.+|||+|||....--+.... .. .+.++.++.- .+.-+. +.++.++...++.+............
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~----~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~~~~~~~l~~~ 293 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY----GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEVVYDPKELAKA 293 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc----CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEccCCHHhHHHH
Confidence 45689999999999965442222221 12 1334555442 222222 44555555567766555444444444
Q ss_pred HHHhhCCCCEEEECchH
Q psy18032 151 FARLHASPDIVVATPGR 167 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~r 167 (333)
...+...-.|||=||++
T Consensus 294 l~~~~~~DlVlIDt~G~ 310 (424)
T PRK05703 294 LEQLRDCDVILIDTAGR 310 (424)
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 44444333488999987
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.027 Score=49.90 Aligned_cols=69 Identities=16% Similarity=0.217 Sum_probs=45.9
Q ss_pred CCCCCCcHHHHhHHHHHh-------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVL-------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~-------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
..|......+..++..+. .++++++.||+|+|||..+..-. +.+.. .+.-++++++.+|+.++...+
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~-~~l~~-----~g~sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIG-NELLK-----AGISVLFITAPDLLSKLKAAF 152 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHH-HHHHH-----cCCeEEEEEHHHHHHHHHHHH
Confidence 345555555666555443 46799999999999996544333 33333 245677789999999887766
Q ss_pred HH
Q psy18032 128 KE 129 (333)
Q Consensus 128 ~~ 129 (333)
..
T Consensus 153 ~~ 154 (254)
T COG1484 153 DE 154 (254)
T ss_pred hc
Confidence 63
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.023 Score=52.04 Aligned_cols=66 Identities=29% Similarity=0.459 Sum_probs=44.1
Q ss_pred HHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++.|.+.|+ +++.|.+.+.. +..+++++++|+|||||| .++-.++..+... ...-+.+++-.+.||
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~--~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQ--DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhc--CCCceEEEEcCCCcc
Confidence 344555565 46777777776 556789999999999999 4555555554221 123467777777776
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.012 Score=57.76 Aligned_cols=92 Identities=34% Similarity=0.521 Sum_probs=71.2
Q ss_pred EEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc-ccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEecc
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME 238 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~~ 238 (333)
.||.+|.|.+....... ...+.+.. ..+..+++++..+..+...+..+++|+++||||+.+++....
T Consensus 102 aLil~PTRELA~Qi~~~------------~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~ 169 (513)
T COG0513 102 ALILAPTRELAVQIAEE------------LRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGK 169 (513)
T ss_pred eEEECCCHHHHHHHHHH------------HHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCC
Confidence 89999999998877655 56666666 567888899999999998898889999999999998887776
Q ss_pred hhhhhHHHHhhc---------chhhHHHHHHHhc
Q psy18032 239 LKLSSIQLSLTD---------FKQDTSRIALDLV 263 (333)
Q Consensus 239 ~k~~~l~lif~~---------~~~~~~~l~~~L~ 263 (333)
.++..+.+++.+ +.++.+.+...+.
T Consensus 170 l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p 203 (513)
T COG0513 170 LDLSGVETLVLDEADRMLDMGFIDDIEKILKALP 203 (513)
T ss_pred cchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCC
Confidence 666665444333 6666666665554
|
|
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.02 Score=58.02 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=54.7
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+++-|.+++... .-.++|.|+.|||||.+..--+...+.... -...+.|+++.|+.-|.++.+++..+.
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3789999998652 457999999999999887776666665321 123479999999999999999998753
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.038 Score=50.59 Aligned_cols=65 Identities=25% Similarity=0.271 Sum_probs=42.3
Q ss_pred HHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
.+.+.|. +++.|.+.+.. +..+.+++++|+||||||. ++-+++..+...+ .+-+.+.+=.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTT-ll~aL~~~i~~~~--~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTT-LANAVIAEIVASA--PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHHhcCC--CCceEEEecCCcccc
Confidence 3445554 46677777666 5556799999999999995 4455555553211 133677777777763
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.08 Score=51.47 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=48.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
.|+.+.++||||+|||....--+...... ..+.++.++. +.+.-+. ++++.++...++.+............
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~---~~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~a~d~~~L~~a 422 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ---HAPRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHEADSAESLLDL 422 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh---cCCCceEEEecccccccHH---HHHHHhhcccCceeEecCcHHHHHHH
Confidence 35678999999999996553222222222 0122344443 2343333 33445555566665544443444444
Q ss_pred HHHhhCCCCEEEECchHH
Q psy18032 151 FARLHASPDIVVATPGRF 168 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~rl 168 (333)
.+.+.+.--|||=||++.
T Consensus 423 L~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 423 LERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHhccCCEEEecCCCcc
Confidence 444544455778899875
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.023 Score=58.69 Aligned_cols=100 Identities=21% Similarity=0.233 Sum_probs=77.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEE
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 139 (333)
|.++|.-.--.+ .+.-++.+.||=|||+++.+|+.-.... |.-+-|++..-.||.-=.+++..+..++|+.+.
T Consensus 170 ~yDVQliGgivL--h~G~IAEM~TGEGKTLvAtlp~yLnAL~-----GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg 242 (1112)
T PRK12901 170 HYDVQLIGGVVL--HQGKIAEMATGEGKTLVATLPVYLNALT-----GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVD 242 (1112)
T ss_pred ccchHHhhhhhh--cCCceeeecCCCCchhHHHHHHHHHHHc-----CCCcEEEEechhhhhccHHHHHHHHHHhCCcee
Confidence 666776544344 3557899999999999999999887776 455788899999999999999999999999999
Q ss_pred EEEC-CcchHHHHHHhhCCCCEEEECchHH
Q psy18032 140 CLLG-GDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 140 ~~~g-~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
++.. +.+..+ +.-.-.|+|.++|..-+
T Consensus 243 ~i~~~~~~~~~--rr~aY~~DItYgTn~Ef 270 (1112)
T PRK12901 243 CIDKHQPNSEA--RRKAYNADITYGTNNEF 270 (1112)
T ss_pred ecCCCCCCHHH--HHHhCCCcceecCCCcc
Confidence 8876 334433 22334689999998654
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.03 Score=52.63 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=72.8
Q ss_pred CCEEEECchHHHHHHHhccccccCchhhHHHHHHH-hhccccceeeeecCCChHHHHHhhh-cCCcEEEeCCCceEEEEE
Q psy18032 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKEL-GKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 158 ~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l-~~~~~~~~~~l~~sAT~~~~v~~l~-~~~~i~~~t~~~i~~~~~ 235 (333)
..-+|.||.|-+....... +..+ .++.+..++++.++.++.+.+..+. +++.|+++||||+.+++.
T Consensus 80 vgalIIsPTRELa~QI~~V------------~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 80 VGALIISPTRELARQIREV------------AQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred eeEEEecCcHHHHHHHHHH------------HHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHh
Confidence 4678999999887765443 2222 2346688999999999999999887 678999999999988886
Q ss_pred ecchhhh--hHHHHhh---------cchhhHHHHHHHhcCC-Ccccccc-chHHH
Q psy18032 236 EMELKLS--SIQLSLT---------DFKQDTSRIALDLVGD-STEMIHK-QRQSV 277 (333)
Q Consensus 236 ~~~~k~~--~l~lif~---------~~~~~~~~l~~~L~g~-~~~~lh~-~r~~l 277 (333)
....+++ .+.+++. .+.+....|-..|... +..++.+ +.+.+
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v 202 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEV 202 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHH
Confidence 5433443 3333333 3566666676666533 3444444 55555
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.13 Score=51.31 Aligned_cols=121 Identities=17% Similarity=0.182 Sum_probs=77.5
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.++++|.+.+.-+. +|-|.|..-.-|-|||+ -.++.+..+....+..|| -||++|...|.+= .+.+++++ +
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTl-QtIs~l~yl~~~~~~~GP-fLVi~P~StL~NW-~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTL-QTISLLGYLKGRKGIPGP-FLVIAPKSTLDNW-MNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHH-HHHHHHHHHHHhcCCCCC-eEEEeeHhhHHHH-HHHHHHhC--C
Confidence 57889988766544 47899999999999995 344445544443333454 8999999988663 33455543 6
Q ss_pred CceEEEEECCcchHHHH-H-HhhC-CCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 135 KLQSTCLLGGDSMDNQF-A-RLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~-~-~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
++.+.+.+|+....... + .+.. ..+|+|+|-+..+.- +..+.--..+|+|
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylv 294 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLV 294 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEE
Confidence 78899999887433222 2 2222 589999998877643 2222233445555
|
|
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.07 Score=56.14 Aligned_cols=106 Identities=20% Similarity=0.134 Sum_probs=73.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
+..+++=-+|||||+.-+..+-..+.. ...+.+++|+=.++|-.|..+.+..++....... ...+.++-.+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 358999999999998777665444443 4468999999999999999999999865433222 344555555555
Q ss_pred hCC-CCEEEECchHHHHHHHhc-cccccCchhhHH
Q psy18032 155 HAS-PDIVVATPGRFLHIVVEM-ELKLSSIQYTFK 187 (333)
Q Consensus 155 ~~~-~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~ 187 (333)
.++ -.|+|+|-..+-...... .....+-.++|+
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI 381 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVI 381 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEE
Confidence 544 489999999998777664 222344444443
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.054 Score=50.91 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=50.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
..++++||||+|||.+..--+....... ..++..+.+++ +.|.-+.++ ++.++...++.+..............
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~-~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~~~~~~l~~~L~ 250 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINS-DDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAIESFKDLKEEIT 250 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhh-ccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEeeCcHHHHHHHHH
Confidence 4589999999999966542222221111 11233444444 333444433 66666667777655443333333334
Q ss_pred HhhCCCCEEEECchHHH
Q psy18032 153 RLHASPDIVVATPGRFL 169 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll 169 (333)
.+.+.-.|+|=||++..
T Consensus 251 ~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HhCCCCEEEEcCCCCCc
Confidence 44433557788999875
|
|
| >KOG0744|consensus | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.071 Score=48.15 Aligned_cols=110 Identities=15% Similarity=0.207 Sum_probs=67.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE------------EcccHHHHHHHHHHHHHHhccCCceEEEEEC
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI------------LSPTRELALQTFKFVKELGKFTKLQSTCLLG 143 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li------------l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g 143 (333)
=+++.||+|+|||. .+=++.+++.-..+.+-+.+.+ .+-+-.|+.++++.+.++.+..|.-+.++..
T Consensus 179 liLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLID 257 (423)
T KOG0744|consen 179 LILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLID 257 (423)
T ss_pred EEEEeCCCCCChhH-HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeH
Confidence 48999999999993 3334445543222222222222 2345568889999999998887776666654
Q ss_pred Cc---------------ch---------HHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 144 GD---------------SM---------DNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 144 ~~---------------~~---------~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
.. +. -.|...++..++++|-|...|.+-+....++-.++.+.|
T Consensus 258 EVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yV 324 (423)
T KOG0744|consen 258 EVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYV 324 (423)
T ss_pred HHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhheeec
Confidence 31 11 123445566788888887777777666555555544444
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.028 Score=53.39 Aligned_cols=81 Identities=35% Similarity=0.526 Sum_probs=63.4
Q ss_pred CCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEec
Q psy18032 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 237 (333)
Q Consensus 158 ~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~ 237 (333)
.++||.+|.|-+....... ...|.++.........++-.+..+-..|...|+|+++||||+.+|+.+.
T Consensus 253 TRVLVL~PTRELaiQv~sV------------~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs 320 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSV------------TKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS 320 (691)
T ss_pred eeEEEEeccHHHHHHHHHH------------HHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC
Confidence 6899999999998887665 6777777776666677787888888888999999999999999999765
Q ss_pred -chhhhhHHHHhhc
Q psy18032 238 -ELKLSSIQLSLTD 250 (333)
Q Consensus 238 -~~k~~~l~lif~~ 250 (333)
...++.+.+++.+
T Consensus 321 ~sf~ldsiEVLvlD 334 (691)
T KOG0338|consen 321 PSFNLDSIEVLVLD 334 (691)
T ss_pred CCccccceeEEEec
Confidence 3455555444444
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.074 Score=55.75 Aligned_cols=65 Identities=25% Similarity=0.208 Sum_probs=49.4
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+.|+. +++-|.+++..++.+.+ ++++|+.|+|||.. +-++...+.. .|.+++.++||-.-+..+.
T Consensus 342 ~~g~~-Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~ 407 (988)
T PRK13889 342 ARGLV-LSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLE 407 (988)
T ss_pred hcCCC-CCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHh
Confidence 34655 89999999999999776 78999999999974 3333343333 3678999999988776654
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.067 Score=49.93 Aligned_cols=89 Identities=18% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCcEEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
++-+.+.||||-|||.... |++.-.... .+..-+||-.-|--.. -+++++.+++.+|+.+.++.......+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~---~~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK---KKKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc---cCcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 6679999999999996544 333222122 1222444444333322 235577777789999999998888888888
Q ss_pred HhhCCCCEEEECchH
Q psy18032 153 RLHASPDIVVATPGR 167 (333)
Q Consensus 153 ~l~~~~~IlI~TP~r 167 (333)
.+.+.-.|||-|-||
T Consensus 278 ~l~~~d~ILVDTaGr 292 (407)
T COG1419 278 ALRDCDVILVDTAGR 292 (407)
T ss_pred HhhcCCEEEEeCCCC
Confidence 888777788999875
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.007 Score=57.83 Aligned_cols=36 Identities=44% Similarity=0.629 Sum_probs=32.5
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
..+|.++++.++..++.||+|||++|++|+++++..
T Consensus 37 ~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~ 72 (423)
T PRK04837 37 LALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLS 72 (423)
T ss_pred HHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHh
Confidence 467888899999999999999999999999998864
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.041 Score=48.10 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=55.1
Q ss_pred cccCCCHHHHHHHHhCCCCC----------CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 40 QSFGLGFEVLKGVLKRGYKI----------PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 40 ~~~~l~~~l~~~l~~~g~~~----------~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
..++|++.+-+.-.+-||.. +||.. +..--+..|.-+++.|++|+|||...+--+.+.... |..
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~-~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~-----Ge~ 94 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAE-ELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS-----GRT 94 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCCHH-HhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc-----CCe
Confidence 45678888888777878863 45522 233344556679999999999997555444444332 456
Q ss_pred EEEEcccHHHHHHHHHHHHHH
Q psy18032 110 ALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~ 130 (333)
++|++ ..+-..|+.+.+..+
T Consensus 95 vlyfS-lEes~~~i~~R~~s~ 114 (237)
T PRK05973 95 GVFFT-LEYTEQDVRDRLRAL 114 (237)
T ss_pred EEEEE-EeCCHHHHHHHHHHc
Confidence 77775 444467888888775
|
|
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.043 Score=55.63 Aligned_cols=69 Identities=16% Similarity=0.112 Sum_probs=53.9
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
+++-|.+++.. ...+++|.|..|||||.+..--+...+... .....+.|+|+.|+.-+.++.+.+.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~-~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNC-GYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 68899998864 346899999999999987776666666431 1123579999999999999999998754
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.077 Score=48.23 Aligned_cols=67 Identities=30% Similarity=0.468 Sum_probs=42.7
Q ss_pred HHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
++.+.+.|. +++.|.+.+.. +..+++++++|+||||||. ++-.++..+... ....+.+++--+.|+.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTT-LANALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHHhhcc--CCCceEEEECCchhhc
Confidence 344455554 45556666665 5556799999999999995 444555555431 1134678888777763
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.12 Score=52.28 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=39.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++.||.|||||.+..-++-+.+.. ...++|+|+..+.|+.+..+.++.
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~ 100 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKK 100 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhh
Confidence 7899999999998765554444332 356899999999999999999986
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.038 Score=46.20 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=27.2
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
-+++++++.||+|+|||..+..- ...+.. ++..+++ ++..+|..++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai-~~~~~~----~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAI-ANEAIR----KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHH-HHHHHH----TT--EEE-EEHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHH-HHHhcc----CCcceeE-eecCceeccc
Confidence 35789999999999999654433 333333 2545555 5666676654
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.083 Score=53.96 Aligned_cols=68 Identities=16% Similarity=0.138 Sum_probs=49.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..++. +++-|.+++..+...+-++++|+.|||||... -.++..+... .....+++++||-.-|..+.+
T Consensus 319 ~~~~~-l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 319 KLRKG-LSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred hcCCC-CCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHH
Confidence 34654 89999999999998889999999999999633 2333333331 011568889999887776544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.05 Score=55.65 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+... +-...+.|+++.|+.-|.++.+++..+..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998653 45899999999999987666655555431 11234799999999999999999988643
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.085 Score=49.48 Aligned_cols=87 Identities=14% Similarity=0.203 Sum_probs=47.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+.+.++||||+|||.....-+.. +.. .+.++.++.. -|.-+.++ ++.++...++.+..........+...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~----~GkkVglI~aDt~RiaAvEQ---Lk~yae~lgipv~v~~d~~~L~~aL~ 313 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQ---LQDYVKTIGFEVIAVRDEAAMTRALT 313 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH----cCCcEEEEecCCcchHHHHH---HHHHhhhcCCcEEecCCHHHHHHHHH
Confidence 45889999999999655433332 222 2444555443 33323333 44444456776665443333433344
Q ss_pred HhhC--C-CCEEEECchHHH
Q psy18032 153 RLHA--S-PDIVVATPGRFL 169 (333)
Q Consensus 153 ~l~~--~-~~IlI~TP~rll 169 (333)
.+.. + --|+|-||++..
T Consensus 314 ~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 314 YFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHhccCCCEEEEeCccccC
Confidence 4432 2 347789999855
|
|
| >TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.057 Score=58.48 Aligned_cols=66 Identities=26% Similarity=0.280 Sum_probs=54.6
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-.+.++++=|++-|.++.++++.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHH
Confidence 6899999997 4688999999999999998887777776653 1123699999999999998888876
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. |
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.018 Score=54.68 Aligned_cols=123 Identities=26% Similarity=0.311 Sum_probs=79.1
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
++|--||+.|.|-+....... ...+.+..+.+.-+++.++...++...|..+++++++||+|+.+++.
T Consensus 295 ~gPi~vilvPTrela~Qi~~e------------aKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk 362 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSE------------AKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK 362 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHH------------HHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH
Confidence 368788999999887765443 56666667788999999999999999999999999999999877664
Q ss_pred ecchhhhhHHHHhh---------cchhhHHHHHHHhc-CCCcccccc----chHH-HhhhCCCCcccccc
Q psy18032 236 EMELKLSSIQLSLT---------DFKQDTSRIALDLV-GDSTEMIHK----QRQS-VRKWDPAKKKYVQV 290 (333)
Q Consensus 236 ~~~~k~~~l~lif~---------~~~~~~~~l~~~L~-g~~~~~lh~----~r~~-l~~f~~g~~~vLva 290 (333)
-+...+.+..+++. -+..++..|+...+ ...+.++.. +-+. .+.|..+.++++..
T Consensus 363 mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg 432 (731)
T KOG0339|consen 363 MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQG 432 (731)
T ss_pred hhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEe
Confidence 33323333222222 24444555555444 222333333 1122 25666666666654
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.011 Score=57.03 Aligned_cols=37 Identities=43% Similarity=0.720 Sum_probs=31.6
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.+|.++++.++.-++.||+|||.+|++|++++++...
T Consensus 34 ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~ 70 (460)
T PRK11776 34 SLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR 70 (460)
T ss_pred HHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc
Confidence 4566677788899999999999999999999997654
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.11 Score=52.82 Aligned_cols=89 Identities=13% Similarity=0.127 Sum_probs=47.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCC-ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSG-VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
=+.++||||+|||.+...-+...... .+ .++.++.--..-+ --.++++.+++..++.+..........+..+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~----~G~kkV~lit~Dt~Ri-gA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~ 261 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAR----EGADQLALLTTDSFRI-GALEQLRIYGRILGVPVHAVKDAADLRFALAAL 261 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHH----cCCCeEEEecCcccch-HHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh
Confidence 37899999999986555333222111 12 2444444322221 013445666666777665444322333333444
Q ss_pred hCCCCEEEECchHHH
Q psy18032 155 HASPDIVVATPGRFL 169 (333)
Q Consensus 155 ~~~~~IlI~TP~rll 169 (333)
.+.-.|||=||+|..
T Consensus 262 ~~~D~VLIDTAGRs~ 276 (767)
T PRK14723 262 GDKHLVLIDTVGMSQ 276 (767)
T ss_pred cCCCEEEEeCCCCCc
Confidence 444457899999653
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.046 Score=49.80 Aligned_cols=68 Identities=24% Similarity=0.271 Sum_probs=48.9
Q ss_pred CCCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|...++-|...+..+..++ |++++|.||||||. +++.+........ ++|.+=-|.||--++-++.+-
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTT-----lLNal~~~i~~~e-RvItiEDtaELql~~ph~vrL 222 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTT-----LLNALSGFIDSDE-RVITIEDTAELQLAHPHVVRL 222 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHH-----HHHHHHhcCCCcc-cEEEEeehhhhccCCCceEEE
Confidence 57788999999999877765 99999999999995 2333322222223 889988888886665554443
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.013 Score=55.56 Aligned_cols=37 Identities=43% Similarity=0.611 Sum_probs=33.6
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.+||.+.++.++--+|.||+|||.||++|+++++-++
T Consensus 103 ~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~ 139 (482)
T KOG0335|consen 103 YSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDE 139 (482)
T ss_pred eccceeecCCceEEEccCCCcchHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999987554
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.04 Score=50.98 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=31.9
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
.++..+++++++||||||||. ++-+++..+.. ..+.+.+-.+.||.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTT-ll~aLl~~i~~-----~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTT-MSKTLISAIPP-----QERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHH-HHHHHHcccCC-----CCCEEEECCCcccc
Confidence 345568899999999999995 44445554433 33567777777764
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.067 Score=54.80 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=55.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+... .-...+.|+|+-|+.-|.++.+++..+..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998643 45899999999999987766655555431 11234799999999999999999988643
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.0098 Score=55.28 Aligned_cols=46 Identities=37% Similarity=0.520 Sum_probs=39.7
Q ss_pred CCcccccccc---CCcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 283 g~~~vLvaTd---~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+.+-+.-|| ..||.++-+-++.-.+.||||||.||.+|++|-.|+
T Consensus 18 ~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 18 DELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred hhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHH
Confidence 3456667777 789999998899999999999999999999987765
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.13 Score=47.37 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=29.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+.++++.||||+|||.... ++...+.. ++..+++ .+..+|..+...
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y-~t~~~l~~~l~~ 228 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIY-RTADELIEILRE 228 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEE-EEHHHHHHHHHH
Confidence 5789999999999996333 34444443 2445554 555666665543
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.08 Score=49.57 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=46.7
Q ss_pred CcHHHHhHHHHH------hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH--HHHHHH
Q psy18032 60 PTPIQRKTIPLV------LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT--FKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i------~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~--~~~~~~ 129 (333)
+++-|++++..+ ..+.++++.|+-|+|||. ++-.+..... ..+..+++++||-.=|..+ -..++.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~--l~~~i~~~~~---~~~~~~~~~a~tg~AA~~i~~G~T~hs 74 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSF--LIKAIIDYLR---SRGKKVLVTAPTGIAAFNIPGGRTIHS 74 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhH--HHHHHHHHhc---cccceEEEecchHHHHHhccCCcchHH
Confidence 577899998888 678899999999999995 3333333333 2356799999998877766 344444
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.18 Score=51.68 Aligned_cols=76 Identities=16% Similarity=0.213 Sum_probs=51.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++..+...-..++. +++-|.+++..++.+ +-++++|+.|+|||...- ++...+.. .+..+++++||-.-+..
T Consensus 338 ~~~~~~~~~l~~~~~-Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHYR-LSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccCC-CCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 444443333334444 899999999999885 458999999999995422 23333332 36789999999887766
Q ss_pred HHH
Q psy18032 123 TFK 125 (333)
Q Consensus 123 ~~~ 125 (333)
+.+
T Consensus 412 L~~ 414 (744)
T TIGR02768 412 LQA 414 (744)
T ss_pred HHh
Confidence 643
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.092 Score=50.69 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=49.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc-eEEEEc-cc-HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV-RALILS-PT-RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~-~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (333)
.-+.++||||+|||.+...-+-..... .|. ++.++. =+ +.=+ .+.++.+++..++.+.............
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~~~----~G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~~~~~Dl~~aL 329 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCVMR----HGASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAVKDAADLRLAL 329 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHh----cCCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeeccCCchhHHHHH
Confidence 448899999999996555333222122 121 333332 22 2223 3445555555676665554444444444
Q ss_pred HHhhCCCCEEEECchHHH
Q psy18032 152 ARLHASPDIVVATPGRFL 169 (333)
Q Consensus 152 ~~l~~~~~IlI~TP~rll 169 (333)
..+.+.-.++|-|+++..
T Consensus 330 ~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 330 SELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HhccCCCeEEeCCCCcCh
Confidence 555555678999999654
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.18 Score=47.12 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=46.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (333)
++-++++||+|+|||....--+.. +.. .+.++.++.- -|.=+ .++++.++...++.+..........+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~~~dp~dL~~al 277 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGA---VEQFQGYADKLDVELIVATSPAELEEAV 277 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEecCCHHHHHHHH
Confidence 456899999999999654433332 222 1344555443 23222 2345556666676655332222222222
Q ss_pred HHhh--CC-CCEEEECchHHH
Q psy18032 152 ARLH--AS-PDIVVATPGRFL 169 (333)
Q Consensus 152 ~~l~--~~-~~IlI~TP~rll 169 (333)
..+. ++ -.|+|=||++..
T Consensus 278 ~~l~~~~~~D~VLIDTAGr~~ 298 (407)
T PRK12726 278 QYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred HHHHhcCCCCEEEEECCCCCc
Confidence 3333 23 458899999854
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.14 Score=50.85 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=48.7
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+.|..++..++..+-.+++|+.|||||... ++..+..... ...+.++++.+||-.=+..+.+.+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 3789999999999999999999999999643 2333332221 11135799999999888877776654
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.24 Score=43.64 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=29.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.++++.||+|+|||.... ++.+.+.. ++..+ +.++..+|..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v-~~i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSV-IVVTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCe-EEEEHHHHHHHHHHH
Confidence 579999999999995333 33344443 24334 555667777766543
|
|
| >KOG1133|consensus | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.049 Score=53.66 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=37.3
Q ss_pred CCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhh
Q psy18032 57 YKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTH 102 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~ 102 (333)
|+ |+.||.+.+..+. .|+=.|..+|||+|||++.+-+++..+...
T Consensus 14 y~-PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~~ 62 (821)
T KOG1133|consen 14 YT-PYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRDF 62 (821)
T ss_pred CC-chhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHHh
Confidence 44 8999988776654 588899999999999999998888887653
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.16 Score=50.68 Aligned_cols=66 Identities=23% Similarity=0.261 Sum_probs=49.4
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++|..|+...+..+-.++.|++|+|||... ++..+..... ....++++.+||..=|..+.+.+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHh
Confidence 5899999999999889999999999999643 2333322211 1235788999999988888776654
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.74 Score=43.96 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=45.6
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH---
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ--- 150 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--- 150 (333)
-+++++++|+|||....--+...... .+.+++++.- .|.-+.++ ++.++...++.+.....+.+..+.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~----~g~kV~lV~~D~~R~~a~~Q---L~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK----QGKKVLLVACDLYRPAAIEQ---LKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh----CCCeEEEEeccccchHHHHH---HHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 38899999999997654333322111 2345555543 34444443 333444466665544433333211
Q ss_pred -HHHh-hCCC-CEEEECchHH
Q psy18032 151 -FARL-HASP-DIVVATPGRF 168 (333)
Q Consensus 151 -~~~l-~~~~-~IlI~TP~rl 168 (333)
.+.. .+++ .|+|=||+++
T Consensus 174 al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCcc
Confidence 1222 3355 4889999976
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.12 Score=50.44 Aligned_cols=94 Identities=23% Similarity=0.186 Sum_probs=60.2
Q ss_pred cccCCCHHHH-HHHHhCCCCCCcH----HHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEE
Q psy18032 40 QSFGLGFEVL-KGVLKRGYKIPTP----IQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRAL 111 (333)
Q Consensus 40 ~~~~l~~~l~-~~l~~~g~~~~~~----~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~l 111 (333)
.+.+..++++ ..|++.-=..++. +|.+==+.+..-+ =++|+|..|||||.+++--+.-.+..... -.+..+|
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vl 264 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVL 264 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceE
Confidence 4456666654 4565542222322 4444434444434 49999999999998877544444443221 1133499
Q ss_pred EEcccHHHHHHHHHHHHHHhcc
Q psy18032 112 ILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~ 133 (333)
|+.|.+-++.-+.+++-.++..
T Consensus 265 vl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred EEcCcHHHHHHHHHhchhhccC
Confidence 9999999999999999998753
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.067 Score=46.87 Aligned_cols=52 Identities=17% Similarity=0.232 Sum_probs=37.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|..+++.||+|+|||...+--+...+.. +-.+++++ +.+-..++.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~-----ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-----CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 5779999999999997555444444433 55677877 5667788888887754
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.12 Score=47.62 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=29.8
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+..+++++++|+||||||. ++-+++..+.. .-+.+.+=-+.||.
T Consensus 157 v~~~~nili~G~tgSGKTT-ll~aL~~~ip~-----~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTT-FTNAALREIPA-----IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHH-HHHHHHhhCCC-----CCeEEEecCCCccc
Confidence 5568899999999999995 44555555543 33566655555553
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.33 Score=43.47 Aligned_cols=87 Identities=18% Similarity=0.212 Sum_probs=45.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH--
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ-- 150 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 150 (333)
+-+.+++|+|+|||....--+... .. .+.+++++. +.|.-+.++.. .++...++.+.....+.+....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~----~g~~V~li~~D~~r~~a~~ql~---~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK----QGKSVLLAAGDTFRAAAIEQLE---EWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh----cCCEEEEEeCCCCCHHHHHHHH---HHHHhCCeEEEeCCCCCCHHHHHH
Confidence 347788999999996554333322 22 245666665 33444443333 3333345544332222222111
Q ss_pred --HH-HhhCCCC-EEEECchHHH
Q psy18032 151 --FA-RLHASPD-IVVATPGRFL 169 (333)
Q Consensus 151 --~~-~l~~~~~-IlI~TP~rll 169 (333)
.. ...++++ |+|=||+++.
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCc
Confidence 11 1234566 8899999875
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.47 Score=41.72 Aligned_cols=45 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
..+++.|++|+|||.... ++...+.. .+..++++ +..+|...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~----~g~~v~~i-t~~~l~~~l~~ 144 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL----RGKSVLII-TVADIMSAMKD 144 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh----cCCeEEEE-EHHHHHHHHHH
Confidence 479999999999996444 34444443 24445544 55556554433
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.097 Score=48.98 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.4
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+..++++||||||||. .+-.++..+..
T Consensus 149 ~GlilI~G~TGSGKTT-~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKST-LAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 3468999999999995 34555665543
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.32 Score=49.00 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=57.8
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHHH-HHhccCCceE
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFVK-ELGKFTKLQS 138 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~~ 138 (333)
++++++|...-=+++||.||||||. ++| +.++... ...++..=|--|.|--|..+.++.. +++. .+-.|
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eV 336 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEV 336 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Cccce
Confidence 3445555554459999999999995 444 3333311 1123345566688877777765554 4444 34344
Q ss_pred EEE--ECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 139 TCL--LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 139 ~~~--~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
... +.|.- .....|.+.|-|-|+.-+.+.
T Consensus 337 sYqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D 367 (1172)
T KOG0926|consen 337 SYQIRFDGTI--------GEDTSIKFMTDGVLLREIEND 367 (1172)
T ss_pred eEEEEecccc--------CCCceeEEecchHHHHHHHHh
Confidence 332 22221 124679999999999777654
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.38 Score=42.94 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=29.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
.+.++++.|++|+|||.... ++...+... .+..++++ +..++..++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~-~~~~l~~~l~~ 163 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYF-PFVEGFGDLKD 163 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEE-EHHHHHHHHHH
Confidence 35789999999999995332 344444431 14455554 45566555543
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.024 Score=49.19 Aligned_cols=77 Identities=26% Similarity=0.414 Sum_probs=54.1
Q ss_pred hCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcccc-ceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEE
Q psy18032 155 HASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKL-QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233 (333)
Q Consensus 155 ~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~-~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~ 233 (333)
...+.++|....|-+.....+. ...+.+++|. +..+.+++..+...-+.+++.|+|+++||||+..+
T Consensus 108 ~g~vsvlvmchtrelafqi~~e------------y~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilAL 175 (387)
T KOG0329|consen 108 DGQVSVLVMCHTRELAFQISKE------------YERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILAL 175 (387)
T ss_pred CCeEEEEEEeccHHHHHHHHHH------------HHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHH
Confidence 3357788888888887776665 6777778875 44555555566677777888999999999987666
Q ss_pred EEecchhhhh
Q psy18032 234 VVEMELKLSS 243 (333)
Q Consensus 234 ~~~~~~k~~~ 243 (333)
+.+...+++.
T Consensus 176 vr~k~l~lk~ 185 (387)
T KOG0329|consen 176 VRNRSLNLKN 185 (387)
T ss_pred HHhccCchhh
Confidence 5554444433
|
|
| >cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.028 Score=52.99 Aligned_cols=47 Identities=30% Similarity=0.318 Sum_probs=38.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++++||||||||.++++|-+... +..++|.-|--|+........+.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------~~s~vv~D~Kge~~~~t~~~r~~ 47 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------PGSVVVLDPKGENFELTSEHRRA 47 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------CCCEEEEccchhHHHHHHHHHHH
Confidence 478999999999999998876532 34699999999999877766665
|
These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence. |
| >PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.045 Score=53.07 Aligned_cols=49 Identities=33% Similarity=0.441 Sum_probs=39.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++.||||||||..+++|.+-. . ..-+||.-|--||.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~-----~~s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y-----PGSMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c-----cCCEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997743 2 226889999999988887777663
|
These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.11 Score=52.52 Aligned_cols=89 Identities=18% Similarity=0.270 Sum_probs=51.2
Q ss_pred CcEEEECCCCcHHHHHHHHHHHH--HhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc------cCCceEEEEECCcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLE--KLKTHAATSGVRALILSPTRELALQTFKFVKELGK------FTKLQSTCLLGGDS 146 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~--~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~------~~~~~~~~~~g~~~ 146 (333)
-|+=|.+.||+|||.||+=-+.. +... -.+-||+|||.+.-.-++...+.... +-+.+.-.+.-+..
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-----~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~ 149 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-----LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDED 149 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-----ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechH
Confidence 36889999999999999865543 3222 35789999999876554443333221 12334333333322
Q ss_pred hHHHHHHhhCCCCEEEECchHH
Q psy18032 147 MDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 147 ~~~~~~~l~~~~~IlI~TP~rl 168 (333)
.........+.|.+++.|-..+
T Consensus 150 ~~~~~~~~~~~~~vLl~~~~Af 171 (985)
T COG3587 150 IEKFKFKSNNKPCVLLIFVSAF 171 (985)
T ss_pred HHHHhhccCCCceEEEEehhhh
Confidence 2222222334577777775433
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.12 Score=51.26 Aligned_cols=28 Identities=18% Similarity=0.360 Sum_probs=20.8
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++++++||||||||. ++-+++..+..
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~~ 283 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYAD 283 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHhh
Confidence 46789999999999996 44555555543
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.026 Score=54.55 Aligned_cols=35 Identities=49% Similarity=0.707 Sum_probs=30.3
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+|.++++.++.-++.||+|||++|++|+++.+..
T Consensus 31 ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~ 65 (456)
T PRK10590 31 AIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLIT 65 (456)
T ss_pred HHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhh
Confidence 45667777888899999999999999999999865
|
|
| >TIGR01073 pcrA ATP-dependent DNA helicase PcrA | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.13 Score=52.74 Aligned_cols=71 Identities=21% Similarity=0.200 Sum_probs=55.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++... ...++|.|..|||||.+..--+...+.... -..-+.|+++-|+.-|.++.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 45899999998753 457999999999999877766666654321 112479999999999999999998764
|
Designed to identify pcrA members of the uvrD/rep subfamily. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.1 Score=44.31 Aligned_cols=85 Identities=15% Similarity=0.159 Sum_probs=43.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
++++||||+|||....=-+...... +.++.+++- .|.=+.+ +++.+++.+++.+.......+..+ .
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~-----~~~v~lis~D~~R~ga~e---QL~~~a~~l~vp~~~~~~~~~~~~~~~~~ 75 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK-----GKKVALISADTYRIGAVE---QLKTYAEILGVPFYVARTESDPAEIAREA 75 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT-----T--EEEEEESTSSTHHHH---HHHHHHHHHTEEEEESSTTSCHHHHHHHH
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc-----cccceeecCCCCCccHHH---HHHHHHHHhccccchhhcchhhHHHHHHH
Confidence 6789999999996554222222222 233444442 3433443 455555567777665544433222 1
Q ss_pred HHHhh-CC-CCEEEECchHHH
Q psy18032 151 FARLH-AS-PDIVVATPGRFL 169 (333)
Q Consensus 151 ~~~l~-~~-~~IlI~TP~rll 169 (333)
.+... ++ --|+|=||++-.
T Consensus 76 l~~~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 76 LEKFRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHHHHTTSSEEEEEE-SSSS
T ss_pred HHHHhhcCCCEEEEecCCcch
Confidence 22222 23 347789998754
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.096 Score=43.67 Aligned_cols=49 Identities=22% Similarity=0.279 Sum_probs=32.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
+++.||+|+|||...+--+...+. .+..+++++ +.+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 689999999999755433333332 255677775 4566777777777653
|
A related protein is found in archaea. |
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.067 Score=49.78 Aligned_cols=82 Identities=44% Similarity=0.696 Sum_probs=68.9
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEe
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 236 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~ 236 (333)
+.+-+|.+|.+-+++..-+. ..++.+....+..+++++..+.++...+..+|+++++||+++.|...+
T Consensus 90 g~RalilsptreLa~qtlkv------------vkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 90 GLRALILSPTRELALQTLKV------------VKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred ccceeeccCcHHHHHHHHHH------------HHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehh
Confidence 46889999999888877554 788888888888888999999999999999999999999999999988
Q ss_pred cchhhhhHHHHhhc
Q psy18032 237 MELKLSSIQLSLTD 250 (333)
Q Consensus 237 ~~~k~~~l~lif~~ 250 (333)
...+++.+.+|+.+
T Consensus 158 m~l~l~sveyVVfd 171 (529)
T KOG0337|consen 158 MTLTLSSVEYVVFD 171 (529)
T ss_pred eeccccceeeeeeh
Confidence 77777766555444
|
|
| >KOG1805|consensus | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.41 Score=49.23 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.+.|.+.+. -+..++..|.+|+-.++..+| .++.|=+|+|||......+-.-+. .|.++|+.+-|..=+.
T Consensus 657 ~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----~gkkVLLtsyThsAVD 727 (1100)
T KOG1805|consen 657 VLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----LGKKVLLTSYTHSAVD 727 (1100)
T ss_pred ccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----cCCeEEEEehhhHHHH
Confidence 345544442 234688899999999999998 889999999999654433322222 3668999999988777
Q ss_pred HHHHHHHHH
Q psy18032 122 QTFKFVKEL 130 (333)
Q Consensus 122 q~~~~~~~~ 130 (333)
.+.-.++.+
T Consensus 728 NILiKL~~~ 736 (1100)
T KOG1805|consen 728 NILIKLKGF 736 (1100)
T ss_pred HHHHHHhcc
Confidence 777777763
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.24 Score=47.81 Aligned_cols=39 Identities=31% Similarity=0.399 Sum_probs=25.6
Q ss_pred HHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 62 PIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 62 ~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+.|.+.+..++... -++++||||||||... ..++..+..
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 44555555555433 4999999999999644 455666543
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.085 Score=50.52 Aligned_cols=40 Identities=33% Similarity=0.464 Sum_probs=30.6
Q ss_pred cHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 61 TPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
++.|...+..+++... +++.||||||||. -+..+++.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTT-TLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTT-TLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHHHHHhcC
Confidence 5677777777777655 8999999999995 45667777665
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.098 Score=46.33 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=28.2
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
+-.+.+++++||+|+|||....--....... |..+++. +..+++.++
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~al~~~a~~~-----g~~v~f~-t~~~l~~~l 141 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAIGLGIRACQA-----GHRVLFA-TAAQWVARL 141 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHHHHHHHHHHC-----CCchhhh-hHHHHHHHH
Confidence 3456799999999999996554333322222 4455553 344455554
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.14 Score=48.53 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=51.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+.++||||+|||.....-+-..+..... ..-+++...+.-. --.+++..+++..|+.+...............
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~--~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v~~~~dl~~al~~ 266 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGA--DKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE 266 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCC--CeEEEEecCCcch--hHHHHHHHHHHHcCCceecCCCHHHHHHHHHH
Confidence 3448999999999996554322222222111 1234555555332 22333555556667777665555544444455
Q ss_pred hhCCCCEEEECchHHH
Q psy18032 154 LHASPDIVVATPGRFL 169 (333)
Q Consensus 154 l~~~~~IlI~TP~rll 169 (333)
+.+.-.++|-|+++..
T Consensus 267 l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 267 LRGKHMVLIDTVGMSQ 282 (420)
T ss_pred hcCCCEEEecCCCCCc
Confidence 5555678899987754
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.76 Score=41.06 Aligned_cols=87 Identities=14% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc-c-H-HHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP-T-R-ELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P-t-~-~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
+..+.+++|+|+|||..+..-+... .. .+..+.++.- + + ..+.| ++.++...++.+..........+.
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~----~~~~v~~i~~D~~ri~~~~q----l~~~~~~~~~~~~~~~~~~~l~~~ 145 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG----KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAVRDEAAMTRA 145 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH----cCCeEEEEecCCCCHHHHHH----HHHHhhhcCceEEecCCHHHHHHH
Confidence 3568999999999997665443332 22 1334444443 2 2 23333 444444456666544333333333
Q ss_pred HHHhhC--CC-CEEEECchHHH
Q psy18032 151 FARLHA--SP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~~~l~~--~~-~IlI~TP~rll 169 (333)
.+.+.+ ++ .|+|=||++..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~~ 167 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKNY 167 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCCc
Confidence 333432 33 47788999863
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.024 Score=54.01 Aligned_cols=35 Identities=46% Similarity=0.722 Sum_probs=31.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
..||.+++..++.+++.||||||.||++|+|..|-
T Consensus 274 ~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~Is 308 (673)
T KOG0333|consen 274 QAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWIS 308 (673)
T ss_pred hhccchhccCCeeeEEeccCCccccchhhHHHHHH
Confidence 57888888889999999999999999999987664
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.22 Score=44.46 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=34.6
Q ss_pred cHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 61 TPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 61 ~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+.|..++.. +-.+++++++||+|+|||..... +...+.. .|..+++ .+..+|+.++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~----~g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE----NGWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH----cCCceee-eeHHHHHHHHH
Confidence 4455555532 34678999999999999954432 2233332 2444544 45566776653
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.37 Score=45.85 Aligned_cols=84 Identities=18% Similarity=0.267 Sum_probs=46.5
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcch----HH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSM----DN 149 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~----~~ 149 (333)
++++|++|+|||.... ++.. +.. .+.++++++- .|.-+.++ ++.++...++.+....++.+. .+
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~--l~~----~G~kV~lV~~D~~R~aA~eQ---Lk~~a~~~~vp~~~~~~~~dp~~i~~~ 173 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYY--YQR----KGFKPCLVCADTFRAGAFDQ---LKQNATKARIPFYGSYTESDPVKIASE 173 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHH--HHH----CCCCEEEEcCcccchhHHHH---HHHHhhccCCeEEeecCCCCHHHHHHH
Confidence 7899999999985443 4432 222 2445666553 35445444 344444567766655544332 12
Q ss_pred HHHHhh-CCCC-EEEECchHHH
Q psy18032 150 QFARLH-ASPD-IVVATPGRFL 169 (333)
Q Consensus 150 ~~~~l~-~~~~-IlI~TP~rll 169 (333)
..+.+. ++++ |+|=||+|+.
T Consensus 174 ~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 174 GVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHhCCCCEEEEECCCCCc
Confidence 223332 2444 7789999864
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.016 Score=51.96 Aligned_cols=40 Identities=35% Similarity=0.623 Sum_probs=36.1
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
.+||..+.+.++.-.+.-|.|||.||++|+|+++|++...
T Consensus 114 esIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~ 153 (459)
T KOG0326|consen 114 ESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNV 153 (459)
T ss_pred cccceeecchhhhhhccCCCCCccceechhhhhcCccccc
Confidence 4799999999999888999999999999999999997653
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.039 Score=55.40 Aligned_cols=36 Identities=50% Similarity=0.790 Sum_probs=31.2
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.+|.++++.++...+.||+|||.+|++|+++.++..
T Consensus 36 ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~ 71 (629)
T PRK11634 36 CIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE 71 (629)
T ss_pred HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc
Confidence 456677778899999999999999999999998764
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=93.70 E-value=0.034 Score=54.05 Aligned_cols=35 Identities=34% Similarity=0.561 Sum_probs=30.4
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.+.++.++...+.||+|||++|++|+++++..
T Consensus 117 ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~ 151 (475)
T PRK01297 117 VLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQ 151 (475)
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 46677778888889999999999999999998864
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.24 Score=44.15 Aligned_cols=45 Identities=31% Similarity=0.403 Sum_probs=29.1
Q ss_pred HHhCCCCCCcHHHHhHHHHHhc-CC-cEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLE-GR-DVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~-g~-d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
|.++|+ .+.|.+.+..++. .+ .+++.|+||||||.. +..++..+.
T Consensus 59 l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 59 LEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 455554 4556666666554 33 489999999999963 344555553
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.12 Score=43.35 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=25.5
Q ss_pred CcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHH
Q psy18032 60 PTPIQRKTIPL-VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 60 ~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.++-|.+.+.. +..|..+++++|||||||...
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 46777777777 555889999999999999643
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.3 Score=46.55 Aligned_cols=47 Identities=17% Similarity=0.065 Sum_probs=32.7
Q ss_pred HHhhcchhhHHHHHHHhc--CCCcccccc---ch---HHHhhhCCCCcccccccc
Q psy18032 246 LSLTDFKQDTSRIALDLV--GDSTEMIHK---QR---QSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 246 lif~~~~~~~~~l~~~L~--g~~~~~lh~---~r---~~l~~f~~g~~~vLvaTd 292 (333)
+||+++=-+--+|-+.|+ +++...+|. .. ++-..|.+|+..+|+-|.
T Consensus 304 LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 304 LIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred EEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 556665555555666665 666677775 22 334889999999999997
|
; GO: 0005634 nucleus |
| >PRK13897 type IV secretion system component VirD4; Provisional | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.081 Score=52.64 Aligned_cols=56 Identities=21% Similarity=0.146 Sum_probs=43.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEE
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCL 141 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~ 141 (333)
+++++.||||||||..+++|-+... +.-+||+=|--|+........++. |.+|.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~----G~~V~vf 214 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQ----GQKVFVW 214 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHC----CCeEEEE
Confidence 4799999999999999999988753 235899999999998888776663 4444444
|
|
| >KOG1132|consensus | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.29 Score=49.71 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=55.0
Q ss_pred hCCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhc--------------------c-----
Q psy18032 54 KRGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHA--------------------A----- 104 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--------------------~----- 104 (333)
++.|+ |++.|...+..++. +.|.++..|||+|||++.+-..|.....-. .
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 34555 89999988877766 478999999999999888766665432210 0
Q ss_pred ------c------CCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 105 ------T------SGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 105 ------~------~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
. .-|+..+-+-|..-..|+.+.+++.+
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 13567777778888888888888754
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=2 Score=39.63 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=43.6
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc--HHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT--RELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
++++|++|+|||....--+ ..+.. .+.+++++... |.=+.++ ++.++...++.+.....+.+... .
T Consensus 143 i~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eq---L~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQ---LEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred EEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHH---HHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 8899999999996444322 22322 24466666543 2333332 33333345666554333332221 1
Q ss_pred HHH-hhCCC-CEEEECchHHH
Q psy18032 151 FAR-LHASP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~~~-l~~~~-~IlI~TP~rll 169 (333)
.+. ...+. -|||=|++++.
T Consensus 215 i~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHhCCCCEEEEECCCccC
Confidence 111 12234 47789999874
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.39 Score=45.97 Aligned_cols=86 Identities=19% Similarity=0.232 Sum_probs=45.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc--HHHHHHHHHHHHHHhccCCceEEEEECCcchHH----
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT--RELALQTFKFVKELGKFTKLQSTCLLGGDSMDN---- 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 149 (333)
-++++|++|+|||....--+. .+.. .+.++++++.- +.-+ .++++.++...++.+...........
T Consensus 97 vI~lvG~~GsGKTTtaakLA~-~L~~----~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLAR-YFKK----KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 488999999999965543332 2332 24455555432 3333 33344444456666543322222211
Q ss_pred HHHHhhCCCCEEEECchHHH
Q psy18032 150 QFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 150 ~~~~l~~~~~IlI~TP~rll 169 (333)
..+.....--|||=||+++.
T Consensus 169 al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 169 GLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHHHhhcCCEEEEECCCccc
Confidence 12222333457889998765
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.17 Score=47.12 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=37.8
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
-++|.|..|||||+..+--+-. +.. ...+..++++++..+|...+.+.+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~-l~~--~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKE-LQN--SEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHH-hhc--cccCCceEEEEecchHHHHHHHHHhh
Confidence 3789999999999765533333 311 12366899999999999988888876
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.2 Score=48.65 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=29.8
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCC-c-EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGR-D-VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~-d-~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
|.++|| .+-|.+.+..++... . ++++||||||||... ..++..+..
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~ 268 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT 268 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC
Confidence 444554 455666777666543 3 789999999999543 445666543
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.056 Score=48.73 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.7
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 479999999999997655
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.24 Score=46.17 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999643 44555554
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.44 Score=46.19 Aligned_cols=99 Identities=12% Similarity=0.176 Sum_probs=76.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR--- 153 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--- 153 (333)
++-+.-.+.||+..-++++.+.+... -.|.+||.+-+.+-|.|.++.+. .+.++.+..++|+.+..+.-+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~ 433 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMER 433 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHH
Confidence 33444567888888888888887763 35679999999999999999887 3578999999999765544333
Q ss_pred hhC-CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 154 LHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 154 l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++. ...++||| +++.++ +++.++++++-
T Consensus 434 FR~g~IwvLicT-----dll~RG-iDf~gvn~VIn 462 (593)
T KOG0344|consen 434 FRIGKIWVLICT-----DLLARG-IDFKGVNLVIN 462 (593)
T ss_pred HhccCeeEEEeh-----hhhhcc-ccccCcceEEe
Confidence 333 47899999 888887 89999999884
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.5 Score=42.04 Aligned_cols=86 Identities=20% Similarity=0.195 Sum_probs=44.8
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH--
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-- 152 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 152 (333)
+++++++|+|||....--+.. +.. ..+.+++++. +.|.-+.++. +.++...++.+.....+.+..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~-l~~---~~G~kV~lV~~D~~R~aa~eQL---~~~a~~~gv~v~~~~~~~dp~~i~~~a 175 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKY-LKK---KKKKKVLLVAADVYRPAAIEQL---KTLGEQIGVPVFPSGDGQDPVDIAKAA 175 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHH-HHH---hcCCcEEEEEccccchHHHHHH---HHHHhhcCCeEEecCCCCCHHHHHHHH
Confidence 789999999999655433322 222 1134555554 3444444333 3344456766554422223222211
Q ss_pred --Hh-hCCC-CEEEECchHHH
Q psy18032 153 --RL-HASP-DIVVATPGRFL 169 (333)
Q Consensus 153 --~l-~~~~-~IlI~TP~rll 169 (333)
.. ..++ -|||=||+|+.
T Consensus 176 ~~~a~~~~~DvVIIDTaGrl~ 196 (433)
T PRK10867 176 LEEAKENGYDVVIVDTAGRLH 196 (433)
T ss_pred HHHHHhcCCCEEEEeCCCCcc
Confidence 11 2345 47889999873
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.83 Score=41.90 Aligned_cols=86 Identities=19% Similarity=0.226 Sum_probs=43.4
Q ss_pred CcEEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEc-c-cHHHHHHHHHHHHHHhccCCceEEEEECCcch-HHH
Q psy18032 75 RDVVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILS-P-TRELALQTFKFVKELGKFTKLQSTCLLGGDSM-DNQ 150 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~-P-t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~-~~~ 150 (333)
+-+.++||+|+|||.... ++... .. .+.+++++. . .+.-+.++...+.. ..++.+.....+.+. ...
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l--~~----~g~~V~Li~~D~~r~~a~eql~~~a~---~~~i~~~~~~~~~dpa~~v 185 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKY--KA----QGKKVLLAAGDTFRAAAIEQLQVWGE---RVGVPVIAQKEGADPASVA 185 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH--Hh----cCCeEEEEecCccchhhHHHHHHHHH---HcCceEEEeCCCCCHHHHH
Confidence 347889999999995443 33222 12 244566654 2 34444444333332 345554433322222 111
Q ss_pred H----HHhhCCC-CEEEECchHHH
Q psy18032 151 F----ARLHASP-DIVVATPGRFL 169 (333)
Q Consensus 151 ~----~~l~~~~-~IlI~TP~rll 169 (333)
. ....+++ .|+|=||+++.
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCc
Confidence 1 1223444 47789999864
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.41 Score=47.64 Aligned_cols=71 Identities=17% Similarity=0.345 Sum_probs=55.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+..+.++++.+.. .++.+..++|+.+..++.+.+. + ..+|||+| +.+..+ +++.++
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~arG-IDip~V 326 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLER----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAARG-LHIDGV 326 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHH----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhhcC-CCccCC
Confidence 56899999999999999998876 4788999999988766554443 2 48999999 555544 678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 327 ~~VIn 331 (572)
T PRK04537 327 KYVYN 331 (572)
T ss_pred CEEEE
Confidence 87774
|
|
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.42 Score=48.75 Aligned_cols=103 Identities=22% Similarity=0.231 Sum_probs=81.3
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
|+. |..+|.- -.+.-...-++-+.||=|||+++.+|+.-.... |..+.++.-.--||.--.+++..+..++|
T Consensus 78 g~~-~~dVQli--G~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~-----gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GMR-HFDVQLL--GGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA-----GKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CCC-hhhHHHh--hhhhhcCCceeeeecCCchHHHHHHHHHHHhcC-----CCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 555 4555544 444445567899999999999999998766555 44688999999999999999999999999
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
+.+.+...+.+..++.... .|+|..+|-..+
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnEl 180 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNEL 180 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceecccccc
Confidence 9999999998776654433 589999998765
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.049 Score=55.79 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=29.5
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.+.++.++.-...||||||++|+||+|+++..
T Consensus 44 ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~ 78 (742)
T TIGR03817 44 AAELAHAGRHVVVATGTASGKSLAYQLPVLSALAD 78 (742)
T ss_pred HHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 45666677788888899999999999999999854
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.98 Score=45.59 Aligned_cols=81 Identities=22% Similarity=0.192 Sum_probs=55.7
Q ss_pred CCcHHHHhHHHHHhc----CCcEEEECCCCcHHH--HHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLE----GRDVVAMARTGSGKT--ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+.++|++.+.-+.+ +..-|+--.-|-||| .+.+|+.+++-.. -...+|||||.. ++.|..+.+..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k----~~~paLIVCP~T-ii~qW~~E~~~w~- 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK----LTKPALIVCPAT-IIHQWMKEFQTWW- 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc----ccCceEEEccHH-HHHHHHHHHHHhC-
Confidence 457788887765543 456777788999999 3444555554321 124699999986 5677777788754
Q ss_pred cCCceEEEEECCcc
Q psy18032 133 FTKLQSTCLLGGDS 146 (333)
Q Consensus 133 ~~~~~~~~~~g~~~ 146 (333)
+..++..++|..+
T Consensus 279 -p~~rv~ilh~t~s 291 (923)
T KOG0387|consen 279 -PPFRVFILHGTGS 291 (923)
T ss_pred -cceEEEEEecCCc
Confidence 5678888887655
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.037 Score=50.90 Aligned_cols=31 Identities=45% Similarity=0.792 Sum_probs=29.1
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhh
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFF 323 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~ 323 (333)
..+|.++.+.++.+|+=||||||+.|+||++
T Consensus 199 QGlPvvLsGRDmIGIAfTGSGKTlvFvLP~i 229 (610)
T KOG0341|consen 199 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPVI 229 (610)
T ss_pred cCcceEeecCceeeEEeecCCceEEEeHHHH
Confidence 6789999999999999999999999999974
|
|
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.35 Score=44.21 Aligned_cols=44 Identities=25% Similarity=0.366 Sum_probs=32.0
Q ss_pred CCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 57 YKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+..+++.|..-+.. +-++++++++++||||||. ++.+++..+-.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~ 169 (312)
T COG0630 125 YGTISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP 169 (312)
T ss_pred cCCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc
Confidence 45567777665555 6668999999999999994 56666665544
|
|
| >PRK13850 type IV secretion system protein VirD4; Provisional | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.13 Score=51.95 Aligned_cols=48 Identities=27% Similarity=0.244 Sum_probs=38.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++++.||||||||..+++|-+-... ..+||+=|--|+........++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~-------gS~VV~DpKGE~~~~Ta~~R~~ 187 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK-------GSVIALDVKGELFELTSRARKA 187 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC-------CCEEEEeCCchHHHHHHHHHHh
Confidence 47999999999999999999876532 2588888888888777665554
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.16 Score=45.32 Aligned_cols=86 Identities=21% Similarity=0.260 Sum_probs=46.0
Q ss_pred HHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEE
Q psy18032 64 QRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142 (333)
Q Consensus 64 Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (333)
..+.+.. +..+.+++++|+||||||.. +-.++..+... ..+++++-.+.|+-. ...+.......
T Consensus 116 ~~~~l~~~v~~~~~ili~G~tGSGKTT~-l~all~~i~~~----~~~iv~iEd~~E~~l----------~~~~~~~~~~~ 180 (270)
T PF00437_consen 116 IAEFLRSAVRGRGNILISGPTGSGKTTL-LNALLEEIPPE----DERIVTIEDPPELRL----------PGPNQIQIQTR 180 (270)
T ss_dssp HHHHHHHCHHTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----TSEEEEEESSS-S------------SCSSEEEEEEE
T ss_pred HHHHHhhccccceEEEEECCCccccchH-HHHHhhhcccc----ccceEEeccccceee----------cccceEEEEee
Confidence 3334443 45578999999999999963 45556665552 356777777777633 11122122222
Q ss_pred -CCcchHHHH-HHhhCCCCEEEEC
Q psy18032 143 -GGDSMDNQF-ARLHASPDIVVAT 164 (333)
Q Consensus 143 -g~~~~~~~~-~~l~~~~~IlI~T 164 (333)
++.+..+.. ..++.+|++++..
T Consensus 181 ~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 181 RDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp TTTBSHHHHHHHHTTS--SEEEES
T ss_pred cCcccHHHHHHHHhcCCCCccccc
Confidence 344444443 3355578877643
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.2 Score=40.97 Aligned_cols=35 Identities=23% Similarity=0.252 Sum_probs=26.4
Q ss_pred cHHHHhHHHHHhcC--C---cEEEECCCCcHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEG--R---DVVAMARTGSGKTACFLIPM 95 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g--~---d~l~~a~TGsGKT~~~~l~~ 95 (333)
+|+|+..|..+... + -.++.||.|.|||..+..-+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 68888888887743 2 48899999999996555443
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.37 Score=44.71 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=27.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+..++++||||||||... -.++..+.. ..+.+++.+--..|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~---~~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINK---NAAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCc---CCCCEEEEEcCChhhh
Confidence 467999999999999643 344554443 1234566665555543
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.19 Score=49.97 Aligned_cols=45 Identities=29% Similarity=0.370 Sum_probs=30.0
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
|.++|| .+.|.+.+..++... -++++||||||||... ..++..+.
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 455555 355666666655533 4889999999999653 55666664
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.73 Score=41.18 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=28.7
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+++.|++|+|||..+. ++.+.+.. .+..+ +..+..++..++...
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~----~~~~v-~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIE----KGVPV-IFVNFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH----cCCeE-EEEEHHHHHHHHHHH
Confidence 49999999999996444 45555554 13344 444566666655443
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=1.2 Score=44.22 Aligned_cols=71 Identities=20% Similarity=0.306 Sum_probs=54.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.++++.-|..+.+.++. .++.+..++|+.+..++...+ ++ ...|||+| +.+.. .+++.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~----~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~~r-GIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRL----DGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVASR-GLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHH----cCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chhhc-CCCccc
Confidence 366899999999999999888875 477888999988776654443 33 47899999 55444 467778
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 446 v~~VI 450 (545)
T PTZ00110 446 VKYVI 450 (545)
T ss_pred CCEEE
Confidence 87777
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.39 Score=43.07 Aligned_cols=42 Identities=31% Similarity=0.538 Sum_probs=30.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.++++.|+||||||.... .++..+.. .+..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~----~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR----RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH----cCCCEEEEcCCchHHH
Confidence 478999999999997766 44444443 2677888877766554
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.67 E-value=1.3 Score=40.67 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=28.4
Q ss_pred CCCCcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHH
Q psy18032 57 YKIPTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFL 92 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~ 92 (333)
+..++|+|..++..+.. |+ -.++.||.|+||+..+.
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 45688999999988764 33 38999999999996444
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.22 Score=43.95 Aligned_cols=53 Identities=19% Similarity=0.263 Sum_probs=35.9
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|..+++.|++|+|||...+--+.+.+.. +-.+++++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~-----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 35679999999999996544434444433 44677766 6666777777777754
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=92.58 E-value=1.1 Score=41.22 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=61.6
Q ss_pred CcHHHHhHHHHHhcCC----cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEcccH--
Q psy18032 60 PTPIQRKTIPLVLEGR----DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPTR-- 117 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~----d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt~-- 117 (333)
.+|+|...|..+.... -.++.||.|.|||..+..-+-..+...+. ...|-..++.|..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~ 83 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD 83 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC
Confidence 4789999999977642 48899999999996544332222222111 1245667787742
Q ss_pred --HHHHHHHHHHHHHh---ccCCceEEEEECCcchHH-----HHHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 118 --ELALQTFKFVKELG---KFTKLQSTCLLGGDSMDN-----QFARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 118 --~L~~q~~~~~~~~~---~~~~~~~~~~~g~~~~~~-----~~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
--+.|+.+..+.+. ...+.+++.+........ -.+.+.+ ++-++.+| |++++.-+..
T Consensus 84 ~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S 155 (328)
T PRK05707 84 KTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS 155 (328)
T ss_pred CCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh
Confidence 22334443333332 223567776654443222 2233333 34555555 4566554443
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=92.55 E-value=1 Score=47.89 Aligned_cols=77 Identities=23% Similarity=0.212 Sum_probs=54.8
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
++++..++.....++. +++-|.+++..+..+ +=++++|+.|+|||...- ++...+.. .|.+++.++||-.=+.
T Consensus 366 ~v~~~~l~a~~~~~~~-Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~----~G~~V~g~ApTgkAA~ 439 (1102)
T PRK13826 366 GVREAVLAATFARHAR-LSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA----AGYRVVGGALAGKAAE 439 (1102)
T ss_pred CCCHHHHHHHHhcCCC-CCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH----cCCeEEEEcCcHHHHH
Confidence 4556666665555555 899999999988653 449999999999995333 33333333 3778999999988776
Q ss_pred HHHH
Q psy18032 122 QTFK 125 (333)
Q Consensus 122 q~~~ 125 (333)
.+.+
T Consensus 440 ~L~e 443 (1102)
T PRK13826 440 GLEK 443 (1102)
T ss_pred HHHH
Confidence 6644
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.095 Score=50.44 Aligned_cols=68 Identities=34% Similarity=0.501 Sum_probs=52.7
Q ss_pred EEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEEecch
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 239 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~~~~~ 239 (333)
-||.||.|-+.+....+ ++.+......+...+.++-..-.+-+-+...|+|+++||||+..++.+.+.
T Consensus 266 ~LV~tPTRELa~QV~~H------------l~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~ 333 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQH------------LKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNT 333 (731)
T ss_pred eEEecChHHHHHHHHHH------------HHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhh
Confidence 78999999998887766 566666666666667777666667677778999999999999877766543
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.52 Score=41.90 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=28.5
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
+-.|.++++.||+|+|||.....-... +.. .|..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~-a~~----~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE-AVR----AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH-HHH----cCCeEEEE-eHHHHHHHH
Confidence 455789999999999999544432222 222 25556555 445555443
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.66 Score=36.10 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=14.7
Q ss_pred CCcEEEECCCCcHHHH
Q psy18032 74 GRDVVAMARTGSGKTA 89 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~ 89 (333)
++.+++.||+|+|||.
T Consensus 19 ~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 19 PKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCeEEEECCCCCCHHH
Confidence 6789999999999995
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.7 Score=35.72 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=41.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc-c-cHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----H
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS-P-TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN----Q 150 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~-P-t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~----~ 150 (333)
+++.|++|+|||....--+. .+.. .+.+++++. . .+.-.. +.+..++...++.+.......+..+ .
T Consensus 3 ~~~~G~~G~GKTt~~~~la~-~~~~----~g~~v~~i~~D~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL-YLKK----KGKKVLLVAADTYRPAAI---EQLRVLGEQVGVPVFEEGEGKDPVSIAKRA 74 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCcEEEEEcCCCChHHH---HHHHHhcccCCeEEEecCCCCCHHHHHHHH
Confidence 57889999999976443332 2222 244555544 3 332222 2343344445655443322222221 1
Q ss_pred HH-HhhCCC-CEEEECchHH
Q psy18032 151 FA-RLHASP-DIVVATPGRF 168 (333)
Q Consensus 151 ~~-~l~~~~-~IlI~TP~rl 168 (333)
.. ....+. -|+|=||+..
T Consensus 75 ~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 75 IEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred HHHHHhCCCCEEEEECcccc
Confidence 11 223344 4778888875
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.19 Score=38.92 Aligned_cols=41 Identities=22% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+..+++.||+|+|||.....-+ ..+.. .+..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~-~~~~~----~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALA-RELGP----PGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHH-hccCC----CCCCEEEECCEEcc
Confidence 4679999999999997544322 22222 12246777766543
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.2 Score=43.44 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=73.0
Q ss_pred CCCcHHHHhHHHHHhc---CC-------cEEEECCCCcHHHHHHHHHHHHHhhh-hcc--cCCceEEEEcccHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLE---GR-------DVVAMARTGSGKTACFLIPMLEKLKT-HAA--TSGVRALILSPTRELALQTF 124 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~---g~-------d~l~~a~TGsGKT~~~~l~~l~~l~~-~~~--~~~~~~lil~Pt~~L~~q~~ 124 (333)
..++|+|++.+..+.+ |. ..++.=..|+|||+-.. +.+..+.+ .+. +--.++|||+|.. |+.-.+
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWk 314 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCI-SFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWK 314 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHH-HHHHHHHHhCcCccccccccEEEccHH-HHHHHH
Confidence 3479999999998876 32 25555568999997443 34444333 222 0114789999975 567777
Q ss_pred HHHHHHhccCCceEEEEECCcch--HHHHHHhhC-----CCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 125 KFVKELGKFTKLQSTCLLGGDSM--DNQFARLHA-----SPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~l~~-----~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.|.++...-.+....++|+.+. ......+.- ..-|++.+-+.+.+.... +....+.+||.
T Consensus 315 kEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVc 382 (776)
T KOG0390|consen 315 KEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVC 382 (776)
T ss_pred HHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEE
Confidence 77777654345666677777663 111122211 234566666665544332 33455555553
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.094 Score=49.57 Aligned_cols=34 Identities=35% Similarity=0.560 Sum_probs=27.4
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.+..-.+.||+|||.+|++|+++.++.
T Consensus 59 i~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~ 92 (401)
T PTZ00424 59 IKPILDGYDTIGQAQSGTGKTATFVIAALQLIDY 92 (401)
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcC
Confidence 4445555666778999999999999999998864
|
|
| >TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily | Back alignment and domain information |
|---|
Probab=91.90 E-value=0.49 Score=47.59 Aligned_cols=53 Identities=19% Similarity=0.340 Sum_probs=39.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH--HHHHHHHHHHHHhc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE--LALQTFKFVKELGK 132 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 132 (333)
.++++.|+||+|||..+.+-+.+.+.. +..++++=|-.. |...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~-----g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR-----GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 579999999999998775555555544 556788878764 78888888877654
|
Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. |
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.15 Score=53.02 Aligned_cols=44 Identities=30% Similarity=0.364 Sum_probs=36.7
Q ss_pred ccccchHHHhhhCCCCccccccccCCcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 269 MIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 269 ~lh~~r~~l~~f~~g~~~vLvaTd~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.|+.|.++++..++| -+|+|+| =||||||.+|++|||+++=++.
T Consensus 71 lY~HQ~~A~~~~~~G-~~vvVtT-----------------gTgSGKTe~FllPIld~~l~~~ 114 (851)
T COG1205 71 LYSHQVDALRLIREG-RNVVVTT-----------------GTGSGKTESFLLPILDHLLRDP 114 (851)
T ss_pred ccHHHHHHHHHHHCC-CCEEEEC-----------------CCCCchhHHHHHHHHHHHhhCc
Confidence 667799999999999 4566666 3899999999999999986654
|
|
| >TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.5 Score=43.79 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=40.5
Q ss_pred HHHHHhCCCCCCcHHHHhHHHHHh-cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPLVL-EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~i~-~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
++.|.+.|+ +++.+.+.+..+. .+.+++++++||||||.. +-.++..+.. ..+.+++--+.||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~-----~~riv~iEd~~El~ 218 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP-----DERIVLVEDAAELR 218 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC-----CCcEEEECCcceec
Confidence 445556665 3566777666644 467999999999999953 3334443322 23566666666763
|
Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=91.65 E-value=0.39 Score=41.88 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=34.7
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
-.|.-+++.+++|+|||...+--+...+.. +.++++++ +.+-..+..+.+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~-----g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN-----GYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC-----CCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 447789999999999997543333332222 45678887 4444566666666543
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.66 Score=44.02 Aligned_cols=84 Identities=18% Similarity=0.149 Sum_probs=43.0
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
-++++||+|+|||....--+...... .+.++.++. +-|..+.+ .++.++...++...... ........
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~~---~~~~l~~~ 294 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPVK---DIKKFKET 294 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeehH---HHHHHHHH
Confidence 37899999999996555333332222 133444444 33444444 34444445565443221 11222222
Q ss_pred hh-CCCC-EEEECchHHH
Q psy18032 154 LH-ASPD-IVVATPGRFL 169 (333)
Q Consensus 154 l~-~~~~-IlI~TP~rll 169 (333)
+. .+++ |+|=||++..
T Consensus 295 l~~~~~D~VLIDTaGr~~ 312 (432)
T PRK12724 295 LARDGSELILIDTAGYSH 312 (432)
T ss_pred HHhCCCCEEEEeCCCCCc
Confidence 22 3455 8888998763
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.19 Score=44.68 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+++..+..|+++++.||+|+|||.++.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 3445556678999999999999997554
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.26 Score=45.20 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=36.4
Q ss_pred ccccCCCcccccC-CCHHHHHHHH--hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 31 KKKKMGGGFQSFG-LGFEVLKGVL--KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 31 ~~~~~~~~f~~~~-l~~~l~~~l~--~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.++.-+|++.| |.+++.+.-. ++...+|--++.--|. --+.||+-||+|+|||+.+=
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~---PPKGVLLYGPPGTGKTLLAk 203 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGID---PPKGVLLYGPPGTGKTLLAK 203 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCC---CCCceEeeCCCCCcHHHHHH
Confidence 3456677888886 6666554322 2344544444333221 13679999999999998554
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.43 Score=41.35 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=32.0
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|..+++.+++|+|||....--+.+.+.. +..+++++. .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~-----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD-----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 36789999999999996544333333322 445666664 44455655555544
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.7 Score=34.62 Aligned_cols=39 Identities=26% Similarity=0.353 Sum_probs=24.2
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~ 120 (333)
+++.||+|+|||.....-+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcchH
Confidence 578999999999744433332222 255677776654443
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG4439|consensus | Back alignment and domain information |
|---|
Probab=91.39 E-value=0.97 Score=45.04 Aligned_cols=107 Identities=20% Similarity=0.179 Sum_probs=68.0
Q ss_pred CcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhh-----cccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTH-----AATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+-|+|..++.-++-. ...|+--.-|-|||++..--+++.-... .......+|||||-. |+.|.+..+..
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHHH
Confidence 567888887666543 3477788899999986665555442221 111122599999964 67777777776
Q ss_pred HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHH
Q psy18032 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF 168 (333)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl 168 (333)
-...-.++|...+|....+-..+.+. .++|+|+|-.-.
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L~-~YDvViTTY~lv 442 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKELR-KYDVVITTYNLV 442 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHHh-hcceEEEeeecc
Confidence 55555677777777664332233333 589999986433
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.3 Score=42.68 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=47.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+++.+++|+|||...+--+. .+.. .+.+++|++- .+-..|+....++++... .-..+....+..+..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~-~~a~----~g~~vlYvs~-Ees~~qi~~ra~rlg~~~--~~l~~~~e~~l~~i~~~ 151 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAA-RLAA----AGGKVLYVSG-EESASQIKLRAERLGLPS--DNLYLLAETNLEAILAT 151 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-HHHh----cCCeEEEEEc-cccHHHHHHHHHHcCCCh--hcEEEeCCCCHHHHHHH
Confidence 45689999999999964333322 2222 2557888874 455667777777654321 11233444445444444
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.+ +++++|.-+
T Consensus 152 i~~~~~~lVVIDS 164 (446)
T PRK11823 152 IEEEKPDLVVIDS 164 (446)
T ss_pred HHhhCCCEEEEec
Confidence 433 466665544
|
|
| >KOG1002|consensus | Back alignment and domain information |
|---|
Probab=91.17 E-value=1.8 Score=41.50 Aligned_cols=105 Identities=18% Similarity=0.230 Sum_probs=67.1
Q ss_pred CcHHHHhHHHHHhcCCc-----EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 60 PTPIQRKTIPLVLEGRD-----VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d-----~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+-|+|.+.+--+....+ -++.-.-|.|||.-..--++..+. +..+||++|+.+|+ |..+.+.++.. -
T Consensus 185 LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~------ra~tLVvaP~VAlm-QW~nEI~~~T~-g 256 (791)
T KOG1002|consen 185 LLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD------RAPTLVVAPTVALM-QWKNEIERHTS-G 256 (791)
T ss_pred chhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc------cCCeeEEccHHHHH-HHHHHHHHhcc-C
Confidence 56788887765555433 556667899999765544444322 33599999999975 55666666544 2
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
..++...+|.. .....+.+. +++++.+|-.-+....++
T Consensus 257 slkv~~YhG~~-R~~nikel~-~YDvVLTty~vvEs~yRk 294 (791)
T KOG1002|consen 257 SLKVYIYHGAK-RDKNIKELM-NYDVVLTTYAVVESVYRK 294 (791)
T ss_pred ceEEEEEeccc-ccCCHHHhh-cCcEEEEecHHHHHHHHh
Confidence 35555555544 333334443 589999998877766654
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=91.07 E-value=0.84 Score=43.71 Aligned_cols=70 Identities=13% Similarity=0.254 Sum_probs=54.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..++||.+++++-+..+++.++. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~~-GiDip~v 314 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRK----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAAR-GIDIDDV 314 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccccc-CccCCCC
Confidence 46899999999999999998886 5788999999988766654443 3 48999999 44443 4677787
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 315 ~~VI 318 (434)
T PRK11192 315 SHVI 318 (434)
T ss_pred CEEE
Confidence 7776
|
|
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.41 Score=42.50 Aligned_cols=38 Identities=11% Similarity=0.056 Sum_probs=25.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.|.-+++.|++|+|||...+--+.+.+.. +.++++++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~-----Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR-----GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEe
Confidence 35669999999999996544333433322 557888774
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.2 Score=40.64 Aligned_cols=47 Identities=17% Similarity=0.202 Sum_probs=27.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
++++++.||+|+|||.... ++.+.+.. +|..+.++ ...+|+.++...
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~----~g~~v~~~-~~~~l~~~lk~~ 202 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK----KGVSSTLL-HFPEFIRELKNS 202 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCEEEE-EHHHHHHHHHHH
Confidence 4679999999999995443 33344433 24444444 334566555443
|
|
| >TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.65 Score=46.43 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=42.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH--HHHHHHHHHHHHHhcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR--ELALQTFKFVKELGKF 133 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~~ 133 (333)
.++++.|+||+|||..+.+-+.+.+.. +..++++=|-. ++...++..++..++.
T Consensus 181 gHtlV~GtTGsGKT~l~~~li~q~i~~-----g~~vi~fDpkgD~el~~~~~~~~~~~GR~ 236 (643)
T TIGR03754 181 GHTLVLGTTRVGKTRLAELLITQDIRR-----GDVVIVFDPKGDADLLKRMYAEAKRAGRL 236 (643)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCCHHHHHHHHHHHHHhCCC
Confidence 479999999999998877766666654 55788888876 6778888888887763
|
Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion. |
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.9 Score=50.05 Aligned_cols=62 Identities=27% Similarity=0.315 Sum_probs=46.0
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHH--HHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACF--LIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~--~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.+++-|.+++..++.. +-++++|..|+|||... ++.++..+.. ..+..++.++||-.=+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHH
Confidence 5899999999999976 45999999999999653 2333333222 2356788999998877665
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=90.84 E-value=0.11 Score=47.71 Aligned_cols=124 Identities=21% Similarity=0.327 Sum_probs=84.4
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhh-cCCcEEEeCCCceEEEEE
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-~~~~i~~~t~~~i~~~~~ 235 (333)
.+++++-.|.|.+....... ...+...+....+.+..+++...+..++. ..++++++||||+.+.+.
T Consensus 94 e~qalilaPtreLa~qi~~v------------~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~ 161 (397)
T KOG0327|consen 94 ETQALILAPTRELAQQIQKV------------VRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLN 161 (397)
T ss_pred HHHHHHhcchHHHHHHHHHH------------HHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhc
Confidence 36788888888776665543 56677777777887777777776655554 568999999999988886
Q ss_pred ecchhhhhHH---------HHhhcchhhHHHHHHHhc-CCCcccccc----chHHH-hhhCCCCcccccccc
Q psy18032 236 EMELKLSSIQ---------LSLTDFKQDTSRIALDLV-GDSTEMIHK----QRQSV-RKWDPAKKKYVQVTD 292 (333)
Q Consensus 236 ~~~~k~~~l~---------lif~~~~~~~~~l~~~L~-g~~~~~lh~----~r~~l-~~f~~g~~~vLvaTd 292 (333)
........+. .+-+++++..+.+++.+. ...+.++.+ .-..+ ++|....+++++-.|
T Consensus 162 ~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~ 233 (397)
T KOG0327|consen 162 RGSLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKD 233 (397)
T ss_pred cccccccceeEEeecchHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecch
Confidence 5443333332 344567777888887775 344444443 33334 788888888888776
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=0.35 Score=47.57 Aligned_cols=69 Identities=33% Similarity=0.577 Sum_probs=49.2
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++.+||.+|.+-+....... ...+.+..+.....++++..+..+...+..+++++++||+++.+++.
T Consensus 195 ~~~~aLIL~PTreLa~Qi~~~------------~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~ 262 (518)
T PLN00206 195 RNPLAMVLTPTRELCVQVEDQ------------AKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLS 262 (518)
T ss_pred CCceEEEEeCCHHHHHHHHHH------------HHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHH
Confidence 357899999998775443222 33444445556667778888888888888889999999998755544
Q ss_pred e
Q psy18032 236 E 236 (333)
Q Consensus 236 ~ 236 (333)
.
T Consensus 263 ~ 263 (518)
T PLN00206 263 K 263 (518)
T ss_pred c
Confidence 3
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.1 Score=47.80 Aligned_cols=40 Identities=30% Similarity=0.568 Sum_probs=32.2
Q ss_pred Ccccccc--cccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 294 TIPLVLE--GRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 294 ~i~~vi~--~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
.+|+.+. ..++......|+|||.||+|.+|.|+|.+..+|
T Consensus 120 aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 120 ALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred hcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 4566654 445667778899999999999999999988766
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=90.60 E-value=0.35 Score=41.81 Aligned_cols=54 Identities=30% Similarity=0.364 Sum_probs=33.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|..+++.|++|+|||...+--+.+.+... +-.+++++ +.+-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 356799999999999965443344443330 33577766 4555677777777653
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.25 Score=43.54 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=25.1
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRD-VVAMARTGSGKTAC 90 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~ 90 (333)
..++|++++|++-+.+. .++.+. ++++++|||||+..
T Consensus 106 ~IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTt 143 (375)
T COG5008 106 KIPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTT 143 (375)
T ss_pred cCCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhh
Confidence 34678888877755432 122233 89999999999964
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.45 Score=43.43 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=17.2
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
+..|.+++++||||||||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 45688999999999999963
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.33 Score=45.81 Aligned_cols=52 Identities=31% Similarity=0.569 Sum_probs=33.6
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
|.-...+++++.|.||||||. ++-.++..+.. .+-++||.=|.-+.....++
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~----~g~~~iI~D~kg~~~~~f~~ 61 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRA----RGDRAIIYDPKGEFTERFYR 61 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHH----TT-EEEEEEETTHHHHHH--
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHH----cCCEEEEEECCchHHHHhcC
Confidence 344556899999999999996 55566666655 25578888888777554443
|
It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A. |
| >PRK13822 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.3 Score=49.07 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=37.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++++.||||||||..+++|-+-. . +.-++++=|..|+........++
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~--~-----~gS~VV~DpKgEl~~~Ta~~R~~ 272 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALK--W-----GGPLVVLDPSTEVAPMVSEHRRD 272 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhc--C-----CCCEEEEeCcHHHHHHHHHHHHH
Confidence 579999999999999999997643 2 23588888999988777665554
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.29 Score=45.58 Aligned_cols=69 Identities=32% Similarity=0.588 Sum_probs=50.3
Q ss_pred CCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 156 ~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++.+|+-||.+-+.+.....+ . .-.+-.....++++++.-.++++.+.++.+++++||+|+.++..
T Consensus 293 ~~p~~lvl~ptreLalqie~e~------------~-kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~ 359 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEV------------K-KYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQM 359 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHH------------h-HhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhh
Confidence 3577888888777766655431 1 11223456788999999999999999999999999998766554
Q ss_pred ec
Q psy18032 236 EM 237 (333)
Q Consensus 236 ~~ 237 (333)
..
T Consensus 360 ~n 361 (629)
T KOG0336|consen 360 DN 361 (629)
T ss_pred cC
Confidence 43
|
|
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.42 E-value=0.48 Score=42.02 Aligned_cols=55 Identities=24% Similarity=0.242 Sum_probs=36.2
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.|+.+++.|++|||||.-.. -.+..... .|-.+++ +.+.+...++.+.+..++..
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~-qfl~~~~~----~ge~vly-vs~~e~~~~l~~~~~~~g~d 76 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFAL-QFLYEGAR----EGEPVLY-VSTEESPEELLENARSFGWD 76 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHH-HHHHHHHh----cCCcEEE-EEecCCHHHHHHHHHHcCCC
Confidence 46789999999999996433 33333222 1334554 45677788888888876543
|
|
| >PRK13876 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=90.36 E-value=0.19 Score=50.55 Aligned_cols=48 Identities=25% Similarity=0.223 Sum_probs=35.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++++.||||||||..+++|-+-... .-+||.=|--|+........++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~-------~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWP-------GSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCC-------CCEEEEeCcchHHHHHHHHHHh
Confidence 57999999999999999999876532 2467777777776655554433
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=1.1 Score=50.04 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=45.8
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+++.|.+++..++.+.| ++++|..|+|||...- .++..+..-....+..++.++||-.=+..+.
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 589999999999998754 9999999999995432 2222222111123567888999997766543
|
|
| >cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.26 Score=46.92 Aligned_cols=50 Identities=26% Similarity=0.456 Sum_probs=34.2
Q ss_pred HHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 68 IPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 68 i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
+|.-...+++++.|+||||||.+ +..++..+.. .+..++|+=|..++...
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~----~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA----RGDRAIIYDPNGGFVSK 85 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh----cCCCEEEEeCCcchhHh
Confidence 44445567999999999999975 4444444443 24568888888776544
|
TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria. |
| >TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.36 Score=48.31 Aligned_cols=49 Identities=22% Similarity=0.327 Sum_probs=38.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++.||||||||..+++|-+-.. +.-++++=|.-|+.......-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~-------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKY-------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcC-------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 5799999999999999999965432 235888888888877776655443
|
This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.48 Score=40.22 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=23.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
++++||||||||... ..++..+.. ..+.+++.+--..|+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~---~~~~~i~t~e~~~E~ 42 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINK---NKTHHILTIEDPIEF 42 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhh---cCCcEEEEEcCCccc
Confidence 689999999999653 344555443 123355555544444
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=90.20 E-value=0.98 Score=51.33 Aligned_cols=62 Identities=26% Similarity=0.358 Sum_probs=46.1
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHH---HHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFL---IPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~---l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.+++.|.+++..++.+.| ++++|+.|+|||.... -++...+.. .+..++.++||-.=+.++.
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHHH
Confidence 589999999999998755 7889999999996441 222333222 3678999999988776654
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK13880 conjugal transfer coupling protein TraG; Provisional | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.24 Score=49.86 Aligned_cols=46 Identities=28% Similarity=0.307 Sum_probs=36.7
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
+++++.||||||||..+++|.+-.. +..+||+=|--|+........
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~-------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSW-------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhC-------CCCEEEEeCcHHHHHHHHHHH
Confidence 5799999999999999999987642 336899999999876655543
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.54 Score=45.79 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=41.4
Q ss_pred hHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 66 KTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 66 ~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+..++.| .-+++.+|+|+|||...+--+.+.+.. +-+++|++ ..|-..|+.+.++.++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~-----ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN-----KERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555543 569999999999997544433333322 55787766 7788889988888864
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >KOG0741|consensus | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.39 Score=46.38 Aligned_cols=58 Identities=21% Similarity=0.273 Sum_probs=36.1
Q ss_pred CCCcccccCCCcccccC---CCHHHHHHHHhCCCCCCcHHHHhHHHH-Hhc------CCcEEEECCCCcHHHHHH
Q psy18032 27 NTGDKKKKMGGGFQSFG---LGFEVLKGVLKRGYKIPTPIQRKTIPL-VLE------GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 27 ~~~~~~~~~~~~f~~~~---l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~------g~d~l~~a~TGsGKT~~~ 91 (333)
...+.-..+.-.|++|| |+.+.-+.++.. +-++++|. +.+ =+.+++-+|+|+|||+.+
T Consensus 206 ~~~n~ii~Pdf~Fe~mGIGGLd~EFs~IFRRA-------FAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiA 273 (744)
T KOG0741|consen 206 PASNSIINPDFNFESMGIGGLDKEFSDIFRRA-------FASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIA 273 (744)
T ss_pred chhccccCCCCChhhcccccchHHHHHHHHHH-------HHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHH
Confidence 33444456667899996 677766655432 12222222 222 267999999999999855
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.29 Score=33.10 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.0
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|..+++.+|+|||||..
T Consensus 22 ~g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTL 39 (62)
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 345799999999999963
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=89.87 E-value=1.3 Score=42.99 Aligned_cols=71 Identities=15% Similarity=0.219 Sum_probs=54.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+..+||.++|+.-+.++++.++. .++.+..++|+.+..++...+. ...+|||+| +.+.. .+++.++
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~----~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT-----~~~~~-GID~p~V 295 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQN----LGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVAT-----VAFGM-GINKPDV 295 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHh----cCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEe-----chhhc-cCCcccc
Confidence 55679999999999999998886 4788999999988766554432 358999999 43433 4677788
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 296 ~~VI~ 300 (470)
T TIGR00614 296 RFVIH 300 (470)
T ss_pred eEEEE
Confidence 87774
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.63 Score=44.09 Aligned_cols=52 Identities=19% Similarity=0.250 Sum_probs=33.5
Q ss_pred cCCCHHHHHHHHhCCCCC--CcH-HHH----hHHHHHhcCCcEEEECCCCcHHHHHHHH
Q psy18032 42 FGLGFEVLKGVLKRGYKI--PTP-IQR----KTIPLVLEGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 42 ~~l~~~l~~~l~~~g~~~--~~~-~Q~----~~i~~i~~g~d~l~~a~TGsGKT~~~~l 93 (333)
+...+|+-=.+...||+. ++. .+. ++++.+-.+.|++..||+|+|||-.|.-
T Consensus 170 FT~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 170 FTLEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred cCHHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 344556655667788872 222 111 1225566788999999999999966653
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.85 Score=39.24 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.4
Q ss_pred CCcEEEECCCCcHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l 93 (333)
+.++++.||+|+|||.....
T Consensus 38 ~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999965543
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=89.62 E-value=0.36 Score=43.00 Aligned_cols=79 Identities=23% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFK 125 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~ 125 (333)
+++.++|...|.....+.-.+.+--+..|.-+++.|++|+|||....--+.+.+.. .+..+++++- .+-..++.+
T Consensus 2 ~~~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~-E~~~~~~~~ 76 (271)
T cd01122 2 EEIREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISL-EEPVVRTAR 76 (271)
T ss_pred chhhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEc-ccCHHHHHH
Confidence 45566666444443333322333345667789999999999996444333332222 2456777753 334555555
Q ss_pred HHHH
Q psy18032 126 FVKE 129 (333)
Q Consensus 126 ~~~~ 129 (333)
.+..
T Consensus 77 r~~~ 80 (271)
T cd01122 77 RLLG 80 (271)
T ss_pred HHHH
Confidence 5544
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >KOG0738|consensus | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.87 Score=42.39 Aligned_cols=57 Identities=19% Similarity=0.391 Sum_probs=36.9
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCC-CCc----H----------HHHh-----HHHHHhcC-----CcEEEECCCCcHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYK-IPT----P----------IQRK-----TIPLVLEG-----RDVVAMARTGSGKT 88 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~-~~~----~----------~Q~~-----~i~~i~~g-----~d~l~~a~TGsGKT 88 (333)
.....|+.++....|.++|+.-=.. .|. . .+.. .+|.+.+| +.++..+|+|+|||
T Consensus 180 ~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKT 259 (491)
T KOG0738|consen 180 GEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKT 259 (491)
T ss_pred cccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHH
Confidence 3456899999998999888753111 111 0 1111 23445555 68999999999999
Q ss_pred HH
Q psy18032 89 AC 90 (333)
Q Consensus 89 ~~ 90 (333)
+.
T Consensus 260 lL 261 (491)
T KOG0738|consen 260 LL 261 (491)
T ss_pred HH
Confidence 63
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.24 Score=44.37 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=19.8
Q ss_pred hHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 66 KTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 66 ~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.. +..++.++++||+|+|||....
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~ 51 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQ 51 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHH
Confidence 33444 4457889999999999997443
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.45 E-value=0.27 Score=46.60 Aligned_cols=57 Identities=16% Similarity=0.101 Sum_probs=37.3
Q ss_pred cccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
...+.-+|++++--+...+.+++. .+..|..++..- +...+.+++.||+|+|||...
T Consensus 137 ~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 137 SEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred cCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 346677899998777666666552 334333333222 223578999999999999754
|
|
| >PHA02533 17 large terminase protein; Provisional | Back alignment and domain information |
|---|
Probab=89.44 E-value=2 Score=42.33 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=53.9
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.|+|...+..+..++-.++..+-..|||.+...-++...... .+..+++++|+..-|..+++.++.+.
T Consensus 60 L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 60 MRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred CcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 7889999998876666678999999999987765444433321 25699999999999999999888643
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=89.28 E-value=1.3 Score=47.60 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=55.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.+++|++|+++-+...++.+++.. .+.++..++|+.+..+..+.+. ...+|||+| +.+..+ +++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~--p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIierG-IDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIETG-IDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhhcc-cccccC
Confidence 5689999999999999998888753 4678889999988766544433 259999999 555544 678888
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 881 ~~VI 884 (1147)
T PRK10689 881 NTII 884 (1147)
T ss_pred CEEE
Confidence 8887
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.75 Score=38.77 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=24.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.=.++.||+|+|||...+ -.+.++.. .+.+++++.|
T Consensus 3 ~i~litG~~GsGKTT~~l-~~~~~~~~----~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELL-QRAYNYEE----RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHH-HHHHHHHH----cCCeEEEEec
Confidence 346889999999996444 33444333 2567888876
|
|
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.79 Score=39.59 Aligned_cols=52 Identities=29% Similarity=0.435 Sum_probs=33.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.|++|+|||...+--+...+.. +..+++++- .+-..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~-----g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKN-----GEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 5679999999999986433333333332 446777655 445777777777653
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=88.99 E-value=5.9 Score=35.82 Aligned_cols=119 Identities=16% Similarity=0.141 Sum_probs=74.5
Q ss_pred cccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc----------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 40 QSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE----------GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 40 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
-.+.|+++++. . ..++..|.+++-.... ....++==.||.||--...--++..+... ..+
T Consensus 24 y~~~lp~~~~~----~--g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r 93 (303)
T PF13872_consen 24 YRLHLPEEVID----S--GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKR 93 (303)
T ss_pred cccCCCHHHHh----c--ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCc
Confidence 44567775543 2 2368899998877763 23466666699988754444456665551 347
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 173 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~ 173 (333)
+|+++.+-.|-.+..+.++.++.. .+.+..+.. .+..+. ..+ .-.||++|-..|...-.
T Consensus 94 ~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~-~~~~~~-~~~--~~GvlF~TYs~L~~~~~ 152 (303)
T PF13872_consen 94 AVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNK-FKYGDI-IRL--KEGVLFSTYSTLISESQ 152 (303)
T ss_pred eEEEECChhhhhHHHHHHHHhCCC-cccceechh-hccCcC-CCC--CCCccchhHHHHHhHHh
Confidence 999999999999999999987653 444333322 111110 112 34589999877765543
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=88.94 E-value=1.6 Score=38.15 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
..++++||+|+|||-. +-++.+.+.. ++.+++++. ..++....
T Consensus 46 ~~l~l~G~~G~GKTHL-l~a~~~~~~~----~~~~v~y~~-~~~~~~~~ 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL-LQAACLRFEQ----RGEPAVYLP-LAELLDRG 88 (234)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHh----CCCcEEEee-HHHHHhhh
Confidence 4589999999999964 2333444433 245666655 46666544
|
|
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=88.72 E-value=0.64 Score=39.60 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=26.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
|.=+.+.||+|+|||...+-.+.+.... +..++++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~-----g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQ-----GKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEECC
Confidence 4568999999999997665444443322 5577877764
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.4 Score=46.28 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=55.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
++.+++|++|+.+-+..+++.++++. .+.++..++|+.+..+..+.+. + ..+|||+| +.+..+ +++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT-----~iie~G-IDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCT-----TIIETG-IDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----Chhhcc-ccccc
Confidence 36799999999999999988888753 4788999999988766554443 2 58999999 555544 67777
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 731 v~~VI 735 (926)
T TIGR00580 731 ANTII 735 (926)
T ss_pred CCEEE
Confidence 77666
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=88.53 E-value=0.62 Score=43.41 Aligned_cols=26 Identities=23% Similarity=0.193 Sum_probs=19.9
Q ss_pred hHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+...+..+.++++.||||+|||...
T Consensus 111 ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 111 DIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 33344556889999999999999644
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=88.26 E-value=3.8 Score=38.48 Aligned_cols=84 Identities=23% Similarity=0.320 Sum_probs=46.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.=+++.|++|+|||...+-- +..+.. .+.+++|++-. +-..|+....++++.. ..-..+......++..+.
T Consensus 82 GslvLI~G~pG~GKStLllq~-a~~~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg~~--~~~l~l~~e~~le~I~~~ 153 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQV-AARLAK----RGGKVLYVSGE-ESPEQIKLRADRLGIS--TENLYLLAETNLEDILAS 153 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHH-HHHHHh----cCCeEEEEECC-cCHHHHHHHHHHcCCC--cccEEEEccCcHHHHHHH
Confidence 456999999999999644433 333322 24578888754 4456666666665321 122233344444444343
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.. +++++|.-+
T Consensus 154 i~~~~~~lVVIDS 166 (372)
T cd01121 154 IEELKPDLVIIDS 166 (372)
T ss_pred HHhcCCcEEEEcc
Confidence 332 566666554
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.15 E-value=1 Score=41.67 Aligned_cols=65 Identities=25% Similarity=0.309 Sum_probs=47.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCC-c-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGR-D-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~-d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
.|+..-+..|.-|+..++... + |.+.++-|||||+.++-+.+......+ .-.+.|+--|+..+.+
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGE 290 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCccc
Confidence 477755667777787777643 2 888999999999999888888776632 2335777777777643
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=88.08 E-value=0.32 Score=50.30 Aligned_cols=34 Identities=15% Similarity=0.240 Sum_probs=28.7
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
.+|.++.+..+....+||+|||++|+||+++++.
T Consensus 100 ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL 133 (970)
T PRK12899 100 ILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNAL 133 (970)
T ss_pred HhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHh
Confidence 4566666778889999999999999999998764
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.88 Score=35.25 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=14.6
Q ss_pred CCcEEEECCCCcHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPML 96 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l 96 (333)
++-+++.||+|+|||.+...-+-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~ 26 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLAR 26 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999975544333
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.28 Score=50.16 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=32.8
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
..+|.+.++.++.-++-||+|||.|.+||+|.++-+.
T Consensus 29 ~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~ 65 (814)
T COG1201 29 YAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSL 65 (814)
T ss_pred HHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhc
Confidence 4678888999999999999999999999999988653
|
|
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=87.87 E-value=2.6 Score=40.70 Aligned_cols=84 Identities=19% Similarity=0.202 Sum_probs=46.8
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
|.-+++.|++|+|||...+-- +..+.. .+.+++|++.- +-..|+.....+++- ...-..+....+.......
T Consensus 94 GsvilI~G~pGsGKTTL~lq~-a~~~a~----~g~kvlYvs~E-Es~~qi~~ra~rlg~--~~~~l~~~~e~~~~~I~~~ 165 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQV-ACQLAK----NQMKVLYVSGE-ESLQQIKMRAIRLGL--PEPNLYVLSETNWEQICAN 165 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHH-HHHHHh----cCCcEEEEECc-CCHHHHHHHHHHcCC--ChHHeEEcCCCCHHHHHHH
Confidence 456999999999999654433 333332 24468888754 556677766666532 1222223334444443333
Q ss_pred hhC-CCCEEEECc
Q psy18032 154 LHA-SPDIVVATP 165 (333)
Q Consensus 154 l~~-~~~IlI~TP 165 (333)
+.+ +++++|.-+
T Consensus 166 i~~~~~~~vVIDS 178 (454)
T TIGR00416 166 IEEENPQACVIDS 178 (454)
T ss_pred HHhcCCcEEEEec
Confidence 333 566665544
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=87.85 E-value=1.5 Score=38.16 Aligned_cols=49 Identities=20% Similarity=0.203 Sum_probs=29.5
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.+++.||+|+|||-... ++...+.. .+.+++++ |..++.....+.++.+
T Consensus 43 ~l~l~G~~G~GKThL~~-a~~~~~~~----~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 43 WLYLSGPAGTGKTHLAL-ALCAAAEQ----AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHH----cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 49999999999995443 23333333 24566665 4555555555555443
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.9 Score=39.90 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=22.1
Q ss_pred EEEECCCCcHHHHHHHHHHHHHh-hhhcccCCceEEEEcc
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKL-KTHAATSGVRALILSP 115 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l-~~~~~~~~~~~lil~P 115 (333)
+.+.|++|+|||......+.... -......+..++++.-
T Consensus 121 teI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdt 160 (337)
T PTZ00035 121 TELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDT 160 (337)
T ss_pred EEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEc
Confidence 77999999999954433322221 1111112457777764
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=87.60 E-value=1.4 Score=44.28 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=55.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+..+||.++|+.-+.++++.++. .++.+..++|+.+..++.+.+. ...+|||+| +.+. ..+++.+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~----~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT-----~a~~-~GIDip~ 304 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQS----RGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-----VAFG-MGINKPN 304 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHh----CCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEe-----chhh-ccCCCCC
Confidence 356799999999999999998887 4788999999988766544432 248999999 4443 3578888
Q ss_pred chhhHH
Q psy18032 182 IQYTFK 187 (333)
Q Consensus 182 l~~lV~ 187 (333)
++++|.
T Consensus 305 V~~VI~ 310 (607)
T PRK11057 305 VRFVVH 310 (607)
T ss_pred cCEEEE
Confidence 888875
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=87.60 E-value=1 Score=43.92 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=38.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.|.-+++.+++|+|||...+--+.+.+.. .+-.+++++- .|-..++.+.+..++-
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~----~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH----FDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 35779999999999997655444444332 1346777774 4777888888887653
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=87.55 E-value=5 Score=36.88 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=58.3
Q ss_pred cHHHHhHHHHHh----cCC---cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEccc-
Q psy18032 61 TPIQRKTIPLVL----EGR---DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPT- 116 (333)
Q Consensus 61 ~~~Q~~~i~~i~----~g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt- 116 (333)
+|+|+..+..+. +|+ -.++.||.|.||+..+..-+-..+...+. ...|-..++.|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 567777666655 343 47899999999996554333332222111 124556667773
Q ss_pred -HH-HHHHHHHHHHHH---hccCCceEEEEECCcchHHH-----HHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 117 -RE-LALQTFKFVKEL---GKFTKLQSTCLLGGDSMDNQ-----FARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 117 -~~-L~~q~~~~~~~~---~~~~~~~~~~~~g~~~~~~~-----~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
.. -+.|+.+..+.+ ....+.+++.+......... .+.+.+ +.-++.+| |++++.-+..
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 11 233333322222 22235677777765543322 223333 23344444 5677765554
|
|
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=87.50 E-value=2.5 Score=34.90 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=30.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
+++.|++|||||.-+.--+.. .+.++++++....+-.+..+.+.+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~--------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE--------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh--------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 588999999999644422221 244788998888776666655554
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=87.44 E-value=0.77 Score=40.19 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=18.6
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++.|++|||||. +++.++..+..
T Consensus 15 r~viIG~sGSGKT~-li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTT-LIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHH-HHHHHHHhhcc
Confidence 68999999999995 55555554433
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=87.41 E-value=0.25 Score=47.10 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=26.7
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
|...-+.++.-.+-||||||++|++||+|-+-.
T Consensus 178 p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~ 210 (620)
T KOG0350|consen 178 PPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS 210 (620)
T ss_pred CCCCCCCceEEecCCCCCceeeehhHHHHHHcc
Confidence 444445688888999999999999999987643
|
|
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=87.27 E-value=0.74 Score=44.03 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=27.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
|-......+..+..++++++.||+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 555667778888889999999999999996554
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=87.09 E-value=0.33 Score=47.85 Aligned_cols=75 Identities=25% Similarity=0.477 Sum_probs=48.3
Q ss_pred CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh-ccccceeeeecCCChHHHHHhhhcCCcEEEeCCCceEEEEE
Q psy18032 157 SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV 235 (333)
Q Consensus 157 ~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~-~~~~~~~~l~~sAT~~~~v~~l~~~~~i~~~t~~~i~~~~~ 235 (333)
.++++|.||.|-+....+.. +..+.. +-+.++.+..++.........+. ..+|+++||||+.|++.
T Consensus 93 ~~q~~Iv~PTREiaVQI~~t------------v~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~e 159 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKET------------VRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVE 159 (980)
T ss_pred cceeEEEecchhhhhHHHHH------------HHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHH
Confidence 58999999999888776554 333332 23356666666655555555543 45799999999887775
Q ss_pred ecchhhhhH
Q psy18032 236 EMELKLSSI 244 (333)
Q Consensus 236 ~~~~k~~~l 244 (333)
......+++
T Consensus 160 l~~~n~s~v 168 (980)
T KOG4284|consen 160 LGAMNMSHV 168 (980)
T ss_pred hcCCCccce
Confidence 443333333
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=86.96 E-value=1.5 Score=38.13 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.|++|+|||....--+...+.. +.+++++.-. +-..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~-----g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQ-----GKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhC-----CCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 4569999999999996444333333332 5567777654 44566777676653
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=86.94 E-value=0.23 Score=48.29 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.3
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+.+|++++++||+|+|||.
T Consensus 458 V~~g~~LLItG~sG~GKtS 476 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTS 476 (659)
T ss_pred ecCCCeEEEECCCCCchhH
Confidence 6679999999999999994
|
|
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=86.83 E-value=0.52 Score=40.79 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=18.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+++||+||||| .|...+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 578999999999 477666666554
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=86.59 E-value=4.7 Score=37.39 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=25.4
Q ss_pred cHHHHhHHHHHhcC--C---cEEEECCCCcHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVLEG--R---DVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g--~---d~l~~a~TGsGKT~~~~l~ 94 (333)
+|+|...+..+..- + -.++.||.|.||+..+..-
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~ 41 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHL 41 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHH
Confidence 67888888876653 2 4889999999999655433
|
|
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=86.57 E-value=3.4 Score=40.03 Aligned_cols=75 Identities=16% Similarity=0.107 Sum_probs=47.7
Q ss_pred CCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
+.|..-+|-|-+-...+.. +-+.++.+|+|+|||.+.+--++..-...+ ....+.++-+-|..=+......++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p-~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYP-DEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCC-cccceEEEecCcchHHHHHHHHHHHH
Confidence 3566677888766555444 346999999999999876654444433322 23456777776665555555555554
|
|
| >KOG1806|consensus | Back alignment and domain information |
|---|
Probab=86.52 E-value=1.1 Score=46.47 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=54.4
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
++-.+||-|.++|..-..-.++.+.+|+|+|||-..+= ++..+..+ ...++++|++.+..-.+|.++.+.+.
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn--~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN--SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhc--CCCcceEEEEecccchhHHHHHHHhc
Confidence 34457899999988877778999999999999965442 33333332 23568999999999999998888763
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=86.51 E-value=0.49 Score=43.48 Aligned_cols=28 Identities=29% Similarity=0.540 Sum_probs=20.3
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
+.|+-+|+.+|+|||||+.+ +.+...+-
T Consensus 63 ~aGrgiLi~GppgTGKTAlA-~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALA-MGIARELG 90 (450)
T ss_pred ccccEEEEECCCCCcHHHHH-HHHHHHhC
Confidence 45788999999999999644 34444443
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=86.48 E-value=0.4 Score=37.87 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=13.5
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
++++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5899999999999543
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=86.44 E-value=3.6 Score=39.89 Aligned_cols=75 Identities=19% Similarity=0.305 Sum_probs=57.6
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCC-CcHH--HHHHHHHHHHHhhhhcc--------------------------cCCc
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMART-GSGK--TACFLIPMLEKLKTHAA--------------------------TSGV 108 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~T-GsGK--T~~~~l~~l~~l~~~~~--------------------------~~~~ 108 (333)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-.|++-+++++.+... -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 45799999999999999997654332 3444 56799999998755210 1158
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 109 RALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
++||++|+|+-|-.+.+.+..+..
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~ 318 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLS 318 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhc
Confidence 999999999999999999998743
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=86.39 E-value=3.7 Score=41.65 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=65.0
Q ss_pred CCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 56 GYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|+. +-++|.-.+.-+. .+-+.|+.-.-|-||| |-+++.+..+.... ..| .-|||||+-.|-+ +++++.
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g-~~g-pHLVVvPsSTleN----WlrEf~ 468 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIG-NPG-PHLVVVPSSTLEN----WLREFA 468 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcC-CCC-CcEEEecchhHHH----HHHHHH
Confidence 454 6778877665432 2457788888999999 34444444444322 234 5899999988754 344443
Q ss_pred c-cCCceEEEEECCcchHHHHHHhh-C---CCCEEEECch
Q psy18032 132 K-FTKLQSTCLLGGDSMDNQFARLH-A---SPDIVVATPG 166 (333)
Q Consensus 132 ~-~~~~~~~~~~g~~~~~~~~~~l~-~---~~~IlI~TP~ 166 (333)
+ ++.+++...+|......+.+... . ..+||++|-.
T Consensus 469 kwCPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~ 508 (941)
T KOG0389|consen 469 KWCPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYN 508 (941)
T ss_pred HhCCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEee
Confidence 3 35788888888876555444332 2 4899998854
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=86.24 E-value=1.1 Score=42.63 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.3
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||||+|||..+-
T Consensus 117 ~~iLL~GP~GsGKT~lAr 134 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQ 134 (413)
T ss_pred ceEEEECCCCcCHHHHHH
Confidence 469999999999997554
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=86.23 E-value=0.52 Score=39.37 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=14.9
Q ss_pred CCcEEEECCCCcHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~ 94 (333)
...++++||.|||||..|..-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L 23 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQL 23 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 457999999999999766543
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PHA02535 P terminase ATPase subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.22 E-value=5.3 Score=39.51 Aligned_cols=86 Identities=15% Similarity=0.110 Sum_probs=63.7
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++++-.+.|.+.-.+.+.++|...+..-...+.-++.-.--+|||..|..-++..... .|...++|+|+++.+.+
T Consensus 122 ~~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~----~G~nqiflSas~~QA~~ 197 (581)
T PHA02535 122 DISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALL----TGRNQIFLSASKAQAHV 197 (581)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHh----cCCceEEECCCHHHHHH
Confidence 36666666777665678999999998763334556666667789999888777765554 25578999999999999
Q ss_pred HHHHHHHHhc
Q psy18032 123 TFKFVKELGK 132 (333)
Q Consensus 123 ~~~~~~~~~~ 132 (333)
..+.+..+++
T Consensus 198 f~~yi~~~a~ 207 (581)
T PHA02535 198 FKQYIIAFAR 207 (581)
T ss_pred HHHHHHHHHH
Confidence 8887777754
|
|
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=3.6 Score=41.86 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=59.0
Q ss_pred HHHhCCCCCCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 51 GVLKRGYKIPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 51 ~l~~~g~~~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+.+.....+..-|.+.+..++... -+++.|.-|=|||.+.-+.+....... . ..+++|.+|+.+-++.+++.+.
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~--~-~~~iiVTAP~~~nv~~Lf~fa~ 282 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA--G-SVRIIVTAPTPANVQTLFEFAG 282 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc--C-CceEEEeCCCHHHHHHHHHHHH
Confidence 3555555556666666777777754 489999999999999988874443331 1 4589999999999998888777
Q ss_pred HHhccCC
Q psy18032 129 ELGKFTK 135 (333)
Q Consensus 129 ~~~~~~~ 135 (333)
+-....|
T Consensus 283 ~~l~~lg 289 (758)
T COG1444 283 KGLEFLG 289 (758)
T ss_pred HhHHHhC
Confidence 6544454
|
|
| >KOG0745|consensus | Back alignment and domain information |
|---|
Probab=86.19 E-value=0.48 Score=44.67 Aligned_cols=50 Identities=24% Similarity=0.162 Sum_probs=29.5
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHH----HHHHHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA----LQTFKFVKELG 131 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~----~q~~~~~~~~~ 131 (333)
-|+|+.+|||||||+.+. -|.++.. -|.+|-=|.|..-| .++...+.++.
T Consensus 227 SNvLllGPtGsGKTllaq--TLAr~ld-----VPfaIcDcTtLTQAGYVGeDVEsvi~KLl 280 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQ--TLARVLD-----VPFAICDCTTLTQAGYVGEDVESVIQKLL 280 (564)
T ss_pred ccEEEECCCCCchhHHHH--HHHHHhC-----CCeEEecccchhhcccccccHHHHHHHHH
Confidence 479999999999997554 3344433 34555444444332 34444555544
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.2 Score=42.67 Aligned_cols=71 Identities=11% Similarity=0.170 Sum_probs=54.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+..+||.++|+..+.++++.+.. .++.+...+|+.+.+++...+. +..+|||+| ..+.. .++..++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~----~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT-----~a~~~-GID~p~v 293 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLES----QGISALAYHAGLSNKVRAENQEDFLYDDVKVMVAT-----NAFGM-GIDKPNV 293 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHh----CCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEe-----chhhc-cCcCCCC
Confidence 45789999999999999998876 4788899999988766544433 358999999 44443 3678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 294 ~~VI~ 298 (591)
T TIGR01389 294 RFVIH 298 (591)
T ss_pred CEEEE
Confidence 88875
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK13700 conjugal transfer protein TraD; Provisional | Back alignment and domain information |
|---|
Probab=85.97 E-value=0.86 Score=46.03 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
.++.+.+++.|-..+-.+=---+|.-.+.+++++.|.||||||.+. .-++..+.. +|-++||.=|+-+.+..-|
T Consensus 157 ~~l~k~lk~~~~~s~i~I~gvPip~~~E~~H~li~GttGSGKS~~i-~~LL~~ir~----RGdrAIIyD~~GeFv~~FY 230 (732)
T PRK13700 157 KDVARMLKKDGKDSDIRIGDLPIIRDSEIQNFCLHGTVGAGKSEVI-RRLANYARQ----RGDMVVIYDRSGEFVKSYY 230 (732)
T ss_pred HHHHHHHHhcCCCCCeeEccccCCcchhhcceEEeCCCCCCHHHHH-HHHHHHHHH----cCCeEEEEeCCCchHHHhc
Confidence 5666777776544333332222333445689999999999999743 455555443 3456666666666655433
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=85.81 E-value=1.2 Score=38.24 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=24.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
|.-+++.|++|+|||...+--+.+... .+..++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 355899999999999655444433322 255788874
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=85.79 E-value=6.7 Score=36.23 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHHHHHHHHhhhhcc----------------cCCceEEEEccc
Q psy18032 60 PTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFLIPMLEKLKTHAA----------------TSGVRALILSPT 116 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~l~~l~~l~~~~~----------------~~~~~~lil~Pt 116 (333)
.+|+|+..|..+.+ |+ -.++.||.|+||+..+..-+-..+...+. ...|-..++.|.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPE 82 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 56788888877654 33 48899999999996544332222221111 124566777775
Q ss_pred HH----HHHHHHHHHHHHhc---cCCceEEEEECCcchHHH-----HHHhhC---CCCEEEEC--chHHHHHHHh
Q psy18032 117 RE----LALQTFKFVKELGK---FTKLQSTCLLGGDSMDNQ-----FARLHA---SPDIVVAT--PGRFLHIVVE 174 (333)
Q Consensus 117 ~~----L~~q~~~~~~~~~~---~~~~~~~~~~g~~~~~~~-----~~~l~~---~~~IlI~T--P~rll~~l~~ 174 (333)
.. -+.|+.+..+.+.. ..+.+|+.+..-+..... .+.+.+ +.-++..| |++++.-+.+
T Consensus 83 ~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 83 KGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 31 23344443333322 235677777765544332 222333 23344444 5677765553
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=85.72 E-value=1.2 Score=39.50 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=33.1
Q ss_pred HHHHHhcC-----CcEEEECCCCcHHHH-HHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 67 TIPLVLEG-----RDVVAMARTGSGKTA-CFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 67 ~i~~i~~g-----~d~l~~a~TGsGKT~-~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.+..++.| .=+=++|+.|||||- |..+.+-..+.......+.+++||.-...+-.+
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~ 87 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPE 87 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHH
Confidence 45556654 236689999999994 444444433333222235689999766554443
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD | Back alignment and domain information |
|---|
Probab=85.68 E-value=0.82 Score=45.39 Aligned_cols=42 Identities=26% Similarity=0.388 Sum_probs=26.3
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
...+++++.|+||||||. ++..++..+.. .+.+++|+=|.-+
T Consensus 174 ~e~~h~li~G~tGsGKs~-~i~~ll~~~~~----~g~~~ii~D~~g~ 215 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSV-AIRKLLRWIRQ----RGDRAIIYDKGCT 215 (566)
T ss_pred ccccceEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEECCCC
Confidence 345789999999999995 34445555433 1334555555444
|
The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM). |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.66 E-value=0.55 Score=45.00 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=31.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|++++=-+..++.+++. .+..|.-+..-- +...+.+++.||+|+|||+.+-
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~g---i~~p~gVLL~GPPGTGKT~LAr 235 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIG---IKPPKGVILYGPPGTGKTLLAK 235 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCcEEEEECCCCCCHHHHHH
Confidence 45567888886444444444432 122211111111 2345679999999999997554
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=85.65 E-value=1.1 Score=38.94 Aligned_cols=39 Identities=31% Similarity=0.277 Sum_probs=24.8
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
..|.-+++.|++|+|||...+--+.+.+.. .+..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEe
Confidence 345679999999999996444333333322 145677776
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=1.9 Score=39.99 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=24.4
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
+.+.|++|||||...+ +.+-..+.......+.+++||....
T Consensus 129 tEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 129 TEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred EEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 7799999999995433 3332322211111235889988744
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=85.61 E-value=2.5 Score=37.38 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=23.9
Q ss_pred CcHHHHhHHHHHhc----CC-cEEEECCCCcHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLE----GR-DVVAMARTGSGKTACFL 92 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~-d~l~~a~TGsGKT~~~~ 92 (333)
+++.+.+++..+.. +. .+++.||+|+|||....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 56677777776542 33 58899999999996544
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=85.38 E-value=4.9 Score=33.18 Aligned_cols=44 Identities=11% Similarity=0.115 Sum_probs=25.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
-+++.|++|||||..+.-- .... +...++++.....-.+..+.+
T Consensus 3 ~ili~G~~~sGKS~~a~~l-~~~~-------~~~~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 3 LILVTGGARSGKSRFAERL-AAQS-------GLQVLYIATAQPFDDEMAARI 46 (170)
T ss_pred EEEEECCCCccHHHHHHHH-HHHc-------CCCcEeCcCCCCChHHHHHHH
Confidence 5899999999999644322 2221 224566665554444444444
|
|
| >TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.7 Score=39.77 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=41.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH-HHHHHHHHHHHHhc
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE-LALQTFKFVKELGK 132 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~ 132 (333)
.++.|+.|||||.+..+-++..+... ..+.+++++-|+.. +-.-++..+.....
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~ 58 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLS 58 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHH
Confidence 57899999999999888888877763 13568999999988 66666777775433
|
This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354. |
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=85.30 E-value=3.3 Score=47.25 Aligned_cols=63 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCcHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+++-|.+++..++...+ .+++++.|+|||...- .++..+.. .|.++++++||-.-+....+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~-~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQ-LLLHLASE----QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHH-HHHHHHHh----cCCeEEEEeCCHHHHHHHHHH
Confidence 388999999999988754 9999999999995322 33333332 377899999999877776654
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown | Back alignment and domain information |
|---|
Probab=85.18 E-value=1.3 Score=38.25 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=31.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
++.+.|.|.||||||.. +-.++..+.. ..+..++|+=|.-|-+...
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~~---~~~~~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELLK---KKGAKVIIFDPHGEYASLF 68 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHHh---cCCCCEEEEcCCCcchhhh
Confidence 47899999999999954 3344455542 2356788888877765543
|
It contains several conserved aspartates and histidines that could be metal ligands. |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=85.17 E-value=0.56 Score=35.93 Aligned_cols=16 Identities=25% Similarity=0.387 Sum_probs=13.0
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.|++|||||...-
T Consensus 2 I~I~G~~gsGKST~a~ 17 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAK 17 (121)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5799999999996433
|
... |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=85.15 E-value=0.63 Score=35.98 Aligned_cols=16 Identities=25% Similarity=0.357 Sum_probs=13.2
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.||+|+|||...-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 5899999999996443
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.9 Score=39.57 Aligned_cols=43 Identities=28% Similarity=0.304 Sum_probs=29.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+-+.+.+|+|||||...+-.+.+... .+..++++..-..+-.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~-----~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 97 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEcccchhHH
Confidence 456899999999999755544444332 2567888876655544
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=85.03 E-value=1.4 Score=35.99 Aligned_cols=51 Identities=25% Similarity=0.421 Sum_probs=39.1
Q ss_pred HHHHHHHHhCCCCC-----CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 46 FEVLKGVLKRGYKI-----PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 46 ~~l~~~l~~~g~~~-----~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+++++..+++||+. -+....+.+...++++-++++|++|.|||. +++.+..
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSS-----LiN~L~~ 57 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSS-----LINALLP 57 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHH-----HHHHHHT
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHH-----HHHHHHh
Confidence 45677788888862 245667778888889999999999999995 5565554
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=84.83 E-value=1.4 Score=38.05 Aligned_cols=38 Identities=26% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
|.-+++.|++|+|||...+--+.+.+.. +.+++++.-.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~-----~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKN-----GKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEECC
Confidence 4568999999999996554444443332 4567777544
|
|
| >PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional | Back alignment and domain information |
|---|
Probab=84.76 E-value=0.64 Score=42.16 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.1
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
=+++.||||||||..++
T Consensus 6 ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 6 IVFIFGPTAVGKSNILF 22 (300)
T ss_pred EEEEECCCccCHHHHHH
Confidence 38899999999996544
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=84.72 E-value=0.65 Score=45.31 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=31.5
Q ss_pred cCCCcccccC-CCHHHHHHHHh--CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFG-LGFEVLKGVLK--RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~-l~~~l~~~l~~--~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|++++ +++.+.+.... ..+..|..+...-+ ...+.+++.||+|+|||...
T Consensus 176 ~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl---~~p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 176 VPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDL---KPPKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccC---CCCcceEEECCCCCcHHHHH
Confidence 3456889987 55554433322 12333322222222 12467999999999999743
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=84.65 E-value=3.1 Score=34.66 Aligned_cols=58 Identities=21% Similarity=0.134 Sum_probs=32.6
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-----ccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHA-----ATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|.=+++.||+|+|||...+--+...+...+ ...+.+++++..-.. ..++.+.+..+.
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 4566999999999999644433333332100 113456777766555 667777777654
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=84.65 E-value=1.2 Score=37.96 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=16.8
Q ss_pred hHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 66 KTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 66 ~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+++.. +..+.++++.+|.|+|||..+-
T Consensus 13 rAL~iAAaG~h~lLl~GppGtGKTmlA~ 40 (206)
T PF01078_consen 13 RALEIAAAGGHHLLLIGPPGTGKTMLAR 40 (206)
T ss_dssp HHHHHHHHCC--EEEES-CCCTHHHHHH
T ss_pred HHHHHHHcCCCCeEEECCCCCCHHHHHH
Confidence 34444 3346789999999999996443
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=84.54 E-value=2 Score=39.40 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=30.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+=+.+.+|+|||||...+-.+.+... .+..++++.+-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~-----~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK-----LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEECccccHHH
Confidence 456899999999999655544444332 2668999987766554
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >KOG0733|consensus | Back alignment and domain information |
|---|
Probab=84.40 E-value=0.79 Score=45.10 Aligned_cols=54 Identities=20% Similarity=0.082 Sum_probs=30.7
Q ss_pred CCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 36 GGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+|++.|--+++...|.-. .+++|..++.--+ ..-..+|++||+|+|||+.+=
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi---~~PsGvLL~GPPGCGKTLlAK 563 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGI---DAPSGVLLCGPPGCGKTLLAK 563 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCC---CCCCceEEeCCCCccHHHHHH
Confidence 35777777555555444321 2333322222211 113469999999999998544
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=1.1 Score=43.40 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=23.4
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+=..++-+++.|.++++.||+|+|||..+-
T Consensus 28 vI~lll~aalag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 28 AIRLCLLAALSGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred HHHHHHHHHccCCCEEEECCCChhHHHHHH
Confidence 334455567789999999999999997653
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=84.17 E-value=0.75 Score=44.97 Aligned_cols=55 Identities=18% Similarity=0.113 Sum_probs=34.8
Q ss_pred cCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++.-.++..+.+.+. -+..|..++... ....+++++.||+|+|||...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 5677999998777776666542 123333222211 112357999999999999654
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=84.17 E-value=1.5 Score=37.12 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=16.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
.++++.|+||||||.+...-+.+.+.
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 48999999999999765544444433
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=84.10 E-value=0.65 Score=43.08 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=21.8
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
+|+-+|+.+|+|||||+.+ +++.+.+-. +-|.+-+..
T Consensus 49 aGr~iLiaGppGtGKTAlA-~~ia~eLG~----~~PF~~isg 85 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALA-MAIAKELGE----DVPFVSISG 85 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHH-HHHHHHCTT----TS-EEEEEG
T ss_pred cCcEEEEeCCCCCCchHHH-HHHHHHhCC----CCCeeEccc
Confidence 4678999999999999644 344444443 345555443
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=83.96 E-value=4.1 Score=43.32 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=82.0
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHH---HHHHHHHHHHhhhhcccC
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKT---ACFLIPMLEKLKTHAATS 106 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT---~~~~l~~l~~l~~~~~~~ 106 (333)
..-..|..+...|..+.. ..++.+|.+.+.-++ ++.|+|+.---|-||| .+|+-.+.+...- .
T Consensus 351 ~~rp~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~----~ 420 (1373)
T KOG0384|consen 351 PQRPRFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI----H 420 (1373)
T ss_pred ccchhHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc----c
Confidence 444677777766665543 568888888776654 5789999999999998 3555555544322 3
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----C-----CCCEEEECchHHHH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----A-----SPDIVVATPGRFLH 170 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~-----~~~IlI~TP~rll~ 170 (333)
|| .||++|...+..= .+.+.. .++..+++.+|.....+.++... . ..++|++|-+.++.
T Consensus 421 gp-flvvvplst~~~W-~~ef~~---w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk 488 (1373)
T KOG0384|consen 421 GP-FLVVVPLSTITAW-EREFET---WTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK 488 (1373)
T ss_pred CC-eEEEeehhhhHHH-HHHHHH---HhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc
Confidence 54 7888998776543 233444 34788888888887665554421 1 37899999888763
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.88 E-value=1 Score=42.97 Aligned_cols=26 Identities=19% Similarity=0.456 Sum_probs=19.3
Q ss_pred hHHHHH-hcCCcEEEECCCCcHHHHHH
Q psy18032 66 KTIPLV-LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i-~~g~d~l~~a~TGsGKT~~~ 91 (333)
+++... .-|+|+++.+|+|||||+.+
T Consensus 189 rAleiAAAGgHnLl~~GpPGtGKTmla 215 (490)
T COG0606 189 RALEIAAAGGHNLLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHHHHHhcCCcEEEecCCCCchHHhh
Confidence 344443 33689999999999999754
|
|
| >cd01363 Motor_domain Myosin and Kinesin motor domain | Back alignment and domain information |
|---|
Probab=83.73 E-value=0.73 Score=38.65 Aligned_cols=25 Identities=36% Similarity=0.543 Sum_probs=21.3
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTAC 90 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~ 90 (333)
.++..+++|.| +++.|+||||||..
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~T 40 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYT 40 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEe
Confidence 67788889987 88999999999954
|
These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. |
| >TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family | Back alignment and domain information |
|---|
Probab=83.36 E-value=1.7 Score=45.84 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
-|.+|.|+||||||.....-+.+.+.. .+++++|+=|-++
T Consensus 476 ~n~~I~G~TGSGKS~l~~~li~q~~~~----~~~~v~IiD~g~s 515 (893)
T TIGR03744 476 AHLLILGPTGAGKSATLTNLLMQVMAV----HRPRLFIVEAGNS 515 (893)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHHHHh----cCCEEEEEcCCCC
Confidence 479999999999997665544444432 2568888888776
|
Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=83.04 E-value=0.77 Score=35.28 Aligned_cols=16 Identities=31% Similarity=0.252 Sum_probs=13.2
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.|++|||||...-
T Consensus 1 I~i~G~~GsGKtTia~ 16 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK 16 (129)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred CEEECCCCCCHHHHHH
Confidence 5789999999997544
|
... |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=82.86 E-value=0.78 Score=36.20 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=12.3
Q ss_pred EEEECCCCcHHHHH
Q psy18032 77 VVAMARTGSGKTAC 90 (333)
Q Consensus 77 ~l~~a~TGsGKT~~ 90 (333)
++++|++|||||..
T Consensus 2 ii~~G~pgsGKSt~ 15 (143)
T PF13671_consen 2 IILCGPPGSGKSTL 15 (143)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999999964
|
... |
| >COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.85 E-value=8.5 Score=35.27 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=50.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEE-ECCcchHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCL-LGGDSMDNQFAR 153 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 153 (333)
++++|-.|+|||....=- .+... ..|.++++.+ .-|+=|.+|.+.+-+ ..|+.++.- .|+.+..-....
T Consensus 142 il~vGVNG~GKTTTIaKL--A~~l~---~~g~~VllaA~DTFRAaAiEQL~~w~e---r~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKL--AKYLK---QQGKSVLLAAGDTFRAAAIEQLEVWGE---RLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEecCCCchHhHHHHH--HHHHH---HCCCeEEEEecchHHHHHHHHHHHHHH---HhCCeEEccCCCCCcHHHHHHH
Confidence 889999999999754422 12222 2355666665 356767666555554 467777663 455554333222
Q ss_pred ----hhCCCCEE-EECchHHH
Q psy18032 154 ----LHASPDIV-VATPGRFL 169 (333)
Q Consensus 154 ----l~~~~~Il-I~TP~rll 169 (333)
..++.+++ |=|.+||.
T Consensus 214 i~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 214 IQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHHHHHcCCCEEEEeCccccc
Confidence 33466655 67999986
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.6 Score=39.83 Aligned_cols=43 Identities=16% Similarity=0.112 Sum_probs=24.8
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhh-cccCCceEEEEcccH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTH-AATSGVRALILSPTR 117 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~~lil~Pt~ 117 (333)
.=+.+.||+|+|||...+--+.+..... ....+..+++|.-..
T Consensus 96 ~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 96 AITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 4478999999999954443333332211 111133788888443
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.7 Score=36.72 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=22.4
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
..++++||+|+|||.... .+.+.+.. .+.+++++.-
T Consensus 46 ~~l~l~Gp~G~GKThLl~-a~~~~~~~----~~~~v~y~~~ 81 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH-AACAELSQ----RGRAVGYVPL 81 (235)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh----CCCeEEEEEH
Confidence 579999999999995443 22333332 2445666544
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=82.75 E-value=0.85 Score=37.79 Aligned_cols=15 Identities=27% Similarity=0.439 Sum_probs=13.2
Q ss_pred cEEEECCCCcHHHHH
Q psy18032 76 DVVAMARTGSGKTAC 90 (333)
Q Consensus 76 d~l~~a~TGsGKT~~ 90 (333)
++++.+|||+|||..
T Consensus 5 ~~ll~GpsGvGKT~l 19 (171)
T PF07724_consen 5 NFLLAGPSGVGKTEL 19 (171)
T ss_dssp EEEEESSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 689999999999953
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=82.63 E-value=2.6 Score=39.12 Aligned_cols=43 Identities=30% Similarity=0.306 Sum_probs=31.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
|+=+.+.+|+|||||...+-.+.+... .+..++++..-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 456889999999999766655554433 2668888887776664
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=82.63 E-value=2.1 Score=39.24 Aligned_cols=55 Identities=7% Similarity=0.003 Sum_probs=30.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHH-HhhhhcccCCceEEEEcccHHH-HHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLE-KLKTHAATSGVRALILSPTREL-ALQTFKFVKE 129 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~-~l~~~~~~~~~~~lil~Pt~~L-~~q~~~~~~~ 129 (333)
.=+.+.|++|+|||...+-.++. .+.......+.+++|+.--..+ ..++.+..+.
T Consensus 97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~ 153 (313)
T TIGR02238 97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAER 153 (313)
T ss_pred eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 34789999999999544433332 2221111224588998855433 3444444444
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.53 E-value=2.4 Score=45.91 Aligned_cols=58 Identities=21% Similarity=0.237 Sum_probs=45.9
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
-.+.+++|.|..|||||.+-.--++..+....+-.-.+.|+++.|++=+.++..++..
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 3467999999999999988887777777763211234799999999999999888875
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=82.34 E-value=2.3 Score=36.70 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=15.2
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..++++||+|+|||....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999995433
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=82.34 E-value=3.3 Score=35.74 Aligned_cols=48 Identities=21% Similarity=0.332 Sum_probs=29.0
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+++.||+|+|||- .+-++.+.+... .++.+++++. ..+......+.++
T Consensus 37 l~l~G~~G~GKTH-LL~Ai~~~~~~~--~~~~~v~y~~-~~~f~~~~~~~~~ 84 (219)
T PF00308_consen 37 LFLYGPSGLGKTH-LLQAIANEAQKQ--HPGKRVVYLS-AEEFIREFADALR 84 (219)
T ss_dssp EEEEESTTSSHHH-HHHHHHHHHHHH--CTTS-EEEEE-HHHHHHHHHHHHH
T ss_pred eEEECCCCCCHHH-HHHHHHHHHHhc--cccccceeec-HHHHHHHHHHHHH
Confidence 8999999999997 344455554431 1244666654 3466665555444
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=82.16 E-value=7.2 Score=40.61 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=57.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
++.+||.+|+..-+...++.+++... .++.+..++|+.+.+++.+.+.. ...|||+| +..+ ..+++.++
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVAT-----nIAE-rgItIp~V 281 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT-----NIAE-TSLTIEGI 281 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEec-----chHh-hcccccCc
Confidence 45799999999999999998886322 47889999999998888777653 36899999 4444 34778888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 282 ~~VID 286 (819)
T TIGR01970 282 RVVID 286 (819)
T ss_pred eEEEE
Confidence 88885
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR02746 TraC-F-type type-IV secretion system protein TraC | Back alignment and domain information |
|---|
Probab=82.11 E-value=3.6 Score=42.77 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=28.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.++++.|+||||||.....-+.+.+. .+.+++|+=|..+.
T Consensus 431 ~n~~I~G~tGsGKS~~~~~l~~~~~~-----~g~~v~iiD~~~sy 470 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQELIVDNLS-----RGGKVWVIDVGRSY 470 (797)
T ss_pred cceEEEcCCCCCHHHHHHHHHHHHHh-----CCCEEEEEeCCCCH
Confidence 47999999999999766543333332 26788998887654
|
The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=82.10 E-value=2.6 Score=33.79 Aligned_cols=45 Identities=13% Similarity=0.206 Sum_probs=25.1
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCC-ceEEEEcccHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSG-VRALILSPTRELALQ 122 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~~lil~Pt~~L~~q 122 (333)
+++.|++|+|||... --+...+........ ...++..+.+....+
T Consensus 3 l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISDS 48 (166)
T ss_pred EEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhhc
Confidence 689999999999644 344444444221111 234555555555443
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=82.08 E-value=0.96 Score=40.78 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.9
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999997663
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=81.91 E-value=0.96 Score=35.76 Aligned_cols=43 Identities=28% Similarity=0.330 Sum_probs=28.5
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
.|.-+++.|+.|+|||. +.-.++..+.. ..-|-+||-.|++..
T Consensus 21 ~~~~i~l~G~lGaGKTt-l~~~l~~~lg~-------~~~v~SPTf~lv~~Y 63 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTT-LVQGLLQGLGI-------QGNVTSPTFTLVNEY 63 (133)
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHcCC-------CCcccCCCeeeeeec
Confidence 45568899999999995 44444444322 223778988776653
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=81.86 E-value=3.2 Score=37.44 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.9
Q ss_pred CCcEEEECCCCcHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~ 94 (333)
|.++++.||+|+|||..+-.-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999766544
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=81.82 E-value=6.8 Score=41.24 Aligned_cols=75 Identities=13% Similarity=0.088 Sum_probs=54.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc--cCCceEEEEECCcchHHHHHH---hhC-CCCEEEECchHHHHHHHhcccccc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK--FTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLS 180 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlI~TP~rll~~l~~~~~~~~ 180 (333)
+.++||.++|+..|..++..++.... ..+..+...+|+.+.+++... +++ ..+|||||. .+.. .+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs-----~Le~-GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-----SLEL-GIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hHHh-cCCCC
Confidence 45799999999999999999887432 134678888999887665433 333 489999995 3443 46777
Q ss_pred CchhhHH
Q psy18032 181 SIQYTFK 187 (333)
Q Consensus 181 ~l~~lV~ 187 (333)
++.++|.
T Consensus 358 ~Vd~VI~ 364 (876)
T PRK13767 358 YIDLVVL 364 (876)
T ss_pred CCcEEEE
Confidence 7777774
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=81.82 E-value=0.93 Score=38.22 Aligned_cols=32 Identities=50% Similarity=0.784 Sum_probs=25.3
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
+.++.++.-.+.||+|||.++++|+++++...
T Consensus 33 ~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~ 64 (203)
T cd00268 33 LLSGRDVIGQAQTGSGKTAAFLIPILEKLDPS 64 (203)
T ss_pred HhcCCcEEEECCCCCcHHHHHHHHHHHHHHhh
Confidence 33345666778899999999999999887653
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >KOG1807|consensus | Back alignment and domain information |
|---|
Probab=81.81 E-value=5.8 Score=40.22 Aligned_cols=82 Identities=17% Similarity=0.058 Sum_probs=55.0
Q ss_pred HHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcccHHHHHHHH
Q psy18032 48 VLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPTRELALQTF 124 (333)
Q Consensus 48 l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~Pt~~L~~q~~ 124 (333)
+.+++.-. |...+...|+.|....+..+=.|+++|+|+|||++-+..+=..+..... ...-..+++|-|.--+.|..
T Consensus 365 ~~n~lePp~~g~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~l 444 (1025)
T KOG1807|consen 365 IVNALEPPGPGLVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYL 444 (1025)
T ss_pred hhhhcCCCCCCceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHH
Confidence 44444332 3334566799999999999999999999999998877665444443211 11234778887777667666
Q ss_pred HHHHH
Q psy18032 125 KFVKE 129 (333)
Q Consensus 125 ~~~~~ 129 (333)
..+..
T Consensus 445 igiy~ 449 (1025)
T KOG1807|consen 445 IGIYY 449 (1025)
T ss_pred HHHHh
Confidence 55554
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=81.78 E-value=2.1 Score=37.13 Aligned_cols=35 Identities=11% Similarity=0.038 Sum_probs=21.4
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.+++.||+|+|||..... +.+.+.. ++..++++.-
T Consensus 41 ~l~l~G~~G~GKThL~~a-i~~~~~~----~~~~~~y~~~ 75 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKA-VSNHYLL----NQRTAIYIPL 75 (229)
T ss_pred eEEEECCCCCCHHHHHHH-HHHHHHH----cCCCeEEeeH
Confidence 479999999999953332 3333332 2445666554
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=81.72 E-value=2.4 Score=41.55 Aligned_cols=52 Identities=23% Similarity=0.259 Sum_probs=34.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|.-+++.+++|+|||....--+.+.+.. +-++++++- .+-..++.+.+..++
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~-----g~~~~yis~-e~~~~~i~~~~~~~g 324 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRR-----GERCLLFAF-EESRAQLIRNARSWG 324 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhC-----CCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 4668999999999996554444444332 556777754 455777777776653
|
|
| >COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.67 E-value=3.9 Score=41.47 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+++-|.+++... .-.++|.|..|||||-+-.--+...+....- ...+.+.++=|+.-|.++.+++..+..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v-~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGV-DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCc-ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788999988766 4579999999999998777666666655211 123689999999999999999998754
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=81.58 E-value=15 Score=39.37 Aligned_cols=106 Identities=16% Similarity=0.151 Sum_probs=68.1
Q ss_pred cHHHHhHHHH--Hhc--CCcEEEECCCCcHHHHHHHHHHHHHhhhhc-c--c-CCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 61 TPIQRKTIPL--VLE--GRDVVAMARTGSGKTACFLIPMLEKLKTHA-A--T-SGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 61 ~~~Q~~~i~~--i~~--g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~--~-~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+.+|++.+.- +++ +-+-|+|-.-|-|||+-.+--+........ . . ...-.||+||+. |+-.....+.+|+.
T Consensus 977 RkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtGHW~~E~~kf~p 1055 (1549)
T KOG0392|consen 977 RKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTGHWKSEVKKFFP 1055 (1549)
T ss_pred HHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhhHHHHHHHHhcc
Confidence 4467765543 232 347899999999999755444443333321 1 1 122389999985 56666777777765
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHH
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL 169 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll 169 (333)
+ +++...+|+...+...+.--++.+|+|++-+-+.
T Consensus 1056 f--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~R 1090 (1549)
T KOG0392|consen 1056 F--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVR 1090 (1549)
T ss_pred h--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHH
Confidence 4 6777777777666555555556899999976654
|
|
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=81.39 E-value=0.97 Score=40.11 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=16.1
Q ss_pred CcEEEECCCCcHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~ 94 (333)
.++++.||+|+|||..+-.-
T Consensus 43 ~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 47999999999999655433
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=81.24 E-value=1.2 Score=41.60 Aligned_cols=57 Identities=16% Similarity=0.199 Sum_probs=32.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++++-.+...+.+.+. .+..|..... + -+...+.+++.||+|+|||...-
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~--~-g~~~p~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEE--V-GIEPPKGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHh--c-CCCCCceEEEECCCCCCHHHHHH
Confidence 34556788887666665555542 2222221111 0 01224679999999999996443
|
Many proteins may score above the trusted cutoff because an internal |
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=81.09 E-value=2.1 Score=33.87 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=19.1
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.++-........++++|++||||+.++-
T Consensus 12 ~~l~~~a~~~~pvli~GE~GtGK~~~A~ 39 (138)
T PF14532_consen 12 RQLERLAKSSSPVLITGEPGTGKSLLAR 39 (138)
T ss_dssp HHHHHHHCSSS-EEEECCTTSSHHHHHH
T ss_pred HHHHHHhCCCCcEEEEcCCCCCHHHHHH
Confidence 3333334456789999999999997543
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=1.1 Score=42.35 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=32.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++++--++..+.+.+. .+..|...+..- +...+.+++.||+|+|||..+-
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g---~~~p~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVG---IEPPKGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCCceEEECCCCCChHHHHH
Confidence 34456788887555555555442 222222222111 1123579999999999996543
|
|
| >PLN02165 adenylate isopentenyltransferase | Back alignment and domain information |
|---|
Probab=80.83 E-value=1.3 Score=40.73 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l 93 (333)
.|+-+++.||||||||..+..
T Consensus 42 ~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 355699999999999965543
|
|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=80.75 E-value=2.2 Score=39.12 Aligned_cols=43 Identities=14% Similarity=0.018 Sum_probs=25.3
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTR 117 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~ 117 (333)
.=+.++|++|+|||...+--+.+...... ...+..++++.--.
T Consensus 103 ~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 103 SITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45889999999999644433444332211 11134788887543
|
|
| >COG4185 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.61 E-value=0.67 Score=37.70 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=23.5
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++.+|.|||||..|....... . .+++++.+-++|.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~--------~-~~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPL--------L-PGIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhh--------c-CCeEEECHHHHhhh
Confidence 4778999999998776543332 1 14555555555544
|
|
| >PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging [] | Back alignment and domain information |
|---|
Probab=80.61 E-value=1.7 Score=39.27 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=27.1
Q ss_pred EEEECCCCcHHHHHHH-HHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL-IPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~-l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
.+|-|||||||+-..- +-..+.+.. ..-.+++|+|+...+--+...
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P----~PETVfFItP~~~mIpp~E~~ 136 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQP----PPETVFFITPQKDMIPPQEIT 136 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccC----CCCceEEECCCCCCCCHHHHH
Confidence 7889999999984111 111111222 123689999998766544433
|
During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription |
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=80.55 E-value=17 Score=39.00 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=66.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
-|-|+.---|-|||. -.+.++.++......=| --|||+||..+.+ ..-.|+++ +.++++...+|........+.-
T Consensus 635 lNGILADEmGLGKTI-QtISllAhLACeegnWG-PHLIVVpTsviLn-WEMElKRw--cPglKILTYyGs~kErkeKRqg 709 (1958)
T KOG0391|consen 635 LNGILADEMGLGKTI-QTISLLAHLACEEGNWG-PHLIVVPTSVILN-WEMELKRW--CPGLKILTYYGSHKERKEKRQG 709 (1958)
T ss_pred ccceehhhhcccchh-HHHHHHHHHHhcccCCC-CceEEeechhhhh-hhHHHhhh--CCcceEeeecCCHHHHHHHhhc
Confidence 478888889999995 55666677665444334 4789999987654 34446665 4789999999887544433333
Q ss_pred hCC---CCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 155 HAS---PDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 155 ~~~---~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+.. .|+-|++-..+..-+. .+.-++.+|+|+
T Consensus 710 W~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvL 743 (1958)
T KOG0391|consen 710 WAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVL 743 (1958)
T ss_pred ccCCCeeEEeehhhHHHHhHHH--HHHhhccceeeh
Confidence 332 4555555433332222 244567788884
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.44 E-value=1.2 Score=39.33 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=14.7
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
+|++..+|+|+|||..
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 7999999999999963
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.44 E-value=17 Score=35.81 Aligned_cols=94 Identities=22% Similarity=0.312 Sum_probs=65.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCc-HHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH-HHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGS-GKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL-QTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGs-GKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~-q~~~~~~~~~~~~~~ 136 (333)
.|-+.....+...+.||.+++.|.||| |+.+|=. +.. .+|..|++.-.-|... ++...++.. +...
T Consensus 235 ~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~q------il~----~~p~~i~l~~~~E~~~~~i~~el~~~--~~~~ 302 (588)
T COG1086 235 PPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQ------ILK----FNPKEIILFSRDEYKLYLIDMELREK--FPEL 302 (588)
T ss_pred CCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHH------HHh----cCCCEEEEecCchHHHHHHHHHHHhh--CCCc
Confidence 477777888889999999999999998 6665444 333 1455666666666554 456666663 2357
Q ss_pred eEEEEECCcchHHHHHHhhCC--CCEEEEC
Q psy18032 137 QSTCLLGGDSMDNQFARLHAS--PDIVVAT 164 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~--~~IlI~T 164 (333)
+.....|+....+.....-++ +++++=.
T Consensus 303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHA 332 (588)
T COG1086 303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHA 332 (588)
T ss_pred ceEEEecccccHHHHHHHHhcCCCceEEEh
Confidence 777888888777766666555 8888744
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=80.43 E-value=1.9 Score=42.04 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=31.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++|=-+.+.+.+.+.. ..+...+-.. +...+.+++.||+|+|||+.+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~----~~~~~~~~~~gl~~pkGILL~GPpGTGKTllA 276 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRS----TSFSKQASNYGLPTPRGLLLVGIQGTGKSLTA 276 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHH----HHhhHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 34567888876666666665420 0010111110 122367999999999999654
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=80.34 E-value=6.8 Score=36.55 Aligned_cols=61 Identities=13% Similarity=0.037 Sum_probs=45.2
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~ 175 (333)
.+.++||+++|+.-+..+++.++.. ..+..+..++|..+..++.+.. ..+|+|+| +....+
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~--~~~~~~~~l~g~~~~~~R~~~~--~~~iLVaT-----dv~~rG 331 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQ--GLGDDIGRITGFAPKKDRERAM--QFDILLGT-----STVDVG 331 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhh--CCCceEEeeecCCCHHHHHHhc--cCCEEEEe-----cHHhcc
Confidence 3568999999999999999999873 2345677778877766554332 57899999 555544
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type | Back alignment and domain information |
|---|
Probab=80.24 E-value=4.4 Score=44.00 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=43.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.++++|.|+-|||||....--++..+.... .....++|+-|+.=|.++.+++...
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~--~~~~i~~~t~t~~aa~em~~Ri~~~ 64 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV--PPSKILCLTYTKAAAAEMQNRVFDR 64 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC--CCCeEEEEecCHHHHHHHHHHHHHH
Confidence 468999999999999888777777765532 2347999999999999988777754
|
AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species. |
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=80.21 E-value=11 Score=36.35 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=28.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
..+++.||+|+|||.... ++.+.+... ..+.+++++.. ..+..+....+
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~--~~~~~v~yi~~-~~f~~~~~~~~ 179 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQN--EPDLRVMYITS-EKFLNDLVDSM 179 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHH
Confidence 359999999999996443 344444431 12345666654 45555554433
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=80.21 E-value=2.9 Score=35.86 Aligned_cols=17 Identities=35% Similarity=0.483 Sum_probs=12.8
Q ss_pred EEEECCCCcHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLI 93 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l 93 (333)
.++.||||+|||...+.
T Consensus 4 ~~i~GpT~tGKt~~ai~ 20 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIA 20 (233)
T ss_dssp EEEE-STTSSHHHHHHH
T ss_pred EEEECCCCCChhHHHHH
Confidence 57899999999975553
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=80.16 E-value=12 Score=35.67 Aligned_cols=17 Identities=24% Similarity=0.348 Sum_probs=14.7
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||..+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999996554
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=80.14 E-value=7.8 Score=35.90 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=42.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH-------HhhC-CCCEEEECc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA-------RLHA-SPDIVVATP 165 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~l~~-~~~IlI~TP 165 (333)
+.++||+++|++-+..+++.+++.+ .+..+..++|+.+..++.+ .+.+ ...|||+|.
T Consensus 222 ~~~~lVf~~t~~~~~~~~~~L~~~~--~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 222 GGKIAIIVNTVDRAQEFYQQLKENA--PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhhc--CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 5689999999999999999998743 3346888899876655432 2233 478999993
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport | Back alignment and domain information |
|---|
Probab=80.09 E-value=1.5 Score=40.36 Aligned_cols=26 Identities=38% Similarity=0.616 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++.|+||||||....
T Consensus 66 ~v~~~l~G~n~~i~ayG~tgSGKT~Tm~ 93 (335)
T PF00225_consen 66 LVDSVLDGYNATIFAYGQTGSGKTYTMF 93 (335)
T ss_dssp HHHHHHTT-EEEEEEEESTTSSHHHHHT
T ss_pred HHHHhhcCCceEEEeecccccccccccc
Confidence 3555678987 8889999999996544
|
The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K .... |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.05 E-value=2.3 Score=36.87 Aligned_cols=29 Identities=31% Similarity=0.510 Sum_probs=20.8
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
+-.|.-+.+.||+|||||. ++-++.-+..
T Consensus 28 i~~Ge~vaI~GpSGSGKST--LLniig~ld~ 56 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKST--LLNLLGGLDK 56 (226)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhcccC
Confidence 3457779999999999995 4445555554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 333 | ||||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 9e-26 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 7e-24 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 2e-22 | ||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 7e-22 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 8e-22 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 3e-21 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-21 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 2e-20 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 2e-20 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 2e-20 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 2e-20 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 2e-20 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 3e-20 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 4e-20 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 5e-20 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 4e-04 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 9e-20 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 2e-19 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 4e-19 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 1e-18 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 2e-18 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 3e-18 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 4e-18 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 4e-18 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 5e-18 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 9e-18 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 1e-17 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 5e-17 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 3e-16 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 5e-16 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 6e-16 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 7e-16 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 7e-16 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 8e-16 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 9e-16 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 3e-15 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 4e-15 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 4e-15 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 4e-15 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 5e-15 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 5e-15 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 7e-15 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-13 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 1e-13 | ||
| 3fmo_B | 300 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 1e-13 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 1e-13 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 1e-13 | ||
| 3fhc_B | 235 | Crystal Structure Of Human Dbp5 In Complex With Nup | 2e-13 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 2e-13 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 4e-10 |
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 300 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214 Length = 235 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 207 bits (528), Expect = 4e-66
Identities = 60/168 (35%), Positives = 97/168 (57%), Gaps = 4/168 (2%)
Query: 20 SSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVA 79
S + N F F L + LKG+ + Y++ T IQ++TI L L+G+DV+
Sbjct: 8 SISRLMQNYEKINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLG 67
Query: 80 MARTGSGKTACFLIPMLEKL--KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137
A+TGSGKT FL+P+LE L +T G+ LI+SPTRELA QTF+ ++++GK
Sbjct: 68 AAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFS 127
Query: 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQY 184
+ ++GG + ++ R++ + +I+V TPGR L H+ + + +Q
Sbjct: 128 AGLIIGGKDLKHEAERIN-NINILVCTPGRLLQHMDETVSFHATDLQM 174
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 3e-10
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFL 319
+ +Y VT+ TI L L+G+DV+ A+TGSGKT FL
Sbjct: 41 QEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 3e-56
Identities = 55/182 (30%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 4 KDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPI 63
+ F+ S + + ++++ F+ G+ + + + G+ PT I
Sbjct: 12 DLGTENLYFQSMEEHDSPTEASQPIVEEEETKT--FKDLGVTDVLCEACDQLGWTKPTKI 69
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123
Q + IPL L+GRD++ +A TGSGKT F +P+L L + AL+L+PTRELA Q
Sbjct: 70 QIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQ--RLFALVLTPTRELAFQI 127
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSI 182
+ + LG +QS ++GG +Q L P I++ATPGR + H+ L ++
Sbjct: 128 SEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRAL 187
Query: 183 QY 184
+Y
Sbjct: 188 KY 189
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQ 245
+ LG +QS ++GG +Q L P I++ATPGR + H+ L +++
Sbjct: 131 FEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALK 188
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 9e-08
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IPL L+GRD++ +A TGSGKT F
Sbjct: 73 AIPLALQGRDIIGLAETGSGKTGAF 97
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 2e-53
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 10/188 (5%)
Query: 2 KKKDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFG--LGFEVLKGVLKRGYKI 59
+ E + ED + S + F S + LK + + G+
Sbjct: 22 SMNNVEKPDNDEDESEVPSLPLGLTGAFEDTS-----FASLCNLVNENTLKAIKEMGFTN 76
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS--GVRALILSPTR 117
T IQ K+I +LEGRD++A A+TGSGKT FLIP +E + G LILSPTR
Sbjct: 77 MTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTR 136
Query: 118 ELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEME 176
ELA+QTF +KEL ++GG + + +L +I+VATPGR L H+
Sbjct: 137 ELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPG 196
Query: 177 LKLSSIQY 184
++Q
Sbjct: 197 FMYKNLQC 204
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-08
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 283 AKKKYVQVTD---DTIPLVLEGRDVVAMARTGSGKTACFL 319
+ + +T+ +I +LEGRD++A A+TGSGKT FL
Sbjct: 70 KEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFL 109
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 172 bits (439), Expect = 1e-52
Identities = 52/148 (35%), Positives = 88/148 (59%), Gaps = 4/148 (2%)
Query: 40 QSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL 99
Q + + +L+ +L G+++PTPIQ + IP++L GR+++A A TGSGKT F IP+L +L
Sbjct: 32 QEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQL 91
Query: 100 KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-LHASP 158
K A G RALI+SPTRELA Q + + ++ + T + + +F
Sbjct: 92 K-QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKF 150
Query: 159 DIVVATPGRFLHIVVE--MELKLSSIQY 184
DI+V TP R ++++ + + L+S+++
Sbjct: 151 DILVTTPNRLIYLLKQDPPGIDLASVEW 178
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 1e-07
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
IP++L GR+++A A TGSGKT F
Sbjct: 60 IPVMLHGRELLASAPTGSGKTLAFSI 85
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 2e-50
Identities = 64/166 (38%), Positives = 95/166 (57%), Gaps = 2/166 (1%)
Query: 19 ISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVV 78
+ S D T D G F+ F L E+L G+ + G++ P+PIQ + IP+ + GRD++
Sbjct: 3 LGSKDTRPQTDDVLNTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDIL 62
Query: 79 AMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138
A A+ G+GKTA F+IP LEK+K + ++ALI+ PTRELALQT + V+ LGK +
Sbjct: 63 ARAKNGTGKTAAFVIPTLEKVKPKL--NKIQALIMVPTRELALQTSQVVRTLGKHCGISC 120
Query: 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG ++ + RL+ + I+V TPGR L + LS
Sbjct: 121 MVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQL 246
V+ LGK + GG ++ + RL+ + I+V TPGR L + LS L
Sbjct: 109 VRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IP+ + GRD++A A+ G+GKTA F
Sbjct: 51 AIPVAITGRDILARAKNGTGKTAAF 75
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 2e-49
Identities = 58/147 (39%), Positives = 80/147 (54%), Gaps = 3/147 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L+ + RG PTPIQ +PL LEG+D++ ARTG+GKT F +P+ E+
Sbjct: 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAER 62
Query: 99 LKTHAATS-GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
L RAL+L+PTRELALQ + + L+ + GG Q L
Sbjct: 63 LAPSQERGRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRG 120
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQY 184
D VVATPGR L + + L LS ++
Sbjct: 121 ADAVVATPGRALDYLRQGVLDLSRVEV 147
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 1e-07
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
+PL LEG+D++ ARTG+GKT F
Sbjct: 31 ALPLALEGKDLIGQARTGTGKTLAF 55
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 4e-49
Identities = 51/184 (27%), Positives = 95/184 (51%), Gaps = 7/184 (3%)
Query: 1 MKKKDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIP 60
M ++ +T + + ++ + F + GL ++L+G+ G++ P
Sbjct: 6 MATSGSARKRLLKEEDMTKVEFETS-----EEVDVTPTFDTMGLREDLLRGIYAYGFEKP 60
Query: 61 TPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELA 120
+ IQ++ I +++GRDV+A +++G+GKTA F I +L+ L +ALIL+PTRELA
Sbjct: 61 SAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAPTRELA 118
Query: 121 LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLS 180
+Q K + LG + +Q +GG ++ +L +V TPGR ++ L+
Sbjct: 119 VQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTR 178
Query: 181 SIQY 184
+I+
Sbjct: 179 AIKM 182
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 182 IQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 241
+Q K + LG + +Q +GG ++ +L +V TPGR ++ L+
Sbjct: 119 VQ-IQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRT 177
Query: 242 SSIQL 246
+I++
Sbjct: 178 RAIKM 182
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
I +++GRDV+A +++G+GKTA F
Sbjct: 67 AIKQIIKGRDVIAQSQSGTGKTATF 91
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 3e-48
Identities = 51/150 (34%), Positives = 90/150 (60%), Gaps = 3/150 (2%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
G F+ + L E+L G+ + G++ P+PIQ ++IP+ L GRD++A A+ G+GK+ +LIP+
Sbjct: 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL 61
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARL 154
LE+L ++A+++ PTRELALQ + ++ K + GG ++ + RL
Sbjct: 62 LERLDLK--KDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +V+ATPGR L ++ + K+ +Q
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQM 149
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
+IP+ L GRD++A A+ G+GK+ +
Sbjct: 33 SIPIALSGRDILARAKNGTGKSGAY 57
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 189 VKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 245
++ K + GG ++ + RL + +V+ATPGR L ++ + K+ +Q
Sbjct: 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQ 148
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 4e-48
Identities = 53/153 (34%), Positives = 80/153 (52%), Gaps = 7/153 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L + +L Y+ PTPIQ+ IP +LE RD++A A+TGSGKTA FLIP++
Sbjct: 25 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 84
Query: 99 LKTHAATS-------GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + LIL+PTRELA+Q ++ T L+S + GG +Q
Sbjct: 85 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 144
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++VATPGR + + + ++ L +Y
Sbjct: 145 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 177
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 8e-08
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
IP +LE RD++A A+TGSGKTA FL
Sbjct: 54 IPAILEHRDIMACAQTGSGKTAAFLI 79
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 8e-48
Identities = 47/150 (31%), Positives = 78/150 (52%), Gaps = 6/150 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F +++ + + PT IQ + IP L G +V ++TG+GKT +L+P++EK
Sbjct: 6 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 65
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARL 154
+K + V+A+I +PTRELA Q + ++ KF + + CL+GG +L
Sbjct: 66 IKPER--AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKL 123
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ P IV+ TPGR + E L + +
Sbjct: 124 NVQPHIVIGTPGRINDFIREQALDVHTAHI 153
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IP L G +V ++TG+GKT +
Sbjct: 34 IIPGALRGESMVGQSQTGTGKTHAY 58
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 159 bits (405), Expect = 9e-48
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 12/182 (6%)
Query: 4 KDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPI 63
E I SN + ++ F L +L+G+ G++ P+ I
Sbjct: 6 HHSSGRENLYFQGGVIESNWN---------EIVDNFDDMNLKESLLRGIYAYGFEKPSAI 56
Query: 64 QRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123
Q++ I ++G DV+A A++G+GKTA F I +L++L+ +AL+L+PTRELA Q
Sbjct: 57 QQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKE--TQALVLAPTRELAQQI 114
Query: 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSI 182
K + LG + +GG ++ N+ +L A P IVV TPGR ++ L I
Sbjct: 115 QKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174
Query: 183 QY 184
+
Sbjct: 175 KM 176
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
I ++G DV+A A++G+GKTA F
Sbjct: 60 AIIPCIKGYDVIAQAQSGTGKTATF 84
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 4e-06
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 187 KFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQ 245
K + LG + +GG ++ N+ +L A P IVV TPGR ++ L I+
Sbjct: 116 KVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIK 175
Query: 246 L 246
+
Sbjct: 176 M 176
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 3e-47
Identities = 49/163 (30%), Positives = 84/163 (51%), Gaps = 3/163 (1%)
Query: 23 DDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMAR 82
+ G ++ F L +L+G+ G++ P+ IQ++ I ++G DV+A A+
Sbjct: 26 EPEGVIESNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQ 85
Query: 83 TGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
+G+GKTA F I +L++++ +AL+L+PTRELA Q K V LG + +
Sbjct: 86 SGTGKTATFAISILQQIELD--LKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACI 143
Query: 143 GGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQY 184
GG ++ + +L P I+V TPGR ++ L I+
Sbjct: 144 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKM 186
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
I ++G DV+A A++G+GKTA F
Sbjct: 70 AILPCIKGYDVIAQAQSGTGKTATF 94
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 2e-06
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 182 IQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELK 240
Q K V LG + +GG ++ + +L P I+V TPGR ++ L
Sbjct: 122 QQ-IQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLS 180
Query: 241 LSSIQL 246
I++
Sbjct: 181 PKYIKM 186
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 5e-47
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 3/161 (1%)
Query: 24 DNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMART 83
+ K+ F L +L+GV G++ P+ IQ++ I ++EG DV+A A++
Sbjct: 1 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQS 60
Query: 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG 143
G+GKT F I L+++ T +AL+L+PTRELALQ K V L ++ +G
Sbjct: 61 GTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 118
Query: 144 GDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
G S L IVV TPGR + + I+
Sbjct: 119 GTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKM 158
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
I ++EG DV+A A++G+GKT F
Sbjct: 44 AIMPIIEGHDVLAQAQSGTGKTGTF 68
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 182 IQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 241
+Q K V L ++ +GG S L IVV TPGR + +
Sbjct: 96 LQ-IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRT 153
Query: 242 SSIQL 246
I++
Sbjct: 154 DKIKM 158
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 7e-47
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 3/164 (1%)
Query: 21 SNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAM 80
++ + K+ F L +L+GV G++ P+ IQ++ I ++EG DV+A
Sbjct: 5 TDIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQ 64
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTC 140
A++G+GKT F I L+++ T +AL+L+PTRELALQ K V L ++
Sbjct: 65 AQSGTGKTGTFSIAALQRIDTS--VKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHA 122
Query: 141 LLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+GG S L IVV TPGR + + I+
Sbjct: 123 CIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKM 165
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 1e-06
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
I ++EG DV+A A++G+GKT F
Sbjct: 51 AIMPIIEGHDVLAQAQSGTGKTGTF 75
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 4e-06
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 182 IQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 241
+Q K V L ++ +GG S L IVV TPGR + +
Sbjct: 103 LQ-IQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRT 160
Query: 242 SSIQL 246
I++
Sbjct: 161 DKIKM 165
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-46
Identities = 49/149 (32%), Positives = 81/149 (54%), Gaps = 5/149 (3%)
Query: 40 QSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKL 99
+F ++LK +++ G PTPIQ + P++L+G D++ +A+TG+GKT +L+P L
Sbjct: 23 DAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHL 82
Query: 100 KTHAATS----GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ + G L+L+PTRELAL + L+S C+ GG + + Q +
Sbjct: 83 DSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIEDIS 141
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
DI++ATPGR + + + L SI Y
Sbjct: 142 KGVDIIIATPGRLNDLQMNNSVNLRSITY 170
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 3e-07
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
P++L+G D++ +A+TG+GKT +L
Sbjct: 51 WPIILQGIDLIVVAQTGTGKTLSYLM 76
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 4e-46
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 4/165 (2%)
Query: 21 SNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAM 80
+ TGD F+S L VL+G+ G++ P+P+Q K IPL G D++
Sbjct: 8 LSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQ 67
Query: 81 ARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQST 139
A++G+GKT F L+ L + LIL+PTRE+A+Q + +G + L+
Sbjct: 68 AKSGTGKTCVFSTIALDSLVL--ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125
Query: 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+GG + RL I V +PGR ++ L SI+
Sbjct: 126 VFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRL 169
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 2e-06
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IPL G D++ A++G+GKT F
Sbjct: 54 AIPLGRCGLDLIVQAKSGTGKTCVF 78
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-05
Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 12/81 (14%)
Query: 189 VKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ-- 245
+ +G + L+ +GG + RL I V +PGR ++ L SI+
Sbjct: 112 ITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLF 170
Query: 246 --------LSLTDFKQDTSRI 258
L F++ + I
Sbjct: 171 ILDEADKLLEEGSFQEQINWI 191
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 6e-46
Identities = 55/180 (30%), Positives = 87/180 (48%), Gaps = 10/180 (5%)
Query: 2 KKKDPEDIEGFEDPTVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPT 61
+ +D E D T K+ + + L E+ K + + + T
Sbjct: 37 TRSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLT 96
Query: 62 PIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS--GVRALILSPTR 117
P+Q+KTI +L E DV+A A+TG+GKT FLIP+ + L S V+A+I++PTR
Sbjct: 97 PVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 156
Query: 118 ELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFL-HI 171
+LALQ VK++ K L+GG +++ P+IV+ATPGR + +
Sbjct: 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL 216
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 294 TIPLVL--EGRDVVAMARTGSGKTACFL 319
TI +L E DV+A A+TG+GKT FL
Sbjct: 102 TIKPILSSEDHDVIARAKTGTGKTFAFL 129
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 4e-45
Identities = 51/138 (36%), Positives = 85/138 (61%), Gaps = 9/138 (6%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
++ + + + G+K T +Q KTIPL+L+G++VV A+TGSGKTA + IP+LE
Sbjct: 4 KIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-------- 55
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 166
G+++L+++PTREL Q ++++G++ + + GG Q R+ + DIVVATPG
Sbjct: 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPG 114
Query: 167 RFLHIVVEMELKLSSIQY 184
R L + + + LSS +
Sbjct: 115 RLLDLWSKGVIDLSSFEI 132
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
TIPL+L+G++VV A+TGSGKTA +
Sbjct: 24 TIPLMLQGKNVVVRAKTGSGKTAAY 48
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 5e-07
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQF 213
L +V TP R L V ++++G++ + + GG Q
Sbjct: 53 LELGMKSLVVTPTRELTRQVASH------------IRDIGRYMDTKVAEVYGGMPYKAQI 100
Query: 214 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 245
R+ + DIVVATPGR L + + + LSS +
Sbjct: 101 NRVR-NADIVVATPGRLLDLWSKGVIDLSSFE 131
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-44
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 7/148 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLE 97
F L +L + +G++ PT IQ K IPL L ++VA ARTGSGKTA F IP++E
Sbjct: 8 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 67
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
+ +G+ A+IL+PTRELA+Q ++ L L+ + GG ++ Q L +
Sbjct: 68 LVNE---NNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL-KN 123
Query: 158 PDIVVATPGRFL-HIVVEMELKLSSIQY 184
+IVV TPGR L HI L L +++Y
Sbjct: 124 ANIVVGTPGRILDHINRGT-LNLKNVKY 150
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 294 TIPLVLEGR-DVVAMARTGSGKTACF 318
IPL L ++VA ARTGSGKTA F
Sbjct: 36 VIPLFLNDEYNIVAQARTGSGKTASF 61
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 9e-05
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 189 VKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMELKLSSIQ 245
++ L L+ + GG ++ Q L + +IVV TPGR L HI L L +++
Sbjct: 94 IESLKGNKNLKIAKIYGGKAIYPQIKAL-KNANIVVGTPGRILDHINRGT-LNLKNVK 149
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-44
Identities = 50/155 (32%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 27 NTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTG 84
K+ + + L E+ K + + + TP+Q+KTI +L E DV+A A+TG
Sbjct: 11 EDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTG 70
Query: 85 SGKTACFLIPMLEKL--KTHAATSGVRALILSPTRELALQTFKFVKELGKFT----KLQS 138
+GKT FLIP+ + L + V+A+I++PTR+LALQ VK++ K
Sbjct: 71 TGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 130
Query: 139 TCLLGGDSMDNQFARLHAS-PDIVVATPGRFL-HI 171
L+GG +++ P+IV+ATPGR + +
Sbjct: 131 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL 165
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 6e-06
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 294 TIPLVL--EGRDVVAMARTGSGKTACFL 319
TI +L E DV+A A+TG+GKT FL
Sbjct: 51 TIKPILSSEDHDVIARAKTGTGKTFAFL 78
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 149 bits (380), Expect = 7e-44
Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F V+ + ++ + PT IQ + P+ L G D+V +A+TGSGKT +L+P +
Sbjct: 31 FYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVH 90
Query: 99 LKTHAATS---GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+ G L+L+PTRELA Q + E + +L+STC+ GG Q L
Sbjct: 91 INHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+I +ATPGR + + + L Y
Sbjct: 151 RGVEICIATPGRLIDFLECGKTNLRRTTY 179
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 5e-07
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
P+ L G D+V +A+TGSGKT +L
Sbjct: 60 WPVALSGLDMVGVAQTGSGKTLSYLL 85
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 2e-06
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 217
P +V P R L V+ ++ + +L+STC+ GG Q L
Sbjct: 103 PICLVLAPTRELAQQVQQVAA--------EY----CRACRLKSTCIYGGAPKGPQIRDLE 150
Query: 218 ASPDIVVATPGRFLHIVVEMELKLSSI 244
+I +ATPGR + + + L
Sbjct: 151 RGVEICIATPGRLIDFLECGKTNLRRT 177
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 9e-44
Identities = 57/149 (38%), Positives = 84/149 (56%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F S L ++ V K GYKIPTPIQ+ +IP++ GRD++A A+TGSGKTA FL+P+L K
Sbjct: 58 FTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSK 117
Query: 99 LKTHA---ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
L + +I+SPTRELA+Q F ++ + L+ + GG S +Q +
Sbjct: 118 LLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT 177
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+V+ATPGR L V + ++
Sbjct: 178 RGCHVVIATPGRLLDFVDRTFITFEDTRF 206
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
IP++ GRD++A A+TGSGKTA FL
Sbjct: 87 IPVISSGRDLMACAQTGSGKTAAFLL 112
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 9e-43
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 16/162 (9%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F +G ++ + Y PTP+Q+ IP++ E RD++A A+TGSGKTA FL+P+L +
Sbjct: 17 FSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQ 76
Query: 99 LKTHAATSGVR----------------ALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142
+ + +R +L+L+PTRELA+Q ++ ++ ++++ +
Sbjct: 77 IYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVY 136
Query: 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
GG + Q L ++VATPGR + ++ ++ L +Y
Sbjct: 137 GGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKY 178
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 295 IPLVLEGRDVVAMARTGSGKTACFLF 320
IP++ E RD++A A+TGSGKTA FL
Sbjct: 46 IPIIKEKRDLMACAQTGSGKTAAFLL 71
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 2e-42
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L+
Sbjct: 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARL-H 155
+L+ V L++ TRELA Q K + K+ ++ GG S+ L
Sbjct: 75 QLEPVTGQ--VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 133 NCPHIVVGTPGRILALARNKSLNLKHIKH 161
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IP + G DV+ A++G GKTA F
Sbjct: 44 CIPQAILGMDVLCQAKSGMGKTAVF 68
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 189 VKELGKFTK-LQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELKLSSIQ- 245
+ K+ ++ GG S+ L P IVV TPGR L + L L I+
Sbjct: 102 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 161
Query: 246 ---------LSLTDFKQDTSRI 258
L D ++D I
Sbjct: 162 FILDECDKMLEQLDMRRDVQEI 183
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 146 bits (372), Expect = 3e-41
Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 4/149 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L+
Sbjct: 9 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 68
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARL-H 155
+L+ V L++ TRELA Q K + K+ ++ GG S+ L
Sbjct: 69 QLEPVT--GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 126
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
P IVV TPGR L + L L I++
Sbjct: 127 NCPHIVVGTPGRILALARNKSLNLKHIKH 155
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACF 318
IP + G DV+ A++G GKTA F
Sbjct: 38 CIPQAILGMDVLCQAKSGMGKTAVF 62
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 1e-04
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 189 VKELGKFTK-LQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELKLSSIQ- 245
+ K+ ++ GG S+ L P IVV TPGR L + L L I+
Sbjct: 96 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 155
Query: 246 ---------LSLTDFKQDTSRI 258
L D ++D I
Sbjct: 156 FILDECDKMLEQLDMRRDVQEI 177
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 6e-41
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 9/150 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF L+ + G+ ++
Sbjct: 154 SQVEP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 208
Query: 156 ASPDIVVATPGRFL-HIVVEMELKLSSIQY 184
S IV+ TPG L + I+
Sbjct: 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 294 TIPLVLEG--RDVVAMARTGSGKTACF 318
+PL+L ++++A +++G+GKTA F
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 182 IQYTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL 239
+Q T K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 176 LQ-TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 231
Query: 240 KLSSIQ----------LSLTDFKQDTSRI 258
I+ ++ + + RI
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRI 260
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 145 bits (369), Expect = 1e-40
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 9/150 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 27 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 86
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF L+ + G+ ++
Sbjct: 87 SQVEP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 141
Query: 156 ASPDIVVATPGRFL-HIVVEMELKLSSIQY 184
S IV+ TPG L + I+
Sbjct: 142 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 171
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 294 TIPLVLEG--RDVVAMARTGSGKTACF 318
+PL+L ++++A +++G+GKTA F
Sbjct: 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 4e-04
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 182 IQYTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL 239
+Q T K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 109 LQ-TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 164
Query: 240 KLSSIQ----------LSLTDFKQDTSRI 258
I+ ++ + + RI
Sbjct: 165 DPKKIKVFVLDEADVMIATQGHQDQSIRI 193
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 9e-40
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 9/150 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F+ L ++L+GV G+ P+ IQ +PL+L ++++A +++G+GKTA F++ ML
Sbjct: 94 FEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAML 153
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLH 155
+++ A + L LSPT ELALQT K ++++GKF L+ + G+ ++
Sbjct: 154 SQVEP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QK 208
Query: 156 ASPDIVVATPGRFL-HIVVEMELKLSSIQY 184
S IV+ TPG L + I+
Sbjct: 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 10/27 (37%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 294 TIPLVLEG--RDVVAMARTGSGKTACF 318
+PL+L ++++A +++G+GKTA F
Sbjct: 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 182 IQYTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVEMEL 239
+Q T K ++++GKF L+ + G+ ++ S IV+ TPG L +
Sbjct: 176 LQ-TGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFI 231
Query: 240 KLSSIQ----------LSLTDFKQDTSRI 258
I+ ++ + + RI
Sbjct: 232 DPKKIKVFVLDEADVMIATQGHQDQSIRI 260
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 2e-39
Identities = 48/149 (32%), Positives = 85/149 (57%), Gaps = 10/149 (6%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPML 96
F GL E+LKG+ ++ P+ IQ + +PL+L R+++A +++G+GKTA F + ML
Sbjct: 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTML 66
Query: 97 EKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST-CLLGGDSMDNQFARLH 155
++ + +A+ L+P+RELA QT + V+E+GKFTK+ S + + Q
Sbjct: 67 TRVNPED--ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI---- 120
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++V TPG L ++ ++L I+
Sbjct: 121 -NAQVIVGTPGTVLDLMRRKLMQLQKIKI 148
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 7e-05
Identities = 11/27 (40%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Query: 294 TIPLVLEG--RDVVAMARTGSGKTACF 318
+PL+L R+++A +++G+GKTA F
Sbjct: 35 ALPLLLHNPPRNMIAQSQSGTGKTAAF 61
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 7e-37
Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 14/145 (9%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ K+ K T QR +++G+ +A TG GKT ++ L +
Sbjct: 9 DFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----K 63
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVV 162
G ++ ++ PT L QT + +++L K++ + + I+V
Sbjct: 64 GKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILV 122
Query: 163 ATPGRFLHIVVEME-LKLSSIQYTF 186
+ E L + F
Sbjct: 123 FSTQFVSK---NREKLSQKRFDFVF 144
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 4e-07
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329
+++G+ +A TG GKT + + +G
Sbjct: 29 WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG 64
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 64.2 bits (155), Expect = 1e-11
Identities = 37/242 (15%), Positives = 80/242 (33%), Gaps = 9/242 (3%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
P Q + ++G++ + A TG GKT L+ LK + + + +
Sbjct: 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPV 73
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
Q + + + T + G + + ++ + DI++ TP ++ + + +
Sbjct: 74 YEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPS 133
Query: 180 SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEME 238
S +T E +K ++ + +D + P ++ T + +
Sbjct: 134 LS-IFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTD 192
Query: 239 LKLSSIQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQSVRKWDPAKKKYVQVTDDTIPLV 298
L I D S IA + + Q V K +K D +
Sbjct: 193 EALDYICKLCASL--DASVIAT-----VKHNLEELEQVVYKPQKFFRKVESRISDKFKYI 245
Query: 299 LE 300
+
Sbjct: 246 IA 247
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 61.5 bits (148), Expect = 1e-10
Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 8/246 (3%)
Query: 1 MKKKDPEDIEGFEDP-TVTISSNDDNGNTGDKKKKMGGGFQSFGLGFEVLKGVLKRGYKI 59
K D E + ED +++ +++ + + +G + G V + R Y
Sbjct: 195 AKDVDSEMTDASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSY-- 252
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
Q + + G++ + A TGSGKT ++ + A + + L+ +
Sbjct: 253 ----QIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 309 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTS 368
Query: 180 SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 239
S +T E T +L ++ +F P I+ T + +E
Sbjct: 369 LS-IFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 240 KLSSIQ 245
+ I
Sbjct: 428 TIEHIC 433
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 3e-10
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
VL+R P Q E ++ + TG GKT ++ +L + + L
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKETNCLIVLP-TGLGKTLIAMMIAEYRLTKYGG----KVL 56
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 171
+L+PT+ L LQ + + L + L G+ + ++ A ++VATP +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEK-IVALTGEKSPEERSKAWARAKVIVATPQTIEND 115
Query: 172 VVEMELKLSSI 182
++ + L +
Sbjct: 116 LLAGRISLEDV 126
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.8 bits (141), Expect = 9e-10
Identities = 20/118 (16%), Positives = 38/118 (32%), Gaps = 6/118 (5%)
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114
R Y Q + +G++ + A TG GKT L+ LK + + +
Sbjct: 6 RNY------QLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFA 59
Query: 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172
+ Q + + G S + DI++ TP ++ +
Sbjct: 60 NQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNL 117
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-09
Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 1/186 (0%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
Q + + G++ + A TGSGKT ++ + A + + L+ +
Sbjct: 8 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 67
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 68 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTS 127
Query: 180 SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 239
S +T E T +L ++ +F P I+ T + +E
Sbjct: 128 LS-IFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 186
Query: 240 KLSSIQ 245
+ I
Sbjct: 187 TIEHIC 192
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 57.7 bits (138), Expect = 3e-09
Identities = 34/220 (15%), Positives = 71/220 (32%), Gaps = 1/220 (0%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
Q + + G++ + A TGSGKT ++ + A + + L+ +
Sbjct: 249 ARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPV 308
Query: 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
Q K + + G + + ++ DI+V TP ++ + L
Sbjct: 309 YEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTS 368
Query: 180 SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL 239
S +T E T +L ++ +F P I+ T + +E
Sbjct: 369 LS-IFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEE 427
Query: 240 KLSSIQLSLTDFKQDTSRIALDLVGDSTEMIHKQRQSVRK 279
+ I + + + + ++K VR
Sbjct: 428 TIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRL 467
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} Length = 216 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-08
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 11/114 (9%)
Query: 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT--ACFLI-PMLEKLKTHAATSGVRAL 111
R Y Q + LEG++++ TGSGKT A ++ L+K K A+ + +
Sbjct: 35 RPY------QMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKK--KASEPGKVI 86
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 165
+L L Q F+ + + L G + F + S DI+++T
Sbjct: 87 VLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTA 140
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 41 SFGLGFEVLKGVLKRGYKIPTPIQRKTIP-LVLEGRDVVAMARTGSGKTACFLIPMLEKL 99
L V++ + KRG K P Q + + +LEG ++ + TGSGKT + ++ L
Sbjct: 12 DLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFL 71
Query: 100 KTHAATSGVRALILSPTRELA---LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+ G +A+ ++P R L TFK + +G + GD + +
Sbjct: 72 LKN----GGKAIYVTPLRALTNEKYLTFKDWELIGF-----KVAMTSGDYDTDDAWLKNY 122
Query: 157 SPDIVVATP 165
DI++ T
Sbjct: 123 --DIIITTY 129
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ + + G + P Q + + V G++++ T +GKT + M+ A
Sbjct: 13 YAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV-----REAIK 67
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 165
G ++L + P R LA + ++ K+ K + GD DI+V T
Sbjct: 68 GGKSLYVVPLRALAGEKYESFKKWEKIGL--RIGISTGDYESRDEHLGDC--DIIVTTS 122
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 6e-07
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 54 KRGYKIPTPIQRKTIP-LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112
+RG + P Q + + +LEG++ + T SGKT I M+ ++ T G +A+
Sbjct: 18 ERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVY 73
Query: 113 LSPTRELA---LQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATP 165
+ P + LA Q F+ +++G + GD DI++AT
Sbjct: 74 IVPLKALAEEKFQEFQDWEKIGL-----RVAMATGDYDSKDEWLGKY--DIIIATA 122
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 9e-05
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 25/93 (26%)
Query: 74 GRDVVAMARTGSGKT--ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131
R + + TGSGKT A I LI+ PT LA Q + + LG
Sbjct: 109 KRGCIVLP-TGSGKTHVAMAAI----------NELSTPTLIVVPTLALAEQ---WKERLG 154
Query: 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVAT 164
F + G + + + V+T
Sbjct: 155 IFGEEY-VGEFSGRIKELK--------PLTVST 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 1e-04
Identities = 52/303 (17%), Positives = 98/303 (32%), Gaps = 94/303 (31%)
Query: 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKT-----AC---------- 90
+ L+ L R ++++G + GSGKT C
Sbjct: 137 YLKLRQALLE--------LRPAKNVLIDG-----VL--GSGKTWVALDVCLSYKVQCKMD 181
Query: 91 ---F------------LIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135
F ++ ML+KL + S +L + + + EL + K
Sbjct: 182 FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLK 239
Query: 136 LQS--TCLLGGDSMDN-QFARLHASPD----IVVATPGRFLHIVVEMELKLSSIQYTFKF 188
+ CLL + N Q A+ + + I++ T RF + LS+ T
Sbjct: 240 SKPYENCLL---VLLNVQNAKAWNAFNLSCKILLTT--RFKQVT----DFLSAATTTHIS 290
Query: 189 VKELGK-FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQLS 247
+ T + LL +D + L +++ P +LS I S
Sbjct: 291 LDHHSMTLTPDEVKSLL-LKYLDCRPQDL--PREVLTTNP-----------RRLSIIAES 336
Query: 248 LTDFK---QDTSRIALDLVGDSTEMIHKQRQSVRKWDPA--KKKYVQVT---DDT-IPL- 297
+ D + + D ++ S+ +PA +K + +++ IP
Sbjct: 337 IRDGLATWDNWKHVNCD------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 298 VLE 300
+L
Sbjct: 391 LLS 393
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 32/204 (15%), Positives = 62/204 (30%), Gaps = 72/204 (35%)
Query: 175 MELKLSSIQYTFK---------FVKEL----------GKFTKLQSTCLLGGDSMDNQFAR 215
M+ + QY +K FV +K + ++ + R
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 216 LHASPDIVVATPGRFLHIVVEMELK------LSSIQ-------LSLTDFKQDTSRIALDL 262
L +++ + VE L+ +S I+ + + + R L
Sbjct: 67 LF---WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR----L 119
Query: 263 VGDST----------EMIHKQRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMARTGS 312
D+ + K RQ++ + PAK ++++G + GS
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN-----------VLIDG-----VL--GS 161
Query: 313 GKT-----ACFLFYFFFRFDRGNF 331
GKT C + + D F
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIF 185
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* Length = 1054 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119
P IQ+ +L A A TG GKT+ F + M A G R ++ PT L
Sbjct: 57 PRAIQKMWAKRILRKESFAATAPTGVGKTS-FGLAM----SLFLALKGKRCYVIFPTSLL 111
Query: 120 ALQTFKFVKELGKFTKLQSTCLL 142
+Q + +++ + + + L+
Sbjct: 112 VIQAAETIRKYAEKAGVGTENLI 134
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 39.2 bits (90), Expect = 4e-04
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 12/36 (33%)
Query: 273 QRQSVRKWDPAKKKYVQVTDDTIPLVLEGRDVVAMA 308
++Q+++K + K Y DD+ P A+A
Sbjct: 18 EKQALKKLQASLKLY---ADDSAP---------ALA 41
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 100.0 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 100.0 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 100.0 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 100.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.98 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.98 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.98 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.98 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.98 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.97 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.97 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.97 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.97 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.97 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.97 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.97 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.97 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.97 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.97 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.97 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.96 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.96 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.96 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.96 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.96 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.94 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.94 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.94 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.94 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.93 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.92 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.92 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.92 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.92 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.91 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.91 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.88 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.84 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.82 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.81 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.78 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.76 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.74 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.74 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.72 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.71 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.63 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.57 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.5 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.4 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.38 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.34 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.33 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.28 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 99.21 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 98.97 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 98.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 98.91 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 98.89 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 98.85 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 98.34 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 98.83 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 98.79 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 98.7 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 98.38 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 97.6 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 97.41 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 97.21 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 97.16 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.98 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 96.92 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.79 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 96.76 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 96.45 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 96.1 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 96.08 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 95.79 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 95.39 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 95.29 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 94.98 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 93.84 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 93.81 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 93.78 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 93.72 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 93.71 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 93.59 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 93.53 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 93.52 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 93.45 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 93.4 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 93.26 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 93.22 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 93.08 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 93.03 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 92.92 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 92.8 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 92.61 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 92.27 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 91.97 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.77 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 91.73 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 91.64 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 91.62 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 91.58 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 91.44 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 91.2 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 90.85 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 90.54 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 90.54 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 90.52 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 90.26 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 90.07 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 89.94 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 89.89 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 89.84 | |
| 3hjh_A | 483 | Transcription-repair-coupling factor; MFD, mutatio | 89.53 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 89.46 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 89.41 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 89.38 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 89.33 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 89.33 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 89.3 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 89.14 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 89.04 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 88.7 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 88.61 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 88.46 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 88.4 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 88.38 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 87.8 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 87.64 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 87.62 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 87.43 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 87.39 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 87.31 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 87.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 86.27 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 86.21 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 86.16 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 85.78 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 85.7 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 85.47 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 85.45 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 85.38 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 85.34 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 85.22 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 85.17 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 85.1 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 85.04 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 85.03 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 84.92 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 84.74 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 84.74 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 84.68 | |
| 3nwn_A | 359 | Kinesin-like protein KIF9; motor domain, ADP, stru | 84.51 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 84.18 | |
| 1bg2_A | 325 | Kinesin; motor protein, ATPase, microtubule associ | 84.14 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 84.13 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 84.05 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 83.98 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 83.81 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 83.75 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 83.55 | |
| 3dc4_A | 344 | Kinesin-like protein NOD; catalytic domain, ATPase | 83.42 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 83.39 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 83.36 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 83.19 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 83.13 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 83.06 | |
| 4a14_A | 344 | Kinesin, kinesin-like protein KIF7; motor protein, | 82.9 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 82.83 | |
| 2vvg_A | 350 | Kinesin-2; motor protein, nucleotide-binding, micr | 82.8 | |
| 2h58_A | 330 | Kinesin-like protein KIFC3 variant; motor domain, | 82.75 | |
| 2y65_A | 365 | Kinesin, kinesin heavy chain; motor protein; HET: | 82.74 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 82.71 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 82.67 | |
| 1goj_A | 355 | Kinesin, kinesin heavy chain; motor protein, ATPas | 82.51 | |
| 2zfi_A | 366 | Kinesin-like protein KIF1A, kinesin heavy chain is | 82.47 | |
| 4etp_A | 403 | Kinesin-like protein KAR3; kinesin motor protein, | 82.38 | |
| 3b6u_A | 372 | Kinesin-like protein KIF3B; structural genomics co | 82.36 | |
| 3lre_A | 355 | Kinesin-like protein KIF18A; motor protein, nucleo | 82.28 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 82.28 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 82.16 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 82.04 | |
| 3t0q_A | 349 | AGR253WP; kinesin, alpha and beta proteins, P-loop | 81.99 | |
| 3gbj_A | 354 | KIF13B protein; kinesin, motor domain, ADP, struct | 81.99 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 81.9 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 81.85 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 81.83 | |
| 1t5c_A | 349 | CENP-E protein, centromeric protein E; kinesin mot | 81.82 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 81.8 | |
| 2nr8_A | 358 | Kinesin-like protein KIF9; motor domain, ADP, stru | 81.77 | |
| 1v8k_A | 410 | Kinesin-like protein KIF2C; microtubule destabiliz | 81.61 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 81.52 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 81.39 | |
| 1x88_A | 359 | Kinesin-like protein KIF11; switch II, motor domai | 81.37 | |
| 3u06_A | 412 | Protein claret segregational; motor domain, stalk | 81.27 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 81.26 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 81.26 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 81.23 | |
| 1f9v_A | 347 | Kinesin-like protein KAR3; kinesin-related protein | 81.21 | |
| 2heh_A | 387 | KIF2C protein; kinesin, motor domain, ADP, structu | 81.21 | |
| 2wbe_C | 373 | Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit | 81.1 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 81.08 | |
| 3cob_A | 369 | Kinesin heavy chain-like protein; motor, switch II | 81.05 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 81.02 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 80.98 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 80.9 | |
| 3bfn_A | 388 | Kinesin-like protein KIF22; limited proteolysis, s | 80.83 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 80.62 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 80.35 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 80.15 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 80.06 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-46 Score=352.05 Aligned_cols=291 Identities=28% Similarity=0.418 Sum_probs=238.7
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc---cCC
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA---TSG 107 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~---~~~ 107 (333)
+-+.+..+|++++|++.++++|+++||.+|||+|.++||.+++|+|++++||||||||++|++|+++.+..... ..+
T Consensus 50 ~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 50 DVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp SCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred CCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 108 VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 108 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+++||++||++|+.|+++.+++++...++++..++||.+...+...+.++++|+|+||++|++++.++.+.+++++++|+
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVl 209 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVL 209 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEE
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEE
Confidence 79999999999999999999999988899999999999998888888889999999999999999998889999999996
Q ss_pred ----------HHHHHhhcc-----ccceeeeecCCChHHHHHhhh----cCCcEE-Ee----CCCceEEEEEec--chhh
Q psy18032 188 ----------FVKELGKFT-----KLQSTCLLGGDSMDNQFARLH----ASPDIV-VA----TPGRFLHIVVEM--ELKL 241 (333)
Q Consensus 188 ----------~i~~l~~~~-----~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~----t~~~i~~~~~~~--~~k~ 241 (333)
|.+++.+++ +...|++++|||+++.+..+. .++..+ ++ +...+.+.+... ..|.
T Consensus 210 DEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 210 DEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp ETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHH
T ss_pred ccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHH
Confidence 233333332 356899999999998877664 333322 22 234566666543 2222
Q ss_pred hhH----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCc
Q psy18032 242 SSI----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTI 295 (333)
Q Consensus 242 ~~l----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i 295 (333)
..+ .+|||++++.|+.+++.|. |+++..+|| +.+.+++|++|+.+|||||| +++
T Consensus 290 ~~l~~~l~~~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v 369 (434)
T 2db3_A 290 SKLIEILSEQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNI 369 (434)
T ss_dssp HHHHHHHHHCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTC
T ss_pred HHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccC
Confidence 222 5899999999999999996 899999998 23566999999999999999 456
Q ss_pred ccccc-------cccEEEEccCC----CchhhHHHhh
Q psy18032 296 PLVLE-------GRDVVAMARTG----SGKTACFLFY 321 (333)
Q Consensus 296 ~~vi~-------~~~~~~~grtG----~g~~~~~~lp 321 (333)
..||+ ..|+||+|||| .|++..|+.|
T Consensus 370 ~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~ 406 (434)
T 2db3_A 370 KHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDP 406 (434)
T ss_dssp CEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECT
T ss_pred CEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEec
Confidence 66664 45999999999 4666665543
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=321.80 Aligned_cols=281 Identities=23% Similarity=0.379 Sum_probs=227.1
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA------ 104 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------ 104 (333)
+.+.+..+|++++|++.++++|.++||..|+|+|.++||.++.|+|++++||||||||++|++|+++.+.....
T Consensus 9 ~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 9 NCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp TCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred cCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 34567788999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred ----------cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh
Q psy18032 105 ----------TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE 174 (333)
Q Consensus 105 ----------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~ 174 (333)
..++++||++||++|+.|+++.++.++...++++..++|+....++...+.++++|+|+||++|.+++..
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER 168 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc
Confidence 1246899999999999999999999988889999999999998888888888999999999999999998
Q ss_pred ccccccCchhhHH----------HHHHHhhccc-------cceeeeecCCChHHHHHhhh----cCCcEEEe-----CCC
Q psy18032 175 MELKLSSIQYTFK----------FVKELGKFTK-------LQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPG 228 (333)
Q Consensus 175 ~~~~~~~l~~lV~----------~i~~l~~~~~-------~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~ 228 (333)
+.+.+++++++|+ +...+..+.. ...+++++|||+++.+..+. ..+..+.. .+.
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSE 248 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCcc
Confidence 8888899998885 1222222221 25789999999987665442 34433321 334
Q ss_pred ceEEEEEec--chhhhh------------HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcc
Q psy18032 229 RFLHIVVEM--ELKLSS------------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKK 286 (333)
Q Consensus 229 ~i~~~~~~~--~~k~~~------------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~ 286 (333)
.+.+.+... ..+... ..+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ 328 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP 328 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSC
T ss_pred CceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCC
Confidence 566655433 222221 15899999999999999996 899999998 33566999999999
Q ss_pred cccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 287 YVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 287 vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
|||||| +++..|++ ..|+||+||+|
T Consensus 329 vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~g 368 (417)
T 2i4i_A 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 368 (417)
T ss_dssp EEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBC
T ss_pred EEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccc
Confidence 999998 44555554 45899999999
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=316.71 Aligned_cols=280 Identities=23% Similarity=0.440 Sum_probs=228.9
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
..+.+...+|++++|++.++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|+++.+... ..+++
T Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~ 107 (410)
T 2j0s_A 30 SEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQ 107 (410)
T ss_dssp CTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCC
T ss_pred CCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCce
Confidence 3344567899999999999999999999999999999999999999999999999999999999999987642 24679
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+||++||++|+.|+++.++.++...++.+..+.|+....++...+..+++|+|+||+++.+++..+.+.+..++++|+
T Consensus 108 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDE 187 (410)
T 2j0s_A 108 ALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 187 (410)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEcc
Confidence 999999999999999999999988999999999999998888888888999999999999999998888889999885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI 244 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l 244 (333)
.+..+...++...|++++|||+++.+..+. ..+..+.. +...+.+.+.... .+...+
T Consensus 188 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l 267 (410)
T 2j0s_A 188 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTL 267 (410)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHH
Confidence 122233334567899999999998776553 23322221 3345666655432 122222
Q ss_pred -----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccc
Q psy18032 245 -----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 245 -----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
.+|||++++.++.+++.|. |+.+..+|| +| +.+++|++|+.+|||||| +++..
T Consensus 268 ~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 268 CDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp HHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred HHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 5899999999999999996 889999998 23 456999999999999998 44555
Q ss_pred ccc-------cccEEEEccCC
Q psy18032 298 VLE-------GRDVVAMARTG 311 (333)
Q Consensus 298 vi~-------~~~~~~~grtG 311 (333)
|++ ..|+||+||+|
T Consensus 348 Vi~~~~p~s~~~~~Qr~GR~g 368 (410)
T 2j0s_A 348 IINYDLPNNRELYIHRIGRSG 368 (410)
T ss_dssp EEESSCCSSHHHHHHHHTTSS
T ss_pred EEEECCCCCHHHHHHhccccc
Confidence 554 44899999999
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=301.22 Aligned_cols=277 Identities=23% Similarity=0.415 Sum_probs=218.7
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.....+|+++++++.+++.|+++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..+.++||
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 113 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALV 113 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred cchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEE
Confidence 4556799999999999999999999999999999999999999999999999999999999999988652 24678999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
++|+++|+.|+++.++.++...+..+..++|+.....+...+. .+++|+|+||+++.+++..+.+.+..++++|+
T Consensus 114 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah 193 (414)
T 3eiq_A 114 LAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 193 (414)
T ss_dssp ECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHH
T ss_pred EeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHH
Confidence 9999999999999999999989999999999998887777666 57999999999999999998888888888885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH--
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI-- 244 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l-- 244 (333)
.+..+...++...+++++|||++..+..+. ..+..+.. ++..+.+.+.... .+...+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 273 (414)
T 3eiq_A 194 EMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCD 273 (414)
T ss_dssp HHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHH
T ss_pred HhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHH
Confidence 122222334567899999999987766543 23322221 2234555554332 122222
Q ss_pred ---------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 245 ---------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 245 ---------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
.+|||++++.++.+++.|. ++.+..+|| +.+.++.|++|+.+|||||+ +++..||
T Consensus 274 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 274 LYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 5899999999999999996 889999998 23456999999999999998 4455566
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
+ ..|+||+||+|
T Consensus 354 ~~~~p~s~~~~~Qr~GR~g 372 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGG 372 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-
T ss_pred EeCCCCCHHHhhhhcCccc
Confidence 4 45899999999
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-39 Score=301.43 Aligned_cols=276 Identities=28% Similarity=0.465 Sum_probs=221.4
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
....+|++++|+++++++|.++||..|+|+|.++++.+++|+|+++++|||||||++|++|++..+... ..++++||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 95 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIM 95 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999987652 236689999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+|+++|+.|+++.++.++...++.+....|+.....+...+..+++|+|+||+++.+++......+.+++++|+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~ 175 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 175 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHh
Confidence 99999999999999999988899999999999888877777788999999999999999888788888888885
Q ss_pred ----H---HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE----eCCCceEEEEEec--chhhhhH------
Q psy18032 188 ----F---VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV----ATPGRFLHIVVEM--ELKLSSI------ 244 (333)
Q Consensus 188 ----~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~----~t~~~i~~~~~~~--~~k~~~l------ 244 (333)
+ +..+...++...+.+++|||++..+..+. ..+..+. .+...+.+++... ..+...+
T Consensus 176 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~ 255 (400)
T 1s2m_A 176 LSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSK 255 (400)
T ss_dssp SSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHH
T ss_pred hhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhh
Confidence 2 22233334567899999999987665432 2232211 1233455555432 2222221
Q ss_pred -----HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc---
Q psy18032 245 -----QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE--- 300 (333)
Q Consensus 245 -----~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~--- 300 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+|||||+ +++..|++
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 5899999999999999997 899999998 33556999999999999998 34455554
Q ss_pred ----cccEEEEccCC
Q psy18032 301 ----GRDVVAMARTG 311 (333)
Q Consensus 301 ----~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 336 p~s~~~~~Qr~GR~g 350 (400)
T 1s2m_A 336 PKTAETYLHRIGRSG 350 (400)
T ss_dssp CSSHHHHHHHHCBSS
T ss_pred CCCHHHHHHhcchhc
Confidence 35899999998
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=310.82 Aligned_cols=281 Identities=23% Similarity=0.391 Sum_probs=150.0
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
...+|++++|+++++++|.++||..|+|+|.++++.+++| +|++++||||||||++|++|+++.+... ..++++||
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~li 167 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 167 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEE
T ss_pred CcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEE
Confidence 3569999999999999999999999999999999999997 9999999999999999999999988763 34669999
Q ss_pred EcccHHHHHHHHHHHHHHhcc-CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH---
Q psy18032 113 LSPTRELALQTFKFVKELGKF-TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK--- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~--- 187 (333)
++||++|+.|+++.++.++.. .++.+....++...... ...+++|+|+||+++++++.+ +.+.+++++++|+
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 999999999999999998875 36778778777654432 133679999999999999865 4567889999885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhh---
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKL--- 241 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~--- 241 (333)
....+.+..+...|++++|||++..+..+. ..+.++.. +...+.+.+.... .+.
T Consensus 245 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 324 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 324 (479)
T ss_dssp HHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------------
T ss_pred HHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHH
Confidence 111233344567899999999998765543 33333322 1223333332211 111
Q ss_pred --------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccc
Q psy18032 242 --------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPL 297 (333)
Q Consensus 242 --------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~ 297 (333)
..-.+|||++++.|+.++..|. ++.+..+|| +++.++.|++|+.+|||||+ +++..
T Consensus 325 ~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~ 404 (479)
T 3fmp_B 325 CNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSV 404 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCE
Confidence 1236899999999999999997 788999998 23456999999999999998 45666
Q ss_pred ccc-------------cccEEEEccCC----CchhhHHHh
Q psy18032 298 VLE-------------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 298 vi~-------------~~~~~~~grtG----~g~~~~~~l 320 (333)
||+ ..|+||+||+| .|++..|+-
T Consensus 405 VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 405 VINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ----------------------------------------
T ss_pred EEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 664 25999999999 344555443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=296.62 Aligned_cols=277 Identities=24% Similarity=0.381 Sum_probs=158.5
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
..+...+|+++++++.++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++|
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~l 93 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQAL 93 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999987652 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+++|+.|+++.++.+....++++..+.|+....+....+. +++|+|+||+++.+.+....+.+.+++++|+
T Consensus 94 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 94 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 99999999999999999998888999999999988777655554 6899999999999999888888888888885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhh----hcCCcEEEeC-----CCceEEEEEecc---hhh-----
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVAT-----PGRFLHIVVEME---LKL----- 241 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t-----~~~i~~~~~~~~---~k~----- 241 (333)
.+..+...++...+.+++|||+++.+..+ ...+..+... +..+.+.+.... .+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 252 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTD 252 (394)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------
T ss_pred HhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHH
Confidence 12222333456789999999998765443 2333322221 122222222110 011
Q ss_pred ------hhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 242 ------SSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 242 ------~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
..-.+|||++++.++.+++.|. ++.+..+|| +++.++.|++|+.+|||||+ +++..|+
T Consensus 253 ~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 253 LYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 1236899999999999999997 788999998 23456999999999999998 4455555
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
. ..|+||+||+|
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~ 351 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGG 351 (394)
T ss_dssp -------------------
T ss_pred EeCCCCCHHHHHHHcCccc
Confidence 4 46999999999
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=296.73 Aligned_cols=274 Identities=23% Similarity=0.397 Sum_probs=215.3
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
.....+|+++++++.++++|.++||..|+|+|.++++.++++ +|++++||||||||++|++|+++.+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~ 98 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQC 98 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCE
T ss_pred ccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCE
Confidence 355679999999999999999999999999999999999998 9999999999999999999999988763 346689
Q ss_pred EEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH-
Q psy18032 111 LILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~- 187 (333)
||++||++|+.|+++.+++++... ++.+....++...... ...+++|+|+||+++.+++.+ +.+.+++++++|+
T Consensus 99 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViD 175 (412)
T 3fht_A 99 LCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 175 (412)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEe
Confidence 999999999999999999987763 6788888887765432 134689999999999998865 5667888888885
Q ss_pred H-------------HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhh
Q psy18032 188 F-------------VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLS 242 (333)
Q Consensus 188 ~-------------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~ 242 (333)
. ...+...++...|++++|||+++.+..+. ..+..+.. +...+.+.+.... .+..
T Consensus 176 Eah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (412)
T 3fht_A 176 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQ 255 (412)
T ss_dssp THHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHH
T ss_pred CHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHH
Confidence 1 11223334567899999999987765543 33433322 2345566555432 2222
Q ss_pred hH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCc
Q psy18032 243 SI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTI 295 (333)
Q Consensus 243 ~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i 295 (333)
.+ .+|||++++.++.+++.|. ++.+..+|| +.+.++.|++|+.+|||||+ +++
T Consensus 256 ~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 256 ALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 21 5899999999999999996 889999998 23456999999999999998 455
Q ss_pred ccccc-------------cccEEEEccCC
Q psy18032 296 PLVLE-------------GRDVVAMARTG 311 (333)
Q Consensus 296 ~~vi~-------------~~~~~~~grtG 311 (333)
..|++ ..|+||+||+|
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~g 364 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTG 364 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCCCCcchheeecccCccc
Confidence 55553 25999999999
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=312.51 Aligned_cols=277 Identities=26% Similarity=0.371 Sum_probs=212.9
Q ss_pred CCCcccccC----CCHHHHHHHHhCCCCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cC
Q psy18032 35 MGGGFQSFG----LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TS 106 (333)
Q Consensus 35 ~~~~f~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~ 106 (333)
...+|+++. |++++++++.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 344666665 99999999999999999999999999999 78899999999999999999999999877431 23
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhc----cCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhc-ccccc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGK----FTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEM-ELKLS 180 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~-~~~~~ 180 (333)
++++||++||++|+.|+++.++.+.. ...+.+..+.|+.....+...+.. +++|+|+||+++++++.+. ...++
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 57999999999999999999999763 245778889999988877777654 7999999999999988765 44677
Q ss_pred CchhhHH----------HHHHHhhc---cc-------cceeeeecCCChHHHHHhhh----cCCcEE-EeC--------C
Q psy18032 181 SIQYTFK----------FVKELGKF---TK-------LQSTCLLGGDSMDNQFARLH----ASPDIV-VAT--------P 227 (333)
Q Consensus 181 ~l~~lV~----------~i~~l~~~---~~-------~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~t--------~ 227 (333)
.++++|+ |.+++..+ ++ ...|++++|||+++.+..+. ..+..+ +.. .
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 7888875 22332222 21 26699999999998776654 233222 221 1
Q ss_pred CceEEEEEecch---h----hh------------hHHHHhhcchhhHHHHHHHhc-----CCCcccccc------chHHH
Q psy18032 228 GRFLHIVVEMEL---K----LS------------SIQLSLTDFKQDTSRIALDLV-----GDSTEMIHK------QRQSV 277 (333)
Q Consensus 228 ~~i~~~~~~~~~---k----~~------------~l~lif~~~~~~~~~l~~~L~-----g~~~~~lh~------~r~~l 277 (333)
..+.+.+..... + .. .-.+|||++++.|+.+++.|. ++.+..+|| +.+.+
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 234444433211 0 00 115899999999999998885 788999998 23456
Q ss_pred hhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 278 RKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
++|++|+.+|||||| +++..||+ ..|+||+||+|
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSS
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccc
Confidence 999999999999999 44666664 55999999999
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=292.97 Aligned_cols=274 Identities=23% Similarity=0.394 Sum_probs=216.5
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|+++++++|.++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++||++|
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 84 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMCH 84 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEECC
Confidence 3679999999999999999999999999999999999999999999999999999999999987652 23568999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK------ 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------ 187 (333)
+++|+.|+++.++++.... ++++..+.|+.+...+...+.+ .++|+|+||+++..++....+.+.+++++|+
T Consensus 85 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~ 164 (391)
T 1xti_A 85 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 164 (391)
T ss_dssp CHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHH
T ss_pred CHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHH
Confidence 9999999999999987765 8999999999988777666655 4899999999999999988888888888885
Q ss_pred -----HHHH---HhhccccceeeeecCCChHHHHHh----hhcCCcEEEeC------CCceEEEEEec--chhhhhH---
Q psy18032 188 -----FVKE---LGKFTKLQSTCLLGGDSMDNQFAR----LHASPDIVVAT------PGRFLHIVVEM--ELKLSSI--- 244 (333)
Q Consensus 188 -----~i~~---l~~~~~~~~~~l~~sAT~~~~v~~----l~~~~~i~~~t------~~~i~~~~~~~--~~k~~~l--- 244 (333)
+... +....+...|.+++|||+++.+.. ....+..+... ...+.+.+... ..+...+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (391)
T 1xti_A 165 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 244 (391)
T ss_dssp TSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHH
T ss_pred hhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHH
Confidence 1112 222334578999999998765433 33444333321 23445555432 2222222
Q ss_pred --------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 245 --------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 245 --------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
.+|||++++.++.+++.|. |+++..+|| +++.+++|++|+.+|||||+ +++..|+.
T Consensus 245 l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~ 324 (391)
T 1xti_A 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN 324 (391)
T ss_dssp HHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE
T ss_pred HHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE
Confidence 5899999999999999996 889999998 33456999999999999998 34455553
Q ss_pred -------cccEEEEccCC
Q psy18032 301 -------GRDVVAMARTG 311 (333)
Q Consensus 301 -------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 325 ~~~p~s~~~~~Qr~GR~~ 342 (391)
T 1xti_A 325 YDMPEDSDTYLHRVARAG 342 (391)
T ss_dssp SSCCSSHHHHHHHHCBCS
T ss_pred eCCCCCHHHHHHhccccc
Confidence 44899999998
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=291.67 Aligned_cols=272 Identities=23% Similarity=0.436 Sum_probs=214.9
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
+...+|++++|++.++++|.++||..|+|+|.++++.++++ +|+++++|||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~l 79 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAI 79 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEE
Confidence 45689999999999999999999999999999999999998 9999999999999999999999987652 2467899
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-H--
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-F-- 188 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~-- 188 (333)
|++|+++|+.|+++.+++++...++.+....++...... ..+++|+|+||+++.+++......+.+++++|+ .
T Consensus 80 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 80 CLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred EECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 999999999999999999998888988888877644332 236899999999999999988888899998885 1
Q ss_pred -----------HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-----CCCceEEEEEecc---hhhhhH-
Q psy18032 189 -----------VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-----TPGRFLHIVVEME---LKLSSI- 244 (333)
Q Consensus 189 -----------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-----t~~~i~~~~~~~~---~k~~~l- 244 (333)
+..+....+...|++++|||+++.+..+. ..+..+.. .+..+.+.+.... .+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 235 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLT 235 (395)
T ss_dssp HHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHH
T ss_pred hhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHH
Confidence 11123334567899999999987765543 23322221 2334555554431 122211
Q ss_pred ----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccc
Q psy18032 245 ----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLV 298 (333)
Q Consensus 245 ----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~v 298 (333)
.+|||++++.++.+++.|. ++.+..+|| +.+.+++|++|+.+|||||+ +++..|
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~V 315 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMV 315 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEE
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEE
Confidence 5899999999999999997 889999998 33556999999999999998 344455
Q ss_pred cc-------------cccEEEEccCC
Q psy18032 299 LE-------------GRDVVAMARTG 311 (333)
Q Consensus 299 i~-------------~~~~~~~grtG 311 (333)
++ ..|+||+||+|
T Consensus 316 i~~~~p~~~~~~~s~~~~~Qr~GR~g 341 (395)
T 3pey_A 316 VNYDLPTLANGQADPATYIHRIGRTG 341 (395)
T ss_dssp EESSCCBCTTSSBCHHHHHHHHTTSS
T ss_pred EEcCCCCCCcCCCCHHHhhHhccccc
Confidence 52 35889999998
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-38 Score=309.26 Aligned_cols=284 Identities=26% Similarity=0.378 Sum_probs=214.1
Q ss_pred CcccccC----CCHHHHHHHHhCCCCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCc
Q psy18032 37 GGFQSFG----LGFEVLKGVLKRGYKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGV 108 (333)
Q Consensus 37 ~~f~~~~----l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~ 108 (333)
.+|+++. |++++++++.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+..... ..++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 4566664 99999999999999999999999999999 67899999999999999999999999877432 2356
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhcc----CCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhc-cccccCc
Q psy18032 109 RALILSPTRELALQTFKFVKELGKF----TKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEM-ELKLSSI 182 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~-~~~~~~l 182 (333)
++|||+||++|+.|+++.++.+... ....+..+.|+.....+...+. .+++|+|+||+++++++.+. ...++.+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999987532 3567888899988877766664 47999999999999988765 3457778
Q ss_pred hhhHH----------HHHHHhhc---c-------ccceeeeecCCChHHHHHhhh----cCCcEE-Ee--------CCCc
Q psy18032 183 QYTFK----------FVKELGKF---T-------KLQSTCLLGGDSMDNQFARLH----ASPDIV-VA--------TPGR 229 (333)
Q Consensus 183 ~~lV~----------~i~~l~~~---~-------~~~~~~l~~sAT~~~~v~~l~----~~~~i~-~~--------t~~~ 229 (333)
+++|+ |.+++..+ + +...|++++|||+++.+..+. ..+..+ .. +...
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 88885 22222222 1 126789999999998776654 223222 21 1223
Q ss_pred eEEEEEecch---h----hh------------hHHHHhhcchhhHHHHHHHhc-----CCCcccccc------chHHHhh
Q psy18032 230 FLHIVVEMEL---K----LS------------SIQLSLTDFKQDTSRIALDLV-----GDSTEMIHK------QRQSVRK 279 (333)
Q Consensus 230 i~~~~~~~~~---k----~~------------~l~lif~~~~~~~~~l~~~L~-----g~~~~~lh~------~r~~l~~ 279 (333)
+.+.+..... + .. .-.+|||++++.|+.++..|. ++++..+|| +.+.+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 4444433211 1 00 125899999999999998885 788999998 2345699
Q ss_pred hCCCCcccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 280 WDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 280 f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
|++|+.+|||||| +++..||+ ..|+||+||+| .|.+..|+.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~ 447 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFIC 447 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEE
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEc
Confidence 9999999999999 44556664 55999999999 344444443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=285.05 Aligned_cols=272 Identities=30% Similarity=0.466 Sum_probs=218.5
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC-CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG-RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
.++|++++|++.++++|+++||..|+|+|.++++.++++ +++++++|||||||++|++|++..+.. ..+.++||++
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~---~~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc---cCCCcEEEEc
Confidence 468999999999999999999999999999999999998 799999999999999999999988765 2467899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|+++|+.|+++.++.+....++.+..+.|+.....+...+. +++|+|+||+++.+.+..+.+.+.+++++|+
T Consensus 82 P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 160 (367)
T 1hv8_A 82 PTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEML 160 (367)
T ss_dssp SCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhh
Confidence 99999999999999998888899999999988777666555 6899999999999999988888888888885
Q ss_pred ---HHHH---HhhccccceeeeecCCChHHHHHhhh----cCCcEEEe-CCCceEEEEEec--chhhhhH----------
Q psy18032 188 ---FVKE---LGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVA-TPGRFLHIVVEM--ELKLSSI---------- 244 (333)
Q Consensus 188 ---~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~~-t~~~i~~~~~~~--~~k~~~l---------- 244 (333)
+... +....+...+.+++|||+++....+. ..+..+.. ....+.+.+... ..+...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 240 (367)
T 1hv8_A 161 NMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKINANIEQSYVEVNENERFEALCRLLKNKEFY 240 (367)
T ss_dssp TTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSSSSSEEEEEECCGGGHHHHHHHHHCSTTCC
T ss_pred hhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCCCCceEEEEEeChHHHHHHHHHHHhcCCCc
Confidence 1222 22233457889999999987654432 33333322 233455555432 2233322
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.+++.|. |+.+..+|| +++.++.|++|+.+|||||+ +++..|+. .
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~ 320 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 320 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHH
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHH
Confidence 4899999999999999997 889999998 23456999999999999998 45566664 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 321 ~~~Q~~GR~~ 330 (367)
T 1hv8_A 321 SYMHRIGRTG 330 (367)
T ss_dssp HHHHHSTTTC
T ss_pred Hhhhcccccc
Confidence 5899999998
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-35 Score=270.77 Aligned_cols=257 Identities=25% Similarity=0.386 Sum_probs=202.9
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
|++++.++|+++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999874 56899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHH
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVK 190 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~ 190 (333)
++.+++++...++++..++|+.....+...+. +++|+|+||+++.+.+....+.+.+++++|+ .+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~ 151 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIK 151 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHH
Confidence 99999998888999999999988877666555 4899999999999999888888888888885 111
Q ss_pred HHhhccccceeeeecCCChHHHHHhh----hcCCcEEEe--CCCceEEEEEecchhh----h-------hHHHHhhcchh
Q psy18032 191 ELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVA--TPGRFLHIVVEMELKL----S-------SIQLSLTDFKQ 253 (333)
Q Consensus 191 ~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~--t~~~i~~~~~~~~~k~----~-------~l~lif~~~~~ 253 (333)
.+....+...+.+++|||+++.+... ...+..+.. ...++.+.+.....+. . .-.+|||++++
T Consensus 152 ~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~ 231 (337)
T 2z0m_A 152 IILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRN 231 (337)
T ss_dssp HHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHH
T ss_pred HHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHH
Confidence 22223345678889999998765443 233433322 2234555544332111 1 11589999999
Q ss_pred hHHHHHHHhcCCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 254 DTSRIALDLVGDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 254 ~~~~l~~~L~g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
.++.+++.|. .+..+|| +.+.+++|++|+.+|||||+ +++..|+. ..|+||+||+|
T Consensus 232 ~~~~l~~~l~--~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~g 308 (337)
T 2z0m_A 232 RVAKLVRLFD--NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTG 308 (337)
T ss_dssp HHHHHHTTCT--TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred HHHHHHHHhh--hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccc
Confidence 9999998887 4677887 33566999999999999998 44455554 45899999999
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=287.42 Aligned_cols=263 Identities=18% Similarity=0.214 Sum_probs=198.2
Q ss_pred CcccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.+|++++|++++.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. .+.+||++|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 479999999999999998 89999999999999999999999999999999999999999854 357999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---h-hCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---L-HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l-~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
+++|+.|+++.++. .++.+..+.|+.+..+.... + ...++|+++||+++........+...++.++|+
T Consensus 74 ~~aL~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH 149 (523)
T 1oyw_A 74 LISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (523)
T ss_dssp CHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred hHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcc
Confidence 99999999999987 47888888888776554322 2 345899999999996433333334456666663
Q ss_pred --------HHHHHhhc---cc--cceeeeecCCChHHHHHh-----hh-cCCcEEEeCC--CceEEEEEecchhhhh---
Q psy18032 188 --------FVKELGKF---TK--LQSTCLLGGDSMDNQFAR-----LH-ASPDIVVATP--GRFLHIVVEMELKLSS--- 243 (333)
Q Consensus 188 --------~i~~l~~~---~~--~~~~~l~~sAT~~~~v~~-----l~-~~~~i~~~t~--~~i~~~~~~~~~k~~~--- 243 (333)
|..++..+ .. ...+++++|||.++.+.. +. ..+.+.+... .++...+.....+...
T Consensus 150 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~ 229 (523)
T 1oyw_A 150 CISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMR 229 (523)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHH
T ss_pred ccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHH
Confidence 11222211 11 247789999999765432 22 3455555432 3455555443333222
Q ss_pred --------HHHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCccccc
Q psy18032 244 --------IQLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 244 --------l~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
-.+|||++++.++.+++.|. |+.+..+|| +| +.+++|++|+.+|||||+ +++..||
T Consensus 230 ~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI 309 (523)
T 1oyw_A 230 YVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (523)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEE
T ss_pred HHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEE
Confidence 25899999999999999997 899999998 23 456999999999999998 4455555
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
+ ..|+||+||+|
T Consensus 310 ~~~~p~s~~~y~Qr~GRaG 328 (523)
T 1oyw_A 310 HFDIPRNIESYYQETGRAG 328 (523)
T ss_dssp ESSCCSSHHHHHHHHTTSC
T ss_pred EECCCCCHHHHHHHhcccc
Confidence 4 34999999999
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=280.69 Aligned_cols=255 Identities=14% Similarity=0.106 Sum_probs=196.0
Q ss_pred HHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 46 FEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 46 ~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
+++.+.+++ +|| .|+|+|.++++.+++|+|++++||||||||++|++|++..+.. ++++||++||++|+.|++
T Consensus 8 ~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~-----~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 8 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECCHHHHHHHH
Confidence 345566666 477 5999999999999999999999999999999999999887633 779999999999999999
Q ss_pred HHHHHHhccCCceEEEEECCcch---HHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH-H-----------
Q psy18032 125 KFVKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-F----------- 188 (333)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~----------- 188 (333)
+.++.++. .++++..++|+.+. ..+...+..+ ++|+|+||+++.+++.. +.+.+++++|+ .
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~ 158 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNI 158 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchh
Confidence 99999988 89999999999987 5555666665 99999999999887764 55667777774 1
Q ss_pred -------------HHHHhhccc-----------cceeeeecCCC-hHHHHH-----hhhc-CCcEEEeCCCceEEEEEec
Q psy18032 189 -------------VKELGKFTK-----------LQSTCLLGGDS-MDNQFA-----RLHA-SPDIVVATPGRFLHIVVEM 237 (333)
Q Consensus 189 -------------i~~l~~~~~-----------~~~~~l~~sAT-~~~~v~-----~l~~-~~~i~~~t~~~i~~~~~~~ 237 (333)
+..+...++ ...|++++||| .++.+. .+.. ........+.++.+.+...
T Consensus 159 d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (414)
T 3oiy_A 159 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS 238 (414)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEESS
T ss_pred hhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeecc
Confidence 222223333 67899999999 443322 1211 1111112345666666544
Q ss_pred chhhh----------hHHHHhhcchhhHHHHHHHhc--CCCcc-cccc-chHHHhhhCCCCcccccc----cc-------
Q psy18032 238 ELKLS----------SIQLSLTDFKQDTSRIALDLV--GDSTE-MIHK-QRQSVRKWDPAKKKYVQV----TD------- 292 (333)
Q Consensus 238 ~~k~~----------~l~lif~~~~~~~~~l~~~L~--g~~~~-~lh~-~r~~l~~f~~g~~~vLva----Td------- 292 (333)
+ +.. .-.+|||++++.|+.++..|. |+++. .+|| +|+ +++|++|+++|||| ||
T Consensus 239 ~-~~~~l~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~~r~-~~~f~~g~~~vLvat~s~T~~~~~GiD 316 (414)
T 3oiy_A 239 R-SKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYGKLTRGVD 316 (414)
T ss_dssp C-CHHHHHHHHHHHCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCHHHH-HHHHHTTSCSEEEEECCTTCCCCCCCC
T ss_pred C-HHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCcchH-HHHHhCCCCeEEEEecCcCchhhccCc
Confidence 2 111 125899999999999999997 89998 9999 556 99999999999999 88
Q ss_pred -CC-cccccc---------cccEEEEccCC
Q psy18032 293 -DT-IPLVLE---------GRDVVAMARTG 311 (333)
Q Consensus 293 -~~-i~~vi~---------~~~~~~~grtG 311 (333)
++ ++.||+ ..|+||+||+|
T Consensus 317 ip~~v~~VI~~~~p~~~~~~~y~qr~GR~g 346 (414)
T 3oiy_A 317 LPERIKYVIFWGTPSGPDVYTYIQASGRSS 346 (414)
T ss_dssp CTTTCCEEEEESCCTTTCHHHHHHHHGGGC
T ss_pred cccccCEEEEECCCCCCCHHHHHHHhCccc
Confidence 44 556663 36999999999
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=284.29 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=193.7
Q ss_pred cccccCCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQSFGLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.++++++++++.+.|++ +||..|+|+|.++|+.+++|+|+++++|||+|||+||++|++.. ++++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 34568999999999998 69999999999999999999999999999999999999999863 4589999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh------hCCCCEEEECchHHH------HHHHhccccccCchh
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------HASPDIVVATPGRFL------HIVVEMELKLSSIQY 184 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l------~~~~~IlI~TP~rll------~~l~~~~~~~~~l~~ 184 (333)
++|+.|+++.++.+ |+.+..+.|+.+..+..... ..+++|+|+||++|. +.+. ....+..+.+
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~ 168 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRFTR 168 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCEEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCCcE
Confidence 99999999999985 78888888888766554332 346899999999874 2222 2334556666
Q ss_pred hHH------------HHHHHhhc-----cccceeeeecCCChHHHHHhh----h--cCCcEEEeC--CCceEEEEEecch
Q psy18032 185 TFK------------FVKELGKF-----TKLQSTCLLGGDSMDNQFARL----H--ASPDIVVAT--PGRFLHIVVEMEL 239 (333)
Q Consensus 185 lV~------------~i~~l~~~-----~~~~~~~l~~sAT~~~~v~~l----~--~~~~i~~~t--~~~i~~~~~~~~~ 239 (333)
+|+ |..++..+ .....+++++|||+++.+... . ..+.++... ..++.+.+.....
T Consensus 169 iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~ 248 (591)
T 2v1x_A 169 IAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPS 248 (591)
T ss_dssp EEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCS
T ss_pred EEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCC
Confidence 663 11111110 012578999999998765332 2 223333332 2345544443211
Q ss_pred ----hhh------------hHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc---
Q psy18032 240 ----KLS------------SIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--- 292 (333)
Q Consensus 240 ----k~~------------~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--- 292 (333)
+.. .-.+|||++++.++.+++.|. |+.+..+|| +++.+++|++|+.+|||||+
T Consensus 249 ~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~ 328 (591)
T 2v1x_A 249 NTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFG 328 (591)
T ss_dssp SHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSC
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 111 115899999999999999996 899999998 33556999999999999998
Q ss_pred -----CCcccccc-------cccEEEEccCC
Q psy18032 293 -----DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 293 -----~~i~~vi~-------~~~~~~~grtG 311 (333)
+++..||+ ..|+||+||+|
T Consensus 329 ~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaG 359 (591)
T 2v1x_A 329 MGIDKPDVRFVIHHSMSKSMENYYQESGRAG 359 (591)
T ss_dssp TTCCCSCEEEEEESSCCSSHHHHHHHHTTSC
T ss_pred cCCCcccccEEEEeCCCCCHHHHHHHhccCC
Confidence 34445553 34999999999
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=246.84 Aligned_cols=189 Identities=27% Similarity=0.434 Sum_probs=166.8
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc---cc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---AT 105 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---~~ 105 (333)
+...+++..+|+++++++.+++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+...+ ..
T Consensus 21 ~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 100 (242)
T 3fe2_A 21 GHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERG 100 (242)
T ss_dssp SSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTT
T ss_pred CCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccC
Confidence 344577889999999999999999999999999999999999999999999999999999999999999987532 13
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
.++++||++||++|+.|+++.++.++...++++..++||.+...+...+.++++|+|+||+++.+++..+...+++++++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~l 180 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEE
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEE
Confidence 47789999999999999999999999889999999999999988888888899999999999999999888889999999
Q ss_pred HH-------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 186 FK-------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 186 V~-------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
|+ .+..+.+.++...|++++|||+++.+..+.
T Consensus 181 ViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp EETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred EEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHH
Confidence 85 222233444567899999999998876654
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-32 Score=249.63 Aligned_cols=186 Identities=26% Similarity=0.452 Sum_probs=156.1
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
....+|++++|++.++++|.++||..||++|.++||.++.| +|++++||||||||++|++|+++++... ..++++|
T Consensus 89 ~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~l 166 (300)
T 3fmo_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCL 166 (300)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEE
T ss_pred CCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEE
Confidence 35679999999999999999999999999999999999998 9999999999999999999999998763 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH--
Q psy18032 112 ILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK-- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~-- 187 (333)
|++||++||.|+++.++.++... ++.+..++|+....... ..+++|+|+||++|++++.+ +.+.+++++++|+
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 99999999999999999998764 78888888887654422 45789999999999999966 5678899999995
Q ss_pred ---------H---HHHHhhccccceeeeecCCChHHHHHhhh----cCCcEEE
Q psy18032 188 ---------F---VKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVV 224 (333)
Q Consensus 188 ---------~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~~ 224 (333)
+ +..+.+.++..+|+++||||+++.+..+. ++|.++.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 1 11233445667999999999998877654 4555443
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=296.43 Aligned_cols=234 Identities=14% Similarity=0.104 Sum_probs=182.1
Q ss_pred HHHHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 48 VLKGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 48 l~~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+.+.+. .+||+ |||+|.+++|.+++|+|++++||||||||++|+++++..+.. ++++||++||++||.|+++.
T Consensus 67 ~~~~~~~~~gf~-pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~-----~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 67 FRSFFKKKFGKD-LTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHHSSSC-CCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCeEEEEechHHHHHHHHHH
Confidence 344444 47895 999999999999999999999999999999999998887743 77999999999999999999
Q ss_pred HHHHhccCCceEEEEECCcch---HHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH-H-------------
Q psy18032 127 VKELGKFTKLQSTCLLGGDSM---DNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-F------------- 188 (333)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~------------- 188 (333)
++.++ ..++++..++|+.+. .++...+.++ ++|+|+||++|++++.. +.+++++++|+ .
T Consensus 141 l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr 217 (1104)
T 4ddu_A 141 LQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDT 217 (1104)
T ss_dssp HHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHH
T ss_pred HHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchh
Confidence 99987 778999999999987 6666777766 99999999999888764 56677787775 1
Q ss_pred -----------HHHHhhccc-----------cceeeeecCCC-hHHHHH-----hhhc-CCcEEEeCCCceEEEEEecch
Q psy18032 189 -----------VKELGKFTK-----------LQSTCLLGGDS-MDNQFA-----RLHA-SPDIVVATPGRFLHIVVEMEL 239 (333)
Q Consensus 189 -----------i~~l~~~~~-----------~~~~~l~~sAT-~~~~v~-----~l~~-~~~i~~~t~~~i~~~~~~~~~ 239 (333)
+..+.+.++ ...|++++||| .++.+. .... .......++.++.+.+...+
T Consensus 218 ~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~~- 296 (1104)
T 4ddu_A 218 LLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISSR- 296 (1104)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESCC-
T ss_pred hhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEecC-
Confidence 122223333 67899999999 443322 1111 11111124556777776543
Q ss_pred hhhh----------HHHHhhcchhhHHHHHHHhc--CCCcc-cccc-chHHHhhhCCCCcccccc----cc
Q psy18032 240 KLSS----------IQLSLTDFKQDTSRIALDLV--GDSTE-MIHK-QRQSVRKWDPAKKKYVQV----TD 292 (333)
Q Consensus 240 k~~~----------l~lif~~~~~~~~~l~~~L~--g~~~~-~lh~-~r~~l~~f~~g~~~vLva----Td 292 (333)
+... -.+|||++++.++.++..|. |+++. .+|| +++ +++|++|+++|||| ||
T Consensus 297 k~~~L~~ll~~~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~rr~-l~~F~~G~~~VLVatas~Td 366 (1104)
T 4ddu_A 297 SKEKLVELLEIFRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEFEKN-FEDFKVGKINILIGVQAYYG 366 (1104)
T ss_dssp CHHHHHHHHHHHCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSHHHH-HHHHHHTSCSEEEEETTTHH
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCcHHH-HHHHHCCCCCEEEEecCCCC
Confidence 2221 25899999999999999996 89998 9999 456 99999999999999 88
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=236.77 Aligned_cols=189 Identities=27% Similarity=0.476 Sum_probs=159.9
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++++++++++++++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++||++|
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~P 80 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAP 80 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcC
Confidence 4689999999999999999999999999999999999999999999999999999999999998752 34678999999
Q ss_pred cHHHHHHHHHHHHHHhccC----CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+.|+++.+++++... ++.+..++|+.+...+.+.+.++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 81 t~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 81 TRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp SHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred cHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 9999999999999988766 78899999998877766666678999999999999999988888889998885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhh----hcCCcEEEeC
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARL----HASPDIVVAT 226 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l----~~~~~i~~~t 226 (333)
.+..+...++...|++++|||+++.+..+ .++|..+...
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 22233344556789999999998765544 4566555443
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-32 Score=237.77 Aligned_cols=185 Identities=31% Similarity=0.489 Sum_probs=160.6
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
.......+|++++++++++++|+++||..|+++|.++++.+++|+|++++||||||||++|++|++..+... ..++++
T Consensus 37 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--~~~~~~ 114 (249)
T 3ber_A 37 VEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--PQRLFA 114 (249)
T ss_dssp HHHHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CCSSCE
T ss_pred CcccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--CCCceE
Confidence 344556789999999999999999999999999999999999999999999999999999999999988763 336789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++++..++|+.....+...+.++++|+|+||+++.+.+.. +.+.+++++++|+
T Consensus 115 lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDE 194 (249)
T 3ber_A 115 LVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194 (249)
T ss_dssp EEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECS
T ss_pred EEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcC
Confidence 9999999999999999999988889999999999988887777888999999999999998876 5567888888885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|++++|||+++.+.++.
T Consensus 195 ah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~ 235 (249)
T 3ber_A 195 ADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQ 235 (249)
T ss_dssp HHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHH
T ss_pred hhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHH
Confidence 122333444567899999999998876653
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=235.78 Aligned_cols=188 Identities=28% Similarity=0.483 Sum_probs=156.1
Q ss_pred CcccccCCCcccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc----
Q psy18032 29 GDKKKKMGGGFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA---- 103 (333)
Q Consensus 29 ~~~~~~~~~~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~---- 103 (333)
....+++..+|++ +++++++++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+....
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4455678899999 89999999999999999999999999999999999999999999999999999999876421
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 104 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
...++++||++||++|+.|+++.++.+. ..++++..++|+.....+...+.++++|+|+||+++.+++......+++++
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2357889999999999999999999986 468899999999988888888888999999999999999998888899999
Q ss_pred hhHH-------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 184 YTFK-------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 184 ~lV~-------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
++|+ .+..+....+...|++++|||+++.+.++.
T Consensus 170 ~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 170 YLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp EEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred EEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHH
Confidence 9885 122233334567899999999998877664
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=229.50 Aligned_cols=180 Identities=29% Similarity=0.560 Sum_probs=157.7
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 3579999999999999999999999999999999999999999999999999999999999987652 34678999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|++|+.|+++.++.+.... ++++..+.|+....++...+.++++|+|+||+++.+.+.++...+++++++|+
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 159 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhH
Confidence 9999999999999998776 78999999999988887888888999999999999999988888889999885
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|.+++|||+++.+..+.
T Consensus 160 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 195 (206)
T 1vec_A 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHH
T ss_pred hhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHH
Confidence 222333334557899999999988776543
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=6.5e-32 Score=236.29 Aligned_cols=185 Identities=29% Similarity=0.472 Sum_probs=148.8
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceE
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRA 110 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~ 110 (333)
+.++...+|++++++++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++
T Consensus 24 ~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~ 101 (237)
T 3bor_A 24 NWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQA 101 (237)
T ss_dssp ---CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCE
T ss_pred CCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceE
Confidence 344567899999999999999999999999999999999999999999999999999999999999988652 246799
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCC-CCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS-PDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++.+..++|+.....+...+..+ ++|+|+||+++.+++..+.+.++.++++|+
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 99999999999999999999988899999999998877776666665 999999999999999988888888998885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++...|++++|||+++.+..+.
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 222 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVT 222 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHH
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHH
Confidence 122233334567899999999988776553
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=237.94 Aligned_cols=184 Identities=33% Similarity=0.454 Sum_probs=155.9
Q ss_pred cCCCcccccC--CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCce
Q psy18032 34 KMGGGFQSFG--LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVR 109 (333)
Q Consensus 34 ~~~~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~ 109 (333)
....+|++++ ++++++++++++||..|+++|.++++.++.|+|++++||||||||++|++|+++.+.... ...+++
T Consensus 49 ~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 128 (262)
T 3ly5_A 49 FEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTG 128 (262)
T ss_dssp SGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCC
T ss_pred cccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCce
Confidence 3445778877 999999999999999999999999999999999999999999999999999999887532 224778
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH-
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~- 187 (333)
+||++||++|+.|+++.+++++...+..+..++|+.....+...+..+++|+|+||+++.+++... .+.+++++++|+
T Consensus 129 ~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViD 208 (262)
T 3ly5_A 129 VLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVID 208 (262)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEc
Confidence 999999999999999999999988899999999999988888888888999999999999888765 367888888885
Q ss_pred ------------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ------------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ------------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++...|++++|||+++.+..+.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~ 250 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLA 250 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHH
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 223344445667899999999998887764
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.3e-32 Score=238.55 Aligned_cols=183 Identities=32% Similarity=0.521 Sum_probs=159.5
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-------ccCC
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-------ATSG 107 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-------~~~~ 107 (333)
+..+|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... ...+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 567899999999999999999999999999999999999999999999999999999999999987532 1235
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 108 VRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 108 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
+++||++||++|+.|+++.++.++...++.+..++|+.+...+...+..+++|+|+||+++.+++..+.+.+++++++|+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 79999999999999999999999888899999999999988888888888999999999999999998888899999885
Q ss_pred ----------HHHHHhhcc-----cc--ceeeeecCCChHHHHHhhh
Q psy18032 188 ----------FVKELGKFT-----KL--QSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ----------~i~~l~~~~-----~~--~~~~l~~sAT~~~~v~~l~ 217 (333)
|..++..++ +. ..|++++|||+++.+..+.
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~ 227 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLA 227 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHH
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHH
Confidence 222233222 22 6789999999998876654
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-31 Score=231.39 Aligned_cols=186 Identities=27% Similarity=0.384 Sum_probs=153.8
Q ss_pred CcccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCc
Q psy18032 29 GDKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGV 108 (333)
Q Consensus 29 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 108 (333)
.+..+....+|++++++++++++|+++||..|+++|.++++.+++|+|+++++|||||||++|++|++..+... ..++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~ 93 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLST 93 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSC
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCc
Confidence 44455667899999999999999999999999999999999999999999999999999999999999988652 2367
Q ss_pred eEEEEcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH
Q psy18032 109 RALILSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187 (333)
Q Consensus 109 ~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~ 187 (333)
++||++||++|+.|+++.++.++... ++++..+.|+....++...+ ++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 94 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 94 QILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 99999999999999999999987665 88999999998877765555 46999999999999999888888888888885
Q ss_pred -H-------------HHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -F-------------VKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -~-------------i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
+ +..+...++...|++++|||+++.+..+.
T Consensus 173 DEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 173 DEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp SSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred CCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHH
Confidence 1 11222334557899999999998876654
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=272.75 Aligned_cols=124 Identities=19% Similarity=0.237 Sum_probs=107.2
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+|| +|+|+|..++|.++.|+ +++++||+|||++|.+|++..... ++.++||+||++||.|..+++..++++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~-----g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT-----GKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 5799 89999999999999999 999999999999999999855433 568999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
+|+++.+++||.+...+ ....+|+|+|+||++| .+++... .+.++.++++|+
T Consensus 151 lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVI 209 (844)
T ss_dssp TTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEE
Confidence 99999999999876553 3334799999999999 5665543 466788888885
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-32 Score=274.80 Aligned_cols=264 Identities=17% Similarity=0.241 Sum_probs=197.9
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
++|++++|++++.+.+++.||..|+|+|.++++. +.+++|++++||||||||++|.+|++..+... +++++|++|
T Consensus 1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P 76 (720)
T 2zj8_A 1 MRVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVP 76 (720)
T ss_dssp CBGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECS
T ss_pred CcHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcC
Confidence 5799999999999999999999999999999999 88999999999999999999999999888742 579999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh--
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG-- 193 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~-- 193 (333)
+++|+.|+++.++.+.. .|+++..++|+...... ...+++|+|+||+++..++.+....+++++++|+ |+.+
T Consensus 77 ~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi--DE~H~l 150 (720)
T 2zj8_A 77 LKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVA--DEIHLI 150 (720)
T ss_dssp SGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEE--ETGGGG
T ss_pred cHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEE--ECCccc
Confidence 99999999999976654 48999999998765442 1236899999999999988887666888888884 3332
Q ss_pred -------------hccccceeeeecCCChH--HHHHhhhcCCcEEEe--CCCceEEEEE--------e-----cchhhh-
Q psy18032 194 -------------KFTKLQSTCLLGGDSMD--NQFARLHASPDIVVA--TPGRFLHIVV--------E-----MELKLS- 242 (333)
Q Consensus 194 -------------~~~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~--t~~~i~~~~~--------~-----~~~k~~- 242 (333)
..++...+++++|||++ +.+..+.... .+.. .|-.+...+. . ......
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~~~~~~~l~~~-~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNPEELAEWLNAE-LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCHHHHHHHTTEE-EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCHHHHHHHhCCc-ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 12223689999999985 4555543221 1111 1111111110 0 011111
Q ss_pred --------hHHHHhhcchhhHHHHHHHhcC-----------------------------------CCcccccc-----ch
Q psy18032 243 --------SIQLSLTDFKQDTSRIALDLVG-----------------------------------DSTEMIHK-----QR 274 (333)
Q Consensus 243 --------~l~lif~~~~~~~~~l~~~L~g-----------------------------------~~~~~lh~-----~r 274 (333)
.-.+|||+++++++.++..|.. ..+..+|| +|
T Consensus 230 ~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 309 (720)
T 2zj8_A 230 VYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDER 309 (720)
T ss_dssp HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHH
Confidence 1258999999999999877741 13677887 33
Q ss_pred -HHHhhhCCCCcccccccc--------CCcccccc---------------cccEEEEccCC
Q psy18032 275 -QSVRKWDPAKKKYVQVTD--------DTIPLVLE---------------GRDVVAMARTG 311 (333)
Q Consensus 275 -~~l~~f~~g~~~vLvaTd--------~~i~~vi~---------------~~~~~~~grtG 311 (333)
..++.|++|+++|||||+ +++..||+ ..|+||+||+|
T Consensus 310 ~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaG 370 (720)
T 2zj8_A 310 VLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAG 370 (720)
T ss_dssp HHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBC
T ss_pred HHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcC
Confidence 455999999999999998 45555554 23788999999
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-32 Score=271.12 Aligned_cols=267 Identities=18% Similarity=0.214 Sum_probs=197.7
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
..++|++++|++++.+.+++.||..|+|+|.++++. +.+++|++++||||||||++|.+|+++.+.. .+++++|+
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~il~i 81 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK----NGGKAIYV 81 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH----SCSEEEEE
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH----CCCeEEEE
Confidence 347899999999999999999999999999999999 8889999999999999999999999998774 26799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG 193 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~ 193 (333)
+|+++|+.|+++.++.+.. .|+++...+|+....+. .+ .+++|+|+||+++..++.+....+++++++|+ |+.+
T Consensus 82 ~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi--DE~H 155 (715)
T 2va8_A 82 TPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVL--DELH 155 (715)
T ss_dssp CSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEE--CSGG
T ss_pred eCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEE--echh
Confidence 9999999999999965543 58999999988765442 12 36899999999999998887666888888884 3322
Q ss_pred hcc------------c--cceeeeecCCChH--HHHHhhhcCCcEEEe-CCCceEEEE--------------Ee------
Q psy18032 194 KFT------------K--LQSTCLLGGDSMD--NQFARLHASPDIVVA-TPGRFLHIV--------------VE------ 236 (333)
Q Consensus 194 ~~~------------~--~~~~~l~~sAT~~--~~v~~l~~~~~i~~~-t~~~i~~~~--------------~~------ 236 (333)
.+. . ...+++++|||++ +.+..+...+.+... .|-.+...+ ..
T Consensus 156 ~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAKRRNLLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKV 235 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHHTSEEEEEESCCTTHHHHHHHHTCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEE
T ss_pred hcCCcccchHHHHHHHhcccCcEEEEcCCCCCHHHHHHHhCCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhc
Confidence 211 0 1688999999985 445554432111100 111111111 00
Q ss_pred --cchhhh---------hHHHHhhcchhhHHHHHHHhcC--------------------------------------CCc
Q psy18032 237 --MELKLS---------SIQLSLTDFKQDTSRIALDLVG--------------------------------------DST 267 (333)
Q Consensus 237 --~~~k~~---------~l~lif~~~~~~~~~l~~~L~g--------------------------------------~~~ 267 (333)
...... .-.+|||+++++++.++..|.. ..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v 315 (715)
T 2va8_A 236 HGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGV 315 (715)
T ss_dssp ESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTE
T ss_pred ccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCE
Confidence 011111 1258999999999999988751 136
Q ss_pred ccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc------------------cccEEEEccCC
Q psy18032 268 EMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE------------------GRDVVAMARTG 311 (333)
Q Consensus 268 ~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~------------------~~~~~~~grtG 311 (333)
..+|| +| ..++.|++|+++|||||+ +++..||+ ..|.||+||+|
T Consensus 316 ~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaG 391 (715)
T 2va8_A 316 AYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAG 391 (715)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBC
T ss_pred EEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcC
Confidence 77887 34 445889999999999998 45555554 24778999999
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-33 Score=278.01 Aligned_cols=263 Identities=15% Similarity=0.167 Sum_probs=194.3
Q ss_pred CcccccC--CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 37 GGFQSFG--LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 37 ~~f~~~~--l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++|++++ |++++.+.+++.||+.|+|+|.++++.+.+++|++++||||||||++|.+|++..+.. +++++|++
T Consensus 1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~ 75 (702)
T 2p6r_A 1 MKVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVV 75 (702)
T ss_dssp CCSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEE
T ss_pred CchhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEe
Confidence 5799999 9999999999999999999999999999999999999999999999999999998765 56899999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK 194 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~ 194 (333)
|+++|+.|+++.++.+.. .|+++...+|+....+. ...+++|+|+||+++..++.+....+++++++|+ |+.+.
T Consensus 76 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIi--DE~H~ 149 (702)
T 2p6r_A 76 PLRALAGEKYESFKKWEK-IGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV--DEIHL 149 (702)
T ss_dssp SSHHHHHHHHHHHTTTTT-TTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE--TTGGG
T ss_pred CcHHHHHHHHHHHHHHHh-cCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEE--eeeee
Confidence 999999999999965543 58999999998765442 1236899999999999998887666888888884 33222
Q ss_pred c------------------cccceeeeecCCChH--HHHHhhhcCCcEEEe--CCCceEEEE--------Eecch-----
Q psy18032 195 F------------------TKLQSTCLLGGDSMD--NQFARLHASPDIVVA--TPGRFLHIV--------VEMEL----- 239 (333)
Q Consensus 195 ~------------------~~~~~~~l~~sAT~~--~~v~~l~~~~~i~~~--t~~~i~~~~--------~~~~~----- 239 (333)
+ .....+++++|||++ ..+..+...+ ++.. .|-.+...+ .....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~-~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDAD-YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCE-EEECCCCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCCHHHHHHHhCCC-cccCCCCCccceEEEeeCCeeeccCcchhhhhh
Confidence 1 134689999999986 3444443322 1111 111111111 11000
Q ss_pred --hhh---------hHHHHhhcchhhHHHHHHHhcC--------------------------------CCcccccc----
Q psy18032 240 --KLS---------SIQLSLTDFKQDTSRIALDLVG--------------------------------DSTEMIHK---- 272 (333)
Q Consensus 240 --k~~---------~l~lif~~~~~~~~~l~~~L~g--------------------------------~~~~~lh~---- 272 (333)
... .-.+|||+++++++.++..|.. ..+..+||
T Consensus 229 ~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 308 (702)
T 2p6r_A 229 VKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLN 308 (702)
T ss_dssp CCHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCH
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCH
Confidence 111 1258999999999999877741 24677887
Q ss_pred -chH-HHhhhCCCCcccccccc--------CCcccccc--------------cccEEEEccCC
Q psy18032 273 -QRQ-SVRKWDPAKKKYVQVTD--------DTIPLVLE--------------GRDVVAMARTG 311 (333)
Q Consensus 273 -~r~-~l~~f~~g~~~vLvaTd--------~~i~~vi~--------------~~~~~~~grtG 311 (333)
+|+ .++.|++|+++|||||+ +++..||+ ..|+||+||+|
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaG 371 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAG 371 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcC
Confidence 343 45889999999999998 44455554 24889999999
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=227.39 Aligned_cols=183 Identities=30% Similarity=0.455 Sum_probs=150.8
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
-++...+|+++++++.+++.+.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+... ..++++|
T Consensus 9 ~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~l 86 (224)
T 1qde_A 9 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQAL 86 (224)
T ss_dssp CCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEE
T ss_pred cCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEE
Confidence 34566889999999999999999999999999999999999999999999999999999999999988652 3467999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|++|+++|+.|+++.++.++...++++..+.|+.+..++...+.+ ++|+|+||+++.+.+..+...+++++++|+
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999999999999988889999999999887776665554 999999999999999988888888988885
Q ss_pred ---------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ---------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ---------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|.+++|||+++.+..+.
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~ 204 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 204 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHH
Confidence 122333344567899999999988776543
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-32 Score=285.46 Aligned_cols=269 Identities=16% Similarity=0.174 Sum_probs=199.6
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
...|+.+++++.+...+...++-.|+|+|.++++.+.+|+|++++||||||||++|.+|++..+.. ++++||++|
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~P 235 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSP 235 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEES
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcC
Confidence 347888888888877776666667999999999999999999999999999999999999998865 679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
|++|++|+++.++.++. .+..++|+.+.. .+++|+|+||++|.+++.++...+++++++|+
T Consensus 236 traLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 236 IKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp SHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS
T ss_pred cHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc
Confidence 99999999999998654 577788887643 36899999999999999988877888888885
Q ss_pred -----HHHHHhhccccceeeeecCCChHH--HHHhh----hcCCcEEEeC---CCceEEEEEec----------------
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDN--QFARL----HASPDIVVAT---PGRFLHIVVEM---------------- 237 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~--~v~~l----~~~~~i~~~t---~~~i~~~~~~~---------------- 237 (333)
.+..+...++...|++++|||+++ ++..+ ...+..++.+ |..+.+++...
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchh
Confidence 234444556778999999999864 33333 2333333221 22233332110
Q ss_pred -----------------------------------------chhhhh-----------HHHHhhcchhhHHHHHHHhcC-
Q psy18032 238 -----------------------------------------ELKLSS-----------IQLSLTDFKQDTSRIALDLVG- 264 (333)
Q Consensus 238 -----------------------------------------~~k~~~-----------l~lif~~~~~~~~~l~~~L~g- 264 (333)
..+... -++|||++++.|+.++..|..
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 000000 148899999999999988862
Q ss_pred -CC---------------------------------------cccccc------chHHHhhhCCCCcccccccc------
Q psy18032 265 -DS---------------------------------------TEMIHK------QRQSVRKWDPAKKKYVQVTD------ 292 (333)
Q Consensus 265 -~~---------------------------------------~~~lh~------~r~~l~~f~~g~~~vLvaTd------ 292 (333)
+. +..+|| +...++.|++|+++|||||+
T Consensus 465 ~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GI 544 (1108)
T 3l9o_A 465 DFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGL 544 (1108)
T ss_dssp HHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCC
Confidence 22 467887 33456999999999999999
Q ss_pred --CCcccccc---------------cccEEEEccCC-Cc---hhhHHHh
Q psy18032 293 --DTIPLVLE---------------GRDVVAMARTG-SG---KTACFLF 320 (333)
Q Consensus 293 --~~i~~vi~---------------~~~~~~~grtG-~g---~~~~~~l 320 (333)
+++..||+ +.|+||+||+| .| ...++++
T Consensus 545 DiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill 593 (1108)
T 3l9o_A 545 NMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMM 593 (1108)
T ss_dssp CC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEE
T ss_pred CCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEE
Confidence 55666774 12889999999 44 4444443
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=225.52 Aligned_cols=184 Identities=33% Similarity=0.522 Sum_probs=154.1
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRA 110 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~ 110 (333)
.+...+|+++++++.++++|.++||..|+++|.++++.+++|+|+++++|||||||++|++|+++.+.... ...++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 35567899999999999999999999999999999999999999999999999999999999999886532 1246789
Q ss_pred EEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc-cccccCchhhHH--
Q psy18032 111 LILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM-ELKLSSIQYTFK-- 187 (333)
Q Consensus 111 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~-~~~~~~l~~lV~-- 187 (333)
||++||++|+.|+++.++.++...++.+..++|+.+...+...+ .+++|+|+||+++.+.+... .+.+++++++|+
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888889999999998877665555 47999999999999888765 467788888885
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++...|++++|||+++.+..+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 220 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLA 220 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHH
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHH
Confidence 112233334567899999999998876654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=268.21 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=132.1
Q ss_pred HHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 49 LKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 49 ~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
.+++..+||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+...+...++++||++||++|+.|+.+.++
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999998876443334789999999999999999999
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhh-------------
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGK------------- 194 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~------------- 194 (333)
+++...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+++++++|+ |+.+.
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vVi--DEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIF--DECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEE--ETGGGCSTTCHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEE--eCCCcccCcccHHHHHHH
Confidence 9988789999999999877666666667899999999999999998877 7888999984 33322
Q ss_pred --------ccccceeeeecCCChH
Q psy18032 195 --------FTKLQSTCLLGGDSMD 210 (333)
Q Consensus 195 --------~~~~~~~~l~~sAT~~ 210 (333)
..+...+.+++|||..
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccc
Confidence 1134578999999974
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=220.69 Aligned_cols=179 Identities=36% Similarity=0.503 Sum_probs=154.2
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~P 115 (333)
++|+++++++++++.+++.||..|+++|.++++.+++|+|+++++|||||||++|++|++..+.... ...++++||++|
T Consensus 1 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred CChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 4799999999999999999999999999999999999999999999999999999999999986432 134679999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
+++|+.|+++.++.+... +++..++|+.....+...+.++++|+|+||+++.+++..+.+.+++++++|+
T Consensus 81 ~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 81 TRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp SHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc
Confidence 999999999999998653 7788899998887777777788999999999999999988888899999885
Q ss_pred -----HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+....+...|.+++|||+++.+..+.
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHH
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHH
Confidence 222233334567899999999988766543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-30 Score=222.65 Aligned_cols=182 Identities=28% Similarity=0.489 Sum_probs=152.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
....++|++++|+++++++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~li 87 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLV 87 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEE
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEE
Confidence 3445689999999999999999999999999999999999999999999999999999999999987652 23568999
Q ss_pred EcccHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH---
Q psy18032 113 LSPTRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK--- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--- 187 (333)
++||++|+.|+++.++++.... ++++..+.|+.+...+...+.+ .++|+|+||+++.+++....+.+++++++|+
T Consensus 88 l~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEa 167 (220)
T 1t6n_A 88 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDEC 167 (220)
T ss_dssp ECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESH
T ss_pred EeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCH
Confidence 9999999999999999988765 8999999999888777666655 4799999999999999988888889998885
Q ss_pred --------HHHH---HhhccccceeeeecCCChHHHHHhh
Q psy18032 188 --------FVKE---LGKFTKLQSTCLLGGDSMDNQFARL 216 (333)
Q Consensus 188 --------~i~~---l~~~~~~~~~~l~~sAT~~~~v~~l 216 (333)
+... +.+..+...|++++|||+++.+..+
T Consensus 168 h~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~ 207 (220)
T 1t6n_A 168 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 207 (220)
T ss_dssp HHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHH
T ss_pred HHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHH
Confidence 1122 2233445789999999998665544
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-32 Score=283.13 Aligned_cols=229 Identities=17% Similarity=0.130 Sum_probs=174.6
Q ss_pred HHHH-hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHH
Q psy18032 50 KGVL-KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 50 ~~l~-~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
+.+. .+||. | ++|.++||.+++|+|++++||||||||+ |.+|++..+.. .++++||++||++||.|+++.++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeEEEEeccHHHHHHHHHHHH
Confidence 4444 47999 9 9999999999999999999999999998 99999988765 36799999999999999999999
Q ss_pred HHhccCCc----eEEEEECCcchHHH---HHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-HHHHHhh------
Q psy18032 129 ELGKFTKL----QSTCLLGGDSMDNQ---FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FVKELGK------ 194 (333)
Q Consensus 129 ~~~~~~~~----~~~~~~g~~~~~~~---~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i~~l~~------ 194 (333)
.++...++ ++..++|+.+...+ ...+.+ ++|+|+||++|++++.+ +++++++|+ ..+.+..
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~~~~~~ 195 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKASKNVD 195 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTSTHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhccccHH
Confidence 99988888 89999999887663 344555 99999999999988765 668888884 2222111
Q ss_pred -----c----------cccceeeeecCCChHHHHH----hhhcCC-cE----EEeCCCceEEEEEecchhhh--------
Q psy18032 195 -----F----------TKLQSTCLLGGDSMDNQFA----RLHASP-DI----VVATPGRFLHIVVEMELKLS-------- 242 (333)
Q Consensus 195 -----~----------~~~~~~~l~~sAT~~~~v~----~l~~~~-~i----~~~t~~~i~~~~~~~~~k~~-------- 242 (333)
+ .+...|.+++|||++.. . .+...+ .+ ...+...+.+.+.... +..
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~~~~-k~~~L~~ll~~ 273 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAVNDE-SISTLSSILEK 273 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEESCC-CTTTTHHHHTT
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEechh-HHHHHHHHHhh
Confidence 1 13457889999998754 2 111111 11 1123445666665321 211
Q ss_pred --hHHHHhhcchhhHHHHHHHhcC-CCccccccch-HHHhhhCCCCcccccc----cc
Q psy18032 243 --SIQLSLTDFKQDTSRIALDLVG-DSTEMIHKQR-QSVRKWDPAKKKYVQV----TD 292 (333)
Q Consensus 243 --~l~lif~~~~~~~~~l~~~L~g-~~~~~lh~~r-~~l~~f~~g~~~vLva----Td 292 (333)
.-.+|||++++.|+.+++.|.. +++..+||++ +.+++|++|+++|||| ||
T Consensus 274 ~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~~~~l~~F~~G~~~VLVaTas~Td 331 (1054)
T 1gku_B 274 LGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYG 331 (1054)
T ss_dssp SCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSSSHHHHHHHHTSCSEEEEECC---
T ss_pred cCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccHHHHHHHHHcCCCcEEEEecCCCC
Confidence 1258999999999999999974 7889999954 6679999999999999 77
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-31 Score=258.19 Aligned_cols=149 Identities=15% Similarity=0.117 Sum_probs=128.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
+|+|+|.++++.+++|+|+++++|||||||++|++|+++.+...+...++++||++||++|+.|+++.++.++...++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 49999999999999999999999999999999999999998875444477899999999999999999999988889999
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc---------------------
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT--------------------- 196 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~--------------------- 196 (333)
..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+.+++++|+ |+.+.+.
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~~~~ 161 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIF--DECHNTSKNHPYNQIMFRYLDHKLGESR 161 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE--TTGGGCSTTCHHHHHHHHHHHHHTSSCC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEE--ECccccCCcchHHHHHHHHHHhhhcccc
Confidence 999999987777667777899999999999999998877 7888999884 3332221
Q ss_pred ccceeeeecCCCh
Q psy18032 197 KLQSTCLLGGDSM 209 (333)
Q Consensus 197 ~~~~~~l~~sAT~ 209 (333)
....+.+++|||.
T Consensus 162 ~~~~~~l~lSAT~ 174 (555)
T 3tbk_A 162 DPLPQVVGLTASV 174 (555)
T ss_dssp SCCCEEEEEESCC
T ss_pred CCCCeEEEEecCc
Confidence 1346899999998
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=228.39 Aligned_cols=187 Identities=30% Similarity=0.478 Sum_probs=154.3
Q ss_pred cccccCCCccccc----CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhccc
Q psy18032 30 DKKKKMGGGFQSF----GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAAT 105 (333)
Q Consensus 30 ~~~~~~~~~f~~~----~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~ 105 (333)
...+.+..+|+++ ++++++++++.++||..|+++|.++++.+++|+|++++||||||||++|++|++..+... ..
T Consensus 18 ~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~ 96 (245)
T 3dkp_A 18 TDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-AN 96 (245)
T ss_dssp SSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CS
T ss_pred CCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-cc
Confidence 3456677889987 899999999999999999999999999999999999999999999999999999988652 23
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH-HHhhCCCCEEEECchHHHHHHHhc--cccccCc
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF-ARLHASPDIVVATPGRFLHIVVEM--ELKLSSI 182 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~l~~~~~IlI~TP~rll~~l~~~--~~~~~~l 182 (333)
.++++||++||++|+.|+++.+++++...++++..+.|+....... .....+++|+|+||+++.+++... .+.++++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 176 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASV 176 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccC
Confidence 4679999999999999999999999888888888877765443332 223446899999999999999876 4678888
Q ss_pred hhhHH-------------HHHHHhhc----cccceeeeecCCChHHHHHhhh
Q psy18032 183 QYTFK-------------FVKELGKF----TKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 183 ~~lV~-------------~i~~l~~~----~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
+++|+ +.+.+..+ .+...|++++|||+++.+.++.
T Consensus 177 ~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~ 228 (245)
T 3dkp_A 177 EWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWC 228 (245)
T ss_dssp CEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHH
T ss_pred cEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHH
Confidence 88885 22333332 2346899999999998887764
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-31 Score=258.34 Aligned_cols=152 Identities=18% Similarity=0.141 Sum_probs=124.0
Q ss_pred CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTK 135 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 135 (333)
+.-.|+|+|.++++.+++|+|+++++|||||||++|++|+++.+...+...++++||++||++|+.|+++.++.++...+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 34569999999999999999999999999999999999999998875444477999999999999999999999988889
Q ss_pred ceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc------------------
Q psy18032 136 LQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT------------------ 196 (333)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~------------------ 196 (333)
+++..++|+.+...+...+..+++|+|+||+++.+++..+.+ .+.+++++|+ |+.+.+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE--ETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEE--ECCcccCCcchHHHHHHHHHHhhhc
Confidence 999999999987776667777899999999999999998877 7899999994 3322211
Q ss_pred --ccceeeeecCCCh
Q psy18032 197 --KLQSTCLLGGDSM 209 (333)
Q Consensus 197 --~~~~~~l~~sAT~ 209 (333)
....+.+++|||.
T Consensus 162 ~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 162 SASQLPQILGLTASV 176 (556)
T ss_dssp C---CCEEEEEESCC
T ss_pred ccCCCCeEEEEeCCc
Confidence 2347899999998
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-30 Score=261.33 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=126.1
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...+...++++||++||++|+.|+++.++.++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 45789999999999999999999999999999999999999999988754444779999999999999999999999888
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhcc----------------
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKFT---------------- 196 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~~---------------- 196 (333)
.++++..++|+.+...+...+..+++|+|+||+++.+.+..+.+ .+.+++++|+ |+.+.+.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi--DEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE--TTGGGCSTTSHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE--ECccccCCCccHHHHHHHHHHHh
Confidence 89999999999987777777777899999999999999998877 7888999984 3322211
Q ss_pred ----ccceeeeecCCChH
Q psy18032 197 ----KLQSTCLLGGDSMD 210 (333)
Q Consensus 197 ----~~~~~~l~~sAT~~ 210 (333)
....+.+++|||..
T Consensus 401 ~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVG 418 (797)
T ss_dssp HTTCCCCCEEEEEESCCC
T ss_pred hccCCCCCeEEEEcCCcc
Confidence 23478999999983
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=259.32 Aligned_cols=143 Identities=15% Similarity=0.171 Sum_probs=121.4
Q ss_pred HHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 52 l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
...++|+ |+++|.++++.+.+|+|++++||||||||++|.+|++..+.. +.++||++||++|++|+++.+..+.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 3456887 999999999999999999999999999999999999988755 6799999999999999999999865
Q ss_pred ccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhcccc
Q psy18032 132 KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKL 198 (333)
Q Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~ 198 (333)
. .+..++|+.+... +++|+|+||++|.+++.++...+++++++|+ ..+.+...++.
T Consensus 154 ~----~vglltGd~~~~~-------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 154 G----DVGLMTGDITINP-------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp S----CEEEECSSCEECT-------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred C----CEEEEeCCCccCC-------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 4 6777888876543 5899999999999999888778888999884 23333444566
Q ss_pred ceeeeecCCChHH
Q psy18032 199 QSTCLLGGDSMDN 211 (333)
Q Consensus 199 ~~~~l~~sAT~~~ 211 (333)
..+++++|||+++
T Consensus 223 ~~~il~LSATi~n 235 (1010)
T 2xgj_A 223 KVRYVFLSATIPN 235 (1010)
T ss_dssp TCEEEEEECCCTT
T ss_pred CCeEEEEcCCCCC
Confidence 7899999999974
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-30 Score=255.46 Aligned_cols=123 Identities=21% Similarity=0.174 Sum_probs=107.0
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|. +|+++|..++|.++.|+ ++.++||||||++|.+|++..... +++++|++||++||.|+++.+..+++++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~-----g~~vlVltPTreLA~Q~~e~~~~l~~~l 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAENNRPLFEFL 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT-----SSCCEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 575 69999999999999998 999999999999999999976544 5689999999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
|+++.+++||.+... +.+..+++|+||||++| .+++..+ .+.++.++++|+
T Consensus 143 gl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 143 GLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALV 200 (853)
T ss_dssp TCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEE
T ss_pred CCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEE
Confidence 999999999988653 34445799999999999 6877754 366788888885
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=253.42 Aligned_cols=254 Identities=15% Similarity=0.183 Sum_probs=183.0
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+.+.+.+..++| .||++|.++++.++++ +|++++||||||||++|++|++..+.. +.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 455566678999 7999999999999886 699999999999999999999998876 6799999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~ 195 (333)
+.|+++.++++....++++..++|+.+..++. ..+.+ .++|+|+||+.+.+ .+.+++++++| +|+.+.+
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVV--IDEaHr~ 502 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVI--IDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEE--EESCCCC
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEE--ecccchh
Confidence 99999999999888899999999998876543 33444 49999999987743 46788889988 4443332
Q ss_pred ----------cccceeeeecCCChHHHHHhhh--cCCcEEEe---CCCc--eEEEEEecchhh------------hhHHH
Q psy18032 196 ----------TKLQSTCLLGGDSMDNQFARLH--ASPDIVVA---TPGR--FLHIVVEMELKL------------SSIQL 246 (333)
Q Consensus 196 ----------~~~~~~~l~~sAT~~~~v~~l~--~~~~i~~~---t~~~--i~~~~~~~~~k~------------~~l~l 246 (333)
.....+++++|||..+....+. ...++.+. .+++ +...+....... ..-.+
T Consensus 503 g~~qr~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 503 GVKQREALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp -----CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred hHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEE
Confidence 1235889999999754332221 22222221 1222 222222211110 11147
Q ss_pred Hhhcch--------hhHHHHHHHhc-----CCCcccccc------chHHHhhhCCCCcccccccc--------CCccccc
Q psy18032 247 SLTDFK--------QDTSRIALDLV-----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVL 299 (333)
Q Consensus 247 if~~~~--------~~~~~l~~~L~-----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi 299 (333)
+||++. +.++.+++.|. ++++..+|| +.+.+++|++|+++|||||| +++..|+
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 889855 45677777664 568899998 34567999999999999999 4455555
Q ss_pred c--------cccEEEEccCCC
Q psy18032 300 E--------GRDVVAMARTGS 312 (333)
Q Consensus 300 ~--------~~~~~~~grtG~ 312 (333)
. ..+.||+||+|.
T Consensus 663 i~d~~r~~l~~l~Qr~GRaGR 683 (780)
T 1gm5_A 663 IENPERFGLAQLHQLRGRVGR 683 (780)
T ss_dssp BCSCSSSCTTHHHHHHHTSCC
T ss_pred EeCCCCCCHHHHHHHhcccCc
Confidence 3 324579999993
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=246.42 Aligned_cols=124 Identities=22% Similarity=0.275 Sum_probs=107.0
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.+|+ +|+++|..++|.++.|+ +++++||+|||++|.+|++..... +..++||+||++||.|..+++..++++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4699 79999999999999998 999999999999999999765444 457999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhc------cccccCchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEM------ELKLSSIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~------~~~~~~l~~lV~ 187 (333)
+|+++.+++||.+...+ ....+|+|+|+||++| .+++..+ .+.++.+.++|+
T Consensus 179 lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 179 LGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIV 237 (922)
T ss_dssp TTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEE
T ss_pred cCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEE
Confidence 99999999999876543 3344699999999999 6777654 466788888885
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=257.29 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=124.0
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQT 123 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~ 123 (333)
..+.+.....-.|+..|+|+|.++++.+++|+|+++++|||||||++|++|++..+...+...++++|||+||++|+.|+
T Consensus 233 ~~e~~~~~~~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 233 AAEGIGKPPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp ---------------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHH
T ss_pred hhhhhcCcccccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHH
Confidence 33333333334478889999999999999999999999999999999999999998875433467899999999999999
Q ss_pred HHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccc-cccCchhhHHHHHHHhhc-------
Q psy18032 124 FKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMEL-KLSSIQYTFKFVKELGKF------- 195 (333)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~-~~~~l~~lV~~i~~l~~~------- 195 (333)
++.+++++...++++..++|+.+...+...+..+++|+|+||++|.+.+..+.+ .+++++++|+ |+.+.+
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi--DEaH~~~~~~~~~ 390 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF--DECHNTTGNHPYN 390 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE--ETGGGCSTTCHHH
T ss_pred HHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEE--ECccccCCCccHH
Confidence 999999988789999999999977766666666799999999999999988777 7888999884 332211
Q ss_pred ------c-------ccceeeeecCCCh
Q psy18032 196 ------T-------KLQSTCLLGGDSM 209 (333)
Q Consensus 196 ------~-------~~~~~~l~~sAT~ 209 (333)
. ....+.+++|||.
T Consensus 391 ~i~~~~~~~~~~~~~~~~~~l~LSATp 417 (936)
T 4a2w_A 391 VLMTRYLEQKFNSASQLPQILGLTASV 417 (936)
T ss_dssp HHHHHHHHHHHTTCSCCCEEEEEESCC
T ss_pred HHHHHHHHHhhccCCCcCeEEEecCCc
Confidence 1 2347899999998
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-30 Score=258.52 Aligned_cols=128 Identities=20% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc-cCCceEEEEcccHHHHHHH-HHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAA-TSGVRALILSPTRELALQT-FKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 136 (333)
.|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..... ..++++||++|+++|+.|+ ++.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 3999999999999999999999999999999999999998876422 2346899999999999999 9999998754 58
Q ss_pred eEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH------HhccccccCchhhHH
Q psy18032 137 QSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV------VEMELKLSSIQYTFK 187 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l------~~~~~~~~~l~~lV~ 187 (333)
++..++|+....++...+..+++|+|+||++|.+.+ ....+.+..+.++|+
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvVi 142 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 142 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEE
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEE
Confidence 999999998777666666678999999999999888 455677888888884
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-28 Score=253.24 Aligned_cols=143 Identities=14% Similarity=0.180 Sum_probs=120.4
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++|+ |+++|.++|+.+++|+|++++||||||||++|++++...+.. ++++||++|+++|+.|+++.++.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~-----g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN-----MTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT-----TCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc-----CCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 45787 899999999999999999999999999999999999887654 6799999999999999999999853
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------------HHHHHhhccccce
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------------FVKELGKFTKLQS 200 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------------~i~~l~~~~~~~~ 200 (333)
.++.+..++|+.+... .++|+|+||++|.+++......++++.++|+ .+.++...++...
T Consensus 107 ~~~~v~~l~G~~~~~~-------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 107 DDVNIGLITGDVQINP-------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp --CCEEEECSSCEECT-------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred CCCeEEEEeCCCccCC-------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 3788899999876443 5899999999999999888778888998885 2333444456789
Q ss_pred eeeecCCChHH
Q psy18032 201 TCLLGGDSMDN 211 (333)
Q Consensus 201 ~~l~~sAT~~~ 211 (333)
+++++|||+++
T Consensus 180 ~iIlLSAT~~n 190 (997)
T 4a4z_A 180 KFILLSATVPN 190 (997)
T ss_dssp EEEEEECCCTT
T ss_pred CEEEEcCCCCC
Confidence 99999999863
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-28 Score=260.09 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=185.8
Q ss_pred CCHHHHHHHHhCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
|++...+++...+|+.|+|+|.++++.++. ++|++++||||||||++|.+|++..+... ++.++||++|+++||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 556677788888999999999999999976 56799999999999999999999998763 35689999999999999
Q ss_pred HHHHHHH-HhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--ccccCchhhHH------------
Q psy18032 123 TFKFVKE-LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--LKLSSIQYTFK------------ 187 (333)
Q Consensus 123 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~------------ 187 (333)
+++.+++ ++...|+++..++|+...+.. ...+++|+|+|||++..++.+.. -.+++++++|+
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~ 1064 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGP 1064 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCCCCc
Confidence 9999975 667789999999988765432 22358999999999987776532 23667777774
Q ss_pred ----HHHHHh---hccccceeeeecCCChH--HHHHhhhc--CCcEEE-e---CCCceEEEEEecch--hh---------
Q psy18032 188 ----FVKELG---KFTKLQSTCLLGGDSMD--NQFARLHA--SPDIVV-A---TPGRFLHIVVEMEL--KL--------- 241 (333)
Q Consensus 188 ----~i~~l~---~~~~~~~~~l~~sAT~~--~~v~~l~~--~~~i~~-~---t~~~i~~~~~~~~~--k~--------- 241 (333)
.+..+. ...+...|.+++|||++ +++.++.. ...+.. . .|-.+..++..... ..
T Consensus 1065 ~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1065 VLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred cHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 111121 22345789999999996 45555542 223322 2 22234444432110 00
Q ss_pred ----------hhHHHHhhcchhhHHHHHHHhc------------------------------------CCCcccccc---
Q psy18032 242 ----------SSIQLSLTDFKQDTSRIALDLV------------------------------------GDSTEMIHK--- 272 (333)
Q Consensus 242 ----------~~l~lif~~~~~~~~~l~~~L~------------------------------------g~~~~~lh~--- 272 (333)
...+++||++++.|+.++..|. ...++.+|+
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~ 1224 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLS 1224 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSC
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCC
Confidence 0115889999999998876552 112345676
Q ss_pred --chHHH-hhhCCCCcccccccc--------CCcccccc-----------------cccEEEEccCC
Q psy18032 273 --QRQSV-RKWDPAKKKYVQVTD--------DTIPLVLE-----------------GRDVVAMARTG 311 (333)
Q Consensus 273 --~r~~l-~~f~~g~~~vLvaTd--------~~i~~vi~-----------------~~~~~~~grtG 311 (333)
+|+.+ +.|++|.++|||||+ ++...||. ..|+|++||||
T Consensus 1225 ~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAG 1291 (1724)
T 4f92_B 1225 PMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHAN 1291 (1724)
T ss_dssp HHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhcccc
Confidence 45444 889999999999998 33334442 24778889988
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-27 Score=248.11 Aligned_cols=260 Identities=17% Similarity=0.126 Sum_probs=187.9
Q ss_pred ccCCCHHHHHHHH-hCCCCCCcHHHHhHHHHHhc----CC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEE
Q psy18032 41 SFGLGFEVLKGVL-KRGYKIPTPIQRKTIPLVLE----GR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALIL 113 (333)
Q Consensus 41 ~~~l~~~l~~~l~-~~g~~~~~~~Q~~~i~~i~~----g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil 113 (333)
.++.++...+.+. .++|+ |||+|.++++.+++ |+ |+++++|||+|||++|+++++..+.. +.+++|+
T Consensus 585 ~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~-----g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----HKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----TCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh-----CCeEEEE
Confidence 3566777777765 46898 79999999999987 66 99999999999999999999887654 6799999
Q ss_pred cccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH---HHhhC-CCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 114 SPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---ARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 114 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
+||++|+.|+++.+++.....++++..+.|..+..++. ..+.. .++|+|+||+.+. ..+.+++++++|+
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDE 733 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDE 733 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEES
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEec
Confidence 99999999999999988777788999888876655443 33444 4999999997652 4567888888884
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh-cC-CcEEE-eCCC--c--eEEEEEecchh--h---------hh
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH-AS-PDIVV-ATPG--R--FLHIVVEMELK--L---------SS 243 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~-~~-~~i~~-~t~~--~--i~~~~~~~~~k--~---------~~ 243 (333)
...+..+.++...+++++|||..+....+. .. .+..+ .+++ + +..++...... . ..
T Consensus 734 aH~~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~ 813 (1151)
T 2eyq_A 734 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 813 (1151)
T ss_dssp GGGSCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTC
T ss_pred hHhcChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCC
Confidence 111111223456899999999754433322 21 12222 2221 2 33333322110 0 11
Q ss_pred HHHHhhcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-----
Q psy18032 244 IQLSLTDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~----- 300 (333)
.+++||++++.++.+++.|. +.++..+|| +.+.+++|++|+++|||||+ +++..|+.
T Consensus 814 qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~ 893 (1151)
T 2eyq_A 814 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 893 (1151)
T ss_dssp EEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTS
T ss_pred eEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCC
Confidence 25889999999999998885 778999998 23567999999999999999 33445552
Q ss_pred ---cccEEEEccCC
Q psy18032 301 ---GRDVVAMARTG 311 (333)
Q Consensus 301 ---~~~~~~~grtG 311 (333)
..++||+||+|
T Consensus 894 ~~l~~l~Qr~GRvg 907 (1151)
T 2eyq_A 894 FGLAQLHQLRGRVG 907 (1151)
T ss_dssp SCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHhccC
Confidence 44789999999
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-28 Score=258.22 Aligned_cols=251 Identities=17% Similarity=0.208 Sum_probs=179.9
Q ss_pred CCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcc------cCCceEEEEcccHHHHHHHHHHHH
Q psy18032 56 GYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAA------TSGVRALILSPTRELALQTFKFVK 128 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~------~~~~~~lil~Pt~~L~~q~~~~~~ 128 (333)
||++|+++|.+++|.++. ++|++++||||||||++|.+|++..+..... ..+.++||++|+++|++|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999775 7899999999999999999999999876422 246799999999999999999999
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc--ccccCchhhHHHHHHHh-------------
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME--LKLSSIQYTFKFVKELG------------- 193 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~--~~~~~l~~lV~~i~~l~------------- 193 (333)
+.....|++|..++|+.+...+ ...+++|+|+|||++..++.+.. -.+++++++|+ |+++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIi--DEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIIL--DEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEE--TTGGGGGSTTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEE--ecchhcCCccHHHHHHH
Confidence 8888889999999998765432 12468999999999876665432 23667777773 2221
Q ss_pred --------hccccceeeeecCCChH--HHHHhhhcCC---c-EEEeC---CCceEEEEEecchh-----hh---------
Q psy18032 194 --------KFTKLQSTCLLGGDSMD--NQFARLHASP---D-IVVAT---PGRFLHIVVEMELK-----LS--------- 242 (333)
Q Consensus 194 --------~~~~~~~~~l~~sAT~~--~~v~~l~~~~---~-i~~~t---~~~i~~~~~~~~~k-----~~--------- 242 (333)
...+...|.+++|||++ +++.++.... . ..+.+ |-.+.+++.....+ ..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEK 310 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHH
Confidence 12345679999999996 4566654321 1 12222 22344444321100 00
Q ss_pred -------hHHHHhhcchhhHHHHHHHhc------C---------------------------------CCcccccc----
Q psy18032 243 -------SIQLSLTDFKQDTSRIALDLV------G---------------------------------DSTEMIHK---- 272 (333)
Q Consensus 243 -------~l~lif~~~~~~~~~l~~~L~------g---------------------------------~~~~~lh~---- 272 (333)
+.++|||++|+.|+.+++.|. + ..++..||
T Consensus 311 v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~ 390 (1724)
T 4f92_B 311 IMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTR 390 (1724)
T ss_dssp HTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCT
T ss_pred HHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCH
Confidence 115899999999999887662 0 11344566
Q ss_pred -chHHH-hhhCCCCcccccccc--------CCcccccc-----------------cccEEEEccCC
Q psy18032 273 -QRQSV-RKWDPAKKKYVQVTD--------DTIPLVLE-----------------GRDVVAMARTG 311 (333)
Q Consensus 273 -~r~~l-~~f~~g~~~vLvaTd--------~~i~~vi~-----------------~~~~~~~grtG 311 (333)
+|+.+ +.|++|.++|||||+ ++...||. ..|.|++||||
T Consensus 391 ~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAG 456 (1724)
T 4f92_B 391 VDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAG 456 (1724)
T ss_dssp HHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBS
T ss_pred HHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhcc
Confidence 44444 889999999999998 45555552 34778999999
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-29 Score=238.40 Aligned_cols=218 Identities=13% Similarity=0.117 Sum_probs=152.8
Q ss_pred CCCCCcHHHHhHHHHHhcCCcE-EEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 56 GYKIPTPIQRKTIPLVLEGRDV-VAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~i~~g~d~-l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
|+..|+|+|+ +||.+++++|+ +++||||||||++|++|++..+.. .++++||++||++|+.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7889999985 79999999987 999999999999999999987765 36799999999999999999875
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHh---------------hccccc
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELG---------------KFTKLQ 199 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~---------------~~~~~~ 199 (333)
+..+....+.... ....+..|.++||+.+.+.+... ..+++++++|+ |+.+ ...+..
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iVi--DEah~~~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVM--DEAHFTDPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEE--ETTTCCSHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEE--eCCccCCcchHHHHHHHHHhhcCCC
Confidence 2333221111111 11234679999999998777543 55778888884 2211 112347
Q ss_pred eeeeecCCChHHHHHhhhc-CCcEE-Ee--CCCceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc-
Q psy18032 200 STCLLGGDSMDNQFARLHA-SPDIV-VA--TPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK- 272 (333)
Q Consensus 200 ~~~l~~sAT~~~~v~~l~~-~~~i~-~~--t~~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~- 272 (333)
.|++++|||++..+..+.. .+.++ +. .|..........-.+...-.+|||++++.|+.+++.|. |+.+..+|+
T Consensus 142 ~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~ 221 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGFDWITDYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK 221 (451)
T ss_dssp CEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCHHHHHCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred ceEEEEccCCCccchhhhcCCCceEecCccCCchhhHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHH
Confidence 8999999999875544332 22222 21 11110000000000111236899999999999999997 889999999
Q ss_pred -chHHHhhhCCCCcccccccc
Q psy18032 273 -QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 273 -~r~~l~~f~~g~~~vLvaTd 292 (333)
+.+.+++|++|+.+||||||
T Consensus 222 ~~~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 222 TFDTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp THHHHGGGGGSSCCSEEEECG
T ss_pred HHHHHHHhhccCCceEEEECC
Confidence 34567999999999999999
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-30 Score=256.34 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=159.0
Q ss_pred HHHhCCCC-----CCcHHHH-----hHHHHHh------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc
Q psy18032 51 GVLKRGYK-----IPTPIQR-----KTIPLVL------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS 114 (333)
Q Consensus 51 ~l~~~g~~-----~~~~~Q~-----~~i~~i~------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~ 114 (333)
++..+||. .||++|+ ++||.++ +|+|++++||||||||++|++|+++.+.. .++++||++
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 45566777 8999999 9999988 89999999999999999999999998765 367999999
Q ss_pred ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhc--------cccccCchhhH
Q psy18032 115 PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEM--------ELKLSSIQYTF 186 (333)
Q Consensus 115 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~--------~~~~~~l~~lV 186 (333)
||++||.|+++.++.+ ++. ...+. .. .++||+++++++..+ ...+++++++|
T Consensus 278 PTr~La~Q~~~~l~~~----~i~--~~~~~--l~------------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvV 337 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGL----PVR--YLTPA--VQ------------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFV 337 (673)
T ss_dssp SSHHHHHHHHHHTTTS----CCE--ECCC-----------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEE
T ss_pred cHHHHHHHHHHHHhcC----Cee--eeccc--cc------------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEE
Confidence 9999999999988753 222 10000 00 145555443322222 13577888888
Q ss_pred H------------HHHHHhhccc-cceeeeecCCChHHHHHhhhcC-CcEE-EeC--C-CceEEEEEecchhhhhHHHHh
Q psy18032 187 K------------FVKELGKFTK-LQSTCLLGGDSMDNQFARLHAS-PDIV-VAT--P-GRFLHIVVEMELKLSSIQLSL 248 (333)
Q Consensus 187 ~------------~i~~l~~~~~-~~~~~l~~sAT~~~~v~~l~~~-~~i~-~~t--~-~~i~~~~~~~~~k~~~l~lif 248 (333)
+ .+..+....+ ...|++++|||++..+..+... ..+. +.. + ..+.+.+.. -.+...-.+||
T Consensus 338 iDEaH~~~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~~~~i~~v~~~~~~~~~~~~l~~-l~~~~~~~lVF 416 (673)
T 2wv9_A 338 MDEAHFTDPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDTNSPVHDVSSEIPDRAWSSGFEW-ITDYAGKTVWF 416 (673)
T ss_dssp EESTTCCCHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSCCHH-HHSCCSCEEEE
T ss_pred EeCCcccCccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhcccCCceEEEeeecCHHHHHHHHHH-HHhCCCCEEEE
Confidence 4 1111222222 5789999999998776655432 1221 110 0 111110000 00112236899
Q ss_pred hcchhhHHHHHHHhc--CCCcccccc-c-hHHHhhhCCCCcccccccc-----CC--cccccc-----------------
Q psy18032 249 TDFKQDTSRIALDLV--GDSTEMIHK-Q-RQSVRKWDPAKKKYVQVTD-----DT--IPLVLE----------------- 300 (333)
Q Consensus 249 ~~~~~~~~~l~~~L~--g~~~~~lh~-~-r~~l~~f~~g~~~vLvaTd-----~~--i~~vi~----------------- 300 (333)
|+++++++.+++.|. ++++..+|| + .+.+++|++|+++|||||| -+ +..||+
T Consensus 417 ~~s~~~~e~la~~L~~~g~~v~~lHg~eR~~v~~~F~~g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~ 496 (673)
T 2wv9_A 417 VASVKMSNEIAQCLQRAGKRVIQLNRKSYDTEYPKCKNGDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRV 496 (673)
T ss_dssp CSSHHHHHHHHHHHHTTTCCEEEECSSSHHHHGGGGGTCCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEE
T ss_pred ECCHHHHHHHHHHHHhCCCeEEEeChHHHHHHHHHHHCCCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccc
Confidence 999999999999997 889999999 3 3567999999999999999 22 555554
Q ss_pred ----------cccEEEEccCC
Q psy18032 301 ----------GRDVVAMARTG 311 (333)
Q Consensus 301 ----------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 497 ~ll~d~P~s~~~y~Qr~GRaG 517 (673)
T 2wv9_A 497 ILSVPSAITSASAAQRRGRVG 517 (673)
T ss_dssp EECCSEECCHHHHHHHHTTSS
T ss_pred eecccCCCCHHHHHHHhhccC
Confidence 45999999999
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-29 Score=248.58 Aligned_cols=237 Identities=12% Similarity=0.070 Sum_probs=158.2
Q ss_pred cccc-cCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 38 GFQS-FGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 38 ~f~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.|.. +++++.+.+++.+. ...|+|+|+.+++.+++|+|++++||||||||++|++|+++.+.. .++++||++||
T Consensus 150 ~~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Pt 224 (618)
T 2whx_A 150 YGNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPT 224 (618)
T ss_dssp CCC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESS
T ss_pred cccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcCh
Confidence 4455 67888777766654 588999999999999999999999999999999999999999876 36799999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--------- 187 (333)
++||.|+++.++. ..+. ..+.. .. .....+..+.++|.+.+...+... ..+++++++|+
T Consensus 225 reLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~~~~ 292 (618)
T 2whx_A 225 RVVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFTDPC 292 (618)
T ss_dssp HHHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCCSHH
T ss_pred HHHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCCCcc
Confidence 9999999988763 2232 11111 00 001113456677777776554433 45778888885
Q ss_pred H---HHHHhhccc-cceeeeecCCChHHHHHhhhc-CCcEEEe-C--CC-ceEEEEEecchhhhhHHHHhhcchhhHHHH
Q psy18032 188 F---VKELGKFTK-LQSTCLLGGDSMDNQFARLHA-SPDIVVA-T--PG-RFLHIVVEMELKLSSIQLSLTDFKQDTSRI 258 (333)
Q Consensus 188 ~---i~~l~~~~~-~~~~~l~~sAT~~~~v~~l~~-~~~i~~~-t--~~-~i~~~~~~~~~k~~~l~lif~~~~~~~~~l 258 (333)
+ +..+...++ ...|++++|||++..+..+.. .+.++.. . |. .....+ ..-.+...-.+|||++++.|+.+
T Consensus 293 ~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll-~~l~~~~~~~LVF~~s~~~a~~l 371 (618)
T 2whx_A 293 SVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQSNSPIEDIEREIPERSWNTGF-DWITDYQGKTVWFVPSIKAGNDI 371 (618)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSC-HHHHHCCSCEEEECSSHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccEEEEECCCchhhhhhhccCCceeeecccCCHHHHHHHH-HHHHhCCCCEEEEECChhHHHHH
Confidence 2 222333333 578999999999877655543 2322221 1 11 110000 00001112368999999999999
Q ss_pred HHHhc--CCCcccccc-ch-HHHhhhCCCCcccccccc
Q psy18032 259 ALDLV--GDSTEMIHK-QR-QSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 259 ~~~L~--g~~~~~lh~-~r-~~l~~f~~g~~~vLvaTd 292 (333)
++.|. ++++..+|| +| +.+++|++|+.+||||||
T Consensus 372 ~~~L~~~g~~v~~lhg~~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 372 ANCLRKSGKRVIQLSRKTFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp HHHHHHTTCCEEEECTTTHHHHTTHHHHSCCSEEEECG
T ss_pred HHHHHHcCCcEEEEChHHHHHHHHhhcCCCcEEEEECc
Confidence 99997 889999999 33 566999999999999999
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-28 Score=236.90 Aligned_cols=233 Identities=14% Similarity=0.115 Sum_probs=160.4
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEE
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQST 139 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~ 139 (333)
+.+.|.++++.+.+++|++++||||||||++|.+|+++. +.++||++|||+||.|+++.+.+. .+..+.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~---~g~~vg 286 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKA---HGIDPN 286 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHH---HSCCCE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHH---hCCCee
Confidence 445566666666688999999999999999999998862 568999999999999999877653 355667
Q ss_pred EEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------H---HHHHhhcccccee--eeec
Q psy18032 140 CLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------F---VKELGKFTKLQST--CLLG 205 (333)
Q Consensus 140 ~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~---i~~l~~~~~~~~~--~l~~ 205 (333)
..+|+.. +..+++|+|+||++| +....+.+++++++|+ + +..+.+.++...+ .+++
T Consensus 287 ~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~ 356 (666)
T 3o8b_A 287 IRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLA 356 (666)
T ss_dssp EECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEE
T ss_pred EEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEE
Confidence 7777755 345799999999997 4566778888888885 3 2233344444444 6667
Q ss_pred CCChHHHHHhhhcCCcEEE--eCCCceEEEEEec---chhhhhHHHHhhcchhhHHHHHHHhc--CCCccccccchHHHh
Q psy18032 206 GDSMDNQFARLHASPDIVV--ATPGRFLHIVVEM---ELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHKQRQSVR 278 (333)
Q Consensus 206 sAT~~~~v~~l~~~~~i~~--~t~~~i~~~~~~~---~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~~r~~l~ 278 (333)
|||++..+.. ..+.+.. ........++... ......-.+|||+++++++++++.|. |+++..+||+... +
T Consensus 357 SAT~~~~i~~--~~p~i~~v~~~~~~~i~~~~~~~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q-~ 433 (666)
T 3o8b_A 357 TATPPGSVTV--PHPNIEEVALSNTGEIPFYGKAIPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDV-S 433 (666)
T ss_dssp ESSCTTCCCC--CCTTEEEEECBSCSSEEETTEEECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCG-G
T ss_pred CCCCCccccc--CCcceEEEeecccchhHHHHhhhhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCH-H
Confidence 9999874331 2222211 1111112221111 01111236899999999999999996 8899999994322 2
Q ss_pred hhCCCCcccccccc-------CCcccccc----------------------------cccEEEEccCCCchhh
Q psy18032 279 KWDPAKKKYVQVTD-------DTIPLVLE----------------------------GRDVVAMARTGSGKTA 316 (333)
Q Consensus 279 ~f~~g~~~vLvaTd-------~~i~~vi~----------------------------~~~~~~~grtG~g~~~ 316 (333)
+|.+++.+|||||| .+++.||+ ..|+||+||||.|+..
T Consensus 434 er~~~~~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGRg~~G 506 (666)
T 3o8b_A 434 VIPTIGDVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRG 506 (666)
T ss_dssp GSCSSSCEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCSSSCE
T ss_pred HHHhCCCcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCCCCCC
Confidence 35666679999999 34666662 2499999999954443
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-28 Score=233.12 Aligned_cols=216 Identities=16% Similarity=0.149 Sum_probs=141.7
Q ss_pred HHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHH
Q psy18032 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN 149 (333)
Q Consensus 70 ~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~ 149 (333)
.+++|+|++++||||||||++|++|+++.+.. .+++++|++||++||.|+++.++.+ + +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~----~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~---- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF---- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh----cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc----
Confidence 36789999999999999999999999998765 3679999999999999999988743 2 22111110
Q ss_pred HHHHhhCCCCEEEECchHHHHHHHhcc--------ccccCchhhHHHHHHHhhc--------------c-ccceeeeecC
Q psy18032 150 QFARLHASPDIVVATPGRFLHIVVEME--------LKLSSIQYTFKFVKELGKF--------------T-KLQSTCLLGG 206 (333)
Q Consensus 150 ~~~~l~~~~~IlI~TP~rll~~l~~~~--------~~~~~l~~lV~~i~~l~~~--------------~-~~~~~~l~~s 206 (333)
-.++||+++++++..+. ..+++++++|+ |+.+.+ . +...|++++|
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vVi--DEah~~~~~~~~~~~~~~~~~~~~~~~~l~~S 137 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIM--DEAHFLDPASIAARGWAAHRARANESATILMT 137 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEE--TTTTCCSHHHHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ----------eeccCCccceeeecccchhHhhhCcccccCccEEEE--ECccccCcchHHHHHHHHHHhccCCceEEEEe
Confidence 03788887765444333 23788888884 332221 2 2568999999
Q ss_pred CChHHHHHhhhcCC-cEEEeC---C-CceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHH
Q psy18032 207 DSMDNQFARLHASP-DIVVAT---P-GRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSV 277 (333)
Q Consensus 207 AT~~~~v~~l~~~~-~i~~~t---~-~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l 277 (333)
||+++.+..+.... .+.... + ....+.+. .-.+...-.+|||++++.++.+++.|. |+++..+|| +++.+
T Consensus 138 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~ 216 (440)
T 1yks_A 138 ATPPGTSDEFPHSNGEIEDVQTDIPSEPWNTGHD-WILADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREY 216 (440)
T ss_dssp SSCTTCCCSSCCCSSCEEEEECCCCSSCCSSSCH-HHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC---
T ss_pred CCCCchhhhhhhcCCCeeEeeeccChHHHHHHHH-HHHhcCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHH
Confidence 99987765554321 111110 0 00000000 000111236899999999999999997 889999999 44677
Q ss_pred hhhCCCCcccccccc-----CC--cccccc--------------------------cccEEEEccCCC
Q psy18032 278 RKWDPAKKKYVQVTD-----DT--IPLVLE--------------------------GRDVVAMARTGS 312 (333)
Q Consensus 278 ~~f~~g~~~vLvaTd-----~~--i~~vi~--------------------------~~~~~~~grtG~ 312 (333)
++|++|+++|||||| -+ +..||+ ..|+||+||+|.
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR 284 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGR 284 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSC
T ss_pred hhhcCCCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCC
Confidence 999999999999999 23 445542 358999999994
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-25 Score=224.44 Aligned_cols=274 Identities=17% Similarity=0.140 Sum_probs=183.6
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc-CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE-GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~-g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.+..+|+++++++.+.+.+.+.+ ..|+++|+++|+.++. +++++++||||||||. ++|++..........+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEe
Confidence 34568999999999999999988 7899999999999776 5679999999999998 566663222111122568999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCc-chHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGD-SMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
++|+++|+.|+++.+... .+..+...+|.. .... ....+++|+++||+++...+... ..+.+++++|+
T Consensus 146 l~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~---~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN---KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE---ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHH---hCCchhheecceecccc---ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 999999999999877653 233222222211 1100 11236899999999999877653 34666777764
Q ss_pred -----------HHHHHhhccccceeeeecCCChH-HHHHhhhcCCcEEEe--CCCceEEEEEecch--hh----------
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMD-NQFARLHASPDIVVA--TPGRFLHIVVEMEL--KL---------- 241 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~-~~v~~l~~~~~i~~~--t~~~i~~~~~~~~~--k~---------- 241 (333)
++.++.... ...+++++|||++ +.+..+.....++.. ..-.+..++..... ..
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~ 297 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQI 297 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHH
Confidence 222222211 3578999999986 444555444433332 11234444432211 11
Q ss_pred -----hhHHHHhhcchhhHHHHHHHhc-------------CCCcccccc------chHHHhhhC-----CCCcccccccc
Q psy18032 242 -----SSIQLSLTDFKQDTSRIALDLV-------------GDSTEMIHK------QRQSVRKWD-----PAKKKYVQVTD 292 (333)
Q Consensus 242 -----~~l~lif~~~~~~~~~l~~~L~-------------g~~~~~lh~------~r~~l~~f~-----~g~~~vLvaTd 292 (333)
..-.+|||+++++++.+++.|. ++.+..+|| +++.++.|. +|+.+||||||
T Consensus 298 ~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~ 377 (773)
T 2xau_A 298 HATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN 377 (773)
T ss_dssp HHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT
T ss_pred HHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc
Confidence 1114899999999999997763 567889998 334569999 99999999999
Q ss_pred --------CCcccccc-------------------------cccEEEEccCC---CchhhHH
Q psy18032 293 --------DTIPLVLE-------------------------GRDVVAMARTG---SGKTACF 318 (333)
Q Consensus 293 --------~~i~~vi~-------------------------~~~~~~~grtG---~g~~~~~ 318 (333)
+++..||+ ..|+||+||+| .|+...+
T Consensus 378 iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l 439 (773)
T 2xau_A 378 IAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRL 439 (773)
T ss_dssp HHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEES
T ss_pred HHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEE
Confidence 55556665 23689999999 4654433
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-26 Score=223.36 Aligned_cols=242 Identities=14% Similarity=0.023 Sum_probs=170.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+|+|.++++.+++++|+++++|||+|||++|+.++...+.. .++++|||+|+++|+.|+++.+++++...++.+
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH----CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC----CCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 6999999999999999999999999999999999999888764 234999999999999999999999877777888
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCCCh
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGDSM 209 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sAT~ 209 (333)
..+.|+.+..++ +..+++|+|+||+.+... ....++++.++|+ ....+.+.++...+.+++|||.
T Consensus 189 ~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 189 KKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp EECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEEEEESCG
T ss_pred EEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCcccHHHHHHhcccCcEEEEEEeCC
Confidence 989888776654 455799999999976532 3355677777774 2222333344567889999999
Q ss_pred HHHHHhh-----hcCCcEEEeCC-----------CceEEEEEecc-----------------------hhhhhH------
Q psy18032 210 DNQFARL-----HASPDIVVATP-----------GRFLHIVVEME-----------------------LKLSSI------ 244 (333)
Q Consensus 210 ~~~v~~l-----~~~~~i~~~t~-----------~~i~~~~~~~~-----------------------~k~~~l------ 244 (333)
++....+ ..++.+...++ ..+........ .+...+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 342 (510)
T 2oca_A 263 RDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIK 342 (510)
T ss_dssp GGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHH
Confidence 6542110 11221111111 11111111100 000001
Q ss_pred --------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCccccccc-c--------CCccccc
Q psy18032 245 --------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVT-D--------DTIPLVL 299 (333)
Q Consensus 245 --------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaT-d--------~~i~~vi 299 (333)
.++|++ .+.++.+++.|. +.++..+|| +| +.+++|++|+.+||||| + +++..|+
T Consensus 343 ~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi 421 (510)
T 2oca_A 343 LAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVV 421 (510)
T ss_dssp HHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEE
T ss_pred HHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEE
Confidence 245555 888999999997 458999998 23 45699999999999999 6 3344444
Q ss_pred c-------cccEEEEccCC
Q psy18032 300 E-------GRDVVAMARTG 311 (333)
Q Consensus 300 ~-------~~~~~~~grtG 311 (333)
. ..++|++||+|
T Consensus 422 ~~~~~~s~~~~~Q~~GR~g 440 (510)
T 2oca_A 422 LAHGVKSKIIVLQTIGRVL 440 (510)
T ss_dssp ESSCCCSCCHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHhccc
Confidence 2 45889888777
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.2e-25 Score=208.85 Aligned_cols=144 Identities=20% Similarity=0.207 Sum_probs=118.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+|+|.++++.++.+ ++++.+|||+|||++++++++..+.. .+.++||++|+++|+.|+.+.++++....+.++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 4999999999999999 99999999999999999999988762 356899999999999999999999765455688
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc---------------ccceeee
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT---------------KLQSTCL 203 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~---------------~~~~~~l 203 (333)
..+.|+....+.. ....+++|+|+||+.+...+..+.+.+.++.++|+ |+.+.+. ....+.+
T Consensus 84 ~~~~g~~~~~~~~-~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIi--DEaH~~~~~~~~~~~~~~~~~~~~~~~~l 160 (494)
T 1wp9_A 84 VALTGEKSPEERS-KAWARAKVIVATPQTIENDLLAGRISLEDVSLIVF--DEAHRAVGNYAYVFIAREYKRQAKNPLVI 160 (494)
T ss_dssp EEECSCSCHHHHH-HHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEE--ETGGGCSTTCHHHHHHHHHHHHCSSCCEE
T ss_pred EEeeCCcchhhhh-hhccCCCEEEecHHHHHHHHhcCCcchhhceEEEE--ECCcccCCCCcHHHHHHHHHhcCCCCeEE
Confidence 8889888776543 33446899999999999999888888888888883 4333222 2356789
Q ss_pred ecCCChH
Q psy18032 204 LGGDSMD 210 (333)
Q Consensus 204 ~~sAT~~ 210 (333)
++|||..
T Consensus 161 ~lTaTp~ 167 (494)
T 1wp9_A 161 GLTASPG 167 (494)
T ss_dssp EEESCSC
T ss_pred EEecCCC
Confidence 9999985
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-26 Score=221.76 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=149.9
Q ss_pred HHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchH
Q psy18032 69 PLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD 148 (333)
Q Consensus 69 ~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (333)
..+.+++|++++||||||||++|++|+++.+.. .++++||++||++|+.|+++.++ +..+....+.....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC
Confidence 346678999999999999999999999998765 36799999999999999999887 23222211111110
Q ss_pred HHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhh--------------c-cccceeeeecCCChHHHH
Q psy18032 149 NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGK--------------F-TKLQSTCLLGGDSMDNQF 213 (333)
Q Consensus 149 ~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~--------------~-~~~~~~~l~~sAT~~~~v 213 (333)
-..+..+.++|.+.+...+... ..+++++++|+ |+... . .....|++++|||++..+
T Consensus 86 -----~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iVi--DEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~ 157 (459)
T 2z83_A 86 -----HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVM--DEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTT 157 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEE--SSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCC
T ss_pred -----CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEE--ECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcch
Confidence 1123456778888777655443 45777888884 22221 1 124689999999999776
Q ss_pred Hhhhc--CCcEEEe--CCCceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHHhhhCCCCc
Q psy18032 214 ARLHA--SPDIVVA--TPGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSVRKWDPAKK 285 (333)
Q Consensus 214 ~~l~~--~~~i~~~--t~~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l~~f~~g~~ 285 (333)
..+.. .|...+. .+..........-.+...-.+|||++++.++.+++.|. |+++..+|+ +++.+++|++|+.
T Consensus 158 ~~~~~~~~pi~~~~~~~~~~~~~~~~~~l~~~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~~R~~~~~~f~~g~~ 237 (459)
T 2z83_A 158 DPFPDSNAPIHDLQDEIPDRAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRKSYDTEYPKCKNGDW 237 (459)
T ss_dssp CSSCCCSSCEEEEECCCCSSCCSSCCHHHHHCCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTTCCCCCGGGSSSCCC
T ss_pred hhhccCCCCeEEecccCCcchhHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHHHHHHHHhhccCCCc
Confidence 55532 2222221 11110000000000112236899999999999999997 899999999 3456799999999
Q ss_pred ccccccc-----CCc--ccccc---------------------------cccEEEEccCC
Q psy18032 286 KYVQVTD-----DTI--PLVLE---------------------------GRDVVAMARTG 311 (333)
Q Consensus 286 ~vLvaTd-----~~i--~~vi~---------------------------~~~~~~~grtG 311 (333)
+|||||| -++ ..||+ ..|+||+||+|
T Consensus 238 ~iLVaT~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaG 297 (459)
T 2z83_A 238 DFVITTDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVG 297 (459)
T ss_dssp SEEEESSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSS
T ss_pred eEEEECChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccC
Confidence 9999999 233 45554 44999999999
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-25 Score=212.75 Aligned_cols=222 Identities=14% Similarity=0.125 Sum_probs=148.9
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+|+|++++||||||||++|++|+++.+.. .+++++|++||++|+.|+++.++ ++.+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 47899999999999999999999977654 36799999999999999988775 4455544443221
Q ss_pred HhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhcc-ccceeeeecCCChHHHHHhhhc-
Q psy18032 153 RLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFT-KLQSTCLLGGDSMDNQFARLHA- 218 (333)
Q Consensus 153 ~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~~- 218 (333)
.-..+..+.+.|.+.+...+.. ...+++++++|+ ....+.... +...+++++|||+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~ 144 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS 144 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC
T ss_pred cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC
Confidence 1112345667888888766655 556788888885 111222221 3478999999999876655542
Q ss_pred -CCcEEEeC--C-CceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc--chHHHhhhCCCCcccccc
Q psy18032 219 -SPDIVVAT--P-GRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSVRKWDPAKKKYVQV 290 (333)
Q Consensus 219 -~~~i~~~t--~-~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l~~f~~g~~~vLva 290 (333)
.+.+.+.. + ......+... .+...-.+|||+++++++.+++.|. ++++..+|| +.+.+++|++|+++||||
T Consensus 145 ~~~i~~~~~~~~~~~~~~~~~~l-~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~~r~~~~~~f~~g~~~vLVa 223 (431)
T 2v6i_A 145 NSPIIDEETRIPDKAWNSGYEWI-TEFDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVIT 223 (431)
T ss_dssp SSCCEEEECCCCSSCCSSCCHHH-HSCSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEE
T ss_pred CCceeeccccCCHHHHHHHHHHH-HcCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCccHHHHHHhhcCCCCeEEEE
Confidence 22222211 1 1110000000 0011236899999999999999997 889999999 335669999999999999
Q ss_pred cc-----CCcc--cc-----------------cc-------cccEEEEccCC
Q psy18032 291 TD-----DTIP--LV-----------------LE-------GRDVVAMARTG 311 (333)
Q Consensus 291 Td-----~~i~--~v-----------------i~-------~~~~~~~grtG 311 (333)
|| -++| .| ++ ..|+||+||+|
T Consensus 224 T~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~G 275 (431)
T 2v6i_A 224 TDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIG 275 (431)
T ss_dssp CGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSS
T ss_pred CchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccC
Confidence 99 3444 22 22 45999999999
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-24 Score=202.63 Aligned_cols=224 Identities=16% Similarity=0.096 Sum_probs=153.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce-
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ- 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~- 137 (333)
.|+|+|.++++.++++.++++++|||+|||++|+.++... +.++||++|+++|+.|+++.++.+ ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 5899999999999999999999999999999999998764 458999999999999999999883 677
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhccc----------cceeeeecCC
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFTK----------LQSTCLLGGD 207 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~~----------~~~~~l~~sA 207 (333)
+..+.|+... .++|+|+||+.+......- .+++.++| +|+...+.. ...+.+++||
T Consensus 161 v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liI--vDEaH~~~~~~~~~~~~~~~~~~~l~lSA 226 (472)
T 2fwr_A 161 VGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLI--FDEVHHLPAESYVQIAQMSIAPFRLGLTA 226 (472)
T ss_dssp EEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEE--EETGGGTTSTTTHHHHHTCCCSEEEEEES
T ss_pred eEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEE--EECCcCCCChHHHHHHHhcCCCeEEEEec
Confidence 7777776642 4789999999987665421 13466666 333332221 2467788999
Q ss_pred ChHH-------------------HHHhhhc----CCc---EEEeCC----------------------------CceEEE
Q psy18032 208 SMDN-------------------QFARLHA----SPD---IVVATP----------------------------GRFLHI 233 (333)
Q Consensus 208 T~~~-------------------~v~~l~~----~~~---i~~~t~----------------------------~~i~~~ 233 (333)
|..+ ....+.. ++. +.+..+ ..+.++
T Consensus 227 Tp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (472)
T 2fwr_A 227 TFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKI 306 (472)
T ss_dssp CCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTT
T ss_pred CccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHH
Confidence 9852 1111111 111 111000 000000
Q ss_pred E-----------------------Eecchhhhh-----------HHHHhhcchhhHHHHHHHhcCCCcccccc-----ch
Q psy18032 234 V-----------------------VEMELKLSS-----------IQLSLTDFKQDTSRIALDLVGDSTEMIHK-----QR 274 (333)
Q Consensus 234 ~-----------------------~~~~~k~~~-----------l~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r 274 (333)
+ .....|... -.+|||++++.++.+++.|. +..+|| +|
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~---~~~~~g~~~~~~R 383 (472)
T 2fwr_A 307 VMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL---IPAITHRTSREER 383 (472)
T ss_dssp TTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---CCBCCSSSCSHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---cceeeCCCCHHHH
Confidence 0 000011111 14889999999999998884 556777 23
Q ss_pred -HHHhhhCCCCcccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 275 -QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 275 -~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+.+++|++|+++|||||+ +++..|+. ..|+|++||+|
T Consensus 384 ~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~ 436 (472)
T 2fwr_A 384 EEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRIL 436 (472)
T ss_dssp HTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSB
T ss_pred HHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhcc
Confidence 456999999999999998 44555553 45889888888
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-21 Score=191.46 Aligned_cols=214 Identities=14% Similarity=0.073 Sum_probs=133.8
Q ss_pred HHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEE
Q psy18032 63 IQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLL 142 (333)
Q Consensus 63 ~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~ 142 (333)
.|.......++|+|++++||||||||+ +++..+.. ...++|++||++||.|+++.++.+ |+.+..++
T Consensus 144 ~~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~-----~~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~llt 210 (677)
T 3rc3_A 144 PNWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFS-----AKSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVT 210 (677)
T ss_dssp GGGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHH-----SSSEEEEESSHHHHHHHHHHHHHT----TCCEEEEC
T ss_pred hhhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHh-----cCCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEE
Confidence 344444556789999999999999998 44455444 234699999999999999999873 78888999
Q ss_pred CCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------HHHHHhhccccceeeeecCCChHHHHHhh
Q psy18032 143 GGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------FVKELGKFTKLQSTCLLGGDSMDNQFARL 216 (333)
Q Consensus 143 g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l 216 (333)
|+...-. ..-....+++++|++.+.....-+.+-+++...+.. ....+..+.....+++++|||.+ .+..+
T Consensus 211 G~~~~iv--~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l 287 (677)
T 3rc3_A 211 GEERVTV--QPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMEL 287 (677)
T ss_dssp SSCEECC--STTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHH
T ss_pred CCeeEEe--cCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHH
Confidence 8876511 000113678999986543110001222333332211 12223333336788999999964 33333
Q ss_pred h--cCCcEEEeCCCceEEEEEec-----chhhhhHHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhC
Q psy18032 217 H--ASPDIVVATPGRFLHIVVEM-----ELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWD 281 (333)
Q Consensus 217 ~--~~~~i~~~t~~~i~~~~~~~-----~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~ 281 (333)
. .+..+.+....+........ -.+...-.++||+++++++.+++.|. ++.+..+|| +++.++.|+
T Consensus 288 ~~~~~~~~~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~ 367 (677)
T 3rc3_A 288 MYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFN 367 (677)
T ss_dssp HHHHTCCEEEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHH
T ss_pred HHhcCCceEEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHH
Confidence 2 12233332222211111110 01111223789999999999999997 889999998 235669999
Q ss_pred C--CCcccccccc
Q psy18032 282 P--AKKKYVQVTD 292 (333)
Q Consensus 282 ~--g~~~vLvaTd 292 (333)
+ |+++||||||
T Consensus 368 ~~~g~~~VLVATd 380 (677)
T 3rc3_A 368 DPNDPCKILVATD 380 (677)
T ss_dssp CTTSSCCEEEECG
T ss_pred ccCCCeEEEEeCc
Confidence 8 9999999998
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-21 Score=191.07 Aligned_cols=250 Identities=12% Similarity=0.071 Sum_probs=140.7
Q ss_pred CCcHHHHhHHHHHhc----C-CcEEEECCCCcHHHHHHHHHHHHHhhhh----cccCCceEEEEcccHHHHHHHH-HHHH
Q psy18032 59 IPTPIQRKTIPLVLE----G-RDVVAMARTGSGKTACFLIPMLEKLKTH----AATSGVRALILSPTRELALQTF-KFVK 128 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g-~d~l~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~~lil~Pt~~L~~q~~-~~~~ 128 (333)
.|+++|.++++.+++ | +++++++|||||||++++..+...+... ....++++|||+|+++|+.|++ +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 599999999999886 4 5699999999999999655444333321 0114679999999999999998 7777
Q ss_pred HHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHH----hccccccCchhhHHHHHHH-----------h
Q psy18032 129 ELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVV----EMELKLSSIQYTFKFVKEL-----------G 193 (333)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~----~~~~~~~~l~~lV~~i~~l-----------~ 193 (333)
.++ ..+..+.++. ...+.+|+|+||++|..... ...+....+.++|+ |+. .
T Consensus 258 ~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIi--DEaH~~~~~~~~~~~ 323 (590)
T 3h1t_A 258 PFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIII--DECHRGSARDNSNWR 323 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEE--SCCC---------CH
T ss_pred hcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEE--ECCccccccchHHHH
Confidence 643 3333333221 23468999999999988764 23345566777774 221 1
Q ss_pred hccc--cceeeeecCCChH----HHHHhhhcCC------------------cEEEe-CCCc-----------------eE
Q psy18032 194 KFTK--LQSTCLLGGDSMD----NQFARLHASP------------------DIVVA-TPGR-----------------FL 231 (333)
Q Consensus 194 ~~~~--~~~~~l~~sAT~~----~~v~~l~~~~------------------~i~~~-t~~~-----------------i~ 231 (333)
.++. ...+.+++|||.. .....+...+ .+... +... +.
T Consensus 324 ~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 324 EILEYFEPAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHHSTTSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHHhCCcceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 1111 1367899999954 1222221111 11110 0000 00
Q ss_pred EEEEec-c--------hh-------h---------hhHHHHhhcchhhHHHHHHHhc--CC--------Ccccccc---c
Q psy18032 232 HIVVEM-E--------LK-------L---------SSIQLSLTDFKQDTSRIALDLV--GD--------STEMIHK---Q 273 (333)
Q Consensus 232 ~~~~~~-~--------~k-------~---------~~l~lif~~~~~~~~~l~~~L~--g~--------~~~~lh~---~ 273 (333)
...... . .+ + ..-++|||++++.|+.+++.|. +. .+..+|| +
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 000000 0 00 0 0115899999999999998885 21 2567887 2
Q ss_pred -h-HHHhhhCCCCcc---cccccc--------CCcccccc-------cccEEEEccCCC-----chhhHHHhhh
Q psy18032 274 -R-QSVRKWDPAKKK---YVQVTD--------DTIPLVLE-------GRDVVAMARTGS-----GKTACFLFYF 322 (333)
Q Consensus 274 -r-~~l~~f~~g~~~---vLvaTd--------~~i~~vi~-------~~~~~~~grtG~-----g~~~~~~lp~ 322 (333)
| +.+++|++|+.+ |||+|| +++..|+. ..|+|++||+|. ||...+++-+
T Consensus 484 ~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~ 557 (590)
T 3h1t_A 484 IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNIIDY 557 (590)
T ss_dssp HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEEEec
Confidence 3 456999998876 788887 33444543 448899999993 6776665543
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-20 Score=157.81 Aligned_cols=132 Identities=21% Similarity=0.223 Sum_probs=104.8
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHH-HHHHHHHHhc
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQ-TFKFVKELGK 132 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q-~~~~~~~~~~ 132 (333)
.+...|+++|.++++.+++++++++++|||+|||++|+++++..+.... ...+.++||++|+++|+.| ..+.++.+..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 3445699999999999999999999999999999999999998876532 1235689999999999999 6778888765
Q ss_pred cCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhcc------ccccCchhhHH
Q psy18032 133 FTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEME------LKLSSIQYTFK 187 (333)
Q Consensus 133 ~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~------~~~~~l~~lV~ 187 (333)
. ++++..+.|+.........+..+++|+|+||+++...+.... +.+.++.++|+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIi 168 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIII 168 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEE
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEE
Confidence 4 788888888876655555555579999999999998887643 56777888883
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=7.4e-19 Score=173.99 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=107.8
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|| +|+++|..++|.++.|+ +++++||+|||++|.+|++..... |.+++|++||++||.|.++.+..++++
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----G~qv~VvTPTreLA~Qdae~m~~l~~~ 146 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----GKGVHVVTVNDYLARRDAEWMGPVYRG 146 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----CSCCEEEESSHHHHHHHHHHHHHHHHT
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 3799 79999999999999998 999999999999999999655443 558999999999999999999999999
Q ss_pred CCceEEEEECCcchHHHHHHhhCCCCEEEECchHH-HHHHHhcc------cccc---CchhhHH
Q psy18032 134 TKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRF-LHIVVEME------LKLS---SIQYTFK 187 (333)
Q Consensus 134 ~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rl-l~~l~~~~------~~~~---~l~~lV~ 187 (333)
+|+++.+++||.+... +....+++|+|+||+++ .+++..+. +.++ .++++|+
T Consensus 147 lGLsv~~i~Gg~~~~~--r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lII 208 (997)
T 2ipc_A 147 LGLSVGVIQHASTPAE--RRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAII 208 (997)
T ss_dssp TTCCEEECCTTCCHHH--HHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEE
T ss_pred cCCeEEEEeCCCCHHH--HHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEE
Confidence 9999999999988544 33344799999999999 78887763 5677 8999883
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=149.24 Aligned_cols=161 Identities=14% Similarity=0.134 Sum_probs=112.8
Q ss_pred CHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHH
Q psy18032 45 GFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTF 124 (333)
Q Consensus 45 ~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~ 124 (333)
++.+.+.+...+.-.++++|.++++.+.+|++++++||||||||.++.++++..........+.++++++|+++|+.|+.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 44444444443334479999999999999999999999999999999999998776543333568999999999999998
Q ss_pred HHHHHHh-ccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----------HH-HH
Q psy18032 125 KFVKELG-KFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-----------FV-KE 191 (333)
Q Consensus 125 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-----------~i-~~ 191 (333)
+.+.... ...+..+......... ....+++|+|+||+++++++.. .+++++++|+ +. ..
T Consensus 127 ~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~ 198 (235)
T 3llm_A 127 ERVAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVV 198 (235)
T ss_dssp HHHHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHH
T ss_pred HHHHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHH
Confidence 8887632 2334444332222111 1123588999999999999876 3677777774 11 12
Q ss_pred Hhhccc--cceeeeecCCChHHHH
Q psy18032 192 LGKFTK--LQSTCLLGGDSMDNQF 213 (333)
Q Consensus 192 l~~~~~--~~~~~l~~sAT~~~~v 213 (333)
+..+.. ...|++++|||++...
T Consensus 199 l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 199 LRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHhhCCCCeEEEEecCCCHHH
Confidence 222222 3578999999997543
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=164.84 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=74.5
Q ss_pred hCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 54 KRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 54 ~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
-+|+. |+++|.-..-.+..|+ ++.+.||+|||+++.+|++-.... |..+.|++|+..||.+-.+++..+..+
T Consensus 71 ~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----G~~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 71 TLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----GKGVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp HTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----CCceEEEeccHHHHHhHHHHHHHHHHH
Confidence 35777 8999999999999887 999999999999999999866555 667999999999999999999999999
Q ss_pred CCceEEEEEC
Q psy18032 134 TKLQSTCLLG 143 (333)
Q Consensus 134 ~~~~~~~~~g 143 (333)
+|+++.+++.
T Consensus 143 Lglsvg~i~~ 152 (822)
T 3jux_A 143 LGLRVGVINS 152 (822)
T ss_dssp TTCCEEEEET
T ss_pred hCCEEEEEcC
Confidence 9999999997
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-19 Score=181.84 Aligned_cols=155 Identities=15% Similarity=0.049 Sum_probs=109.4
Q ss_pred HHHHHHHHhCC-------CCCCcHHHHhHHHHHhc--------------CCcEEEECCCCcHHHHHHHHHHHHHhhhhcc
Q psy18032 46 FEVLKGVLKRG-------YKIPTPIQRKTIPLVLE--------------GRDVVAMARTGSGKTACFLIPMLEKLKTHAA 104 (333)
Q Consensus 46 ~~l~~~l~~~g-------~~~~~~~Q~~~i~~i~~--------------g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~ 104 (333)
+.+++.+..+- ...|+|+|.+|++.++. +++.+++++||||||+++ ++++..+.. .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~--~ 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATE--L 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTT--C
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHh--c
Confidence 45566665542 23499999999999876 368999999999999997 666655443 1
Q ss_pred cCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhcc--ccccC
Q psy18032 105 TSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEME--LKLSS 181 (333)
Q Consensus 105 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~~--~~~~~ 181 (333)
....++|||+|+++|+.|..+.++.++.. .+.++.+.......+. .+++|+|+||+++..++.... ..++.
T Consensus 328 ~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~ 401 (1038)
T 2w00_A 328 DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQ 401 (1038)
T ss_dssp TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGS
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhcccc
Confidence 22469999999999999999999987542 1234555555555564 468999999999998876542 23445
Q ss_pred chhhHH----------HHHHHhhccccceeeeecCCChH
Q psy18032 182 IQYTFK----------FVKELGKFTKLQSTCLLGGDSMD 210 (333)
Q Consensus 182 l~~lV~----------~i~~l~~~~~~~~~~l~~sAT~~ 210 (333)
..++|+ +...+...++ ..+.++||||..
T Consensus 402 ~~lvIiDEAHrs~~~~~~~~I~~~~p-~a~~lgfTATP~ 439 (1038)
T 2w00_A 402 QVVFIFDECHRSQFGEAQKNLKKKFK-RYYQFGFTGTPI 439 (1038)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHHHCS-SEEEEEEESSCC
T ss_pred ccEEEEEccchhcchHHHHHHHHhCC-cccEEEEeCCcc
Confidence 555553 2334444443 468899999975
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=148.81 Aligned_cols=143 Identities=16% Similarity=0.080 Sum_probs=110.0
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+++|.++++.++++.+.++++|||+|||++++.++...+.. .+.++||++|+++|+.|+.+.+++++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 6999999999999998899999999999999999888877654 234899999999999999999999877667788
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------HHHHHhhccccceeeeecCCCh
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---------FVKELGKFTKLQSTCLLGGDSM 209 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---------~i~~l~~~~~~~~~~l~~sAT~ 209 (333)
..+.|+..... ....+++|+|+||+.+... ....+++++++|+ .+..+...+....+.+++|||.
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSL 262 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEEECSSC
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEEEeCCC
Confidence 88888765433 2234689999999877543 2234566677773 1222223333468889999998
Q ss_pred HH
Q psy18032 210 DN 211 (333)
Q Consensus 210 ~~ 211 (333)
++
T Consensus 263 ~~ 264 (282)
T 1rif_A 263 RD 264 (282)
T ss_dssp CT
T ss_pred CC
Confidence 64
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-18 Score=176.27 Aligned_cols=144 Identities=15% Similarity=0.042 Sum_probs=93.9
Q ss_pred CCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 59 IPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
.|+|+|.+++..++.. .+++++++||+|||+.++..+...+... ...++|||+|+ .|+.|..+.+.+. .++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~---f~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRR---FNL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHH---SCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHH---hCC
Confidence 5899999999998874 4799999999999999988877766552 23479999999 9999999988764 366
Q ss_pred eEEEEECCcchHHHHH--HhhCCCCEEEECchHHHHHHHh-ccccccCchhhHH---------------HHHHHhhcccc
Q psy18032 137 QSTCLLGGDSMDNQFA--RLHASPDIVVATPGRFLHIVVE-MELKLSSIQYTFK---------------FVKELGKFTKL 198 (333)
Q Consensus 137 ~~~~~~g~~~~~~~~~--~l~~~~~IlI~TP~rll~~l~~-~~~~~~~l~~lV~---------------~i~~l~~~~~~ 198 (333)
.+..+.|+........ ......+|+|+|++.+...... ..+...++.++|+ ....+..+...
T Consensus 226 ~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~ 305 (968)
T 3dmq_A 226 RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEH 305 (968)
T ss_dssp CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTT
T ss_pred CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhc
Confidence 6665554432221111 1122579999999887532111 1123344555553 11122222223
Q ss_pred ceeeeecCCCh
Q psy18032 199 QSTCLLGGDSM 209 (333)
Q Consensus 199 ~~~~l~~sAT~ 209 (333)
....+++|||.
T Consensus 306 ~~~~L~LTATP 316 (968)
T 3dmq_A 306 VPGVLLLTATP 316 (968)
T ss_dssp CSSEEESCSSC
T ss_pred CCcEEEEEcCC
Confidence 44578888885
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=147.32 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=76.3
Q ss_pred CCcHHHHhHHHHH----hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLV----LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i----~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|+|+|.++++.+ ..++++++..+||+|||+.++..+...... ....++|||+| ..|+.|..+.++++..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~---~~~~~~LIv~P-~~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---NELTPSLVICP-LSVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---TCCSSEEEEEC-STTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCCCCEEEEcc-HHHHHHHHHHHHHHCC--
Confidence 5999999999876 457899999999999999876544443322 22457999999 4688999999998753
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l 172 (333)
+.++..+.|+... .....++|+|+||+.+....
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~ 143 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDT 143 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCH
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccc
Confidence 5666666665522 12235899999999987543
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-14 Score=126.27 Aligned_cols=104 Identities=19% Similarity=0.084 Sum_probs=83.7
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce-
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ- 137 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~- 137 (333)
.|+++|.++++.+++++++++++|||+|||.+++.++... +.+++|++|+++|+.|..+.+.++ ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 5899999999999999999999999999999998887653 457999999999999999988873 677
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
+..+.|+.. ...+|+|+||+.+....... ...+.++|
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llI 197 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLI 197 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEE
Confidence 777766653 25789999999987655421 13355566
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.50 E-value=5.2e-14 Score=137.24 Aligned_cols=131 Identities=18% Similarity=0.083 Sum_probs=98.4
Q ss_pred CCCCCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 56 GYKIPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 56 g~~~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|| .|+|.|.+++.. +..|+|++++||||+|||++|++|++.. +++++|++||++|+.|+.+.++.+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 46 489999997775 4578999999999999999999999982 5689999999999999999999987
Q ss_pred ccCCceEEEEECCcch---------------------------------HHHH------------------HHhhCCCCE
Q psy18032 132 KFTKLQSTCLLGGDSM---------------------------------DNQF------------------ARLHASPDI 160 (333)
Q Consensus 132 ~~~~~~~~~~~g~~~~---------------------------------~~~~------------------~~l~~~~~I 160 (333)
+..++++..+.|+.+. .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888887774321 1111 223346899
Q ss_pred EEECchHHHHHHHhccccc-cCchhhHHHHHHHhhccc
Q psy18032 161 VVATPGRFLHIVVEMELKL-SSIQYTFKFVKELGKFTK 197 (333)
Q Consensus 161 lI~TP~rll~~l~~~~~~~-~~l~~lV~~i~~l~~~~~ 197 (333)
||+|+.+|++...+..+.+ .....+| +|+-+++..
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vI--iDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIV--IDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEE--ETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEE--EecccchHH
Confidence 9999999997765544332 3445555 455444443
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-13 Score=134.95 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=59.7
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||++++.++.+++.|. |+++..+|| +.+.+++|++|+++|||||| +++..|++
T Consensus 442 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 442 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCC
Confidence 5899999999999999997 889999998 23566999999999999998 33444543
Q ss_pred ----cccEEEEccCC---CchhhHHH
Q psy18032 301 ----GRDVVAMARTG---SGKTACFL 319 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~ 319 (333)
..|+||+||+| .|+++.|+
T Consensus 522 p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 522 LRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp GGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred CCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 25899999999 45555444
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-12 Score=130.69 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=81.0
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.++|+|.+++..++ .+.+.++..++|+|||+.++..+...+... .....+|||+| ..|+.|..+.+.+++ .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~--~~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFAR--RQNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH--SCCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc--CCCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 57899999998666 789999999999999998776665544332 12446899999 678888999898875 4
Q ss_pred CceEEEEECCcchHHHHHHh------------hCCCCEEEECchHHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARL------------HASPDIVVATPGRFLHI 171 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l------------~~~~~IlI~TP~rll~~ 171 (333)
++.+....|+.......... ...++|+|+|++.+...
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~ 359 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD 359 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh
Confidence 67777777776655443321 22578999999998754
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.5e-13 Score=128.27 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=58.7
Q ss_pred CCCCCCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 55 RGYKIPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
.|| .|+|+|.+++.. +..|++++++||||+|||++|++|++.. +++++|++||++|+.|+.+.++.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 478 699999998654 5678999999999999999999998764 568999999999999999888763
Q ss_pred hccCCceEEEEEC
Q psy18032 131 GKFTKLQSTCLLG 143 (333)
Q Consensus 131 ~~~~~~~~~~~~g 143 (333)
++++..+.|
T Consensus 75 ----~~~~~~l~g 83 (540)
T 2vl7_A 75 ----GLKTGFLIG 83 (540)
T ss_dssp ----TCCEEEC--
T ss_pred ----CCcEEEecC
Confidence 455555444
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.4e-12 Score=124.14 Aligned_cols=124 Identities=15% Similarity=0.211 Sum_probs=84.1
Q ss_pred CCcHHHHhHHHHHh---------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcc--cCCceEEEEcccHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVL---------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAA--TSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~---------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.++|+|.+++..+. .+.+.|+..++|+|||+.++..+...+...+. +...++|||+|+ .|+.|..+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 58999999999874 45679999999999999887776665544221 123469999997 7888999999
Q ss_pred HHHhccCCceEEEEECCcchHHH--HHHh-hC-----CCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 128 KELGKFTKLQSTCLLGGDSMDNQ--FARL-HA-----SPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~--~~~l-~~-----~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
.++... .+.+..+.||...... .... .. ..+|+|+|++.+..... .+......++|
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI 197 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVI 197 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEE
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEE
Confidence 987644 5667777776543221 1111 11 37899999998875432 22233444555
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-12 Score=130.42 Aligned_cols=77 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
++|||+++..++.+++.|. |+++..+|| +.+.+++|++|+++|||||| +++..|++
T Consensus 448 vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 448 VLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccC
Confidence 5899999999999999997 889999998 23566999999999999998 33344443
Q ss_pred ----cccEEEEccCC---CchhhHHHhh
Q psy18032 301 ----GRDVVAMARTG---SGKTACFLFY 321 (333)
Q Consensus 301 ----~~~~~~~grtG---~g~~~~~~lp 321 (333)
..|+||+|||| .|++..|+-+
T Consensus 528 p~s~~~~iQr~GRagR~~~G~~i~~~~~ 555 (661)
T 2d7d_A 528 LRSERSLIQTIGRAARNAEGRVIMYADK 555 (661)
T ss_dssp TTSHHHHHHHHHTTTTSTTCEEEEECSS
T ss_pred CCCHHHHHHHhCcccCCCCCEEEEEEeC
Confidence 34899999999 5666655543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.7e-11 Score=120.78 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=73.2
Q ss_pred CCcHHHHhHHHH----HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPL----VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~----i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
+|+|.|.+.+.. +.+|+|++++||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+.++.+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~----~~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE----RKLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH----HTCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh----cCCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 389999998864 5679999999999999999999999998865 25689999999999999999999998877
Q ss_pred CceEEEEECCcc
Q psy18032 135 KLQSTCLLGGDS 146 (333)
Q Consensus 135 ~~~~~~~~g~~~ 146 (333)
+++++.+.|+.+
T Consensus 79 ~~~~~~l~gr~~ 90 (620)
T 4a15_A 79 KIRAIPMQGRVN 90 (620)
T ss_dssp CCCEEECCCHHH
T ss_pred CeEEEEEECCCc
Confidence 899998888765
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-11 Score=99.89 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=68.3
Q ss_pred CCCceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAK 284 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~ 284 (333)
++..+.|++... +.|...+ .+|||++++.++.++..|. |+++..+|| +.+.+++|++|+
T Consensus 2 ~~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp ---CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred ccCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 556677777654 2343332 5899999999999999996 899999998 234669999999
Q ss_pred cccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 285 KKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 285 ~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
.++||||| +++..|++ ..|+||+||+| .|.+..|+
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999998 34455554 44999999998 34444444
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-11 Score=96.29 Aligned_cols=94 Identities=26% Similarity=0.414 Sum_probs=70.5
Q ss_pred CCCceEEEEEec--chhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAK 284 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~ 284 (333)
++.++.|.+... +.|...+ .+|||++++.++.+++.|. |+.+..+|| +.+.+++|++|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 85 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE 85 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC
Confidence 455677777654 3344333 4899999999999999996 899999998 234569999999
Q ss_pred cccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 285 KKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 285 ~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
+++||||| +++..|++ ..|+||+||+| .|+...|+
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999998 44555664 45899999998 34444444
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-10 Score=96.13 Aligned_cols=86 Identities=14% Similarity=0.332 Sum_probs=65.2
Q ss_pred CCCceEEEEEecch---hhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCC
Q psy18032 226 TPGRFLHIVVEMEL---KLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPA 283 (333)
Q Consensus 226 t~~~i~~~~~~~~~---k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g 283 (333)
++.++.|++...+. |...+ .+|||++++.++.++..|. |+.+..+|| +.+.+++|++|
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g 83 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG 83 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 56678888776532 43333 5899999999999999997 889999998 23556999999
Q ss_pred Ccccccccc--------CCcccccc-------------cccEEEEccCC
Q psy18032 284 KKKYVQVTD--------DTIPLVLE-------------GRDVVAMARTG 311 (333)
Q Consensus 284 ~~~vLvaTd--------~~i~~vi~-------------~~~~~~~grtG 311 (333)
+.++||||| +++..|++ ..|+||+||+|
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~g 132 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTG 132 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC-
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccc
Confidence 999999998 33444442 24889999998
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-10 Score=97.80 Aligned_cols=95 Identities=24% Similarity=0.321 Sum_probs=69.8
Q ss_pred CCCceEEEEEec--chhhhhH----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCc
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKK 285 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~ 285 (333)
++.++.|.+... +.|...+ .+|||++++.++.++..|. |+++..+|| +.+.+++|++|++
T Consensus 26 ~~~~i~q~~~~~~~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~ 105 (191)
T 2p6n_A 26 ASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKK 105 (191)
T ss_dssp --CCSEEEEEECCGGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSC
T ss_pred CCcCceEEEEEcChHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Confidence 345677766543 3343333 5899999999999999996 999999998 2345699999999
Q ss_pred ccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 286 KYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 286 ~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
+|||||| ++++.|++ ..|+||+||+| .|.+..|+.
T Consensus 106 ~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 106 DVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp SEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEEC
T ss_pred EEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEc
Confidence 9999998 45555664 44999999999 344544443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-10 Score=95.46 Aligned_cols=86 Identities=21% Similarity=0.255 Sum_probs=65.8
Q ss_pred CCCceEEEEEec--chhhhhH------------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCC
Q psy18032 226 TPGRFLHIVVEM--ELKLSSI------------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPA 283 (333)
Q Consensus 226 t~~~i~~~~~~~--~~k~~~l------------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g 283 (333)
++.++.|.+... ..|...+ .+|||++++.++.++..|. |+.+..+|| +.+.+++|++|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 566787777654 2333322 5899999999999999996 899999998 33567999999
Q ss_pred Ccccccccc--------CCcccccc-------cccEEEEccCC
Q psy18032 284 KKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG 311 (333)
Q Consensus 284 ~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG 311 (333)
+++|||||| +++..|++ ..|+||+||+|
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~ 138 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTG 138 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBC
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccC
Confidence 999999998 45555554 45899999998
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.5e-10 Score=92.95 Aligned_cols=68 Identities=12% Similarity=0.195 Sum_probs=57.2
Q ss_pred HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------
Q psy18032 244 IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE------- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~------- 300 (333)
-.+|||++++.++.+++.|. |+.+..+|| +.+.+++|++|+.++||||| +++..|++
T Consensus 32 ~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~ 111 (170)
T 2yjt_D 32 RSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSG 111 (170)
Confidence 46899999999999999997 889999998 23566999999999999998 34555554
Q ss_pred cccEEEEccCC
Q psy18032 301 GRDVVAMARTG 311 (333)
Q Consensus 301 ~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 112 ~~~~qr~GR~~ 122 (170)
T 2yjt_D 112 DTYLHRIGRTA 122 (170)
Confidence 45999999998
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-10 Score=92.10 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=56.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.++||||| +++..|++ .
T Consensus 33 ~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~ 112 (165)
T 1fuk_A 33 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 112 (165)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGG
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHH
Confidence 4899999999999999997 889999998 23456999999999999998 34555554 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 113 ~~~qr~GR~g 122 (165)
T 1fuk_A 113 NYIHRIGRGG 122 (165)
T ss_dssp GGGGSSCSCC
T ss_pred HHHHHhcccc
Confidence 5999999999
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.7e-10 Score=97.12 Aligned_cols=67 Identities=22% Similarity=0.354 Sum_probs=57.3
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.+|||||| +++..|++ .
T Consensus 34 ~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~ 113 (212)
T 3eaq_A 34 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAE 113 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEESSCCSSHH
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEECCCCcCHH
Confidence 5899999999999999996 999999998 33456999999999999998 45666665 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 114 ~~~qr~GR~g 123 (212)
T 3eaq_A 114 AYQHRSGRTG 123 (212)
T ss_dssp HHHHHHTTBC
T ss_pred HHHHHhcccC
Confidence 5899999998
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=7.2e-10 Score=99.38 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=57.4
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.++.++..|. |+.+..+|| +.+.++.|++|+.+|||||| +++..||+ .
T Consensus 31 ~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~ 110 (300)
T 3i32_A 31 AMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAE 110 (300)
T ss_dssp EEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEESSCCSSTT
T ss_pred EEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEEcCCCCCHH
Confidence 5899999999999999995 889999998 33456999999999999999 55666665 5
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||||
T Consensus 111 ~y~Qr~GRag 120 (300)
T 3i32_A 111 AYQHRSGRTG 120 (300)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHccCcC
Confidence 5899999999
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.8e-07 Score=90.61 Aligned_cols=73 Identities=21% Similarity=0.198 Sum_probs=61.5
Q ss_pred cHHHHhHHHHHhcCCcEEEECCCCcHHH--HHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCc
Q psy18032 61 TPIQRKTIPLVLEGRDVVAMARTGSGKT--ACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKL 136 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d~l~~a~TGsGKT--~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 136 (333)
++.|..+++.++.+++++++|++||||| ++++++.+..+.. ..+.++++++||...|.++.+.+...+...++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l 225 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGKALRQLPL 225 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSC
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999 7788888876532 23568999999999999999888876555443
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00016 Score=71.51 Aligned_cols=66 Identities=17% Similarity=0.283 Sum_probs=53.9
Q ss_pred CCcHHHHhHHHHHhcCCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+++-|.+|+..++..++ .+++||+|||||....-.+.+.+.. +.++|+++||..=+.++.+.+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~-----~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ-----GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC-----CCeEEEEcCchHHHHHHHHHHHh
Confidence 468899999999988776 7999999999997655444444433 56899999999999999888876
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.41 E-value=4.6e-05 Score=67.04 Aligned_cols=71 Identities=17% Similarity=0.134 Sum_probs=45.9
Q ss_pred HHHhhcchhhHHHHHHHhc---CCCcccccc-----ch-HHHhhhCCC-Ccc-cccccc--------CCcccccc-----
Q psy18032 245 QLSLTDFKQDTSRIALDLV---GDSTEMIHK-----QR-QSVRKWDPA-KKK-YVQVTD--------DTIPLVLE----- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~---g~~~~~lh~-----~r-~~l~~f~~g-~~~-vLvaTd--------~~i~~vi~----- 300 (333)
++||++++..++.+...|. |+++..+|| +| +.+++|+++ +.+ +|++|+ ...+.||+
T Consensus 115 vlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~w 194 (271)
T 1z5z_A 115 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWW 194 (271)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCS
T ss_pred EEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCC
Confidence 4789999999999999884 899999998 34 456999998 787 688887 34444553
Q ss_pred --cccEEEEccCC-Cchh
Q psy18032 301 --GRDVVAMARTG-SGKT 315 (333)
Q Consensus 301 --~~~~~~~grtG-~g~~ 315 (333)
..|.|++||++ -|.+
T Consensus 195 np~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 195 NPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp CTTTC-------------
T ss_pred ChhHHHHHHHhccccCCC
Confidence 55999999998 3433
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.001 Score=65.42 Aligned_cols=69 Identities=16% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
..+++.|.+++..++.+.-.+++||+|||||....- ++..+.. ..+.++++++||..-+.++.+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~---~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLAR---QGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHT---SSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHH---cCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 357899999999998877799999999999976543 3333332 13568999999999999998888753
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0012 Score=66.68 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=54.2
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
..+++.|.+++..++.+.-++++||+|||||....--+ ..+... .+.++++++||..-+.++.+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45689999999999887779999999999997654333 333221 2458999999999999999988874
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0018 Score=61.20 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred HhCCCCCCcHHHHhHHHHHhcC----C-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 53 LKRGYKIPTPIQRKTIPLVLEG----R-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 53 ~~~g~~~~~~~Q~~~i~~i~~g----~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.-+.|..+++-|.+++..++.. . .+++.|+.|||||... ..++..+... ....+++++||..-+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHHHhhh
Confidence 4467889999999999987643 3 8999999999999544 3444444431 1236999999999888776544
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0028 Score=64.01 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=53.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+++.|.+++..++.+.-.+++||+|||||.... .++..+... .+.++++++||..-+.++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4689999999999887779999999999997544 333333321 356899999999999999888775
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0035 Score=60.94 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=49.5
Q ss_pred CcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKF 126 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~ 126 (333)
+++.|.+++..++.+..+++.||+|||||... ..++..+.. .+.++++++||...+..+.+.
T Consensus 190 L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 190 LSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHhh
Confidence 79999999999999999999999999999643 233333333 366899999999999887653
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.003 Score=62.14 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=55.3
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+.... ....+.|++++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 5689999999973 3567999999999999877655555554321 123479999999999999999998864
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0052 Score=60.93 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=55.2
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....+.|+++.|+..+.++.+.+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999975 3568999999999999877665555554421 1234799999999999999999988643
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0096 Score=63.12 Aligned_cols=69 Identities=28% Similarity=0.293 Sum_probs=56.1
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-ccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA-ATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+|+-|.++|..- +.+++|.|..|||||.+.+--++..+.... +-...+.+++++|++.+.++.+.+..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 3899999999754 789999999999999887776776666532 11234899999999999999998887
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.015 Score=58.16 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=55.5
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ....+.|+++.|+..|.++.+.+..+.
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5689999999875 3568999999999999877666665555321 123479999999999999999988763
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0044 Score=55.07 Aligned_cols=37 Identities=30% Similarity=0.635 Sum_probs=29.5
Q ss_pred ccccccc--ccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 295 IPLVLEG--RDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 295 i~~vi~~--~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
+|.++++ .++.-++.||+|||.+|++|+++++.....
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~ 161 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC
Confidence 3444443 678889999999999999999999976543
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=95.39 E-value=0.061 Score=52.40 Aligned_cols=71 Identities=15% Similarity=0.084 Sum_probs=56.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
.|+|+|...+..+-..+-+++..+-|+|||.+...-++..+... .+..+++++|+.+.|.++++.++.+.+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 37999999998875567799999999999987765555554442 255899999999999999998887654
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.066 Score=49.14 Aligned_cols=72 Identities=15% Similarity=0.089 Sum_probs=57.4
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhcc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKF 133 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 133 (333)
.++|+|...+..+...+-+++..+-+.|||.+....++..+.. ..+..+++++|+++-|..+++.++.+.+.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 4899999999877555679999999999998776666554433 23568999999999999999888877543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.059 Score=43.46 Aligned_cols=62 Identities=19% Similarity=0.354 Sum_probs=34.4
Q ss_pred cHHHHhHHHHHh---------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 61 TPIQRKTIPLVL---------EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 61 ~~~Q~~~i~~i~---------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
++.|.+++..+. .|+.+++.||+|+|||.... .+...+... .+..+ +..+..++..+....+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~-~i~~~~~~~---~g~~~-~~~~~~~~~~~~~~~~ 86 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV-ATLKAIYEK---KGIRG-YFFDTKDLIFRLKHLM 86 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH-HHHHHHHHH---SCCCC-CEEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH-HHHHHHHHH---cCCeE-EEEEHHHHHHHHHHHh
Confidence 345555555443 37889999999999996443 233333211 23233 3345556655554433
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.22 Score=40.73 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.++.. ++.+..++|+.+..++...+. ...+|||+| +....+ +++.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G-ldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG-LDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT-CCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC-CCcccC
Confidence 457999999999999999988873 788999999987766554442 258999999 444443 566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 124 ~~VI 127 (191)
T 2p6n_A 124 QHVI 127 (191)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6665
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.022 Score=47.88 Aligned_cols=33 Identities=39% Similarity=0.787 Sum_probs=26.4
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 52 ~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 52 PIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 444455677888999999999999999988753
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=93.78 E-value=0.02 Score=48.79 Aligned_cols=34 Identities=38% Similarity=0.644 Sum_probs=28.5
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 60 i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 60 WPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp HHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 4555566788888999999999999999998764
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.025 Score=48.19 Aligned_cols=33 Identities=39% Similarity=0.720 Sum_probs=26.8
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 61 ~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 93 (245)
T 3dkp_A 61 PVMLHGRELLASAPTGSGKTLAFSIPILMQLKQ 93 (245)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCS
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhh
Confidence 444455577788999999999999999998864
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.022 Score=53.21 Aligned_cols=35 Identities=46% Similarity=0.748 Sum_probs=29.3
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.+|.++++.++.-++.||+|||++|++|+++++..
T Consensus 86 ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 86 SIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 34556667788999999999999999999998754
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.036 Score=45.65 Aligned_cols=33 Identities=39% Similarity=0.794 Sum_probs=26.9
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 35 ~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~ 67 (206)
T 1vec_A 35 PIALSGRDILARAKNGTGKSGAYLIPLLERLDL 67 (206)
T ss_dssp HHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCT
T ss_pred HHHccCCCEEEECCCCCchHHHHHHHHHHHhcc
Confidence 334445577888999999999999999998865
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.53 E-value=0.016 Score=50.14 Aligned_cols=34 Identities=47% Similarity=0.597 Sum_probs=27.6
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-++.||+|||.+|++|+++.+.+
T Consensus 85 i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~ 118 (262)
T 3ly5_A 85 IRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVK 118 (262)
T ss_dssp HHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHh
Confidence 3445556677788999999999999999998764
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.52 E-value=0.032 Score=52.04 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=39.6
Q ss_pred ccccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.++..+|++.+--++..+.|.+. .+..|.-++...++ -.+.+|+.||+|+|||+.+
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 3456778999999888888887653 23334333332221 2478999999999999744
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.039 Score=46.56 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=27.1
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 56 ~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~ 88 (230)
T 2oxc_A 56 PLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVL 88 (230)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 344555677888999999999999999998864
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=93.40 E-value=0.041 Score=46.02 Aligned_cols=34 Identities=38% Similarity=0.594 Sum_probs=27.5
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
+.+.++.++.-.+.||+|||.+|++|+++++...
T Consensus 46 ~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~ 79 (224)
T 1qde_A 46 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS 79 (224)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT
T ss_pred HHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc
Confidence 3444556778889999999999999999988653
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.033 Score=46.58 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=27.7
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 35 i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~ 68 (219)
T 1q0u_A 35 IPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKP 68 (219)
T ss_dssp HHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 3444555677788999999999999999999865
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.029 Score=47.45 Aligned_cols=34 Identities=47% Similarity=0.674 Sum_probs=28.1
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++.+.+
T Consensus 56 i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~ 89 (236)
T 2pl3_A 56 IGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYR 89 (236)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHh
Confidence 4555566678889999999999999999998743
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.08 E-value=0.035 Score=47.64 Aligned_cols=34 Identities=44% Similarity=0.752 Sum_probs=27.5
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-.+.||+|||.+|++|+++++..
T Consensus 74 i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~ 107 (249)
T 3ber_A 74 IPLALQGRDIIGLAETGSGKTGAFALPILNALLE 107 (249)
T ss_dssp HHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhc
Confidence 3444555677888999999999999999998754
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.034 Score=47.59 Aligned_cols=35 Identities=49% Similarity=0.682 Sum_probs=28.8
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
.++.++++.++.-++.||+|||.+|++|+++++..
T Consensus 53 ~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~ 87 (253)
T 1wrb_A 53 AIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVC 87 (253)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 34555666788889999999999999999998754
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.035 Score=47.10 Aligned_cols=33 Identities=33% Similarity=0.539 Sum_probs=26.7
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-.+.||+|||.+|++|+++++..
T Consensus 62 ~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~ 94 (237)
T 3bor_A 62 IPCIKGYDVIAQAQSGTGKTATFAISILQQLEI 94 (237)
T ss_dssp HHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 334445567788999999999999999999864
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.80 E-value=0.5 Score=37.72 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=51.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++..+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+|. .+.. .+++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~~-Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCAR-GIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCCT-TTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chhc-CCCcccC
Confidence 45899999999999999888876 4788999999988766654442 2 589999993 3322 3455555
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 104 ~~Vi 107 (175)
T 2rb4_A 104 TIVV 107 (175)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 5555
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.49 Score=37.32 Aligned_cols=70 Identities=16% Similarity=0.230 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-----DVAAR-GIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTT-TCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-----Chhhc-CCchhcC
Confidence 45799999999999999998887 4788999999987766544432 2 47899999 33333 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 105 ~~Vi 108 (163)
T 2hjv_A 105 SLVI 108 (163)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.068 Score=50.33 Aligned_cols=29 Identities=28% Similarity=0.627 Sum_probs=25.6
Q ss_pred ccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 302 RDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 302 ~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
.++.-.|.||+|||.+|++|+++++....
T Consensus 132 ~~~l~~a~TGsGKT~~~~l~il~~l~~~~ 160 (479)
T 3fmp_B 132 QNLIAQSQSGTGKTAAFVLAMLSQVEPAN 160 (479)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHTTCCTTS
T ss_pred CcEEEEcCCCCchhHHHHHHHHHHHhhcC
Confidence 57778999999999999999999987654
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.97 E-value=0.66 Score=36.60 Aligned_cols=70 Identities=11% Similarity=0.223 Sum_probs=51.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+.+.++. .++.+..++|+.+..++...+. + ..+|||+| +.+.. .+++.++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEc-----Chhhc-CCCcccC
Confidence 45899999999999999998887 4778899999987766544432 2 48999999 33333 3456666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 100 ~~Vi 103 (165)
T 1fuk_A 100 SLVI 103 (165)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.067 Score=43.97 Aligned_cols=33 Identities=45% Similarity=0.727 Sum_probs=26.5
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++.+..
T Consensus 33 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~ 65 (207)
T 2gxq_A 33 PLALEGKDLIGQARTGTGKTLAFALPIAERLAP 65 (207)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHcCCCCEEEECCCCChHHHHHHHHHHHHHhh
Confidence 334445577788999999999999999998853
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.73 E-value=0.83 Score=36.41 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=51.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+.. .++.+..++|+.+..++...+. + ..+|||+|. .+.. .+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~-Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFGR-GMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCST-TCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----chhc-CcchhhC
Confidence 45899999999999999998887 4788999999987766544432 2 589999994 2222 3556666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 101 ~~Vi 104 (172)
T 1t5i_A 101 NIAF 104 (172)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6655
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.64 E-value=0.68 Score=42.21 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=53.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++. .++.+..++|+.+..++...+. ...+|||+| +.+..+ +++.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~G-idip~v 345 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVAT-----AVAARG-LDISNV 345 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----HHHHTT-SCCCCE
T ss_pred CCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEEC-----ChhhcC-CCcccC
Confidence 56899999999999999998887 4788999999988766554442 258999999 555544 566667
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 346 ~~Vi 349 (417)
T 2i4i_A 346 KHVI 349 (417)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6666
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.62 E-value=0.095 Score=43.61 Aligned_cols=33 Identities=33% Similarity=0.586 Sum_probs=26.8
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.++++.++.-.+.||+|||.+|++|+++.+..
T Consensus 46 ~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~ 78 (220)
T 1t6n_A 46 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP 78 (220)
T ss_dssp HHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHhCCCCEEEECCCCCchhhhhhHHHHHhhhc
Confidence 444455567788899999999999999998765
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.58 E-value=0.15 Score=39.59 Aligned_cols=21 Identities=14% Similarity=0.079 Sum_probs=17.6
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999997554
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.13 Score=39.90 Aligned_cols=20 Identities=15% Similarity=0.069 Sum_probs=16.8
Q ss_pred HhcCCcEEEECCCCcHHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~ 90 (333)
...+.++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 44567899999999999964
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.20 E-value=0.067 Score=49.26 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=36.7
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++.|=-++..+.|++. .+..|--++..-+ .-.+.+|+.||+|+|||+.+-
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHHHH
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHHHH
Confidence 35667999998777777777653 1223322222211 124789999999999997443
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.2 Score=46.75 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=32.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.++.|+.|+|||.... +.+.. ...+|++||++++.++.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~----~~~~~------~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEIL----SRVNF------EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHH----HHCCT------TTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHH----HHhcc------CCeEEEeCCHHHHHHHHHHhhh
Confidence 7899999999997443 22211 2469999999999998887754
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.096 Score=45.51 Aligned_cols=58 Identities=10% Similarity=0.141 Sum_probs=35.9
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH--HhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL--VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~--i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|+++.-.+...+.+.+.= ..|. ...+.+.. +..++.+++.||+|+|||...-
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVV-ELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHT-HHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHHH
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHH-HHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 355678999988888877776531 1010 01112222 2345789999999999996443
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=90.54 E-value=1.3 Score=42.37 Aligned_cols=75 Identities=16% Similarity=0.234 Sum_probs=57.0
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.++++.-+..+++.++.... .++.+..++|+.+..++...+. ...+|||+| +.+.. .+++.+
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT-----~~~~~-GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEc-----chhhc-CCCccc
Confidence 356899999999999999999987532 3788899999988766554443 358999999 34443 477888
Q ss_pred chhhHH
Q psy18032 182 IQYTFK 187 (333)
Q Consensus 182 l~~lV~ 187 (333)
+.++|.
T Consensus 411 v~~VI~ 416 (563)
T 3i5x_A 411 VHEVLQ 416 (563)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=90.52 E-value=0.81 Score=37.88 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=53.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.+... ++.+..++|+.+..++...+. + ..+|+|+| +.... .+++.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT-----~~~~~-Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEEC-----TTTTC-SSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEec-----Chhhc-CCCCccC
Confidence 458999999999999999988873 788999999988776654443 3 48899999 33333 4667777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 101 ~~Vi 104 (212)
T 3eaq_A 101 DLVV 104 (212)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7766
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.11 Score=48.21 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=36.4
Q ss_pred cccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+..+|++.|--++..+.+.+. .+..|--++..- +.-.+.+|+.||+|+|||+.+-
T Consensus 164 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 164 NEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp ESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHHH
T ss_pred CCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHHH
Confidence 456678999998777777766552 122222222211 1123679999999999997443
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.07 E-value=0.67 Score=37.53 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=49.5
Q ss_pred CcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---h-CCCC
Q psy18032 84 GSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---H-ASPD 159 (333)
Q Consensus 84 GsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~-~~~~ 159 (333)
.+.|-. +++-++.... .+.++||.++++.-+..+.+.++. .++.+..++|+.+..++...+ . ...+
T Consensus 29 ~~~K~~-~L~~ll~~~~-----~~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 98 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATG-----KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSP 98 (185)
T ss_dssp GGGHHH-HHHHHHHHC------CCSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSS
T ss_pred cHHHHH-HHHHHHHhcC-----CCCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 456643 3444444321 256899999999999999998887 478899999987655543333 2 2588
Q ss_pred EEEECchHHHHHHHhccccccCchhhH
Q psy18032 160 IVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 160 IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
|||+| +.+..+ +++..+.++|
T Consensus 99 vLvaT-----~~~~~G-ldi~~~~~VI 119 (185)
T 2jgn_A 99 ILVAT-----AVAARG-LDISNVKHVI 119 (185)
T ss_dssp EEEEE-----C-------CCCSBSEEE
T ss_pred EEEEc-----ChhhcC-CCcccCCEEE
Confidence 99999 333333 4555565555
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.71 Score=37.55 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.4
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+++++.||+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 689999999999997543
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=89.89 E-value=0.11 Score=50.81 Aligned_cols=35 Identities=17% Similarity=0.082 Sum_probs=31.2
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+++.+.++.++.-++.||+|||.+|++|+++++..
T Consensus 179 ~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~ 213 (618)
T 2whx_A 179 DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK 213 (618)
T ss_dssp CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH
T ss_pred CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 47888889999999999999999999999988653
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.84 E-value=0.32 Score=43.32 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=33.9
Q ss_pred cCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.|.+. ....|...+. .....+.+++.||+|+|||..+-
T Consensus 6 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 6 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT----TCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC----CCCCCceEEEECCCCccHHHHHH
Confidence 4567899998888887777653 0111111100 01123679999999999996443
|
| >3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A | Back alignment and structure |
|---|
Probab=89.53 E-value=2.4 Score=39.99 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=38.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|....+.+-||||||+... .+.. . .+..+|||+|+...|.+.++.++.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a--~l~~--~----~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA--EIAE--R----HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH--HHHH--H----SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHH--HHHH--H----hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 35568899999999996432 2211 1 12358999999999999999999874
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.46 E-value=0.16 Score=43.38 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=31.7
Q ss_pred CCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 36 GGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+|+++.-.+...+.+.+. .+..|..+.... +...+.+++.||+|+|||...-
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 45788888777777777553 111121111110 1234679999999999996543
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.41 E-value=0.2 Score=46.47 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=38.0
Q ss_pred ccccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+.-+|++.|=-++..+.|++. .+..|--++..-+ --.+.+|+.||+|+|||+.+-
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHHH
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHHH
Confidence 3456778999998666666666653 2333433332221 123789999999999997443
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.39 Score=44.58 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=32.1
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
...++++.|+||||||... .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 3568999999999999864 334444333 2567888999988864
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=89.33 E-value=1.7 Score=41.85 Aligned_cols=83 Identities=14% Similarity=0.281 Sum_probs=61.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+.-+..+++.++.... .++.+..++|+.+..++.+.+. ...+|||+| +.+.. .+++.++
T Consensus 288 ~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT-----~~~~~-GiDip~v 360 (579)
T 3sqw_A 288 NYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCT-----DVGAR-GMDFPNV 360 (579)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEEC-----GGGTS-SCCCTTC
T ss_pred CCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEc-----chhhc-CCCcccC
Confidence 56899999999999999999987532 3788899999988766544443 358999999 34443 4778888
Q ss_pred hhhHH---------HHHHHhhcc
Q psy18032 183 QYTFK---------FVKELGKFT 196 (333)
Q Consensus 183 ~~lV~---------~i~~l~~~~ 196 (333)
.++|. ++..+++..
T Consensus 361 ~~VI~~~~p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 361 HEVLQIGVPSELANYIHRIGRTA 383 (579)
T ss_dssp CEEEEESCCSSTTHHHHHHTTSS
T ss_pred CEEEEcCCCCCHHHhhhhccccc
Confidence 88775 666666543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.16 Score=44.81 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=34.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.+.+. ...|.......... +..++.+++.||+|+|||..+-
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~-v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQEL-VQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHH-HHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHH-HHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 4557899998777777777653 00010000000111 2345789999999999997543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.30 E-value=0.2 Score=46.87 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=37.3
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+.-+|++.+--++..+.|++. .+..|-.++..- +.--+.+|+.||+|+|||+.+-
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHHHH
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHHHH
Confidence 46678999999888888888763 122222222111 1224789999999999997443
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.17 Score=47.16 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=36.2
Q ss_pred ccCCCcccccCCCHHHHHHHHhC---CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKR---GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~---g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|++.+--++..+.|.+. .+..|.-++..- +.-.+.+|+.||+|+|||+.+-
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHHH
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHHH
Confidence 46678999998777777666653 122222222211 1123789999999999997543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.43 Score=40.09 Aligned_cols=51 Identities=22% Similarity=0.204 Sum_probs=30.6
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.|.-+++.||+|+|||....--+...... +..++++.-. ....++.+.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~-----~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM-----GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT-----TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEcc-CCHHHHHHHHHH
Confidence 46779999999999997543333332222 4467777643 334555555543
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.70 E-value=1.6 Score=40.64 Aligned_cols=85 Identities=18% Similarity=0.156 Sum_probs=46.3
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchHH----
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDN---- 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---- 149 (333)
-+++++++|+|||....--+ ..+.. .|.+++++. |.+.-+. ++++.++...++.+.....+.+...
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~----~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK----RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH----CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 48899999999996544222 22222 255676666 4555443 3445555566776654433333221
Q ss_pred HHHHhh-CCCCEE-EECchHH
Q psy18032 150 QFARLH-ASPDIV-VATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~Il-I~TP~rl 168 (333)
...... ++++++ |=||+++
T Consensus 174 al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 122222 346655 6688864
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.89 Score=35.39 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCCcEEEECCCCcHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTAC 90 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~ 90 (333)
.|+.+.+.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999953
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=88.46 E-value=0.7 Score=41.94 Aligned_cols=70 Identities=16% Similarity=0.194 Sum_probs=52.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+++.++. .+..+..++|+.+..++...+ .+ ..+|||+| +.+.. .+++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T-----~~~~~-Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTT-----NVCAR-GIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----GGGTS-SCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEc-----Ccccc-CCCccCC
Confidence 46899999999999999999987 377888999998876665444 22 48899999 34433 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 336 ~~Vi 339 (412)
T 3fht_A 336 SVVI 339 (412)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=88.40 E-value=0.74 Score=40.67 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=16.2
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996544
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=88.38 E-value=0.48 Score=39.87 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=27.1
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRE 118 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~ 118 (333)
|.=+++.|++|+|||...+-. +.++.. .+.+++++.|...
T Consensus 12 G~i~litG~mGsGKTT~ll~~-~~r~~~----~g~kVli~~~~~d 51 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR-LHRLEY----ADVKYLVFKPKID 51 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH-HHHHHH----TTCCEEEEEECCC
T ss_pred cEEEEEECCCCCcHHHHHHHH-HHHHHh----cCCEEEEEEeccC
Confidence 455888999999999755433 333332 2567888877653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=87.80 E-value=1.3 Score=41.18 Aligned_cols=85 Identities=21% Similarity=0.165 Sum_probs=43.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchH----H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----N 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 149 (333)
-++++||+|+|||....--+. .+.. .+.+++++. +.+.-+.+ .+..++...++.+.....+.+.. .
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~dp~~i~~~ 170 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQNPIEIAKK 170 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccCCHHHHHHH
Confidence 488899999999964442222 2222 255666665 44444433 34444445566554433333321 1
Q ss_pred HHHHhh-CCCCE-EEECchHH
Q psy18032 150 QFARLH-ASPDI-VVATPGRF 168 (333)
Q Consensus 150 ~~~~l~-~~~~I-lI~TP~rl 168 (333)
...... +++++ +|-||+++
T Consensus 171 al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCS
T ss_pred HHHHHHhcCCCEEEEECCCCc
Confidence 222222 34555 57788863
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=0.65 Score=37.64 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=26.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+=.++.||.|+|||...+-- +.+... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~-~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSF-VEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHH-HHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHH-HHHHHH----CCCeEEEEeecc
Confidence 555789999999999765433 333222 255788888884
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=87.62 E-value=0.15 Score=43.53 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=32.6
Q ss_pred cCCCcccccCCCHHHHHHHHhC-C-CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR-G-YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|+++.-.+...+.+.+. . +..|...+... ....+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHHH
Confidence 3456899998888777766542 0 11111111100 1113579999999999996443
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=87.43 E-value=0.74 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.6
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45689999999999997544
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=87.39 E-value=0.12 Score=46.08 Aligned_cols=53 Identities=11% Similarity=0.110 Sum_probs=34.5
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh-----cCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL-----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-----~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|+++.-.+...+.|.+.= . .|. ..|.+. ..+.+++.||+|+|||..+-
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i-~--~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAV-I--LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHT-H--HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCCHHHhcChHHHHHHHHHHH-H--HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 55678999988888888876631 0 011 011111 13579999999999997543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=87.31 E-value=0.63 Score=38.06 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=26.7
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTR 117 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~ 117 (333)
|+=.++.||.|||||...+-- +.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~-a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRR-IRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHH-HHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHH-HHHHHH----CCCEEEEEEecc
Confidence 444788999999999765533 333332 367899998884
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.00 E-value=0.27 Score=44.88 Aligned_cols=31 Identities=35% Similarity=0.618 Sum_probs=25.2
Q ss_pred ccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 298 VLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 298 vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++++.++.-.+.||+|||.+|++|+++.+..
T Consensus 74 ~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~ 104 (414)
T 3eiq_A 74 CIKGYDVIAQAQSGTGKTATFAISILQQIEL 104 (414)
T ss_dssp HHTTCCEEECCCSCSSSHHHHHHHHHHHCCT
T ss_pred HhCCCCEEEECCCCCcccHHHHHHHHHHHhh
Confidence 3444566777899999999999999998864
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.27 E-value=1.2 Score=38.57 Aligned_cols=55 Identities=9% Similarity=0.006 Sum_probs=33.0
Q ss_pred CCCcccccCCCHHHHHHHHhCCCCCCcHHH-HhHHHHH-hcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRGYKIPTPIQ-RKTIPLV-LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i-~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|+++.-.+...+.+.+.= . .+.. .+.+..+ ..++.+++.||+|+|||..+-
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4568999887787777776531 0 0000 0000011 135789999999999997543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.21 E-value=0.24 Score=41.75 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.4
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.+.++.++.-+|.||+|||.+|.+++++....
T Consensus 70 i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~ 103 (235)
T 3llm_A 70 LEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQ 103 (235)
T ss_dssp HHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhh
Confidence 3445567788899999999999999999887643
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.14 Score=40.83 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=50.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+.+.++. .++.+..++|+.+..++...+.. ..+|||+| +.+..+ +++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-----~~~~~G-id~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-----DVAARG-IDIPDV 99 (170)
Confidence 45899999999999999888876 37788888888776555444322 47899999 333333 556666
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
.++|.
T Consensus 100 ~~Vi~ 104 (170)
T 2yjt_D 100 SHVFN 104 (170)
Confidence 66663
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.78 E-value=2.2 Score=37.45 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=53.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+.+.+.. .++.+..++|+.+..++...+. ...+|+|+| +.... .+++.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT-----~va~~-Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVAT-----DVAAR-GLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEEC-----STTTC-STTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEe-----chhhc-Cccccce
Confidence 45899999999999998888775 4788999999988766655443 258999999 33333 4677777
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
.++|.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77774
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.70 E-value=0.62 Score=39.13 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=29.5
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|.-+++.|++|+|||...+--+.+.... .+..+++++-. +-..++.+.+..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~----~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEE----YGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHH----HCCCEEEEESS-SCHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCCceeeccc-CCHHHHHHHHHH
Confidence 4669999999999995443323332222 13346666533 335555555544
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=85.47 E-value=0.96 Score=43.03 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHhCCCCCCcHHHHhHHHH-HhcCCcEEEECCCCcHHHH
Q psy18032 50 KGVLKRGYKIPTPIQRKTIPL-VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 50 ~~l~~~g~~~~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~ 89 (333)
..|.+.|. +++.+..-+.. +..|..++++||||||||.
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 34555553 23444444443 5678899999999999995
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=85.45 E-value=0.55 Score=41.67 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=21.1
Q ss_pred HhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 65 RKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 65 ~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+...+..+.++++.||+|+|||...-
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 3444456668899999999999996443
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=85.38 E-value=0.29 Score=44.28 Aligned_cols=33 Identities=39% Similarity=0.608 Sum_probs=26.2
Q ss_pred ccccccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 296 PLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 296 ~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
+.+.++.++.-.+.||+|||.+|++|+++.+..
T Consensus 53 ~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~ 85 (394)
T 1fuu_A 53 MPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT 85 (394)
T ss_dssp HHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCT
T ss_pred HHHhCCCCEEEECCCCChHHHHHHHHHHHHhhc
Confidence 334444567778899999999999999998865
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.34 E-value=0.39 Score=42.77 Aligned_cols=26 Identities=12% Similarity=-0.000 Sum_probs=19.0
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhh
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLK 100 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~ 100 (333)
+.++++.||+|+|||++.-. ++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 35799999999999975543 344444
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.22 E-value=1.1 Score=42.51 Aligned_cols=43 Identities=19% Similarity=0.191 Sum_probs=29.0
Q ss_pred HHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 48 VLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 48 l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+.+.+.+ .+-.-...=..+...+..+.++++.||+|+|||..+
T Consensus 16 l~~~l~~-~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 16 LSSSLEK-GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHT-TCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHh-hhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444443 333334444556666778899999999999999643
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=0.21 Score=42.64 Aligned_cols=53 Identities=15% Similarity=0.012 Sum_probs=33.1
Q ss_pred cCCCcccccCCCHHHHHHHHhCC--CCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRG--YKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~ 91 (333)
.+..+|+++.-.+.....+++.- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45678999987777776666531 111 12222211 1245999999999999643
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.10 E-value=0.15 Score=44.40 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=28.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHH-HhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQ-RKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q-~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+++.+.|.+.= . .|.. .+++..+ .-.+.+++.||+|+|||...-
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i-~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAI-L--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp --------CCHHHHHHHHHHHHH-T--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHH
Confidence 35678999998788887776531 1 1111 1222221 112459999999999996433
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=85.04 E-value=0.75 Score=36.45 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
..+++.||+|+|||....
T Consensus 44 ~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp CEEEEECCTTSCHHHHHH
T ss_pred CceEEECCCCCCHHHHHH
Confidence 579999999999996543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=85.03 E-value=3.1 Score=38.51 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=42.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEc--ccHHHHHHHHHHHHHHhccCCceEEEEECCcchH----H
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILS--PTRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----N 149 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~ 149 (333)
-+.+.+++|+|||.....-+.. +.. .+.+++++. +.+..+.++...+. ...++.+.....+.+.. +
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~-l~~----~g~~Vllvd~D~~r~aa~~qL~~~~---~~~gv~v~~~~~~~~p~~i~~~ 171 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALY-YKG----KGRRPLLVAADTQRPAAREQLRLLG---EKVGVPVLEVMDGESPESIRRR 171 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH-HHT----TTCCEEEEECCSSCHHHHHHHHHHH---HHHTCCEEECCTTCCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEeeccccCchhHHHHHHhc---ccCCccEEecCCCCCHHHHHHH
Confidence 4778899999999644422221 111 244566554 44454544333332 23455554332222221 2
Q ss_pred HHHHh-hCCCC-EEEECchHH
Q psy18032 150 QFARL-HASPD-IVVATPGRF 168 (333)
Q Consensus 150 ~~~~l-~~~~~-IlI~TP~rl 168 (333)
....+ .++++ |||=||+++
T Consensus 172 ~l~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 172 VEEKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHCCCCEEEEcCCCcc
Confidence 22333 24565 678899875
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=84.92 E-value=0.77 Score=41.90 Aligned_cols=42 Identities=26% Similarity=0.502 Sum_probs=29.4
Q ss_pred cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
.+.++++.||||||||...-.-+.+.. . .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H----CCCEEEEEeCCcCH
Confidence 457899999999999965544333332 2 25678888887663
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=84.74 E-value=1 Score=37.30 Aligned_cols=20 Identities=15% Similarity=0.106 Sum_probs=16.4
Q ss_pred cCCcEEEECCCCcHHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+++.||+|+|||....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999996443
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=84.74 E-value=1 Score=37.36 Aligned_cols=50 Identities=10% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHHHhCCCCCCcHHHHhHHHHHhcC----CcEEEECCCCcHHHHHHHHHHHHHh
Q psy18032 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEG----RDVVAMARTGSGKTACFLIPMLEKL 99 (333)
Q Consensus 47 ~l~~~l~~~g~~~~~~~Q~~~i~~i~~g----~d~l~~a~TGsGKT~~~~l~~l~~l 99 (333)
.|.+.|+-.|++ |... ...+..++++ +.+++.||+|+|||..+ ..++..+
T Consensus 29 ~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 29 PIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp HHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH-HHHHHHH
T ss_pred HHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH-HHHHHHh
Confidence 566666655555 5555 5666666665 24999999999999643 4455544
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=84.68 E-value=1.7 Score=49.50 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=35.2
Q ss_pred CCHHHHHHHHhCCCCCCcHHH-Hh---HHHHHhcCCcEEEECCCCcHHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQ-RK---TIPLVLEGRDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q-~~---~i~~i~~g~d~l~~a~TGsGKT~~~~l 93 (333)
+.+.+.+.+.+.|+. +++.+ .+ ....+.....++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 455677788888887 56654 22 333445567899999999999988764
|
| >3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.51 E-value=0.6 Score=42.25 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=20.9
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 34566788988 888999999999654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=84.18 E-value=1.5 Score=38.78 Aligned_cols=43 Identities=16% Similarity=0.037 Sum_probs=28.5
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHH
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~ 92 (333)
+|+++--.+...+.+... +.... ...++++.||+|+|||..+.
T Consensus 27 ~~~~iiG~~~~~~~l~~~------------l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVF------------IAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp SGGGCCSCHHHHHHHHHH------------HHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CHHHhCChHHHHHHHHHH------------HHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 788887677666655431 11111 22579999999999997544
|
| >1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* | Back alignment and structure |
|---|
Probab=84.14 E-value=0.72 Score=41.15 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 3445678888 889999999999754
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=2 Score=37.24 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.1
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+.++++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=0.34 Score=44.46 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=22.4
Q ss_pred ccccEEEEccCCCchhhHHHhhhhhhccC
Q psy18032 300 EGRDVVAMARTGSGKTACFLFYFFFRFDR 328 (333)
Q Consensus 300 ~~~~~~~~grtG~g~~~~~~lp~~~~~~~ 328 (333)
++.++.-++.||+|||.+|++|+++...+
T Consensus 35 ~~~~~lv~apTGsGKT~~~l~~~~~~~~~ 63 (414)
T 3oiy_A 35 QGKSFTMVAPTGVGKTTFGMMTALWLARK 63 (414)
T ss_dssp TTCCEECCSCSSSSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 33455567789999999999999886643
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=83.98 E-value=1.9 Score=37.23 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCCCcHHHH-hHHHHHhcCC-----cEEEECCCCcHHHHHHH
Q psy18032 47 EVLKGVLKRGYKIPTPIQR-KTIPLVLEGR-----DVVAMARTGSGKTACFL 92 (333)
Q Consensus 47 ~l~~~l~~~g~~~~~~~Q~-~~i~~i~~g~-----d~l~~a~TGsGKT~~~~ 92 (333)
.+.+.|+-.||. +++. .++...++|+ .+++.||+|+|||..+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 678888888877 4443 3355677664 39999999999997555
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=83.81 E-value=0.59 Score=37.00 Aligned_cols=19 Identities=26% Similarity=0.372 Sum_probs=15.6
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4579999999999996443
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=83.75 E-value=0.83 Score=39.04 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=16.1
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999644
|
| >3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=0.71 Score=41.54 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 87 v~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 87 VDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhHhhCCCceEEEEecCCCCCCCeEE
Confidence 444567888 789999999999764
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=83.39 E-value=0.77 Score=41.24 Aligned_cols=48 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHH
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..+|+++--.+...+.+.. ....+.. ++.+++.||+|+|||....
T Consensus 37 ~~p~~~~~~ivG~~~~~~~l~~------------l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 37 LEPRQASQGMVGQLAARRAAGV------------VLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp SCBCSEETTEESCHHHHHHHHH------------HHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred cCcCcchhhccChHHHHHHHHH------------HHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 3445557777656655554332 1122222 3579999999999997544
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=83.36 E-value=2.9 Score=36.91 Aligned_cols=71 Identities=10% Similarity=0.199 Sum_probs=51.7
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
.+.++||.+++++-+..+++.++. .+..+..++|+.+..++...+ .+ ..+|+|+|. .+..+ +++.+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G-id~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG-IDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH-CCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC-CCccc
Confidence 356899999999999999998887 477888999988776654443 22 578999993 33333 45556
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
+.++|
T Consensus 307 ~~~Vi 311 (367)
T 1hv8_A 307 LNCVI 311 (367)
T ss_dssp CSEEE
T ss_pred CCEEE
Confidence 66555
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=83.19 E-value=3.2 Score=37.17 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=51.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++. .++.+..++|+.+..++...+. + ..+|||+|. .+. ..+++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS-SCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh-cCCCcccC
Confidence 56899999999999999998887 4778889999987666544432 2 589999993 232 23566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 320 ~~Vi 323 (391)
T 1xti_A 320 NIAF 323 (391)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=83.13 E-value=1.9 Score=39.81 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=18.2
Q ss_pred HHhHHHHHhc--CCcEEEECCCCcHHHH
Q psy18032 64 QRKTIPLVLE--GRDVVAMARTGSGKTA 89 (333)
Q Consensus 64 Q~~~i~~i~~--g~d~l~~a~TGsGKT~ 89 (333)
+..++..++. |.-+++.||||||||.
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKST 182 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHH
Confidence 4444544443 3458999999999995
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=83.06 E-value=0.22 Score=42.97 Aligned_cols=18 Identities=33% Similarity=0.200 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999997554
|
| >4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=0.86 Score=40.99 Aligned_cols=25 Identities=40% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 3445667888 788999999999754
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=82.83 E-value=1.4 Score=36.31 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.6
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+++.||+|+|||...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4677999999999999543
|
| >2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=82.80 E-value=0.87 Score=41.05 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345678887 888999999999754
|
| >2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.75 E-value=0.89 Score=40.64 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.7
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++-|+||||||...
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46677889988 888999999999654
|
| >2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* | Back alignment and structure |
|---|
Probab=82.74 E-value=0.87 Score=41.29 Aligned_cols=24 Identities=38% Similarity=0.538 Sum_probs=19.2
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 77 VTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceEEEeecCCCCCCceEE
Confidence 445667887 888999999999754
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=82.71 E-value=1.4 Score=41.06 Aligned_cols=49 Identities=20% Similarity=0.131 Sum_probs=32.5
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHH
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~ 92 (333)
...+...|+++.-.++..+.+... +..+. .++++++.||+|+|||..+.
T Consensus 29 ~~~~~~~~~~iiG~~~~~~~l~~~------------~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 29 SGLAKQAASGLVGQENAREACGVI------------VELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TSCBCSEETTEESCHHHHHHHHHH------------HHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred ccChhhchhhccCHHHHHHHHHHH------------HHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 345556788887777776655431 11222 24689999999999996554
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=82.67 E-value=0.19 Score=43.18 Aligned_cols=53 Identities=19% Similarity=0.175 Sum_probs=29.5
Q ss_pred CCCcccccCCCHHHHHHHHhC-C-CCCCcHHHHhHHHHH--hcCCcEEEECCCCcHHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKR-G-YKIPTPIQRKTIPLV--LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~-g-~~~~~~~Q~~~i~~i--~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+|+++.-.+...+.+.+. . +..| +.+..+ ...+.+++.||+|+|||...-
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYP-----ERYANLGAKIPKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHHHHHCH-----HHHHHHSCCCCSCCCCBCSSCSSHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCh-----HHHHHCCCCCCceEEEECCCCCcHHHHHH
Confidence 345788876555555555432 0 1111 111111 124579999999999996544
|
| >1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 | Back alignment and structure |
|---|
Probab=82.51 E-value=0.85 Score=41.19 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=19.1
Q ss_pred HHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 68 IPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 68 i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..++.|.| +++-|+||||||...
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 345677887 888999999999654
|
| >2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* | Back alignment and structure |
|---|
Probab=82.47 E-value=0.9 Score=41.22 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++.|+||||||...
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4455678988 888999999999654
|
| >4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.38 E-value=0.94 Score=41.69 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=21.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 6777889988 7889999999997653
|
| >3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* | Back alignment and structure |
|---|
Probab=82.36 E-value=0.83 Score=41.52 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 3445678888 888999999999654
|
| >3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=82.28 E-value=0.9 Score=41.06 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 3445667888 889999999999754
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=82.28 E-value=0.51 Score=44.08 Aligned_cols=55 Identities=11% Similarity=0.027 Sum_probs=33.3
Q ss_pred cCCCcccccCCCHHHHHHHHhCC---CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRG---YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+..+|++++-.+...+.|.+.- ...|..++. .....+.+++.||+|+|||..+-
T Consensus 128 ~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~----~~~~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 128 RPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG----KRTPWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG----GGCCCSEEEEECSTTSSHHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc----cCCCCceEEEECCCCCCHHHHHH
Confidence 44568999887777777776531 011111110 01223679999999999996543
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=82.16 E-value=2.2 Score=37.49 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999996443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=82.04 E-value=2.3 Score=39.39 Aligned_cols=59 Identities=10% Similarity=0.027 Sum_probs=43.5
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEM 175 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~ 175 (333)
+.++||++|+++-+..+++.++.. +.++..++|+... +..+... ...+|||+| +.+..+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~-~~~~~f~~g~~~vLVaT-----~v~e~G 230 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFE-SEYPKCKSEKWDFVITT-----DISEMG 230 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHH-HHTTHHHHSCCSEEEEC-----GGGGTS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHH-HHHHhhcCCCCeEEEEC-----chHHcC
Confidence 458999999999999999998874 7888888887432 2223333 358999999 555554
|
| >3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} | Back alignment and structure |
|---|
Probab=81.99 E-value=0.9 Score=40.93 Aligned_cols=26 Identities=38% Similarity=0.592 Sum_probs=21.7
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 6777888988 7889999999997653
|
| >3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9 | Back alignment and structure |
|---|
Probab=81.99 E-value=0.89 Score=41.06 Aligned_cols=25 Identities=28% Similarity=0.530 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 4556778988 788999999999764
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=2.3 Score=48.98 Aligned_cols=48 Identities=19% Similarity=0.206 Sum_probs=34.7
Q ss_pred CCHHHHHHHHhCCCCCCcHHH-HhHHHH---HhcCCcEEEECCCCcHHHHHHH
Q psy18032 44 LGFEVLKGVLKRGYKIPTPIQ-RKTIPL---VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 44 l~~~l~~~l~~~g~~~~~~~Q-~~~i~~---i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
|.+.+.+.+.+.|+. |++.+ .++++. +.....++++||||||||.|+-
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 456777888889998 55544 344433 3345679999999999999876
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=81.85 E-value=1.2 Score=40.20 Aligned_cols=17 Identities=35% Similarity=0.413 Sum_probs=14.5
Q ss_pred cCCcEEEECCCCcHHHH
Q psy18032 73 EGRDVVAMARTGSGKTA 89 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~ 89 (333)
.+.-++++||||||||.
T Consensus 122 ~~g~i~I~GptGSGKTT 138 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKST 138 (356)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 44579999999999995
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=81.83 E-value=0.85 Score=40.06 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=15.0
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|+-+.+.||+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999996444
|
| >1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.82 E-value=0.9 Score=40.94 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 3455678888 888999999999754
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=81.80 E-value=3.3 Score=37.02 Aligned_cols=70 Identities=10% Similarity=0.180 Sum_probs=52.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+..+++.++. .+..+..++|+.+..++.+.+ .+ ..+|||+|. .+.. .+++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~-Gidip~~ 312 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR-GIDIPTV 312 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS-SCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc-CCCcccC
Confidence 46899999999999999998887 477888999998776654444 23 478999993 3333 3666677
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 313 ~~Vi 316 (395)
T 3pey_A 313 SMVV 316 (395)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6666
|
| >1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* | Back alignment and structure |
|---|
Probab=81.61 E-value=0.95 Score=41.67 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 3445677887 8889999999997643
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=81.52 E-value=0.72 Score=41.74 Aligned_cols=19 Identities=47% Similarity=0.545 Sum_probs=17.1
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+..|+.+.++||||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 5678999999999999996
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=81.39 E-value=7.3 Score=37.61 Aligned_cols=71 Identities=11% Similarity=0.144 Sum_probs=55.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+.++++.++. .++.+..++|+.+..++.+.+. ...+|||+|. .+ ...++..++
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~----~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p~V 336 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQN----LGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKPDV 336 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCSCE
T ss_pred CCCeEEEeCcHHHHHHHHHHHHH----CCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCcccc
Confidence 56899999999999999999987 4788999999988766644432 3589999993 33 234678888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
+++|.
T Consensus 337 ~~VI~ 341 (591)
T 2v1x_A 337 RFVIH 341 (591)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88885
|
| >1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... | Back alignment and structure |
|---|
Probab=81.37 E-value=0.89 Score=41.14 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=19.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 4455678888 888999999999654
|
| >3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* | Back alignment and structure |
|---|
Probab=81.27 E-value=0.95 Score=41.75 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=21.9
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++.|+||||||...
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46778889998 788999999999754
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=2.2 Score=39.56 Aligned_cols=68 Identities=13% Similarity=0.120 Sum_probs=45.1
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC-CCCEEEECchHHHHHHHhccccccCchhh
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA-SPDIVVATPGRFLHIVVEMELKLSSIQYT 185 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~l 185 (333)
+.++||++|+++-+.++++.++.. ++++..++|+... ...+...+ ..+|||+|. .+..+ +++. +.++
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~-----v~e~G-iDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD-----IAEMG-ANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS-----STTCC-TTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC-----hhhee-eccC-ceEE
Confidence 568999999999999999998873 7788888885433 22333443 489999993 44433 4555 6655
Q ss_pred H
Q psy18032 186 F 186 (333)
Q Consensus 186 V 186 (333)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=81.26 E-value=0.62 Score=40.72 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.++++.||+|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999996554
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=81.23 E-value=0.35 Score=41.84 Aligned_cols=52 Identities=15% Similarity=0.015 Sum_probs=33.3
Q ss_pred CCCcccccCCCHHHHHHHHhCC--CCCCcHHHHhHHHHHh--cCCcEEEECCCCcHHHHHH
Q psy18032 35 MGGGFQSFGLGFEVLKGVLKRG--YKIPTPIQRKTIPLVL--EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 35 ~~~~f~~~~l~~~l~~~l~~~g--~~~~~~~Q~~~i~~i~--~g~d~l~~a~TGsGKT~~~ 91 (333)
+..+|+++.-.++..+.+++.- |.. ...+..+- -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~-----~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKN-----PSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHC-----HHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHC-----HHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 5678999988888877776541 111 11222211 1245999999999999643
|
| >1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* | Back alignment and structure |
|---|
Probab=81.21 E-value=0.94 Score=40.79 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=21.1
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 5666778988 8889999999997653
|
| >2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* | Back alignment and structure |
|---|
Probab=81.21 E-value=1 Score=41.16 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.3
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++-|+||||||....
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 3445678887 8889999999997643
|
| >2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=81.10 E-value=0.95 Score=41.18 Aligned_cols=25 Identities=44% Similarity=0.609 Sum_probs=19.5
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++-|+||||||...
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 3445677888 888999999999654
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=81.08 E-value=2.1 Score=41.95 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=45.9
Q ss_pred CCcHHHHhHHHHHhcCC--cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVLEGR--DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~--d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.+|.-|++++..+..-. -.++.|+-|.|||.+..+.+-.. .. .++|.+|+.+=+....+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~-------~~~vtAP~~~a~~~l~~~~ 237 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AG-------RAIVTAPAKASTDVLAQFA 237 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SS-------CEEEECSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-Hh-------CcEEECCCHHHHHHHHHHh
Confidence 57999999999988732 37999999999997666655443 21 4699999999777655543
|
| >3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* | Back alignment and structure |
|---|
Probab=81.05 E-value=0.84 Score=41.46 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=20.8
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.+..++.|.| +++.|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788988 788899999999754
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=81.02 E-value=0.72 Score=36.98 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=15.7
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+=+.++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667899999999999643
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=80.98 E-value=1.1 Score=37.02 Aligned_cols=35 Identities=23% Similarity=0.167 Sum_probs=27.3
Q ss_pred CCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHH
Q psy18032 57 YKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~ 91 (333)
+..-+.-|..++..+..|.-+.+.||+|||||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34335567778888888999999999999999643
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=80.90 E-value=1.5 Score=39.06 Aligned_cols=19 Identities=42% Similarity=0.704 Sum_probs=17.0
Q ss_pred HhcCCcEEEECCCCcHHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTA 89 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~ 89 (333)
+..|+.+.++||||||||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4568999999999999996
|
| >3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.83 E-value=0.96 Score=41.33 Aligned_cols=32 Identities=34% Similarity=0.526 Sum_probs=23.5
Q ss_pred CcHHHHhHHH--------HHhcCCc--EEEECCCCcHHHHHH
Q psy18032 60 PTPIQRKTIP--------LVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 60 ~~~~Q~~~i~--------~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
+..-|.+++. .++.|.| +++-|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445666554 4667887 888999999999654
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.62 E-value=0.8 Score=37.31 Aligned_cols=21 Identities=19% Similarity=0.042 Sum_probs=16.8
Q ss_pred hcCCcEEEECCCCcHHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 356789999999999996544
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=80.35 E-value=0.67 Score=40.71 Aligned_cols=25 Identities=44% Similarity=0.627 Sum_probs=21.0
Q ss_pred cccEEEEccCCCchhhHHHhhhhhh
Q psy18032 301 GRDVVAMARTGSGKTACFLFYFFFR 325 (333)
Q Consensus 301 ~~~~~~~grtG~g~~~~~~lp~~~~ 325 (333)
+.++.-.+.||+|||.+|++|+++.
T Consensus 31 ~~~~lv~~~TGsGKT~~~~~~~~~~ 55 (337)
T 2z0m_A 31 GKNVVVRAKTGSGKTAAYAIPILEL 55 (337)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 3456677899999999999999875
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=80.15 E-value=3.8 Score=36.91 Aligned_cols=70 Identities=7% Similarity=0.073 Sum_probs=51.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+..+++.++.. ++.+..++|+.+..++...+ .+ ..+|||+|. .+.. .+++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~-Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR-GIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS-SCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc-CCCccCC
Confidence 458999999999999999998874 67888899998776654443 23 478999993 3333 3566666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 328 ~~Vi 331 (400)
T 1s2m_A 328 NVVI 331 (400)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 6665
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=80.06 E-value=1.1 Score=36.89 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=16.1
Q ss_pred cEEEECCCCcHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLE 97 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~ 97 (333)
-.+++|+.|||||.....-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 3689999999999865443333
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 333 | ||||
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 8e-27 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 6e-04 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 1e-23 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 1e-22 | |
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 4e-06 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 2e-22 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-22 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 4e-22 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 7e-22 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 6e-20 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 2e-18 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 1e-04 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 1e-15 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 3e-05 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 5e-15 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 0.004 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 5e-15 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 0.003 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 6e-15 | |
| d1wp9a1 | 200 | c.37.1.19 (A:1-200) putative ATP-dependent RNA hel | 2e-07 |
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 103 bits (256), Expect = 8e-27
Identities = 47/152 (30%), Positives = 76/152 (50%), Gaps = 4/152 (2%)
Query: 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLE 97
GF+ F L E+L+ ++ G++ P+ +Q + IP + G DV+ A++G GKTA F++ L+
Sbjct: 2 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 61
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGG--DSMDNQFARLH 155
+L+ T V L++ TRELA Q K + K+ + G ++
Sbjct: 62 QLEPV--TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 119
Query: 156 ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK 187
P IVV TPGR L + L L I++
Sbjct: 120 NCPHIVVGTPGRILALARNKSLNLKHIKHFIL 151
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 6e-04
Identities = 37/185 (20%), Positives = 63/185 (34%), Gaps = 17/185 (9%)
Query: 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTC----LLGGDSMDNQFARLHASPDIV 161
SG R +L P A+ F +++Q C +LG D + + + + V
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEH----PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 56
Query: 162 VATPGRFLHI-----VVEMELKLSSIQYTFKFVKELGKFTKLQSTCLLGG--DSMDNQFA 214
+AT + + V+ M K + K+ + G ++
Sbjct: 57 LATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 116
Query: 215 RLHASPDIVVATPGRFLHIVVEMELKLSSIQLSLTD--FKQDTSRIALDLVGDSTEMIHK 272
P IVV TPGR L + L L I+ + D K V + M
Sbjct: 117 LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPH 176
Query: 273 QRQSV 277
++Q +
Sbjct: 177 EKQVM 181
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 95.4 bits (236), Expect = 1e-23
Identities = 54/153 (35%), Positives = 85/153 (55%), Gaps = 7/153 (4%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L + +L Y+ PTPIQ+ IP +LE RD++A A+TGSGKTA FLIP++
Sbjct: 23 FDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINH 82
Query: 99 L-------KTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF 151
L + ++ T+ + LIL+PTRELA+Q ++ T L+S + GG +Q
Sbjct: 83 LVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQI 142
Query: 152 ARLHASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ ++VATPGR + + + ++ L +Y
Sbjct: 143 REVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.7 bits (227), Expect = 1e-22
Identities = 56/147 (38%), Positives = 84/147 (57%), Gaps = 5/147 (3%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLE 97
F L +L + +G++ PT IQ K IPL L ++VA ARTGSGKTA F IP++E
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 98 KLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHAS 157
+ + +G+ A+IL+PTRELA+Q ++ L L+ + GG ++ Q L +
Sbjct: 66 LVNEN---NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-N 121
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQY 184
+IVV TPGR L + L L +++Y
Sbjct: 122 ANIVVGTPGRILDHINRGTLNLKNVKY 148
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 44.7 bits (105), Expect = 4e-06
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 12/133 (9%)
Query: 125 KFVKELG--KFTKLQSTCL---LGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKL 179
++ G K T +Q + L + AR + A P L +
Sbjct: 17 NAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAI 76
Query: 180 ------SSIQYTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHI 233
++ L L+ + GG ++ Q L + +IVV TPGR L
Sbjct: 77 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDH 135
Query: 234 VVEMELKLSSIQL 246
+ L L +++
Sbjct: 136 INRGTLNLKNVKY 148
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.5 bits (226), Expect = 2e-22
Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+G+ G++ P+ IQ++ I ++G DV+A A++G+GKTA F I +L++
Sbjct: 14 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQ 73
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLG-GDSMDNQFARLHAS 157
++ +AL+L+PTRELA Q K V LG + +G + +
Sbjct: 74 IELDL--KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEA 131
Query: 158 PDIVVATPGRFLHIVVEMELKLSSIQYTF 186
P I+V TPGR ++ L I+
Sbjct: 132 PHIIVGTPGRVFDMLNRRYLSPKYIKMFV 160
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 90.6 bits (224), Expect = 3e-22
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 3/146 (2%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F L +L+GV G++ P+ IQ++ I ++EG DV+A A++G+GKT F I L++
Sbjct: 12 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 71
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
+ T +AL+L+PTRELALQ K V L ++ +GG S L
Sbjct: 72 IDTSV--KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DA 128
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
IVV TPGR + + I+
Sbjct: 129 QIVVGTPGRVFDNIQRRRFRTDKIKM 154
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (224), Expect = 4e-22
Identities = 47/132 (35%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F + GL ++L+G+ G++ P+ IQ++ I +++GRDV+A +++G+GKTA F I +L+
Sbjct: 19 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQC 78
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
L +ALIL+PTRELA+Q K + LG + +Q +GG ++ +L
Sbjct: 79 LDIQ--VRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQ 136
Query: 159 DIVVATPGRFLH 170
+V TPGR
Sbjct: 137 HVVAGTPGRVFD 148
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 7e-22
Identities = 49/150 (32%), Positives = 85/150 (56%), Gaps = 3/150 (2%)
Query: 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPM 95
G F+ + L E+L G+ + G++ P+PIQ ++IP+ L GRD++A A+ G+GK+ +LIP+
Sbjct: 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPL 61
Query: 96 LEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR-L 154
LE+L ++A+++ PTRELALQ + ++ K G + L
Sbjct: 62 LERLDLKK--DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119
Query: 155 HASPDIVVATPGRFLHIVVEMELKLSSIQY 184
+ +V+ATPGR L ++ + K+ +Q
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQM 149
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.3 bits (207), Expect = 6e-20
Identities = 58/146 (39%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F+ F L E+L G+ + G++ P+PIQ + IP+ + GRD++A A+ G+GKTA F+IP LE
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE- 61
Query: 99 LKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASP 158
K + ++ALI+ PTRELALQT + V+ LGK + GG ++ + RL+ +
Sbjct: 62 -KVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETV 120
Query: 159 DIVVATPGRFLHIVVEMELKLSSIQY 184
I+V TPGR L + LS
Sbjct: 121 HILVGTPGRVLDLASRKVADLSDCSL 146
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 80.7 bits (198), Expect = 2e-18
Identities = 23/128 (17%), Positives = 42/128 (32%), Gaps = 11/128 (8%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ ++ P IQ+ +L A A TG GKT+ L L
Sbjct: 31 KEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGK--- 87
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL------HASPDI 160
R ++ PT L +Q + +++ + + + L+G + I
Sbjct: 88 --RCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKI 145
Query: 161 VVATPGRF 168
V+ T
Sbjct: 146 VITTTQFL 153
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 10/32 (31%), Positives = 12/32 (37%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+L A A TG GKT+ L F
Sbjct: 51 WAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 72.4 bits (176), Expect = 1e-15
Identities = 27/140 (19%), Positives = 48/140 (34%), Gaps = 10/140 (7%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+VL+ GY+ P Q + I VL GRD + + TG GK+ C+ IP L
Sbjct: 15 QVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG------ 66
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 166
+++SP L ++ G ++ ++ ++ P
Sbjct: 67 --LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPE 124
Query: 167 RFLHIVVEMELKLSSIQYTF 186
R + L +
Sbjct: 125 RLMLDNFLEHLAHWNPVLLA 144
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDR 328
I VL GRD + + TG GK+ C+
Sbjct: 33 IIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGL 67
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 72.3 bits (176), Expect = 5e-15
Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 15/103 (14%)
Query: 70 LVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129
+ + R + G+GKT +L ++ A G+R LIL+PTR +A + + ++
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVR----EAIKRGLRTLILAPTRVVAAEMEEALRG 60
Query: 130 LGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172
L + A + + F +
Sbjct: 61 LPIRYQ-----------TPAIRAEHTGREIVDLMCHATFTMRL 92
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 36.1 bits (82), Expect = 0.004
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 297 LVLEGRDVVAMARTGSGKTACFLFYFFFR 325
+ + R + G+GKT +L
Sbjct: 5 IFRKKRLTIMDLHPGAGKTKRYLPAIVRE 33
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 70.8 bits (172), Expect = 5e-15
Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)
Query: 47 EVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATS 106
+ + + G + P Q + + V G++++ T +GKT + M+ + +
Sbjct: 13 YAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSL 72
Query: 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPG 166
+ P R LA + ++ K+ K +S D I+V T
Sbjct: 73 -----YVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLGDCD----IIVTTSE 123
Query: 167 RFLHIVVEMELKLSSIQYTF 186
+ ++ + ++
Sbjct: 124 KADSLIRNRASWIKAVSCLV 143
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 36.1 bits (82), Expect = 0.003
Identities = 6/34 (17%), Positives = 13/34 (38%)
Query: 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRF 326
+ + V G++++ T +GKT
Sbjct: 32 EAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREA 65
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 70.5 bits (171), Expect = 6e-15
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 39 FQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEK 98
F F +++ + + PT IQ + IP L G +V ++TG+GKT +L+P++EK
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEK 62
Query: 99 LKT--HAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA 156
+K + + A ++ +T K K K + + CL+GG +L+
Sbjct: 63 IKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV 122
Query: 157 SPDIVVATPGRFLHIVVEM 175
P IV+ TPGR + E
Sbjct: 123 QPHIVIGTPGRINDFIREQ 141
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 48.2 bits (113), Expect = 2e-07
Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 52 VLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111
VL+R P Q E + + + TG GKT ++ +L + G + L
Sbjct: 2 VLRRDLIQPRIYQEVIYAKCKE-TNCLIVLPTGLGKTLIAMMIAEYRLTKY----GGKVL 56
Query: 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH 155
+L+PT+ L LQ + + L + L G S + +
Sbjct: 57 MLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA 100
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 333 | |||
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 100.0 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 100.0 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 100.0 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 100.0 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 100.0 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 100.0 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 100.0 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 100.0 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 100.0 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.91 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.9 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.89 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.89 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.8 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.72 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.69 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.38 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.27 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.25 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.23 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.22 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.21 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.18 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.17 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.17 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.13 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.1 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.09 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.06 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.96 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.8 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.64 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.51 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 98.12 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.11 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 97.98 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 97.95 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.84 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 97.72 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.65 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 97.64 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 97.44 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.37 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 97.37 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 97.35 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 97.33 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 97.31 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.31 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 97.28 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.02 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 96.86 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 96.81 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 96.68 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 96.59 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 96.47 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.29 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.01 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.84 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.15 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.12 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 95.05 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.4 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.08 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 94.08 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 93.99 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 93.91 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.73 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 93.49 | |
| d1c4oa1 | 408 | Nucleotide excision repair enzyme UvrB {Thermus th | 93.38 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 93.35 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 93.08 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.9 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 92.88 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 92.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.72 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 92.3 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.26 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.14 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.0 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 91.92 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.48 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.42 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.33 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 91.21 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 91.07 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.45 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 90.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 90.05 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 89.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.32 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 89.27 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.16 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.12 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 89.09 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.04 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.66 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 88.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 88.29 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 87.42 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 87.02 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 86.69 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 86.6 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 86.23 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 86.2 | |
| d1bg2a_ | 323 | Kinesin {Human (Homo sapiens) [TaxId: 9606]} | 86.08 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 85.88 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 85.76 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 85.68 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 85.39 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 85.32 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.85 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 84.81 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.5 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.99 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 83.97 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 83.53 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 83.16 | |
| d1w36b1 | 485 | Exodeoxyribonuclease V beta chain (RecB), N-termin | 82.6 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 82.42 | |
| d1v8ka_ | 362 | Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090 | 82.22 | |
| d2zfia1 | 349 | Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090 | 82.18 | |
| d1goja_ | 354 | Kinesin {Neurospora crassa [TaxId: 5141]} | 82.14 | |
| d1sdma_ | 364 | Kinesin heavy chain-like protein {Potato (Solanum | 81.0 | |
| d1x88a1 | 345 | Kinesin {Human (Homo sapiens), mitotic kinesin eg5 | 80.98 | |
| d2ncda_ | 368 | Kinesin motor Ncd (non-claret disjunctional) {Frui | 80.78 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 80.24 |
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-41 Score=287.20 Aligned_cols=183 Identities=27% Similarity=0.518 Sum_probs=168.3
Q ss_pred ccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEE
Q psy18032 33 KKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALI 112 (333)
Q Consensus 33 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~li 112 (333)
.+...+|+++||+++++++|+++||..|||+|.++||.+++|+|++++||||||||+||++|+++.+... ..+++++|
T Consensus 13 ~~~~~sF~~l~L~~~l~~~L~~~g~~~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~--~~~~~~li 90 (222)
T d2j0sa1 13 VDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALI 90 (222)
T ss_dssp CCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEE
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhccccccccccc--ccCceeEE
Confidence 4556799999999999999999999999999999999999999999999999999999999999998763 34789999
Q ss_pred EcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 113 LSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 113 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
++||+||+.|+++.++.+++..++++..++|+....++...+..+++|+|+||+|+.+++..+.+.+++++++|+
T Consensus 91 l~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ 170 (222)
T d2j0sa1 91 LAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 170 (222)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred ecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccccccccccceeeeecchhH
Confidence 999999999999999999999999999999999999998889999999999999999999999999999999996
Q ss_pred --------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 --------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 --------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++..+|+++||||+++.+.+++
T Consensus 171 ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~~~~v~~l~ 208 (222)
T d2j0sa1 171 MLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMT 208 (222)
T ss_dssp HTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTG
T ss_pred hhhcCcHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHH
Confidence 333445556788999999999999887765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-38 Score=269.77 Aligned_cols=180 Identities=29% Similarity=0.560 Sum_probs=162.0
Q ss_pred CCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 36 GGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
.++|++++|+++++++|.++||+.|||+|+++||.+++|+|++++||||||||+||++|+++++... .++++++|++|
T Consensus 2 ~~~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~--~~~~~~lil~p 79 (206)
T d1veca_ 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhccccc--ccCcceEEEee
Confidence 5799999999999999999999999999999999999999999999999999999999999998763 45789999999
Q ss_pred cHHHHHHHHHHHHHHhccC-CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 116 TRELALQTFKFVKELGKFT-KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
|++|+.|+++.+..+.+.. ++.+....|+.....+...+..+++|+|+||+|+.+++..+.+.+++++++|+
T Consensus 80 t~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlDEaD~ll 159 (206)
T d1veca_ 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLL 159 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHT
T ss_pred cchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCccccccccchhccccccceEEEecccccc
Confidence 9999999999999887654 56778888888888888888899999999999999999999999999999996
Q ss_pred ------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+...++.++|+++||||+++.+..+.
T Consensus 160 ~~~f~~~i~~I~~~~~~~~Q~~l~SAT~~~~v~~l~ 195 (206)
T d1veca_ 160 SQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp STTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHH
T ss_pred ccchHHHHHHHHHhCCCCCEEEEEEecCCHHHHHHH
Confidence 334444556788999999999998887764
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-38 Score=270.95 Aligned_cols=179 Identities=30% Similarity=0.511 Sum_probs=158.0
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
++|+||||+++++++|+++||++|||+|.++||.+++|+|++++||||||||+||++|+++++.. ...+++++|++||
T Consensus 1 s~F~dl~L~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~--~~~~~~~lil~Pt 78 (207)
T d1t6na_ 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEP--VTGQVSVLVMCHT 78 (207)
T ss_dssp CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCC--CTTCCCEEEECSC
T ss_pred CCccccCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecc--cCCCceEEEEecc
Confidence 57999999999999999999999999999999999999999999999999999999999999876 3457899999999
Q ss_pred HHHHHHHHHHHHHHhccCC-ceEEEEECCcchHHHHHHhh-CCCCEEEECchHHHHHHHhccccccCchhhHH-------
Q psy18032 117 RELALQTFKFVKELGKFTK-LQSTCLLGGDSMDNQFARLH-ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~l~-~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------- 187 (333)
++|+.|+++.++.++...+ +++..++|+.+...+...+. .+++|+|+||+++.+++.++.+.+++++++|+
T Consensus 79 reL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDEaD~ll 158 (207)
T d1t6na_ 79 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 158 (207)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred chhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccCCceeccccceeehhhhhhhh
Confidence 9999999999999988764 67788889988877776664 57999999999999999999999999999996
Q ss_pred ----H---HHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ----F---VKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ----~---i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
+ +..+.+.++.++|+++||||+++.++.+.
T Consensus 159 ~~~~~~~~i~~I~~~~~~~~Q~il~SAT~~~~v~~l~ 195 (207)
T d1t6na_ 159 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVC 195 (207)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHH
T ss_pred hcCCcHHHHHHHHHhCCCCCEEEEEeeeCCHHHHHHH
Confidence 2 23344566788999999999987766554
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.4e-38 Score=270.03 Aligned_cols=184 Identities=27% Similarity=0.467 Sum_probs=160.5
Q ss_pred cccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEE
Q psy18032 32 KKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRAL 111 (333)
Q Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~l 111 (333)
.+++..+|++++|++.++++|.++||++|||+|+++||.++.|+|++++||||||||++|++|+++++.. ...++++|
T Consensus 7 ~~e~i~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~--~~~~~~al 84 (218)
T d2g9na1 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIEL--DLKATQAL 84 (218)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCT--TCCSCCEE
T ss_pred CCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecc--cccCccEE
Confidence 3467889999999999999999999999999999999999999999999999999999999999999976 34588999
Q ss_pred EEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh-hCCCCEEEECchHHHHHHHhccccccCchhhHH---
Q psy18032 112 ILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL-HASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--- 187 (333)
Q Consensus 112 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l-~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--- 187 (333)
|++||++|+.|+++.+..+....+..+..+.++....++.... .++++|+|+||+++.+++.++...+++++++|+
T Consensus 85 il~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDEa 164 (218)
T d2g9na1 85 VLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEA 164 (218)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESH
T ss_pred EEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccceEEEeeec
Confidence 9999999999999999999999999998888877665544333 346999999999999999999999999999996
Q ss_pred ----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++.++|++++|||+++.+..+.
T Consensus 165 D~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~~~~v~~~~ 204 (218)
T d2g9na1 165 DEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVT 204 (218)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHH
T ss_pred chhhcCchHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHH
Confidence 333344556788999999999998876654
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-37 Score=264.09 Aligned_cols=185 Identities=29% Similarity=0.456 Sum_probs=157.2
Q ss_pred cccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCce
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVR 109 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~ 109 (333)
.+-++...+|++|||+++++++|+++||++|||+|.++||.++.|+|++++||||||||++|++|+++++.. ...+++
T Consensus 3 ~~~~~~~~sF~~l~l~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~--~~~~~~ 80 (212)
T d1qdea_ 3 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDT--SVKAPQ 80 (212)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCT--TCCSCC
T ss_pred CCCcccccChhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhc--cCCCcc
Confidence 344577899999999999999999999999999999999999999999999999999999999999999976 345889
Q ss_pred EEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--
Q psy18032 110 ALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-- 187 (333)
Q Consensus 110 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-- 187 (333)
++|++||++|+.|++..+..+....++.+....++....++...++ +++|+|+||+++..++..+.+.+++++++|+
T Consensus 81 ~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 81 ALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred eEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccCceecCcceEEeehh
Confidence 9999999999999999999999888999999998888777766554 6899999999999999999999999999996
Q ss_pred -----------HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----------FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++..+|+++||||+++.+..+.
T Consensus 160 ad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~~~~v~~l~ 200 (212)
T d1qdea_ 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVT 200 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHH
Confidence 223344456778999999999998876654
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=100.00 E-value=5.7e-38 Score=272.34 Aligned_cols=187 Identities=31% Similarity=0.519 Sum_probs=166.1
Q ss_pred ccccCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhc-------
Q psy18032 31 KKKKMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHA------- 103 (333)
Q Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~------- 103 (333)
..++...+|+++||+++++++|.++||++|||+|.++||.+++|+|++++||||||||+||++|+++++....
T Consensus 15 ~~~~~~~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~ 94 (238)
T d1wrba1 15 SATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYS 94 (238)
T ss_dssp SCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------
T ss_pred CCCCccCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhccccccccc
Confidence 3456779999999999999999999999999999999999999999999999999999999999999986532
Q ss_pred ccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCch
Q psy18032 104 ATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQ 183 (333)
Q Consensus 104 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~ 183 (333)
...++++||++||++|+.|+++.+..++...++++..+.|+.....+.+....++||+|+||++|.+++..+.+.+++++
T Consensus 95 ~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~ 174 (238)
T d1wrba1 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK 174 (238)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred CCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccc
Confidence 23578999999999999999999999999999999999999998888888888999999999999999999999999999
Q ss_pred hhHH----------HHHHHhhcc-------ccceeeeecCCChHHHHHhhh
Q psy18032 184 YTFK----------FVKELGKFT-------KLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 184 ~lV~----------~i~~l~~~~-------~~~~~~l~~sAT~~~~v~~l~ 217 (333)
++|+ |.+++.+++ +.++|++++|||+++.++.++
T Consensus 175 ~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT~~~~v~~l~ 225 (238)
T d1wrba1 175 YIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLA 225 (238)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHH
T ss_pred eeeeehhhhhhhhccHHHHHHHHHHhcCCCCCCCEEEEEeeeCCHHHHHHH
Confidence 9996 334443332 246799999999998877764
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-36 Score=257.55 Aligned_cols=177 Identities=34% Similarity=0.539 Sum_probs=158.2
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
++|+++||+++++++|.++||++|||+|.++||.+++|+ |++++||||||||++|++|+++.... ..++++||++|
T Consensus 4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~---~~~~~~lil~p 80 (208)
T d1hv8a1 4 MNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE---NNGIEAIILTP 80 (208)
T ss_dssp CCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS---SSSCCEEEECS
T ss_pred cCHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeeeechhcccccceeeccccccccc---ccCcceEEEee
Confidence 699999999999999999999999999999999999985 99999999999999999999998665 45789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH--------
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-------- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-------- 187 (333)
|++|+.|+++.++.+....+.++...+|+.+..++.+.+. +++|+|+||+++.+++.++.+.+++++++|+
T Consensus 81 t~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad~l~~ 159 (208)
T d1hv8a1 81 TRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN 159 (208)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT
T ss_pred ccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCCCCcccCcEEEEEChHHhhc
Confidence 9999999999999999999999999999998888776654 7999999999999999999999999999996
Q ss_pred -----HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++.++|++++|||+++.+..+.
T Consensus 160 ~~~~~~i~~I~~~~~~~~Q~i~~SAT~~~~v~~~~ 194 (208)
T d1hv8a1 160 MGFIKDVEKILNACNKDKRILLFSATMPREILNLA 194 (208)
T ss_dssp TTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHH
T ss_pred CCChHHHHHHHHhCCCCCeEEEEEccCCHHHHHHH
Confidence 233344455678999999999988766554
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.8e-36 Score=254.41 Aligned_cols=179 Identities=35% Similarity=0.587 Sum_probs=164.7
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
.+|++|+|++.++++|+++||.+|||+|.++||.+++|+|++++||||||||++|++|+++.+... ..+.++++++|+
T Consensus 1 ~sF~~l~L~~~l~~~L~~~g~~~pt~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~--~~~~~~~~~~~~ 78 (206)
T d1s2ma1 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIMVPT 78 (206)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CChHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccc--cccccceeeccc
Confidence 489999999999999999999999999999999999999999999999999999999999998763 447789999999
Q ss_pred HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH---------
Q psy18032 117 RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK--------- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~--------- 187 (333)
.+++.+....+..+....++++...+|+.....+...+..+++|+|+||+++.+++..+.+.+++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DEaD~l~~~ 158 (206)
T d1s2ma1 79 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 158 (206)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred hhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccceeecccceEEEeechhhhhhh
Confidence 99999999999999999999999999999999998899899999999999999999999999999999996
Q ss_pred ----HHHHHhhccccceeeeecCCChHHHHHhhh
Q psy18032 188 ----FVKELGKFTKLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 188 ----~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~ 217 (333)
.+..+.+.++..+|++++|||+++.+..+.
T Consensus 159 ~f~~~v~~I~~~l~~~~Q~il~SATl~~~v~~~~ 192 (206)
T d1s2ma1 159 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFM 192 (206)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHH
T ss_pred hhHHHHHHHHHhCCCCCEEEEEEEeCCHHHHHHH
Confidence 333445556778999999999998887765
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=100.00 E-value=2.1e-33 Score=239.12 Aligned_cols=185 Identities=28% Similarity=0.493 Sum_probs=157.2
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
++|+++||+++++++|+++||++|||+|.++||.+++|+|++++||||||||+||++|+++.+... ..++..++++|+
T Consensus 1 t~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~--~~~~~~~~~~~~ 78 (209)
T d1q0ua_ 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 78 (209)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CccccCCcCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccc--cccccccccccc
Confidence 579999999999999999999999999999999999999999999999999999999999998763 346789999999
Q ss_pred HHHHHHHHHHHHHHhccC----CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH-----
Q psy18032 117 RELALQTFKFVKELGKFT----KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK----- 187 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~----- 187 (333)
.+++.+.+..+....... ...+..+.++.+...+......+++|+|+||+++..++.+....+++++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~lViDEad~ 158 (209)
T d1q0ua_ 79 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADL 158 (209)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHH
T ss_pred cchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccccccceEEEEeeccc
Confidence 999999999998765543 35666777777777666667778999999999999999999999999999996
Q ss_pred --------HHHHHhhccccceeeeecCCChHHHHHhhh----cCCcEE
Q psy18032 188 --------FVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIV 223 (333)
Q Consensus 188 --------~i~~l~~~~~~~~~~l~~sAT~~~~v~~l~----~~~~i~ 223 (333)
.+..+...++.+.|++++|||+++.+.+++ ++|.++
T Consensus 159 ll~~~f~~~v~~I~~~~~~~~Q~il~SATl~~~v~~l~~~~l~~p~~i 206 (209)
T d1q0ua_ 159 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 206 (209)
T ss_dssp HHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred ccccccHHHHHHHHHHCCCCCEEEEEEccCCHHHHHHHHHHCCCCEEE
Confidence 334445556788999999999987665543 455443
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.8e-25 Score=189.05 Aligned_cols=165 Identities=19% Similarity=0.221 Sum_probs=124.9
Q ss_pred CcccccCCCHHHHHHHHhC-CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 37 GGFQSFGLGFEVLKGVLKR-GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~-g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
..+|.+||++.+.+.|++. ||+.|+|+|.++++++++|+|+++++|||||||++|.+|++.. ..++++++|
T Consensus 2 ~~~e~~~l~~~~~~~l~~~fg~~~~rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~--------~~~~~~v~P 73 (206)
T d1oywa2 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (206)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CchhhCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc--------cCceEEecc
Confidence 4578999999999999987 9999999999999999999999999999999999999998864 458999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchH----HHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMD----NQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
+++|++|+.+.++.++ .......+..... ..........+++++||+++.............++++|+
T Consensus 74 ~~~L~~q~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH 149 (206)
T d1oywa2 74 LISLMKDQVDQLQANG----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAH 149 (206)
T ss_dssp CHHHHHHHHHHHHHTT----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGG
T ss_pred chhhhhhHHHHHHhhc----ccccccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeee
Confidence 9999999999998853 3344443333222 222233446899999999987655555555666666663
Q ss_pred --------HHHH------HhhccccceeeeecCCChHHHHH
Q psy18032 188 --------FVKE------LGKFTKLQSTCLLGGDSMDNQFA 214 (333)
Q Consensus 188 --------~i~~------l~~~~~~~~~~l~~sAT~~~~v~ 214 (333)
+..+ +...+ ...|++++|||+++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~ii~lSATl~~~v~ 189 (206)
T d1oywa2 150 CISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTR 189 (206)
T ss_dssp GGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHH
T ss_pred eeeccccchHHHHHHHHHHHHhC-CCCceEEEEeCCCHHHH
Confidence 1111 11112 25789999999977653
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.90 E-value=2.2e-24 Score=186.39 Aligned_cols=165 Identities=18% Similarity=0.132 Sum_probs=121.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
..|.+.++.+.+.+.+ +.++.+|+++|.++++.+++|+|++++||||+|||++++++++..... +.++||++||
T Consensus 22 ~~~~~~~~~~~~~~~~-~~~~~~p~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~-----~~rvliv~Pt 95 (237)
T d1gkub1 22 CLFPEDFLLKEFVEFF-RKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALK-----GKRCYVIFPT 95 (237)
T ss_dssp SCCTTHHHHHHHHHHH-HTTTCSCCHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTT-----SCCEEEEESC
T ss_pred ccCccchhHHHHHHHH-HhccCCCCHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHh-----cCeEEEEecc
Confidence 4555555566665544 557889999999999999999999999999999999999999887655 6789999999
Q ss_pred HHHHHHHHHHHHHHhccCCceE----EEEECCcchHHHHHHhh--CCCCEEEECchHHHHHHHhccccccCchhhHH-HH
Q psy18032 117 RELALQTFKFVKELGKFTKLQS----TCLLGGDSMDNQFARLH--ASPDIVVATPGRFLHIVVEMELKLSSIQYTFK-FV 189 (333)
Q Consensus 117 ~~L~~q~~~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~l~--~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~-~i 189 (333)
++|+.|+++.++++++..++.+ ....++.....+.+.+. .+++|+|+||+++.+.. ..+++++++|+ .+
T Consensus 96 ~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~----~~~~~~~~vVvDE~ 171 (237)
T d1gkub1 96 SLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDV 171 (237)
T ss_dssp HHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS----TTSCCCSEEEESCH
T ss_pred HHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHhh----hhcCCCCEEEEECh
Confidence 9999999999999988776543 33344444444433333 35899999999876532 34567777774 22
Q ss_pred HHH----------h-------------hccccceeeeecCCChHH
Q psy18032 190 KEL----------G-------------KFTKLQSTCLLGGDSMDN 211 (333)
Q Consensus 190 ~~l----------~-------------~~~~~~~~~l~~sAT~~~ 211 (333)
+.+ . ...+.+.|++++|||+++
T Consensus 172 d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~ 216 (237)
T d1gkub1 172 DAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKK 216 (237)
T ss_dssp HHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCC
T ss_pred hhhhhcccchhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence 211 0 111346788999999863
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.89 E-value=7.2e-24 Score=178.59 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=127.6
Q ss_pred CCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHH
Q psy18032 43 GLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQ 122 (333)
Q Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q 122 (333)
.++++++..|++.||++|+|+|.++++.+++|+|+++++|||||||.++.++++..+.. ++++|+++|+++|+.|
T Consensus 9 ~~~~~~~~~l~~~g~~~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~-----~~~vl~l~P~~~L~~q 83 (202)
T d2p6ra3 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVPLRALAGE 83 (202)
T ss_dssp HHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEESSHHHHHH
T ss_pred hhhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhc-----cCcceeecccHHHHHH
Confidence 37889999999999999999999999999999999999999999999999999988765 5689999999999999
Q ss_pred HHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc-------
Q psy18032 123 TFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF------- 195 (333)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~------- 195 (333)
+++.++++... ..++....|+..... .....+.++++||..+..++.+....+..++++|+ |+...+
T Consensus 84 ~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~--DE~h~~~~~~r~~ 157 (202)
T d2p6ra3 84 KYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVV--DEIHLLDSEKRGA 157 (202)
T ss_dssp HHHHHTTTTTT-TCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEE--TTGGGGGCTTTHH
T ss_pred HHHHHHHHhhc-cccceeeccCccccc---ccccccceeeeccHHHHHHHhccchhhhhhhhccc--cHHHHhcccccch
Confidence 99999887543 345555555544332 22346899999999999999888777777877773 222211
Q ss_pred -----------cccceeeeecCCChHH--HHHhhhc
Q psy18032 196 -----------TKLQSTCLLGGDSMDN--QFARLHA 218 (333)
Q Consensus 196 -----------~~~~~~~l~~sAT~~~--~v~~l~~ 218 (333)
.+...|.+++|||+++ ++..+.+
T Consensus 158 ~~~~~l~~i~~~~~~~~~l~lSATl~n~~~~~~~l~ 193 (202)
T d2p6ra3 158 TLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLD 193 (202)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCCCcEEEEcCCCCcHHHHHHHcC
Confidence 2346789999999863 4444443
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.89 E-value=1.7e-25 Score=200.04 Aligned_cols=206 Identities=15% Similarity=0.127 Sum_probs=132.1
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
+.+|+++++.||||||||++|+++++..... ++.++||++||++||.|+++.++.++ +.......+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~----~~~~~lvi~Ptr~La~q~~~~l~~~~----~~~~~~~~~------ 71 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIK----RGLRTLILAPTRVVAAEMEEALRGLP----IRYQTPAIR------ 71 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----HTCCEEEEESSHHHHHHHHHHTTTSC----CBCCC----------
T ss_pred hhcCCcEEEEECCCCCHHHHHHHHHHHHHHh----cCCEEEEEccHHHHHHHHHHHHhcCC----cceeeeEEe------
Confidence 4578999999999999999998888876655 26789999999999999998877642 221111111
Q ss_pred HHHhhCCCCEEEECchHHHHHHHhccccccCchhhHH------------HHHHHhhcc-ccceeeeecCCChHHHHHhhh
Q psy18032 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFK------------FVKELGKFT-KLQSTCLLGGDSMDNQFARLH 217 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~------------~i~~l~~~~-~~~~~~l~~sAT~~~~v~~l~ 217 (333)
........++++||+.+..... ....+.+++++|+ +...+.... ....+.+++|||.+.......
T Consensus 72 -~~~~~~~~i~~~t~~~l~~~~~-~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~~~~ 149 (305)
T d2bmfa2 72 -AEHTGREIVDLMCHATFTMRLL-SPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFP 149 (305)
T ss_dssp -----CCCSEEEEEHHHHHHHHT-SSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSC
T ss_pred -ecccCccccccCCcHHHHHHHh-cCccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCcceeeec
Confidence 1122356799999998776654 3445677888884 111111111 245788999999875432222
Q ss_pred cC-CcEEEeC---CCceEEEEEecchhhhhHHHHhhcchhhHHHHHHHhc--CCCccccccc--hHHHhhhCCCCccccc
Q psy18032 218 AS-PDIVVAT---PGRFLHIVVEMELKLSSIQLSLTDFKQDTSRIALDLV--GDSTEMIHKQ--RQSVRKWDPAKKKYVQ 289 (333)
Q Consensus 218 ~~-~~i~~~t---~~~i~~~~~~~~~k~~~l~lif~~~~~~~~~l~~~L~--g~~~~~lh~~--r~~l~~f~~g~~~vLv 289 (333)
.. ..+.... +................-.++||+++++++++++.|. |+++..+||+ .+....|++|+.++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv 229 (305)
T d2bmfa2 150 QSNAPIMDEEREIPERSWNSGHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTNDWDFVV 229 (305)
T ss_dssp CCSSCEEEEECCCCCSCCSSCCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHGGGGGTSCCSEEE
T ss_pred ccCCcceEEEEeccHHHHHHHHHHHHhhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHHHHhhhhccchhhhh
Confidence 11 1111100 0000000000000111225889999999999999997 8999999993 3445889999999999
Q ss_pred ccc
Q psy18032 290 VTD 292 (333)
Q Consensus 290 aTd 292 (333)
||+
T Consensus 230 aT~ 232 (305)
T d2bmfa2 230 TTD 232 (305)
T ss_dssp ECG
T ss_pred hhH
Confidence 998
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2.1e-19 Score=150.46 Aligned_cols=144 Identities=19% Similarity=0.188 Sum_probs=115.9
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCce
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQ 137 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 137 (333)
-+|+++|.+++..+. ++|+++++|||||||+++++++...+.. .+.++++++|+++|+.|.++.++++....+.+
T Consensus 8 ~~pr~~Q~~~~~~~~-~~n~lv~~pTGsGKT~i~~~~~~~~~~~----~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~ 82 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (200)
T ss_dssp HCCCHHHHHHHHHGG-GSCEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHHh-cCCeEEEeCCCCcHHHHHHHHHHHHHHh----cCCcEEEEcCchHHHHHHHHHHHHhhcccccc
Confidence 359999999999875 5789999999999999999988877665 25589999999999999999999998888888
Q ss_pred EEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhcc---------------ccceee
Q psy18032 138 STCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKFT---------------KLQSTC 202 (333)
Q Consensus 138 ~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~~---------------~~~~~~ 202 (333)
+....++......... ...++++++||+.+...+....+.+++++++|+ |+.+.+. ....+.
T Consensus 83 v~~~~~~~~~~~~~~~-~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIi--DE~H~~~~~~~~~~~~~~~~~~~~~~~~ 159 (200)
T d1wp9a1 83 IVALTGEKSPEERSKA-WARAKVIVATPQTIENDLLAGRISLEDVSLIVF--DEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (200)
T ss_dssp EEEECSCSCHHHHHHH-HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEE--ETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred eeeeecccchhHHHHh-hhcccccccccchhHHHHhhhhhhccccceEEE--EehhhhhcchhHHHHHHHHHhcCCCCcE
Confidence 8877777766654433 345789999999999999988888899999883 4433221 234567
Q ss_pred eecCCCh
Q psy18032 203 LLGGDSM 209 (333)
Q Consensus 203 l~~sAT~ 209 (333)
+++|||.
T Consensus 160 l~~SATp 166 (200)
T d1wp9a1 160 IGLTASP 166 (200)
T ss_dssp EEEESCS
T ss_pred EEEEecC
Confidence 7888886
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=9.9e-18 Score=144.76 Aligned_cols=153 Identities=16% Similarity=0.204 Sum_probs=121.4
Q ss_pred HHHHHHHHhCCCCCCcHHHHhHHHHHhcC------CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 46 FEVLKGVLKRGYKIPTPIQRKTIPLVLEG------RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 46 ~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g------~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
+...+..+.+.|+ +|+-|.+++..+.+. .+.+++|.||||||.+|+.+++..+.. |.++++++||..|
T Consensus 71 ~l~~~f~~~LPFe-LT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~-----g~q~~~m~Pt~~L 144 (264)
T d1gm5a3 71 KLAEEFIKSLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 144 (264)
T ss_dssp HHHHHHHHHSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHhhcccc-CCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhc-----ccceeEEeehHhh
Confidence 3344445677888 999999999998652 478999999999999999999999887 7899999999999
Q ss_pred HHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh---hC-CCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc
Q psy18032 120 ALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL---HA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF 195 (333)
Q Consensus 120 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~ 195 (333)
+.|.++.++++....++.+..++|+.+.++..+.+ .+ .++|+|||- .+....+.+++++++| +|+-.++
T Consensus 145 a~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGTh-----sl~~~~~~f~~Lglvi--iDEqH~f 217 (264)
T d1gm5a3 145 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH-----ALIQEDVHFKNLGLVI--IDEQHRF 217 (264)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT-----THHHHCCCCSCCCEEE--EESCCCC
T ss_pred hHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeeh-----HHhcCCCCccccceee--ecccccc
Confidence 99999999999888899999999998876654433 33 599999995 3344557788999999 4543222
Q ss_pred c----------ccceeeeecCCChHH
Q psy18032 196 T----------KLQSTCLLGGDSMDN 211 (333)
Q Consensus 196 ~----------~~~~~~l~~sAT~~~ 211 (333)
. ...+.++++|||-.+
T Consensus 218 gv~Qr~~l~~~~~~~~~l~~SATPip 243 (264)
T d1gm5a3 218 GVKQREALMNKGKMVDTLVMSATPIP 243 (264)
T ss_dssp -----CCCCSSSSCCCEEEEESSCCC
T ss_pred chhhHHHHHHhCcCCCEEEEECCCCH
Confidence 1 235778999999543
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=2.3e-16 Score=133.58 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=123.7
Q ss_pred CCCHHHHHHHHh-CCCCCCcHHHHhHHHHHhc----C--CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc
Q psy18032 43 GLGFEVLKGVLK-RGYKIPTPIQRKTIPLVLE----G--RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP 115 (333)
Q Consensus 43 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~----g--~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P 115 (333)
..+.+..+.+.+ +.|. +|+-|..++..+.+ + .+.+++|.||||||.+|+.++...+.. |.++++++|
T Consensus 39 ~~~~~~~~~~~~~lP~~-lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~-----g~qv~~l~P 112 (233)
T d2eyqa3 39 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN-----HKQVAVLVP 112 (233)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT-----TCEEEEECS
T ss_pred CCCHHHHHhhhhccccc-cchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHc-----CCceEEEcc
Confidence 345566666554 5777 89999999998765 2 478999999999999999999998876 789999999
Q ss_pred cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH---hhC-CCCEEEECchHHHHHHHhccccccCchhhHH----
Q psy18032 116 TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR---LHA-SPDIVVATPGRFLHIVVEMELKLSSIQYTFK---- 187 (333)
Q Consensus 116 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---l~~-~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~---- 187 (333)
|..|+.|.++.++++....++.+..++|..+..++... +.+ .++|+|||- .+....+.++++.++|+
T Consensus 113 t~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGth-----s~l~~~~~f~~LgLiIiDEeH 187 (233)
T d2eyqa3 113 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH-----KLLQSDVKFKDLGLLIVDEEH 187 (233)
T ss_dssp SHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECT-----HHHHSCCCCSSEEEEEEESGG
T ss_pred HHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeeh-----hhhccCCccccccceeeechh
Confidence 99999999999999888889999999999887665433 333 589999994 44445677899999995
Q ss_pred -----HHHHHhhccccceeeeecCCChHHHHH
Q psy18032 188 -----FVKELGKFTKLQSTCLLGGDSMDNQFA 214 (333)
Q Consensus 188 -----~i~~l~~~~~~~~~~l~~sAT~~~~v~ 214 (333)
..+.+. ....+..++++|||-.+..-
T Consensus 188 ~fg~kQ~~~l~-~~~~~~~~l~~SATPiprtl 218 (233)
T d2eyqa3 188 RFGVRHKERIK-AMRANVDILTLTATPIPRTL 218 (233)
T ss_dssp GSCHHHHHHHH-HHHTTSEEEEEESSCCCHHH
T ss_pred hhhhHHHHHHH-hhCCCCCEEEEecchhHHHH
Confidence 111121 22346788999999655443
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.38 E-value=5.2e-13 Score=116.86 Aligned_cols=118 Identities=19% Similarity=0.138 Sum_probs=86.6
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+++|.+++..+++.+..++.+|||+|||++....+...... ...++|||+|+++|+.|.++.+..++......+
T Consensus 113 ~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~----~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~ 188 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred ccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhc----ccceEEEEEcCchhHHHHHHHHHHhhccccccc
Confidence 4999999999999999999999999999998766544333232 245899999999999999999999876555566
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
..+.+|..... .......++|+|+..+..... -.++++.++|
T Consensus 189 ~~~~~g~~~~~---~~~~~~~i~i~t~qs~~~~~~---~~~~~f~~VI 230 (282)
T d1rifa_ 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQPK---EWFSQFGMMM 230 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSCG---GGGGGEEEEE
T ss_pred eeecceecccc---cccccceEEEEeeehhhhhcc---cccCCCCEEE
Confidence 66666654322 122357899999877654332 2345566666
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=1.8e-13 Score=113.56 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=72.2
Q ss_pred CceEEEEEecchhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccc
Q psy18032 228 GRFLHIVVEMELKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYV 288 (333)
Q Consensus 228 ~~i~~~~~~~~~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vL 288 (333)
+++.+.+.+...|...+ .+|||+|++.++.++..|. |+.+..+|| +.+.+++|++|++++|
T Consensus 5 pNi~y~v~~~~~k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~il 84 (200)
T d1oywa3 5 PNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIV 84 (200)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEE
T ss_pred CCcEEEEEcCCcHHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcccceEE
Confidence 45666666655554433 4899999999999999987 899999998 3356799999999999
Q ss_pred cccc--------CCcccccc-------cccEEEEccCC----CchhhHHHh
Q psy18032 289 QVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFLF 320 (333)
Q Consensus 289 vaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~l 320 (333)
|||| +++..||+ ..|+||+|||| .|.++.|+-
T Consensus 85 vaTd~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~ 135 (200)
T d1oywa3 85 VATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYD 135 (200)
T ss_dssp EECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEEC
T ss_pred EecchhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecC
Confidence 9999 56666664 55999999999 455555543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=2.4e-13 Score=109.75 Aligned_cols=94 Identities=15% Similarity=0.307 Sum_probs=72.2
Q ss_pred CCCceEEEEEecc---hhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCC
Q psy18032 226 TPGRFLHIVVEME---LKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPA 283 (333)
Q Consensus 226 t~~~i~~~~~~~~---~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g 283 (333)
|..++.|++...+ .|...+ .++||++++.|+.++..|. |+++..+|| +| +.+++|++|
T Consensus 4 tl~~i~q~~v~v~~~~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g 83 (168)
T d2j0sa2 4 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 83 (168)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEecChHHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC
Confidence 5678888886542 244443 4889999999999999996 899999998 23 566999999
Q ss_pred Ccccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 284 KKKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 284 ~~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
++++||||| +++..|++ ..|+||+|||| .|.++.|+
T Consensus 84 ~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~ 138 (168)
T d2j0sa2 84 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV 138 (168)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred CccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEE
Confidence 999999999 44555554 44999999999 35555444
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=4.1e-13 Score=107.73 Aligned_cols=75 Identities=13% Similarity=0.284 Sum_probs=60.8
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||+++..++.+++.|. |+++..+|| +.+.++.|++|+.++||||| ++++.||+ .
T Consensus 30 ~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~ 109 (162)
T d1fuka_ 30 AVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKE 109 (162)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGG
T ss_pred EEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhcccceeeccccccccccCCCceEEEEeccchhHH
Confidence 5899999999999999996 899999998 33456999999999999999 45555664 4
Q ss_pred ccEEEEccCC----CchhhHHH
Q psy18032 302 RDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 302 ~~~~~~grtG----~g~~~~~~ 319 (333)
.|+||+|||| .|.+..|+
T Consensus 110 ~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 110 NYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp GGGGSSCSCC-----CEEEEEE
T ss_pred HHHhhccccccCCCccEEEEEc
Confidence 5999999999 34445444
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=5.5e-13 Score=108.02 Aligned_cols=94 Identities=15% Similarity=0.234 Sum_probs=72.4
Q ss_pred CCCceEEEEEecc--hhhhhH-----------HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCC
Q psy18032 226 TPGRFLHIVVEME--LKLSSI-----------QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAK 284 (333)
Q Consensus 226 t~~~i~~~~~~~~--~k~~~l-----------~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~ 284 (333)
|...+.|++...+ .|...+ ++|||++++.++.++..|. |+.+..+|| +.+.+++|++|+
T Consensus 3 tl~~i~q~yi~v~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~ 82 (171)
T d1s2ma2 3 TLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 82 (171)
T ss_dssp BCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CccceEEEEEEcCHHHHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccCc
Confidence 5677888887653 233333 5899999999999999997 999999998 345679999999
Q ss_pred cccccccc--------CCcccccc-------cccEEEEccCC----CchhhHHH
Q psy18032 285 KKYVQVTD--------DTIPLVLE-------GRDVVAMARTG----SGKTACFL 319 (333)
Q Consensus 285 ~~vLvaTd--------~~i~~vi~-------~~~~~~~grtG----~g~~~~~~ 319 (333)
.++||||| ++++.|++ ..|+||+||+| .|++..|+
T Consensus 83 ~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v 136 (171)
T d1s2ma2 83 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI 136 (171)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred cccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEe
Confidence 99999999 44555554 45999999998 45554444
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.18 E-value=4.7e-13 Score=107.64 Aligned_cols=70 Identities=14% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc--------
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------- 300 (333)
.+|||++++.|+.++..|. |+++..+|| +| +.+++|++|+++|||||| +++..|++
T Consensus 34 ~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~Vi~~~~~~~~~ 113 (174)
T d1c4oa2 34 TLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGF 113 (174)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred EEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEEEEeccccccc
Confidence 6899999999999999997 999999999 33 567999999999999999 55556664
Q ss_pred ----cccEEEEccCC-Cch
Q psy18032 301 ----GRDVVAMARTG-SGK 314 (333)
Q Consensus 301 ----~~~~~~~grtG-~g~ 314 (333)
..|+||+||+| .|+
T Consensus 114 ~~~~~~~iq~~GR~gR~~~ 132 (174)
T d1c4oa2 114 LRSERSLIQTIGRAARNAR 132 (174)
T ss_dssp GGSHHHHHHHHGGGTTSTT
T ss_pred cchhHHHHHHhhhhhhcCC
Confidence 22899999999 443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.17 E-value=8.7e-12 Score=96.54 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=79.9
Q ss_pred HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 71 VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 71 i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
+.+|+++++++|||||||.+++.+++..... .+.++++++|+++++.|.++.+.. .+..+....+....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~----~~~~vli~~p~~~l~~q~~~~~~~----~~~~~~~~~~~~~~--- 72 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECAR----RRLRTLVLAPTRVVLSEMKEAFHG----LDVKFHTQAFSAHG--- 72 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTTT----SCEEEESSCCCCCC---
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhh----cCceeeeeecchhHHHHHHHHhhh----hhhhhccccccccc---
Confidence 3468999999999999999887777766655 367899999999999999887654 22222211111111
Q ss_pred HHHhhCCCCEEEECchHHHHHHHhccccccCchhhHHHHHHHhhc---------------cccceeeeecCCChH
Q psy18032 151 FARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTFKFVKELGKF---------------TKLQSTCLLGGDSMD 210 (333)
Q Consensus 151 ~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV~~i~~l~~~---------------~~~~~~~l~~sAT~~ 210 (333)
.....+.+.|...+.... .....+.+++++|+ ||.+.+ ...+.+++++|||.|
T Consensus 73 ----~~~~~~~~~~~~~l~~~~-~~~~~~~~~~lvIi--DEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATPp 140 (140)
T d1yksa1 73 ----SGREVIDAMCHATLTYRM-LEPTRVVNWEVIIM--DEAHFLDPASIAARGWAAHRARANESATILMTATPP 140 (140)
T ss_dssp ----CSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEE--TTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred ----ccccchhhhhHHHHHHHH-hccccccceeEEEE--ccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCCC
Confidence 113557777777665543 34456778888884 332211 124678888888864
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.17 E-value=4.1e-13 Score=109.41 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=61.9
Q ss_pred HHHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------
Q psy18032 244 IQLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE------- 300 (333)
Q Consensus 244 l~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~------- 300 (333)
..++||++++.++.++..|. |+++..+|| +.+.+++|++|+++|||||| ++++.||+
T Consensus 33 ~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~VI~~d~p~~~ 112 (181)
T d1t5la2 33 RTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEG 112 (181)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEEEETTTTSCS
T ss_pred eEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEEEEecCCccc
Confidence 36899999999999999996 999999999 33567999999999999999 55555664
Q ss_pred -----cccEEEEccCC-CchhhHHH
Q psy18032 301 -----GRDVVAMARTG-SGKTACFL 319 (333)
Q Consensus 301 -----~~~~~~~grtG-~g~~~~~~ 319 (333)
..|+||+|||| .|++..++
T Consensus 113 ~~~s~~~yi~R~GRagR~g~~~~~~ 137 (181)
T d1t5la2 113 FLRSERSLIQTIGRAARNANGHVIM 137 (181)
T ss_dssp GGGSHHHHHHHHGGGTTSTTCEEEE
T ss_pred ccccHHHHHHHHHhhccccCceeEe
Confidence 24789999999 56544433
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.13 E-value=5.7e-13 Score=103.63 Aligned_cols=74 Identities=22% Similarity=0.226 Sum_probs=60.9
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCccccccchHHHhhhCCCCcccccccc-------CCcccccc-----------cccE
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHKQRQSVRKWDPAKKKYVQVTD-------DTIPLVLE-----------GRDV 304 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~~r~~l~~f~~g~~~vLvaTd-------~~i~~vi~-----------~~~~ 304 (333)
.+|||+++++|+++++.|. |+++..+|+... +++|++|+.++||||| ++++.|++ ..|+
T Consensus 38 ~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~-~~~~~~~~~~vlvaTd~~~~GiD~~v~~Vi~~~~~~~~P~~~~~y~ 116 (138)
T d1jr6a_ 38 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLD-VSVIPTNGDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRT 116 (138)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTCEEEEECTTCC-SCCCTTSSCEEEEESSSSCSSSCCCBSEEEECSEETTEECCHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHhccccchhhhhccch-hhhhhhhhcceeehhHHHHhccccccceEEEEEecCCCCCCHHHHH
Confidence 5899999999999999997 999999998432 5779999999999999 36666664 2388
Q ss_pred EEEccCCCchhhHHH
Q psy18032 305 VAMARTGSGKTACFL 319 (333)
Q Consensus 305 ~~~grtG~g~~~~~~ 319 (333)
||+||||.|+...+.
T Consensus 117 qr~GR~gRg~~G~~~ 131 (138)
T d1jr6a_ 117 QRRGRTGRGKPGIYR 131 (138)
T ss_dssp HHHTTBCSSSCEEEE
T ss_pred hHhccccCCCCcEEE
Confidence 999999977666543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.10 E-value=2e-10 Score=95.52 Aligned_cols=94 Identities=22% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceE
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQS 138 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 138 (333)
.|+++|.+++..+++++..++.+|||+|||++++..+... +.++||++|+++|+.|..+.++.++. ..+
T Consensus 70 ~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~Liv~p~~~L~~q~~~~~~~~~~---~~~ 138 (206)
T d2fz4a1 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIFGE---EYV 138 (206)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGGCG---GGE
T ss_pred CcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHHh--------cCceeEEEcccchHHHHHHHHHhhcc---cch
Confidence 4899999999999999999999999999998776544321 34799999999999999999887543 233
Q ss_pred EEEECCcchHHHHHHhhCCCCEEEECchHHHHHH
Q psy18032 139 TCLLGGDSMDNQFARLHASPDIVVATPGRFLHIV 172 (333)
Q Consensus 139 ~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l 172 (333)
....|+.. ....++|+|...+....
T Consensus 139 ~~~~~~~~---------~~~~i~i~t~~~~~~~~ 163 (206)
T d2fz4a1 139 GEFSGRIK---------ELKPLTVSTYDSAYVNA 163 (206)
T ss_dssp EEESSSCB---------CCCSEEEEEHHHHHHTH
T ss_pred hhcccccc---------cccccccceehhhhhhh
Confidence 33444322 24579999988776543
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.09 E-value=4.3e-12 Score=100.97 Aligned_cols=67 Identities=25% Similarity=0.350 Sum_probs=57.3
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
.+|||++++.|+.++..|. |+.+..+|+ +.+.+++|++|+.++||||| ++++.|++ .
T Consensus 31 ~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~ 110 (155)
T d1hv8a2 31 GLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPE 110 (155)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHH
T ss_pred EEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcccceeeeehhHHhhhhhhccCcEEEEecCCCCHH
Confidence 5899999999999999997 899999998 34567999999999999998 45555554 4
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 111 ~y~qr~GR~g 120 (155)
T d1hv8a2 111 SYMHRIGRTG 120 (155)
T ss_dssp HHHHHSTTTC
T ss_pred HHHHHHHhcC
Confidence 4999999999
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=4.1e-12 Score=102.39 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=56.1
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc-------c
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE-------G 301 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~ 301 (333)
++|||++++.++.+++.|. |+++..+|| +++.+++|++|++++||||| +.++.|++ .
T Consensus 30 ~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~ 109 (168)
T d1t5ia_ 30 VVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 109 (168)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHH
T ss_pred EEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhhhhhcccchh
Confidence 5899999999999999997 999999998 34567999999999999998 33444443 3
Q ss_pred ccEEEEccCC
Q psy18032 302 RDVVAMARTG 311 (333)
Q Consensus 302 ~~~~~~grtG 311 (333)
.|+||+||+|
T Consensus 110 ~yiqr~GR~g 119 (168)
T d1t5ia_ 110 TYLHRVARAG 119 (168)
T ss_dssp HHHHHHHHHT
T ss_pred hHhhhhhhcc
Confidence 4999999998
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.96 E-value=2.6e-10 Score=88.16 Aligned_cols=92 Identities=18% Similarity=0.187 Sum_probs=62.2
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR 153 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 153 (333)
.+..++.+|||||||..+...+. . .+.+++|++|+++|++|..+.+..... .......++.....
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~----~----~~~~vli~~P~~~l~~q~~~~~~~~~~---~~~~~~~~~~~~~~---- 72 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYA----A----QGYKVLVLNPSVAATLGFGAYMSKAHG---VDPNIRTGVRTITT---- 72 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHH----T----TTCCEEEEESCHHHHHHHHHHHHHHHS---CCCEEECSSCEECC----
T ss_pred CCEEEEEeCCCCCHHHHHHHHHH----H----cCCcEEEEcChHHHHHHHHHHHHHHhh---cccccccccccccc----
Confidence 35689999999999975533322 1 366899999999999999999987532 23333444433222
Q ss_pred hhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 154 LHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 154 l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
...+.++|.+.+.... .-.++++.++|
T Consensus 73 ---~~~~~~~~~~~~~~~~---~~~~~~~~~vI 99 (136)
T d1a1va1 73 ---GSPITYSTYGKFLADG---GCSGGAYDIII 99 (136)
T ss_dssp ---CCSEEEEEHHHHHHTT---GGGGCCCSEEE
T ss_pred ---ccceEEEeeeeecccc---chhhhcCCEEE
Confidence 3568888887765432 23466777777
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.80 E-value=1.1e-10 Score=100.12 Aligned_cols=75 Identities=16% Similarity=0.117 Sum_probs=57.5
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc---c-------------hHHHhhhCCCCcccccccc--------CCccc-
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK---Q-------------RQSVRKWDPAKKKYVQVTD--------DTIPL- 297 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~---~-------------r~~l~~f~~g~~~vLvaTd--------~~i~~- 297 (333)
.+|||+++++|++++..|. |+++..+|+ + ++.+++|.+|+.+++|+|| .+++.
T Consensus 39 ~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~~giDid~V 118 (299)
T d1a1va2 39 HLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQTVDFSLDPT 118 (299)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEEEECCCSSS
T ss_pred EEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccCCCCCCCcc
Confidence 5899999999999999997 999999997 1 3456899999999999998 34443
Q ss_pred --ccc-------cccEEEEccCCCchhhHHH
Q psy18032 298 --VLE-------GRDVVAMARTGSGKTACFL 319 (333)
Q Consensus 298 --vi~-------~~~~~~~grtG~g~~~~~~ 319 (333)
|++ ..|+||+||||.|+...+.
T Consensus 119 ~~VI~~d~P~SvesyIQRiGRTGRGr~G~~~ 149 (299)
T d1a1va2 119 FTIETTTLPQDAVSRTQRRGRTGRGKPGIYR 149 (299)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCSSSCEEEE
T ss_pred eEEEeCCCCCCHHHHHhhccccCCCCCceEE
Confidence 432 4599999999977666443
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.64 E-value=3.9e-09 Score=90.03 Aligned_cols=68 Identities=9% Similarity=0.018 Sum_probs=55.0
Q ss_pred HHHhhcchhhHHHHHHHhcCCCcccccc------chHHHhhhCCCCccccccc----c--------CC-cccccc---cc
Q psy18032 245 QLSLTDFKQDTSRIALDLVGDSTEMIHK------QRQSVRKWDPAKKKYVQVT----D--------DT-IPLVLE---GR 302 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~g~~~~~lh~------~r~~l~~f~~g~~~vLvaT----d--------~~-i~~vi~---~~ 302 (333)
.+|||++++.|++++.+|.. .+|| +.+.+++|++|+++||||| | ++ +..||+ +.
T Consensus 28 ~iif~~~~~~~~~l~~~l~~----~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v~~VI~~d~P~ 103 (248)
T d1gkub2 28 GIIYARTGEEAEEIYESLKN----KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPS 103 (248)
T ss_dssp EEEEESSHHHHHHHHHTTTT----SSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCE
T ss_pred EEEEECCHHHHHHHHHHHHH----hccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhccCccccccEEEEeCCCc
Confidence 58999999999999999974 3787 4467899999999999999 5 33 666776 77
Q ss_pred cEEEEccCC-Cchhh
Q psy18032 303 DVVAMARTG-SGKTA 316 (333)
Q Consensus 303 ~~~~~grtG-~g~~~ 316 (333)
|+||+||+| .|+..
T Consensus 104 ~~~r~gR~~R~g~~~ 118 (248)
T d1gkub2 104 FRVTIEDIDSLSPQM 118 (248)
T ss_dssp EEEECSCGGGSCHHH
T ss_pred chhhhhhhhccCcce
Confidence 999999999 44443
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.51 E-value=2.4e-09 Score=93.34 Aligned_cols=67 Identities=19% Similarity=0.307 Sum_probs=56.6
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc--------------chHHHhhhCCCCcccccccc--------CCcccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK--------------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~--------------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~ 300 (333)
++|||++++.++.+++.|. |+++..+|| +++.+++|++|+++|||||| ++++.||+
T Consensus 164 ~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T~~~~~Gld~~~~~~Vi~ 243 (286)
T d1wp9a2 164 IIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF 243 (286)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE
T ss_pred EEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEccceeccccCCCCCEEEE
Confidence 5889999999999999996 888888876 23457999999999999999 56666665
Q ss_pred -------cccEEEEccCC
Q psy18032 301 -------GRDVVAMARTG 311 (333)
Q Consensus 301 -------~~~~~~~grtG 311 (333)
..|+||+||+|
T Consensus 244 ~d~~~~~~~~~Qr~GR~g 261 (286)
T d1wp9a2 244 YEPVPSAIRSIQRRGRTG 261 (286)
T ss_dssp SSCCHHHHHHHHHHTTSC
T ss_pred eCCCCCHHHHHHHHHhCC
Confidence 55999999998
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.12 E-value=2.1e-05 Score=65.86 Aligned_cols=110 Identities=21% Similarity=0.203 Sum_probs=91.5
Q ss_pred CCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 55 RGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 55 ~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.|.. |.++|.-.--.+..| -++.+.||=|||++..+|+.-.... |..+=|++..-.||..=.+++..+.+.+
T Consensus 77 lG~R-hyDVQLiGgi~L~~G--~iaem~TGEGKTL~a~l~a~l~al~-----g~~vhvvTvNdyLA~RDae~m~~iy~~l 148 (273)
T d1tf5a3 77 TGMF-PFKVQLMGGVALHDG--NIAEMKTGEGKTLTSTLPVYLNALT-----GKGVHVVTVNEYLASRDAEQMGKIFEFL 148 (273)
T ss_dssp HSCC-CCHHHHHHHHHHHTT--SEEECCTTSCHHHHHHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hceE-EehhHHHHHHHHHhh--hheeecCCCcchhHHHHHHHHHHhc-----CCCceEEecCccccchhhhHHhHHHHHc
Confidence 4665 899999888888877 4999999999999999998877666 5568899999999999999999999999
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHH-HHHHh
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFL-HIVVE 174 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll-~~l~~ 174 (333)
|++|.++..+.+..+....- .|+|+++|...+- +.++.
T Consensus 149 Glsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd 187 (273)
T d1tf5a3 149 GLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRD 187 (273)
T ss_dssp TCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHH
T ss_pred CCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcch
Confidence 99999998887766644333 5899999998775 55544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.11 E-value=1.5e-07 Score=77.15 Aligned_cols=59 Identities=10% Similarity=0.174 Sum_probs=40.3
Q ss_pred CCCcccccc------chHHHhhhCCCCcccccccc--------CCcccccc--------cccEEEEccCCCchhhHHHhh
Q psy18032 264 GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD--------DTIPLVLE--------GRDVVAMARTGSGKTACFLFY 321 (333)
Q Consensus 264 g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd--------~~i~~vi~--------~~~~~~~grtG~g~~~~~~lp 321 (333)
++++..+|| +.+.|++|++|+++|||||+ ++...++. +.++|..||+|.|..-+|++-
T Consensus 64 ~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l 143 (206)
T d1gm5a4 64 EFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFL 143 (206)
T ss_dssp --CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEEC
T ss_pred CCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEe
Confidence 778899999 34678999999999999999 44443332 534556899994444444443
Q ss_pred h
Q psy18032 322 F 322 (333)
Q Consensus 322 ~ 322 (333)
+
T Consensus 144 ~ 144 (206)
T d1gm5a4 144 V 144 (206)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.98 E-value=2.2e-07 Score=76.18 Aligned_cols=70 Identities=19% Similarity=0.272 Sum_probs=49.0
Q ss_pred HHHhhcchhhHHHHHHHhcC--------------------------------CCcccccc-----chHHH-hhhCCCCcc
Q psy18032 245 QLSLTDFKQDTSRIALDLVG--------------------------------DSTEMIHK-----QRQSV-RKWDPAKKK 286 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~g--------------------------------~~~~~lh~-----~r~~l-~~f~~g~~~ 286 (333)
++|||++++.|+.+|..|.. ..++.+|+ .|+.+ +.|++|.++
T Consensus 43 ~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g~i~ 122 (201)
T d2p6ra4 43 VLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIK 122 (201)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCC
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCCCce
Confidence 68899999999988866631 11455676 34444 889999999
Q ss_pred cccccc--------CCcccccc--------------cccEEEEccCC-Cch
Q psy18032 287 YVQVTD--------DTIPLVLE--------------GRDVVAMARTG-SGK 314 (333)
Q Consensus 287 vLvaTd--------~~i~~vi~--------------~~~~~~~grtG-~g~ 314 (333)
|||||+ +....||. ..|.|++||+| .|.
T Consensus 123 vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~ 173 (201)
T d2p6ra4 123 VVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 173 (201)
T ss_dssp EEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred EEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCC
Confidence 999998 23333332 34889999999 353
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=1.4e-07 Score=77.00 Aligned_cols=76 Identities=13% Similarity=0.189 Sum_probs=53.4
Q ss_pred HHHhhcchhhHHHHHHHhc----CCCcccccc------chHHHhhhCCCCcccccccc-----CCcc----cccc-----
Q psy18032 245 QLSLTDFKQDTSRIALDLV----GDSTEMIHK------QRQSVRKWDPAKKKYVQVTD-----DTIP----LVLE----- 300 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~----g~~~~~lh~------~r~~l~~f~~g~~~vLvaTd-----~~i~----~vi~----- 300 (333)
++++|+..++.+.+++.+. ++++.++|| +.+.|++|++|+++|||||+ -|+| .||+
T Consensus 34 vy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~iiI~~a~rf 113 (211)
T d2eyqa5 34 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 113 (211)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSS
T ss_pred EEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcEEEEecchhc
Confidence 4667777777777766553 889999999 34678999999999999998 3333 2333
Q ss_pred --cccEEEEccCCCchhhHHHh
Q psy18032 301 --GRDVVAMARTGSGKTACFLF 320 (333)
Q Consensus 301 --~~~~~~~grtG~g~~~~~~l 320 (333)
+...|-.||.|.|..-+|++
T Consensus 114 GLaQLhQLRGRVGR~~~~s~c~ 135 (211)
T d2eyqa5 114 GLAQLHQLRGRVGRSHHQAYAW 135 (211)
T ss_dssp CHHHHHHHHTTCCBTTBCEEEE
T ss_pred cccccccccceeeecCccceEE
Confidence 43445679999555444443
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=97.72 E-value=3.8e-05 Score=66.03 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=52.9
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhc
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGK 132 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 132 (333)
+++|-|++++.. ....++|.|+.|||||.+.+--+...+.... .+..+++++++|++++.++.+.+.++..
T Consensus 1 ~L~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~-~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcC-CChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 478999999965 2346999999999999876654444443321 1234799999999999999988887643
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.65 E-value=1.8e-06 Score=74.73 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=36.8
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc--chHHHhhhCCCCcccccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK--QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~--~r~~l~~f~~g~~~vLvaTd 292 (333)
.++||++..++++++..|. |.++..+|| ..+..++|++|+.++|||||
T Consensus 39 ~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 39 TAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESS
T ss_pred EEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 5899999999999999997 889999999 34556889999999999999
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.64 E-value=9.7e-07 Score=72.12 Aligned_cols=73 Identities=12% Similarity=0.187 Sum_probs=53.2
Q ss_pred HHHhhcchhhHHHHHHHhcCCCcccccc-----ch-HHHhhhCCCCcccccccc--------CCcccccc-------ccc
Q psy18032 245 QLSLTDFKQDTSRIALDLVGDSTEMIHK-----QR-QSVRKWDPAKKKYVQVTD--------DTIPLVLE-------GRD 303 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~g~~~~~lh~-----~r-~~l~~f~~g~~~vLvaTd--------~~i~~vi~-------~~~ 303 (333)
.+|||++...++.+++.|. +..+|| +| +.+++|++|+++|||+|+ +.+..++. ..+
T Consensus 96 ~lvf~~~~~~~~~l~~~l~---~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi~~~~~~s~~~~ 172 (200)
T d2fwra1 96 IIIFTRHNELVYRISKVFL---IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREY 172 (200)
T ss_dssp BCCBCSCHHHHHHHHHHTT---CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHH
T ss_pred EEEEeCcHHHHHHHHhhcC---cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEEEeCCCCCHHHH
Confidence 4789999999999987763 445777 33 456999999999999998 33444442 558
Q ss_pred EEEEccCC---CchhhHHHh
Q psy18032 304 VVAMARTG---SGKTACFLF 320 (333)
Q Consensus 304 ~~~~grtG---~g~~~~~~l 320 (333)
+|++||++ .||..++++
T Consensus 173 ~Q~iGR~~R~~~~k~~~~i~ 192 (200)
T d2fwra1 173 IQRLGRILRPSKGKKEAVLY 192 (200)
T ss_dssp HHHHHHSBCCCTTTCCEEEE
T ss_pred HHHHHhcCCCCCCCcEEEEE
Confidence 89888888 455555444
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.44 E-value=2.6e-05 Score=64.43 Aligned_cols=39 Identities=33% Similarity=0.502 Sum_probs=35.2
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
..||.++++.++...+.||+|||+||++|+++++++...
T Consensus 46 ~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~ 84 (222)
T d2j0sa1 46 RAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 84 (222)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHCCCCeEEEcCcchhhhhhhccccccccccccc
Confidence 468889999999999999999999999999999987554
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=97.37 E-value=0.00088 Score=57.35 Aligned_cols=111 Identities=16% Similarity=0.213 Sum_probs=68.6
Q ss_pred CCcHHHHhHHHHHh---------cCCcEEEECCCCcHHHHHHHHHHHHHhhhhc--ccCCceEEEEcccHHHHHHHHHHH
Q psy18032 59 IPTPIQRKTIPLVL---------EGRDVVAMARTGSGKTACFLIPMLEKLKTHA--ATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~---------~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~--~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.+.|+|.+++.-+. .+...|+.=..|.|||+..+--+...+.... ......+|||+|.. |..|-.+.+
T Consensus 55 ~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~Ei 133 (298)
T d1z3ix2 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNEV 133 (298)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhHHHHHHH
Confidence 57999999998653 2446888888999999754432222222221 11234699999985 778888888
Q ss_pred HHHhccCCceEEEEECCcchHHHHH--H-hhC-----CCCEEEECchHHHHH
Q psy18032 128 KELGKFTKLQSTCLLGGDSMDNQFA--R-LHA-----SPDIVVATPGRFLHI 171 (333)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~--~-l~~-----~~~IlI~TP~rll~~ 171 (333)
.++... ...+...+|+...+.... . ... ..+++++|.+.+...
T Consensus 134 ~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~ 184 (298)
T d1z3ix2 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH 184 (298)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH
T ss_pred HhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccc
Confidence 886542 345555666554322211 1 111 357888887766543
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.37 E-value=3.6e-05 Score=62.84 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=35.7
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
..+|.+++++++.-.++||+|||+||++|+++++++..+.
T Consensus 30 ~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~ 69 (207)
T d1t6na_ 30 ECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQ 69 (207)
T ss_dssp HHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHcCCCeEEEeccccccccccccceeeeecccCCC
Confidence 3578888999999999999999999999999999986654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=3.8e-05 Score=62.67 Aligned_cols=40 Identities=38% Similarity=0.715 Sum_probs=35.6
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFN 332 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~ 332 (333)
..||.++++.++...+.||+|||+||++|++++++.....
T Consensus 32 ~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~ 71 (206)
T d1veca_ 32 ESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDN 71 (206)
T ss_dssp HHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCS
T ss_pred HHHHHHHcCCCEEeeccCccccccccccchhhcccccccC
Confidence 4678889999999999999999999999999999876543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=97.33 E-value=0.00027 Score=60.96 Aligned_cols=70 Identities=19% Similarity=0.128 Sum_probs=53.2
Q ss_pred CCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 59 IPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.+++-|.+++.. .+..++|.|+.|||||.+.+--+...+.... ...-+++++++|+..+.++...+....
T Consensus 11 ~L~~eQ~~~v~~--~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~-~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC--CCCCEEEEecCCccHHHHHHHHHHHHHHcCC-CCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 478999999975 3457999999999999877655544444321 122379999999999999999988753
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=4.5e-05 Score=62.49 Aligned_cols=41 Identities=34% Similarity=0.459 Sum_probs=36.8
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
..+|.++++.++..++.||+|||++|++|+++++++..+.|
T Consensus 39 ~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~ 79 (212)
T d1qdea_ 39 RAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP 79 (212)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCc
Confidence 46788888999999999999999999999999999877654
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=97.31 E-value=0.00034 Score=57.63 Aligned_cols=101 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred CCcHHHHhHHHHHh----cCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHhccC
Q psy18032 59 IPTPIQRKTIPLVL----EGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELGKFT 134 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~----~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 134 (333)
.+.|+|.+++..+. .+..+++.-.+|.|||+..+..+...... ....++||++| ..+..|..+.+..+..
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~---~~~~~~LIv~p-~~l~~~W~~e~~~~~~-- 85 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---NELTPSLVICP-LSVLKNWEEELSKFAP-- 85 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---TCCSSEEEEEC-STTHHHHHHHHHHHCT--
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhc---ccccccceecc-hhhhhHHHHHHHhhcc--
Confidence 47899999997543 35568999999999999875444333332 12346899999 5566777888887643
Q ss_pred CceEEEEECCcchHHHHHHhhCCCCEEEECchHHHH
Q psy18032 135 KLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLH 170 (333)
Q Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~ 170 (333)
...+....+...... ..+.+++++|.+.+..
T Consensus 86 ~~~~~~~~~~~~~~~-----~~~~~vvi~~~~~~~~ 116 (230)
T d1z63a1 86 HLRFAVFHEDRSKIK-----LEDYDIILTTYAVLLR 116 (230)
T ss_dssp TSCEEECSSSTTSCC-----GGGSSEEEEEHHHHTT
T ss_pred cccceeeccccchhh-----ccCcCEEEeeHHHHHh
Confidence 333333222221111 1246899999877653
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=4.9e-05 Score=62.53 Aligned_cols=41 Identities=29% Similarity=0.408 Sum_probs=36.4
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNFNI 333 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~~~ 333 (333)
..+|.++.+.++...+.||+|||++|++|++++++++.+.|
T Consensus 41 ~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~ 81 (218)
T d2g9na1 41 RAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKAT 81 (218)
T ss_dssp HHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCc
Confidence 46788889999999999999999999999999998876543
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.0017 Score=57.13 Aligned_cols=72 Identities=21% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHH
Q psy18032 58 KIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKEL 130 (333)
Q Consensus 58 ~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 130 (333)
....+.|..|+..++.++-++++||+|||||.... .++..+.......+.++++.+||-.=+..+.+.+...
T Consensus 147 ~~~~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~-~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 147 SDEINWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp TTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHH-HHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred cccccHHHHHHHHHHcCCeEEEEcCCCCCceehHH-HHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 34577999999999999899999999999997542 2222222222234678999999999888877766553
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=96.86 E-value=0.00017 Score=60.02 Aligned_cols=37 Identities=46% Similarity=0.656 Sum_probs=33.6
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
..+|.+++++++.-.+.||+|||+||++|+|+++...
T Consensus 50 ~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~ 86 (238)
T d1wrba1 50 NAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQ 86 (238)
T ss_dssp HHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred HHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhc
Confidence 5688888999999999999999999999999998653
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.81 E-value=0.00019 Score=58.21 Aligned_cols=39 Identities=28% Similarity=0.473 Sum_probs=34.0
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGNF 331 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~~ 331 (333)
..+|.++++.++.-.+.||+|||+||++|++++++....
T Consensus 30 ~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~ 68 (209)
T d1q0ua_ 30 RIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERA 68 (209)
T ss_dssp HHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSC
T ss_pred HHHHHHHCCCCeEeecccccccceeeeeeeccccccccc
Confidence 457788888899999999999999999999999887543
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00034 Score=56.64 Aligned_cols=38 Identities=34% Similarity=0.622 Sum_probs=33.8
Q ss_pred CCcccccccccEEEEccCCCchhhHHHhhhhhhccCCC
Q psy18032 293 DTIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRGN 330 (333)
Q Consensus 293 ~~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~~ 330 (333)
..+|.+++++++...++||+|||++|++|+++++.+..
T Consensus 30 ~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~ 67 (206)
T d1s2ma1 30 EAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKL 67 (206)
T ss_dssp HHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHcCCCEEEecCCcchhhhhhcccccccccccc
Confidence 35788889999999999999999999999999987643
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=96.47 E-value=0.0025 Score=56.88 Aligned_cols=66 Identities=24% Similarity=0.408 Sum_probs=50.3
Q ss_pred CCCCcHHHHhHHHHHhcC-----CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 57 YKIPTPIQRKTIPLVLEG-----RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 57 ~~~~~~~Q~~~i~~i~~g-----~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
|. |+--|-++|..+.+| ++.++.|-||||||+... .++... +..+|||+|+..+|.|+++.++.+.
T Consensus 10 ~~-p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA-~l~~~~-------~rp~LVVt~n~~~A~qL~~dL~~~l 80 (413)
T d1t5la1 10 YE-PQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTIS-NVIAQV-------NKPTLVIAHNKTLAGQLYSELKEFF 80 (413)
T ss_dssp SC-CCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHH-HHHHHH-------TCCEEEECSSHHHHHHHHHHHHHHC
T ss_pred CC-CCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHH-HHHHHh-------CCCEEEEeCCHHHHHHHHHHHHHHc
Confidence 44 777888888877764 568999999999995432 222221 2359999999999999999999875
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.29 E-value=0.0058 Score=49.17 Aligned_cols=88 Identities=30% Similarity=0.376 Sum_probs=49.9
Q ss_pred CCc-EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 74 GRD-VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 74 g~d-~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
.++ ++++||||+|||....=-+.. +.. ++.++.+++. .|.=|.+|.+. +++..++.+.......+...-
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~-~~~----~g~kV~lit~Dt~R~gA~eQL~~---~a~~l~v~~~~~~~~~~~~~~ 80 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY-YKG----KGRRPLLVAADTQRPAAREQLRL---LGEKVGVPVLEVMDGESPESI 80 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH-HHH----TTCCEEEEECCSSCHHHHHHHHH---HHHHHTCCEEECCTTCCHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH-HHH----CCCcEEEEecccccchHHHHHHH---HHHhcCCccccccccchhhHH
Confidence 345 466999999999654432222 222 2345666654 45556555444 444567777766665554332
Q ss_pred ------HHHhhCCCCEEEECchHHH
Q psy18032 151 ------FARLHASPDIVVATPGRFL 169 (333)
Q Consensus 151 ------~~~l~~~~~IlI~TP~rll 169 (333)
.....+.-.|+|=||+|..
T Consensus 81 ~~~~~~~~~~~~~d~vlIDTaGr~~ 105 (207)
T d1ls1a2 81 RRRVEEKARLEARDLILVDTAGRLQ 105 (207)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCSS
T ss_pred HHHHHHHHhhccCcceeecccccch
Confidence 1223333457789998754
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0059 Score=49.19 Aligned_cols=85 Identities=14% Similarity=0.205 Sum_probs=49.3
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc--HHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHh
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT--RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARL 154 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt--~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l 154 (333)
++++||||+|||.+..=-+. ++.. ++.++.+++-- |.=|. ++++.+++..++.+.....+..........
T Consensus 12 i~lvGptGvGKTTTiAKLA~-~~~~----~g~kV~lit~Dt~R~gA~---eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~ 83 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLAR-QFEQ----QGKSVMLAAGDTFRAAAV---EQLQVWGQRNNIPVIAQHTGADSASVIFDA 83 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHH-HHHT----TTCCEEEECCCTTCHHHH---HHHHHHHHHTTCCEECCSTTCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH----CCCcEEEEecccccccch---hhhhhhhhhcCCcccccccCCCHHHHHHHH
Confidence 56799999999976553222 2222 23345555533 33334 445556666888887666666554433221
Q ss_pred -----hCCC-CEEEECchHHH
Q psy18032 155 -----HASP-DIVVATPGRFL 169 (333)
Q Consensus 155 -----~~~~-~IlI~TP~rll 169 (333)
.++. -|+|=||+|..
T Consensus 84 ~~~a~~~~~d~ilIDTaGr~~ 104 (211)
T d2qy9a2 84 IQAAKARNIDVLIADTAGRLQ 104 (211)
T ss_dssp HHHHHHTTCSEEEECCCCCGG
T ss_pred HHHHHHcCCCEEEeccCCCcc
Confidence 1233 47789999754
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.01 E-value=0.0066 Score=49.00 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=45.4
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc-cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHH----
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP-TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQF---- 151 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P-t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---- 151 (333)
++++||||+|||....=-+. ++.. .+..-+||-+- .|.=|.+| ++.+++.+++.+.....+.......
T Consensus 14 i~lvGptGvGKTTTiAKLAa-~~~~---~~~kV~lit~Dt~R~gA~eQ---L~~~a~~l~i~~~~~~~~~d~~~~~~~~~ 86 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAK-MFVD---EGKSVVLAAADTFRAAAIEQ---LKIWGERVGATVISHSEGADPAAVAFDAV 86 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHH-HHHH---TTCCEEEEEECTTCHHHHHH---HHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH-HHHH---CCCceEEEeecccccchhHH---HHHHhhhcCccccccCCCCcHHHHHHHHH
Confidence 67799999999976552222 2222 11223333333 34444444 5555556788776655554432211
Q ss_pred -HHhhCC-CCEEEECchHH
Q psy18032 152 -ARLHAS-PDIVVATPGRF 168 (333)
Q Consensus 152 -~~l~~~-~~IlI~TP~rl 168 (333)
....++ --|||=||+|.
T Consensus 87 ~~~~~~~~d~ilIDTaGr~ 105 (213)
T d1vmaa2 87 AHALARNKDVVIIDTAGRL 105 (213)
T ss_dssp HHHHHTTCSEEEEEECCCC
T ss_pred HHHHHcCCCEEEEeccccc
Confidence 111223 35779999864
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.84 E-value=0.0079 Score=48.44 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=41.7
Q ss_pred EEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHH-
Q psy18032 77 VVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFAR- 153 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 153 (333)
++++||||+|||.+..=-+ .++.. ++.++.+++- .|.=+.+ +++.+++..++.+...............
T Consensus 15 i~lvGptGvGKTTTiAKLA-~~~~~----~g~kV~lit~Dt~R~ga~e---QL~~~a~~l~v~~~~~~~~~~~~~~~~~a 86 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLA-YFYKK----KGFKVGLVGADVYRPAALE---QLQQLGQQIGVPVYGEPGEKDVVGIAKRG 86 (211)
T ss_dssp EEEECSCCC----HHHHHH-HHHHH----TTCCEEEEECCCSSHHHHH---HHHHHHHHHTCCEECCTTCCCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH----CCCceEEEEeeccccchhH---HHHHhccccCcceeecccchhhhHHHHHH
Confidence 5668999999996644222 22222 1334444443 2444444 4555555677777655555544322221
Q ss_pred -----hhCCCCEEEECchH
Q psy18032 154 -----LHASPDIVVATPGR 167 (333)
Q Consensus 154 -----l~~~~~IlI~TP~r 167 (333)
..+.-.|+|=||+|
T Consensus 87 ~~~~~~~~~d~IlIDTaGr 105 (211)
T d1j8yf2 87 VEKFLSEKMEIIIVDTAGR 105 (211)
T ss_dssp HHHHHHTTCSEEEEECCCS
T ss_pred HHHhhccCCceEEEecCCc
Confidence 22334577889987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.45 E-value=0.0097 Score=47.76 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=48.9
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcc--cHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSP--TRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFA 152 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~P--t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 152 (333)
+=++++||||+|||.+..=-+. ++.. .+.++.+++- .|.=+.+|.+.+-+ ..++.+.....+.+......
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~-~~~~----~g~kV~lit~Dt~R~gA~eQL~~~a~---~l~i~~~~~~~~~d~~~~~~ 78 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGR-YYQN----LGKKVMFCAGDTFRAAGGTQLSEWGK---RLSIPVIQGPEGTDPAALAY 78 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH-HHHT----TTCCEEEECCCCSSTTHHHHHHHHHH---HHTCCEECCCTTCCHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH-HHHH----CCCcEEEEEeccccccchhhHhhccc---ccCceEEeccCCccHHHHHH
Confidence 3467899999999976553222 2222 1334555543 35666666554444 46777665555544433322
Q ss_pred ------HhhCCCCEEEECchHHH
Q psy18032 153 ------RLHASPDIVVATPGRFL 169 (333)
Q Consensus 153 ------~l~~~~~IlI~TP~rll 169 (333)
...+.-.|+|=||+|..
T Consensus 79 ~~~~~~~~~~~d~ilIDTaGr~~ 101 (207)
T d1okkd2 79 DAVQAMKARGYDLLFVDTAGRLH 101 (207)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCT
T ss_pred HHHHHHHHCCCCEEEcCccccch
Confidence 12233457789999753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.15 E-value=0.011 Score=50.92 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=41.3
Q ss_pred HHHHhCCCCC---CcHHHHhHHHH-HhcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH
Q psy18032 50 KGVLKRGYKI---PTPIQRKTIPL-VLEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL 119 (333)
Q Consensus 50 ~~l~~~g~~~---~~~~Q~~~i~~-i~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L 119 (333)
..+.+.|+-. ..+-+...+.. +..++|++++|+||||||.. +-+++..+.. ..+.+.+--+.||
T Consensus 138 ~~l~~~g~~~~~~~~~~~~~~l~~~v~~~~nili~G~tgSGKTT~-l~al~~~i~~-----~~rivtiEd~~El 205 (323)
T d1g6oa_ 138 SFFEEQGFYNLLDNKEQAISAIKDGIAIGKNVIVCGGTGSGKTTY-IKSIMEFIPK-----EERIISIEDTEEI 205 (323)
T ss_dssp HHHHHTTTTTTCSSHHHHHHHHHHHHHHTCCEEEEESTTSSHHHH-HHHHGGGSCT-----TCCEEEEESSCCC
T ss_pred HHHHHHhhhcccccHHHHHHHHHHHHHhCCCEEEEeeccccchHH-HHHHhhhccc-----ccceeeccchhhh
Confidence 3455555433 33445555555 55688999999999999963 4445544432 4467788777776
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.028 Score=42.99 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=54.8
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
..++||.|.++.-+.++++.+.. .++.+..++|+.+..++...+.. ..+|||+| +.+.+ .+++.++
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~T-----dv~~r-GiDi~~v 96 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIST-----DLLAR-GIDVQQV 96 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEE-----GGGTT-TCCCCSC
T ss_pred CCcEEEEEEEEchHHHHHHHHhh----cCceEEEeccCCchhhHHHHHHHHhhcccceeecc-----ccccc-cccCCCc
Confidence 45799999999999999888876 57889999999887776655432 58999999 44443 4677777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 97 ~~VI 100 (162)
T d1fuka_ 97 SLVI 100 (162)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7777
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=95.05 E-value=0.036 Score=42.89 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
++.++||.|+|+.-+.++.+.+.. .|+++..++|+.+..++.+.+. + ..+|||+| +++.. .++..+
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~----~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT-----~v~~~-GiDip~ 99 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGI-----NLLRE-GLDIPE 99 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEES-----CCCCT-TCCCTT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHh----cCCceEEEecccchHHHHHHHHHHHCCCeEEEEee-----eeeee-eccCCC
Confidence 367899999999999999999987 5899999999998777665553 3 58999999 44444 367777
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
++++|
T Consensus 100 V~~Vi 104 (174)
T d1c4oa2 100 VSLVA 104 (174)
T ss_dssp EEEEE
T ss_pred CcEEE
Confidence 77777
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.40 E-value=0.066 Score=40.39 Aligned_cols=70 Identities=10% Similarity=0.201 Sum_probs=52.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.+++++-+.++++.++. .++.+..++|+.+..++...+.. ...|+|+| +.+..+ +++..+
T Consensus 28 ~~k~IIF~~s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T-----~~~~~G-id~~~v 97 (155)
T d1hv8a2 28 EFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-----DVMSRG-IDVNDL 97 (155)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-----TTHHHH-CCCSCC
T ss_pred CCCEEEEECchHHHHHHHhhhcc----cccccccccccchhhhhhhhhhhhhcccceeeeeh-----hHHhhh-hhhccC
Confidence 45799999999999998888887 57889999999877666555432 48999999 344433 556666
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 98 ~~Vi 101 (155)
T d1hv8a2 98 NCVI 101 (155)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6655
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=0.11 Score=41.16 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=25.6
Q ss_pred CcHHHHhHHHHHhc----CC---cEEEECCCCcHHHHHHHHHH
Q psy18032 60 PTPIQRKTIPLVLE----GR---DVVAMARTGSGKTACFLIPM 95 (333)
Q Consensus 60 ~~~~Q~~~i~~i~~----g~---d~l~~a~TGsGKT~~~~l~~ 95 (333)
.+|+|..++..+.+ ++ -+++.||.|+|||..+..-+
T Consensus 3 ~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a 45 (207)
T d1a5ta2 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (207)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHH
Confidence 45788777776543 33 38999999999997555433
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.08 E-value=0.01 Score=47.66 Aligned_cols=36 Identities=44% Similarity=0.611 Sum_probs=29.7
Q ss_pred Cccccccc-ccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 294 TIPLVLEG-RDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 294 ~i~~vi~~-~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.+|.++++ .++.-.++||+|||++|++|++++.+..
T Consensus 34 ~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~ 70 (208)
T d1hv8a1 34 VIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN 70 (208)
T ss_dssp HHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS
T ss_pred HHHHHHcCCCCeeeechhcccccceeecccccccccc
Confidence 35666765 4788889999999999999999988764
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=93.99 E-value=0.094 Score=40.74 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=55.9
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.+++|.++++.-+..+...++. .|+++..++|+.+..++.+.+.+ ..+|||+| +.+.+ .++..++
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~----~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaT-----dv~~r-GiDip~v 100 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKE----AGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI-----NLLRE-GLDIPEV 100 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEES-----CCCSS-SCCCTTE
T ss_pred CCeEEEEeehhhhhHHHHHHHHh----CCcceeEecCCccHHHHHHHHHHHHCCCCCEEEeh-----hHHHc-cCCCCCC
Confidence 56899999999999998888876 58999999999998777666543 59999999 44444 3677777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 101 ~~VI 104 (181)
T d1t5la2 101 SLVA 104 (181)
T ss_dssp EEEE
T ss_pred CEEE
Confidence 7777
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.064 Score=42.48 Aligned_cols=70 Identities=14% Similarity=0.150 Sum_probs=54.0
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh----CCCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH----ASPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~----~~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++|+.-+..+...++. .++.+..++|+.+..++.+.+. ...+|||+| +.+.. .+++.++
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaT-----d~~~~-GiD~p~v 99 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQS----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVAT-----VAFGM-GINKPNV 99 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-----TTSCT-TTCCTTC
T ss_pred CCCEEEEEeeehhhHHhhhhhcc----CCceeEEecCCCcHHHHHHHHHHHhcccceEEEec-----chhhh-ccCCCCC
Confidence 45799999999999999888876 5788999999988766554443 258999999 34333 4677778
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
+++|
T Consensus 100 ~~VI 103 (200)
T d1oywa3 100 RFVV 103 (200)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 7777
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.73 E-value=0.045 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=27.0
Q ss_pred cHHHHhHHHHHhcCCc--EEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 61 TPIQRKTIPLVLEGRD--VVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 61 ~~~Q~~~i~~i~~g~d--~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
.+.|.+.+..++.... ++++||||||||... ..++..+..
T Consensus 143 ~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl-~~~l~~~~~ 184 (401)
T d1p9ra_ 143 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNS 184 (401)
T ss_dssp CHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCC
T ss_pred cHHHHHHHHHHHhhhhceEEEEcCCCCCccHHH-HHHhhhhcC
Confidence 3556666666666554 999999999999543 345555543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=93.49 E-value=0.037 Score=48.28 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=15.7
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.|+|.+||||+|||..+-
T Consensus 69 ~niLfiGPTGvGKTElAk 86 (364)
T d1um8a_ 69 SNILLIGPTGSGKTLMAQ 86 (364)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred cceeeeCCCCccHHHHHH
Confidence 579999999999997663
|
| >d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=93.38 E-value=0.079 Score=46.82 Aligned_cols=65 Identities=34% Similarity=0.372 Sum_probs=46.0
Q ss_pred CCcHHHHhHHHHHhc----CC-cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHHHh
Q psy18032 59 IPTPIQRKTIPLVLE----GR-DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKELG 131 (333)
Q Consensus 59 ~~~~~Q~~~i~~i~~----g~-d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 131 (333)
.|+.-|-++|..+.+ |+ ...+.|-+||+|++ +++.+..-. +..+|||+|+...|.+.++.++.+.
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~--~~A~l~~~~------~rp~LvVt~~~~~A~~l~~dL~~~l 77 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTV--TMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELF 77 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHH--HHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHH--HHHHHHHHh------CCCEEEEeCCHHHHHHHHHHHHHhc
Confidence 344567667776544 44 47889999999985 333332211 2258999999999999999999875
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.091 Score=40.24 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=55.6
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.++++.-+....+.++. .++.+..++|+.+.+++...+.. ..+|||+| +.+.+ .+++.++
T Consensus 34 ~~k~iiF~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-----d~~~r-GiDi~~v 103 (168)
T d2j0sa2 34 ITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVWAR-GLDVPQV 103 (168)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGGSS-SCCCTTE
T ss_pred CCceEEEeeeHHHHHHHHHHhhh----cccchhhhhhhhhHHHHHHHHHHHhcCCccEEecc-----chhcc-cccccCc
Confidence 45899999999999999888887 57888999999988776555432 48999999 55544 4778888
Q ss_pred hhhHH
Q psy18032 183 QYTFK 187 (333)
Q Consensus 183 ~~lV~ 187 (333)
.++|.
T Consensus 104 ~~VIn 108 (168)
T d2j0sa2 104 SLIIN 108 (168)
T ss_dssp EEEEE
T ss_pred ceEEE
Confidence 88773
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.095 Score=41.63 Aligned_cols=73 Identities=12% Similarity=0.083 Sum_probs=55.8
Q ss_pred CCceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhh---C-CCCEEEECchHHHHHHHhccccccC
Q psy18032 106 SGVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLH---A-SPDIVVATPGRFLHIVVEMELKLSS 181 (333)
Q Consensus 106 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~---~-~~~IlI~TP~rll~~l~~~~~~~~~ 181 (333)
++.|+.||+|..+-+...++.++++ ..+.++..++|..+.++..+.+. + ..+|||+|. .++. .++..+
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt-----vIEv-GiDvpn 101 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIET-GIDIPT 101 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTGG-GSCCTT
T ss_pred cCCeEEEEEcCccchhhHHHHHHHh--CCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh-----hhhh-ccCCCC
Confidence 4889999999999999999988885 46889999999998777655543 2 599999994 3333 356666
Q ss_pred chhhH
Q psy18032 182 IQYTF 186 (333)
Q Consensus 182 l~~lV 186 (333)
..++|
T Consensus 102 A~~ii 106 (211)
T d2eyqa5 102 ANTII 106 (211)
T ss_dssp EEEEE
T ss_pred CcEEE
Confidence 66555
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.90 E-value=0.02 Score=51.40 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.3
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.+|+|+.||||+|||+.+-
T Consensus 49 ksNILliGPTGvGKTlLAr 67 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIAR 67 (443)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred cccEEEECCCCCCHHHHHH
Confidence 4699999999999997554
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.88 E-value=0.24 Score=37.74 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=51.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.|+++.-+..+.+.+.. .+.++..++|+.+..++...+.. ..+|||+|. .+. ..+++..+
T Consensus 27 ~~k~iIF~~~~~~~~~l~~~L~~----~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~-----~~~-~Gid~~~~ 96 (168)
T d1t5ia_ 27 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG-RGMDIERV 96 (168)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CCS-TTCCGGGC
T ss_pred CCeEEEEEeeeecchhhhhhhcc----ccccccccccccchhhhhhhhhhhccccceeeeccc-----ccc-chhhcccc
Confidence 44799999999999988888876 57889999999888776655432 489999993 332 33555566
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 97 ~~vi 100 (168)
T d1t5ia_ 97 NIAF 100 (168)
T ss_dssp SEEE
T ss_pred hhhh
Confidence 5555
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=92.85 E-value=0.011 Score=47.07 Aligned_cols=33 Identities=33% Similarity=0.571 Sum_probs=27.1
Q ss_pred cccccccccEEEEccCCCchhhHHHhhhhhhcc
Q psy18032 295 IPLVLEGRDVVAMARTGSGKTACFLFYFFFRFD 327 (333)
Q Consensus 295 i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~ 327 (333)
++.++++.++.-+..||+|||++|.+|++.+..
T Consensus 34 i~~~l~g~~vlv~apTGsGKT~~~~~~~~~~~~ 66 (206)
T d1oywa2 34 IDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG 66 (206)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHcCCCEEEEcCCCCCCcchhhhhhhhccC
Confidence 455666778888899999999999999987654
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.72 E-value=0.03 Score=47.65 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.4
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.++++++||||+|||+.+-
T Consensus 49 ~~~iLl~GPpG~GKT~lAk 67 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIAR 67 (309)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997554
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.28 Score=37.36 Aligned_cols=70 Identities=7% Similarity=0.064 Sum_probs=53.2
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhC----CCCEEEECchHHHHHHHhccccccCc
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHA----SPDIVVATPGRFLHIVVEMELKLSSI 182 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~----~~~IlI~TP~rll~~l~~~~~~~~~l 182 (333)
+.++||.|+++.-+..+++.+.. .++.+..++|+.+..++...+.+ ..+|+|+|. .+ ...+++.++
T Consensus 32 ~~k~iVF~~~~~~~~~l~~~L~~----~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td-----~~-~~Gid~~~v 101 (171)
T d1s2ma2 32 INQAIIFCNSTNRVELLAKKITD----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQAV 101 (171)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTTE
T ss_pred CCceEEEEeeeehhhHhHHhhhc----ccccccccccccchhhhhhhhhhcccCccccccchh-----Hh-hhcccccee
Confidence 45899999999999999888887 37888999999887766555432 589999995 22 334667777
Q ss_pred hhhH
Q psy18032 183 QYTF 186 (333)
Q Consensus 183 ~~lV 186 (333)
.++|
T Consensus 102 ~~VI 105 (171)
T d1s2ma2 102 NVVI 105 (171)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6666
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.26 E-value=0.064 Score=47.50 Aligned_cols=45 Identities=24% Similarity=0.353 Sum_probs=31.8
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELAL 121 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~ 121 (333)
...+++++.|+||||||......+.+.+.. +..++|+=|.-++..
T Consensus 48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~~~-----g~~~iiiD~kge~~~ 92 (433)
T d1e9ra_ 48 AEPRHLLVNGATGTGKSVLLRELAYTGLLR-----GDRMVIVDPNGDMLS 92 (433)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHT-----TCEEEEEEETTHHHH
T ss_pred cccceEEEEeCCCCcHHHHHHHHHHHHHhC-----CCCEEEEeCChhHHH
Confidence 445789999999999997643333333333 567888889887643
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.14 E-value=0.022 Score=47.18 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=34.0
Q ss_pred cCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
....+|+|.+-.+...+.+.+. -+..|...|..- +...+.+++.||+|+|||...-
T Consensus 6 ~~~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g---~~~~~~iLL~GppGtGKT~la~ 63 (256)
T d1lv7a_ 6 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLAK 63 (256)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcC---CCCCCeEEeeCCCCCCccHHHH
Confidence 4567899999888777776542 122222222211 1123679999999999996543
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.083 Score=42.63 Aligned_cols=43 Identities=9% Similarity=0.009 Sum_probs=28.5
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhc----CCcEEEECCCCcHHHHHHH
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLE----GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----g~d~l~~a~TGsGKT~~~~ 92 (333)
+|+|+--.+++.+.|+.. +..... -.++|+.||+|+|||..+-
T Consensus 7 ~~ddivGq~~~~~~L~~~------------i~~~~~~~~~~~~~Ll~GPpG~GKTtla~ 53 (239)
T d1ixsb2 7 TLDEYIGQERLKQKLRVY------------LEAAKARKEPLEHLLLFGPPGLGKTTLAH 53 (239)
T ss_dssp SGGGSCSCHHHHHHHHHH------------HHHHTTSSSCCCCEEEECCTTSCHHHHHH
T ss_pred CHHHhCCHHHHHHHHHHH------------HHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 688876667776666442 111111 2479999999999996554
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.089 Score=39.94 Aligned_cols=26 Identities=35% Similarity=0.447 Sum_probs=19.1
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHhhh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKLKT 101 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l~~ 101 (333)
|++++.||+|+|||. .+-.++..+..
T Consensus 2 k~v~ItG~~GtGKTt-l~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTT-LIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHH-HHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHH-HHHHHHHHHHH
Confidence 789999999999997 33344455544
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.48 E-value=0.48 Score=37.98 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.5
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC---CcEEEECCCCcHHHHHHHHHHHHHh
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG---RDVVAMARTGSGKTACFLIPMLEKL 99 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l~~l~~l 99 (333)
.+|+++-.++++.+.|+.. +.++ ..+|+.||+|+|||..+.+ +...+
T Consensus 9 ~~~~dlig~~~~~~~L~~~---------------i~~~~~~~~~Ll~Gp~G~GKtt~a~~-~~~~l 58 (239)
T d1njfa_ 9 QTFADVVGQEHVLTALANG---------------LSLGRIHHAYLFSGTRGVGKTSIARL-LAKGL 58 (239)
T ss_dssp SSGGGSCSCHHHHHHHHHH---------------HHTTCCCSEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CCHHHccChHHHHHHHHHH---------------HHcCCCCeeEEEECCCCCcHHHHHHH-HHHHh
Confidence 4889988888888777542 1222 2489999999999976553 33444
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.42 E-value=0.12 Score=41.83 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=31.6
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
.+|+++-.++++.+.|+.+- ... ....++++.||+|+|||....
T Consensus 8 ~~~~diig~~~~~~~L~~~~-~~~-----------~~~~~lll~Gp~G~GKTt~~~ 51 (252)
T d1sxje2 8 KSLNALSHNEELTNFLKSLS-DQP-----------RDLPHLLLYGPNGTGKKTRCM 51 (252)
T ss_dssp CSGGGCCSCHHHHHHHHTTT-TCT-----------TCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHHH-HcC-----------CCCCeEEEECCCCCCHHHHHH
Confidence 36999999999999887641 110 012259999999999997554
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.33 E-value=0.14 Score=41.18 Aligned_cols=45 Identities=22% Similarity=0.213 Sum_probs=29.7
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC---CcEEEECCCCcHHHHHHHH
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG---RDVVAMARTGSGKTACFLI 93 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l 93 (333)
+|+++--.+++.+.|+.. ++ .....+ .++|+.||+|+|||..+-+
T Consensus 7 ~~~divGqe~~~~~l~~~-------i~----~~~~~~~~~~~~L~~GPpGtGKT~lA~~ 54 (238)
T d1in4a2 7 SLDEFIGQENVKKKLSLA-------LE----AAKMRGEVLDHVLLAGPPGLGKTTLAHI 54 (238)
T ss_dssp SGGGCCSCHHHHHHHHHH-------HH----HHHHHTCCCCCEEEESSTTSSHHHHHHH
T ss_pred cHHHcCChHHHHHHHHHH-------HH----HHHhcCCCCCeEEEECCCCCcHHHHHHH
Confidence 688888778877766532 00 011112 4799999999999975543
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.12 Score=41.89 Aligned_cols=59 Identities=12% Similarity=0.003 Sum_probs=34.4
Q ss_pred cccccCCCcccccCCCHHHHHHHHhC--CCCCCcHHHHhHHHH-----HhcCCcEEEECCCCcHHHHHHH
Q psy18032 30 DKKKKMGGGFQSFGLGFEVLKGVLKR--GYKIPTPIQRKTIPL-----VLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 30 ~~~~~~~~~f~~~~l~~~l~~~l~~~--g~~~~~~~Q~~~i~~-----i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
..+..|. +|+++-.++...+.|++. .|.. .....++. ......+++.||+|+|||.+.-
T Consensus 5 ~eky~P~-~~~dlig~~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~ 70 (253)
T d1sxja2 5 TVKYAPT-NLQQVCGNKGSVMKLKNWLANWEN---SKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 70 (253)
T ss_dssp HHHTCCS-SGGGCCSCHHHHHHHHHHHHTHHH---HHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred ccCcCCC-CHHHhcCCHHHHHHHHHHHHhhhh---cchhhhhhhcccCCCCCceEEEECCCCCCHHHHHH
Confidence 3344444 799999999988877662 1110 00000000 0112469999999999996444
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.45 E-value=0.057 Score=44.31 Aligned_cols=55 Identities=13% Similarity=-0.029 Sum_probs=32.7
Q ss_pred cCCCcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHH--hcCCcEEEECCCCcHHHHHH
Q psy18032 34 KMGGGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLV--LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 34 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i--~~g~d~l~~a~TGsGKT~~~ 91 (333)
.|.-+|++++-.+...+.|.+. -.+ ..+.+.+... ...+.+|+.||+|+|||...
T Consensus 3 ~p~~~~~di~G~~~~k~~l~~~--i~~-l~~~~~~~~~g~~~~~giLl~GppGtGKT~la 59 (247)
T d1ixza_ 3 APKVTFKDVAGAEEAKEELKEI--VEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 59 (247)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHH--HHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCcHHHHccHHHHHHHHHHH--HHH-HHCHHHHHHcCCCCCceEEEecCCCCChhHHH
Confidence 3557899998777777666542 001 0011112221 11256999999999999644
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.28 E-value=0.04 Score=44.74 Aligned_cols=36 Identities=31% Similarity=0.258 Sum_probs=29.4
Q ss_pred CcccccccccEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 294 TIPLVLEGRDVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 294 ~i~~vi~~~~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
.++.++.++++.-++.||+|||.++++|++....++
T Consensus 51 ~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~ 86 (237)
T d1gkub1 51 WAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKG 86 (237)
T ss_dssp HHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTS
T ss_pred HHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhc
Confidence 356667777888889999999999999998876654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.05 E-value=0.15 Score=40.80 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=29.4
Q ss_pred cccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcCCcEEEECCCCcHHHHHHH
Q psy18032 38 GFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEGRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 38 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g~d~l~~a~TGsGKT~~~~ 92 (333)
+|+|+=.++.+.+.|... ++.. +-.++++.||+|+|||.+.-
T Consensus 22 ~~~diig~~~~~~~l~~~-------i~~~------~~~~lll~Gp~G~GKTtla~ 63 (231)
T d1iqpa2 22 RLDDIVGQEHIVKRLKHY-------VKTG------SMPHLLFAGPPGVGKTTAAL 63 (231)
T ss_dssp STTTCCSCHHHHHHHHHH-------HHHT------CCCEEEEESCTTSSHHHHHH
T ss_pred CHHHccCcHHHHHHHHHH-------HHcC------CCCeEEEECCCCCcHHHHHH
Confidence 788888788877776653 0100 12369999999999996554
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=89.85 E-value=0.24 Score=41.52 Aligned_cols=69 Identities=13% Similarity=0.039 Sum_probs=46.4
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
+++++|++|+..-++++.+.+++ .|.+|..++|.....++........+|||+|. ..+.+ +.+ ++.++|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~----~g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~-----~~~~~-~~~-~~~~vi 104 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IAEMG-ANL-CVERVL 104 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCSSSCC--------CCCSEEEESS-----STTCC-TTC-CCSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCeEEEEcCcCcHhHHhhhhcCCcCEEEEec-----hhhhc-eec-CceEEE
Confidence 56899999999999999999987 46678888988877666554445689999994 43333 334 355555
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.32 E-value=0.23 Score=39.36 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=28.8
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~ 92 (333)
.+|+|+=.++++.+.|++. +.++ .++++.||+|+|||....
T Consensus 11 ~~~~divg~~~~~~~L~~~---------------i~~~~~~~lLl~Gp~G~GKttl~~ 53 (227)
T d1sxjc2 11 ETLDEVYGQNEVITTVRKF---------------VDEGKLPHLLFYGPPGTGKTSTIV 53 (227)
T ss_dssp SSGGGCCSCHHHHHHHHHH---------------HHTTCCCCEEEECSSSSSHHHHHH
T ss_pred CCHHHccCcHHHHHHHHHH---------------HHcCCCCeEEEECCCCCChhHHHH
Confidence 4788887778777776553 1122 259999999999996444
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.27 E-value=0.066 Score=43.63 Aligned_cols=48 Identities=13% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHhhcchhhHHHHHHHhc---CCCcccccc-----ch-HHHhhhCCC-Ccccccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV---GDSTEMIHK-----QR-QSVRKWDPA-KKKYVQVTD 292 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~---g~~~~~lh~-----~r-~~l~~f~~g-~~~vLvaTd 292 (333)
++|||+++...+.+...+. |.++..+|| +| +.+++|.++ ...++++|.
T Consensus 88 viIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~ 145 (244)
T d1z5za1 88 IAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 145 (244)
T ss_dssp EEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred eEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhccccc
Confidence 3679999998888877663 788888998 34 456999766 578887764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.16 E-value=0.1 Score=42.43 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=17.6
Q ss_pred CcEEEECCCCcHHHHHHHHHHHHHh
Q psy18032 75 RDVVAMARTGSGKTACFLIPMLEKL 99 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~l~~l~~l 99 (333)
.++++.||+|+|||.+.-. +...+
T Consensus 44 ~~lll~GppGtGKT~l~~~-l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRK-LWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHH
T ss_pred CceEEECCCCCCHHHHHHH-HHHHH
Confidence 5799999999999965432 44444
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.12 E-value=0.21 Score=39.62 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=28.1
Q ss_pred CcccccCCCHHHHHHHHhCCCCCCcHHHHhHHHHHhcC--CcEEEECCCCcHHHHHHHHH
Q psy18032 37 GGFQSFGLGFEVLKGVLKRGYKIPTPIQRKTIPLVLEG--RDVVAMARTGSGKTACFLIP 94 (333)
Q Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~g--~d~l~~a~TGsGKT~~~~l~ 94 (333)
.+|+|+=.++++.+.|++. +.++ .++++.||+|+|||.++-+-
T Consensus 12 ~~~~d~ig~~~~~~~L~~~---------------~~~~~~~~~ll~Gp~G~GKTt~a~~l 56 (224)
T d1sxjb2 12 QVLSDIVGNKETIDRLQQI---------------AKDGNMPHMIISGMPGIGKTTSVHCL 56 (224)
T ss_dssp SSGGGCCSCTHHHHHHHHH---------------HHSCCCCCEEEECSTTSSHHHHHHHH
T ss_pred CCHHHhcCCHHHHHHHHHH---------------HHcCCCCeEEEECCCCCCchhhHHHH
Confidence 3677776666666655432 1222 25999999999999765543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=89.09 E-value=0.11 Score=38.49 Aligned_cols=19 Identities=21% Similarity=0.344 Sum_probs=16.1
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
.+++++.||+|||||..+-
T Consensus 2 ~k~I~l~G~~GsGKSTvak 20 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKSTIGR 20 (169)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4789999999999997554
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.04 E-value=0.21 Score=36.73 Aligned_cols=66 Identities=14% Similarity=0.123 Sum_probs=49.7
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhccCCceEEEEECCcchHHHHHHhhCCCCEEEECchHHHHHHHhccccccCchhhH
Q psy18032 107 GVRALILSPTRELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQFARLHASPDIVVATPGRFLHIVVEMELKLSSIQYTF 186 (333)
Q Consensus 107 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~IlI~TP~rll~~l~~~~~~~~~l~~lV 186 (333)
+.++||.|+|+.-|.++++.++. .|+.+..++++...++.. ....++||+| +.+..+ ++ .+++++|
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~----~G~~~~~~H~~~~~~~~~---~~~~~vlvaT-----d~~~~G-iD-~~v~~Vi 100 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVA----LGINAVAYYRGLDVSVIP---TNGDVVVVAT-----DALMTG-FT-GDFDSVI 100 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHH----HTCEEEEECTTCCSCCCT---TSSCEEEEES-----SSSCSS-SC-CCBSEEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHhc----cccchhhhhccchhhhhh---hhhcceeehh-----HHHHhc-cc-cccceEE
Confidence 55899999999999999999987 478899999988755431 2458999999 555555 44 4555554
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.66 E-value=0.92 Score=35.27 Aligned_cols=79 Identities=13% Similarity=0.062 Sum_probs=44.7
Q ss_pred HHhHHHHHhcC---CcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHH--HHHHHHHHHHHhcc----C
Q psy18032 64 QRKTIPLVLEG---RDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTREL--ALQTFKFVKELGKF----T 134 (333)
Q Consensus 64 Q~~~i~~i~~g---~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L--~~q~~~~~~~~~~~----~ 134 (333)
|.+.+..+.+. .++++.||.|+|||..+..-+ ..+.. ...+.+-.+++.|...- +.|+.+ +..+... .
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~-~~i~~-~~~~h~D~~~i~~~~~~I~Id~IR~-i~~~~~~~~~~~ 78 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELP-EYVEK-FPPKASDVLEIDPEGENIGIDDIRT-IKDFLNYSPELY 78 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH-HHHHT-SCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTSCCSSS
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHH-HHHhc-cccCCCCEEEEeCCcCCCCHHHHHH-HHHHHhhCcccC
Confidence 56667776653 469999999999996555332 33332 22345678888885321 333333 3333222 2
Q ss_pred CceEEEEECCc
Q psy18032 135 KLQSTCLLGGD 145 (333)
Q Consensus 135 ~~~~~~~~g~~ 145 (333)
+.+++.+..-.
T Consensus 79 ~~KviIId~ad 89 (198)
T d2gnoa2 79 TRKYVIVHDCE 89 (198)
T ss_dssp SSEEEEETTGG
T ss_pred CCEEEEEeCcc
Confidence 34666665443
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.40 E-value=0.044 Score=45.29 Aligned_cols=16 Identities=31% Similarity=0.545 Sum_probs=14.4
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
+.+|+.||+|+|||..
T Consensus 39 ~giLL~GppGtGKT~l 54 (258)
T d1e32a2 39 RGILLYGPPGTGKTLI 54 (258)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred ceeEEecCCCCCchHH
Confidence 6799999999999974
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=88.29 E-value=0.1 Score=39.36 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=15.4
Q ss_pred CCcEEEECCCCcHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACF 91 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~ 91 (333)
+.++++.||+|||||...
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 567999999999999744
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=87.42 E-value=0.031 Score=43.21 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=36.3
Q ss_pred HHHhhcchhhHHHHHHHhc--CCCcccccc----chHHHhhhCCCCcccccccc
Q psy18032 245 QLSLTDFKQDTSRIALDLV--GDSTEMIHK----QRQSVRKWDPAKKKYVQVTD 292 (333)
Q Consensus 245 ~lif~~~~~~~~~l~~~L~--g~~~~~lh~----~r~~l~~f~~g~~~vLvaTd 292 (333)
++|++.+.+.++.++..|. |++..++++ ++..+-...-..-.|.|||+
T Consensus 37 VLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~g~VtIATN 90 (175)
T d1tf5a4 37 VLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKGAVTIATN 90 (175)
T ss_dssp EEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTTCEEEEET
T ss_pred EEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccCCCceeehhh
Confidence 5889999999999999996 888888887 22333333334557999998
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=87.02 E-value=0.13 Score=37.92 Aligned_cols=15 Identities=27% Similarity=0.529 Sum_probs=12.7
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
++++|++|||||..+
T Consensus 5 Iii~G~pGsGKTTla 19 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWA 19 (152)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999743
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=86.69 E-value=0.31 Score=38.94 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=29.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
|.-+++.|++|+|||...+--+.+.+.. +..+++++-.. -..++.+.+..
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~~~-----~~~~~~is~e~-~~~~~~~~~~~ 75 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENACAN-----KERAILFAYEE-SRAQLLRNAYS 75 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT-----TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh-----ccccceeeccC-CHHHHHHHHHH
Confidence 4569999999999997554434443322 55677776432 23444444443
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=86.60 E-value=0.15 Score=41.50 Aligned_cols=16 Identities=31% Similarity=0.345 Sum_probs=14.0
Q ss_pred cEEEECCCCcHHHHHH
Q psy18032 76 DVVAMARTGSGKTACF 91 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~ 91 (333)
.+++.||+|+|||..+
T Consensus 34 ~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999754
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=86.23 E-value=0.15 Score=38.20 Aligned_cols=18 Identities=22% Similarity=0.270 Sum_probs=14.7
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
.+++++||+|||||....
T Consensus 5 ~~I~i~G~pGsGKTTia~ 22 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGK 22 (173)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 478999999999996443
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.20 E-value=0.25 Score=39.36 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=14.1
Q ss_pred cEEEECCCCcHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFL 92 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~ 92 (333)
++++.||+|+|||...-
T Consensus 35 ~lll~Gp~G~GKTtl~~ 51 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTIL 51 (237)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCChHHHHH
Confidence 58999999999996443
|
| >d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.08 E-value=0.24 Score=42.05 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=20.6
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.+++|.| +++.|+||||||...
T Consensus 67 lv~~~l~G~n~~i~aYGqtgSGKTyT~ 93 (323)
T d1bg2a_ 67 IVKDVLEGYNGTIFAYGQTSSGKTHTM 93 (323)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHcCCCcceeeecccCCCCceec
Confidence 4566788987 899999999999754
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=85.88 E-value=0.15 Score=38.58 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=14.2
Q ss_pred CcEEEECCCCcHHHHH
Q psy18032 75 RDVVAMARTGSGKTAC 90 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~ 90 (333)
|.+++.||+|||||..
T Consensus 8 K~I~i~G~~GsGKTTl 23 (192)
T d1lw7a2 8 KTVAILGGESSGKSVL 23 (192)
T ss_dssp EEEEEECCTTSHHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 6799999999999963
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=85.76 E-value=0.12 Score=39.00 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.8
Q ss_pred cCCcEEEECCCCcHHHHHH
Q psy18032 73 EGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 73 ~g~d~l~~a~TGsGKT~~~ 91 (333)
.|+=+++.||+|||||..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4667899999999999743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=85.68 E-value=0.16 Score=37.95 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=13.1
Q ss_pred EEEECCCCcHHHHHH
Q psy18032 77 VVAMARTGSGKTACF 91 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~ 91 (333)
+++.||+|||||..+
T Consensus 5 I~i~G~~GsGKTTva 19 (176)
T d2bdta1 5 YIITGPAGVGKSTTC 19 (176)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999754
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=85.39 E-value=0.14 Score=41.81 Aligned_cols=18 Identities=33% Similarity=0.200 Sum_probs=15.0
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
+.+|+.||+|+|||..+-
T Consensus 41 ~~vLL~GppGtGKT~la~ 58 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAA 58 (246)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECcCCCCHHHHHH
Confidence 369999999999997543
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=85.32 E-value=0.28 Score=36.55 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=11.6
Q ss_pred EEEECCCCcHHHH
Q psy18032 77 VVAMARTGSGKTA 89 (333)
Q Consensus 77 ~l~~a~TGsGKT~ 89 (333)
+.++|+.|||||.
T Consensus 5 i~itG~~GSGKTT 17 (170)
T d1np6a_ 5 LAFAAWSGTGKTT 17 (170)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEEcCCCCCHHH
Confidence 5789999999995
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.85 E-value=0.2 Score=39.92 Aligned_cols=19 Identities=16% Similarity=0.128 Sum_probs=15.5
Q ss_pred CCcEEEECCCCcHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFL 92 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~ 92 (333)
|+-+++.||+|||||...+
T Consensus 34 G~~~li~G~pGsGKT~l~l 52 (251)
T d1szpa2 34 GSITELFGEFRTGKSQLCH 52 (251)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4679999999999996443
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=84.81 E-value=0.21 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.2
Q ss_pred CcEEEECCCCcHHHHHHH
Q psy18032 75 RDVVAMARTGSGKTACFL 92 (333)
Q Consensus 75 ~d~l~~a~TGsGKT~~~~ 92 (333)
||++++|++|+|||...-
T Consensus 1 k~I~liG~~GsGKsTi~k 18 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLAR 18 (161)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 578999999999997544
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.50 E-value=0.13 Score=40.39 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=21.5
Q ss_pred cEEEEccCCCchhhHHHhhhhhhccCC
Q psy18032 303 DVVAMARTGSGKTACFLFYFFFRFDRG 329 (333)
Q Consensus 303 ~~~~~grtG~g~~~~~~lp~~~~~~~~ 329 (333)
++.-++.||+|||.++.++++..+.+.
T Consensus 42 ~~il~apTGsGKT~~a~l~i~~~~~~~ 68 (202)
T d2p6ra3 42 NLLLAMPTAAGKTLLAEMAMVREAIKG 68 (202)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CEEEEcCCCCchhHHHHHHHHHHhhcc
Confidence 344478899999999999998877653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.99 E-value=0.78 Score=36.12 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=26.9
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEcccHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
.+++.||+|+|||-... ++.+.+.. .+..+++ .+...+..+..+.+
T Consensus 38 ~l~l~G~~G~GKTHLl~-A~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~ 83 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQ-AAGNEAKK----RGYRVIY-SSADDFAQAMVEHL 83 (213)
T ss_dssp SEEEECSSSSSHHHHHH-HHHHHHHH----TTCCEEE-EEHHHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHH-HHHHHhcc----CccceEE-echHHHHHHHHHHH
Confidence 38999999999995322 33333333 2444444 46666666555444
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.97 E-value=0.33 Score=38.84 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=30.9
Q ss_pred CCcEEEECCCCcHHHHHHHHHHHHHhhhh-cccCCceEEEEcccHHHHHHHHHHH
Q psy18032 74 GRDVVAMARTGSGKTACFLIPMLEKLKTH-AATSGVRALILSPTRELALQTFKFV 127 (333)
Q Consensus 74 g~d~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~~lil~Pt~~L~~q~~~~~ 127 (333)
|+-+++.|++|+|||...+--+.+..... .......++++.....+..+....+
T Consensus 37 G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (258)
T d1v5wa_ 37 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 91 (258)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHH
Confidence 45699999999999965443333333221 1122445666666655544444433
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=2.7 Score=31.77 Aligned_cols=82 Identities=20% Similarity=0.247 Sum_probs=45.0
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc-HHHHHHHHHHHHHHhccCCceEEEEECCcchHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT-RELALQTFKFVKELGKFTKLQSTCLLGGDSMDNQ 150 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt-~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 150 (333)
++++++++.+--|+||+.+|.+.-. +.+.++++.. .+-+......++++....+..+... .-.....
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~----------g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~- 83 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIE----------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT-DLADQQA- 83 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHT----------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEE-ETTCHHH-
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhc----------CCceEeeeccchHHHHHHHHHHHHHHhhcCcceEee-ecccccc-
Confidence 3678999999999999876665421 4455555543 3333444444555544444443322 2222222
Q ss_pred HHHhhCCCCEEE-ECc
Q psy18032 151 FARLHASPDIVV-ATP 165 (333)
Q Consensus 151 ~~~l~~~~~IlI-~TP 165 (333)
.......++++| +||
T Consensus 84 ~~~~~~~~diiIN~Tp 99 (182)
T d1vi2a1 84 FAEALASADILTNGTK 99 (182)
T ss_dssp HHHHHHTCSEEEECSS
T ss_pred hhhhhcccceeccccC
Confidence 222334678888 666
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=83.16 E-value=0.53 Score=38.39 Aligned_cols=41 Identities=15% Similarity=0.136 Sum_probs=25.7
Q ss_pred hcCCcEEEECCCCcHHHHHHHHHHHHHhhhhcccCCceEEEEccc
Q psy18032 72 LEGRDVVAMARTGSGKTACFLIPMLEKLKTHAATSGVRALILSPT 116 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~lil~Pt 116 (333)
..|.=+++.|+||+|||....--+.+.... .+..+++++.-
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a~~----~g~~v~~~s~E 73 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTA----MGKKVGLAMLE 73 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHHHHHT----SCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHhhhhh----cccceeEeeec
Confidence 345669999999999995433333332222 25567777754
|
| >d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.60 E-value=1.3 Score=38.66 Aligned_cols=54 Identities=17% Similarity=0.140 Sum_probs=38.7
Q ss_pred cEEEECCCCcHHHHHHHHHHHHHhhhhccc-------CCceEEEEcccHHHHHHHHHHHHH
Q psy18032 76 DVVAMARTGSGKTACFLIPMLEKLKTHAAT-------SGVRALILSPTRELALQTFKFVKE 129 (333)
Q Consensus 76 d~l~~a~TGsGKT~~~~l~~l~~l~~~~~~-------~~~~~lil~Pt~~L~~q~~~~~~~ 129 (333)
.+||.|.-|||||.+..--++..+...... ..-..|+|+=|+.=|.++.+++..
T Consensus 18 ~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~ 78 (485)
T d1w36b1 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (485)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHH
Confidence 599999999999987776666655432110 112589999999888887777654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=82.42 E-value=0.17 Score=38.09 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=16.4
Q ss_pred hcCCcEEEECCCCcHHHHHH
Q psy18032 72 LEGRDVVAMARTGSGKTACF 91 (333)
Q Consensus 72 ~~g~d~l~~a~TGsGKT~~~ 91 (333)
..|.-++++|++|||||..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia 23 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIA 23 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45667899999999999655
|
| >d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif2c [TaxId: 10090]
Probab=82.22 E-value=0.41 Score=41.25 Aligned_cols=26 Identities=35% Similarity=0.500 Sum_probs=20.0
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACFL 92 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~~ 92 (333)
.+..++.|.| +++.|+||||||....
T Consensus 105 lv~~~l~G~n~tifaYGqTGSGKTyTm~ 132 (362)
T d1v8ka_ 105 LVQTIFEGGKATCFAYGQTGSGKTHTMG 132 (362)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHHHhccCceEEeeccCCCCCceeee
Confidence 3455678887 7778999999997643
|
| >d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Mouse (Mus musculus), kif1a [TaxId: 10090]
Probab=82.18 E-value=0.44 Score=40.80 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=20.1
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.+++|.| +++.|+||||||...
T Consensus 78 lv~~~l~G~n~ti~aYGqTgSGKT~Tm 104 (349)
T d2zfia1 78 MLQHAFEGYNVCIFAYGQTGAGKSYTM 104 (349)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhccCceeeeeccCCCCCceee
Confidence 3455688987 899999999999654
|
| >d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Neurospora crassa [TaxId: 5141]
Probab=82.14 E-value=0.42 Score=41.04 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=19.9
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.++.|.| +++.|+||||||...
T Consensus 71 lv~~~l~G~n~ti~aYG~tgSGKT~Tm 97 (354)
T d1goja_ 71 TVDDILNGYNGTVFAYGQTGAGKSYTM 97 (354)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhhccCceeEEecccCCCCcceee
Confidence 4456678888 888899999999654
|
| >d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin heavy chain-like protein species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=81.00 E-value=0.43 Score=41.17 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.0
Q ss_pred HHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 67 TIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 67 ~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
.++.++.|.| +++-|+||||||...
T Consensus 66 lv~~~l~G~n~~i~aYGqTGSGKTyTm 92 (364)
T d1sdma_ 66 LVQSAVDGYNVCIFAYGQTGSGKTFTI 92 (364)
T ss_dssp HHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCceeeeccccCCCCccccc
Confidence 4777889988 888899999999654
|
| >d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]
Probab=80.98 E-value=0.44 Score=40.71 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=20.8
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..+..++.|.| +++.|+||||||...
T Consensus 71 ~lv~~~l~G~n~~i~aYGqtgSGKTyTm 98 (345)
T d1x88a1 71 PILDEVIMGYNCTIFAYGQTGTGKTFTM 98 (345)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhccCCceEEeeeeccccceEEe
Confidence 34566788987 889999999999654
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| >d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Kinesin motor Ncd (non-claret disjunctional) species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=80.78 E-value=0.44 Score=41.16 Aligned_cols=26 Identities=38% Similarity=0.558 Sum_probs=21.8
Q ss_pred hHHHHHhcCCc--EEEECCCCcHHHHHH
Q psy18032 66 KTIPLVLEGRD--VVAMARTGSGKTACF 91 (333)
Q Consensus 66 ~~i~~i~~g~d--~l~~a~TGsGKT~~~ 91 (333)
..++.++.|.| +++.|+||||||...
T Consensus 115 plv~~vl~G~n~ti~aYGqtGSGKT~Tm 142 (368)
T d2ncda_ 115 PLIQSALDGYNICIFAYGQTGSGKTYTM 142 (368)
T ss_dssp HHHHHHHTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcccceeEEeeccCCCccceEe
Confidence 36777889988 899999999999654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=80.24 E-value=0.22 Score=40.50 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=12.6
Q ss_pred EEEECCCCcHHHHHHH
Q psy18032 77 VVAMARTGSGKTACFL 92 (333)
Q Consensus 77 ~l~~a~TGsGKT~~~~ 92 (333)
+++.||+|+|||.+.-
T Consensus 49 l~l~GppGtGKT~l~~ 64 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAK 64 (287)
T ss_dssp EECTTCCSSSHHHHHH
T ss_pred EEeECCCCCCHHHHHH
Confidence 4567999999997554
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