Psyllid ID: psy18082

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MGPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVKERLLTHW
Secondary Structure (PSIPRED)
cccEEEEEcccccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEcccccEEEEcccccEEEcHHHHHHHcccccccccEEEEEEccccccccccccHHHHHHccccccccccccccccccccHHHHHHccHHHHHHcccHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEcccHccccEEEEEEEccEEcccccccEEEEEcccEEccccccccccEcccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccEEEEEEEEEEEccccccEEEEEEEccccccEEEEccccccEccHHHHHHHccccccccccccccccccccccccccccHHHHHccccccccccccccccHHHHHHHHHccccHHHHccccccHHHccccccccccccccccEEcccc
Coil and Loop (DISEMBL)
MGPIVYKADALSSKHIKLAIHQdkvvdfsgttsenitiedlmgvtsvetnspssepqytfrldygvrkgaesnqastnqdeehceenqldpsvsnpvitpyngdvdegidishpeppstsatkdpsmnakgpyVYELFSIMIHsgsasgghYYAYIKNFstdewycfndqsvtritdedihksygggpargyysgfedkvvdfsgttsenitiedlmgvtsvetnspssepqytfrldygvrkgaesnqastnqdeehceenqldpsvsnpvkerllthw
Flexible Loop (DISEMBL)
MGPIVYKADALSSKHIKlaihqdkvvdfsgttsenitiedlmgvTSVEtnspssepqyTFRLDYGVRKGAESNQASTNQDEEHceenqldpsvsnpVITPYNGDVDEGIDISHPEPpstsatkdpsmnAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTsenitiedlmgvTSVEtnspssepqyTFRLDYGVRKGAESNQAstnqdeehceenqldpsvsnpvkerllthw
Low Complexity Region (SEG)
MGPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVKERLLTHW
Disordered region (IsUnstruct)
****VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGV***************************************************************************************PYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGV*************************************************************
Disordered Region (DISOPRED)
*GPI*YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGV******************************VITPYNGDVDEGIDISHPEPPST*A*******AKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENIT***************************************************LDPSVSNPVK*******
Disordered Region (DISEMBL)
MGPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS*********PQYTFRLDYGVRKG*********************PSVSNPVITPYNGDVDEGIDISHPE**********SMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTS*********PQYTFRLDYGVRKG**********************SVSNPVKERLLTHW
Disordered Region (DISPRO)
*GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYG********************ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPS*NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG**************CEENQLDPSVSNPVKERL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVKERLLTHW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q24574	1556	Ubiquitin carboxyl-termin	yes	N/A	0.271	0.048	0.626	6e-25
A1A5G2	1354	Ubiquitin carboxyl-termin	yes	N/A	0.567	0.117	0.394	3e-20
Q5U252	1350	Ubiquitin carboxyl-termin	N/A	N/A	0.567	0.117	0.394	3e-20
Q96K76	1375	Ubiquitin carboxyl-termin	yes	N/A	0.535	0.109	0.396	1e-18
Q8BY87	1376	Ubiquitin carboxyl-termin	yes	N/A	0.535	0.109	0.396	3e-18
E1C1R4	1375	Ubiquitin carboxyl-termin	yes	N/A	0.532	0.108	0.380	6e-18
Q9UMW8	372	Ubl carboxyl-terminal hyd	no	N/A	0.182	0.137	0.450	4e-09
Q3LFD5	358	Putative ubiquitin carbox	no	N/A	0.182	0.142	0.450	6e-09
Q9WTV6	368	Ubl carboxyl-terminal hyd	no	N/A	0.2	0.152	0.446	7e-09
Q5RE63	375	Ubl carboxyl-terminal hyd	no	N/A	0.182	0.136	0.431	1e-08

>sp|Q24574|UBPE_DROME Ubiquitin carboxyl-terminal hydrolase 64E OS=Drosophila melanogaster GN=Ubp64E PE=1 SV=2

 Score =  114 bits (286), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 52/83 (62%), Positives = 63/83 (75%), Gaps = 7/83 (8%)

Query: 104 DVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163
           D DEGID+S       S+T   +    GPY+YELF+IMIHSGSASGGHYYAYIK+F  +E
Sbjct: 680 DEDEGIDMS-------SSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAYIKDFDNNE 732

Query: 164 WYCFNDQSVTRITDEDIHKSYGG 186
           W+CFNDQ+VT IT EDI +S+GG
Sbjct: 733 WFCFNDQNVTSITQEDIQRSFGG 755

Has an effect on position-effect variegation.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|A1A5G2|UBP47_XENTR Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus tropicalis GN=usp47 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 93/180 (51%), Gaps = 21/180 (11%)

Query: 18  LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSP--SSEPQYTFRLDYGVRKGAESNQA 75
           L   Q K  DF  T+   I + D M        SP    E + + + D     GAE    
Sbjct: 371 LLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDVEDEKSPQTDSCTDSGAE---- 426

Query: 76  STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
               +E  C  +Q+    S       +  VDEGI +   E  S     + S++ K   +Y
Sbjct: 427 ----NEGSCHSDQMSNDFST------DDAVDEGICL---ETNSNIEKLNKSVSEKNS-LY 472

Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA-RGYYS 194
           ELFS+M+HSGSA+GGHYYA IK+F+  +WY FNDQ V+RIT EDI K+YGG    RGYYS
Sbjct: 473 ELFSVMVHSGSAAGGHYYACIKSFADGQWYSFNDQHVSRITQEDIKKTYGGSTGNRGYYS 532

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (polb), stabilizing polb thereby playing a role in base-excision repair (BER).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5U252|UBP47_XENLA Ubiquitin carboxyl-terminal hydrolase 47 OS=Xenopus laevis GN=usp47 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 92/180 (51%), Gaps = 21/180 (11%)

Query: 18  LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSP--SSEPQYTFRLDYGVRKGAESNQA 75
           L   Q K  DF  T+   I + D M        SP    E + + + D     GAE    
Sbjct: 370 LLTLQLKRFDFDYTSMHRIKLNDRMTFPDELDMSPFIDMEDEKSPQTDSCTDSGAE---- 425

Query: 76  STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
               +E  C  +Q+    S       +  VDEGI +   E  S     + S+  K   +Y
Sbjct: 426 ----NEGSCHSDQMSNDFST------DDAVDEGICL---ETNSNIEKLNKSVAEKNS-LY 471

Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA-RGYYS 194
           ELFS+M+HSGSA+GGHYYA IK+F+  +WY FNDQ V+RIT EDI K+YGG    RGYYS
Sbjct: 472 ELFSVMVHSGSAAGGHYYACIKSFADGQWYSFNDQHVSRITQEDIKKTYGGATGNRGYYS 531

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (polb), stabilizing polb thereby playing a role in base-excision repair (BER).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96K76|UBP47_HUMAN Ubiquitin carboxyl-terminal hydrolase 47 OS=Homo sapiens GN=USP47 PE=1 SV=3

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 86/169 (50%), Gaps = 19/169 (11%)

Query: 18  LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
           L   Q K  DF  TT   I + D M         P      TF +D    K    ES   
Sbjct: 385 LLTLQLKRFDFDYTTMHRIKLNDRMTF-------PEELDMSTF-IDVEDEKSPQTESCTD 436

Query: 76  STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
           S  ++E  C  +Q+    SN      +  VDEGI +   E  S +     S   K   +Y
Sbjct: 437 SGAENEGSCHSDQMSNDFSN------DDGVDEGICL---ETNSGTEKISKSGLEKNSLIY 487

Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
           ELFS+M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++
Sbjct: 488 ELFSVMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTH 536

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER). Acts as a regulator of cell growth and genome integrity. May also indirectly regulates CDC25A expression at a transcriptional level.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8BY87|UBP47_MOUSE Ubiquitin carboxyl-terminal hydrolase 47 OS=Mus musculus GN=Usp47 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 67/169 (39%), Positives = 84/169 (49%), Gaps = 19/169 (11%)

Query: 18  LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
           L   Q K  DF  TT   I + D M         P      TF +D    K    ES   
Sbjct: 385 LLTLQLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTD 436

Query: 76  STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
           S  ++E  C  +Q+    S       +  VDEGI +   E  S S         K   +Y
Sbjct: 437 SGAENEGSCHSDQMSNDFST------DDAVDEGICL---ESSSGSEKISKPGLEKNSLMY 487

Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
           ELFS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++
Sbjct: 488 ELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTH 536

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER) (By similarity). Acts as a regulator of cell growth and genome integrity. May also indirectly regulates CDC25A expression at a transcriptional level.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|E1C1R4|UBP47_CHICK Ubiquitin carboxyl-terminal hydrolase 47 OS=Gallus gallus GN=USP47 PE=3 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/168 (38%), Positives = 84/168 (50%), Gaps = 19/168 (11%)

Query: 18  LAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKG--AESNQA 75
           L   Q K  DF  TT   I + D M            E   +  +D    K    ES   
Sbjct: 384 LLTLQLKRFDFDYTTMHRIKLNDRMTF--------PEELDMSIFIDVEDEKSPQTESCTD 435

Query: 76  STNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVY 135
           S  ++E  C  +Q+    SN      +  VDEGI +   E  S +       + K   +Y
Sbjct: 436 SGAENEGSCHSDQMSNDFSN------DDGVDEGICL---ESNSAAERIAKVGSEKNSLLY 486

Query: 136 ELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           ELFS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V++IT EDI K+
Sbjct: 487 ELFSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSKITQEDIKKT 534

Ubiquitin-specific protease that specifically deubiquitinates monoubiquitinated DNA polymerase beta (POLB), stabilizing POLB thereby playing a role in base-excision repair (BER).

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9UMW8|UBP18_HUMAN Ubl carboxyl-terminal hydrolase 18 OS=Homo sapiens GN=USP18 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
           YELF+++ H G A  GHY  YI+N    +W+CFND ++  ++ EDI  +YG
Sbjct: 302 YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 352

Can efficiently cleave only ISG15 fusions including native ISG15 conjugates linked via isopeptide bonds. Necessary to maintain a critical cellular balance of ISG15-conjugated proteins in both healthy and stressed organisms.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q3LFD5|UBP41_HUMAN Putative ubiquitin carboxyl-terminal hydrolase 41 OS=Homo sapiens GN=USP41 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)

Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
           YELF+++ H G A  GHY  YI+N    +W+CFND ++  ++ EDI  +YG
Sbjct: 302 YELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 352

May recognize and hydrolyze the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9WTV6|UBP18_MOUSE Ubl carboxyl-terminal hydrolase 18 OS=Mus musculus GN=Usp18 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPAR 190
           YELF+++ H G A  GHY AYI+N    +W+CFND  V  +T +D+  +YG    R
Sbjct: 298 YELFAVIAHVGMADFGHYCAYIRNPVDGKWFCFNDSHVCWVTWKDVQCTYGNHRYR 353

Can efficiently cleave only ISG15 fusions including native ISG15 conjugates linked via isopeptide bonds. Necessary to maintain a critical cellular balance of ISG15-conjugated proteins in both healthy and stressed organisms.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|Q5RE63|UBP18_PONAB Ubl carboxyl-terminal hydrolase 18 OS=Pongo abelii GN=USP18 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYG 185
           +ELF+++ H G A  GHY  YI+N    +W+CFND ++  ++ EDI  +YG
Sbjct: 305 FELFAVIAHVGMADSGHYCVYIRNAVDGKWFCFNDSNICLVSWEDIQCTYG 355

Can efficiently cleave only ISG15 fusions including native ISG15 conjugates linked via isopeptide bonds. Necessary to maintain a critical cellular balance of ISG15-conjugated proteins in both healthy and stressed organisms.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
332023305	1365	Ubiquitin carboxyl-terminal hydrolase 47	0.332	0.068	0.647	2e-30
91079889	1307	PREDICTED: similar to conserved hypothet	0.303	0.065	0.673	5e-29
307170640	1319	Ubiquitin carboxyl-terminal hydrolase 47	0.332	0.070	0.640	7e-29
322801754	999	hypothetical protein SINV_07511 [Solenop	0.317	0.089	0.649	2e-28
307201541	1275	Ubiquitin carboxyl-terminal hydrolase 47	0.332	0.072	0.619	4e-28
340716657	1343	PREDICTED: ubiquitin carboxyl-terminal h	0.346	0.072	0.625	7e-28
340716655	1277	PREDICTED: ubiquitin carboxyl-terminal h	0.346	0.075	0.625	7e-28
350396999	1277	PREDICTED: ubiquitin carboxyl-terminal h	0.339	0.074	0.632	1e-27
380018250	1278	PREDICTED: ubiquitin carboxyl-terminal h	0.339	0.074	0.632	2e-27
328790123	1280	PREDICTED: ubiquitin carboxyl-terminal h	0.339	0.074	0.632	2e-27

>gi|332023305|gb|EGI63559.1| Ubiquitin carboxyl-terminal hydrolase 47 [Acromyrmex echinatior]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 78/105 (74%), Gaps = 12/105 (11%)

Query: 101 YNGDVDEGIDISHPEPPSTS----------ATKDPSMNAKGPYVYELFSIMIHSGSASGG 150
           ++ D DEGID+S+   PSTS            +   M  KGPY YELFSIMIHSGSASGG
Sbjct: 506 HDQDDDEGIDMSNG--PSTSNCITHNHENEKNRSAYMLGKGPYTYELFSIMIHSGSASGG 563

Query: 151 HYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           HYYAYIK+F T EW CFNDQSVT+ITD+DIHK+YGGGP+R YYSG
Sbjct: 564 HYYAYIKDFRTQEWLCFNDQSVTQITDDDIHKTYGGGPSRAYYSG 608

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079889|ref|XP_968047.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum]

 Score =  134 bits (336), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%), Gaps = 7/92 (7%)

Query: 104 DVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE 163
           D DEGID+S       S       +AKGPY+YELFSIMIHSGSASGGHYYAYIK+F  ++
Sbjct: 473 DSDEGIDVS-------SGNAHHENDAKGPYIYELFSIMIHSGSASGGHYYAYIKDFDKNQ 525

Query: 164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           W CFNDQSV RIT+EDI K+YGGGP +GYYSG
Sbjct: 526 WLCFNDQSVNRITEEDIKKTYGGGPQKGYYSG 557

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170640|gb|EFN62824.1| Ubiquitin carboxyl-terminal hydrolase 47 [Camponotus floridanus]

 Score =  133 bits (335), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 66/103 (64%), Positives = 76/103 (73%), Gaps = 10/103 (9%)

Query: 102 NGDVDEGIDISHPEPPSTSATKDPSMN---------AKGPYVYELFSIMIHSGSASGGHY 152
           N D DEGID+S+  P ++S T     N          KGPY+YELFSIMIHSGSASGGHY
Sbjct: 464 NHDPDEGIDMSNG-PSTSSCTTHNHENENNRSTYTLGKGPYMYELFSIMIHSGSASGGHY 522

Query: 153 YAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           YAYIK+F T EW CFNDQSVT+IT +DI K+YGGGP+R YYSG
Sbjct: 523 YAYIKDFRTQEWLCFNDQSVTQITHDDIQKTYGGGPSRAYYSG 565

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801754|gb|EFZ22351.1| hypothetical protein SINV_07511 [Solenopsis invicta]

 Score =  132 bits (331), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 73/97 (75%), Gaps = 8/97 (8%)

Query: 107 EGIDISHPEPPSTSAT--------KDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKN 158
           EGID+S+    S+ AT        +   M  KGPY+YELFSIMIHSGSASGGHYYAYIK+
Sbjct: 185 EGIDMSNGPSTSSCATHSHENEKNRGTYMLGKGPYMYELFSIMIHSGSASGGHYYAYIKD 244

Query: 159 FSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           F T EW CFNDQSVT+IT +DI K+YGGGP+R YYSG
Sbjct: 245 FRTQEWLCFNDQSVTQITHDDIQKTYGGGPSRAYYSG 281

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201541|gb|EFN81304.1| Ubiquitin carboxyl-terminal hydrolase 47 [Harpegnathos saltator]

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 65/105 (61%), Positives = 75/105 (71%), Gaps = 12/105 (11%)

Query: 101 YNGDVDEGIDISHPEPPSTS----------ATKDPSMNAKGPYVYELFSIMIHSGSASGG 150
           ++ D DEGID+S+   PSTS            +   M  +GPY YELFSIMIHSGSASGG
Sbjct: 436 HDQDDDEGIDMSNG--PSTSNCTVHNHENEKNRGTYMLGRGPYQYELFSIMIHSGSASGG 493

Query: 151 HYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           HYYAYIK+F T EW CFNDQSVT+IT +DI K+YGGGP R YYSG
Sbjct: 494 HYYAYIKDFRTQEWLCFNDQSVTQITHDDIQKTYGGGPTRAYYSG 538

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716657|ref|XP_003396812.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 47-like isoform 2 [Bombus terrestris]

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 7/104 (6%)

Query: 99  TPYNGDVDEGIDISHPEPPSTSAT------KDPSMNA-KGPYVYELFSIMIHSGSASGGH 151
           T ++ D DEGID+S+    S  A       K+ S NA KGPY YELFSIMIHSGSASGGH
Sbjct: 500 TNHDQDDDEGIDMSNGPSTSNCAVHNHENEKNRSSNAAKGPYNYELFSIMIHSGSASGGH 559

Query: 152 YYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           YYAYIK+F T+EW+CFNDQSVT+IT +DI K+YGGG  R Y++G
Sbjct: 560 YYAYIKDFRTNEWFCFNDQSVTQITHDDIQKTYGGGSTRSYFTG 603

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716655|ref|XP_003396811.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 47-like isoform 1 [Bombus terrestris]

 Score =  130 bits (326), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 78/104 (75%), Gaps = 7/104 (6%)

Query: 99  TPYNGDVDEGIDISHPEPPSTSAT------KDPSMNA-KGPYVYELFSIMIHSGSASGGH 151
           T ++ D DEGID+S+    S  A       K+ S NA KGPY YELFSIMIHSGSASGGH
Sbjct: 434 TNHDQDDDEGIDMSNGPSTSNCAVHNHENEKNRSSNAAKGPYNYELFSIMIHSGSASGGH 493

Query: 152 YYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           YYAYIK+F T+EW+CFNDQSVT+IT +DI K+YGGG  R Y++G
Sbjct: 494 YYAYIKDFRTNEWFCFNDQSVTQITHDDIQKTYGGGSTRSYFTG 537

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396999|ref|XP_003484735.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 47-like [Bombus impatiens]

 Score =  129 bits (325), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 80/106 (75%), Gaps = 11/106 (10%)

Query: 99  TPYNGDVDEGIDISHPEPPSTSAT--------KDPSMNA-KGPYVYELFSIMIHSGSASG 149
           T ++ D DEGID+S+   PSTS          K+ S NA KGPY YELFSIMIHSGSASG
Sbjct: 434 TNHDQDDDEGIDMSNG--PSTSNCTVHNHENEKNRSSNAAKGPYNYELFSIMIHSGSASG 491

Query: 150 GHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           GHYYAYIK+F T+EW+CFNDQSVT+IT +DI K+YGGG  R Y++G
Sbjct: 492 GHYYAYIKDFRTNEWFCFNDQSVTQITHDDIQKTYGGGSTRSYFTG 537

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018250|ref|XP_003693046.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 47 [Apis florea]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 11/106 (10%)

Query: 99  TPYNGDVDEGIDISHPEPPSTSAT--------KDPSMNA-KGPYVYELFSIMIHSGSASG 149
           T ++ D DEGID+S+   PSTS          K+ + NA KGPY YELFSIMIHSGSASG
Sbjct: 436 TNHDQDDDEGIDMSNG--PSTSNCTMHNHENEKNRNSNAAKGPYNYELFSIMIHSGSASG 493

Query: 150 GHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           GHYYAYIK+F T EW+CFNDQSVT+IT +DI K+YGGG  R Y+SG
Sbjct: 494 GHYYAYIKDFRTQEWFCFNDQSVTQITHDDIQKTYGGGSTRSYFSG 539

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790123|ref|XP_392439.4| PREDICTED: ubiquitin carboxyl-terminal hydrolase 47-like isoform 1 [Apis mellifera]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/106 (63%), Positives = 79/106 (74%), Gaps = 11/106 (10%)

Query: 99  TPYNGDVDEGIDISHPEPPSTSAT--------KDPSMNA-KGPYVYELFSIMIHSGSASG 149
           T ++ D DEGID+S+   PSTS          K+ + NA KGPY YELFSIMIHSGSASG
Sbjct: 436 TNHDQDDDEGIDMSNG--PSTSNCTMHNHENEKNRNSNAAKGPYNYELFSIMIHSGSASG 493

Query: 150 GHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSG 195
           GHYYAYIK+F T EW+CFNDQSVT+IT +DI K+YGGG  R Y+SG
Sbjct: 494 GHYYAYIKDFRTQEWFCFNDQSVTQITHDDIQKTYGGGSTRSYFSG 539

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
FB|FBgn0016756	1556	Ubp64E "Ubiquitin-specific pro	0.632	0.113	0.388	1.1e-24
UNIPROTKB|F1S6W7	1084	USP47 "Uncharacterized protein	0.557	0.143	0.397	6.9e-23
UNIPROTKB|F1N1Z2	1375	USP47 "Ubiquitin carboxyl-term	0.557	0.113	0.397	1.3e-22
UNIPROTKB|F1PZF8	1349	USP47 "Ubiquitin carboxyl-term	0.557	0.115	0.397	1.6e-22
RGD|1310411	1355	Usp47 "ubiquitin specific pept	0.55	0.113	0.410	3.3e-22
UNIPROTKB|E9PT09	1357	Usp47 "Ubiquitin carboxyl-term	0.55	0.113	0.410	3.3e-22
UNIPROTKB|F1LYA3	1363	Usp47 "Ubiquitin carboxyl-term	0.55	0.112	0.410	3.3e-22
MGI|MGI:1922246	1376	Usp47 "ubiquitin specific pept	0.557	0.113	0.409	3.3e-22
UNIPROTKB|E9PM46	1355	USP47 "Ubiquitin carboxyl-term	0.55	0.113	0.398	5.4e-22
UNIPROTKB|Q96K76	1375	USP47 "Ubiquitin carboxyl-term	0.55	0.112	0.398	5.5e-22

FB|FBgn0016756 Ubp64E "Ubiquitin-specific protease 64E" [Drosophila melanogaster (taxid:7227)]

 Score = 296 (109.3 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 77/198 (38%), Positives = 106/198 (53%)

Query:     7 KADALSSKHIK-----LAIHQDKVVDFSGTTSENITIEDLMG---VTSVET--NSPSSEP 56
             K DA    H K     L +H  K  DF   T   I + D +      ++ T  N   +  
Sbjct:   576 KCDAHKGLHFKSFPYILTLHL-KRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSG 634

Query:    57 QYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEP 116
             +   +L+  V   + ++  S  +D+ +     +  + S+      N D DEGID+S    
Sbjct:   635 EQNSQLNGTVDDCSTADSGSAMEDD-NLSSGVVTTASSSQHENDLN-DEDEGIDMS---- 688

Query:   117 PSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
                S+T   +    GPY+YELF+IMIHSGSASGGHYYAYIK+F  +EW+CFNDQ+VT IT
Sbjct:   689 ---SSTSKSAKQGSGPYLYELFAIMIHSGSASGGHYYAYIKDFDNNEWFCFNDQNVTSIT 745

Query:   177 DEDIHKSYGGGPARGYYS 194
              EDI +S+GG P   YYS
Sbjct:   746 QEDIQRSFGG-PNGSYYS 762

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;NAS

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0006508 "proteolysis" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0050821 "protein stabilization" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IGI;IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0031935 "regulation of chromatin silencing" evidence=IMP

UNIPROTKB|F1S6W7 USP47 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 277 (102.6 bits), Expect = 6.9e-23, P = 6.9e-23
 Identities = 70/176 (39%), Positives = 95/176 (53%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:    95 QLKRFDFDYTTMHRIKLNDRM-------TFPEELDMSTF-IDVEDEKSPQTESCTDSGAE 146

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFS 139
             +E  C  +Q+    SN      +G VDEGI + +     T     P +  K   +YELFS
Sbjct:   147 NEGSCHSDQMSNDFSND-----DG-VDEGICLENNS--GTEKISKPGLE-KNSLIYELFS 197

Query:   140 IMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             +M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   198 VMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 253

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1N1Z2 USP47 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 70/176 (39%), Positives = 95/176 (53%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   389 QLKRFDFDYTTMHRIKLNDRM-------TFPEELDMSTF-IDVEDEKSPQTESCTDSGAE 440

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFS 139
             +E  C  +Q+    SN      +G VDEGI + +     T     P +  K   +YELFS
Sbjct:   441 NEGSCHSDQMSNDFSND-----DG-VDEGICLENNS--GTEKIPKPGLE-KNSLIYELFS 491

Query:   140 IMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             +M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   492 VMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 547

GO:0071987 "WD40-repeat domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1PZF8 USP47 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 275 (101.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 70/176 (39%), Positives = 94/176 (53%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   363 QLKRFDFDYTTMHRIKLNDRM-------TFPEELDMSTF-IDVEDEKSPQTESCTDSGAE 414

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFS 139
             +E  C  +Q+    SN      +G VDEGI +       T     P +  K   +YELFS
Sbjct:   415 NEGSCHSDQMSNDFSND-----DG-VDEGICLESNS--GTEKISKPGLE-KNSLIYELFS 465

Query:   140 IMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             +M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   466 VMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 521

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

RGD|1310411 Usp47 "ubiquitin specific peptidase 47" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 73/178 (41%), Positives = 97/178 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   369 QLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTDSGAE 420

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATK--DPSMNAKGPYVYEL 137
             +E  C  +Q+    SN   T  +  VDEGI +      ST + K   P +  K   +YEL
Sbjct:   421 NEGSCHSDQM----SNDFST--DDAVDEGICLES----STGSEKISKPGLE-KNSLMYEL 469

Query:   138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             FS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   470 FSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 527

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006284 "base-excision repair" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IEA;ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA;ISO

GO:0030307 "positive regulation of cell growth" evidence=IEA;ISO

GO:0034644 "cellular response to UV" evidence=IEA;ISO

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0043066 "negative regulation of apoptotic process" evidence=IEA;ISO

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0071987 "WD40-repeat domain binding" evidence=IEA;ISO

UNIPROTKB|E9PT09 Usp47 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 73/178 (41%), Positives = 97/178 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   369 QLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTDSGAE 420

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATK--DPSMNAKGPYVYEL 137
             +E  C  +Q+    SN   T  +  VDEGI +      ST + K   P +  K   +YEL
Sbjct:   421 NEGSCHSDQM----SNDFST--DDAVDEGICLES----STGSEKISKPGLE-KNSLMYEL 469

Query:   138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             FS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   470 FSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 527

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0034644 "cellular response to UV" evidence=IEA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0071987 "WD40-repeat domain binding" evidence=IEA

UNIPROTKB|F1LYA3 Usp47 "Ubiquitin carboxyl-terminal hydrolase" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 73/178 (41%), Positives = 97/178 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   376 QLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTDSGAE 427

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATK--DPSMNAKGPYVYEL 137
             +E  C  +Q+    SN   T  +  VDEGI +      ST + K   P +  K   +YEL
Sbjct:   428 NEGSCHSDQM----SNDFST--DDAVDEGICLES----STGSEKISKPGLE-KNSLMYEL 476

Query:   138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             FS+M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   477 FSVMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 534

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

MGI|MGI:1922246 Usp47 "ubiquitin specific peptidase 47" [Mus musculus (taxid:10090)]

 Score = 272 (100.8 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 72/176 (40%), Positives = 96/176 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   389 QLKRFDFDYTTMHRIKLNDRMSF-------PEELDMSTF-IDIEDEKSPQTESCTDSGAE 440

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFS 139
             +E  C  +Q+    SN   T  +  VDEGI +      S   +K P +  K   +YELFS
Sbjct:   441 NEGSCHSDQM----SNDFST--DDAVDEGICLESSSG-SEKISK-PGLE-KNSLMYELFS 491

Query:   140 IMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             +M+HSGSA+GGHYYA IK+FS D+WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   492 VMVHSGSAAGGHYYACIKSFSDDQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 547

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=ISO

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006974 "response to DNA damage stimulus" evidence=ISO

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=ISO;ISS

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0034644 "cellular response to UV" evidence=IMP

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=ISO

GO:0042493 "response to drug" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;IMP

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISO;ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO;ISS

GO:0071987 "WD40-repeat domain binding" evidence=ISO

UNIPROTKB|E9PM46 USP47 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 71/178 (39%), Positives = 97/178 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   369 QLKRFDFDYTTMHRIKLNDRM-------TFPEELDMSTF-IDVEDEKSPQTESCTDSGAE 420

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNA--KGPYVYEL 137
             +E  C  +Q+    SN      +G VDEGI +      + S T+  S +   K   +YEL
Sbjct:   421 NEGSCHSDQMSNDFSND-----DG-VDEGICLE-----TNSGTEKISKSGLEKNSLIYEL 469

Query:   138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             FS+M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   470 FSVMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 527

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|Q96K76 USP47 "Ubiquitin carboxyl-terminal hydrolase 47" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 71/178 (39%), Positives = 97/178 (54%)

Query:    22 QDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN--Q 79
             Q K  DF  TT   I + D M         P      TF +D    K  ++   + +  +
Sbjct:   389 QLKRFDFDYTTMHRIKLNDRM-------TFPEELDMSTF-IDVEDEKSPQTESCTDSGAE 440

Query:    80 DEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNA--KGPYVYEL 137
             +E  C  +Q+    SN      +G VDEGI +      + S T+  S +   K   +YEL
Sbjct:   441 NEGSCHSDQMSNDFSND-----DG-VDEGICLE-----TNSGTEKISKSGLEKNSLIYEL 489

Query:   138 FSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS 194
             FS+M+HSGSA+GGHYYA IK+FS ++WY FNDQ V+RIT EDI K++GG   +RGYYS
Sbjct:   490 FSVMVHSGSAAGGHYYACIKSFSDEQWYSFNDQHVSRITQEDIKKTHGGSSGSRGYYS 547

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0042493 "response to drug" evidence=IMP

GO:0034644 "cellular response to UV" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0006284 "base-excision repair" evidence=IMP

GO:0071987 "WD40-repeat domain binding" evidence=IPI

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0030307 "positive regulation of cell growth" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0035520 "monoubiquitinated protein deubiquitination" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	280
cd02659	334	cd02659, peptidase_C19C, A subfamily of Peptidase	2e-23
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	1e-17
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	4e-16
cd02674	230	cd02674, Peptidase_C19R, A subfamily of peptidase	1e-15
cd02657	305	cd02657, Peptidase_C19A, A subfamily of Peptidase	1e-13
COG5077	1089	COG5077, COG5077, Ubiquitin carboxyl-terminal hydr	3e-11
cd02666	343	cd02666, Peptidase_C19J, A subfamily of Peptidase	1e-10
cd02661	304	cd02661, Peptidase_C19E, A subfamily of Peptidase	1e-10
cd02665	228	cd02665, Peptidase_C19I, A subfamily of Peptidase	2e-10
COG5560	823	COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po	2e-10
cd02668	324	cd02668, Peptidase_C19L, A subfamily of Peptidase	2e-10
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	1e-09
cd02663	300	cd02663, Peptidase_C19G, A subfamily of Peptidase	7e-06
COG5533	415	COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos	2e-05
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	4e-05
cd02671	332	cd02671, Peptidase_C19O, A subfamily of Peptidase	3e-04
cd02664	327	cd02664, Peptidase_C19H, A subfamily of Peptidase	3e-04
cd02672	268	cd02672, Peptidase_C19P, A subfamily of Peptidase	0.001
cd02662	240	cd02662, Peptidase_C19F, A subfamily of Peptidase	0.002

>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19

 Score = 96.9 bits (242), Expect = 2e-23
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 6/96 (6%)

Query: 113 HPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSV 172
                   + K  S      Y+YEL  +++HSG A GGHYY+YIK+    +WY FND  V
Sbjct: 234 GLAKKEGDSEKKDS----ESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVV 289

Query: 173 TRITDEDIHKSYGGGPARGYYSGFEDKVVDFSGTTS 208
           T     D  +   GG        ++     F  TT+
Sbjct: 290 TPFDPNDAEEECFGGE--ETQKTYDSGPRAFKRTTN 323

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 334

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 28/70 (40%), Positives = 43/70 (61%), Gaps = 1/70 (1%)

Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRI 175
           P  S  +  S +  G Y YEL ++++HSG SA  GHY AY+K+ S  +WY FND  VT +
Sbjct: 175 PYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEV 234

Query: 176 TDEDIHKSYG 185
           ++E++ +   
Sbjct: 235 SEEEVLEFGS 244

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 76.3 bits (188), Expect = 4e-16
 Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 124 DPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK 182
           +     + P  YEL ++++HSG S SGGHY AYIK    ++W  F+D+ V+ +T+E++ +
Sbjct: 246 EELEGEEPPTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTEEEVLR 305

Query: 183 SYG 185
           S  
Sbjct: 306 SSA 308

Length = 313

>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19

 Score = 73.9 bits (182), Expect = 1e-15
 Identities = 23/53 (43%), Positives = 38/53 (71%)

Query: 131 GPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           GP+ Y+L++++ H GS +GGHY AY KN  T++WY F+D  VT++++  +  S
Sbjct: 170 GPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSS 222

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230

>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 134 VYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA 189
            YEL +++ H G SA  GHY A+++  +  +W  F+D  V+ +T+EDI K  GGG  
Sbjct: 240 YYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDW 296

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 305

>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 117 PSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
           P      D S N+    VY L+ +++HSG    GHYYA +K      WY F+D  VTR T
Sbjct: 415 PFLDRDADKSENSD--AVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRAT 472

Query: 177 D-EDIHKSYGGGPA 189
           + E + +++GG   
Sbjct: 473 EKEVLEENFGGDHP 486

Length = 1089

>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query: 133 YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
           Y Y L ++ IH G AS GHY+ YIK+F  + W  +ND++VT +   ++
Sbjct: 279 YGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEV 326

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 343

>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIH--KSY 184
           GP  Y+L+++++HSG S   GHYY Y+K+ S  +WY  +D  V+ ++ E +   K+Y
Sbjct: 244 GPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNGKWYNMDDSKVSPVSIETVLSQKAY 299

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 304

>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19

 Score = 59.5 bits (144), Expect = 2e-10
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK-SYGGGPARGYY 193
           YEL ++++H G A+ GHY+AYI   S  EW  +ND SVT  + E++ + S+GGG     Y
Sbjct: 164 YELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAY 223

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 228

>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 60.7 bits (147), Expect = 2e-10
 Identities = 21/50 (42%), Positives = 32/50 (64%)

Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           +Y+L+++  H G  SGGHY AY +NF+ + WY F+D  +T +  ED   S
Sbjct: 763 IYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTS 812

Length = 823

>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 25/47 (53%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
           G YVYEL  ++IH G SA  GHY A+IK+  T EWY FND+ V  + 
Sbjct: 242 GSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMP 288

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 324

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 118 STSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITD 177
           S+      S +    Y Y+LF++++H G+   GHY AY +     +W+ F+D  +TR+++
Sbjct: 256 SSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQ-GDGQWFKFDDAMITRVSE 314

Query: 178 EDIHKSYGG 186
           E++ KS   
Sbjct: 315 EEVLKSQAY 323

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 135 YELFSIMIHSGS-ASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPA 189
           YEL ++++H G   + GHY + +K  S   W  F+D++V +I +  + + +G  P 
Sbjct: 237 YELVAVVVHIGGGPNHGHYVSIVK--SHGGWLLFDDETVEKIDENAVEEFFGDSPN 290

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 300

>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 125 PSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
            +     P  Y L  ++ H+G+ +GGHY++ +K   +  W  ++D  V + +
Sbjct: 347 NNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTWNVYDDSQVRKGS 396

Length = 415

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIK--NFSTDEWYCFNDQSVTRITDEDIHKSYG 185
           GP  YEL + + H G S   GHY A+IK       +W  FND+ V    D    K  G
Sbjct: 248 GPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLG 305

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 7/47 (14%)

Query: 134 VYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED 179
           VY LF++++HSG + S GHY AY++      W  F+D  V    ++D
Sbjct: 271 VYRLFAVVMHSGATISSGHYTAYVR------WLLFDDSEVKVTEEKD 311

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 332

>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 21/76 (27%)

Query: 134 VYELFSIMIHSGSAS-GGHYYAYIKNFS--------------------TDEWYCFNDQSV 172
            Y L+++++HSG +S  GHY+ Y ++ +                    +  WY FND  V
Sbjct: 242 HYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRV 301

Query: 173 TRITDEDIHKSYGGGP 188
           T  + E +       P
Sbjct: 302 TFSSFESVQNVTSRFP 317

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 327

>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19

 Score = 39.0 bits (91), Expect = 0.001
 Identities = 36/185 (19%), Positives = 58/185 (31%), Gaps = 40/185 (21%)

Query: 27  DFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFR--LDYGVRKGAESNQASTNQDEEHC 84
            FS  TS N     L+   S+   S  +  + TF   L   +       +  T    + C
Sbjct: 88  PFSCGTSRNSV--SLLYTLSLPLGSTKTSKESTFLQLLKRSL-----DLEKVTKAWCDTC 140

Query: 85  EENQLDPSVSNPVITPYNGDVDEGI------------DISHPEP--------PSTSATKD 124
            + Q     ++  I      +   +            DI+   P         S  A   
Sbjct: 141 CKYQPLEQTTS--IRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDH 198

Query: 125 PSMNA----KGPYVYELFSIMIH-SGSASGGHY---YAYIKNFST-DEWYCFNDQSVTRI 175
             +      +  Y YEL   +   + S+ G H       +   ST   WY FND  VT +
Sbjct: 199 DKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPV 258

Query: 176 TDEDI 180
           ++   
Sbjct: 259 SELAY 263

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 268

>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 20/69 (28%)

Query: 133 YVYELFSIMIHSGSASGGHYYAY--------------------IKNFSTDEWYCFNDQSV 172
            +Y L ++++H GS S GHY  Y                      + ++  W+  +D +V
Sbjct: 161 VLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTV 220

Query: 173 TRITDEDIH 181
             +++ ++ 
Sbjct: 221 KEVSESEVL 229

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 240

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.97
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.97
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.97
KOG1865|consensus	545		99.96
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.96
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.96
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.95
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.95
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.94
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.94
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.94
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.94
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.93
KOG4598|consensus	1203		99.93
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.92
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.92
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.92
KOG1866|consensus	944		99.92
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.92
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	99.91
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	99.91
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.9
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.89
KOG1867|consensus	492		99.89
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.86
KOG1870|consensus	842		99.86
KOG1872|consensus	473		99.84
KOG0944|consensus	763		99.82
KOG1868|consensus	653		99.79
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.79
KOG1864|consensus	587		99.78
KOG1873|consensus	877		99.77
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	99.73
KOG1863|consensus	1093		99.68
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.54
KOG1871|consensus	420		99.53
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	99.44
KOG2026|consensus	442		98.82
KOG1275|consensus	1118		98.12
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	91.35
PF05408	193	Peptidase_C28: Foot-and-mouth virus L-proteinase;	86.37

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.97  E-value=2.4e-30  Score=235.91  Aligned_cols=119  Identities=24%  Similarity=0.336  Sum_probs=107.4

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|+..|.++|++|+||||||.|+...+...|+++.|+||..|||.+|+.                           
T Consensus       184 ~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~---------------------------  236 (305)
T cd02657         184 DAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT---------------------------  236 (305)
T ss_pred             CceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC---------------------------
Confidence            45689999999999999999999999988788999999999999999999942                           


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                                                                      .+..|+|+|||+|.| ++.+|||+||+|...+
T Consensus       237 ------------------------------------------------~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~  268 (305)
T cd02657         237 ------------------------------------------------PSGYYELVAVITHQGRSADSGHYVAWVRRKND  268 (305)
T ss_pred             ------------------------------------------------CCCcEEEEEEEEecCCCCCCcEEEEEEEcCCC
Confidence                                                            135899999999999 7999999999999655


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~  196 (280)
                      ++||+|||+.|+++++++|++.+||+. .+||+|+|
T Consensus       269 ~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y  304 (305)
T cd02657         269 GKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLY  304 (305)
T ss_pred             CeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEE
Confidence            999999999999999999998777665 89999954

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.97  E-value=7.2e-30  Score=235.69  Aligned_cols=142  Identities=20%  Similarity=0.268  Sum_probs=108.1

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|++.|.++|+||+||||||.|+..++...|+++.|.||..|||..++.......                     
T Consensus       163 ~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~~~~~~~~---------------------  221 (327)
T cd02664         163 LQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRVESKSSES---------------------  221 (327)
T ss_pred             ccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCcccccccccc---------------------
Confidence            45789999999999999999999999998888999999999999999998853210000                     


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC-
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS-  160 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~-  160 (280)
                                       +......+..+.              .........|+|+|||+|.| ++++|||+||+|... 
T Consensus       222 -----------------~~~~~~~~~~~~--------------~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~  270 (327)
T cd02664         222 -----------------PLEKKEEESGDD--------------GELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTD  270 (327)
T ss_pred             -----------------cccccccccccc--------------ccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCc
Confidence                             000000000000              00123467999999999999 689999999999853 


Q ss_pred             -------------------CCCeEEecCceeEEeChhhhhhhcCCC-CCeEEEEEe
Q psy18082        161 -------------------TDEWYCFNDQSVTRITDEDIHKSYGGG-PARGYYSGF  196 (280)
Q Consensus       161 -------------------~~~W~~fnD~~V~~v~~~~V~~~~gg~-~~~aY~L~~  196 (280)
                                         ++.||+|||+.|+.++.++|.+..+++ ..+||+|||
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY  326 (327)
T cd02664         271 ADSTGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFY  326 (327)
T ss_pred             cccccccccccccccccCCCCCEEEEeCCceEECCHHHHHHhhCCCCCCCEEEEEe
Confidence                               379999999999999999998744433 389999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.97  E-value=1.2e-29  Score=231.50  Aligned_cols=121  Identities=18%  Similarity=0.305  Sum_probs=106.0

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|+..|.++|++|+||||||.|+...+...|++..|.||..|+|.+++..                          
T Consensus       176 ~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~--------------------------  229 (300)
T cd02663         176 LQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFNTTDD--------------------------  229 (300)
T ss_pred             ceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccccccc--------------------------
Confidence            457899999999999999999999999876778999999999999999877211                          


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                                                                   .......|+|+|||+|.| ++++|||+||+|.  +
T Consensus       230 ---------------------------------------------~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~--~  262 (300)
T cd02663         230 ---------------------------------------------AENPDRLYELVAVVVHIGGGPNHGHYVSIVKS--H  262 (300)
T ss_pred             ---------------------------------------------cCCCCeEEEEEEEEEEecCCCCCCceEEEEEC--C
Confidence                                                         012346999999999999 6999999999999  8


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCC--CeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGP--ARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~--~~aY~L~~  196 (280)
                      ++||+|||+.|+++++++|.+.+|+..  .+||+|||
T Consensus       263 ~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY  299 (300)
T cd02663         263 GGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFY  299 (300)
T ss_pred             CcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEe
Confidence            999999999999999999998877643  89999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=99.96  E-value=8.3e-30  Score=240.50  Aligned_cols=116  Identities=20%  Similarity=0.369  Sum_probs=104.0

Q ss_pred             CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082          2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE   81 (280)
Q Consensus         2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
                      ..+.+.|++.|.++|+||+||||||++    +...||+..|.||+.|||.|||+.                         
T Consensus       294 ~~v~A~K~lti~raPnVLTi~LKRF~~----~~~gKI~K~I~fPE~LDl~PyMS~-------------------------  344 (545)
T KOG1865|consen  294 QKVPASKQLTIHRAPNVLTLHLKRFSN----GTGGKISKPVSFPETLDLQPYMSQ-------------------------  344 (545)
T ss_pred             hhCcccceeeeecCCceEEEeeehhcc----CcccccccccCCcccccccccccC-------------------------
Confidence            357789999999999999999999975    677899999999999999999753                         


Q ss_pred             hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC
Q psy18082         82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS  160 (280)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~  160 (280)
                                                                    ....+..|.|||||+|.| +.++|||+||||. .
T Consensus       345 ----------------------------------------------~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks-~  377 (545)
T KOG1865|consen  345 ----------------------------------------------PNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKS-Q  377 (545)
T ss_pred             ----------------------------------------------CCCCCceEEEEEEEEeccccccCCceEEEEEc-C
Confidence                                                          133568999999999999 9999999999999 6


Q ss_pred             CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        161 TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       161 ~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      +|.||+|||+.|+.++.+.|++.      .||||||.|+
T Consensus       378 ~g~Wy~~DDS~V~~~~~~~VLsq------~AYmLfY~R~  410 (545)
T KOG1865|consen  378 NGQWYKMDDSEVTQSSIESVLSQ------QAYILFYARK  410 (545)
T ss_pred             CCceEEccCceeeeccccceecc------cceEEEEEee
Confidence            89999999999999999999874      6999977765

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.96  E-value=2.1e-29  Score=232.16  Aligned_cols=123  Identities=24%  Similarity=0.323  Sum_probs=106.4

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ++.++|+..|.+||++|+||||||.|+..++...|++..|.||..|||.+||.+.                         
T Consensus       185 ~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-------------------------  239 (324)
T cd02668         185 KTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGEYLAES-------------------------  239 (324)
T ss_pred             eeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechhhcccc-------------------------
Confidence            4578899999999999999999999999888999999999999999999995321                         


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                                                                    ......|+|+|||+|.| ++++|||+||+|+..+
T Consensus       240 ----------------------------------------------~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~  273 (324)
T cd02668         240 ----------------------------------------------DEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQT  273 (324)
T ss_pred             ----------------------------------------------cCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCC
Confidence                                                          12356899999999999 6899999999999667


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCC---------------CCCeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGG---------------GPARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg---------------~~~~aY~L~~  196 (280)
                      ++||+|||+.|++++.+.|...++.               .+..||||+|
T Consensus       274 ~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~y  323 (324)
T cd02668         274 GEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVY  323 (324)
T ss_pred             CcEEEEECCceEEcCHHHhhcccccccccccccccCCCccccCceEEEEe
Confidence            9999999999999999999764441               1278999954

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.96  E-value=2.3e-29  Score=220.44  Aligned_cols=109  Identities=27%  Similarity=0.481  Sum_probs=96.9

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      +.++|+..|.+||++|+||||||.|+.  +...|+++.|+||..|  .                                
T Consensus       117 ~~~~~~~~i~~lP~vL~i~LkRF~~~~--~~~~Ki~~~v~FP~~l--~--------------------------------  160 (228)
T cd02665         117 VKSGQERWFTELPPVLTFELSRFEFNQ--GRPEKIHDKLEFPQII--Q--------------------------------  160 (228)
T ss_pred             hhhhhhhhhhhCChhhEEEeEeeEEcC--CccEECCEEEEeeCcc--C--------------------------------
Confidence            346788899999999999999999986  6788999999999986  1                                


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                      ...|+|+|||+|.|++++|||++|+|+..+++
T Consensus       161 ------------------------------------------------~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~  192 (228)
T cd02665         161 ------------------------------------------------QVPYELHAVLVHEGQANAGHYWAYIYKQSRQE  192 (228)
T ss_pred             ------------------------------------------------CceeEEEEEEEecCCCCCCEEEEEEEcCCCCE
Confidence                                                            23799999999999999999999999867899


Q ss_pred             eEEecCceeEEeChhhhhh-hcCCCC-CeEEEEEe
Q psy18082        164 WYCFNDQSVTRITDEDIHK-SYGGGP-ARGYYSGF  196 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~-~~gg~~-~~aY~L~~  196 (280)
                      ||+|||+.|++++.++|.+ .|||+. .+||+|+|
T Consensus       193 W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfY  227 (228)
T cd02665         193 WEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMY  227 (228)
T ss_pred             EEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEE
Confidence            9999999999999999976 678776 89999954

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.95  E-value=1.8e-28  Score=221.59  Aligned_cols=118  Identities=22%  Similarity=0.395  Sum_probs=99.8

Q ss_pred             EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082          6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE   85 (280)
Q Consensus         6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (280)
                      ++|+..|.++|++|+||||||.|+.. +...|++..|.||..|||.+||.+...                          
T Consensus       140 a~k~~~i~~~P~~Lii~LkRF~~~~~-~~~~Ki~~~v~fP~~Ldl~~~~~~~~~--------------------------  192 (279)
T cd02667         140 AKKQYLISKLPPVLVIHLKRFQQPRS-ANLRKVSRHVSFPEILDLAPFCDPKCN--------------------------  192 (279)
T ss_pred             eeeEeEhhhCCCeEEEEEeccccCcc-cCceecCceEeCCCccchhhccCcccc--------------------------
Confidence            68999999999999999999999875 467899999999999999999654210                          


Q ss_pred             cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCC-----
Q psy18082         86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFS-----  160 (280)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~-----  160 (280)
                                               .               ........|+|+|||+|.|+.++|||+||+|...     
T Consensus       193 -------------------------~---------------~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~  232 (279)
T cd02667         193 -------------------------S---------------SEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRL  232 (279)
T ss_pred             -------------------------c---------------cccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCcccccc
Confidence                                     0               0122357999999999999669999999999853     


Q ss_pred             ----------------CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        161 ----------------TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       161 ----------------~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                                      +++||+|||+.|++++.++|++      ..||+|+|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~~~v~~------~~aYiLfY  278 (279)
T cd02667         233 SDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLK------SEAYLLFY  278 (279)
T ss_pred             ccccccccccccCCCCCCcEEEEECCccEECCHHHhcc------CCcEEEEe
Confidence                            6899999999999999999865      36999955

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.95  E-value=7e-28  Score=222.24  Aligned_cols=136  Identities=29%  Similarity=0.467  Sum_probs=111.0

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..++|+..|.++|++|+|||+||.|+..++...|++..|.||..|||.+|+......+.                     
T Consensus       181 ~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~~~~~~---------------------  239 (334)
T cd02659         181 VDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEPYTEKGLAKKE---------------------  239 (334)
T ss_pred             ccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcccccccccccc---------------------
Confidence            36788999999999999999999999888889999999999999999999755321100                     


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                             .                ...........|+|+|||+|.|+..+|||+||+|...++.
T Consensus       240 -----------------------~----------------~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~  280 (334)
T cd02659         240 -----------------------G----------------DSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGK  280 (334)
T ss_pred             -----------------------c----------------cccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCc
Confidence                                   0                0000123467999999999999889999999999966899


Q ss_pred             eEEecCceeEEeChhhhh-hhcCCCC---------------CeEEEEEeecc
Q psy18082        164 WYCFNDQSVTRITDEDIH-KSYGGGP---------------ARGYYSGFEDK  199 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~-~~~gg~~---------------~~aY~L~~~~~  199 (280)
                      ||+|||+.|+++++++|+ .++||..               .+||||+|.++
T Consensus       281 W~~~nD~~V~~i~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~ay~l~Y~~~  332 (334)
T cd02659         281 WYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYERK  332 (334)
T ss_pred             eEEEeCcccEECCHHHHHHHcCCCccccccccccccccccccceEEEEEEEe
Confidence            999999999999999996 4778762               57999965543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.94  E-value=3.3e-27  Score=226.08  Aligned_cols=117  Identities=15%  Similarity=0.136  Sum_probs=99.5

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ..++|++.|++||+||+||||||.|+.  +...|+++.|.||.. |||.+|+.+..                        
T Consensus       321 ~~a~k~~~I~~LP~vLiihLKRF~~~~--~~~~K~~t~V~FP~~~LDm~~y~~~~~------------------------  374 (440)
T cd02669         321 KDSLKRYLISRLPKYLIFHIKRFSKNN--FFKEKNPTIVNFPIKNLDLSDYVHFDK------------------------  374 (440)
T ss_pred             ccceEEEEEeeCCcEEEEEEecccCCC--CccccCCCEEECCCCccchhhhhCccc------------------------
Confidence            346899999999999999999998874  677899999999997 89999964210                        


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecC-CCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSA-SGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~-~sGHY~~yir~~~~  161 (280)
                                                                  .....+..|+|+|||+|.|++ ++|||+||+|+..+
T Consensus       375 --------------------------------------------~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~  410 (440)
T cd02669         375 --------------------------------------------PSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKST  410 (440)
T ss_pred             --------------------------------------------cccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCC
Confidence                                                        012245799999999999966 99999999998668


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      |+||+|||+.|+++++++|+.      ..||+|+|
T Consensus       411 ~~W~~fdD~~V~~v~~~~v~~------~eaYll~Y  439 (440)
T cd02669         411 NKWFEIQDLNVKEVLPQLIFL------SESYIQIW  439 (440)
T ss_pred             CeEEEEECCeeeEcCHHHhcc------CCceEEEe
Confidence            999999999999999999965      36999954

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.94  E-value=9.4e-27  Score=214.22  Aligned_cols=124  Identities=21%  Similarity=0.363  Sum_probs=102.6

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...+.|+..|.+||++|+||||||.|+.. +...|++..|.||.+|||.+||......                      
T Consensus       204 ~~~~~~~~~i~~lP~~Lii~lkRf~~~~~-~~~~K~~~~v~fp~~Ldl~~~~~~~~~~----------------------  260 (328)
T cd02660         204 TQEATKQLSIKKLPPVLCFQLKRFEHSLN-KTSRKIDTYVQFPLELNMTPYTSSSIGD----------------------  260 (328)
T ss_pred             ccceEEEEEecCCCceeEEEEEeEEecCC-CCCcCCCcEEeCCCEechhhhccccccc----------------------
Confidence            34788999999999999999999999876 6778999999999999999997643100                      


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                            ...                  .........|+|+|||+|.|+..+|||+||+|.. ++
T Consensus       261 ----------------------~~~------------------~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~-~~  299 (328)
T cd02660         261 ----------------------TQD------------------SNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQG-DG  299 (328)
T ss_pred             ----------------------ccc------------------cccCCCCceEEEEEEEEeeccCCCCcEEEEEECC-CC
Confidence                                  000                  0013346799999999999988899999999993 59


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      +||+|||+.|+++++++|+.      ..||+|+|
T Consensus       300 ~W~~~nD~~V~~~~~~~v~~------~~ayil~Y  327 (328)
T cd02660         300 QWFKFDDAMITRVSEEEVLK------SQAYLLFY  327 (328)
T ss_pred             cEEEEECCeeEECCHHHhcC------CCcEEEEe
Confidence            99999999999999999975      36999954

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.94  E-value=2.4e-26  Score=212.53  Aligned_cols=115  Identities=21%  Similarity=0.302  Sum_probs=96.9

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCc----ceeeccccceeccceecCCCCCCCcccccccccccccccccccCCC
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTT----SENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTN   78 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~----~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (280)
                      ...++|+..|.++|++|+||||||.|+...    +...|+++.|.||..|||.+++..                      
T Consensus       209 ~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L~~~~~~~~----------------------  266 (332)
T cd02671         209 YTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTK----------------------  266 (332)
T ss_pred             ceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccccccccccCC----------------------
Confidence            467899999999999999999999987532    457899999999999999877311                      


Q ss_pred             CcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEE
Q psy18082         79 QDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIK  157 (280)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir  157 (280)
                                                                         .....|+|+|||+|.| ++++|||+||+|
T Consensus       267 ---------------------------------------------------~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr  295 (332)
T cd02671         267 ---------------------------------------------------PKNDVYRLFAVVMHSGATISSGHYTAYVR  295 (332)
T ss_pred             ---------------------------------------------------CCCCeEEEEEEEEEcCCCCCCCeEEEEEE
Confidence                                                               1246899999999999 689999999999


Q ss_pred             cCCCCCeEEecCceeEEeChhhhhhhc-CC--CCCeEEEEEe
Q psy18082        158 NFSTDEWYCFNDQSVTRITDEDIHKSY-GG--GPARGYYSGF  196 (280)
Q Consensus       158 ~~~~~~W~~fnD~~V~~v~~~~V~~~~-gg--~~~~aY~L~~  196 (280)
                            ||+|||+.|+.++++++.+.. +.  ...+||+|||
T Consensus       296 ------W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY  331 (332)
T cd02671         296 ------WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFY  331 (332)
T ss_pred             ------EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEE
Confidence                  999999999999999987643 22  2279999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.94  E-value=8.3e-27  Score=205.86  Aligned_cols=135  Identities=15%  Similarity=0.105  Sum_probs=92.7

Q ss_pred             cccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhccccCCC
Q psy18082         12 SSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQLDP   91 (280)
Q Consensus        12 I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (280)
                      |.++|++|+||||||.|+.  +...|+++.|.||..|||.+|+.+....-..                    ++. +.  
T Consensus        95 i~~lP~vLiIhLKRF~~~~--~~~~Kl~~~I~fP~~Ldl~~~~~~~~~~~~~--------------------~~~-~~--  149 (241)
T cd02670          95 FAKAPSCLIICLKRYGKTE--GKAQKMFKKILIPDEIDIPDFVADDPRACSK--------------------CQL-EC--  149 (241)
T ss_pred             hhhCCCeEEEEEEccccCC--CcceeCCcEECCCCcCCchhhcccccccccc--------------------ccc-cc--
Confidence            8999999999999999886  6789999999999999999997553100000                    000 00  


Q ss_pred             CCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC----------
Q psy18082         92 SVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS----------  160 (280)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~----------  160 (280)
                                 ........               .........|+|+|||+|+| ++++|||+||+|...          
T Consensus       150 -----------~~~~~~~~---------------~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~  203 (241)
T cd02670         150 -----------RVCYDDKD---------------FSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEA  203 (241)
T ss_pred             -----------cccccccc---------------ccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCC
Confidence                       00000000               00123457999999999999 799999999999964          


Q ss_pred             -CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEee
Q psy18082        161 -TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFE  197 (280)
Q Consensus       161 -~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~  197 (280)
                       ++.|++|||..|+.+....+...-......||+|||+
T Consensus       204 ~~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq  241 (241)
T cd02670         204 YNAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ  241 (241)
T ss_pred             CCCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence             3899999999998876543210000112589999653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.93  E-value=7.8e-26  Score=200.22  Aligned_cols=100  Identities=16%  Similarity=0.338  Sum_probs=88.8

Q ss_pred             EEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhcccc
Q psy18082          9 DALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEENQ   88 (280)
Q Consensus         9 ~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (280)
                      +..|.++|++|+||||||.|+.. +...|++..|.||..|  .                                     
T Consensus       120 ~~~i~~lP~vLii~LkRF~~~~~-~~~~K~~~~v~fp~~l--~-------------------------------------  159 (240)
T cd02662         120 QTVIVRLPQILCIHLSRSVFDGR-GTSTKNSCKVSFPERL--P-------------------------------------  159 (240)
T ss_pred             eEEeecCCcEEEEEEEEEEEcCC-CceeeeccEEECCCcc--C-------------------------------------
Confidence            67899999999999999999987 8899999999999987  1                                     


Q ss_pred             CCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcC---------
Q psy18082         89 LDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNF---------  159 (280)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~---------  159 (280)
                                                                 ...|+|+|||+|.|+..+|||+||+|.+         
T Consensus       160 -------------------------------------------~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~  196 (240)
T cd02662         160 -------------------------------------------KVLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPG  196 (240)
T ss_pred             -------------------------------------------CceEEEEEEEEEeccCCCceEEEEEeCCCcccccccc
Confidence                                                       2489999999999977999999999996         


Q ss_pred             -----------CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        160 -----------STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       160 -----------~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                                 ..+.||+|||+.|+++++++|+.     ...||+|||
T Consensus       197 ~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~-----~~~aY~LfY  239 (240)
T cd02662         197 SFVRMREGPSSTSHPWWRISDTTVKEVSESEVLE-----QKSAYMLFY  239 (240)
T ss_pred             cccccccccCccCCCEEEEechheEEeCHHHHhh-----CCCEEEEEe
Confidence                       34899999999999999999952     147999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=99.93  E-value=5.4e-27  Score=224.36  Aligned_cols=187  Identities=29%  Similarity=0.425  Sum_probs=123.2

Q ss_pred             EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccc--cccccccccccccCCCCcchh
Q psy18082          6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRL--DYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      +-|-+.|..+|-+|.||||||.||.+|..++|++++|.||..|||..|...+....+  .+...-..+..........+.
T Consensus       246 ahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  325 (1203)
T KOG4598|consen  246 AHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSENEEDDMELGS  325 (1203)
T ss_pred             hhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCcchhHhhhcccccccccccccccCC
Confidence            457789999999999999999999999999999999999999999999544210000  000000000000000111111


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                      +...........+..-..+.++..+++++       .+..+......++..|+|+||.+|+|++.+|||++|||+..++.
T Consensus       326 ~n~~~~~~~~~s~~~~~~~~n~~~g~~~~-------~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~~~  398 (1203)
T KOG4598|consen  326 PNPKRCTPGVQSPNRYQGSENVCVGQPID-------HAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQDR  398 (1203)
T ss_pred             CCcccCcccccCcccccCccccccCCcCc-------hhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCcCc
Confidence            11111111111111111222233344333       11122223456789999999999999999999999999998999


Q ss_pred             eEEecCceeEEeChhhhhhhcCCCC-------CeEEEEEeeccc
Q psy18082        164 WYCFNDQSVTRITDEDIHKSYGGGP-------ARGYYSGFEDKV  200 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~~~gg~~-------~~aY~L~~~~~~  200 (280)
                      ||+|||..|+.++..+|.+.|||.+       .+|||| +|+++
T Consensus       399 w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnayml-myr~i  441 (1203)
T KOG4598|consen  399 WYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYML-MYRRI  441 (1203)
T ss_pred             eEEecCccccccCHHHHHHhhCCCCCCccccCcchhhh-hhhhc
Confidence            9999999999999999999999865       579999 55544

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.92  E-value=3.2e-25  Score=201.12  Aligned_cols=111  Identities=23%  Similarity=0.432  Sum_probs=96.7

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..++|+..|.++|++|+|||+||.|+    ...|++..|.||..|||.+|+...                          
T Consensus       192 ~~~~~~~~i~~~P~iL~i~l~Rf~~~----~~~Ki~~~v~f~~~L~l~~~~~~~--------------------------  241 (304)
T cd02661         192 VKASKQLTIHRAPNVLTIHLKRFSNF----RGGKINKQISFPETLDLSPYMSQP--------------------------  241 (304)
T ss_pred             cceEEEEEEecCCcEEEEEEeccccC----CccccCCeEecCCeechhhccccC--------------------------
Confidence            45789999999999999999999887    457999999999999999995331                          


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTD  162 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~  162 (280)
                                                                   ......|+|+|||+|.| ++.+|||++|+|. .++
T Consensus       242 ---------------------------------------------~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~-~~~  275 (304)
T cd02661         242 ---------------------------------------------NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKS-SNG  275 (304)
T ss_pred             ---------------------------------------------CCCCceeeEEEEEEECCCCCCCcCCEEEEEC-CCC
Confidence                                                         12357999999999999 5699999999998 578


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      +||+|||+.|+++++++|++.      .||+|+|
T Consensus       276 ~W~~~nD~~V~~v~~~~v~~~------~aYil~Y  303 (304)
T cd02661         276 KWYNMDDSKVSPVSIETVLSQ------KAYILFY  303 (304)
T ss_pred             CEEEEeCCeeEECCHHHhcCC------CcEEEEe
Confidence            999999999999999999753      7999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.92  E-value=1.3e-24  Score=189.90  Aligned_cols=116  Identities=26%  Similarity=0.451  Sum_probs=98.2

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE   81 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
                      ...+.++..|.++|++|+|||+||.|+.  +...|++..|.||. .|||.+|+...                        
T Consensus       113 ~~~~~~~~~i~~lP~iLii~l~R~~~~~--~~~~K~~~~v~~~~~~l~l~~~~~~~------------------------  166 (230)
T cd02674         113 KRKATKKLTISRLPKVLIIHLKRFSFSR--GSTRKLTTPVTFPLNDLDLTPYVDTR------------------------  166 (230)
T ss_pred             ccceEEEEEEecCChhhEeEhhheecCC--CCcccCCceEeccccccccccccCcc------------------------
Confidence            3467889999999999999999999876  67889999999996 58999984110                        


Q ss_pred             hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCC
Q psy18082         82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFST  161 (280)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~  161 (280)
                                                                    .......|+|+|||+|.|+..+|||+||+|...+
T Consensus       167 ----------------------------------------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~  200 (230)
T cd02674         167 ----------------------------------------------SFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNET  200 (230)
T ss_pred             ----------------------------------------------cCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCC
Confidence                                                          1234678999999999996699999999999656


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      ++|++|||+.|++++.++|.      ...||+|+|
T Consensus       201 ~~W~~fnD~~V~~i~~~~~~------~~~~YlL~Y  229 (230)
T cd02674         201 NDWYKFDDSRVTKVSESSVV------SSSAYILFY  229 (230)
T ss_pred             CceEEEcCCeEEEcCHHHcc------CCCceEEEe
Confidence            99999999999999999982      257999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.92  E-value=1e-24  Score=199.43  Aligned_cols=105  Identities=23%  Similarity=0.269  Sum_probs=91.6

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|+..|.+||++|+||||||.|+. ++...|++..|.||..|  .                               
T Consensus       203 ~~~a~k~~~i~~lP~vLii~LkRF~~~~-~~~~~Ki~~~v~~p~~l--~-------------------------------  248 (311)
T cd02658         203 KTTATKTTGFKTFPDYLVINMKRFQLLE-NWVPKKLDVPIDVPEEL--G-------------------------------  248 (311)
T ss_pred             cccEEEEEEeecCCceEEEEeEEEEecC-CCceEeeccccccCCcC--C-------------------------------
Confidence            4678999999999999999999999974 36788999999999766  1                               


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC--
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF--  159 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~--  159 (280)
                                                                       +..|+|+|||+|.| ++++|||+||+|..  
T Consensus       249 -------------------------------------------------~~~Y~L~~vI~H~G~~~~~GHY~~~vk~~~~  279 (311)
T cd02658         249 -------------------------------------------------PGKYELIAFISHKGTSVHSGHYVAHIKKEID  279 (311)
T ss_pred             -------------------------------------------------CCcEEEEEEEEccCCCCCCcceEEEEeCCCC
Confidence                                                             24799999999999 69999999999995  


Q ss_pred             CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        160 STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       160 ~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      .+++||+|||+.|++++..+|..      ..||+|||
T Consensus       280 ~~~~W~~fnD~~V~~~~~~~~~~------~~~YilfY  310 (311)
T cd02658         280 GEGKWVLFNDEKVVASQDPPEMK------KLGYIYFY  310 (311)
T ss_pred             CCCCEEEecCceeEECCcccccC------CcceEEEE
Confidence            24999999999999999988843      47999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1866|consensus

Probab=99.92  E-value=2.2e-26  Score=221.58  Aligned_cols=143  Identities=24%  Similarity=0.358  Sum_probs=111.6

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      +++-.|+++|.+||++|+||||||.||..+...+|-+..++||.+|||.||+..+...-+                    
T Consensus       275 K~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a~~e--------------------  334 (944)
T KOG1866|consen  275 KVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVAKLE--------------------  334 (944)
T ss_pred             hhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhhhhc--------------------
Confidence            455568999999999999999999999999999999999999999999999765431100                    


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCC--
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFS--  160 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~--  160 (280)
                                         .+.++.|..               ...+..+.+|+|+||++|+|-+++||||+||+...  
T Consensus       335 -------------------~~~~~~g~~---------------~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~  380 (944)
T KOG1866|consen  335 -------------------GENVESGQQ---------------LEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGE  380 (944)
T ss_pred             -------------------cccCCcCcc---------------cccccCcceeEEEEEEEecccccCcchhhhhhhhccC
Confidence                               000011100               01234678999999999999999999999999853  


Q ss_pred             -CCCeEEecCceeEEeChhhhhh-hcCCCC-------------CeEEEEEeeccc
Q psy18082        161 -TDEWYCFNDQSVTRITDEDIHK-SYGGGP-------------ARGYYSGFEDKV  200 (280)
Q Consensus       161 -~~~W~~fnD~~V~~v~~~~V~~-~~gg~~-------------~~aY~L~~~~~~  200 (280)
                       .++||+|||-.|++++..++.. +|||.-             =+||+|| |+|.
T Consensus       381 ~~~kWykfnD~~Vte~~~n~me~~cfGGey~q~~~~~~~rrR~WNAYmlF-Yer~  434 (944)
T KOG1866|consen  381 DGNKWYKFNDGDVTECKMNEMENECFGGEYMQMMKRMSYRRRWWNAYMLF-YERM  434 (944)
T ss_pred             CCCceEeccCccccccchhhHHHHhhcchhhhcccccchHHHhhhhHHHH-HHHh
Confidence             4799999999999999999865 898742             2689994 4444

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=7.6e-26  Score=215.13  Aligned_cols=116  Identities=25%  Similarity=0.326  Sum_probs=99.9

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      .|+|++.||++|.||+||||||++.+  ..+.|+.+.|+||.. |||+.+...                           
T Consensus       706 qasKqmelwrlP~iLiihLkRFss~r--sfrdKiddlVeyPiddldLs~~~~~---------------------------  756 (823)
T COG5560         706 QASKQMELWRLPMILIIHLKRFSSVR--SFRDKIDDLVEYPIDDLDLSGVEYM---------------------------  756 (823)
T ss_pred             hhhhhhhhhcCChheeeehhhhhhcc--cchhhhhhhhccccccccccceEEe---------------------------
Confidence            47999999999999999999998665  688999999999995 999887211                           


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                  .......|+||||=+|.|.+.+|||++|+|++.+++
T Consensus       757 --------------------------------------------~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~  792 (823)
T COG5560         757 --------------------------------------------VDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNG  792 (823)
T ss_pred             --------------------------------------------ecCcceEEEeeeccccccccCCcceeeeeecccCCc
Confidence                                                        011237999999999999999999999999999999


Q ss_pred             eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      ||+|||+.|++|++++...      .+||+||+.++
T Consensus       793 wy~fdDsritevdped~vt------ssaYvLFyrrk  822 (823)
T COG5560         793 WYLFDDSRITEVDPEDSVT------SSAYVLFYRRK  822 (823)
T ss_pred             eEEecCccccccCcccccc------ceeEEEEEEec
Confidence            9999999999999988533      47999977664

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.91  E-value=2.5e-24  Score=189.57  Aligned_cols=117  Identities=26%  Similarity=0.422  Sum_probs=94.3

Q ss_pred             EEecccCCcceEEEEEEEEEeCCcceeeccccceecc-ceecCCCCCCCcccccccccccccccccccCCCCcchhhccc
Q psy18082          9 DALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVT-SVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEEN   87 (280)
Q Consensus         9 ~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (280)
                      +..|.++|++|+|||+||.|+..++...|+...|.|| ..|||.+++.....                            
T Consensus       152 ~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~----------------------------  203 (269)
T PF00443_consen  152 QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNS----------------------------  203 (269)
T ss_dssp             EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCC----------------------------
T ss_pred             ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccc----------------------------
Confidence            5789999999999999999999888899999999999 69999998543210                            


Q ss_pred             cCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEe
Q psy18082         88 QLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCF  167 (280)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~f  167 (280)
                                                              .......|+|+|||+|.|+..+|||+||+|+..+++|++|
T Consensus       204 ----------------------------------------~~~~~~~Y~L~avi~H~G~~~~GHY~a~v~~~~~~~W~~~  243 (269)
T PF00443_consen  204 ----------------------------------------ECQSNVKYRLVAVIVHYGSADSGHYVAYVRDSDDGKWYKF  243 (269)
T ss_dssp             ----------------------------------------THTSSSEEEEEEEEEEESSTTSEEEEEEEEETTTTEEEEE
T ss_pred             ----------------------------------------cccccceeeehhhhccccccccceEEEeeccccCCeEEEe
Confidence                                                    0113579999999999998899999999999666789999


Q ss_pred             cCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        168 NDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       168 nD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      ||+.|++++.++|.+..   ...||+|+|
T Consensus       244 dD~~v~~~~~~~v~~~~---~~~~yll~Y  269 (269)
T PF00443_consen  244 DDSRVTEVSWEEVIKSS---NSTAYLLFY  269 (269)
T ss_dssp             ETTEEEEESHHHHCCGG---STCEEEEEE
T ss_pred             eCCceEECCHHHHhhcc---CCceEEEeC
Confidence            99999999999997632   257999954

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=99.91  E-value=4.2e-24  Score=189.67  Aligned_cols=62  Identities=26%  Similarity=0.574  Sum_probs=54.0

Q ss_pred             ceeEEEEEEEEEee-cCCCceEEEEEEcCC-CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        132 PYVYELFSIMIHSG-SASGGHYYAYIKNFS-TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       132 ~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~-~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      ...|+|+|||+|.| ++++|||+||+|... +++||+|||+.|+++++++|++.   ....||+|||
T Consensus       181 ~~~Y~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~---~~~~aYiLFY  244 (245)
T cd02673         181 DAKYSLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTN---ARSSGYLIFY  244 (245)
T ss_pred             CceEEEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhc---cCCceEEEEE
Confidence            35799999999999 689999999999865 68999999999999999999742   1257999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=6.6e-25  Score=211.93  Aligned_cols=119  Identities=24%  Similarity=0.363  Sum_probs=104.2

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      =..+.|-..+..|||||.||||||.||-.+....|||++.+||+++||.||+.....                       
T Consensus       366 lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da~-----------------------  422 (1089)
T COG5077         366 LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDAD-----------------------  422 (1089)
T ss_pred             chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchhh-----------------------
Confidence            345788899999999999999999999999999999999999999999999654310                       


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                                                  ........|.|+||++|+|.++.||||+++|...+|
T Consensus       423 --------------------------------------------ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg  458 (1089)
T COG5077         423 --------------------------------------------KSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDG  458 (1089)
T ss_pred             --------------------------------------------hhcccCcEEEEEEEEEeccccCCceEEEEeccccCC
Confidence                                                        012234799999999999999999999999987799


Q ss_pred             CeEEecCceeEEeChhhhhh-hcCCCC
Q psy18082        163 EWYCFNDQSVTRITDEDIHK-SYGGGP  188 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~-~~gg~~  188 (280)
                      .||+|||..|+++++.+|++ .|||..
T Consensus       459 ~WykfdDtrVtrat~kevleeNfGgd~  485 (1089)
T COG5077         459 RWYKFDDTRVTRATEKEVLEENFGGDH  485 (1089)
T ss_pred             CceeecceehhhHHHHHHHHHhcCCCC
Confidence            99999999999999999875 888754

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.89  E-value=6e-23  Score=178.08  Aligned_cols=127  Identities=27%  Similarity=0.393  Sum_probs=103.3

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...+.++..|.++|++|+|||+||.++.. +...|++..|.||..|++..++....                        
T Consensus       127 ~~~~~~~~~i~~lP~~L~i~l~R~~~~~~-~~~~k~~~~v~~~~~l~~~~~~~~~~------------------------  181 (255)
T cd02257         127 KQEATKRLKIKKLPPVLIIHLKRFSFNED-GTKEKLNTKVSFPLELDLSPYLSEGE------------------------  181 (255)
T ss_pred             ccceeEEEecccCCceeEEEeeceeeccc-cccccCCCeEeCCCcccCcccccccc------------------------
Confidence            45678999999999999999999998764 67889999999999999999853210                        


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                                                               ...........|+|+|||+|.| ++.+|||+||+|...+
T Consensus       182 -----------------------------------------~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~  220 (255)
T cd02257         182 -----------------------------------------KDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSD  220 (255)
T ss_pred             -----------------------------------------ccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCC
Confidence                                                     0001233467999999999999 5699999999999655


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      +.||+|||..|++++.++|... ++....||+|+|
T Consensus       221 ~~W~~~nD~~V~~v~~~~~~~~-~~~~~~~yll~Y  254 (255)
T cd02257         221 GKWYKFNDDKVTEVSEEEVLEF-GSLSSSAYILFY  254 (255)
T ss_pred             CceEEEeccccEEcCHHHhhhc-cCCCCceEEEEE
Confidence            9999999999999999998653 223368999965

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1867|consensus

Probab=99.89  E-value=1.1e-23  Score=202.31  Aligned_cols=123  Identities=20%  Similarity=0.346  Sum_probs=104.6

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ...+|++.|.+||.+|++|||||.+....... |+++.|.||..|+|.+||..+...                       
T Consensus       364 ~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~-ki~~~v~fp~~l~m~p~~~~~~~~-----------------------  419 (492)
T KOG1867|consen  364 QESTKQLTIRKLPAVLCLHLKRFEHSATGARE-KIDSYVSFPVLLNMKPYCSSEKLK-----------------------  419 (492)
T ss_pred             cccccccccccCCceeeeeecccccccccccc-ccCcccccchhhcCCccccccccc-----------------------
Confidence            46789999999999999999999988754344 999999999999999997542100                       


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                 .....+..|+|+|||+|+|++++|||+||+|.  .+.
T Consensus       420 -------------------------------------------~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~--~~~  454 (492)
T KOG1867|consen  420 -------------------------------------------SQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ--SGG  454 (492)
T ss_pred             -------------------------------------------cCCCCCceEEEEEEEEeccCCCCCceEEEEEe--CCC
Confidence                                                       01124689999999999999999999999999  889


Q ss_pred             eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecccc
Q psy18082        164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKVV  201 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~~~  201 (280)
                      ||+|||+.|+.+++++|++.      .||+|||.+...
T Consensus       455 ~~~~dDs~v~~~s~~eVl~~------~aylLFY~~~~~  486 (492)
T KOG1867|consen  455 WFKCDDSTVTKVSEEEVLSS------QAYLLFYTQEQV  486 (492)
T ss_pred             cEEEcCeEEEEeeHHHhhhc------hhhheehhHHhh
Confidence            99999999999999999874      799998777653

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.86  E-value=6.6e-22  Score=177.80  Aligned_cols=111  Identities=14%  Similarity=0.237  Sum_probs=88.6

Q ss_pred             ceEEEEEEecccCCc----ceEEEEEEEEEeCCc-----ceeeccccceeccceecCCCCCCCccccccccccccccccc
Q psy18082          3 PIVYKADALSSKHIK----LAIHQDKVVDFSGTT-----SENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESN   73 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~----vL~IhLkRF~fd~~~-----~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~   73 (280)
                      ...++|++.|++||+    ||+||||||.+....     ....|++..|.||..+++..++..                 
T Consensus       143 ~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~-----------------  205 (268)
T cd02672         143 YQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPKAIDHDKLVKNR-----------------  205 (268)
T ss_pred             ccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeecccccccchhhhcc-----------------
Confidence            356889999999999    999999999754321     235678889999988776554211                 


Q ss_pred             ccCCCCcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceE
Q psy18082         74 QASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHY  152 (280)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY  152 (280)
                                                                            .......|+|+|||+|.| +..+|||
T Consensus       206 ------------------------------------------------------~~~~~~~Y~L~gvV~hig~~~~~GHy  231 (268)
T cd02672         206 ------------------------------------------------------GQESIYKYELVGYVCEINDSSRGQHN  231 (268)
T ss_pred             ------------------------------------------------------CCCCCceEEEEEEEEEecCCCCCCcE
Confidence                                                                  011346899999999999 5599999


Q ss_pred             EEEEEcCC----CCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        153 YAYIKNFS----TDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       153 ~~yir~~~----~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      +||+|...    .++||.|||..|++|++            .||+|||
T Consensus       232 va~vk~~~~~~~~~~WylFND~~V~~vs~------------~aYiLfY  267 (268)
T cd02672         232 VVFVIKVNEESTHGRWYLFNDFLVTPVSE------------LAYILLY  267 (268)
T ss_pred             EEEEEccCCCCCCCcEEEecCeEEEEcCc------------hheeeec
Confidence            99999854    68999999999999998            5999965

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1870|consensus

Probab=99.86  E-value=1e-22  Score=207.75  Aligned_cols=114  Identities=22%  Similarity=0.338  Sum_probs=100.4

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      -|+|++.||+||+||+||||||+|.+  ....|+.+.|+||.. ||+++|+...                          
T Consensus       727 ~A~Kk~~lwrlPeiLiihLKrF~~~r--~~~~k~~~~v~fPi~~ld~s~~~~~~--------------------------  778 (842)
T KOG1870|consen  727 QATKKLDLWRLPEILIIHLKRFQYSR--ESSSKVKTKVEFPLGSLDLSEFVVNK--------------------------  778 (842)
T ss_pred             HHhhhhhhhhCCceEEEEeecceeec--hhhhhhCccccCCCcCCCcchhhccC--------------------------
Confidence            47899999999999999999999987  556999999999995 9999994321                          


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                     ....|+|+||.+|.|.+.+|||++|+|+..+++
T Consensus       779 -----------------------------------------------~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~  811 (842)
T KOG1870|consen  779 -----------------------------------------------EQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGK  811 (842)
T ss_pred             -----------------------------------------------ccceeeeeeeecccCCcCCcchhhhhhcCCCCc
Confidence                                                           127999999999999999999999999988999


Q ss_pred             eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      ||.|||+.|.++++++|..      ..||+|||+++
T Consensus       812 w~~fdDs~v~~~~~~~i~t------~~aY~Lfy~r~  841 (842)
T KOG1870|consen  812 WYLFDDSSVSEVDEDEIDT------EAAYVLFYRRL  841 (842)
T ss_pred             eEEeccccCCCCChhhccc------ccceEEEEEec
Confidence            9999999999999999854      47999966653

>KOG1872|consensus

Probab=99.84  E-value=4e-22  Score=185.28  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=119.2

Q ss_pred             CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCccc-----cccccccc----ccccc
Q psy18082          2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYT-----FRLDYGVR----KGAES   72 (280)
Q Consensus         2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~-----~~~~~~~~----~~~~~   72 (280)
                      .+..|.|.+.|.+||.+|.|+..||.|....+...|+-..|.||..||...+|++++.     .|.+.+..    .....
T Consensus       292 r~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r~~edkk~~~~~  371 (473)
T KOG1872|consen  292 RPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHRKVEDKKKEEDV  371 (473)
T ss_pred             CChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhhcCccchHHHHHHHHhcCCchhh
Confidence            3567889999999999999999999999999999999999999999999999999751     12111100    00000


Q ss_pred             cccCCCCcchhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCce
Q psy18082         73 NQASTNQDEEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGH  151 (280)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGH  151 (280)
                      ..+....              ++.+     .++..       ++....+    .........|+|.|||.|.| +..+||
T Consensus       372 ~~k~~~~--------------~~~~-----~~~~~-------e~~~~~~----~~~s~~~g~y~l~~vithkgrss~sgh  421 (473)
T KOG1872|consen  372 MPKVKGA--------------QERL-----KEVPL-------EGMYNKS----GGKSRNSGLYDLQLVITHKGRSSKSGH  421 (473)
T ss_pred             cccccCc--------------Cccc-----ccccc-------cchhccc----cccccccceeeeeEeeeccccccCCCc
Confidence            0000000              0000     00000       0000000    00112267999999999999 999999


Q ss_pred             EEEEEEcCCCCCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeecc
Q psy18082        152 YYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFEDK  199 (280)
Q Consensus       152 Y~~yir~~~~~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~~  199 (280)
                      |++|+|. +.++|++|||..|+.|..+.|+...||+. ++||+|.|..+
T Consensus       422 y~aw~r~-s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~  469 (473)
T KOG1872|consen  422 YVAWNRV-SEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKAR  469 (473)
T ss_pred             ceEEEec-cCCceeeccccccccccccceeeecCCCccchhhheeeccc
Confidence            9999999 56799999999999999999999998888 99999955544

>KOG0944|consensus

Probab=99.82  E-value=1.5e-20  Score=180.26  Aligned_cols=168  Identities=20%  Similarity=0.233  Sum_probs=106.8

Q ss_pred             CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccc-----------------
Q psy18082          2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDY-----------------   64 (280)
Q Consensus         2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~-----------------   64 (280)
                      ++..++|+..|.++|++|+||++||.|  ..+...|+...|++|++||++.|+....+..+..                 
T Consensus       497 ~K~~a~kt~~~ksfP~yLiiqv~rf~~--~dw~pkKld~~iempe~ldls~~rs~g~~p~ee~lpde~~~~~~~~~d~s~  574 (763)
T KOG0944|consen  497 EKKGATKTTRFKSFPDYLIIQVGRFTL--QDWVPKKLDVSIEMPEELDLSSYRSKGLQPGEEALPDEAPETSEFAADRSV  574 (763)
T ss_pred             CccccccccccccCCceEEEEeeEEEe--cCceeeeeccceecchhhchhhhhhcCCCCcccccCCcCcccCccchhHHH
Confidence            578899999999999999999999998  3599999999999999999999988874333221                 


Q ss_pred             ---------cccccccccccCCCCcchh----hccccCCCCCCCCccCCCCCCCCCC-----------------------
Q psy18082         65 ---------GVRKGAESNQASTNQDEEH----CEENQLDPSVSNPVITPYNGDVDEG-----------------------  108 (280)
Q Consensus        65 ---------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  108 (280)
                               ...+.++++...++...+.    -...=..+++..+..-+.....+.+                       
T Consensus       575 i~qL~~MGFp~eac~rAly~tgN~~aEaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~~~~e~~v~si~smGf~~~qa~~  654 (763)
T KOG0944|consen  575 ISQLVEMGFPEEACRRALYYTGNSGAEAASNWLMEHMDDPDIDDPFVVPGNSPKADAREVDEESVASIVSMGFSRNQAIK  654 (763)
T ss_pred             HHHHHHcCCCHHHHHHHHhhhcCccHHHHHHHHHHhccCcccCCceecCCCCCccccCCCChhHheeeeeecCcHHHHHH
Confidence                     2333334443333322221    1111122333333211110000000                       


Q ss_pred             -------------------CCC---CCCC----CCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082        109 -------------------IDI---SHPE----PPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus       109 -------------------~~~---~~~~----~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                                         ++.   +...    .+..............+.+|.|.|+|+|+| ++++|||+|+||+  .
T Consensus       655 aL~~~n~nveravDWif~h~d~~~ed~~~~~s~~~~~~~~~~~~~~~dg~~~Y~L~a~IsHmGts~~sGHYV~hirK--e  732 (763)
T KOG0944|consen  655 ALKATNNNVERAVDWIFSHMDIPVEDAAEGESSSAIESESTPSGTGKDGPGKYALFAFISHMGTSAHSGHYVCHIRK--E  732 (763)
T ss_pred             HHHhcCccHHHHHHHHHhcccccccccCcCCCCCcchhhcCCcccCCCCCcceeEEEEEecCCCCCCCcceEEEEee--c
Confidence                               000   0000    000001111123367889999999999999 9999999999999  5


Q ss_pred             CCeEEecCceeE
Q psy18082        162 DEWYCFNDQSVT  173 (280)
Q Consensus       162 ~~W~~fnD~~V~  173 (280)
                      |+|+.|||++|-
T Consensus       733 gkWVlfNDeKv~  744 (763)
T KOG0944|consen  733 GKWVLFNDEKVA  744 (763)
T ss_pred             CcEEEEcchhhh
Confidence            999999999997

>KOG1868|consensus

Probab=99.79  E-value=2.9e-20  Score=182.51  Aligned_cols=114  Identities=22%  Similarity=0.372  Sum_probs=92.7

Q ss_pred             EEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082          7 KADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE   85 (280)
Q Consensus         7 ~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (280)
                      .|++.|++||++|+|||+||.++.  +...|....|+||.. +++.++...                             
T Consensus       532 lK~~~i~~lp~iLiihL~Rf~~~~--~~~~k~~~~v~~~~~~~~~~~~~~~-----------------------------  580 (653)
T KOG1868|consen  532 LKKLTILRLPKILIIHLKRFSSDG--NSFNKLSTGVDFPLREADLSPRFAE-----------------------------  580 (653)
T ss_pred             cceeeeecCCHHHHHHHHHhccCc--ccccccceeeccchHhhhhchhccc-----------------------------
Confidence            499999999999999999998775  567899999999995 566554100                             


Q ss_pred             cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeE
Q psy18082         86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWY  165 (280)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~  165 (280)
                                                                .......|+|+||++|.|++.+|||+||+++...+.|+
T Consensus       581 ------------------------------------------~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~  618 (653)
T KOG1868|consen  581 ------------------------------------------KGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWF  618 (653)
T ss_pred             ------------------------------------------cCCCccceeeEEEEeccCcccCCceEEEEeecCCCceE
Confidence                                                      12223459999999999999999999999987789999


Q ss_pred             EecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        166 CFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       166 ~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      .|||+.|+.+...+|.      +..||+|||.+.
T Consensus       619 ~fdDs~Vs~~~~~~~~------~s~aYIlFY~~~  646 (653)
T KOG1868|consen  619 TFDDSEVSPISETDVG------SSSAYILFYERL  646 (653)
T ss_pred             EecCeeeecccccccc------CCCceEEEeecC
Confidence            9999999988887774      368999955443

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.7e-19  Score=156.60  Aligned_cols=119  Identities=14%  Similarity=0.199  Sum_probs=86.7

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC   84 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (280)
                      ..+|++.|.+||++|||||+||.            ..|..|..||+.++........                   .   
T Consensus       295 ss~K~~~I~~lP~~LII~i~RF~------------i~V~~~~kiD~p~gw~~~~~~e-------------------~---  340 (415)
T COG5533         295 SSRKRMEILVLPDVLIIHISRFH------------ISVMGRKKIDTPQGWKNTASVE-------------------V---  340 (415)
T ss_pred             cchheEEEEecCceEEEEeeeee------------EEeecccccCCCcchhccCCce-------------------e---
Confidence            35799999999999999999994            3677777888877743321000                   0   


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCe
Q psy18082         85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEW  164 (280)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W  164 (280)
                                     ........+                   ..-.+..|.|+||+||.|++.+|||+++++.  ++.|
T Consensus       341 ---------------~v~~~f~~~-------------------~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~--~~~W  384 (415)
T COG5533         341 ---------------NVTLLFNNG-------------------IGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR--SGTW  384 (415)
T ss_pred             ---------------cccccccCC-------------------CCCCccceeEEEEEeecceecCceeEEeeee--cCce
Confidence                           000001111                   1223679999999999999999999999998  7999


Q ss_pred             EEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        165 YCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       165 ~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                      +.|||+.|+.++.-.     .+..+++|+|||.+
T Consensus       385 ~~~dDs~vr~~~~~t-----~~~~pSsYilFY~r  413 (415)
T COG5533         385 NVYDDSQVRKGSRTT-----SGSHPSSYILFYTR  413 (415)
T ss_pred             EEechhheeecccee-----cccCCcceEEEEEe
Confidence            999999999987633     23337899996654

>KOG1864|consensus

Probab=99.78  E-value=2.9e-19  Score=174.66  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=97.1

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC   84 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (280)
                      .++|.+.|..+|.+|+||||||.|........|+...|.||.+|.+...+.+.                           
T Consensus       452 eae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~---------------------------  504 (587)
T KOG1864|consen  452 EAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDD---------------------------  504 (587)
T ss_pred             hHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccc---------------------------
Confidence            46788999999999999999999998777789999999999999886652211                           


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCCC
Q psy18082         85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~~  163 (280)
                                                                  ......|.|+|||||.| ++..|||+||+|.  .+.
T Consensus       505 --------------------------------------------~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~--~~~  538 (587)
T KOG1864|consen  505 --------------------------------------------NNPDRKYDLVAVVVHLGSTPNRGHYVAYVKS--LDF  538 (587)
T ss_pred             --------------------------------------------cCccceeeEEEEEEeccCCCCCcceEEEEee--CCC
Confidence                                                        11136999999999999 9999999999999  333


Q ss_pred             -eEEecCceeEEeChhhhhhhcCCCC-CeEEEE
Q psy18082        164 -WYCFNDQSVTRITDEDIHKSYGGGP-ARGYYS  194 (280)
Q Consensus       164 -W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L  194 (280)
                       |+.|||+.|+.++.+.|.+..|.+. ...|++
T Consensus       539 nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~  571 (587)
T KOG1864|consen  539 NWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYV  571 (587)
T ss_pred             CceecccccccccCcchhhhccCCCccceeeeE
Confidence             9999999999999999988777654 344444

>KOG1873|consensus

Probab=99.77  E-value=2.5e-20  Score=180.37  Aligned_cols=120  Identities=23%  Similarity=0.326  Sum_probs=98.8

Q ss_pred             EEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhhc
Q psy18082          6 YKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCE   85 (280)
Q Consensus         6 ~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (280)
                      +.|++.|..+||||+||||||.-+. .+...|++.+|.|++.+||..||...-                           
T Consensus       737 akk~~li~~aPpVltihlKrf~q~~-~~~~~k~~~h~~f~E~~dL~~~~~~rc---------------------------  788 (877)
T KOG1873|consen  737 AKKKVLINKAPPVLTIHLKRFFQDI-RGRLSKLNKHVDFKEFEDLLDYMDFRC---------------------------  788 (877)
T ss_pred             hheeeecccCCceeeehHhhhhhhh-hchhhcccccchHHHHHHHHHHhhhhc---------------------------
Confidence            3899999999999999999996554 366899999999999999999954310                           


Q ss_pred             cccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcC------
Q psy18082         86 ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNF------  159 (280)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~------  159 (280)
                                                .+             ........|+|+|||.|.|++.+|||++|+|..      
T Consensus       789 --------------------------~~-------------l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~  829 (877)
T KOG1873|consen  789 --------------------------SH-------------LDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLS  829 (877)
T ss_pred             --------------------------cc-------------cCCcchhhhhhccceeccccccCCcchhhhhccchhhcc
Confidence                                      00             011245799999999999999999999999862      


Q ss_pred             --------------CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        160 --------------STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       160 --------------~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                                    ..++||+..|+.|++|++++|++.      .||+|||.|
T Consensus       830 ~~~~~~~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLks------eAYlLFYER  876 (877)
T KOG1873|consen  830 APSNSKDFESDAGIPSGRWYYISDSIVREVSLDEVLKS------EAYLLFYER  876 (877)
T ss_pred             CccccccchhccCCCCcceEEecchheecccHHHHhhh------hhhhhheec
Confidence                          257999999999999999999874      699995443

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=99.73  E-value=6.1e-19  Score=163.65  Aligned_cols=68  Identities=34%  Similarity=0.678  Sum_probs=59.1

Q ss_pred             CCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        129 AKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       129 ~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                      ......|+|+|||+|+|++++|||++|+|+..++.||+|||+.|++++.++|+..-.|++.+||+|+|
T Consensus       275 ~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~~ev~~~~~~~~~~pY~l~Y  342 (343)
T cd02666         275 DLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFLVY  342 (343)
T ss_pred             ccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecHHHHhhcccCCCCCCEEEEe
Confidence            44678999999999999889999999999977799999999999999999988653445579999943

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1863|consensus

Probab=99.68  E-value=1.5e-17  Score=173.97  Aligned_cols=124  Identities=23%  Similarity=0.364  Sum_probs=104.2

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..++|...+.+||++|.|||+||.|+..++...|++.+++||..|+|.+|+.. .                         
T Consensus       347 ~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~-~-------------------------  400 (1093)
T KOG1863|consen  347 QDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR-F-------------------------  400 (1093)
T ss_pred             hhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc-c-------------------------
Confidence            34667799999999999999999999999999999999999999999999532 0                         


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                              .++                 .......|.|+||++|.|.+++|||++|++....++
T Consensus       401 ------------------------~~~-----------------~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~  439 (1093)
T KOG1863|consen  401 ------------------------KAE-----------------ESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGK  439 (1093)
T ss_pred             ------------------------chh-----------------hhhccceeccchhhcccccccCccceeeecchhhcc
Confidence                                    000                 011226999999999988999999999999878999


Q ss_pred             eEEecCceeEEeChhhhhh-hcCCCC---Ce------EEEE
Q psy18082        164 WYCFNDQSVTRITDEDIHK-SYGGGP---AR------GYYS  194 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~-~~gg~~---~~------aY~L  194 (280)
                      |++|||..|+.++..+++. ++|+..   ..      ||+|
T Consensus       440 w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~l  480 (1093)
T KOG1863|consen  440 WVKFDDLVVTVVSEKEALEQNYGTEEIELSSTADFKNAYML  480 (1093)
T ss_pred             ceeccCceeeeccHHHHHHhhCCCcchhhhcccccCCcceE
Confidence            9999999999999988765 677765   23      7888

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=1e-14  Score=136.76  Aligned_cols=180  Identities=19%  Similarity=0.233  Sum_probs=105.5

Q ss_pred             CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce--ecCCCCCCCcccccccc---------------
Q psy18082          2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV--ETNSPSSEPQYTFRLDY---------------   64 (280)
Q Consensus         2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~--Ldl~~~~~~~~~~~~~~---------------   64 (280)
                      |++.++++..|..||++||||..||.+  ..+...|+...+.+-..  +++++||+..-+.-+..               
T Consensus       485 ~K~~a~~k~~~kslPk~LIlq~~R~~l--qny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPdedE~~t~Nqs~I  562 (749)
T COG5207         485 GKKKASRKPFIKSLPKYLILQVGRYSL--QNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDEDEAFTDNQSLI  562 (749)
T ss_pred             CcccccccchhhccCceeEEecceeec--cceeehhccCceEEccccccchhhHhhccCCcccccCCccccccCchHHHH
Confidence            677889999999999999999999955  45788899888888663  89999988732111111               


Q ss_pred             --------cccccccccccCCCCcchh----hccccCCCCCCCCc-----cCCCCCCCCCCC---------C--------
Q psy18082         65 --------GVRKGAESNQASTNQDEEH----CEENQLDPSVSNPV-----ITPYNGDVDEGI---------D--------  110 (280)
Q Consensus        65 --------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-----~~~~~~~~~~~~---------~--------  110 (280)
                              ...+..+++...++...+.    -...-..++...|.     ....+.++++..         .        
T Consensus       563 ~qL~~mGfp~~~~~rAL~~tgNqDaEsAMNWLFqHMdDPdlndP~~~~~~vPKkDkeVdE~~~~Slle~Gln~n~~Rkal  642 (749)
T COG5207         563 RQLVDMGFPEEDAARALGITGNQDAESAMNWLFQHMDDPDLNDPFVPPPNVPKKDKEVDESKARSLLENGLNPNLCRKAL  642 (749)
T ss_pred             HHHHHcCCCHHHHHHHHhhccCcchHHHHHHHHhhccCcccCCCCCCCCCCCcccccccHHHHHHHHHcCCCHHHHHHHH
Confidence                    2222333333333322211    11111122222222     111111221110         0        


Q ss_pred             -------------------CCCCC--CCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCC--CeEE
Q psy18082        111 -------------------ISHPE--PPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTD--EWYC  166 (280)
Q Consensus       111 -------------------~~~~~--~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~--~W~~  166 (280)
                                         -.-++  .+...+.++....-.....|.|.|||+|.| ++++|||++|||+...+  +|+.
T Consensus       643 ~~~n~d~~r~V~w~~N~~D~tF~EP~v~~eeqqqk~~~~~STa~PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl  722 (749)
T COG5207         643 MDMNTDSKRRVVWCINDDDGTFPEPEVPNEEQQQKKDLGYSTAKPYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVL  722 (749)
T ss_pred             HHccCCchheEEEEEeCCCCCCCCCCCCchhhhhcccccccccCcccceeEEeccCCcccccceEEEEecccCcceeEEE
Confidence                               00011  111111222222223334599999999999 99999999999996554  6899


Q ss_pred             ecCceeEEeChhhhhhh
Q psy18082        167 FNDQSVTRITDEDIHKS  183 (280)
Q Consensus       167 fnD~~V~~v~~~~V~~~  183 (280)
                      |||++|-.++.-++++.
T Consensus       723 ~nDek~v~~~svE~~k~  739 (749)
T COG5207         723 KNDEKTVLNSSVEVLKD  739 (749)
T ss_pred             EccchheehhhHHHHhh
Confidence            99999988877666553

>KOG1871|consensus

Probab=99.53  E-value=3e-15  Score=136.60  Aligned_cols=128  Identities=16%  Similarity=0.197  Sum_probs=103.6

Q ss_pred             CceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCC-cccccccccccccccccccCCCCc
Q psy18082          2 GPIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEP-QYTFRLDYGVRKGAESNQASTNQD   80 (280)
Q Consensus         2 ~~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~   80 (280)
                      ..|++++++.|.+||++|++|||||.|.. ++...|+-..++||-.|.+..-|-. .++.+                   
T Consensus       289 ~eV~~s~q~~leklp~vlilhlkrF~ye~-tgg~~k~~K~i~~~~~l~i~~~~~s~gvk~~-------------------  348 (420)
T KOG1871|consen  289 QEVEASSQTTLEKLPPVLILHLKRFVYEK-TGGARKLGKKIEYPWTLKISKNCFSQGLKIR-------------------  348 (420)
T ss_pred             CeechhhhhhHhhcchhhhhhhhHHHHHh-ccchhhhchhhhccceeeechhhhccccchh-------------------
Confidence            35788999999999999999999998875 5889999999999999877653211 11000                   


Q ss_pred             chhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC
Q psy18082         81 EEHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF  159 (280)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~  159 (280)
                                                                     .......|.|.||+.|+| ++..|||+.-+.+-
T Consensus       349 -----------------------------------------------~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s  381 (420)
T KOG1871|consen  349 -----------------------------------------------ILIATRPYKSLAVVYHTGTSATVGHYLEDVSRS  381 (420)
T ss_pred             -----------------------------------------------hhccccccceEEEEEecccccccCceEEeeeec
Confidence                                                           022345899999999999 99999999999997


Q ss_pred             CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        160 STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       160 ~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                      .-+.|+++||..|..+..++|++-.+.  .+||+|||.+
T Consensus       382 ~~~gw~rIDD~~i~~v~q~dv~~~t~~--r~~yllyY~~  418 (420)
T KOG1871|consen  382 VPSGWQRIDDALILFVAQEDVEKVTGS--RTPYLLYYIE  418 (420)
T ss_pred             ccCceeEeccceeeeccHhhhccccCc--cchheeEeee
Confidence            778999999999999999999874333  6788886654

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=99.44  E-value=4.1e-13  Score=122.33  Aligned_cols=102  Identities=17%  Similarity=0.084  Sum_probs=80.9

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC   84 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (280)
                      ..+.+..|.+||+||.|.++|+... . ....|+...+.+|..+++..++..+...                        
T Consensus       191 ~~~~~r~i~~LPpVL~In~~~~~~~-~-~w~~~~~~~~~ip~~i~~~~~~~~~~~~------------------------  244 (295)
T PF13423_consen  191 PTEQRRTIRSLPPVLSINLNRYSEE-E-FWPKKNWLKIWIPPSINLPHFIADDSQS------------------------  244 (295)
T ss_pred             ceeeeeeccCCCcEEEEEccCCCcc-c-ccccccCCceecceeeeccccccccccc------------------------
Confidence            3556777899999999999999877 3 4489999999999999999885432100                        


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCC--C
Q psy18082         85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFS--T  161 (280)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~--~  161 (280)
                                           ..                   .......+|+|.|+|+|.| +..+|||++|+|...  +
T Consensus       245 ---------------------~~-------------------~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~  284 (295)
T PF13423_consen  245 ---------------------DL-------------------EGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDD  284 (295)
T ss_pred             ---------------------cc-------------------cCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCC
Confidence                                 00                   0133568999999999999 899999999999853  3


Q ss_pred             CCeEEecCcee
Q psy18082        162 DEWYCFNDQSV  172 (280)
Q Consensus       162 ~~W~~fnD~~V  172 (280)
                      .+||.|||-.|
T Consensus       285 ~~W~lFNDflV  295 (295)
T PF13423_consen  285 SQWYLFNDFLV  295 (295)
T ss_pred             CcEEEECcEeC
Confidence            79999999665

>KOG2026|consensus

Probab=98.82  E-value=4.4e-09  Score=96.37  Aligned_cols=101  Identities=18%  Similarity=0.120  Sum_probs=82.7

Q ss_pred             EEEecccCCcceEEEEEEEEEeCCcceeeccccceecc-ceecCCCCCCCcccccccccccccccccccCCCCcchhhcc
Q psy18082          8 ADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVT-SVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHCEE   86 (280)
Q Consensus         8 K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP-~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (280)
                      ++..+.++|++||+|+|||  +.+++...|+.+.|+|| ..+|+.+++.....                           
T Consensus       327 ~rf~l~k~P~ylifh~~rF--~kNn~f~ekNpTl~~f~~~~~~~~~~~~~~~~---------------------------  377 (442)
T KOG2026|consen  327 MRFRLTKLPRYLIFHMKRF--KKNNFFKEKNPTLVEFPYSEVDILHVLDRLKA---------------------------  377 (442)
T ss_pred             hheeeecCCceEEEEeeec--cccCcccccCCceeeccCCccchhhhhhhccc---------------------------
Confidence            7889999999999999999  56668999999999999 45777776322100                           


Q ss_pred             ccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEE
Q psy18082         87 NQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYC  166 (280)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~  166 (280)
                                                               ....-..|.|.|-++|-  .+-|||...++++++++||.
T Consensus       378 -----------------------------------------~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~e  414 (442)
T KOG2026|consen  378 -----------------------------------------VNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYE  414 (442)
T ss_pred             -----------------------------------------ccCccccccchhhhhcC--cccCceEEEEEeCCCcceEE
Confidence                                                     01112589999999997  67899999999999999999


Q ss_pred             ecCceeEEeChhhh
Q psy18082        167 FNDQSVTRITDEDI  180 (280)
Q Consensus       167 fnD~~V~~v~~~~V  180 (280)
                      +.|-.|++...+-|
T Consensus       415 iqdl~v~e~~~qmi  428 (442)
T KOG2026|consen  415 IQDLHVTERLPQMI  428 (442)
T ss_pred             ecccchhhhhhHHH
Confidence            99999999887765

>KOG1275|consensus

Probab=98.12  E-value=2.2e-05  Score=79.08  Aligned_cols=136  Identities=16%  Similarity=0.065  Sum_probs=87.0

Q ss_pred             EEEEecccCCcceEEEEEEEEEeCCcceee--ccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchhh
Q psy18082          7 KADALSSKHIKLAIHQDKVVDFSGTTSENI--TIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEHC   84 (280)
Q Consensus         7 ~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~--Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (280)
                      +.+..|..||.+|.|...-+.-...++.+.  |.-..|-+|+.+.|..--...+..            ......      
T Consensus       714 ~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v------------~~~s~~------  775 (1118)
T KOG1275|consen  714 SQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLV------------STISDL------  775 (1118)
T ss_pred             ccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceee------------eeeccc------
Confidence            455678899999999998885433333333  446678888887776541110000            000000      


Q ss_pred             ccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcC----
Q psy18082         85 EENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNF----  159 (280)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~----  159 (280)
                                         +....                +..+...-.+|+|.|+|+|.| +-..+|.+++||.-    
T Consensus       776 -------------------~~~~~----------------~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~  820 (1118)
T KOG1275|consen  776 -------------------DVSPL----------------PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYH  820 (1118)
T ss_pred             -------------------cCCCC----------------ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCccc
Confidence                               00000                011234458999999999999 77999999999962    


Q ss_pred             ----CCCCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEe
Q psy18082        160 ----STDEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGF  196 (280)
Q Consensus       160 ----~~~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~  196 (280)
                          .+.+||.|||-.|.+++++|.+.--| .=..+-+|||
T Consensus       821 ~~~~~dsqWylFNDfLV~~ite~EAl~~~~-~WKvP~Il~Y  860 (1118)
T KOG1275|consen  821 VIKPDDSQWYLFNDFLVSEITEEEALHFDG-PWKVPAILYY  860 (1118)
T ss_pred             ccCcCcceeEEEcceeeeeCChHHheEecc-CccCcEEEEE
Confidence                24699999999999999999654321 1145667755

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=91.35  E-value=0.45  Score=42.36  Aligned_cols=38  Identities=18%  Similarity=0.450  Sum_probs=31.9

Q ss_pred             CceeEEEEEEEEEeecCCCceEEEEEEcCCCCCeEEecCce
Q psy18082        131 GPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQS  171 (280)
Q Consensus       131 ~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~W~~fnD~~  171 (280)
                      ....|++.+||--.-  +--|+++|+++ .+|.|..|||-+
T Consensus       215 eg~~Y~Vt~VIQY~~--~~~HFvtWi~~-~dGsWLecDDLk  252 (275)
T PF15499_consen  215 EGCLYQVTSVIQYQA--NLNHFVTWIRD-SDGSWLECDDLK  252 (275)
T ss_pred             cCeeEEEEEEEEEec--cCceeEEEEEc-CCCCeEeeccCC
Confidence            456899999997764  35899999999 689999999965

>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.37  E-value=1.3  Score=37.41  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=26.2

Q ss_pred             EEee-c-CCCceEEEEEEcCCCCCeEEecCceeEEeChhh
Q psy18082        142 IHSG-S-ASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED  179 (280)
Q Consensus       142 ~H~G-s-~~sGHY~~yir~~~~~~W~~fnD~~V~~v~~~~  179 (280)
                      .|.| . -..||-+.|++-  .+.||++||+.+-..+++-
T Consensus       129 f~agi~~~g~~Havfa~~t--s~gWy~iDDe~~y~~tPdp  166 (193)
T PF05408_consen  129 FHAGIFLKGQEHAVFACVT--SDGWYAIDDEDFYPWTPDP  166 (193)
T ss_dssp             EEEEEEEESTTEEEEEEEE--TTCEEEEETTEEEE----G
T ss_pred             hhhHheecCCcceEEEEEe--eCcEEEecCCeeeeCCCCh
Confidence            3556 3 347999999987  8899999999999887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
2ibi_A	374	Covalent Ubiquitin-Usp2 Complex Length = 374		1e-06
3v6c_A	367	Crystal Structure Of Usp2 In Complex With Mutated U		1e-06
2hd5_A	359	Usp2 In Complex With Ubiquitin Length = 359		1e-06
3nhe_A	348	High Resolution Structure (1.26a) Of Usp2a In Compl		2e-06
1vjv_A	415	Crystal Structure Of Ubiquitin Carboxyl-terminal Hy		5e-06
2ayn_A	404	Structure Of Usp14, A Proteasome-Associated Deubiqu		5e-06
1nb8_A	353	Structure Of The Catalytic Domain Of Usp7 (Hausp) L		1e-05
1nbf_A	353	Crystal Structure Of A Ubp-Family Deubiquitinating		1e-05
2f1z_A	522	Crystal Structure Of Hausp Length = 522		2e-05
4fip_A	476	Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-		2e-05
3m99_A	471	Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod		2e-05
3mhh_A	476	Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE		2e-05
2y6e_A	367	Ubiquitin Specific Protease 4 Is Inhibited By Its U		2e-05
2gfo_A	396	Structure Of The Catalytic Domain Of Human Ubiquiti		6e-04
3n3k_A	396	The Catalytic Domain Of Usp8 In Complex With A Usp8		7e-04

>pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  S
Sbjct: 309 VYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 358

>pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  S
Sbjct: 302 VYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 351

>pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  S
Sbjct: 283 VYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 332

>pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 32/50 (64%)
Query: 134 VYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  S
Sbjct: 283 VYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 332

>pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Query: 116 PPSTSATKDPSMNAKGPYVYELFSIMIHSGSAS-GGHYYAYIKN-FSTDEWYCFNDQSVT 173
           PP+    ++PS       VY L  ++ H G+ S  GHY A+I++    ++WY FND  V+
Sbjct: 333 PPNLEKGENPSC------VYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVS 386
Query: 174 RITDEDIHKSYGGGPARG----YYSGF 196
            +  E I    GGG +       Y GF
Sbjct: 387 VVEKEKIESLAGGGESDSALILXYKGF 413

>pdb|2AYN|A Chain A, Structure Of Usp14, A Proteasome-Associated Deubiquitinating Enzyme Length = 404

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 135 YELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
           Y+L +++ H G S+S GHY +++K    DEW  F+D  V+ +T EDI +  GGG
Sbjct: 328 YDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVTPEDILRLSGGG 380

>pdb|1NB8|A Chain A, Structure Of The Catalytic Domain Of Usp7 (Hausp) Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 130 KGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED-IHKSYGG 186
           K P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+ I  +YGG
Sbjct: 236 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293

>pdb|1NBF|A Chain A, Crystal Structure Of A Ubp-Family Deubiquitinating Enzyme In Isolation And In Complex With Ubiquitin Aldehyde Length = 353

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 130 KGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED-IHKSYGG 186
           K P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+ I  +YGG
Sbjct: 236 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293

>pdb|2F1Z|A Chain A, Crystal Structure Of Hausp Length = 522

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 130 KGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDED-IHKSYGG 186
           K P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+ I  +YGG
Sbjct: 405 KDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 462

>pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 118 STSATKDPSMNAKGP-YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
           ST      S N K P  +YEL  I+ H G+ + GHY A+ K  S  +W+ FND  V+ I+
Sbjct: 398 STKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK-ISGGQWFKFNDSMVSSIS 456
Query: 177 DEDIHK 182
            E++ K
Sbjct: 457 QEEVLK 462

>pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 118 STSATKDPSMNAKGP-YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
           ST      S N K P  +YEL  I+ H G+ + GHY A+ K  S  +W+ FND  V+ I+
Sbjct: 393 STKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK-ISGGQWFKFNDSMVSSIS 451
Query: 177 DEDIHK 182
            E++ K
Sbjct: 452 QEEVLK 457

>pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 118 STSATKDPSMNAKGP-YVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRIT 176
           ST      S N K P  +YEL  I+ H G+ + GHY A+ K  S  +W+ FND  V+ I+
Sbjct: 398 STKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCK-ISGGQWFKFNDSMVSSIS 456
Query: 177 DEDIHK 182
            E++ K
Sbjct: 457 QEEVLK 462

>pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 132 PYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDI 180
           PYVY+L ++  H G+   GHY AY KN    +WY F+D +V+  +++ I
Sbjct: 297 PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQI 345

>pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQ 170
           Y LFS+  H G   GGHY AY KN +   W+ F+D 
Sbjct: 337 YNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDH 372

>pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 135 YELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFND 169
           Y LFS+  H G   GGHY AY KN +   W+ F+D
Sbjct: 337 YNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDD 371

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	3e-17
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	4e-17
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	2e-16
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	2e-16
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	5e-15
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	7e-15
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	2e-13
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	4e-13
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	5e-13
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	7e-10

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 118 STSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITD 177
           +    K          +YEL  I+ H G+ + GHY A+ K  S  +W+ FND  V+ I+ 
Sbjct: 399 TKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSISQ 457

Query: 178 EDIHKS 183
           E++ K 
Sbjct: 458 EEVLKE 463

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348

 Score = 79.1 bits (195), Expect = 4e-17
 Identities = 22/56 (39%), Positives = 32/56 (57%)

Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
                 VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  S
Sbjct: 277 ENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTS 332

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 77.4 bits (190), Expect = 2e-16
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 114 PEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQSV 172
            E      +    + +     Y+L +++ H G S+S GHY +++K    DEW  F+D  V
Sbjct: 307 KEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKV 365

Query: 173 TRITDEDIHKSYGGGPARGYY 193
           + +T EDI +  GGG     Y
Sbjct: 366 SIVTPEDILRLSGGGDWHIAY 386

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
           + K P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+  +   GG
Sbjct: 234 DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293

Query: 188 PARGY 192
                
Sbjct: 294 HDDDL 298

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367

 Score = 73.0 bits (179), Expect = 5e-15
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 126 SMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
              +  PYVY+L ++  H G+   GHY AY KN    +WY F+D +V+  +++ I   
Sbjct: 291 CNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTK 348

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 73.5 bits (180), Expect = 7e-15
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
           + K P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+  +   GG
Sbjct: 403 DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 462

Query: 188 PARGY 192
                
Sbjct: 463 HDDDL 467

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396

 Score = 68.8 bits (168), Expect = 2e-13
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 126 SMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
                    Y LFS+  H G   GGHY AY KN +   W+ F+D  V+ I+   +  S
Sbjct: 328 IGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSS 385

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355

 Score = 67.8 bits (165), Expect = 4e-13
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 128 NAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
           +  G  VY+L+++  HSGS   GHY A  +      W+ +ND  V+ +++  +  S
Sbjct: 287 DKAGSPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVSENQVASS 340

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415

 Score = 67.6 bits (164), Expect = 5e-13
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 64  YGVRKGAESNQASTNQDEEHCEENQLDPSVSNPVITP---YNGDVDEGIDISHPEPPSTS 120
             VR      +   N+ E   +  + DPS S  V+TP   Y   V               
Sbjct: 270 VKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYK 329

Query: 121 ATKDPSMNAKG--PYVYELFSIMIHSG-SASGGHYYAYIKNF-STDEWYCFNDQSVTRIT 176
               P++        VY L  ++ H G ++  GHY A+I++    ++WY FND  V+ + 
Sbjct: 330 KHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE 389

Query: 177 DEDIHKSYGGGP 188
            E I    GGG 
Sbjct: 390 KEKIESLAGGGE 401

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 58.8 bits (141), Expect = 7e-10
 Identities = 24/100 (24%), Positives = 34/100 (34%), Gaps = 4/100 (4%)

Query: 86  ENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG 145
           E  +D   S+         +D     S      + +         GP  Y+LF+ + H G
Sbjct: 749 ERAVDWIFSHIDDLDAEAAMDISEGRS-AADSISESVPVGPKVRDGPGKYQLFAFISHMG 807

Query: 146 -SASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSY 184
            S   GHY  +IK      W  +NDQ V           Y
Sbjct: 808 TSTMCGHYVCHIK--KEGRWVIYNDQKVCASEKPPKDLGY 845

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.97
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.97
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.97
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.96
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.96
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.95
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.95
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.95
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.94
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.93
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	99.63

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.97  E-value=9.3e-31  Score=246.77  Aligned_cols=183  Identities=20%  Similarity=0.271  Sum_probs=115.1

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccc-----cccccccc----ccccc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTF-----RLDYGVRK----GAESN   73 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~-----~~~~~~~~----~~~~~   73 (280)
                      ...++|+..|.+||+||+||||||.|+..++...|++..|.||..|||.+||......     +.+.....    .....
T Consensus       210 ~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~r~~~~~~~~~~~e~~~~  289 (415)
T 1vjv_A          210 NSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKERE  289 (415)
T ss_dssp             CCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             cccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChhhhhhhhhhHHHHHHHhhhhhhhhhh
Confidence            4568999999999999999999999998888999999999999999999998875321     11110000    00000


Q ss_pred             ccCCCCcchhhccccCCCCCCCCccCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEe
Q psy18082         74 QASTNQDEEHCEENQLDPSVSNPVITP---------YNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHS  144 (280)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~  144 (280)
                      .+.....+.      +......+....         ............  . +     ............|+|+|||+|.
T Consensus       290 ~k~~~~~~~------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~-~-----~~~~~~~~~~~~Y~L~aVv~H~  355 (415)
T 1vjv_A          290 IKRRKFDPS------SSENVMTPREQYETQVALNESEKDQWLEEYKKH--F-P-----PNLEKGENPSCVYNLIGVITHQ  355 (415)
T ss_dssp             -------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTT--S-C-----TTCCTTBCSSSEEEEEEEEEEE
T ss_pred             hhhcccccc------ccccccccchhhhhchhhHHhhhhhhhhhcccc--c-c-----cccccccCCCceEEEEEEEEec
Confidence            000000000      000000000000         000000000000  0 0     0000012346799999999999


Q ss_pred             e-cCCCceEEEEEEc-CCCCCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeecc
Q psy18082        145 G-SASGGHYYAYIKN-FSTDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFEDK  199 (280)
Q Consensus       145 G-s~~sGHY~~yir~-~~~~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~~  199 (280)
                      | ++++|||+||+|+ ..+++||+|||+.|+++++++|+...||+. .+||||+|.++
T Consensus       356 G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~  413 (415)
T 1vjv_A          356 GANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGF  413 (415)
T ss_dssp             SSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEET
T ss_pred             CCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEec
Confidence            9 8999999999998 568999999999999999999988655544 89999966554

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.97  E-value=9.7e-31  Score=242.17  Aligned_cols=126  Identities=23%  Similarity=0.342  Sum_probs=101.5

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..++|++.|.+||+||+||||||.|+..++...|+++.|.||..|||.+||...                          
T Consensus       180 ~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~--------------------------  233 (353)
T 1nb8_A          180 QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT--------------------------  233 (353)
T ss_dssp             ECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGGGBSSC--------------------------
T ss_pred             EeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhhhhccc--------------------------
Confidence            457999999999999999999999998778889999999999999999995321                          


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                  ....+..|+|+|||+|.|++.+|||+||+|+..+++
T Consensus       234 --------------------------------------------~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~  269 (353)
T 1nb8_A          234 --------------------------------------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK  269 (353)
T ss_dssp             --------------------------------------------CTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSC
T ss_pred             --------------------------------------------CCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCC
Confidence                                                        011246899999999999889999999999867899


Q ss_pred             eEEecCceeEEeChhhhhh-hcCCC--------CCeEEEEEeecc
Q psy18082        164 WYCFNDQSVTRITDEDIHK-SYGGG--------PARGYYSGFEDK  199 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~-~~gg~--------~~~aY~L~~~~~  199 (280)
                      ||+|||+.|+++++++|+. .+||.        ...||+|+|.++
T Consensus       270 W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aYiLfY~r~  314 (353)
T 1nb8_A          270 WCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (353)
T ss_dssp             CEEEETTEEEECCHHHHTGGGSCCC-------CCEEEEEEEEEET
T ss_pred             EEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEEEEEEEEC
Confidence            9999999999999999875 67774        268999965554

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.97  E-value=6.2e-31  Score=246.57  Aligned_cols=175  Identities=19%  Similarity=0.251  Sum_probs=114.1

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|++.|.+||+||+||||||.|+..++...|++..|.||..|||.+||.......... .+..   .........+
T Consensus       218 ~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~  293 (404)
T 2ayn_A          218 NALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVS-FRSK---FKDLEDKKVN  293 (404)
T ss_dssp             ECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTT-TTGG---GTCTTC----
T ss_pred             ccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChhhhhhcch-hhhH---Hhhhhcccch
Confidence            35689999999999999999999999987788999999999999999999987643111000 0000   0000000000


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFST  161 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~  161 (280)
                      .........+.         .+.+...+     +...    ...........|+|+|||+|.| ++++|||+||+|+ .+
T Consensus       294 ~~~~~~~~~~~---------~~~~~~~e-----~~~~----~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~  354 (404)
T 2ayn_A          294 QQPNTSDKKSS---------PQKEVKYE-----PFSF----ADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQ  354 (404)
T ss_dssp             ---------------------------C-----CCCC----SCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-ET
T ss_pred             hhhhhcccccc---------cccccccc-----cccc----ccccCcCCCceEEEEEEEEecCCCCCCCCeEEEEEC-CC
Confidence            00000000000         00000000     0000    0011234568999999999999 7999999999998 58


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeeccc
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFEDKV  200 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~~~  200 (280)
                      ++||+|||+.|+++++++|+...||+. .+||||+|.++-
T Consensus       355 ~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~  394 (404)
T 2ayn_A          355 DEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRR  394 (404)
T ss_dssp             TEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred             CeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecC
Confidence            899999999999999999988655444 899999666553

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.96  E-value=1.9e-29  Score=234.06  Aligned_cols=118  Identities=20%  Similarity=0.275  Sum_probs=102.0

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ..++|++.|++||+||+||||||.|+.  +...|++..|.||. .|||.+|+...                         
T Consensus       241 ~~a~K~~~i~~lP~vL~i~LkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~-------------------------  293 (367)
T 2y6e_A          241 QQATKKFDLWSLPKILVVHLKRFSYNR--YWRDKLDTVVEFPIRGLNMSEFVCNL-------------------------  293 (367)
T ss_dssp             ECCEEEEEEEECCSEEEEEEECEEECS--SCEEECCCCEECCSSCEECGGGBSCS-------------------------
T ss_pred             ceEEEEEEEecCCcEEEEEEeCeeecC--ccceecCceEEecCCcCChhhhccCC-------------------------
Confidence            457899999999999999999999975  56789999999997 69999995331                         


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                                                    ......|+|+|||+|.|++++|||+||+|+..++
T Consensus       294 ----------------------------------------------~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~  327 (367)
T 2y6e_A          294 ----------------------------------------------SARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNG  327 (367)
T ss_dssp             ----------------------------------------------SSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTC
T ss_pred             ----------------------------------------------CCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCC
Confidence                                                          1124689999999999999999999999997689


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeeccc
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDKV  200 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~~  200 (280)
                      +||+|||+.|+++++++|..      ..||+|||.++-
T Consensus       328 ~W~~fnD~~V~~v~~~~v~~------~~aYiLfY~r~~  359 (367)
T 2y6e_A          328 KWYYFDDSNVSLASEDQIVT------KAAYVLFYQRRD  359 (367)
T ss_dssp             CEEEEETTEEEECCGGGTSS------TTEEEEEEEECC
T ss_pred             eEEEECCCCceECCHHHcCC------CCcEEEEEEEcC
Confidence            99999999999999999864      479999766654

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.96  E-value=2.6e-29  Score=243.86  Aligned_cols=127  Identities=23%  Similarity=0.334  Sum_probs=109.0

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|++.|.+||+||+||||||.|+..++...|+++.|.||..|||.+||...                         
T Consensus       348 ~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~~~~~~-------------------------  402 (522)
T 2f1z_A          348 LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT-------------------------  402 (522)
T ss_dssp             SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGGGBSSC-------------------------
T ss_pred             ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchhhhccc-------------------------
Confidence            3567999999999999999999999998878899999999999999999995321                         


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                                                   ....+..|+|+|||+|.|++.+|||+||+|+..++
T Consensus       403 ---------------------------------------------~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~  437 (522)
T 2f1z_A          403 ---------------------------------------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDG  437 (522)
T ss_dssp             ---------------------------------------------CTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSS
T ss_pred             ---------------------------------------------cCCCCcEEEEEEEEEecccCCCceEEEEEecCCCC
Confidence                                                         01124689999999999988999999999986789


Q ss_pred             CeEEecCceeEEeChhhhhh-hcCCC--------CCeEEEEEeecc
Q psy18082        163 EWYCFNDQSVTRITDEDIHK-SYGGG--------PARGYYSGFEDK  199 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~-~~gg~--------~~~aY~L~~~~~  199 (280)
                      +||+|||+.|+++++++|+. .+||.        ...||||+|.++
T Consensus       438 ~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aYiLfY~r~  483 (522)
T 2f1z_A          438 KWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  483 (522)
T ss_dssp             CCEEEETTEEEECCHHHHSTTSSCCC--------CEEEEEEEEEET
T ss_pred             CEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceEEEEEEEC
Confidence            99999999999999999875 67774        268999965554

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.95  E-value=3.6e-28  Score=228.33  Aligned_cols=116  Identities=21%  Similarity=0.269  Sum_probs=99.5

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ..++|++.|++||+||+||||||.|+.  ....|++..|.||. .|||.+|+...                         
T Consensus       278 ~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~K~~~~v~fp~~~Ldl~~~~~~~-------------------------  330 (396)
T 2gfo_A          278 RDSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIGP-------------------------  330 (396)
T ss_dssp             ECEEEEEEEEECCSEEEEEECCEEECS--SSEEECCCEEECCSSCBCCGGGBCSC-------------------------
T ss_pred             cceEEEEEEecCCcEEEEEecceeccC--ccceecCceEecchhhccccccccCC-------------------------
Confidence            467899999999999999999999975  35689999999996 69999994321                         


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                                                    ......|+|+|||+|.|++++|||+||+|+..++
T Consensus       331 ----------------------------------------------~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~  364 (396)
T 2gfo_A          331 ----------------------------------------------KNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQ  364 (396)
T ss_dssp             ----------------------------------------------CSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTT
T ss_pred             ----------------------------------------------CCCCceEEEEEEEEecCCCCCCceEEEEcCCCCC
Confidence                                                          1123589999999999999999999999996679


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                      +||+|||+.|++|++++|..      ..||+|||.+
T Consensus       365 ~W~~fnD~~V~~v~~~~v~~------~~aYiLfY~r  394 (396)
T 2gfo_A          365 RWFKFDDHEVSDISVSSVKS------SAAYILFYTS  394 (396)
T ss_dssp             EEEEEETTEEEECCHHHHSC------TTEEEEEEEC
T ss_pred             CEEEEeCCCeEECCHHHcCC------CCceEEEEEE
Confidence            99999999999999999964      4799996554

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.95  E-value=3.1e-28  Score=222.92  Aligned_cols=117  Identities=22%  Similarity=0.299  Sum_probs=100.7

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE   81 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
                      ...++|+..|.+||++|+||||||.|+  ++...|++..|.||. .|||.+|+..                         
T Consensus       225 ~~~~~k~~~i~~lP~vL~i~lkRf~~~--~~~~~K~~~~v~fp~~~ldl~~~~~~-------------------------  277 (348)
T 3nhe_A          225 RKRCIKKFSIQRFPKILVLHLKRFSES--RIRTSKLTTFVNFPLRDLDLREFASE-------------------------  277 (348)
T ss_dssp             ECCEEEEEEEEECCSEEEEEECCBCCC--SSCCCBCCCCEECCSSCEECGGGBCT-------------------------
T ss_pred             cccEEEEEEeecCCceEEEEEEccccc--CCceeecCcceeccCCcCCHhhhcCC-------------------------
Confidence            356899999999999999999999665  467899999999995 7999999432                         


Q ss_pred             hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCC
Q psy18082         82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFST  161 (280)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~  161 (280)
                                                                     ......|+|+|||+|.|++.+|||+||+|++.+
T Consensus       278 -----------------------------------------------~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~  310 (348)
T 3nhe_A          278 -----------------------------------------------NTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGT  310 (348)
T ss_dssp             -----------------------------------------------TCCCCEEEEEEEEEEEECSSCEEEEEEEECTTT
T ss_pred             -----------------------------------------------CCCCCcEEEEEEEEccCCCCCcccEEEEccCCC
Confidence                                                           112458999999999999999999999999778


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      ++||+|||+.|+++++++|..      ..||+|||.++
T Consensus       311 ~~W~~~nD~~V~~v~~~~v~~------~~aY~LfY~r~  342 (348)
T 3nhe_A          311 GEWHTFNDSSVTPMSSSQVRT------SDAYLLFYELA  342 (348)
T ss_dssp             CCEEEEETTEEEEECGGGTCC------TTEEEEEEEEC
T ss_pred             CcEEEEeCCCceECCHHHcCC------CCceEEEEEec
Confidence            999999999999999999954      47999965554

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.95  E-value=6.4e-28  Score=221.41  Aligned_cols=115  Identities=17%  Similarity=0.230  Sum_probs=97.9

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE   81 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
                      ...++|++.|.+||+||+||||||.|+.  +...|++..|.||. .|||.+|+..                         
T Consensus       235 ~~~a~k~~~i~~lP~vL~i~lkRF~~~~--~~~~K~~~~v~fp~~~l~l~~~~~~-------------------------  287 (355)
T 3i3t_A          235 KTRSTKKLTVQRFPRILVLHLNRFSASR--GSIKKSSVGVDFPLQRLSLGDFASD-------------------------  287 (355)
T ss_dssp             CCCEEEEEEEEECCSEEEEEECCEECCS--SCCEECCCCCBCCSSCEECGGGBC--------------------------
T ss_pred             ccceEEEEEcccCChheEEEhhheecCC--CCceECCcceeCCccccCchhhccC-------------------------
Confidence            4678999999999999999999997764  67889999999995 5999998432                         


Q ss_pred             hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCC
Q psy18082         82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFST  161 (280)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~  161 (280)
                                                                     ......|+|+|||+|.|++++|||+||+|.  .
T Consensus       288 -----------------------------------------------~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~--~  318 (355)
T 3i3t_A          288 -----------------------------------------------KAGSPVYQLYALCNHSGSVHYGHYTALCRC--Q  318 (355)
T ss_dssp             --------------------------------------------------CCEEEEEEEEEEEEETTEEEEEEEEEE--T
T ss_pred             -----------------------------------------------CCCCcceEEEEEEEecCCCCCCeEEEEEEc--C
Confidence                                                           112458999999999999999999999998  6


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      +.||+|||+.|+++++++|..      ..||+|||.+.
T Consensus       319 ~~W~~~nD~~V~~v~~~~v~~------~~aYiLfY~r~  350 (355)
T 3i3t_A          319 TGWHVYNDSRVSPVSENQVAS------SEGYVLFYQLM  350 (355)
T ss_dssp             TEEEEEETTEEEEECHHHHHT------SCCSEEEEEEC
T ss_pred             CeEEEEcCCCcEECCHHHcCC------CCcEEEEEEec
Confidence            679999999999999999975      36999955543

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.94  E-value=1.9e-27  Score=228.02  Aligned_cols=127  Identities=20%  Similarity=0.281  Sum_probs=105.0

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcch
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEE   82 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (280)
                      ...++|+..|.+||+||+||||||.|+.. +...|++..|.||..|||.+|+.......                     
T Consensus       347 ~~~a~k~~~i~~lP~vL~i~LkRF~~~~~-~~~~K~~~~V~fP~~Ldl~~~~~~~~~~~---------------------  404 (476)
T 3mhs_A          347 TQDAIKQLGIHKLPSVLVLQLKRFEHLLN-GSNRKLDDFIEFPTYLNMKNYCSTKEKDK---------------------  404 (476)
T ss_dssp             ECCCEEEEEEEEBCSEEEEEECCEEECTT-SCEEECCCCCBCCSEEECGGGBSCCBCCC---------------------
T ss_pred             cccEEEEEEcccCCcceEEEeeeccccCC-CCeEECCEEEcCCCeeechhhcCcccccc---------------------
Confidence            34678999999999999999999999864 78899999999999999999965431000                     


Q ss_pred             hhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCC
Q psy18082         83 HCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTD  162 (280)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~  162 (280)
                                            ..                   .........|+|+|||+|.|++++|||++|+|. .++
T Consensus       405 ----------------------~~-------------------~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~  442 (476)
T 3mhs_A          405 ----------------------HS-------------------ENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGG  442 (476)
T ss_dssp             -------------------------------------------CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTS
T ss_pred             ----------------------cc-------------------cccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCC
Confidence                                  00                   001234678999999999999999999999997 588


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeecc
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFEDK  199 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~~  199 (280)
                      +||+|||+.|+++++++|+.      ..||+|||.++
T Consensus       443 ~W~~fnD~~V~~v~~~~v~~------~~aYiLfY~r~  473 (476)
T 3mhs_A          443 QWFKFNDSMVSSISQEEVLK------EQAYLLFYTIR  473 (476)
T ss_dssp             CEEEEETTEEEEECHHHHTT------SCEEEEEEEEE
T ss_pred             cEEEEeCCceEECCHHHhcc------CCcEEEEEEEe
Confidence            99999999999999999976      37999976665

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.93  E-value=6.2e-26  Score=231.06  Aligned_cols=55  Identities=9%  Similarity=-0.112  Sum_probs=50.7

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQY   58 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~   58 (280)
                      ...++|++.|.+||+||+||||||.|+.. +...|++..|.||+.|||++||....
T Consensus       572 k~~a~K~~~i~~lP~vLiihLkRF~~d~~-~~~~Ki~~~V~FP~~LDl~~y~~~~~  626 (854)
T 3ihp_A          572 KSVAVKTTRFASFPDYLVIQIKKFTFGLD-WVPKKLDVSIEMPEELDISQLRGTGL  626 (854)
T ss_dssp             EEEEEEEEEESSCCSEEEEEECCEEECGG-GCEEECCEECCCCSEEECGGGBCCCS
T ss_pred             cceeeEEEEeeeCCceEEEEeehheecCC-CceEECCeEEecCCcEehHHhccCCC
Confidence            46799999999999999999999999876 88899999999999999999988755

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=99.63  E-value=2.9e-16  Score=143.96  Aligned_cols=139  Identities=12%  Similarity=0.071  Sum_probs=75.6

Q ss_pred             EecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcc---cccccccccccccccccCCCCc-c----
Q psy18082         10 ALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQY---TFRLDYGVRKGAESNQASTNQD-E----   81 (280)
Q Consensus        10 ~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~----   81 (280)
                      +.|.+||++|+||+.||      +...||-.+|.||.+||+..+|++++   +++.+.+.....+..+...... +    
T Consensus       161 ikisrLP~yLtVq~vRF------gKkaKIlrkV~fp~eLDvtdl~tdelr~~~vr~kl~e~e~~~~~k~~k~~~~~~~~~  234 (374)
T 2vhf_A          161 LKFAEAPSCLIIQMPRF------GKDFKLFKKIFPSLELNITDLLEDTPRQCRICGGLAMYECRECYDDPDISAGKIKQF  234 (374)
T ss_dssp             EEESSCCSEEEEECCCC------SSSSSCCCCCBCCSEECCGGGBSSSCCBCTTTSCBCCEECGGGTTCTTTTTTSCCEE
T ss_pred             CeeecCCcceEEeeecc------CccccccCCCCCcchhccHhhcCcchhhccHhHHHHHHHHHHHHhhhhccccccccc
Confidence            34999999999999999      67789999999999999999999975   3333332221111111111000 0    


Q ss_pred             -hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcC-
Q psy18082         82 -EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNF-  159 (280)
Q Consensus        82 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~-  159 (280)
                       ..+.... ......     .+. ........     .................|+|.|||+    +++|||++|||.. 
T Consensus       235 ~~~~~~~~-~~~~~~-----~~~-~~~~~~~~-----~~~~~~~~~~g~~psg~yeL~aVlt----adsgHYvafVK~~~  298 (374)
T 2vhf_A          235 CKTCNTQV-HLHPKR-----LNH-KYNPVSLP-----KDLPDWDWRHGCIPCQNMELFAVLC----IETSHYVAFVKYGK  298 (374)
T ss_dssp             CHHHHHHH-TTSGGG-----TTC-CCEECCC---------------------CCEEEEEEEE----EETTEEEEEEECSS
T ss_pred             cchhhhhh-hhhhhh-----hcc-cccccccC-----ccccccccccCCCCceeEEEEEEEE----ccCCceEEEEEecC
Confidence             1111000 000000     000 00000000     0000000011234557999999999    8999999999973 


Q ss_pred             CCCCeEEecCc
Q psy18082        160 STDEWYCFNDQ  170 (280)
Q Consensus       160 ~~~~W~~fnD~  170 (280)
                      .+++||+||-.
T Consensus       299 ~d~~W~~FDsm  309 (374)
T 2vhf_A          299 DDSAWLFFDSM  309 (374)
T ss_dssp             STTCEEEEETT
T ss_pred             CCCCeEEEech
Confidence            37999999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-21
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	2e-18
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	2e-18
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	3e-18
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	9e-12

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.6 bits (223), Expect = 2e-21
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 7/125 (5%)

Query: 76  STNQDEEHCEENQLDPSVSNPVITP-----YNGDVDEGIDISHPEPPSTSATKDPSMNAK 130
             N+ E   +  + DPS S  V+TP         ++E       E        +      
Sbjct: 264 EKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGEN 323

Query: 131 GPYVYELFSIMIHSG-SASGGHYYAYIKN-FSTDEWYCFNDQSVTRITDEDIHKSYGGGP 188
              VY L  ++ H G ++  GHY A+I++    ++WY FND  V+ +  E I    GGG 
Sbjct: 324 PSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGE 383

Query: 189 ARGYY 193
           +    
Sbjct: 384 SDSAL 388

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (200), Expect = 2e-18
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 123 KDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHK 182
           ++ +       VY L+++  HSG+  GGHY AY ++  T EW+ FND SVT ++   +  
Sbjct: 266 REFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRT 325

Query: 183 S 183
           S
Sbjct: 326 S 326

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (201), Expect = 2e-18
 Identities = 20/54 (37%), Positives = 27/54 (50%)

Query: 130 KGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKS 183
                Y LFS+  H G   GGHY AY KN +   W+ F+D  V+ I+   +  S
Sbjct: 285 NNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSS 338

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 3e-18
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 112 SHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTDEWYCFNDQ 170
              E      +    + +     Y+L +++ H G S+S GHY +++K    DEW  F+D 
Sbjct: 295 PQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDD 353

Query: 171 SVTRITDEDIHKSYGGGPARGYY 193
            V+ +T EDI +  GGG     Y
Sbjct: 354 KVSIVTPEDILRLSGGGDWHIAY 376

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 9e-12
 Identities = 20/56 (35%), Positives = 30/56 (53%)

Query: 132 PYVYELFSIMIHSGSASGGHYYAYIKNFSTDEWYCFNDQSVTRITDEDIHKSYGGG 187
           P  Y L ++++HSG   GGHY  Y+      +W  F+D  V+R T E+  +   GG
Sbjct: 238 PANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGG 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.97
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.96
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.93
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.9
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.88

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.2e-30  Score=236.03  Aligned_cols=126  Identities=23%  Similarity=0.349  Sum_probs=109.6

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..+.|+..|.++|++|+|||+||.|+..++...|++..|.||..|||.+|+...                          
T Consensus       180 ~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~--------------------------  233 (347)
T d1nbfa_         180 QEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT--------------------------  233 (347)
T ss_dssp             ECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSC--------------------------
T ss_pred             eeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccc--------------------------
Confidence            568899999999999999999999999889999999999999999999995331                          


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                  .......|+|+|||+|.|++.+|||+||+|++.+++
T Consensus       234 --------------------------------------------~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~  269 (347)
T d1nbfa_         234 --------------------------------------------DPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGK  269 (347)
T ss_dssp             --------------------------------------------CTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSC
T ss_pred             --------------------------------------------cccCccceeeEEEEEecCCCCCCEEEEeeecCCCCE
Confidence                                                        122356899999999999779999999999877889


Q ss_pred             eEEecCceeEEeChhhhhh-hcCCCC--------CeEEEEEeecc
Q psy18082        164 WYCFNDQSVTRITDEDIHK-SYGGGP--------ARGYYSGFEDK  199 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~-~~gg~~--------~~aY~L~~~~~  199 (280)
                      ||+|||+.|++|++++|+. .+||.+        .+||+|+|.|+
T Consensus       270 W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         270 WCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             CEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEEEEEEG
T ss_pred             EEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEEEEEec
Confidence            9999999999999999976 677654        37999966554

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.2e-29  Score=229.72  Aligned_cols=173  Identities=20%  Similarity=0.295  Sum_probs=113.5

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      ..++++..|.++|++|+|||+||.|+..+....|++..|.||..|||.+|+.+........ .+..   .  ........
T Consensus       209 ~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~~~~~~~~~~-~~~~---~--~~~~~~~~  282 (383)
T d2ayna1         209 ALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVS-FRSK---F--KDLEDKKV  282 (383)
T ss_dssp             CCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHHHHHHTTT-TTGG---G--TCTTC---
T ss_pred             eeeeeeeeeecccceeeeeccceeecccCcceeecCcEEccCCeeechhhcchhhhccccc-hhhh---h--hhhhhhhh
Confidence            4578999999999999999999999988888999999999999999999987643111000 0000   0  00000000


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEee-cCCCceEEEEEEcCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSG-SASGGHYYAYIKNFSTD  162 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~~~  162 (280)
                      ............    +     .......   .    ..............|+|+|||+|.| ++.+|||+||+|+ .++
T Consensus       283 ~~~~~~~~~~~~----~-----~~~~~~~---~----~~~~~~~~~~~~~~Y~L~avi~H~G~s~~~GHY~a~vk~-~~~  345 (383)
T d2ayna1         283 NQQPNTSDKKSS----P-----QKEVKYE---P----FSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQD  345 (383)
T ss_dssp             ----------------------------C---C----CCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEEEEEEE-ETT
T ss_pred             ccccCccccccc----c-----ccccccc---c----ccccccccCCCCceEEEEEEEEEECCCCCCCCcEEEEEC-CCC
Confidence            000000000000    0     0000000   0    0000011344567899999999999 8999999999997 478


Q ss_pred             CeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeecc
Q psy18082        163 EWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFEDK  199 (280)
Q Consensus       163 ~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~~  199 (280)
                      +||+|||+.|++|++++|++..+|.. ..||+|+|.+|
T Consensus       346 ~W~~~nD~~V~~v~~~~v~~~~~~~~~~~aYiLfY~r~  383 (383)
T d2ayna1         346 EWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPR  383 (383)
T ss_dssp             EEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC
T ss_pred             eEEEEECCceEEeCHHHHHHhhCCCCCCceEEEEEEEC
Confidence            99999999999999999998765544 78999977664

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=3.1e-26  Score=208.30  Aligned_cols=167  Identities=19%  Similarity=0.265  Sum_probs=111.9

Q ss_pred             eEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccceecCCCCCCCcccccccc-----------ccccc--c
Q psy18082          4 IVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSVETNSPSSEPQYTFRLDY-----------GVRKG--A   70 (280)
Q Consensus         4 ~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~~~~~~~~-----------~~~~~--~   70 (280)
                      ..++++..|.++|++|+|||+||.|+..+....|++..|.||..||+.+++..........           .....  .
T Consensus       193 ~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (397)
T d1vjva_         193 SIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREI  272 (397)
T ss_dssp             CCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ceeeeeceeecCCceeEEEeeeeeeccccccccccCceeecCcEEecccccchhhhhhhhhhhHhhhhhhhccchHHHHH
Confidence            4578889999999999999999999999999999999999999999999876643111100           00000  0


Q ss_pred             cccccCCCCcc-----h--h------------hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q psy18082         71 ESNQASTNQDE-----E--H------------CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKG  131 (280)
Q Consensus        71 ~~~~~~~~~~~-----~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (280)
                      ...........     .  .            .........            ...                ........
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~----------------~~~~~~~~  324 (397)
T d1vjva_         273 KRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKH------------FPP----------------NLEKGENP  324 (397)
T ss_dssp             ------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTT------------SCT----------------TCCTTBCS
T ss_pred             hhhccCCccccccccchhhccchhcccchhccchhhhcccc------------ccc----------------cccccCCC
Confidence            00000000000     0  0            000000000            000                00012345


Q ss_pred             ceeEEEEEEEEEee-cCCCceEEEEEEcCC-CCCeEEecCceeEEeChhhhhhhcCCCC-CeEEEEEeec
Q psy18082        132 PYVYELFSIMIHSG-SASGGHYYAYIKNFS-TDEWYCFNDQSVTRITDEDIHKSYGGGP-ARGYYSGFED  198 (280)
Q Consensus       132 ~~~Y~L~aVi~H~G-s~~sGHY~~yir~~~-~~~W~~fnD~~V~~v~~~~V~~~~gg~~-~~aY~L~~~~  198 (280)
                      ...|+|+|||+|.| ++.+|||+||+|++. +++||+|||+.|++|++++|++..||+. .+||||||+|
T Consensus       325 ~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~~~~V~~~~~~~~~~~aYlLfY~r  394 (397)
T d1vjva_         325 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKG  394 (397)
T ss_dssp             SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEE
T ss_pred             CCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECCHHHHHHhhCCCCCCeEEEEEEEe
Confidence            57899999999999 789999999999854 5899999999999999999998776654 7899995443

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.1e-24  Score=188.98  Aligned_cols=114  Identities=23%  Similarity=0.315  Sum_probs=94.6

Q ss_pred             EEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccc-eecCCCCCCCcccccccccccccccccccCCCCcchh
Q psy18082          5 VYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTS-VETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDEEH   83 (280)
Q Consensus         5 ~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~-~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (280)
                      .+.|...+.++|++|+||++||.++.  ....|....|.|+. .|||++++..                           
T Consensus       221 ~~~k~~~~~~~P~~l~i~~~r~~~~~--~~~~~~~~~v~~~~~~~dl~~~~~~---------------------------  271 (336)
T d2hd5a1         221 RCIKKFSIQRFPKILVLHLKRFSESR--IRTSKLTTFVNFPLRDLDLREFASE---------------------------  271 (336)
T ss_dssp             CEEEEEEEEECCSEEEEEEECEECCS--SCCEECCCCCBCCSSCEECGGGBSS---------------------------
T ss_pred             eeEEEEEEeecccchhhhhhhhhhcc--ccccccceeEeeccccccccccccC---------------------------
Confidence            46788999999999999999998765  34556667777775 6999888322                           


Q ss_pred             hccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCCCC
Q psy18082         84 CEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFSTDE  163 (280)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~~~  163 (280)
                                                                   ......|+|+|||+|.|++++|||+||+|++.+++
T Consensus       272 ---------------------------------------------~~~~~~Y~L~~vi~H~G~~~~GHY~~~ik~~~~~~  306 (336)
T d2hd5a1         272 ---------------------------------------------NTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGE  306 (336)
T ss_dssp             ---------------------------------------------SSCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCC
T ss_pred             ---------------------------------------------CCCCCeEeEEEEEEEeCCCCCceEEEEEEcCCCCe
Confidence                                                         12356899999999999999999999999977899


Q ss_pred             eEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        164 WYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       164 W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                      |++|||..|+++++++|..      .+||+|+|++
T Consensus       307 W~~~nD~~V~~v~~~~v~~------~~aYiL~Y~r  335 (336)
T d2hd5a1         307 WHTFNDSSVTPMSSSQVRT------SDAYLLFYEL  335 (336)
T ss_dssp             EEEEETTEEEEECGGGSCC------TTEEEEEEEE
T ss_pred             EEEEECCceeECCHHHhcc------CCCEEEEEEc
Confidence            9999999999999999964      3699996554

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.8e-23  Score=183.74  Aligned_cols=117  Identities=21%  Similarity=0.263  Sum_probs=95.3

Q ss_pred             ceEEEEEEecccCCcceEEEEEEEEEeCCcceeeccccceeccce-ecCCCCCCCcccccccccccccccccccCCCCcc
Q psy18082          3 PIVYKADALSSKHIKLAIHQDKVVDFSGTTSENITIEDLMGVTSV-ETNSPSSEPQYTFRLDYGVRKGAESNQASTNQDE   81 (280)
Q Consensus         3 ~~~~~K~~~I~~lP~vL~IhLkRF~fd~~~~~~~Ki~~~V~FP~~-Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (280)
                      .+...++..+..+|++|+||+.||.++.  ....+....+.||.. +|+..++..                         
T Consensus       230 ~~~~~~~~~~~~~p~~l~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  282 (348)
T d2gfoa1         230 RRDSLKKIEIWKLPPVLLVHLKRFSYDG--RWKQKLQTSVDFPLENLDLSQYVIG-------------------------  282 (348)
T ss_dssp             EECEEEEEEEEECCSEEEEEECCEEECS--SSEEECCCEEECCSSCBCCGGGBCS-------------------------
T ss_pred             ceeeeEEEEEEeCCccceeceeeeeccC--ccceeeccccccccccccccceecC-------------------------
Confidence            3567788899999999999999999886  456677778888764 777666321                         


Q ss_pred             hhhccccCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCceeEEEEEEEEEeecCCCceEEEEEEcCCC
Q psy18082         82 EHCEENQLDPSVSNPVITPYNGDVDEGIDISHPEPPSTSATKDPSMNAKGPYVYELFSIMIHSGSASGGHYYAYIKNFST  161 (280)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~Gs~~sGHY~~yir~~~~  161 (280)
                                                                    .......|+|+|||+|.|++++|||+||+|+..+
T Consensus       283 ----------------------------------------------~~~~~~~Y~L~avi~H~G~~~~GHY~~~ik~~~~  316 (348)
T d2gfoa1         283 ----------------------------------------------PKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAAR  316 (348)
T ss_dssp             ----------------------------------------------CCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTT
T ss_pred             ----------------------------------------------CCCCCCCEEEEEEEEEeCCCCCceEEEEEEeCCc
Confidence                                                          1123468999999999999999999999999778


Q ss_pred             CCeEEecCceeEEeChhhhhhhcCCCCCeEEEEEeec
Q psy18082        162 DEWYCFNDQSVTRITDEDIHKSYGGGPARGYYSGFED  198 (280)
Q Consensus       162 ~~W~~fnD~~V~~v~~~~V~~~~gg~~~~aY~L~~~~  198 (280)
                      ++||+|||+.|+++++++|.+      .+||+|+|+|
T Consensus       317 ~~W~~~nD~~V~~v~~~~v~~------~~aYlLfY~r  347 (348)
T d2gfoa1         317 QRWFKFDDHEVSDISVSSVKS------SAAYILFYTS  347 (348)
T ss_dssp             TEEEEEETTEEEECCHHHHSC------TTEEEEEEEC
T ss_pred             CeEEEEECCcCeECCHHHccC------CCcEEEEEEe
Confidence            999999999999999999965      3699995443