Psyllid ID: psy18093

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-
MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
ccEEHHHHHHHHHHHHcccccHHccccccccccccccccccEEEEccccccccHHHHHHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHcccEEEEcccccccccccHHHHHHHHccccccccccccccccccccEEEHHHHHHHHHHHHcccccccccccccccccccEEEccccccccccccHHHHHHHHcccccEEEccccccccccccEEEcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHccccccccccccccccccEEEEEEEccccHHHHccccccEEEEcccccccEEEEEccccccccHHHHHHHHHHccEEEEEccccHHcHHHHHHcccEEEEccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEc
cEEEEEEEEEEEcccccccccccccccccccEEEEEEccccEEEEEcccHHHHHHHHHHHHHHcccEEEEEcHHHHHHHccccccccccHHHHHHHHHHHcccEEEccccccccccccHHHHHHHHccccccEEEcccccccccccEEEccccccccEEccccccccHHHHHHHEEcccccccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEccccccccccccEEEHHHHHHHHHHHHcccHHHHHcccccccEEEcccccccccccEEEEEEEEccccHHHccccccEEEEEEEEEccEEccccccccccccccHHHcccccccEEEEccccHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEc
MLYYRVVTFVSfqhshccqhfhacshqgfgscihtvantsthvlikdsdlgTYLSVLYssprkydsvtvakCPVALLWrvngpgvtndkwKERVVSTCLAHniavysphttwdaIQGGINDWLASIYNiseyyplvpskpekfnsMIAISHKIFRLLLRplfnnnlnleknetsikfpffavysphttwdaIQGGINDWLASIYNiseyyplvpskpekfnSMIAISHKINETDVVQHLTHIAEvafgpqqakesvtlfnpryeikaslishdipghlskenEIMINSIAVCagsggellrgkkadlyitdathRGTTVLLLEhsdselhihHVLHVYHILILGFVtgemshhdvldathRGTTVLLLEhsdserpfLQTMHTLLQIRLWHYLDWLKIYVSkadkdpigyv
MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLwrvngpgvtndkWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVskadkdpigyv
MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIfrlllrplfnnnlnlekneTSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSElhihhvlhvyhililGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
*LYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSK*********
**YYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNI*********************HKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
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MLYYRVVTFVSFQHSHCCQHFHACSHQGFGSCIHTVANTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query411 2.2.26 [Sep-21-2011]
Q9NK57292 NIF3-like protein 1 OS=Dr yes N/A 0.399 0.561 0.329 2e-20
Q9EQ80376 NIF3-like protein 1 OS=Mu yes N/A 0.632 0.691 0.257 8e-20
Q05B89377 NIF3-like protein 1 OS=Bo yes N/A 0.520 0.567 0.264 5e-17
Q4V7D6376 NIF3-like protein 1 OS=Ra yes N/A 0.613 0.670 0.253 5e-13
P53081288 NGG1-interacting factor 3 yes N/A 0.428 0.611 0.266 1e-12
Q9GZT8377 NIF3-like protein 1 OS=Ho yes N/A 0.216 0.236 0.325 2e-11
Q55E83354 Protein NIF3 homolog OS=D yes N/A 0.625 0.725 0.245 5e-11
O94404278 Protein NIF3 homolog OS=S yes N/A 0.416 0.615 0.282 6e-10
P54472373 UPF0135 protein YqfO OS=B yes N/A 0.194 0.214 0.312 1e-06
Q8XIV9262 UPF0135 protein CPE2004 O yes N/A 0.484 0.759 0.228 1e-05
>sp|Q9NK57|NIF3L_DROME NIF3-like protein 1 OS=Drosophila melanogaster GN=anon-35F/36A PE=2 SV=3 Back     alignment and function desciption
 Score =  100 bits (249), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 98/231 (42%), Gaps = 67/231 (29%)

Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP--SKPEKFNSMIAISHKINETDVVQ 237
            A+YSPHT WD   GG+NDWL+   NI    PL P    P    S   I  K+  + VV+
Sbjct: 104 IALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEPELGAPPGTGSGRYIETKMELSQVVE 163

Query: 238 HLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGG 297
            L                      +  I+ S+      GH  K    +I S+ +CAGSG 
Sbjct: 164 SL----------------------QKRIRNSVHVALAVGHTPK---TLIQSVGICAGSGA 198

Query: 298 ELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
            LL+G +ADL IT                                     GEMSHH+VL+
Sbjct: 199 SLLKGIQADLIIT-------------------------------------GEMSHHEVLE 221

Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408
            TH  TTVLL  HS+SER FL   H    I      +   ++VS+ DKDP+
Sbjct: 222 FTHNNTTVLLCNHSNSERGFL---HEFCPILAKSLNEECLVFVSEVDKDPL 269

Drosophila melanogaster (taxid: 7227)
>sp|Q9EQ80|NIF3L_MOUSE NIF3-like protein 1 OS=Mus musculus GN=Nif3l1 PE=1 SV=4 Back     alignment and function description
>sp|Q05B89|NIF3L_BOVIN NIF3-like protein 1 OS=Bos taurus GN=NIF3L1 PE=2 SV=1 Back     alignment and function description
>sp|Q4V7D6|NIF3L_RAT NIF3-like protein 1 OS=Rattus norvegicus GN=Nif3l1 PE=2 SV=1 Back     alignment and function description
>sp|P53081|NIF3_YEAST NGG1-interacting factor 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NIF3 PE=1 SV=1 Back     alignment and function description
>sp|Q9GZT8|NIF3L_HUMAN NIF3-like protein 1 OS=Homo sapiens GN=NIF3L1 PE=1 SV=2 Back     alignment and function description
>sp|Q55E83|NIF3_DICDI Protein NIF3 homolog OS=Dictyostelium discoideum GN=nif3 PE=2 SV=1 Back     alignment and function description
>sp|O94404|NIF3_SCHPO Protein NIF3 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC126.12 PE=3 SV=1 Back     alignment and function description
>sp|P54472|YQFO_BACSU UPF0135 protein YqfO OS=Bacillus subtilis (strain 168) GN=yqfO PE=3 SV=2 Back     alignment and function description
>sp|Q8XIV9|Y2004_CLOPE UPF0135 protein CPE2004 OS=Clostridium perfringens (strain 13 / Type A) GN=CPE2004 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
148298856271 NIF3-like protein [Bombyx mori] gi|11438 0.394 0.597 0.316 1e-22
307197841272 NIF3-like protein 1 [Harpegnathos saltat 0.406 0.613 0.329 2e-22
198414246344 PREDICTED: similar to NIF3-like protein 0.627 0.75 0.304 7e-22
332019250272 NIF3-like protein 1 [Acromyrmex echinati 0.403 0.610 0.293 2e-21
307187515272 NIF3-like protein 1 [Camponotus floridan 0.411 0.621 0.293 5e-20
443690176295 hypothetical protein CAPTEDRAFT_2492 [Ca 0.450 0.627 0.312 1e-19
357623146272 NIF3-like protein [Danaus plexippus] 0.396 0.599 0.304 1e-19
71480080347 NIF3-like protein 1 [Danio rerio] gi|685 0.600 0.711 0.263 2e-19
195114620281 GI17077 [Drosophila mojavensis] gi|19391 0.399 0.583 0.327 3e-19
389613024302 NIF3-like protein 1, partial [Papilio xu 0.384 0.523 0.299 4e-19
>gi|148298856|ref|NP_001091745.1| NIF3-like protein [Bombyx mori] gi|114384170|gb|ABI73988.1| NIF3-like protein [Bombyx mori] Back     alignment and taxonomy information
 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 110/234 (47%), Gaps = 72/234 (30%)

Query: 180 FAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNS--MIAISHKINETDVV- 236
            A+YSPHT+WD++QGG+NDWLAS ++++E  P++ S    F +  ++ +S  I  +D V 
Sbjct: 102 IALYSPHTSWDSVQGGVNDWLASAFSVAESKPILQSNNPDFGAGRLLHLSTGIPLSDAVN 161

Query: 237 --QHLTHIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAG 294
             + LT ++ V     + K                ++H             +  +A+CAG
Sbjct: 162 RIKELTRLSHVRIAAAKGKS---------------MTH------------TVQRVALCAG 194

Query: 295 SGGELLRGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHD 354
           SG  +L+G  ADLY+T                                     GEM HHD
Sbjct: 195 SGSSVLKGVDADLYLT-------------------------------------GEMLHHD 217

Query: 355 VLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPI 408
           VLDA  +G TV+L  HSDSER FL+     L   L   ++   ++VSK DKDP+
Sbjct: 218 VLDAAQKGITVILTNHSDSERGFLRGFANYLHKNLNEEVE---VFVSKVDKDPL 268

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307197841|gb|EFN78952.1| NIF3-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|198414246|ref|XP_002121101.1| PREDICTED: similar to NIF3-like protein 1 (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 1 protein) [Ciona intestinalis] Back     alignment and taxonomy information
>gi|332019250|gb|EGI59759.1| NIF3-like protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307187515|gb|EFN72566.1| NIF3-like protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|443690176|gb|ELT92382.1| hypothetical protein CAPTEDRAFT_2492 [Capitella teleta] Back     alignment and taxonomy information
>gi|357623146|gb|EHJ74411.1| NIF3-like protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|71480080|ref|NP_001025139.1| NIF3-like protein 1 [Danio rerio] gi|68534029|gb|AAH98537.1| Zgc:110030 [Danio rerio] Back     alignment and taxonomy information
>gi|195114620|ref|XP_002001865.1| GI17077 [Drosophila mojavensis] gi|193912440|gb|EDW11307.1| GI17077 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|389613024|dbj|BAM19899.1| NIF3-like protein 1, partial [Papilio xuthus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query411
FB|FBgn0014092292 CG4278 [Drosophila melanogaste 0.128 0.181 0.566 1.2e-22
RGD|1310329376 Nif3l1 "NIF3 NGG1 interacting 0.155 0.170 0.447 3.2e-17
UNIPROTKB|Q05B89377 NIF3L1 "NIF3-like protein 1" [ 0.148 0.161 0.453 7.5e-17
MGI|MGI:1929485376 Nif3l1 "Ngg1 interacting facto 0.155 0.170 0.447 1.5e-16
UNIPROTKB|E2RQI7397 NIF3L1 "Uncharacterized protei 0.155 0.161 0.447 3.2e-16
UNIPROTKB|Q9GZT8377 NIF3L1 "NIF3-like protein 1" [ 0.155 0.169 0.432 3.6e-16
ZFIN|ZDB-GENE-050706-80425 nif3l1 "NIF3 NGG1 interacting 0.114 0.110 0.574 5.7e-15
SGD|S000003189288 NIF3 "Protein of unknown funct 0.347 0.496 0.289 6.7e-05
UNIPROTKB|F1NDR9159 NIF3L1 "Uncharacterized protei 0.155 0.402 0.462 6.3e-10
POMBASE|SPCC126.12278 SPCC126.12 "NGG1 interacting f 0.153 0.226 0.363 9.3e-08
FB|FBgn0014092 CG4278 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 176 (67.0 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
 Identities = 30/53 (56%), Positives = 37/53 (69%)

Query:    85 VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVP 137
             +T   WKERVV+ CLA++IA+YSPHT WD   GG+NDWL+   NI    PL P
Sbjct:    86 ITQSHWKERVVAACLANDIALYSPHTAWDKKSGGVNDWLSKAVNIISIRPLEP 138
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
RGD|1310329 Nif3l1 "NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q05B89 NIF3L1 "NIF3-like protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1929485 Nif3l1 "Ngg1 interacting factor 3-like 1 (S. pombe)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RQI7 NIF3L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9GZT8 NIF3L1 "NIF3-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050706-80 nif3l1 "NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
SGD|S000003189 NIF3 "Protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDR9 NIF3L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
POMBASE|SPCC126.12 SPCC126.12 "NGG1 interacting factor 3 family, implicated in transcription" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
pfam01784237 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3) 1e-21
COG0327250 COG0327, COG0327, Uncharacterized conserved protei 3e-11
pfam01784237 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3) 4e-11
TIGR00486249 TIGR00486, YbgI_SA1388, dinuclear metal center pro 3e-09
TIGR00486249 TIGR00486, YbgI_SA1388, dinuclear metal center pro 2e-06
COG0327250 COG0327, COG0327, Uncharacterized conserved protei 9e-06
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3) Back     alignment and domain information 
 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 66/209 (31%)

Query: 181 AVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT 240
           ++YS HT  DA  GG+NDWLA +  +    PL PS  E                    L 
Sbjct: 90  SLYSAHTNLDAAPGGVNDWLAELLGLESIEPLEPSVSEGEG-----------------LG 132

Query: 241 HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELL 300
            I E+        E ++L      +K  L    +   +  + +  I  +A+C GSGG L+
Sbjct: 133 RIGEL-------PEPISLEELAKRVKERLGLEGV--RVVGDLDKPIKKVAICGGSGGSLI 183

Query: 301 ---RGKKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLD 357
              + K ADL I                                     TGE+ HHD LD
Sbjct: 184 EEAKAKGADLLI-------------------------------------TGELKHHDALD 206

Query: 358 ATHRGTTVLLLEHSDSERPFLQTMHTLLQ 386
           A  +G  ++   H  +ER  L+ +  LL+
Sbjct: 207 AKEKGIALIDAGHYATERFGLKALAELLK 235

This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown. Length = 237
>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|216697 pfam01784, NIF3, NIF3 (NGG1p interacting factor 3) Back     alignment and domain information
>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388 family Back     alignment and domain information
>gnl|CDD|213534 TIGR00486, YbgI_SA1388, dinuclear metal center protein, YbgI/SA1388 family Back     alignment and domain information
>gnl|CDD|223404 COG0327, COG0327, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 411
TIGR00486249 YbgI_SA1388 dinuclear metal center protein, YbgI/S 100.0
PF01784241 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: 100.0
KOG4131|consensus272 100.0
PRK10799247 metal-binding protein; Provisional 100.0
COG0327250 Uncharacterized conserved protein [Function unknow 100.0
COG3323109 Uncharacterized protein conserved in bacteria [Fun 98.21
PF01784241 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: 94.56
KOG4131|consensus272 94.45
PRK10799247 metal-binding protein; Provisional 93.4
TIGR00486249 YbgI_SA1388 dinuclear metal center protein, YbgI/S 93.17
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family Back     alignment and domain information 
Probab=100.00  E-value=3.6e-47  Score=361.44  Aligned_cols=212  Identities=23%  Similarity=0.254  Sum_probs=190.4

Q ss_pred             CccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCC
Q psy18093         38 NTSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQG  117 (411)
Q Consensus        38 ~t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~g  117 (411)
                      ..-++|++.   +|.|.+|+++|+++++++||+|||++|   +|+++++.+.+++| +.+|+||||+|||+|||||++++
T Consensus        34 ~~v~~I~~a---lD~t~~vi~~Ai~~~~dlIitHHP~~f---~~~~~~~~~~~~~~-~~~li~~~I~vy~~Ht~lD~~~~  106 (249)
T TIGR00486        34 EEVKKVVVA---VDASESVADEAVRLGADLIITHHPLIW---KPLKRLIRGIKPGR-LKILLQNDISLYSAHTNLDAHDG  106 (249)
T ss_pred             cccCEEEEE---ecCCHHHHHHHHHCCCCEEEEcCcccc---CCcccccCCCHHHH-HHHHHHCCCeEEEeecchhcCCC
Confidence            345667777   788999999999999999999999988   99999988888888 99999999999999999999999


Q ss_pred             ChHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceeccccccccHH
Q psy18093        118 GINDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGIN  197 (411)
Q Consensus       118 GVNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g~~  197 (411)
                      |+|+|||+.||+++.+++.+.             ++|+++                                        
T Consensus       107 G~n~~La~~Lgl~~~~~~~~~-------------g~G~vg----------------------------------------  133 (249)
T TIGR00486       107 GNNDALARALGLENPKEFEDY-------------GLGRVG----------------------------------------  133 (249)
T ss_pred             CHHHHHHHHcCCCccccccCC-------------CceeEE----------------------------------------
Confidence            999999999999887665431             566653                                        


Q ss_pred             HHHHhhcCCCccccCCCCCCeeeccCCCHHHhhcHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCC
Q psy18093        198 DWLASIYNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPG  276 (411)
Q Consensus       198 ~~l~~~~~~~~~~~l~~~~~~~l~~~i~~~~~i~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g  276 (411)
                                           .++++++++++++  +|++.|+ +.+|++++                            
T Consensus       134 ---------------------~l~~~~~~~~~~~--~vk~~l~~~~vr~~~~----------------------------  162 (249)
T TIGR00486       134 ---------------------EFKAPIESLEEVL--EIKKVLNVKPLLVVKN----------------------------  162 (249)
T ss_pred             ---------------------ECCCCCCHHHHHH--HHHHHhCCCCEEEeCC----------------------------
Confidence                                 5667899999999  9999999 89999863                            


Q ss_pred             CCCcccCCceeEEEEEecCccchhhc---CCCcEEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchH
Q psy18093        277 HLSKENEIMINSIAVCAGSGGELLRG---KKADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHH  353 (411)
Q Consensus       277 ~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h  353 (411)
                           .+++|+|||||+|||++++..   ++||+||                                     |||++||
T Consensus       163 -----~~~~i~rVAi~~GsG~~~~~~a~~~gaD~~I-------------------------------------TGd~k~h  200 (249)
T TIGR00486       163 -----GPEYVKKVAVVSGSGLSFIMKALREGVDAYI-------------------------------------TGDLSHH  200 (249)
T ss_pred             -----CCCceeEEEEEcCchHHHHHHHHHcCCCEEE-------------------------------------ecCCchH
Confidence                 367899999999999998865   4899999                                     9999999


Q ss_pred             HHHHHHHcCCeEEEcCChhchHHHHHHHHHHHHHHhccCCCcEEEEEEcCCCCC
Q psy18093        354 DVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDP  407 (411)
Q Consensus       354 ~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~~~~~~~~~~~~i~~s~~~~dP  407 (411)
                      ++++|.+.|++||++|||.||+++++.|+++|++++     .+++.+++.++||
T Consensus       201 ~~~~A~~~gi~li~~gH~~sE~~~~~~la~~L~~~~-----~i~v~~~~~~~~~  249 (249)
T TIGR00486       201 TAHLARELGLNVIDAGHYATERGGLRKLMEDLNENE-----GLEVVFSDIPTNA  249 (249)
T ss_pred             HHHHHHHCCCEEEEcCcHHHHHHHHHHHHHHHHHhc-----CceEEEEeCCCCC
Confidence            999999999999999999999999999999999876     2899999999998

The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues Back     alignment and domain information
>KOG4131|consensus Back     alignment and domain information
>PRK10799 metal-binding protein; Provisional Back     alignment and domain information
>COG0327 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3323 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues Back     alignment and domain information
>KOG4131|consensus Back     alignment and domain information
>PRK10799 metal-binding protein; Provisional Back     alignment and domain information
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
2gx8_A397 The Crystal Stucture Of Bacillus Cereus Protein Rel 1e-05
>pdb|2GX8|A Chain A, The Crystal Stucture Of Bacillus Cereus Protein Related To Nif3 Length = 397 Back     alignment and structure 
Iteration: 1

 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 88  DKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSMI 147
           DK   +++  C+ ++IA+Y+ HT  D  +GG+ND LA    +     L P+  E+   ++
Sbjct: 106 DKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMKKVV 165

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query411
2nyd_A370 UPF0135 protein SA1388; hypothetical protein SA138 1e-32
2fyw_A267 Conserved hypothetical protein; structural genomic 5e-27
2fyw_A267 Conserved hypothetical protein; structural genomic 7e-13
2gx8_A397 NIF3-related protein; structural genomics, unknown 2e-26
2yyb_A242 Hypothetical protein TTHA1606; structural genomics 2e-15
2yyb_A242 Hypothetical protein TTHA1606; structural genomics 1e-06
1nmo_A247 Hypothetical protein YBGI; toroidal structure, str 2e-15
1nmo_A247 Hypothetical protein YBGI; toroidal structure, str 5e-08
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Length = 370 Back     alignment and structure
 Score =  125 bits (315), Expect = 1e-32
 Identities = 59/334 (17%), Positives = 105/334 (31%), Gaps = 52/334 (15%)

Query: 87  NDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFNSM 146
                  ++   + H+I + + HT  D    G+N  LA +  +     +   +   +   
Sbjct: 80  KANGYGLIIRKLIQHDINLIAMHTNLDVNPYGVNMMLAKVMGLKNISIINNQQDVYYKVQ 139

Query: 147 IAISHKIFRLLLRPLFNNNLNLEKNETSIKFPF--FAVYSPHTTWDAIQGGINDWLASIY 204
             I           L  N L  E N     F       + P    +   G I+       
Sbjct: 140 TYIPKDNVGPFKDKLSENGLAQEGNYEYCFFESEGRGQFKPVGEANPTIGQIDKIEDVDE 199

Query: 205 NISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTHIAEVAFGPQ---QAKESVTLFNP 261
              E+   + +  +     +   +   ET V   +       +G     +    +TL + 
Sbjct: 200 VKIEFM--IDAYQKSRAEQLIKQYHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDF 257

Query: 262 RYEIKASLISHDIPG-HLSKENEIMINSIAVCAGSGGELL---RGKKADLYITDATHRGT 317
             +IK+ L   +IP      E+   I  IA+  GSG         + AD+++        
Sbjct: 258 AADIKSKL---NIPSVRFVGESNQKIKRIAIIGGSGIGYEYQAVQQGADVFV-------- 306

Query: 318 TVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPF 377
                                        TG++ HHD LDA   G  ++ + H  SE   
Sbjct: 307 -----------------------------TGDIKHHDALDAKIHGVNLIDINHY-SEYVM 336

Query: 378 LQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
            + + TLL          + +  S  + DP  Y+
Sbjct: 337 KEGLKTLLMNWFNIEKINIDVEASTINTDPFQYI 370
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Length = 267 Back     alignment and structure
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Length = 267 Back     alignment and structure
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Length = 397 Back     alignment and structure
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Length = 242 Back     alignment and structure
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Length = 242 Back     alignment and structure
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Length = 247 Back     alignment and structure
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
2nyd_A370 UPF0135 protein SA1388; hypothetical protein SA138 100.0
2gx8_A397 NIF3-related protein; structural genomics, unknown 100.0
2fyw_A267 Conserved hypothetical protein; structural genomic 100.0
2yyb_A242 Hypothetical protein TTHA1606; structural genomics 100.0
1nmo_A247 Hypothetical protein YBGI; toroidal structure, str 100.0
3rxy_A278 NIF3 protein; structural genomics, PSI-biology, mi 99.62
2nyd_A370 UPF0135 protein SA1388; hypothetical protein SA138 97.38
2gx8_A397 NIF3-related protein; structural genomics, unknown 97.12
2fyw_A267 Conserved hypothetical protein; structural genomic 95.32
2yyb_A242 Hypothetical protein TTHA1606; structural genomics 92.76
1nmo_A247 Hypothetical protein YBGI; toroidal structure, str 90.7
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Back     alignment and structure
Probab=100.00  E-value=7.4e-60  Score=471.68  Aligned_cols=280  Identities=18%  Similarity=0.240  Sum_probs=208.5

Q ss_pred             ccceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCC
Q psy18093         39 TSTHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGG  118 (411)
Q Consensus        39 t~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gG  118 (411)
                      .-++||+.   +|.|++||++|+++++++||+|||++|   +|+++++.+++ +|++.+||+|||+|||+|||||++++|
T Consensus        39 ~V~~Vl~a---lD~t~~Vv~eAi~~~adlIItHHPlif---~~~k~i~~~~~-~r~i~~li~~~Ialya~HTnlD~~~~G  111 (370)
T 2nyd_A           39 EVTGVLTA---LDCTLEVVNEAIEKGYNTIISHHPLIF---KGVTSLKANGY-GLIIRKLIQHDINLIAMHTNLDVNPYG  111 (370)
T ss_dssp             BCCCEEEE---SSCCHHHHHHHHHHTCCEEEESSCSSC---SCCSCCCSSTH-HHHHHHHHHTTCEEEECCHHHHTSTTS
T ss_pred             ccCEEEEE---EcCCHHHHHHHHHCCCCEEEECCCccc---CCccccCcCCH-HHHHHHHHHCCCeEEEeechhhccCCc
Confidence            34567777   788999999999999999999999998   99999999999 999999999999999999999999999


Q ss_pred             hHHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceecccccccc---
Q psy18093        119 INDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGG---  195 (411)
Q Consensus       119 VNDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g---  195 (411)
                      +|||||+.|||++.++|.|...           .+.|+++|+|.++.+.++++++++|+|.+|.|+ ||+|...+.|   
T Consensus       112 vNd~LA~~Lgl~~~~~l~~~~~-----------~~~kl~v~vP~~~~~~v~~al~~aGag~ig~Y~-~csf~~~G~G~F~  179 (370)
T 2nyd_A          112 VNMMLAKVMGLKNISIINNQQD-----------VYYKVQTYIPKDNVGPFKDKLSENGLAQEGNYE-YCFFESEGRGQFK  179 (370)
T ss_dssp             HHHHHHHHTTCEEEEECSEEEE-----------EEEEEC-----------------------------------------
T ss_pred             HHHHHHHHcCCCcccccCcccc-----------ccceeEEecchhhHHHHHHHHHhcccccccccc-cceecccccceec
Confidence            9999999999999999987532           377999999999999999999999999999999 9999975444   


Q ss_pred             ----------------------------------HHHHHHhhcCCCc-----cccCCCC------CCeeeccCCCHHHhh
Q psy18093        196 ----------------------------------INDWLASIYNISE-----YYPLVPS------KPEKFNSMIAISHKI  230 (411)
Q Consensus       196 ----------------------------------~~~~l~~~~~~~~-----~~~l~~~------~~~~l~~~i~~~~~i  230 (411)
                                                        +.+.|.+ .||||     .+|+.+.      ..++|++|+++++|+
T Consensus       180 p~~~a~P~ig~~g~~~~v~e~rie~i~~~~~~~~v~~al~~-~hpyee~ayd~~~l~~~~~~GlGriG~L~~p~tl~~~~  258 (370)
T 2nyd_A          180 PVGEANPTIGQIDKIEDVDEVKIEFMIDAYQKSRAEQLIKQ-YHPYETPVFDFIEIKQTSLYGLGVMAEVDNQMTLEDFA  258 (370)
T ss_dssp             -----------------------CEEECSTHHHHHHHHHCC------CCCCCEEEEEEEEEEESCEEEEEEEEEEHHHHH
T ss_pred             cccccCCccccccccccccceEEEEEechhhHHHHHHHHHh-hCCccccccccccccccCCCCeEEEEEcCCCCCHHHHH
Confidence                                              2222222 45554     3343211      237788899999999


Q ss_pred             cHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCCCcccCCceeEEEEEecCccchhhc---CCCc
Q psy18093        231 NETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRG---KKAD  306 (411)
Q Consensus       231 ~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD  306 (411)
                      +  +||++|+ +.+|++++                                 .+++|+|||||+|||++++..   ++||
T Consensus       259 ~--~vk~~l~~~~vr~~g~---------------------------------~~~~I~~VAvc~GsG~~~i~~a~~~gaD  303 (370)
T 2nyd_A          259 A--DIKSKLNIPSVRFVGE---------------------------------SNQKIKRIAIIGGSGIGYEYQAVQQGAD  303 (370)
T ss_dssp             H--HHHHHTTCSCCEEESC---------------------------------TTCEEEEEEECCSCCTTSHHHHHHTTCS
T ss_pred             H--HHHHHcCCCceEEecC---------------------------------CCCcccEEEEEcCCCHHHHHHHHHcCCC
Confidence            9  9999999 88999863                                 367899999999999999975   4999


Q ss_pred             EEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHH
Q psy18093        307 LYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQ  386 (411)
Q Consensus       307 ~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~  386 (411)
                      +||                                     |||+|||+++||.++|++|||+|||.|| ++++.|.++|+
T Consensus       304 vyI-------------------------------------TGD~~~H~~~~A~~~gi~vid~GH~~tE-~~~~~l~~~L~  345 (370)
T 2nyd_A          304 VFV-------------------------------------TGDIKHHDALDAKIHGVNLIDINHYSEY-VMKEGLKTLLM  345 (370)
T ss_dssp             EEE-------------------------------------ESCCCHHHHHHHHHTTCCEEECCGGGGG-GHHHHHHHHHH
T ss_pred             EEE-------------------------------------eCCccHHHHHHHHHCCCcEEEcCchHHH-HHHHHHHHHHH
Confidence            999                                     9999999999999999999999999999 99999999999


Q ss_pred             HHhccCCCcEEEEEEcCCCCCceeC
Q psy18093        387 IRLWHYLDWLKIYVSKADKDPIGYV  411 (411)
Q Consensus       387 ~~~~~~~~~~~i~~s~~~~dP~~~v  411 (411)
                      ++|+...+.+++++|+.++|||.|+
T Consensus       346 ~~~~~~~~~v~v~~s~~~~dP~~~~  370 (370)
T 2nyd_A          346 NWFNIEKINIDVEASTINTDPFQYI  370 (370)
T ss_dssp             HHHHHTTCCCCEEECCCCCCSCEEC
T ss_pred             HHhcccCCceEEEEEecCCCCceEC
Confidence            9997555569999999999999985
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Back     alignment and structure
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Back     alignment and structure
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Back     alignment and structure
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Back     alignment and structure
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus} Back     alignment and structure
>2nyd_A UPF0135 protein SA1388; hypothetical protein SA1388, selenomethionine SAD, unknown F; 2.00A {Staphylococcus aureus subsp} PDB: 3lnl_A* Back     alignment and structure
>2gx8_A NIF3-related protein; structural genomics, unknown function, protein structure initiative, midwest center for structural genomics, MCSG; HET: EPE; 2.20A {Bacillus cereus} SCOP: c.135.1.1 Back     alignment and structure
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1 Back     alignment and structure
>2yyb_A Hypothetical protein TTHA1606; structural genomics, unknown function; 2.60A {Thermus thermophilus} Back     alignment and structure
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 411
d2gx8a1370 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {B 1e-21
d2fywa1265 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {S 2e-14
d2fywa1265 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {S 2e-06
d1nmpa_247 c.135.1.1 (A:) Hypothetical protein YbgI {Escheric 3e-08
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Length = 370 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

 Score = 93.2 bits (231), Expect = 1e-21
 Identities = 65/348 (18%), Positives = 118/348 (33%), Gaps = 74/348 (21%)

Query: 85  VTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGINDWLASIYNISEYYPLVPSKPEKFN 144
           +  DK   +++  C+ ++IA+Y+ HT  D  +GG+ND LA    +     L P+  E+  
Sbjct: 76  IHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGVNDLLAEALGLQNTEVLAPTYAEEMK 135

Query: 145 SMIA-ISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGGINDWLASI 203
            ++  +       + + L +       N +   F      S  T     Q G N ++   
Sbjct: 136 KVVVFVPVTHAEEVRKALGDAGAGHIGNYSHCTFS-----SEGTGTFVPQEGTNPYIGET 190

Query: 204 YNISEYYPLVPSKPEKFNSMIAISHKINETDVVQHLTH-IAEVAFGPQQAK--------- 253
             +           E     I  +    +        H   EVA+               
Sbjct: 191 GQLERV-------EEVRIETIIPASLQRKVIKAMVTAHPYEEVAYDVYPLDNKGETLGLG 243

Query: 254 ------ESVTLFNPRYEIKASLISHDIPG-HLSKENEIMINSIAVCAGSGGELL---RGK 303
                 E +TL      +K SL   D+ G  +  + +  +  +AV  G G + +   + K
Sbjct: 244 KIGYLQEEMTLGQFAEHVKQSL---DVKGARVVGKLDDKVRKVAVLGGDGNKYINQAKFK 300

Query: 304 KADLYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGT 363
            AD+Y+                                     TG+M +H   DA   G 
Sbjct: 301 GADVYV-------------------------------------TGDMYYHVAHDAMMLGL 323

Query: 364 TVLLLEHSDSERPFLQTMHTLLQIRLWHYLDWLKIYVSKADKDPIGYV 411
            ++   H+  E+   Q +   LQ ++      + I+ S+   DP  +V
Sbjct: 324 NIVDPGHN-VEKVMKQGVQKQLQEKVDAKKLNVHIHASQLHTDPFIFV 370
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Length = 265 Back     information, alignment and structure
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Length = 265 Back     information, alignment and structure
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Length = 247 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query411
d2gx8a1370 Nif3-related protein BC4286 {Bacillus cereus [TaxI 100.0
d2fywa1265 Hypothetical protein SP1609 {Streptococcus pneumon 100.0
d1nmpa_247 Hypothetical protein YbgI {Escherichia coli [TaxId 100.0
d2gx8a1370 Nif3-related protein BC4286 {Bacillus cereus [TaxI 95.07
d2fywa1265 Hypothetical protein SP1609 {Streptococcus pneumon 88.43
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NIF3 (NGG1p interacting factor 3)-like
superfamily: NIF3 (NGG1p interacting factor 3)-like
family: NIF3 (NGG1p interacting factor 3)-like
domain: Nif3-related protein BC4286
species: Bacillus cereus [TaxId: 1396]

Probab=100.00  E-value=3.1e-58  Score=457.28  Aligned_cols=281  Identities=25%  Similarity=0.319  Sum_probs=246.9

Q ss_pred             cceEEecCCCccchHHHHhcccccCCceEEEcCCceeeccCCCCccCCCChHHHHHHHHHHcCceEEeccccccCCCCCh
Q psy18093         40 STHVLIKDSDLGTYLSVLYSSPRKYDSVTVAKCPVALLWRVNGPGVTNDKWKERVVSTCLAHNIAVYSPHTTWDAIQGGI  119 (411)
Q Consensus        40 ~~~~l~~~~~l~~~~~vl~~a~~~~~~~ii~hhPl~~~~~~pLK~It~d~~K~rvv~~LIkngIALYSaHTNLDaa~gGV  119 (411)
                      =.+|++.   +|.|++||++|+++++++||+|||++|   +|+++++.+++++|++.+|++|||+|||+|||||++++|+
T Consensus        37 V~~I~va---lD~t~~vi~eAi~~~adlIItHHPl~f---~~~k~l~~~~~~~~~~~~li~~~I~vys~HTnlD~~~~G~  110 (370)
T d2gx8a1          37 VRHVLIA---LDVTEEVVDEAIQLGANVIIAHHPLIF---NPLKAIHTDKAYGKIIEKCIKNDIAIYAAHTNVDVAKGGV  110 (370)
T ss_dssp             CCEEEEE---SSCCHHHHHHHHHHTCCEEEESSCSCC---SCCSCCCTTSHHHHHHHHHHHTTCEEEECCHHHHHSTTSH
T ss_pred             cCEEEEE---EcCCHHHHHHHHHCCCCEEEECCCCCc---CCcccccCCCchhHHHHHHHHCCCeEEEeccchhccCCcH
Confidence            3677777   688999999999999999999999998   9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCccceecCCCCCcccchhhhhccceeEEEEccCCCchHhHhhccccCCCCCcccccceecccccccc----
Q psy18093        120 NDWLASIYNISEYYPLVPSKPEKFNSMIAISHKIFRLLLRPLFNNNLNLEKNETSIKFPFFAVYSPHTTWDAIQGG----  195 (411)
Q Consensus       120 NDwLAe~LGL~~~~pL~p~~~~~~~~~~~~~~glGKL~v~vp~~~~~~~~~~~~~~~~~~~~~y~~h~~~d~~~~g----  195 (411)
                      |||||+.|||++.++|.|....          ...|+++|+|..+.+.+++..+.+|++.++.|+ +|+|...+.|    
T Consensus       111 nd~La~~Lgl~~~~~l~~~~~~----------~~~~~~~~~p~~~~~~~~~~~~~agag~ig~y~-~~~~~~~g~G~~~~  179 (370)
T d2gx8a1         111 NDLLAEALGLQNTEVLAPTYAE----------EMKKVVVFVPVTHAEEVRKALGDAGAGHIGNYS-HCTFSSEGTGTFVP  179 (370)
T ss_dssp             HHHHHHHTTCEEEEEEEEEEEE----------EEEEEEEEECHHHHHHHHHHHHHTTTTCBTTEE-EEEEEEEEEEEEEE
T ss_pred             HHHHHHHhCCCccccccccccc----------cccceEEEeChhhhhhhhhcchhcCCCcccccc-cccccccCcccccC
Confidence            9999999999999999887543          456999999999999999999999999999999 9988765433    


Q ss_pred             ---HH------------------------------HHHHhhcCCCcc-----ccCCCC-------CCeeeccCCCHHHhh
Q psy18093        196 ---IN------------------------------DWLASIYNISEY-----YPLVPS-------KPEKFNSMIAISHKI  230 (411)
Q Consensus       196 ---~~------------------------------~~l~~~~~~~~~-----~~l~~~-------~~~~l~~~i~~~~~i  230 (411)
                         .+                              ..|.+ .+|++.     +++.+.       .-+.+++++++++|+
T Consensus       180 ~~~~~P~ig~~~~~~~~~e~~~e~~~~~~~~~~v~~al~~-ahpy~~~~~~~~~~~~~~~~~G~Grig~l~~p~~l~~~~  258 (370)
T d2gx8a1         180 QEGTNPYIGETGQLERVEEVRIETIIPASLQRKVIKAMVT-AHPYEEVAYDVYPLDNKGETLGLGKIGYLQEEMTLGQFA  258 (370)
T ss_dssp             C-----------CCEEEEEEEEEEEEEGGGHHHHHHHHHH-HSSSSSCCEEEEEEEEEEEEEEEEEEEEEEEEEEHHHHH
T ss_pred             CCCCCCccCcCCceeecchhheeeechHHHHHHHHHHHHH-hCCcchhhhhhccccccccccCcceEEEeCCcccHHHHH
Confidence               11                              12222 456542     222221       127899999999999


Q ss_pred             cHhhHHHhcC-CcEEEeccCCcccccccccCchhhhhhhhcccCCCCCCCcccCCceeEEEEEecCccchhhc---CCCc
Q psy18093        231 NETDVVQHLT-HIAEVAFGPQQAKESVTLFNPRYEIKASLISHDIPGHLSKENEIMINSIAVCAGSGGELLRG---KKAD  306 (411)
Q Consensus       231 ~~~~v~~~L~-~~~~~a~~~~~~~~~~~l~~~~~~~k~~l~~~~~~g~~~~~~~~~I~~iAvc~GsG~~ll~~---~~aD  306 (411)
                      +  +||+.|+ +.+|+.+                                 +.+++|+|||||+|||++++..   ++||
T Consensus       259 ~--~vk~~l~~~~vr~~g---------------------------------~~~~~I~~VAvc~GSG~s~i~~a~~~gaD  303 (370)
T d2gx8a1         259 E--HVKQSLDVKGARVVG---------------------------------KLDDKVRKVAVLGGDGNKYINQAKFKGAD  303 (370)
T ss_dssp             H--HHHHHTTCSCCEEES---------------------------------CTTSEEEEEEEEEEECGGGHHHHHHTTCS
T ss_pred             H--HHHHHcCCCeEEEeC---------------------------------CCCCceeEEEEEccccHHHHHHHHHCCCC
Confidence            9  9999999 9999986                                 3478999999999999999986   4899


Q ss_pred             EEEecCCCCCeeeeecccCCccceeeeeeeeeeeecccCcccccchHHHHHHHHcCCeEEEcCChhchHHHHHHHHHHHH
Q psy18093        307 LYITDATHRGTTVLLLEHSDSELHIHHVLHVYHILILGFVTGEMSHHDVLDATHRGTTVLLLEHSDSERPFLQTMHTLLQ  386 (411)
Q Consensus       307 ~yI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~TGe~~~h~~lda~~~g~~vi~~gH~~sE~~~~~~l~~~L~  386 (411)
                      +||                                     |||+|||+++||.++|++||++||+ ||++|++.|.++|+
T Consensus       304 v~I-------------------------------------TGe~k~h~~~dA~~~gi~lId~GH~-sE~~~~~~l~~~L~  345 (370)
T d2gx8a1         304 VYV-------------------------------------TGDMYYHVAHDAMMLGLNIVDPGHN-VEKVMKQGVQKQLQ  345 (370)
T ss_dssp             EEE-------------------------------------EECCCHHHHHHHHHHTCEEEECCGG-GGGHHHHHHHHHHH
T ss_pred             EEE-------------------------------------EcCCcHHHHHHHHHcCCEEEECCch-hhHHHHHHHHHHHH
Confidence            999                                     9999999999999999999999997 99999999999999


Q ss_pred             HHhccCCCcEEEEEEcCCCCCceeC
Q psy18093        387 IRLWHYLDWLKIYVSKADKDPIGYV  411 (411)
Q Consensus       387 ~~~~~~~~~~~i~~s~~~~dP~~~v  411 (411)
                      ++|......++|.+|+.++|||+|+
T Consensus       346 ~~~~~~~~~i~v~~S~~~~dP~~~i  370 (370)
T d2gx8a1         346 EKVDAKKLNVHIHASQLHTDPFIFV  370 (370)
T ss_dssp             HHHHHTTCCCEEEECCCCCCCCCCC
T ss_pred             HHhcccCCceEEEEecCCCCCceeC
Confidence            9997666679999999999999996
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gx8a1 c.135.1.1 (A:4-373) Nif3-related protein BC4286 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2fywa1 c.135.1.1 (A:1-265) Hypothetical protein SP1609 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure