Psyllid ID: psy18100

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTANVA
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHccccEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHcccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHccccccEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MLATILdlnmvgpgevdsdlepevkeecntkygenmvgpgevdsdlepevkdecnTKYGEVVRVIIHelpttanva
Flexible Loop (DISEMBL)
mlatildlnmvgpgevdsdlepEVKEECntkygenmvgpgevdsdlepEVKDECNTKYGEVVRVIIHelpttanva
Low Complexity Region (SEG)
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTANVA
Disordered region (IsUnstruct)
*****************************************************CNTKYGEVVRVIIHEL*******
Disordered Region (DISOPRED)
*LATIL*LNM*****************CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE*PT*****
Disordered Region (DISEMBL)
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTANVA
Disordered Region (DISPRO)
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLATILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTANVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
P42698	387	DNA-damage-repair/tolerat	yes	N/A	0.460	0.090	0.611	0.0002
Q8JZX4	405	Splicing factor 45 OS=Mus	yes	N/A	0.473	0.088	0.594	0.0003
Q96I25	401	Splicing factor 45 OS=Hom	yes	N/A	0.473	0.089	0.594	0.0003
Q6IQE0	516	Poly(U)-binding-splicing	no	N/A	0.434	0.063	0.617	0.0007

>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
            NMVGPG+VD +LE EV  EC  KYG V RV+I E+
Sbjct: 288 RNMVGPGQVDDELEDEVGGECG-KYGTVTRVLIFEI 322

Seems to be involved in the resistance to UV light and chemical DNA-damaging agents.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8JZX4|SPF45_MOUSE Splicing factor 45 OS=Mus musculus GN=Rbm17 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
            NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct: 314 RNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349

Splice factor that binds to the single stranded 3'AG at the exon/intron border and promotes its utilization in the second catalytic step. Involved in the regulation of alternative splicing and the utilization of cryptic splice sites.

Mus musculus (taxid: 10090)

>sp|Q96I25|SPF45_HUMAN Splicing factor 45 OS=Homo sapiens GN=RBM17 PE=1 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
            NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct: 310 RNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345

Splice factor that binds to the single stranded 3'AG at the exon/intron border and promotes its utilization in the second catalytic step. Involved in the regulation of alternative splicing and the utilization of cryptic splice sites. Promotes the utilization of a cryptic splice site created by the beta-110 mutation in the HBB gene. The resulting frameshift leads to sickle cell anemia.

Homo sapiens (taxid: 9606)

>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2

 Score = 42.7 bits (99), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/34 (61%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 35  NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
           NMVGP ++D DLE EV +EC  KYG V RVII++
Sbjct: 425 NMVGPEDIDDDLEGEVMEECG-KYGAVNRVIIYQ 457

DNA- and RNA-binding protein, involved in transcription repression and pre-mRNA splicing.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
383858690	382	PREDICTED: splicing factor 45-like [Mega	0.526	0.104	0.8	9e-11
332022266	383	Splicing factor 45 [Acromyrmex echinatio	0.473	0.093	0.861	1e-10
312382254	178	hypothetical protein AND_05136 [Anophele	0.763	0.325	0.586	1e-10
322800820	242	hypothetical protein SINV_12429 [Solenop	0.473	0.148	0.861	2e-10
66516089	381	PREDICTED: splicing factor 45-like [Apis	0.697	0.139	0.649	3e-10
242015516	402	Splicing factor, putative [Pediculus hum	0.473	0.089	0.833	3e-10
340719031	382	PREDICTED: splicing factor 45-like [Bomb	0.697	0.138	0.649	3e-10
350399021	383	PREDICTED: splicing factor 45-like [Bomb	0.697	0.138	0.649	4e-10
307184500	380	Splicing factor 45 [Camponotus floridanu	0.697	0.139	0.649	6e-10
156542185	383	PREDICTED: splicing factor 45 [Nasonia v	0.460	0.091	0.857	7e-10

>gi|383858690|ref|XP_003704832.1| PREDICTED: splicing factor 45-like [Megachile rotundata]

 Score = 70.9 bits (172), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 34/40 (85%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA 73
            NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+   A
Sbjct: 292 RNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEVTEAA 331

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022266|gb|EGI62581.1| Splicing factor 45 [Acromyrmex echinatior]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/36 (86%), Positives = 34/36 (94%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
            NMVGPGEVD+DLEPEVKDECNTKYG+V RVIIHE+
Sbjct: 293 RNMVGPGEVDNDLEPEVKDECNTKYGDVARVIIHEV 328

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382254|gb|EFR27775.1| hypothetical protein AND_05136 [Anopheles darlingi]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 41/58 (70%)

Query: 13  PGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
           P    S  EP + E   +    NMVGPG+VD +LEPEVKDECNTKYG+VV V+IHE+P
Sbjct: 67  PQRTGSATEPSITEIMKSPSKVNMVGPGDVDDELEPEVKDECNTKYGDVVTVVIHEVP 124

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800820|gb|EFZ21695.1| hypothetical protein SINV_12429 [Solenopsis invicta]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/36 (86%), Positives = 33/36 (91%)

Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
            NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+
Sbjct: 152 RNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEV 187

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66516089|ref|XP_393194.2| PREDICTED: splicing factor 45-like [Apis mellifera] gi|380028015|ref|XP_003697707.1| PREDICTED: splicing factor 45-like [Apis florea]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)

Query: 21  EPEVKE--ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA 73
           EP + E  +C +K     NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+   A
Sbjct: 274 EPSITEIMKCPSKVVLLRNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEVTEAA 330

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015516|ref|XP_002428399.1| Splicing factor, putative [Pediculus humanus corporis] gi|212513011|gb|EEB15661.1| Splicing factor, putative [Pediculus humanus corporis]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/36 (83%), Positives = 34/36 (94%)

Query: 35  NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
           NMVGPGEVD DLEPEVKDECNTKYGEV++V+I E+P
Sbjct: 313 NMVGPGEVDDDLEPEVKDECNTKYGEVIKVLIFEMP 348

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719031|ref|XP_003397961.1| PREDICTED: splicing factor 45-like [Bombus terrestris]

 Score = 68.9 bits (167), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)

Query: 21  EPEVKE--ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA 73
           EP + E  +C +K     NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+   A
Sbjct: 275 EPSITEIMKCPSKVVLLRNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEVTEAA 331

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399021|ref|XP_003485388.1| PREDICTED: splicing factor 45-like [Bombus impatiens]

 Score = 68.9 bits (167), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)

Query: 21  EPEVKE--ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA 73
           EP + E  +C +K     NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+   A
Sbjct: 276 EPSITEIMKCPSKVVLLRNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEVTEAA 332

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184500|gb|EFN70889.1| Splicing factor 45 [Camponotus floridanus]

 Score = 68.2 bits (165), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/57 (64%), Positives = 42/57 (73%), Gaps = 4/57 (7%)

Query: 21  EPEVKE--ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTA 73
           EP + E  +C +K     NMVGPGEVD DLEPEVKDECNTKYG+V RVIIHE+   A
Sbjct: 273 EPSITEIMKCPSKVVLLRNMVGPGEVDDDLEPEVKDECNTKYGDVARVIIHEVIEAA 329

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542185|ref|XP_001599827.1| PREDICTED: splicing factor 45 [Nasonia vitripennis]

 Score = 67.8 bits (164), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/35 (85%), Positives = 34/35 (97%)

Query: 35  NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
           NMVGPGEVD DLEPEVKDECNTKYG+V+RV+IHE+
Sbjct: 294 NMVGPGEVDDDLEPEVKDECNTKYGDVIRVVIHEV 328

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
FB|FBgn0086683	403	Spf45 "Spf45" [Drosophila mela	0.723	0.136	0.563	5.9e-11
ZFIN|ZDB-GENE-040426-817	418	rbm17 "RNA binding motif prote	0.552	0.100	0.577	1.8e-06
UNIPROTKB|E2RMQ0	401	RBM17 "Uncharacterized protein	0.684	0.129	0.5	2.1e-06
UNIPROTKB|E1BUJ1	405	RBM17 "Uncharacterized protein	0.710	0.133	0.482	2.2e-06
UNIPROTKB|A7MB77	401	RBM17 "RBM17 protein" [Bos tau	0.684	0.129	0.5	2.7e-06
UNIPROTKB|Q96I25	401	RBM17 "Splicing factor 45" [Ho	0.684	0.129	0.5	2.7e-06
MGI|MGI:1924188	405	Rbm17 "RNA binding motif prote	0.684	0.128	0.5	2.8e-06
RGD|1311208	405	Rbm17 "RNA binding motif prote	0.684	0.128	0.5	2.8e-06
UNIPROTKB|F1RUL1	406	RBM17 "Uncharacterized protein	0.684	0.128	0.5	2.8e-06
TAIR|locus:2028130	387	DRT111 "DNA-DAMAGE-REPAIR/TOLE	0.447	0.087	0.628	1.5e-05

FB|FBgn0086683 Spf45 "Spf45" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 5.9e-11, P = 5.9e-11
 Identities = 31/55 (56%), Positives = 37/55 (67%)

Query:    14 GEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
             G++   +   +K         NMVGPG+VD +LEPEVKDECNTKYGEV  VIIHE
Sbjct:   294 GDIGYSITEIMKSPSKVVLLRNMVGPGDVDEELEPEVKDECNTKYGEVNSVIIHE 348

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IGI

GO:0006281 "DNA repair" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

ZFIN|ZDB-GENE-040426-817 rbm17 "RNA binding motif protein 17" [Danio rerio (taxid:7955)]

 Score = 118 (46.6 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 26/45 (57%), Positives = 31/45 (68%)

Query:    27 ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
             +C TK     NMVG GEVD DLE E K+EC  KYG+VVR +I E+
Sbjct:   318 KCPTKVVLLRNMVGRGEVDEDLEAETKEECE-KYGKVVRCVIFEI 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RMQ0 RBM17 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 117 (46.2 bits), Expect = 2.1e-06, P = 2.1e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEAETKEECE-KYGKVGKCVIFEIP 345

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BUJ1 RBM17 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 28/58 (48%), Positives = 37/58 (63%)

Query:    15 EVDSDLEPEVKEECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             + DS+   E+ + C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   291 KADSNPLTEILK-CPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 346

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A7MB77 RBM17 "RBM17 protein" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q96I25 RBM17 "Splicing factor 45" [Homo sapiens (taxid:9606)]

 Score = 116 (45.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   291 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 345

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

MGI|MGI:1924188 Rbm17 "RNA binding motif protein 17" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   295 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000375 "RNA splicing, via transesterification reactions" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=TAS

RGD|1311208 Rbm17 "RNA binding motif protein 17" [Rattus norvegicus (taxid:10116)]

 Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   295 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 349

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|F1RUL1 RBM17 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 28/56 (50%), Positives = 35/56 (62%)

Query:    18 SDLEPEVKE-ECNTKYG--ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
             SD  P  +  +C TK     NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct:   296 SDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 350

GO:0005634 "nucleus" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TAIR|locus:2028130 DRT111 "DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 111" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query:    35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL 69
             NMVGPG+VD +LE EV  EC  KYG V RV+I E+
Sbjct:   289 NMVGPGQVDDELEDEVGGECG-KYGTVTRVLIFEI 322

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0010212 "response to ionizing radiation" evidence=RCA

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0006281 "DNA repair" evidence=IGI

GO:0009507 "chloroplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96I25	SPF45_HUMAN	No assigned EC number	0.5945	0.4736	0.0897	yes	N/A
P42698	DR111_ARATH	No assigned EC number	0.6111	0.4605	0.0904	yes	N/A
Q8JZX4	SPF45_MOUSE	No assigned EC number	0.5945	0.4736	0.0888	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
cd12647	96	cd12647, RRM_UHM_SPF45, RNA recognition motif in U	4e-13
cd12648	98	cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 i	4e-09
cd12374	85	cd12374, RRM_UHM_SPF45_PUF60, RNA recognition moti	2e-08
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	1e-05
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	0.001

>gnl|CDD|241091 cd12647, RRM_UHM_SPF45, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 58.1 bits (141), Expect = 4e-13
 Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 27/69 (39%)

Query: 5  ILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV 64
          +L  NMVGPGEVD DLEPEVKEEC                           +KYG+V +V
Sbjct: 5  VLLRNMVGPGEVDEDLEPEVKEEC---------------------------SKYGKVTKV 37

Query: 65 IIHELPTTA 73
          +I E+P  +
Sbjct: 38 LIFEIPGAS 46

This subgroup corresponds to the RRM of SPF45, also termed RNA-binding motif protein 17 (RBM17), an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. . Length = 96

>gnl|CDD|241092 cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

 Score = 48.2 bits (115), Expect = 4e-09
 Identities = 20/34 (58%), Positives = 26/34 (76%), Gaps = 1/34 (2%)

Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
          NMVGP ++D DLE EV +EC  K+G V RVII++
Sbjct: 8  NMVGPEDLDDDLEGEVTEEC-GKFGAVNRVIIYQ 40

This subgroup corresponds to the RRM3 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1), an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. The research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 98

>gnl|CDD|240820 cd12374, RRM_UHM_SPF45_PUF60, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 46.1 bits (110), Expect = 2e-08
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 27/66 (40%)

Query: 5  ILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV 64
          ++  NMV PGE+D DL+ E++EEC                            KYG+V+ V
Sbjct: 4  LVLRNMVTPGEIDEDLKDEIEEECE---------------------------KYGKVLNV 36

Query: 65 IIHELP 70
          I+HE+ 
Sbjct: 37 IVHEVA 42

This subfamily corresponds to the RRM found in UHM domain of 45 kDa-splicing factor (SPF45 or RBM17), poly(U)-binding-splicing factor PUF60 (FIR or Hfp or RoBP1 or Siah-BP1), and similar proteins. SPF45 is an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RRMs and a C-terminal UHM domain. . Length = 85

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 35  NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN 74
           NMV P ++D  LE E+++EC  K+G V RVII+       
Sbjct: 521 NMVTPQDIDEFLEGEIREECG-KFGVVDRVIINFEKQGEE 559

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 9   NMVGPGEVDSDLEPEVKEEC 28
           NMV P ++D  LE E++EEC
Sbjct: 521 NMVTPQDIDEFLEGEIREEC 540

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
KOG1996|consensus	378		99.52
KOG0124|consensus	544		99.42
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.34
KOG0147|consensus	549		98.96
KOG0120|consensus	500		98.83
KOG1548|consensus	382		98.7
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	98.55
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	98.54
smart00361	70	RRM_1 RNA recognition motif.	97.18
PF15519	73	RBM39linker: linker between RRM2 and RRM3 domains	96.74
KOG0124|consensus	544		96.09
KOG1996|consensus	378		96.0
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	92.84
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	88.28
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	86.51
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	85.36
smart00360	71	RRM RNA recognition motif.	81.35

>KOG1996|consensus

Probab=99.52  E-value=2.3e-15  Score=116.11  Aligned_cols=58  Identities=45%  Similarity=0.662  Sum_probs=54.4

Q ss_pred             CCCCCccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCCCC
Q psy18100         16 VDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN   74 (76)
Q Consensus        16 vd~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~~~   74 (76)
                      ++++|+...+.|++||+|+|||+++++|+||++|+++|| +|||+|.+|.||..|++++
T Consensus       269 ~v~n~t~Il~~ptkvlllrnmVg~gevd~elede~keEc-eKyg~V~~viifeip~~p~  326 (378)
T KOG1996|consen  269 SVSNLTEILKCPTKVLLLRNMVGAGEVDEELEDETKEEC-EKYGKVGNVIIFEIPSQPE  326 (378)
T ss_pred             hhhhHHHHHhcchHHHHhhhhcCcccccHHHHHHHHHHH-HhhcceeeEEEEecCCCcc
Confidence            567788889999999999999999999999999999999 5999999999999999875

>KOG0124|consensus

Probab=99.42  E-value=1.6e-13  Score=108.78  Aligned_cols=49  Identities=41%  Similarity=0.638  Sum_probs=45.1

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTTAN   74 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~~~   74 (76)
                      +..|+|++|+|||+|.|+|++|++||+|||+ |||.|.||.|+...+.++
T Consensus       443 ~~~S~VivLRNMV~P~DiDe~LegEi~EECg-KfG~V~rViI~nekq~e~  491 (544)
T KOG0124|consen  443 KQESTVIVLRNMVDPKDIDEDLEGEITEECG-KFGAVNRVIIYNEKQGEE  491 (544)
T ss_pred             cccCcEEEEeccCChhhhhhHHHHHHHHHHh-cccceeEEEEEecccccc
Confidence            4679999999999999999999999999995 999999999999877653

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.34  E-value=8.1e-13  Score=107.80  Aligned_cols=46  Identities=39%  Similarity=0.549  Sum_probs=42.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      .+||||+|+|||+++|+++||++||++|| +|||.|.+|.||+.+..
T Consensus       512 ~~S~vVvL~NMv~~~eldedl~eDV~eEC-~K~G~V~~v~I~~~~~~  557 (612)
T TIGR01645       512 NRSNVIVLRNMVTPQDIDEFLEGEIREEC-GKFGVVDRVIINFEKQG  557 (612)
T ss_pred             CCCCEEEEeCCCChHHhHHHHHHHHHHHh-hcCceeEEEEEecCCCC
Confidence            47999999999999999999999999999 69999999999996543

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0147|consensus

Probab=98.96  E-value=3.2e-10  Score=91.94  Aligned_cols=50  Identities=22%  Similarity=0.408  Sum_probs=43.0

Q ss_pred             CccccccccceeeeeccCCCCc-----cccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         20 LEPEVKEECNTKYGENMVGPGE-----VDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        20 l~~ev~~~s~vl~L~NMv~~~e-----~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..|.+..||.|++|+|||+|.+     ||.||++||.||| +|||+|.||.+-.-.
T Consensus       435 ~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec-~k~g~v~hi~vd~ns  489 (549)
T KOG0147|consen  435 ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEEC-GKHGKVCHIFVDKNS  489 (549)
T ss_pred             cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHH-HhcCCeeEEEEccCC
Confidence            3566779999999999999976     5679999999999 599999999886543

>KOG0120|consensus

Probab=98.83  E-value=1.6e-09  Score=87.24  Aligned_cols=49  Identities=27%  Similarity=0.427  Sum_probs=43.0

Q ss_pred             cccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecC-CCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHEL-PTTA   73 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~-~~~~   73 (76)
                      .+.||+|++|+|||+|+|+.+     ||.++||.|| +|||.|..|.||++ ....
T Consensus       395 ~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec-~k~g~v~~v~ipr~~~~~~  449 (500)
T KOG0120|consen  395 AGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTEC-AKFGAVRSVEIPRPYPDEN  449 (500)
T ss_pred             CCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHh-cccCceeEEecCCCCCCCC
Confidence            468999999999999999864     5889999999 69999999999998 4443

>KOG1548|consensus

Probab=98.70  E-value=1.5e-08  Score=79.35  Aligned_cols=52  Identities=25%  Similarity=0.527  Sum_probs=42.9

Q ss_pred             ccccccccceeeeeccCCCCcccc------chHHHHHHHHhhcCcceEEEEEecCCCCC
Q psy18100         21 EPEVKEECNTKYGENMVGPGEVDS------DLEPEVKDECNTKYGEVVRVIIHELPTTA   73 (76)
Q Consensus        21 ~~ev~~~s~vl~L~NMv~~~e~dd------dl~~eV~eEC~~KyG~V~~v~I~~~~~~~   73 (76)
                      .++.....++|+|+|||+|.++++      ||++|+++|| +|||.|.+|+|+.-+...
T Consensus       258 ~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec-~K~G~v~~vvv~d~hPdG  315 (382)
T KOG1548|consen  258 DPSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEEC-EKFGQVRKVVVYDRHPDG  315 (382)
T ss_pred             ccccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHH-HHhCCcceEEEeccCCCc
Confidence            344445678999999999998865      5899999999 699999999999765544

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=98.55  E-value=1.4e-07  Score=71.48  Aligned_cols=46  Identities=28%  Similarity=0.476  Sum_probs=38.8

Q ss_pred             cccccceeeeeccCCCCcc-----ccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         24 VKEECNTKYGENMVGPGEV-----DSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~-----dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ...+++||+|.||+++.+.     ..+|.+||++|| +|||.|.+|.|....
T Consensus       358 ~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~-~k~G~v~~v~v~~~~  408 (457)
T TIGR01622       358 NNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEEC-SKYGGVVHIYVDTKN  408 (457)
T ss_pred             CCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHH-HhcCCeeEEEEeCCC
Confidence            3468899999999999764     347899999999 699999999998544

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=98.54  E-value=7.7e-08  Score=73.63  Aligned_cols=44  Identities=20%  Similarity=0.356  Sum_probs=38.7

Q ss_pred             ccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      +.+|+||+|.||++++++.+     ++.+||++|| +|||.|.+|.|++.
T Consensus       406 ~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f-~~~G~v~~v~i~~~  454 (509)
T TIGR01642       406 GKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEF-SKYGPLINIVIPRP  454 (509)
T ss_pred             CCCceEEEeccCCchhHhcCcchHHHHHHHHHHHH-HhcCCeeEEEeecc
Confidence            46899999999999988743     5889999999 69999999999975

Members of this subfamily are found in plants, metazoa and fungi.

>smart00361 RRM_1 RNA recognition motif

Probab=97.18  E-value=0.00051  Score=40.73  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.7

Q ss_pred             ccchHHHHHHHHhhcCcceEEEE
Q psy18100         43 DSDLEPEVKDECNTKYGEVVRVI   65 (76)
Q Consensus        43 dddl~~eV~eEC~~KyG~V~~v~   65 (76)
                      ++||++.+++|| ++||.|.++.
T Consensus         2 ~~~l~~~~~~~~-~~fG~v~~v~   23 (70)
T smart00361        2 DEDFEREFSEEE-EYFGEVGKIN   23 (70)
T ss_pred             chhHHHHHHHHH-HhcCCeeEEE
Confidence            468999999999 6999999995

>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A

Probab=96.74  E-value=0.0009  Score=41.68  Aligned_cols=18  Identities=22%  Similarity=0.165  Sum_probs=12.3

Q ss_pred             cccceeeeeccCCCCccc
Q psy18100         26 EECNTKYGENMVGPGEVD   43 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~d   43 (76)
                      .+|+|++|+|||+|.+-.
T Consensus        52 ~aS~C~lLkNMFDP~~Et   69 (73)
T PF15519_consen   52 IASRCFLLKNMFDPAEET   69 (73)
T ss_dssp             ---SEEEEESSS-TTCGG
T ss_pred             CCCceeeeecCCCccccc
Confidence            789999999999998643

>KOG0124|consensus

Probab=96.09  E-value=0.0024  Score=51.63  Aligned_cols=44  Identities=36%  Similarity=0.497  Sum_probs=31.2

Q ss_pred             eeeeeccccCCCCCCCCCccccccccc------eeeeeccCCCCccccch
Q psy18100          3 ATILDLNMVGPGEVDSDLEPEVKEECN------TKYGENMVGPGEVDSDL   46 (76)
Q Consensus         3 ~~~~~~NMv~p~evd~~l~~ev~~~s~------vl~L~NMv~~~e~dddl   46 (76)
                      ++|+|+|||+|.++|++|.+++...|-      -+++.|--.-++-|.+|
T Consensus       447 ~VivLRNMV~P~DiDe~LegEi~EECgKfG~V~rViI~nekq~e~edaei  496 (544)
T KOG0124|consen  447 TVIVLRNMVDPKDIDEDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEI  496 (544)
T ss_pred             cEEEEeccCChhhhhhHHHHHHHHHHhcccceeEEEEEecccccccchhh
Confidence            689999999999999999988754432      24455655555555443

>KOG1996|consensus

Probab=96.00  E-value=0.0016  Score=51.07  Aligned_cols=25  Identities=60%  Similarity=0.809  Sum_probs=21.7

Q ss_pred             eeeeeccccCCCCCCCCCccccccc
Q psy18100          3 ATILDLNMVGPGEVDSDLEPEVKEE   27 (76)
Q Consensus         3 ~~~~~~NMv~p~evd~~l~~ev~~~   27 (76)
                      ++++|+||||++++|++|.++++..
T Consensus       282 kvlllrnmVg~gevd~elede~keE  306 (378)
T KOG1996|consen  282 KVLLLRNMVGAGEVDEELEDETKEE  306 (378)
T ss_pred             HHHHhhhhcCcccccHHHHHHHHHH
Confidence            5789999999999999998887643

>PF13893 RRM_5: RNA recognition motif

Probab=92.84  E-value=0.16  Score=28.28  Aligned_cols=20  Identities=25%  Similarity=0.408  Sum_probs=16.0

Q ss_pred             HHHHHhhcCcceEEEEEecCC
Q psy18100         50 VKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        50 V~eEC~~KyG~V~~v~I~~~~   70 (76)
                      +++.| ++||.|.++.+.+..
T Consensus         1 L~~~f-~~fG~V~~i~~~~~~   20 (56)
T PF13893_consen    1 LYKLF-SKFGEVKKIKIFKKK   20 (56)
T ss_dssp             HHHHH-TTTS-EEEEEEETTS
T ss_pred             ChHHh-CCcccEEEEEEEeCC
Confidence            46789 799999999998765

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=88.28  E-value=2.9  Score=28.20  Aligned_cols=42  Identities=10%  Similarity=0.124  Sum_probs=31.6

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+..++-|.+.|+-..-     -++|+++-+ ++||.|.++.|+....
T Consensus        30 ~~~~~~~lfVgnL~~~~-----te~~L~~~F-~~~G~I~~v~i~~d~~   71 (144)
T PLN03134         30 LRLMSTKLFIGGLSWGT-----DDASLRDAF-AHFGDVVDAKVIVDRE   71 (144)
T ss_pred             ccCCCCEEEEeCCCCCC-----CHHHHHHHH-hcCCCeEEEEEEecCC
Confidence            34556678888875432     368999999 6999999999987643

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=86.51  E-value=1.2  Score=35.12  Aligned_cols=37  Identities=16%  Similarity=0.215  Sum_probs=29.4

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      |||+|.+.|+=.  ++   -++|+++-+ ++||.|.++.|...
T Consensus         1 ps~vv~V~nLp~--~~---te~~L~~~f-~~fG~V~~v~i~~~   37 (481)
T TIGR01649         1 PSPVVHVRNLPQ--DV---VEADLVEAL-IPFGPVSYVMMLPG   37 (481)
T ss_pred             CccEEEEcCCCC--CC---CHHHHHHHH-HhcCCeeEEEEECC
Confidence            689999999743  22   357789999 79999999998753

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=85.36  E-value=2.5  Score=30.81  Aligned_cols=38  Identities=16%  Similarity=0.025  Sum_probs=29.3

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ++++|.+.|+-  .++   -++++++-+ ++||.|.++.|+..+
T Consensus       268 ~~~~lfV~NL~--~~~---~e~~L~~~F-~~fG~v~~v~i~~d~  305 (352)
T TIGR01661       268 AGYCIFVYNLS--PDT---DETVLWQLF-GPFGAVQNVKIIRDL  305 (352)
T ss_pred             CCcEEEEeCCC--CCC---CHHHHHHHH-HhCCCeEEEEEeEcC
Confidence            34579999984  333   356788899 699999999998765

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>smart00360 RRM RNA recognition motif

Probab=81.35  E-value=2.8  Score=21.99  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+|+++-+ ++||.|.++.|+..+.
T Consensus        10 ~~~l~~~f-~~~g~v~~~~i~~~~~   33 (71)
T smart00360       10 EEELRELF-SKFGKIESVRLVRDKD   33 (71)
T ss_pred             HHHHHHHH-HhhCCEeEEEEEeCCC
Confidence            47888999 6999999999987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2pe8_A	105	Crystal Structure Of The Uhm Domain Of Human Spf45		2e-05
2dny_A	119	Solution Structure Of The Third Rna Binding Domain		5e-04
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		8e-04

>pdb|2PE8|A Chain A, Crystal Structure Of The Uhm Domain Of Human Spf45 (free Form) Length = 105

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 34 ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP 70
           NMVG GEVD DLE E K+EC  KYG+V + +I E+P
Sbjct: 14 RNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIP 49

>pdb|2DNY|A Chain A, Solution Structure Of The Third Rna Binding Domain Of Fbp- Interacting Repressor, Siahbp1 Length = 119

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
          K+E       NMV P ++D DLE EV +EC  K+G V RVII++
Sbjct: 12 KQESTVMVLRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 54

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 34  ENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
            NMV P ++D DLE EV +EC  K+G V RVII++
Sbjct: 130 RNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	1e-09
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	4e-07
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	3e-08
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	5e-07
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	2e-05
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	8e-05
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	3e-04

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} PDB: 3us5_A 2dny_A Length = 118

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 35 NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
          NMV P ++D DLE EV +EC  K+G V RVII++
Sbjct: 27 NMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQ 59

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} PDB: 3us5_A 2dny_A Length = 118

 Score = 42.8 bits (101), Expect = 4e-07
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 8  LNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVII 66
           NMV P ++D DLE EV EEC  K+       G V+  +  + K         +V++ +
Sbjct: 26 RNMVDPKDIDDDLEGEVTEECG-KF-------GAVNRVIIYQEKQGEEEDAEIIVKIFV 76

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 35  NMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE 68
           NMV P ++D DLE EV +EC  K+G V RVII++
Sbjct: 131 NMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQ 163

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Length = 114

 Score = 42.7 bits (101), Expect = 5e-07
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 6/46 (13%)

Query: 35 NMVGPGEV-----DSDLEPEVKDECNTKYGEVVRVIIHELPTTANV 75
          NM  P        D++++ +V +ECN K+G V+ + + +     NV
Sbjct: 14 NMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIHIYVDKNSAQGNV 58

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 112

 Score = 38.1 bits (89), Expect = 2e-05
 Identities = 9/72 (12%), Positives = 28/72 (38%), Gaps = 21/72 (29%)

Query: 4  TILDLNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR 63
           ++  NM  P + + D                      V +++  +++ EC+ K+G++ +
Sbjct: 17 VVIIKNMFHPMDFEDD--------------------PLVLNEIREDLRVECS-KFGQIRK 55

Query: 64 VIIHELPTTANV 75
          +++ +       
Sbjct: 56 LLLFDRHPDGVA 67

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Length = 105

 Score = 36.7 bits (85), Expect = 8e-05
 Identities = 19/27 (70%), Positives = 20/27 (74%), Gaps = 1/27 (3%)

Query: 8  LNMVGPGEVDSDLEPEVKEECNTKYGE 34
           NMVG GEVD DLE E KEEC  KYG+
Sbjct: 14 RNMVGAGEVDEDLEVETKEECE-KYGK 39

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Length = 105

 Score = 35.2 bits (81), Expect = 3e-04
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 22/63 (34%)

Query: 8  LNMVGPGEVDSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH 67
          +NMV P E+  D E E                     ++  +V+DEC+ KYG V  + I 
Sbjct: 11 MNMVLPEELLDDEEYE---------------------EIVEDVRDECS-KYGLVKSIEIP 48

Query: 68 ELP 70
             
Sbjct: 49 RPV 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.55
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.49
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.46
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.41
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	98.76
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	98.72
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	98.69
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	96.61
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	95.22
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	94.96
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	94.94
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	94.94
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	94.57
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	94.49
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	94.41
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	94.35
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	94.01
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	93.87
1x4e_A	85	RNA binding motif, single-stranded interacting pro	93.64
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	93.63
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	93.51
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	93.48
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	93.35
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	93.32
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	93.31
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	93.21
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	92.98
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	92.97
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	92.88
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	92.81
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	92.68
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	92.5
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	92.49
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	92.42
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	92.42
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	92.29
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	92.13
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	92.11
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	92.11
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	92.09
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	92.05
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	92.03
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	91.99
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	91.89
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	91.8
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	91.76
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	91.74
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	91.74
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	91.62
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	91.59
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	91.47
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	91.33
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	91.19
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	91.09
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	91.01
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	90.98
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	90.87
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	90.77
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	90.7
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	90.62
1x5p_A	97	Negative elongation factor E; structure genomics,	90.51
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	90.48
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	90.47
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	90.43
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	90.31
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	90.15
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	90.13
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	90.1
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	90.08
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	90.03
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	89.86
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	89.84
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	89.83
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	89.82
2div_A	99	TRNA selenocysteine associated protein; structural	89.77
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	89.77
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	89.55
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	89.51
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	89.5
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	89.41
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	89.4
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	89.38
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	89.3
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	89.1
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	89.08
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	89.04
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	88.99
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	88.88
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	88.67
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	88.57
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	88.57
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	88.57
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	88.53
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	88.51
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	88.48
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	88.44
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	88.44
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	88.4
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	88.37
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	88.24
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	88.09
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	88.02
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	87.87
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	87.75
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	87.43
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	87.41
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	87.26
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	87.24
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	87.08
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	87.04
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	86.99
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	86.96
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	86.9
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	86.73
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	86.48
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	86.43
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	86.24
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	86.04
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	85.88
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	85.76
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	85.6
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	85.3
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	85.23
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	85.09
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	85.08
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	84.69
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	84.04
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	83.8
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	83.39
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	83.31
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	83.23
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	82.81
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	82.58
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	82.53
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	82.5
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	82.36
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	82.32
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	82.31
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	82.08
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	81.86
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	81.67
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	81.56
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	81.42
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	80.88
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	80.7
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	80.66
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	80.41

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.55  E-value=3.6e-15  Score=97.08  Aligned_cols=46  Identities=46%  Similarity=0.685  Sum_probs=42.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++||+||+|+|||+|+|+++||++||++|| +|||.|.+|.|++...
T Consensus        17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef-~k~G~V~~v~I~~~~~   62 (118)
T 3ue2_A           17 KQESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQ   62 (118)
T ss_dssp             HHSCCEEEEESCSCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHHHHH-hccCCEeEEEEeecCC
Confidence            368999999999999999999999999999 6999999999998753

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.49  E-value=2.2e-14  Score=90.90  Aligned_cols=46  Identities=30%  Similarity=0.400  Sum_probs=41.3

Q ss_pred             ccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +.|||||+|+|||+|+++.+     ++++|+++|| +|||.|.+|.|++...
T Consensus         2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f-~k~G~V~~v~i~~~~~   52 (105)
T 3v4m_A            2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVD   52 (105)
T ss_dssp             CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHH-HTTSCEEEEECCCCBT
T ss_pred             CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHH-HccCCEEEEEEeccCC
Confidence            47899999999999999876     4889999999 6999999999998753

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.46  E-value=9.3e-14  Score=88.18  Aligned_cols=46  Identities=50%  Similarity=0.764  Sum_probs=40.2

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+.||+||+|+||++|+++++++++|++++| +|||.|.+|.|++.+
T Consensus         4 ~~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f-~~~G~V~~v~i~~~~   49 (105)
T 2pe8_A            4 GKCPTKVVLLRNMVGAGEVDEDLEVETKEEC-EKYGKVGKCVIFEIP   49 (105)
T ss_dssp             GGSCCSEEEEESSSCSCCC---CHHHHHHHG-GGGSCEEEEEEEECS
T ss_pred             CCCCCCEEEEEcCCChHHhhHHHHHHHHHHH-HhcCCEEEEEEecCC
Confidence            4689999999999999999999999999999 699999999999864

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.41  E-value=1.5e-13  Score=89.05  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=39.8

Q ss_pred             cccceeeeeccCCCCcc-----ccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEV-----DSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~-----dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .||+||+|+|||+++|+     .+||++||++|| +|||.|.+|.|++.+
T Consensus         5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f-~kfG~V~~v~i~~~~   53 (114)
T 3s6e_A            5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEEC-NKHGGVIHIYVDKNS   53 (114)
T ss_dssp             CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHH-TTTTCCSEEEECTTC
T ss_pred             CCCcEEEEECCCChHHccChhHHHHHHHHHHHHH-hccCCEEEEEEecCC
Confidence            68999999999999884     568999999999 699999999998865

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.76  E-value=6.2e-09  Score=65.03  Aligned_cols=45  Identities=16%  Similarity=0.448  Sum_probs=38.7

Q ss_pred             cccccceeeeeccCCCCcccc------chHHHHHHHHhhcCcceEEEEEecC
Q psy18100         24 VKEECNTKYGENMVGPGEVDS------DLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dd------dl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+.+|++|+|+||+++.++.+      ++++|+++.| ++||.|.+|.|++.
T Consensus        11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f-~~~G~v~~v~i~~~   61 (112)
T 2dit_A           11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLLFDR   61 (112)
T ss_dssp             CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEEETT
T ss_pred             CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHH-HccCCEeEEEEecC
Confidence            447899999999999988654      4889999999 69999999998653

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=98.72  E-value=1.1e-08  Score=69.72  Aligned_cols=46  Identities=43%  Similarity=0.632  Sum_probs=41.6

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++++.|.||++++++++++++|+++|| +|||.|.++.|++...
T Consensus       121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~-~~~G~v~~~~v~~~~~  166 (222)
T 3dxb_A          121 AMESTVMVLRNMVDPKDIDDDLEGEVTEEC-GKFGAVNRVIIYQEKQ  166 (222)
T ss_dssp             CCBCSEEEEESSCCGGGCCTTHHHHHHHHH-TTTSCEEEEEEEEEEC
T ss_pred             ccccccchhhcCCCHHHHHHHHHHHHHHHH-HccCCeEEEEEecCCC
Confidence            356789999999999999999999999999 6999999999986543

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=98.69  E-value=1.6e-08  Score=63.48  Aligned_cols=42  Identities=26%  Similarity=0.268  Sum_probs=33.2

Q ss_pred             cceeeeeccC-CCCccc-------------------cchHHHHHHHH-hhcCcceEEEEEecCC
Q psy18100         28 CNTKYGENMV-GPGEVD-------------------SDLEPEVKDEC-NTKYGEVVRVIIHELP   70 (76)
Q Consensus        28 s~vl~L~NMv-~~~e~d-------------------ddl~~eV~eEC-~~KyG~V~~v~I~~~~   70 (76)
                      |++|+|+||+ +|+...                   +++.+|++++| + |||.|.+|.|++..
T Consensus         1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~-~~G~V~~v~i~~~~   63 (104)
T 1jmt_A            1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEE-KYGEVEEMNVCDNL   63 (104)
T ss_dssp             CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEECCSS
T ss_pred             CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhc-cCCceEEEEEEeCC
Confidence            6889999999 464321                   35779999999 7 99999999999754

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=96.61  E-value=0.0045  Score=35.58  Aligned_cols=39  Identities=15%  Similarity=0.185  Sum_probs=30.3

Q ss_pred             cceeeeeccCCCCccccc---hHHHHHHHHhhcCcceEEEEEecC
Q psy18100         28 CNTKYGENMVGPGEVDSD---LEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        28 s~vl~L~NMv~~~e~ddd---l~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ++.|.+.|+  |...++.   .++++++.+ ++||.|.++.|++.
T Consensus         1 ~~~l~V~nL--p~~~~~~~~~t~~~l~~~F-~~~G~i~~v~i~~~   42 (81)
T 2krb_A            1 DSVIVVDNV--PQVGPDRLEKLKNVIHKIF-SKFGKITNDFYPEE   42 (81)
T ss_dssp             CCEEEEESC--CCCCTTTHHHHHHHHHHHH-HTTCCEEEEECCCB
T ss_pred             CCEEEEeCC--CCCcHHHHHHHHHHHHHHH-hhcCCeEEEEecCC
Confidence            367888888  4444432   679999999 69999999999853

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=95.22  E-value=0.073  Score=31.99  Aligned_cols=41  Identities=12%  Similarity=0.071  Sum_probs=32.5

Q ss_pred             cccceeeeeccCCCCccccc---hHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSD---LEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~ddd---l~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..++.|.+.|+-.  ..+++   .++++++-+ ++||.|.+|.|++.
T Consensus        13 ~~~~~l~V~nLp~--~~~~~~~~t~~~l~~~F-~~~G~v~~v~i~~~   56 (105)
T 2nlw_A           13 GIDSVIVVDNVPQ--VGPDRLEKLKNVIHKIF-SKFGKITNDFYPEE   56 (105)
T ss_dssp             SCCSEEEEESCCC--CCTTTTTHHHHHHHHHH-GGGSCEEEEECCCB
T ss_pred             CCCCEEEEeCCCc--chhhhhHHHHHHHHHHH-hcCCCEEEEEeeCC
Confidence            4467899999853  44443   789999999 69999999999853

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=94.96  E-value=0.043  Score=31.10  Aligned_cols=40  Identities=15%  Similarity=0.205  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-  .++.   ++++++-+ ++||.|.++.|+..+
T Consensus         4 ~~~~~~l~V~nl~--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~   43 (85)
T 3mdf_A            4 ATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDY   43 (85)
T ss_dssp             CCCSSEEEEECCC--TTCC---HHHHHHHH-GGGSCEEEEECCEET
T ss_pred             CCCCCEEEEECCC--CCCC---HHHHHHHH-hccCCEEEEEEEECC
Confidence            3567899999983  3333   47889999 699999999997653

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=94.94  E-value=0.068  Score=31.30  Aligned_cols=39  Identities=18%  Similarity=0.288  Sum_probs=30.2

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      |++.|.+.|+=  .++.   ++|+++-+ ++||.|.++.|.....
T Consensus         1 P~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   39 (96)
T 2x1f_A            1 PSRVVYLGSIP--YDQT---EEQILDLC-SNVGPVINLKMMFDPQ   39 (96)
T ss_dssp             CCSEEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEECCBCTT
T ss_pred             CCcEEEEECCC--CCCC---HHHHHHHH-HhcCCEEEEEEEeCCC
Confidence            57888888883  3333   57789999 6999999999987643

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.94  E-value=0.064  Score=33.09  Aligned_cols=40  Identities=13%  Similarity=0.232  Sum_probs=31.1

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..+|+++|.+.|+-  .++   -++|+++-| ++||.|.+|.|.+.
T Consensus        11 ~~~p~~~l~V~nLp--~~~---te~~L~~~F-~~fG~V~~v~i~~~   50 (104)
T 1wex_A           11 KVSVSPVVHVRGLC--ESV---VEADLVEAL-EKFGTICYVMMMPF   50 (104)
T ss_dssp             CCCCCSEEEEESCC--SSC---CHHHHHHHH-TTTSCEEEEEEETT
T ss_pred             cCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCEEEEEEECC
Confidence            34678999999963  333   356789999 69999999998753

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=94.57  E-value=0.074  Score=33.37  Aligned_cols=39  Identities=10%  Similarity=0.240  Sum_probs=31.1

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+++|.++|+-  .++   -++|+++-+ ++||.|.++.+.+.
T Consensus        18 ~~ps~~l~V~NLp--~~~---te~~L~~lF-~~fG~V~~v~i~~~   56 (100)
T 3r27_A           18 TPASPVVHIRGLI--DGV---VEADLVEAL-QEFGPISYVVVMPK   56 (100)
T ss_dssp             CCCCSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEETT
T ss_pred             CCCCcEEEEeCCC--CCC---CHHHHHHHH-hccCCEEEEEEEcC
Confidence            3689999999984  333   346789999 69999999999754

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=94.49  E-value=0.063  Score=31.21  Aligned_cols=40  Identities=13%  Similarity=0.431  Sum_probs=31.2

Q ss_pred             cccceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+++.|.+.|+  |.++ +++|++.+.+-+ ++||.|.++.|++
T Consensus         6 ~~~~~l~V~nL--p~~~~~~~l~~~l~~~f-~~~G~i~~v~i~~   46 (97)
T 1nu4_A            6 RPNHTIYINNL--NEKIKKDELKKSLHAIF-SRFGQILDILVSR   46 (97)
T ss_dssp             CCCSEEEEESC--CTTSCHHHHHHHHHHHH-GGGSCEEEEECCH
T ss_pred             CCCCEEEEeCC--CCCCCHHHHHHHHHHHH-HhCCCEEEEEEEc
Confidence            57889999996  3344 356777777999 6999999999873

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=94.41  E-value=0.07  Score=31.88  Aligned_cols=44  Identities=11%  Similarity=-0.059  Sum_probs=34.5

Q ss_pred             ccceeeeeccCCCCccc-cchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVD-SDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~d-ddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++|.+.|+=..++.. +-.++++++-+ ++||.|.+|.|+..+.
T Consensus         5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F-~~~G~i~~v~i~~d~~   49 (100)
T 3ns6_A            5 SDQYIVVNGAPVIPSAKVPVLKKALTSLF-SKAGKVVNMEFPIDEA   49 (100)
T ss_dssp             GGGEEEEESCCCCBGGGHHHHHHHHHHHH-HTTSCEEEEECCEETT
T ss_pred             cCcEEEEeCCCcCChHHHHHHHHHHHHHH-HhcCCEeEEEEEEcCC
Confidence            46789999986544443 45789999999 6999999999987654

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.35  E-value=0.2  Score=28.84  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=31.4

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-.  ++.   ++++++-+ ++||.|.++.|...+.
T Consensus        12 ~~~~~~l~v~nlp~--~~t---~~~l~~~f-~~~G~v~~v~i~~~~~   52 (95)
T 2cqc_A           12 PDPNCCLGVFGLSL--YTT---ERDLREVF-SKYGPIADVSIVYDQQ   52 (95)
T ss_dssp             CCGGGCEEEESCCS--SCC---HHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred             CCCCCEEEEECCCC--CCC---HHHHHHHH-HhcCCeeEEEEEEcCC
Confidence            36688999999832  233   45789999 6999999999987654

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.01  E-value=0.072  Score=32.74  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+++|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|.+.
T Consensus        12 ~~p~~~l~V~nLp~--~~---te~~L~~~F-~~fG~v~~v~i~~~   50 (101)
T 2cq1_A           12 GAPSRVLHIRKLPG--EV---TETEVIALG-LPFGKVTNILMLKG   50 (101)
T ss_dssp             SSCCSEEEEESCCT--TC---CHHHHHHTT-TTTSCEEEEEEETT
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEECC
Confidence            46789999999852  23   346788999 69999999998764

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.87  E-value=0.2  Score=28.81  Aligned_cols=42  Identities=24%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..++++.|.+.|+-  .++   -++|+++-+ ++||.|.++.|+..+.
T Consensus        12 ~~~~~~~l~V~nlp--~~~---t~~~l~~~f-~~~G~v~~v~i~~~~~   53 (94)
T 2e5h_A           12 LAPSKSTVYVSNLP--FSL---TNNDLYRIF-SKYGKVVKVTIMKDKD   53 (94)
T ss_dssp             CCCCTTSEEEESCC--TTS---CHHHHHHHT-TTTSCEEEEEECCCSS
T ss_pred             CCCCCCEEEEECCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence            34567889999984  223   356789999 6999999999987654

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.64  E-value=0.12  Score=29.39  Aligned_cols=40  Identities=15%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         3 ~~~~~l~v~nl--p~~~t---~~~l~~~f-~~~G~i~~~~i~~~~~   42 (85)
T 1x4e_A            3 SGSSGLYIRGL--QPGTT---DQDLVKLC-QPYGKIVSTKAILDKT   42 (85)
T ss_dssp             CCCCEEEEESC--CTTCC---HHHHHTTS-TTTSCEEEEEEECCSS
T ss_pred             CCCcEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            46788889997  33332   46788999 6999999999987643

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=93.63  E-value=0.2  Score=28.89  Aligned_cols=41  Identities=20%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-.  .+.   ++|+++-+ ++||.|.+|.|+..+.
T Consensus        13 ~~~~~~l~v~nlp~--~~~---~~~l~~~F-~~~G~i~~v~i~~~~~   53 (95)
T 2ywk_A           13 EEADRTVFVGNLEA--RVR---EEILYELF-LQAGPLTKVTICKDRE   53 (95)
T ss_dssp             TTGGGEEEEECCCT--TCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCCEEEEECCCC--CCC---HHHHHHHH-HhcCCEEEEEEEECCC
Confidence            35678999999832  232   46789999 6999999999987653

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=93.51  E-value=0.2  Score=30.02  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=30.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+  |..+.   ++|+++-+ ++||.|.++.|+...
T Consensus         6 ~~~~~l~V~nl--p~~~t---~~~l~~~F-~~~G~v~~v~i~~~~   44 (115)
T 3lqv_A            6 EVNRILYIRNL--PYKIT---AEEMYDIF-GKYGPIRQIRVGNTP   44 (115)
T ss_dssp             TCCSEEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEEEECST
T ss_pred             CCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEeeCC
Confidence            56789999997  33332   46789999 699999999998654

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.48  E-value=0.11  Score=30.47  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=32.1

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ...+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|+....
T Consensus         8 ~~~~~~~l~V~nLp--~~~t---~~~l~~~f-~~~G~i~~v~i~~~~~   49 (102)
T 2cqb_A            8 MATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDYE   49 (102)
T ss_dssp             SCCCCSCEEEESCC--SSCC---HHHHHHHH-TTTSCCCCEECCCCSS
T ss_pred             cCCCCCEEEEeCCC--CCCC---HHHHHHHh-hccCCEEEEEEEecCC
Confidence            34577899999983  3333   57889999 6999999999987543

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.35  E-value=0.18  Score=29.36  Aligned_cols=39  Identities=10%  Similarity=0.124  Sum_probs=30.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.++.|+...
T Consensus         6 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   44 (99)
T 1whw_A            6 SGSGRLFVRNLS--YTSS---EEDLEKLF-SAYGPLSELHYPIDS   44 (99)
T ss_dssp             CSCEEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCCCT
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEeEEEEEecC
Confidence            467889999983  2333   35799999 699999999998765

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=93.32  E-value=0.28  Score=30.11  Aligned_cols=40  Identities=33%  Similarity=0.331  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +|++.|.+.|+=  .++.   ++++++-+ ++||.|.+|.|+..+.
T Consensus         4 ~p~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~i~~v~i~~d~~   43 (110)
T 3s8s_A            4 IPLKEVTFARLN--DNVR---ETFLKDMC-RKYGEVEEVEILLHPR   43 (110)
T ss_dssp             SCCCEEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEEEECTT
T ss_pred             CCCcEEEEECCC--CCCC---HHHHHHHH-HhcCCeeEEEEEECCC
Confidence            567888999973  2232   46788899 6999999999987654

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=93.31  E-value=0.41  Score=28.10  Aligned_cols=39  Identities=10%  Similarity=0.106  Sum_probs=30.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+  |.++.   ++++++-+ ++||.|.+|.|+..+
T Consensus        13 ~~~~~l~v~nL--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   51 (105)
T 2dnh_A           13 GRDRKLFVGML--NKQQS---EEDVLRLF-QPFGVIDECTVLRGP   51 (105)
T ss_dssp             CCCCEEEEESC--CTTCC---HHHHHHHH-TTTSCEEEEEEEECS
T ss_pred             CCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence            56788999998  33333   46789999 699999999998764

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=93.21  E-value=0.14  Score=33.58  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=28.2

Q ss_pred             cccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         24 VKEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        24 v~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ...|++|+.  +.|+--+  +.+   +++++-+ ++||.|.+|.|+..
T Consensus        22 ~~~ps~VL~I~V~NL~~~--vte---~~L~~lF-s~yG~V~~V~i~~~   63 (130)
T 3zzy_A           22 MAGQSPVLRIIVENLFYP--VTL---DVLHQIF-SKFGTVLKIITFTK   63 (130)
T ss_dssp             ---CCSEEEEEEESCCSC--CCH---HHHHHHH-TTSSCEEEEEEEEE
T ss_pred             cCCCCceEEEEECCCCCC--CCH---HHHHHHH-hCcCCEEEEEEEcC
Confidence            347788877  8898533  333   3578889 69999999999863

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.98  E-value=0.36  Score=28.31  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+  |.++.   ++|+++-+ ++||.|.+|.|...+.
T Consensus        12 ~~~~~~l~V~nl--p~~~t---~~~l~~~f-~~~G~v~~v~i~~~~~   52 (103)
T 2cq3_A           12 KSTPKRLHVSNI--PFRFR---DPDLRQMF-GQFGKILDVEIIFNER   52 (103)
T ss_dssp             SCCCCEEEEESC--CTTCC---HHHHHHHG-GGTSCEEEEEEECCTT
T ss_pred             CCCCCEEEEeCC--CCCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            456788999998  33333   46789999 6999999999987643

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=92.97  E-value=0.35  Score=27.44  Aligned_cols=40  Identities=28%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++++++-+ ++||.|.++.|+..+.
T Consensus         9 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   48 (87)
T 3s7r_A            9 EDAGKMFVGGLS--WDT---SKKDLKDYF-TKFGEVVDCTIKMDPN   48 (87)
T ss_dssp             SCTTEEEEECCC--TTC---CHHHHHHHH-TTTSCEEEEEEEECTT
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCEEEEEEeecCC
Confidence            567888999983  333   357788999 6999999999987653

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=92.88  E-value=0.26  Score=29.68  Aligned_cols=39  Identities=10%  Similarity=0.153  Sum_probs=30.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+=  .++.   ++|+++-+ ++||.|.++.|....
T Consensus        38 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~~~i~~~~   76 (118)
T 2khc_A           38 PEGCNLFIYHLP--QEFT---DTDLASTF-LPFGNVISAKVFIDK   76 (118)
T ss_dssp             CCSEEEEEECSC--TTCC---HHHHHHHT-TTSCEEEEEEECCCS
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEeCC
Confidence            556789999983  3333   47789999 699999999998764

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.81  E-value=0.25  Score=31.73  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=28.6

Q ss_pred             ccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|++++.  +.|+--+  +.   ++++++-+ ++||.|.+|.|+.-
T Consensus        20 ~~ps~vl~l~V~NL~~~--vt---~~~L~~~F-s~yG~V~~v~i~~~   60 (124)
T 2e5i_A           20 SGGNKVLLLSIQNPLYP--IT---VDVLYTVC-NPVGKVQRIVIFKR   60 (124)
T ss_dssp             CCCCSEEEEEEESCCSC--CC---HHHHHHHH-TTTSCEEEEEEEES
T ss_pred             CCCCcEEEEEEcCcCCC--CC---HHHHHHHH-HhcCCEEEEEEEeC
Confidence            35788875  5787532  32   34789999 69999999999763

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=92.68  E-value=0.32  Score=30.83  Aligned_cols=39  Identities=13%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+  |.++.   ++++++-+ ++||.|.++.|+...
T Consensus       102 ~~~~~l~V~nL--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~  140 (196)
T 1l3k_A          102 LTVKKIFVGGI--KEDTE---EHHLRDYF-EQYGKIEVIEIMTDR  140 (196)
T ss_dssp             -CCSEEEEECC--TTTCC---HHHHHHHH-TTTSCEEEEEEEECT
T ss_pred             CCcceEEEeCC--CCCCC---HHHHHHHH-hcCCCeEEEEEeecC
Confidence            45678999997  33332   57899999 699999999998764

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.50  E-value=0.17  Score=32.39  Aligned_cols=39  Identities=15%  Similarity=0.087  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+++|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|.+.
T Consensus        28 ~~ps~~LfVgNLp~--~v---te~dL~~lF-~~fG~V~~v~i~~~   66 (119)
T 2ad9_A           28 GVPSRVIHIRKLPI--DV---TEGEVISLG-LPFGKVTNLLMLKG   66 (119)
T ss_dssp             SSCCSEEEEESCCT--TC---CHHHHHHHH-TTTSCCCEEEEEGG
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEeCC
Confidence            46789999999753  22   357789999 69999999999763

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=92.49  E-value=0.27  Score=30.44  Aligned_cols=40  Identities=13%  Similarity=0.169  Sum_probs=30.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++++++.+ ++||.|.++.++..+.
T Consensus        93 ~~~~~l~v~nl~--~~~---t~~~l~~~F-~~~G~i~~v~~~~~~~  132 (175)
T 3nmr_A           93 VEDRKLFIGMIS--KKC---TENDIRVMF-SSFGQIEECRILRGPD  132 (175)
T ss_dssp             GGGSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCeEEEcCCC--CcC---CHHHHHHHH-HhCCCEEEEEEEECCC
Confidence            356789999983  222   247899999 6999999999987643

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=92.42  E-value=0.5  Score=28.22  Aligned_cols=39  Identities=8%  Similarity=0.169  Sum_probs=30.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|+...
T Consensus        13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   51 (115)
T 2dgo_A           13 SNHFHVFVGDLS--PEIT---TEDIKAAF-APFGRISDARVVKDM   51 (115)
T ss_dssp             TTCEEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEECT
T ss_pred             CCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEEcC
Confidence            567889999983  2332   46789999 699999999998764

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=92.42  E-value=0.39  Score=30.91  Aligned_cols=39  Identities=13%  Similarity=0.304  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  ++   -++|+++.| ++||.|.++.|+...
T Consensus       123 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~  161 (216)
T 2qfj_A          123 RAFNRIYVASVHQ--DL---SDDDIKSVF-EAFGKIKSATLARDP  161 (216)
T ss_dssp             TTSCEEEEECCCT--TC---CHHHHHHHH-TTSSCEEEEEEEECT
T ss_pred             CCCcEEEEeCCCC--cC---CHHHHHHHH-hccCCeeEEEEEecC
Confidence            4567899999732  23   267899999 699999999998764

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=92.29  E-value=0.18  Score=32.16  Aligned_cols=40  Identities=15%  Similarity=0.246  Sum_probs=32.3

Q ss_pred             cccceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .|++.|.+.|+-  ..+ +++|++.+++-+ ++||.|.+|.+..
T Consensus        27 ~p~~~LfV~nL~--~~~~e~~L~~~L~~~F-~~~G~I~~v~i~~   67 (127)
T 2a3j_A           27 EPSQVVLITNIN--PEVPKEKLQALLYALA-SSQGDILDIVVDL   67 (127)
T ss_dssp             SCCSEEEEESCC--TTSCHHHHHHHHHHHH-HHHSCEEEEEECC
T ss_pred             CCCCEEEEeCCC--CCCCHHHHHHHHHHHh-ccCCCeEEEEecc
Confidence            567889999984  334 457888899999 6999999999875

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.13  E-value=0.61  Score=27.08  Aligned_cols=39  Identities=5%  Similarity=0.055  Sum_probs=29.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..+++.|.+.|+-.  ++.   ++|+++-+ ++||.|.++.+...
T Consensus        14 ~~~~~~l~V~nlp~--~~t---~~~l~~~F-~~~G~v~~v~~~~~   52 (97)
T 1why_A           14 ANPTTRLWVGGLGP--NTS---LAALAREF-DRFGSIRTIDHVKG   52 (97)
T ss_dssp             CCCCSCEEEECCCS--SCC---HHHHHHHH-HTTSCEEEEEECSS
T ss_pred             CCCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeeEEEEeCC
Confidence            46678899999843  232   47788999 69999999998753

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=92.11  E-value=0.26  Score=29.60  Aligned_cols=39  Identities=13%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|....
T Consensus        23 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   61 (115)
T 2cpz_A           23 PEGANLFIYHLP--QEFG---DQDLLQMF-MPFGNVVSAKVFIDK   61 (115)
T ss_dssp             STTCCEEEESCC--SSCC---HHHHHHHH-GGGSCCSEEEEEECS
T ss_pred             CCCcEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence            566889999984  3333   47889999 699999999998765

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.11  E-value=0.21  Score=31.69  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=31.1

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..|+++|.+.|+-... +   -++|+++-| ++||.|.+|.|.+.
T Consensus        22 ~~p~~~l~V~NLp~~~-~---te~~L~~lF-~~fG~V~~v~i~~~   61 (112)
T 1x4f_A           22 QELGRVIHLSNLPHSG-Y---SDSAVLKLA-EPYGKIKNYILMRM   61 (112)
T ss_dssp             SCCCCEEEEESCCCSS-C---CSHHHHTTT-TTTSCCSEEEEETT
T ss_pred             CCCCCEEEEeCCCCcc-C---CHHHHHHHH-HhcCCEEEEEEecC
Confidence            5678999999986420 2   346788999 69999999999764

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.09  E-value=0.53  Score=27.58  Aligned_cols=41  Identities=17%  Similarity=0.105  Sum_probs=31.6

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .++   -++++++-+ ++||.|.+|.|.....
T Consensus        12 ~~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   52 (103)
T 2cqi_A           12 DGQPRTLYVGNLS--RDV---TEVLILQLF-SQIGPCKSCKMITEHT   52 (103)
T ss_dssp             SCCCCEEEEESCC--TTC---CHHHHHHHH-HHHSCEEEEEEECCCC
T ss_pred             CCCCCEEEEeCCC--ccC---CHHHHHHHH-HhcCCEeEEEEEecCC
Confidence            3567899999983  233   346789999 6999999999988644

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=92.05  E-value=0.36  Score=31.99  Aligned_cols=40  Identities=10%  Similarity=0.145  Sum_probs=29.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .|++.|.+.|+  |.++.   ++++++-+ ++||.|.+|.|.+...
T Consensus        13 ~p~~tlfVgnL--p~~~t---e~~L~~~F-~~~G~I~~v~i~~d~~   52 (213)
T 4f02_A           13 YPMASLYVGDL--HPDVT---EAMLYEKF-SPAGPILSIRVCRDMI   52 (213)
T ss_dssp             --CCEEEEESC--CTTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCcEEEEeCC--CCCCC---HHHHHHHH-HhhCCEEEEEEecccC
Confidence            56788999997  33343   57788999 6999999999987543

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.03  E-value=0.31  Score=28.28  Aligned_cols=40  Identities=15%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|+....
T Consensus         3 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   42 (98)
T 2cpf_A            3 SGSSGLFIKNLN--FSTT---EETLKGVF-SKVGAIKSCTISKKKN   42 (98)
T ss_dssp             CCCCCEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEEEEEEEC
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            467888889883  2232   46789999 6999999999986543

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.99  E-value=0.55  Score=26.94  Aligned_cols=40  Identities=8%  Similarity=0.169  Sum_probs=30.9

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.++.|+..+.
T Consensus         3 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~~   42 (95)
T 2dnz_A            3 SGSSGLYVGSLHF--NI---TEDMLRGIF-EPFGKIDNIVLMKDSD   42 (95)
T ss_dssp             SCCCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEECCSS
T ss_pred             CCCcEEEEeCCCC--CC---CHHHHHHHH-HhcCCEeEEEEeecCC
Confidence            4678889999732  22   356789999 6999999999988654

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=91.89  E-value=0.39  Score=28.28  Aligned_cols=39  Identities=13%  Similarity=0.214  Sum_probs=30.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|....
T Consensus        27 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   65 (107)
T 3ulh_A           27 ETGGKLLVSNLD--FGVS---DADIQELF-AEFGTLKKAAVHYDR   65 (107)
T ss_dssp             CCSEEEEEESCC--TTCC---HHHHHHHH-HTTSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEECC
Confidence            567899999973  3333   46788999 699999999998765

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=91.80  E-value=0.25  Score=27.89  Aligned_cols=38  Identities=8%  Similarity=0.077  Sum_probs=28.1

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .++.|.+.|+  |.++   -++|+++-+ ++||.|.++.|+...
T Consensus         3 ~~~~l~V~nl--p~~~---t~~~l~~~F-~~~G~i~~~~i~~~~   40 (88)
T 4a8x_A            3 KPTKVHIGRL--TRNV---TKDHIMEIF-STYGKIKMIDMPVER   40 (88)
T ss_dssp             CCCEEEEECC--CTTC---CHHHHHHHH-HTTSCEEEEECCEET
T ss_pred             CCCEEEEeCC--CCCC---CHHHHHHHH-HhCCCEEEEEEEeCC
Confidence            3567888887  3333   346889999 699999999997654

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=91.76  E-value=0.24  Score=29.16  Aligned_cols=41  Identities=10%  Similarity=0.215  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|.....
T Consensus        10 ~~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   50 (106)
T 2dgp_A           10 DHDAIKLFIGQIP--RNLD---EKDLKPLF-EEFGKIYELTVLKDRF   50 (106)
T ss_dssp             CTTCEEEEEESCC--TTCC---HHHHHHHH-HHHSCCCEEECCCCSS
T ss_pred             CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEecCC
Confidence            3567888999983  3333   35789999 6999999999987643

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.74  E-value=0.64  Score=27.57  Aligned_cols=40  Identities=15%  Similarity=0.245  Sum_probs=30.4

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-  .++   -++|+++-+ ++||.|.++.|+...
T Consensus        19 ~~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~v~~~~i~~~~   58 (109)
T 1x4a_A           19 GNNDCRIYVGNLP--PDI---RTKDIEDVF-YKYGAIRDIDLKNRR   58 (109)
T ss_dssp             CCCSSEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence            3567889999983  333   346789999 699999999997643

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.74  E-value=0.54  Score=27.54  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=30.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++++++-+ ++||.|.+|.|+...
T Consensus        13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   51 (105)
T 1x5u_A           13 NQDATVYVGGLD--EKVS---EPLLWELF-LQAGPVVNTHMPKDR   51 (105)
T ss_dssp             CTTTEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCBCS
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEecC
Confidence            567889999983  3332   46789999 699999999998765

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=91.62  E-value=0.42  Score=29.21  Aligned_cols=41  Identities=15%  Similarity=0.199  Sum_probs=31.0

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .++.   ++++++-. ++||.|.++.|+..+.
T Consensus        60 ~~~~~~l~v~nlp--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~~  100 (140)
T 2ku7_A           60 ATTKRVLYVGGLA--EEVD---DKVLHAAF-IPFGDITDIQIPLDYE  100 (140)
T ss_dssp             CSSCCEEEEECCC--TTCC---HHHHHHHH-GGGSCEEEEECCCCTT
T ss_pred             CCCCcEEEEEeCC--CCCC---HHHHHHHH-HhcCCEEEEEEeecCC
Confidence            3567889999983  2332   37789999 6999999999987643

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.59  E-value=0.43  Score=27.40  Aligned_cols=36  Identities=22%  Similarity=0.297  Sum_probs=28.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH   67 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~   67 (76)
                      .+++.|.+.|+=  .++.   ++++++-+ ++||.|.++.|.
T Consensus         6 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~~~   41 (90)
T 2dnq_A            6 SGMVKLFIGNLP--REAT---EQEIRSLF-EQYGKVLECDII   41 (90)
T ss_dssp             SCCEEEEEESCC--SSCC---HHHHHHHH-HTSSCEEEEEEE
T ss_pred             CCCeEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEE
Confidence            567888889983  3333   46789999 699999999987

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=91.47  E-value=0.54  Score=28.70  Aligned_cols=39  Identities=3%  Similarity=-0.002  Sum_probs=30.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++   -++++++.+ ++||.|.++.|...+
T Consensus        85 ~~~~~l~v~nl~--~~~---t~~~l~~~f-~~~G~i~~~~i~~~~  123 (166)
T 3md3_A           85 DDTFNLFVGDLN--VNV---DDETLRNAF-KDFPSYLSGHVMWDM  123 (166)
T ss_dssp             TTCEEEEEESCC--TTC---CHHHHHHHH-TTSTTEEEEEEEECT
T ss_pred             CCCceEEECCCC--CCC---CHHHHHHHH-hccCCeeEEEEEecC
Confidence            557789999873  233   247899999 699999999998764

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=91.33  E-value=0.2  Score=34.12  Aligned_cols=39  Identities=18%  Similarity=0.211  Sum_probs=28.1

Q ss_pred             ccccceee--eeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKY--GENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~--L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      +.|++++.  +.|+-  ..+.   ++++++-| ++||.|.+|.|+..
T Consensus        41 ~~ps~vl~l~VgNL~--~~vt---ed~L~~~F-s~fG~V~~V~i~~k   81 (164)
T 1sjr_A           41 AGQSPVLRIIVENLF--YPVT---LDVLHQIF-SKFGTVLKIITFTK   81 (164)
T ss_dssp             CCCCCEEEEEECSCC--SCCC---HHHHHHHH-HHHSCEEEEEEEES
T ss_pred             CCCCceEEEEEeCcC--CCCC---HHHHHHHH-HhcCCEEEEEEEeC
Confidence            35677754  67884  2333   35678899 69999999999753

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.19  E-value=0.82  Score=26.60  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcC--cceEEEEEec
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKY--GEVVRVIIHE   68 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~Ky--G~V~~v~I~~   68 (76)
                      ...+++.|.+.|+-.  ++.   ++++++-+ ++|  |.|.++.+++
T Consensus        11 ~~~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~g~g~v~~~~~~~   51 (99)
T 2cpd_A           11 TMSSVKILYVRNLML--STS---EEMIEKEF-NNIKPGAVERVKKIR   51 (99)
T ss_dssp             CSSCCCEEEEESCCT--TCC---HHHHHHHH-HTTSTTCEEEEEECS
T ss_pred             ccCCcCEEEEeCCCC--CCC---HHHHHHHH-HhcCCcceEEEEEeC
Confidence            345688999999842  232   46788999 699  9999998864

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=91.09  E-value=0.79  Score=26.67  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=31.6

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE--------EEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR--------VIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~--------v~I~~~~~   71 (76)
                      ...+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+        +.|+....
T Consensus         9 ~~~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~~   58 (99)
T 2la6_A            9 SHSDNNTIFVQGLG--ENVT---IESVADYF-KQIGIIKTNKKTGQPMINLYTDRE   58 (99)
T ss_dssp             SCCCCSEEEEECCC--SSCC---HHHHHHHH-TTTSCBCEETTTTEESEEEEECTT
T ss_pred             CCCCCCEEEEeCCC--CCCC---HHHHHHHH-HHhCCEeeccccccccEEEEecCC
Confidence            34667899999983  3332   57889999 69999999        88887643

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.01  E-value=0.25  Score=28.31  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=29.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+..
T Consensus         3 ~~~~~l~V~nL--p~~~t---e~~l~~~F-~~~G~i~~v~i~~~   40 (88)
T 1wf0_A            3 SGSSGVFVGRC--TGDMT---EDELREFF-SQYGDVMDVFIPKP   40 (88)
T ss_dssp             SCCCEEEEESC--CSSSC---HHHHHHHS-TTTSCCCEEECCSS
T ss_pred             CCCcEEEEeCC--CCCCC---HHHHHHHH-HHcCCeeEEEEecC
Confidence            45678888888  33343   46788999 69999999999754

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.98  E-value=0.44  Score=27.47  Aligned_cols=38  Identities=16%  Similarity=0.233  Sum_probs=29.2

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      ..+++.|.+.|+  |.++   -++|+++-+ ++||.|.++.|.+
T Consensus         7 ~~~~~~l~V~nL--p~~~---t~~~l~~~F-~~~G~v~~v~~~~   44 (92)
T 2dgt_A            7 GKASTKLHVGNI--SPTC---TNQELRAKF-EEYGPVIECDIVK   44 (92)
T ss_dssp             CCSSEEEEEESC--CSSC---CHHHHHHHH-HTTSCCCEEEECS
T ss_pred             CCCCCEEEEeCC--CCCC---CHHHHHHHH-HhcCCeEEEEEEC
Confidence            356788999998  3333   346788999 6999999999874

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=90.87  E-value=0.55  Score=31.86  Aligned_cols=39  Identities=10%  Similarity=-0.026  Sum_probs=30.8

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..++++|.+.|+-  .++   -++++++.| ++||.|.++.|+..
T Consensus       204 ~~~~~~l~v~nl~--~~~---~~~~l~~~F-~~~G~i~~v~~~~~  242 (282)
T 3pgw_A          204 NPPNHILFLTNLP--EET---NELMLSMLF-NQFPGFKEVRLVPG  242 (282)
T ss_pred             CCCCCEEEEeCCC--CcC---CHHHHHHHH-HhcCCeEEEEEecC
Confidence            3567899999984  223   357899999 69999999999854

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=90.77  E-value=0.93  Score=28.68  Aligned_cols=39  Identities=10%  Similarity=0.156  Sum_probs=31.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++++++.| ++||.|.++.++..+
T Consensus       112 ~~~~~l~v~nl~~--~~---~~~~l~~~f-~~~G~v~~~~~~~~~  150 (198)
T 2yh0_A          112 DSAHKLFIGGLPN--YL---NDDQVKELL-TSFGPLKAFNLVKDS  150 (198)
T ss_dssp             CCCCEEEEECCCT--TC---CHHHHHHHH-HTBSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCC--CC---CHHHHHHHH-HHcCCccEEEEeecC
Confidence            5678899999853  22   257899999 699999999998764

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=90.70  E-value=0.27  Score=31.61  Aligned_cols=38  Identities=18%  Similarity=0.041  Sum_probs=29.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~   68 (76)
                      .+|+++|.+.|+-.  ++   -++++++.+ ++|| .|.++.|..
T Consensus       117 ~~~~~~l~v~nl~~--~~---~~~~l~~~f-~~~G~~v~~v~i~~  155 (198)
T 1qm9_A          117 FPPSATLHLSNIPP--SV---SEEDLKVLF-SSNGGVVKGFKFFQ  155 (198)
T ss_dssp             CCCCCEEEECCCCT--TC---CHHHHHHHH-HHTTSCCCEEEESS
T ss_pred             CCCccEEEEeCCCC--CC---CHHHHHHHH-HHcCCCceEEEEEe
Confidence            35688999999843  33   257899999 6999 999999954

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.62  E-value=1.3  Score=25.65  Aligned_cols=40  Identities=13%  Similarity=0.115  Sum_probs=30.8

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-.  ++   -++|+++-+ ++||.|.++.|+...
T Consensus        14 ~~~~~~l~v~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~   53 (100)
T 2do4_A           14 SLEKHKLFISGLPF--SC---TKEELEEIC-KAHGTVKDLRLVTNR   53 (100)
T ss_dssp             CCCCSCEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEEECT
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeEEEEEEECC
Confidence            35678899999843  23   246789999 699999999998765

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.51  E-value=1.1  Score=26.08  Aligned_cols=36  Identities=11%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+    +   --++|+++-+ ++||.|.+|.|...
T Consensus        13 ~~~~~l~V~n~----~---~t~~~l~~~F-~~~G~i~~v~i~~~   48 (97)
T 1x5p_A           13 RKGNTLYVYGE----D---MTPTLLRGAF-SPFGNIIDLSMDPP   48 (97)
T ss_dssp             CCCSEEEEECS----S---CCHHHHHHHH-TTTSCEEEEEEETT
T ss_pred             CCCCEEEEcCC----C---CCHHHHHHHH-hhCCCEEEEEecCC
Confidence            46678888993    2   2357899999 69999999999643

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=90.48  E-value=0.44  Score=28.89  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=28.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH   67 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~   67 (76)
                      .+++.|.+.|+  |.++.   ++|+++-+ ++||.|.++.|.
T Consensus        29 ~~~~~l~V~nL--p~~~t---~~~L~~~F-~~~G~i~~v~i~   64 (108)
T 2jvo_A           29 LSNTRLFVRPF--PLDVQ---ESELNEIF-GPFGPMKEVKIL   64 (108)
T ss_dssp             CSCSEEEECSS--CTTCC---HHHHHHHH-TTTSCCCEEEEE
T ss_pred             CCCCEEEEECC--CCCCC---HHHHHHHH-HhcCCEEEEEEE
Confidence            56788999998  33333   46789999 699999999986

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.47  E-value=0.71  Score=26.99  Aligned_cols=38  Identities=11%  Similarity=0.255  Sum_probs=29.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+-.  ++.   ++|+++-+ ++||.|.+|.|...
T Consensus        13 ~~~~~l~V~nlp~--~~t---~~~l~~~F-~~~G~i~~v~i~~~   50 (103)
T 2d9p_A           13 YQVVNLYVKNLDD--GID---DERLRKAF-SPFGTITSAKVMME   50 (103)
T ss_dssp             SSCCCEEEECCCT--TCC---HHHHHHTT-TTTSCEEEEEEEEC
T ss_pred             CCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCEEEEEEEcC
Confidence            4678899999832  232   47789999 69999999999875

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.43  E-value=0.51  Score=29.13  Aligned_cols=40  Identities=13%  Similarity=0.089  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..|+++|.+.|+-. +++   -++|+++-+ ++||.|.+|.|.+.
T Consensus        12 ~~p~~~l~V~nLp~-~~~---te~dL~~lF-~~fG~V~~v~i~~~   51 (102)
T 1x4d_A           12 VETRRVVHIMDFQR-GKN---LRYQLLQLV-EPFGVISNHLILNK   51 (102)
T ss_dssp             CCCCCEEEEESCCC-SSS---HHHHHHTTT-GGGSCEEEEEECSS
T ss_pred             CCCCCEEEEeCCCC-CcC---CHHHHHHHH-HhcCCEEEEEEEcC
Confidence            35789999999753 122   356788999 69999999999764

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=90.31  E-value=0.89  Score=28.66  Aligned_cols=40  Identities=18%  Similarity=0.189  Sum_probs=31.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++|+++-+ ++||.|.+|.|+....
T Consensus        37 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   76 (156)
T 1h2v_Z           37 KKSCTLYVGNLS--FYT---TEEQIYELF-SKSGDIKKIIMGLDKM   76 (156)
T ss_dssp             TTCCEEEEESCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEecCC
Confidence            467899999984  222   257789999 6999999999987654

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=90.15  E-value=0.9  Score=28.11  Aligned_cols=39  Identities=10%  Similarity=0.120  Sum_probs=30.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++|+++-| ++||.|.++.|+..+
T Consensus        92 ~~~~~l~v~nlp~--~~---t~~~l~~~f-~~~G~v~~v~i~~~~  130 (172)
T 2g4b_A           92 PGAHKLFIGGLPN--YL---NDDQVKELL-TSFGPLKAFNLVKDS  130 (172)
T ss_dssp             TTTTCEEEECCCT--TC---CHHHHHHHH-HTTSCEEEEEEEECT
T ss_pred             CCCCEEEEEcCCC--cC---CHHHHHHHH-HhcCCceEEEEEecC
Confidence            3467888898844  22   257899999 699999999998874

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=90.13  E-value=1  Score=27.64  Aligned_cols=39  Identities=18%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++++++.+ ++||.|.++.|+...
T Consensus        87 ~~~~~l~v~nl~~--~~---t~~~l~~~f-~~~G~i~~~~i~~~~  125 (168)
T 1b7f_A           87 IKDTNLYVTNLPR--TI---TDDQLDTIF-GKYGSIVQKNILRDK  125 (168)
T ss_dssp             TTTCEEEEESCCT--TC---CHHHHHHHH-TSSSCEEEEEEEECT
T ss_pred             CCCCCEEEeCCCC--CC---CHHHHHHhh-hcCCcEEEEEEEEcC
Confidence            4567889999853  22   247899999 699999999998765

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=90.10  E-value=0.55  Score=31.42  Aligned_cols=45  Identities=18%  Similarity=0.006  Sum_probs=33.3

Q ss_pred             ccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         21 EPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        21 ~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ++..+++++.|.+.|+=. .++.   ++++++-+ ++||.|.+|.|....
T Consensus        27 p~~~~~~~~~l~V~nLp~-~~~t---e~~L~~~F-~~~G~i~~v~i~~~~   71 (229)
T 2adc_A           27 PGLAGAGNSVLLVSNLNP-ERVT---PQSLFILF-GVYGDVQRVKILFNK   71 (229)
T ss_dssp             GGGGCCCCSEEEEESCCT-TTCC---HHHHHHHH-HHHTCEEEEEECCTT
T ss_pred             CCCCCCCCCEEEEeCCCc-ccCC---HHHHHHHH-HhCCCeEEEEEEECC
Confidence            344457789999999842 1333   37888999 699999999998754

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=90.08  E-value=0.43  Score=32.58  Aligned_cols=41  Identities=17%  Similarity=0.222  Sum_probs=31.6

Q ss_pred             ccccceeeeeccCCCCc-cccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGE-VDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e-~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .+ +.   ++++++.| ++||.|.+|.|+..+.
T Consensus       207 ~~~~~~l~v~nlp--~~~~t---~~~l~~~F-~~~G~v~~v~i~~~~~  248 (292)
T 2ghp_A          207 TLEGREIMIRNLS--TELLD---ENLLRESF-EGFGSIEKINIPAGQK  248 (292)
T ss_dssp             CCTTTEEEEEEEC--TTTCC---HHHHHHHH-GGGSCEEEEECCSCCC
T ss_pred             CCCCceEEEECCC--cccCC---HHHHHHHH-hccCCeeEEEEEecCC
Confidence            3567899999973  22 32   47899999 6999999999988653

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=90.03  E-value=0.78  Score=28.25  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +++.|.+.|+-  .++.   ++++++-+ ++||.|.++.|...+.
T Consensus         2 ~~~~l~v~nLp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   40 (167)
T 2cjk_A            2 ESCKMFIGGLN--WDTT---EDNLREYF-GKYGTVTDLKIMKDPA   40 (167)
T ss_dssp             GGGEEEECSCC--TTCC---HHHHHHHH-TTTCCEEEEECCCCTT
T ss_pred             CCcEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEEECCC
Confidence            56788888873  3332   56789999 6999999999987643

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.86  E-value=0.44  Score=28.94  Aligned_cols=38  Identities=18%  Similarity=0.379  Sum_probs=29.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..++.|.+.|+-  .++   -++|+++-+ ++||.|.+|.|+..
T Consensus         8 ~~~~~l~V~nLp--~~~---te~~L~~~F-~~~G~i~~v~i~~~   45 (111)
T 1whx_A            8 RSKTVILAKNLP--AGT---LAAEIQETF-SRFGSLGRVLLPEG   45 (111)
T ss_dssp             EEEEEEEEESCC--TTC---CHHHHHHHH-HTTSCEEEEECCSS
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEEEEEEeCC
Confidence            456789999984  222   467899999 69999999998753

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=89.84  E-value=0.59  Score=28.42  Aligned_cols=40  Identities=10%  Similarity=0.142  Sum_probs=30.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|....
T Consensus        32 ~~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~v~~v~i~~~~   71 (124)
T 2kt5_A           32 VETGAKLLVSNLD--FGVS---DADIQELF-AEFGTLKKAAVDYDR   71 (124)
T ss_dssp             CSSCEEEEEESCC--SSCC---HHHHHHHH-HTTSCCSEEEEECCS
T ss_pred             CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEECC
Confidence            3566789999983  3333   46789999 699999999998764

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=89.83  E-value=0.5  Score=31.79  Aligned_cols=40  Identities=13%  Similarity=0.122  Sum_probs=29.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      |.++++|.+.|+= |..+.+   +++++-+ ++||.|.+|.|...
T Consensus         1 g~~~~~l~V~nL~-~~~~~~---~~L~~~F-~~~G~v~~v~i~~~   40 (205)
T 3tyt_A            1 GADSPVLMVYGLD-QSKMNC---DRVFNVF-CLYGNVEKVKFMKS   40 (205)
T ss_dssp             -CCCSEEEEECCC-TTTCCH---HHHHHHH-TTTSCEEEEEECTT
T ss_pred             CCCCCEEEEeCCC-cccCCH---HHHHHHH-HhcCCeEEEEEecC
Confidence            4578899999974 233433   4788899 69999999999763

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=89.82  E-value=0.44  Score=28.52  Aligned_cols=37  Identities=14%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .-|.+.|+  |.++.   ++|+++-+ ++||.|.++.|++...
T Consensus        20 t~lfV~nL--p~~~t---e~~L~~~F-~~~G~I~~v~i~~d~~   56 (99)
T 4fxv_A           20 TNLIVNYL--PQNMT---QDELRSLF-SSIGEVESAKLIRDKV   56 (99)
T ss_dssp             SEEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred             CEEEEeCC--CCCCC---HHHHHHHH-HhcCCEEEeEeeecCC
Confidence            44888888  44444   46889999 6999999999987654

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.77  E-value=0.62  Score=26.99  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE-EEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV-RVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~-~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|. ++.|+...
T Consensus         7 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~v~i~~~~   46 (99)
T 2div_A            7 GMAASLWMGDLE--PYMD---ENFISRAF-ATMGETVMSVKIIRNR   46 (99)
T ss_dssp             SSSSEEEECSCC--TTCC---HHHHHHHH-HHTTCCCCEEEEEECS
T ss_pred             CCccEEEEeCCC--CCCC---HHHHHHHH-HHhCCcceEEEEeecC
Confidence            567889999983  2333   47789999 6999999 99998764

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=89.77  E-value=0.96  Score=28.57  Aligned_cols=41  Identities=10%  Similarity=0.260  Sum_probs=31.5

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+=  .++.   ++|+++-+ ++||.|.+|.|...+.
T Consensus        10 ~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~   50 (196)
T 1l3k_A           10 PEQLRKLFIGGLS--FETT---DESLRSHF-EQWGTLTDCVVMRDPN   50 (196)
T ss_dssp             CGGGGEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhCCCEEEEEEEEcCC
Confidence            3567889999983  3343   46788999 6999999999987654

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=89.55  E-value=0.46  Score=29.30  Aligned_cols=40  Identities=18%  Similarity=0.166  Sum_probs=30.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|.....
T Consensus        40 ~~~~~l~V~nLp--~~~~---~~~l~~~F-~~~G~i~~v~i~~~~~   79 (139)
T 1u6f_A           40 DVLRNLMVNYIP--TTVD---EVQLRQLF-ERYGPIESVKIVCDRE   79 (139)
T ss_dssp             TTTSEEEEESCS--TTCC---HHHHHHHH-HHHSCEEEEEEEEETT
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCeEEEEEEEcCC
Confidence            456789999983  3333   46789999 6999999999986543

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=89.51  E-value=0.55  Score=26.20  Aligned_cols=37  Identities=5%  Similarity=0.043  Sum_probs=26.1

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .-|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         2 ~~l~V~nl--p~~~t---~~~l~~~f-~~~G~i~~~~i~~~~~   38 (83)
T 3md1_A            2 FNLFVGDL--NVNVD---DETLRNAF-KDFPSYLSGHVMWDMQ   38 (83)
T ss_dssp             EEEEEECC--CTTCC---HHHHHHHH-TTSTTEEEEEEEECTT
T ss_pred             eEEEEeCC--CCCCC---HHHHHHHH-HhcCCeeEEEEEEcCC
Confidence            34556665  22232   47889999 6999999999987643

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=89.50  E-value=0.69  Score=30.93  Aligned_cols=38  Identities=18%  Similarity=0.064  Sum_probs=29.5

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~   68 (76)
                      ..+++.|.+.|+-.  ++.   ++++++.+ ++|| .|.++.|..
T Consensus       148 ~~~~~~l~V~nlp~--~~t---~~~l~~~f-~~~G~~i~~v~i~~  186 (229)
T 2adc_A          148 FPPSATLHLSNIPP--SVS---EEDLKVLF-SSNGGVVKGFKFFQ  186 (229)
T ss_dssp             CCSCSEEEEECCCT--TCC---HHHHHHHH-HTTSCCEEEEEECS
T ss_pred             CCCCCEEEEeCCCc--cCC---HHHHHHHH-HHcCCCeeEEEEEE
Confidence            35678999999832  332   57899999 6999 999999943

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.41  E-value=1.3  Score=24.82  Aligned_cols=38  Identities=13%  Similarity=0.336  Sum_probs=29.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+-..  +   -++++++-+ ++||.|.++.|.+.
T Consensus        10 ~~~~~l~V~~l~~~--~---t~~~l~~~f-~~~G~i~~~~~~~~   47 (85)
T 2ytc_A           10 KTITTLYVGGLGDT--I---TETDLRNHF-YQFGEIRTITVVQR   47 (85)
T ss_dssp             SSCCCEEEECCTTT--S---CHHHHHHHH-HTTSCEEEEEEEGG
T ss_pred             CCccEEEEcCCCCC--C---CHHHHHHHH-HhCCCEeEEEEECC
Confidence            56788888988532  2   347789999 69999999999863

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.40  E-value=0.71  Score=26.97  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=29.9

Q ss_pred             cceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+.|.+.|+-  .++ +++|++.+++-+ ++||.|.+|.|+....
T Consensus         9 ~~~l~V~nL~--~~~~~~~l~~~l~~~F-~~~G~v~~v~i~~~~~   50 (96)
T 2dgx_A            9 GADVQVSNID--YRLSRKELQQLLQEAF-ARHGKVKSVELSPHTD   50 (96)
T ss_dssp             CEEEEEESCC--TTSCHHHHHHHHHHHH-HHHSCEEEEEECSCCS
T ss_pred             CCEEEEECCC--CCCCHHHHHHHHHHhc-cccCcEEEEEEEeCCC
Confidence            4567788873  333 345666777999 6999999999986543

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.38  E-value=0.93  Score=26.87  Aligned_cols=40  Identities=25%  Similarity=0.091  Sum_probs=31.0

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|+...
T Consensus        12 ~~~~~~l~V~nlp~--~~---~~~~l~~~f-~~~G~i~~~~i~~~~   51 (114)
T 2do0_A           12 GRLGSTVFVANLDY--KV---GWKKLKEVF-SMAGVVVRADILEDK   51 (114)
T ss_dssp             CCCCSCEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEEEEECT
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence            35678899999842  23   347789999 699999999998764

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=89.30  E-value=0.66  Score=28.54  Aligned_cols=38  Identities=8%  Similarity=-0.020  Sum_probs=29.1

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      +++.|.+.|+=  .++.   ++|+++-+ ++||.|.++.+....
T Consensus         2 ~~~~l~v~nlp--~~~~---~~~l~~~f-~~~G~i~~v~i~~~~   39 (168)
T 1b7f_A            2 SNTNLIVNYLP--QDMT---DRELYALF-RAIGPINTCRIMRDY   39 (168)
T ss_dssp             CCSEEEEECCC--TTCC---HHHHHHHH-HTTSCEEEEECCEET
T ss_pred             CccEEEEeCCC--CCCC---HHHHHHHH-HhcCCeeEEEEEEeC
Confidence            56788888873  3333   46789999 699999999998754

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=89.10  E-value=0.31  Score=28.56  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .++..|.+.|+=.  ++   -++++++-+ ++||.|.++.|+..
T Consensus         9 ~~~~~l~V~~Lp~--~~---te~~L~~~F-~~~G~i~~v~i~~~   46 (89)
T 3d2w_A            9 HHGSKVFVGRCTE--DM---TAEELQQFF-CQYGEVVDVFIPKP   46 (89)
T ss_dssp             --CCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEECCSS
T ss_pred             CCCCEEEEeCCCC--CC---CHHHHHHHH-hccCCEEEEEEeeC
Confidence            4556777777532  22   246789999 69999999999863

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=89.08  E-value=0.52  Score=27.77  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=28.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|++
T Consensus         9 ~~~~~l~V~nl~~--~~---t~~~l~~~F-~~~G~i~~v~~~~   45 (103)
T 2dgu_A            9 AKVKVLFVRNLAN--TV---TEEILEKAF-SQFGKLERVKKLK   45 (103)
T ss_dssp             CCCCCEEEECCCT--TC---CHHHHHHHH-HHHSCEEEEEECS
T ss_pred             CCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEC
Confidence            4578899999842  23   247788999 6999999999874

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=89.04  E-value=1  Score=25.59  Aligned_cols=38  Identities=16%  Similarity=0.092  Sum_probs=29.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.++.|...
T Consensus         6 ~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~v~~~~i~~~   43 (92)
T 2dgv_A            6 SGACQIFVRNLPF--DF---TWKMLKDKF-NECGHVLYADIKME   43 (92)
T ss_dssp             SSCCEEEECSCCT--TC---CHHHHHHHH-HTTSCEEEEEEEES
T ss_pred             CCCcEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEcc
Confidence            5678888999842  22   357889999 69999999999874

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=88.99  E-value=1.6  Score=26.57  Aligned_cols=39  Identities=13%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++++++.+ ++||.|.++.|+...
T Consensus        86 ~~~~~l~v~nl~~--~~---t~~~l~~~f-~~~G~i~~~~i~~~~  124 (167)
T 1fxl_A           86 IRDANLYVSGLPK--TM---TQKELEQLF-SQYGRIITSRILVDQ  124 (167)
T ss_dssp             GTTCEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred             CCCCcEEECCCCC--cC---CHHHHHHHH-HhcCCEeEEEEEecC
Confidence            4557788888743  22   257899999 699999999998764

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.88  E-value=1  Score=26.14  Aligned_cols=38  Identities=24%  Similarity=0.382  Sum_probs=29.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.++.|.+.
T Consensus        13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~~~~~   50 (99)
T 2cpj_A           13 TQRSRLFVGNLP--PDIT---EEEMRKLF-EKYGKAGEVFIHKD   50 (99)
T ss_dssp             CCTTEEEEESCC--TTCC---HHHHHHHT-STTCCCSEEEEETT
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-hhcCCeEEEEEecC
Confidence            567889999983  3333   46789999 69999999999864

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=88.67  E-value=0.64  Score=26.14  Aligned_cols=39  Identities=5%  Similarity=0.097  Sum_probs=28.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.++.|+...
T Consensus         4 ~~~~~l~v~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~   42 (87)
T 3bs9_A            4 GSHFHVFVGDLSP--EI---TTAAIAAAF-APFGRISDARVVKDM   42 (87)
T ss_dssp             --CEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred             CCceEEEEeCCCC--CC---CHHHHHHHH-HhcCCEeEEEEEecC
Confidence            3567788888732  22   357789999 699999999998764

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=88.57  E-value=1.7  Score=25.58  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=31.3

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ...+++.|.+.|+-.  ++   -++++++-+ ++||.|.++.|+...
T Consensus        22 ~~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~   62 (110)
T 1oo0_B           22 RSVEGWILFVTSIHE--EA---QEDEIQEKF-CDYGEIKNIHLNLDR   62 (110)
T ss_dssp             CBTTBEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEECCBCT
T ss_pred             CCCCCCEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEecC
Confidence            346678899999843  22   246789999 699999999998654

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=88.57  E-value=0.68  Score=31.41  Aligned_cols=40  Identities=13%  Similarity=0.388  Sum_probs=32.2

Q ss_pred             cccceeeeeccCCCCccc-cchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEVD-SDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~d-ddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+++.|.+.|+-  .++. ++|+..+.+-+ ++||.|.+|.|.+
T Consensus         7 ~~~~~l~V~nlp--~~~~~~~l~~~L~~~F-~~~G~i~~v~~~~   47 (282)
T 3pgw_A            7 RPNHTIYINNLN--EKIKKDELKKSLYAIF-SQFGQILDILVSR   47 (282)
T ss_pred             CCCCEEEEeCCC--CCCCHHHHHHHHHHHH-hccCCeEEEEEcC
Confidence            568999999983  4443 56777788999 6999999999987

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.57  E-value=0.56  Score=28.45  Aligned_cols=39  Identities=10%  Similarity=0.172  Sum_probs=29.1

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +++.|.+.|+-.  ++   -++++++-+ ++||.|.+|.|++...
T Consensus        10 ~~~~lfV~~Lp~--~~---te~~L~~~F-~~~G~v~~v~i~~d~~   48 (103)
T 1s79_A           10 KNRSVYIKGFPT--DA---TLDDIKEWL-EDKGQVLNIQMRRTLH   48 (103)
T ss_dssp             GGGCEEEECCCT--TC---CHHHHHHHH-HTSSCEEEEEEECCCT
T ss_pred             CCCEEEEECCCC--CC---CHHHHHHHH-hhcCCEEEEEEEECCC
Confidence            457788888732  22   357789999 6999999999998654

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=88.53  E-value=1.3  Score=26.77  Aligned_cols=41  Identities=17%  Similarity=0.230  Sum_probs=31.4

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ...+++.|.+.|+-  .++   -++++++-+ ++||.|.+|.|+...
T Consensus        18 ~~~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~   58 (126)
T 3ex7_B           18 RSVEGWILFVTGVH--EEA---TEEDIHDKF-AEYGEIKNIHLNLDR   58 (126)
T ss_dssp             CCSSSEEEEEESCC--TTC---CHHHHHHHH-HTTSCEEEEECCBCT
T ss_pred             CCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEecC
Confidence            34567899999984  223   356788999 699999999998764

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.51  E-value=1.3  Score=25.79  Aligned_cols=40  Identities=23%  Similarity=0.214  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|+....
T Consensus        11 ~~~~~l~V~nLp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~~   50 (103)
T 2dnm_A           11 DGMITLKVDNLTY--RT---SPDSLRRVF-EKYGRVGDVYIPREPH   50 (103)
T ss_dssp             SCCCEEEEESCCT--TC---CHHHHHHHH-TTTSCEEEEECCBCSS
T ss_pred             CCCeEEEEeCCCC--CC---CHHHHHHHH-HhcCCEEEEEEEeCCC
Confidence            5578899999842  22   346789999 6999999999987643

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.48  E-value=0.57  Score=28.16  Aligned_cols=41  Identities=15%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      -..+++.|.+.|+=  .++.   ++|+++-+ ++||.|.++.|....
T Consensus        25 ~~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~   65 (109)
T 2err_A           25 NKSQPKRLHVSNIP--FRFR---DPDLRQMF-GQFGKILDVEIIFNE   65 (109)
T ss_dssp             CTTCCCEEEEESCC--TTCC---HHHHHHHG-GGTCCCSCEEECCBT
T ss_pred             CCCCCCEEEEECCC--CcCC---HHHHHHHH-HhcCCEEEEEEEECC
Confidence            34567889999983  2332   46789999 699999999998654

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=88.44  E-value=1.1  Score=28.19  Aligned_cols=45  Identities=20%  Similarity=0.141  Sum_probs=32.8

Q ss_pred             CccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         20 LEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        20 l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      -++.-..+++.|.+.|+-  .++   -++|+++-+ ++||.|.+|.|+...
T Consensus        39 ~~~~~~~~~~~l~V~nLp--~~~---te~~L~~~F-~~~G~i~~v~i~~~~   83 (135)
T 2lea_A           39 RPPPDVEGMTSLKVDNLT--YRT---SPDTLRRVF-EKYGRVGDVYIPRDR   83 (135)
T ss_dssp             CSCSSGGGCCCEEEECCC--SSC---HHHHHHHHH-GGGSCCSEEECCCCS
T ss_pred             CCCCCCCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEEEEEEEecC
Confidence            333344567889999983  233   357789999 699999999998754

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=88.44  E-value=0.22  Score=29.34  Aligned_cols=38  Identities=13%  Similarity=0.194  Sum_probs=28.7

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCc-ceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYG-EVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG-~V~~v~I~~~~~   71 (76)
                      |++|.++|+  |.++.   ++|+++-+ ++|| .|.+|.|.+...
T Consensus         1 S~~i~v~nL--p~~~t---e~~l~~~F-~~~G~~v~~v~i~~d~~   39 (91)
T 2lxi_A            1 SNIVMLRML--PQAAT---EDDIRGQL-QSHGVQAREVRLMRNKS   39 (91)
T ss_dssp             CCEEEEETC--CSSCC---HHHHHHHH-HHHTCCCSBCCSSSCSS
T ss_pred             CCEEEEeCC--CCCCC---HHHHHHHH-HHhCCEeEEEEEEecCC
Confidence            678888887  33333   46889999 6999 899999877543

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.40  E-value=0.65  Score=26.66  Aligned_cols=39  Identities=21%  Similarity=0.310  Sum_probs=29.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEE-EEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRV-IIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v-~I~~~~   70 (76)
                      .+++.|.+.|+-.  ++.   ++|+++-+ ++||.|.++ .|+..+
T Consensus         3 ~~~~~l~V~nLp~--~~t---~~~l~~~F-~~~G~i~~~~~i~~~~   42 (96)
T 1x5t_A            3 SGSSGIFIGNLDP--EID---EKLLYDTF-SAFGVILQTPKIMRDP   42 (96)
T ss_dssp             SCCCEEEEECCCT--TCC---HHHHHHHH-HTTSCBSSCCEECCCT
T ss_pred             CCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeeEEEEEEEcC
Confidence            4678888888732  232   57889999 699999999 887753

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=88.37  E-value=1.7  Score=25.36  Aligned_cols=42  Identities=17%  Similarity=0.223  Sum_probs=31.6

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ...+++.|.+.|+-.  ++   -++++++-+ ++||.|.+|.|.....
T Consensus        19 ~~~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~~   60 (106)
T 1p27_B           19 RSVEGWILFVTGVHE--EA---TEEDIHDKF-AEYGEIKNIHLNLDRR   60 (106)
T ss_dssp             CBTTBEEEEEECCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCCCEEEEeCCCC--CC---CHHHHHHHH-hccCCeEEEEEEecCC
Confidence            345678899999743  22   246789999 6999999999987643

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.24  E-value=1  Score=26.36  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++|| |.+|.|+....
T Consensus        13 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G-i~~v~i~~~~~   51 (104)
T 1wi8_A           13 SPPYTAFLGNLP--YDVT---EESIKEFF-RGLN-ISAVRLPREPS   51 (104)
T ss_dssp             SSCEEEEEESCC--SSCC---HHHHHHHT-TTSC-EEEEECCBCSS
T ss_pred             CCCCEEEEeCCC--CcCC---HHHHHHHH-HHCC-ceEEEEecCCC
Confidence            567889999983  3332   46789999 6999 99999987754

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=88.09  E-value=0.36  Score=26.60  Aligned_cols=24  Identities=17%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.|+..+.
T Consensus        14 ~~~l~~~F-~~~G~v~~v~i~~~~~   37 (77)
T 1uaw_A           14 QEGLREYF-GQFGEVKECLVMRDPL   37 (77)
T ss_dssp             SHHHHHHH-TTTSCCCCEEEECCCC
T ss_pred             HHHHHHHH-HhcCCEEEEEEecCCC
Confidence            46789999 6999999999988653

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.02  E-value=1.4  Score=25.68  Aligned_cols=40  Identities=13%  Similarity=0.261  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-.  ++   -++++++-+ ++||.|.+|.|+...
T Consensus        12 ~~~~~~l~V~nlp~--~~---t~~~l~~~f-~~~G~i~~v~i~~~~   51 (103)
T 2cq0_A           12 ADDNATIRVTNLSE--DT---RETDLQELF-RPFGSISRIYLAKDK   51 (103)
T ss_dssp             CSSSEEEEEESCCT--TC---CHHHHHTTS-TTTCCEEEEEEEECS
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeEEEEEeecC
Confidence            45678899999842  22   346789999 699999999998764

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.87  E-value=0.49  Score=30.15  Aligned_cols=37  Identities=14%  Similarity=0.050  Sum_probs=27.6

Q ss_pred             cccceeeeec--cCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGEN--MVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~N--Mv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .||+.|.++|  +-  .++   -++++++.. ++||.|.+|.|+.
T Consensus        23 ~pt~~L~V~Ng~L~--~~~---te~~L~~~F-~~fG~v~~v~i~~   61 (114)
T 2cq2_A           23 YATQSLVVANGGLG--NGV---SRNQLLPVL-EKCGLVDALLMPP   61 (114)
T ss_dssp             SCCSEEEEETCTGG--GTC---CHHHHHHHH-HHHSCEEEEECCT
T ss_pred             CCCCEEEEECCCCC--CCC---CHHHHHHHH-HhcCCeEEEEEeC
Confidence            5788899966  42  122   237889999 6999999999874

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.75  E-value=1.3  Score=27.84  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=24.0

Q ss_pred             cccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         42 VDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        42 ~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ++++|..++.+.. +.||.|..+.|...
T Consensus        24 fd~~l~~~L~~~F-~~~G~Vi~vr~~~d   50 (91)
T 2dnr_A           24 FDDALIDELLQQF-ASFGEVILIRFVED   50 (91)
T ss_dssp             CCHHHHHHHHHHH-HTTCCEEEEEECSS
T ss_pred             CCHHHHHHHHHHH-HhCCCeEEEEEecC
Confidence            6889999999999 69999999998753

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=87.43  E-value=0.88  Score=26.45  Aligned_cols=41  Identities=12%  Similarity=0.225  Sum_probs=31.2

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .++   -++|+++-+ ++||.|.++.|+..+.
T Consensus         9 ~~~~~~l~v~nLp--~~~---t~~~l~~~f-~~~G~i~~v~i~~~~~   49 (102)
T 1x5s_A            9 ASDEGKLFVGGLS--FDT---NEQSLEQVF-SKYGQISEVVVVKDRE   49 (102)
T ss_dssp             CCCCSEEEEESCC--TTC---CHHHHHHHH-HHHSCCCEEEECCCSS
T ss_pred             CCCCCEEEEECCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence            3567889999983  223   346789999 6999999999987643

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=87.41  E-value=0.85  Score=25.71  Aligned_cols=38  Identities=21%  Similarity=0.167  Sum_probs=28.9

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .++.|.+.|+  |.++   -++++++-+ ++||.|.++.|+..+
T Consensus         5 ~~~~l~V~nl--p~~~---t~~~l~~~F-~~~G~i~~v~i~~~~   42 (89)
T 3ucg_A            5 DARSIYVGNV--DYGA---TAEELEAHF-HGCGSVNRVTILCDK   42 (89)
T ss_dssp             HHTEEEEESC--CTTC---CHHHHHHHH-GGGCCEEEEEEEESC
T ss_pred             cCCEEEEeCC--CCCC---CHHHHHHHH-HhCCCEEEEEEEecC
Confidence            4577888887  3333   247789999 699999999998764

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=87.26  E-value=1.3  Score=27.61  Aligned_cols=41  Identities=15%  Similarity=0.063  Sum_probs=31.0

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-.  ++.   ++|+++-+ ++||.|.+|.|.....
T Consensus        43 ~~~~~~l~V~nLp~--~~t---e~~L~~~F-~~~G~I~~v~i~~d~~   83 (129)
T 2kxn_B           43 PDPNCCLGVFGLSL--YTT---ERDLREVF-SKYGPIADVSIVYDQQ   83 (129)
T ss_dssp             CCCSSCBCEETCTT--SCC---HHHHHHHH-TTTSCEEEEEEECCSS
T ss_pred             CCCCCEEEEeCCCC--CCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            36678899999732  232   45789999 6999999999987643

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=87.24  E-value=1.1  Score=27.70  Aligned_cols=43  Identities=12%  Similarity=0.078  Sum_probs=31.3

Q ss_pred             cccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEE--EEEecCC
Q psy18100         22 PEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVR--VIIHELP   70 (76)
Q Consensus        22 ~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~--v~I~~~~   70 (76)
                      +.-..+++.|.+.|+=  .++.   ++++++-+ ++||.|..  |.|....
T Consensus        17 ~~~~~~~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~v~~~~v~i~~d~   61 (131)
T 2m2b_A           17 PSSENANDTIILRNLN--PHST---MDSILGAL-APYAVLSSSNVRVIKDK   61 (131)
T ss_dssp             CCCSCCCCEEEECSCC--TTCC---SHHHHHHH-GGGCCCCTTTEECCBCS
T ss_pred             CCCCCCCCEEEEeCCC--CCCC---HHHHHHHH-HHhCCcceeeEEEEEcC
Confidence            3344677889999973  2332   47788999 69999976  8888765

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.08  E-value=1.9  Score=26.35  Aligned_cols=42  Identities=12%  Similarity=0.079  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCcc-c-cchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEV-D-SDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~-d-ddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      ..++.|.|.--+..++. . +--++++++-+ ++||.|.+|.|+.
T Consensus         8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F-~~~G~V~~v~i~~   51 (100)
T 2d9o_A            8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLL-QKYGEVLNLVLSS   51 (100)
T ss_dssp             CSSCEEEEECCCCSSCSCCCSCCHHHHHHHH-HTTSCEEEEEEES
T ss_pred             CccceEEEeeeccCccCcCCCCCHHHHHHHH-HhcCCEEEEEEcc
Confidence            44667777776655422 1 22578899999 6999999999974

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=87.04  E-value=0.68  Score=31.12  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcce--EEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEV--VRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V--~~v~I~~~~   70 (76)
                      +|++.|.+.|+  |.++.   ++++++-+ ++||.|  .++.++...
T Consensus       121 ~p~~~l~v~NL--p~~~t---~~~L~~~F-~~~G~v~~~~v~~~~~~  161 (205)
T 3tyt_A          121 HPSNVLHFFNA--PLEVT---EENFFEIC-DELGVKRPTSVKVFSGK  161 (205)
T ss_dssp             CCCSEEEEEEE--CTTCC---HHHHHHHH-HHHTCCCCSEEEECSCC
T ss_pred             CCcceEEEeCC--CCCCC---HHHHHHHH-HhcCCcceEEEEEEcCC
Confidence            57889999998  33443   46789999 699999  899988754

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.99  E-value=0.48  Score=27.66  Aligned_cols=39  Identities=21%  Similarity=0.167  Sum_probs=29.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++|+++-+ ++||.|.++.|....
T Consensus         6 ~~~~~l~V~nlp~--~~---~~~~l~~~f-~~~G~i~~~~i~~~~   44 (104)
T 1p1t_A            6 RSLRSVFVGNIPY--EA---TEEQLKDIF-SEVGPVVSFRLVYDR   44 (104)
T ss_dssp             HHHSCEEEESCCT--TS---CHHHHHHHH-HTTSCCSEEEEEEET
T ss_pred             CCccEEEEeCCCC--cC---CHHHHHHHH-HhcCCeeEEEEEeCC
Confidence            5578888998742  22   347789999 699999999998654

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=86.96  E-value=0.8  Score=26.94  Aligned_cols=41  Identities=20%  Similarity=0.155  Sum_probs=27.2

Q ss_pred             ccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         23 EVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        23 ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ....+++.|.+.|+-  .++.   ++|+++-+ ++|| |.+|.|....
T Consensus        14 ~~~~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G-i~~v~i~~~~   54 (100)
T 2j76_E           14 LPKSPPYTAFLGNLP--YDVT---EESIKEFF-RGLN-ISAVRLPREP   54 (100)
T ss_dssp             ------CEEEESCCS--SCCS---SSHHHHHS-CSSC-EEEEECSCCT
T ss_pred             CCCCCCcEEEEeCCC--CCCC---HHHHHHHH-HhcC-CeEEEEEecC
Confidence            344667889999983  3333   35688999 6999 9999998765

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.90  E-value=3.4  Score=24.55  Aligned_cols=41  Identities=2%  Similarity=0.117  Sum_probs=31.2

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-.  ++   -++|+++-+ ++||.|.+|.|.....
T Consensus        14 ~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   54 (116)
T 2cqd_A           14 DTTFTKIFVGGLPY--HT---TDASLRKYF-EGFGDIEEAVVITDRQ   54 (116)
T ss_dssp             SCSSSEEEEECCCS--SC---CHHHHHHHH-HTTSCEEEEEESCCSS
T ss_pred             CCCCCEEEEeCCCC--CC---CHHHHHHHH-HhCCCeeEEEEEEcCC
Confidence            35678899999832  23   246789999 6999999999987643

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.73  E-value=2.8  Score=24.50  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-.  ++   -++++++-+ ++||.|.+|.|+....
T Consensus        12 ~~~~~~l~V~nLp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   52 (111)
T 1x4h_A           12 VTEGKTVFIRNLSF--DS---EEEALGEVL-QQFGDLKYVRVVLHPD   52 (111)
T ss_dssp             CCCCCCEEEESCCT--TC---CHHHHHHHH-HTTSCEEEEECCBCSS
T ss_pred             CCCCCEEEEECCCC--CC---CHHHHHHHH-HhcCCeEEEEEEecCC
Confidence            35678899999743  22   356789999 6999999999987643

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=86.48  E-value=2.2  Score=24.80  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=30.3

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..+++.|.+.|+-.  ++   -++++++-+ ++||.|.+|.|+..
T Consensus        12 ~~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~i~~v~i~~~   50 (107)
T 2cph_A           12 KQTTSKILVRNIPF--QA---NQREIRELF-STFGELKTVRLPKK   50 (107)
T ss_dssp             SSCCCCEEEESCCT--TC---CHHHHHHHH-HTTSCEEEEECCCC
T ss_pred             CCCCCEEEEeCCCC--cC---CHHHHHHHH-HccCCeEEEEEecC
Confidence            35678899999832  23   246789999 69999999999876

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=86.43  E-value=0.87  Score=28.51  Aligned_cols=40  Identities=15%  Similarity=0.087  Sum_probs=30.7

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+.+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|.+.
T Consensus        12 ~~~~~~~LfV~nLp--~~vt---e~dL~~lF-~~fG~V~~v~i~~~   51 (105)
T 1sjq_A           12 SGVPSRVIHIRKLP--IDVT---EGEVISLG-LPFGKVTNLLMLKG   51 (105)
T ss_dssp             CCCCCCEEEECSCC--TTSC---HHHHHHHH-HHHCCEEEEEEETT
T ss_pred             CCCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEcC
Confidence            45678899999973  3333   45678999 69999999999864

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=86.24  E-value=1.8  Score=27.00  Aligned_cols=39  Identities=15%  Similarity=0.112  Sum_probs=29.8

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..+++.|.+.|+-  .++.   ++++++-+ ++||.|.++.|+..
T Consensus        70 ~~~~~~l~V~nl~--~~~t---~~~l~~~F-~~~G~i~~v~i~~~  108 (150)
T 2i2y_A           70 CPLDCKVYVGNLG--NNGN---KTELERAF-GYYGPLRSVWVARN  108 (150)
T ss_dssp             STTSCEEEEESCC--SCCS---CHHHHHHH-HHHSCEEEEEECSS
T ss_pred             CCCCCEEEEeCCC--CCCC---HHHHHHHH-HhhCCEEEEEEeeC
Confidence            4567889999983  3332   35788999 69999999999875

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=86.04  E-value=0.45  Score=26.21  Aligned_cols=24  Identities=21%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.|+..+.
T Consensus        13 ~~~l~~~F-~~~G~i~~v~i~~~~~   36 (75)
T 2mss_A           13 VEDVKHYF-EQFGKVDDAMLMFDKT   36 (75)
T ss_dssp             HHHHHHHH-HTTSCCSEECCCBCSS
T ss_pred             HHHHHHHH-HhcCCEEEEEEEecCC
Confidence            57789999 6999999999987653

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.88  E-value=1.2  Score=25.86  Aligned_cols=40  Identities=18%  Similarity=0.241  Sum_probs=30.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++|+++-+ ++||.|.+|.|+..+.
T Consensus         8 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~~   47 (99)
T 2dgs_A            8 SKSNKIFVGGIP--HNC---GETELREYF-KKFGVVTEVVMIYDAE   47 (99)
T ss_dssp             SSCCEEEEESCC--SSC---CHHHHHHHH-SSSSCEEEEEECCCTT
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEeCCC
Confidence            567889999973  233   346788999 6999999999987643

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=85.76  E-value=2.7  Score=25.50  Aligned_cols=38  Identities=8%  Similarity=0.027  Sum_probs=28.5

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      +++.|.+.|+-.  ++.   ++|+++-+ ++||.|.++.+....
T Consensus         1 s~~~l~v~nlp~--~~~---~~~l~~~f-~~~G~i~~v~~~~~~   38 (167)
T 1fxl_A            1 SKTNLIVNYLPQ--NMT---QEEFRSLF-GSIGEIESCKLVRDK   38 (167)
T ss_dssp             CCSEEEEESCCT--TCC---HHHHHHHH-HTTSCEEEEEEEECT
T ss_pred             CcceEEEcCCCC--CCC---HHHHHHHH-HhcCCeEEEEEEeCC
Confidence            356777888732  232   56788999 699999999998765

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=85.60  E-value=1.2  Score=26.83  Aligned_cols=42  Identities=10%  Similarity=0.198  Sum_probs=28.7

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+.+++.|.+.|+=  .++.   ++|+++-+ ++||.|.+|.|.....
T Consensus        21 ~~~~~~~lfV~nLp--~~~t---e~~L~~~F-~~~G~i~~v~i~~~~~   62 (109)
T 2rs2_A           21 MGSSGCKMFIGGLS--WQTT---QEGLREYF-GQFGEVKECLVMRDPL   62 (109)
T ss_dssp             -----CCEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEECCCTT
T ss_pred             cCCCCCEEEEeCCC--CCCC---HHHHHHHH-HccCCeEEEEEEECCC
Confidence            34567888899873  3332   46789999 6999999999987653

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=85.30  E-value=0.74  Score=27.92  Aligned_cols=36  Identities=11%  Similarity=0.253  Sum_probs=27.2

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .-|.+.|+  |.++.   ++|+++-+ ++||.|.+|.|....
T Consensus         6 ~~lfV~nL--p~~~t---e~~L~~~F-~~~G~v~~v~i~~d~   41 (115)
T 4f25_A            6 GNIFIKNL--DKSID---NKALYDTF-SAFGNILSCKVVCDE   41 (115)
T ss_dssp             CEEEEESC--CTTCC---HHHHHHHH-GGGSCEEEEEEEEET
T ss_pred             CEEEECCC--CCCCC---HHHHHHHH-hccCCEEEEEEeecC
Confidence            44788887  33444   46889999 699999999998754

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=85.23  E-value=0.2  Score=31.69  Aligned_cols=34  Identities=29%  Similarity=0.348  Sum_probs=23.6

Q ss_pred             eeeeeccccCCCCCCCCCcccc-------ccccceeeeecc
Q psy18100          3 ATILDLNMVGPGEVDSDLEPEV-------KEECNTKYGENM   36 (76)
Q Consensus         3 ~~~~~~NMv~p~evd~~l~~ev-------~~~s~vl~L~NM   36 (76)
                      ++++|+||+.|.+.++++...+       |.=.+|.+.++-
T Consensus        21 ~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~   61 (118)
T 3ue2_A           21 TVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEK   61 (118)
T ss_dssp             CEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecC
Confidence            6899999999998887765544       333445555554

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.09  E-value=1.3  Score=25.95  Aligned_cols=40  Identities=20%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++|+++-+ ++||.|.+|.|+....
T Consensus        14 ~~~~~l~V~nlp--~~~---t~~~l~~~F-~~~G~v~~v~i~~~~~   53 (105)
T 2dh8_A           14 DEIGKLFVGGLD--WST---TQETLRSYF-SQYGEVVDCVIMKDKT   53 (105)
T ss_dssp             SSSSEECCBSCC--TTC---CHHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEeeCCC
Confidence            566788888873  222   346788999 6999999999988643

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=85.08  E-value=1  Score=30.54  Aligned_cols=40  Identities=0%  Similarity=-0.227  Sum_probs=30.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  ++  --++++++-+ ++||.|.++.|+..+
T Consensus       182 ~~~~~l~v~nlp~--~~--~~~~~l~~~f-~~~G~i~~v~i~~~~  221 (284)
T 3smz_A          182 LHSRCLCVDRLPP--GF--NDVDALCRAL-SAVHSPTFCQLACGQ  221 (284)
T ss_dssp             TSCSEEEEECCCT--TC--CCHHHHHHHT-CSSSCCSEEEEEECS
T ss_pred             CCccEEEEecCCc--cc--CCHHHHHHHh-hCCCCeEEEEEEECC
Confidence            4567899999732  21  0257899999 699999999998764

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.69  E-value=1.3  Score=25.79  Aligned_cols=41  Identities=17%  Similarity=0.259  Sum_probs=30.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+  |.++.   ++|+++-+ ++||.|.+|.|+....
T Consensus        12 ~~~~~~l~v~nl--p~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   52 (103)
T 2cqg_A           12 VQKTSDLIVLGL--PWKTT---EQDLKEYF-STFGEVLMVQVKKDLK   52 (103)
T ss_dssp             CCCCCCEEEESC--CSSCC---HHHHHHHH-GGGSCEEEEEEEECSS
T ss_pred             cCCCCEEEEEcC--CCcCC---HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            355678889996  33332   46789999 6999999999987643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=84.04  E-value=3.3  Score=24.06  Aligned_cols=39  Identities=13%  Similarity=0.077  Sum_probs=29.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+-  .++   -++|+++-+ ++|| |.+|.|+....
T Consensus        13 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~g-i~~v~i~~~~~   51 (103)
T 2dng_A           13 EPPYTAYVGNLP--FNT---VQGDIDAIF-KDLS-IRSVRLVRDKD   51 (103)
T ss_dssp             SSCEEEEEESCC--TTC---CHHHHHHHT-TTSC-EEEEEEEECSS
T ss_pred             CCCeEEEEeCCC--CCC---CHHHHHHHH-HhCC-ceEEEEeecCC
Confidence            567889999983  333   246789999 6998 99999987653

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=83.80  E-value=1.8  Score=25.09  Aligned_cols=38  Identities=13%  Similarity=0.198  Sum_probs=28.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+++.|.+.|+-.. .+   -++|+++-+ ++||.|.++.|++
T Consensus         8 ~~~~~l~V~nlp~~-~~---t~~~l~~~F-~~~G~v~~v~i~~   45 (96)
T 2kvi_A            8 PPKSRLFIGNLPLK-NV---SKEDLFRIF-SPYGHIMQINIKN   45 (96)
T ss_dssp             -CCEEEEEESSTTS-CC---CHHHHHHHH-TTTCCCCEEEEET
T ss_pred             CCCCEEEEeCCCcc-cC---CHHHHHHHH-HhcCCEEEEEEeC
Confidence            56788888998421 23   247789999 6999999999863

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=83.39  E-value=2.5  Score=24.80  Aligned_cols=39  Identities=13%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             cccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100         24 VKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH   67 (76)
Q Consensus        24 v~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~   67 (76)
                      ..++++.|.+.|+=.. ++   -++++++-+ ++||.|.++.|.
T Consensus        18 ~~~~~~~l~V~nLp~~-~~---t~~~L~~~F-~~~G~v~~v~i~   56 (97)
T 2xnq_A           18 GSHMKSRLFIGNLPLK-NV---SKEDLFRIF-SPYGHIMQINIK   56 (97)
T ss_dssp             -CCTTCEEEEESCCSS-CC---CHHHHHHHH-GGGSCEEEEEEC
T ss_pred             CCCCCCEEEEeCCCcc-cC---CHHHHHHHH-HhcCCEEEEEEe
Confidence            3467888999998421 22   246788999 699999999985

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=83.31  E-value=2.4  Score=25.02  Aligned_cols=39  Identities=15%  Similarity=0.114  Sum_probs=29.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceE--------EEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVV--------RVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~--------~v~I~~~~   70 (76)
                      .+++.|.+.|+=  .++.   ++++++-+ ++||.|.        +|.|+...
T Consensus        13 ~~~~~l~V~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~v~i~~~~   59 (113)
T 2cpe_A           13 SDNSAIYVQGLN--DSVT---LDDLADFF-KQCGVVKMNKRTGQPMIHIYLDK   59 (113)
T ss_dssp             CCCCEEEEECCC--TTCC---HHHHHHHH-TTTSCBCBCSSSCCBSEECCBCT
T ss_pred             CCCCEEEEcCCC--CCCC---HHHHHHHH-HhcCCEeEccccCccCEEEEEeC
Confidence            567889999983  3333   46789999 6999999        68888753

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=83.23  E-value=2.1  Score=29.14  Aligned_cols=40  Identities=10%  Similarity=0.126  Sum_probs=30.3

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-  ..+.   ++++++-+ ++||.|.++.|+...
T Consensus        93 a~~~~~l~v~nl~--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~  132 (261)
T 3sde_A           93 ATHGAALTVKNLS--PVVS---NELLEQAF-SQFGPVEKAVVVVDD  132 (261)
T ss_dssp             CCCSSEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEEET
T ss_pred             cccCCcccccCCC--CCCC---HHHHHHHH-HhcCCeEEEEeeeCC
Confidence            3556788888883  3332   47899999 699999999998663

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=82.81  E-value=2  Score=30.49  Aligned_cols=41  Identities=17%  Similarity=0.380  Sum_probs=31.1

Q ss_pred             ccccceeeeeccCCCCccc------cchHHHHHHHHhhcCcceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVD------SDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~d------ddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      ..+++.|.+.|+-.  +++      +..++++++.. ++||.|.+|.|..
T Consensus       131 ~~~~rtLfVgnL~~--~~~~~~~~~~~tEe~L~~~F-~~fG~I~~v~v~~  177 (240)
T 3u1l_A          131 RKKNKTLYVGGIDG--ALNSKHLKPAQIESRIRFVF-SRLGDIDRIRYVE  177 (240)
T ss_dssp             CCCCCEEEEECTTG--GGTTCCCCHHHHHHHHHHHH-HTTSCEEEEEEEG
T ss_pred             ccCCceeecCCCCh--hhhcccccccCcHHHHHHHH-HccCCEEEEEEEC
Confidence            45678888888732  221      34689999999 6999999999875

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=82.58  E-value=1.6  Score=32.56  Aligned_cols=40  Identities=13%  Similarity=-0.033  Sum_probs=29.7

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      ..||+.|.+.|.=-+-.+.   ++++++.. ++||.|.+|.++.
T Consensus        15 ~~ps~~l~VgN~gl~~~~t---e~~L~~~F-~~~G~V~~v~~~~   54 (345)
T 3tht_A           15 SYATQSLVVANGGLGNGVS---RNQLLPVL-EKCGLVDALLMPP   54 (345)
T ss_dssp             SSCCSEEEEETCSGGGTCC---HHHHHHHH-HTTSCEEEEECCT
T ss_pred             CCCCCEEEEEcCCCCCCCC---HHHHHHHH-HhcCCeEEEEEeC
Confidence            4789999999962222222   46778999 6999999998865

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.53  E-value=1.4  Score=26.36  Aligned_cols=41  Identities=15%  Similarity=0.306  Sum_probs=30.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+-  .++.   ++++++-+ ++||.|.+|.|+....
T Consensus        24 ~~~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~   64 (116)
T 1x4b_A           24 KEQFRKLFIGGLS--FETT---EESLRNYY-EQWGKLTDCVVMRDPA   64 (116)
T ss_dssp             HHHHTEEEEECCT--TCCC---HHHHHHHH-TSSCCCSEEEEECCTT
T ss_pred             cCCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEECCC
Confidence            3556788999983  3333   46788999 6999999999988643

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=82.50  E-value=1.4  Score=26.20  Aligned_cols=38  Identities=13%  Similarity=0.008  Sum_probs=28.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+++.|.+.|+-  .++   -++|+++-+ ++||.|..+.|+..
T Consensus        13 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~i~~~~i~~~   50 (108)
T 1x4c_A           13 RSENRVVVSGLP--PSG---SWQDLKDHM-REAGDVCYADVYRD   50 (108)
T ss_dssp             SCCCEEEEESCC--SSC---CHHHHHHHH-GGGSCEEEEEEETT
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCEeEEEEecC
Confidence            345678888874  223   257788999 69999999999763

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=82.36  E-value=2  Score=25.49  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..++.|.+.|+=  .++.   ++|+++-+ ++||.|.+|.|.....
T Consensus        23 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~~   62 (114)
T 2cq4_A           23 RDARTVFCMQLA--ARIR---PRDLEDFF-SAVGKVRDVRIISDRN   62 (114)
T ss_dssp             HHHTEEEEESCC--TTCC---HHHHHHHH-TTTSCEEEEEECCSCC
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhCCCEeEEEEEecCC
Confidence            446789999983  3332   46789999 6999999999986553

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=82.32  E-value=1.4  Score=26.49  Aligned_cols=47  Identities=9%  Similarity=0.096  Sum_probs=33.0

Q ss_pred             CCCCccccccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         17 DSDLEPEVKEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        17 d~~l~~ev~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..++++. ..+++.|.+.|+-  ..+   -++|+++-+ ++||.|.++.|+..+
T Consensus        16 ~~~~~~~-~~~~~~l~V~nLp--~~~---te~~l~~~F-~~~G~i~~v~i~~~~   62 (108)
T 2jrs_A           16 ANNLQKG-SAGPMRLYVGSLH--FNI---TEDMLRGIF-EPFGRIESIQLMMDS   62 (108)
T ss_dssp             CCSSCCS-CSSCEEEEEECCC--SSC---CHHHHHHHH-TTTSCEEEEEEEEET
T ss_pred             ccccccC-CCCCCEEEEeCCC--CCC---CHHHHHHHH-HhcCCeEEEEEEEcC
Confidence            3344443 3556789999983  223   346789999 699999999998654

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=82.31  E-value=4  Score=25.98  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-.  .+   -++++++-+ ++||.|..|.|+...
T Consensus        70 ~~~~~l~V~nLp~--~~---t~~~L~~~F-~~~G~i~~v~i~~~~  108 (165)
T 1rk8_A           70 VEGWILFVTSIHE--EA---QEDEIQEKF-CDYGEIKNIHLNLDR  108 (165)
T ss_dssp             C-CEEEEEESCCT--TC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCCC--CC---CHHHHHHHh-hcCCCEEEEEEEecC
Confidence            5567899999843  23   357789999 699999999998764

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=82.08  E-value=0.55  Score=25.76  Aligned_cols=24  Identities=17%  Similarity=0.266  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.++..+.
T Consensus        13 ~~~l~~~F-~~~G~i~~v~i~~~~~   36 (75)
T 1iqt_A           13 EEKIREYF-GGFGEVESIELPMDNK   36 (75)
T ss_dssp             HHHHHHHH-HHHSCCSEECCCCSCC
T ss_pred             HHHHHHHH-HhcCCeEEEEEEecCC
Confidence            57789999 6999999999987543

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=81.86  E-value=2.1  Score=28.21  Aligned_cols=39  Identities=10%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+  |.++   -++|+++-+ ++||.|.+|.|+...
T Consensus        86 ~~~~~l~V~nL--p~~~---te~~L~~~F-~~~G~I~~v~i~~d~  124 (177)
T 2f3j_A           86 ETGAKLLVSNL--DFGV---SDADIQELF-AEFGTLKKAAVDYDR  124 (177)
T ss_dssp             TTCEEEEEECC--CSCC---CHHHHHHHH-HHTSCCSEEEECCCT
T ss_pred             CCCCEEEEeCC--CCCC---CHHHHHHHH-HhcCCeEEEEEEECC
Confidence            55678999998  3333   256789999 699999999998764

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=81.67  E-value=1.6  Score=25.33  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=29.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+=  .++   -++++++-+ ++||.|.++.|+...
T Consensus         7 ~~~~~l~V~nLp--~~~---t~~~l~~~F-~~~G~i~~v~i~~~~   45 (102)
T 2xs2_A            7 IMPNTVFVGGID--VRM---DETEIRSFF-ARYGSVKEVKIITDR   45 (102)
T ss_dssp             EEEEEEEEECCC--TTC---CHHHHHHHH-GGGSCEEEEEEEECT
T ss_pred             CCCCEEEEeCCC--CCC---CHHHHHHHH-HhCCCeEEEEEEECC
Confidence            456788888873  233   246788899 699999999998764

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=81.56  E-value=1.8  Score=26.25  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=25.9

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      |.|.+.|+-  .++.   ++|+++-+ ++||.|.++.|...++
T Consensus         1 R~l~V~nlp--~~~t---~~~l~~~f-~~~G~i~~v~i~~~~~   37 (166)
T 3md3_A            1 RVLYVGNLD--KAIT---EDILKQYF-QVGGPIANIKIMIDKN   37 (166)
T ss_dssp             CEEEEEEEE--TTCC---HHHHHHHH-GGGSCEEEEEEECCCC
T ss_pred             CEEEECCCC--CcCC---HHHHHHHH-HhcCCeEEEEEEECCC
Confidence            345566652  2232   46788999 6999999999987653

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=81.42  E-value=1.7  Score=26.14  Aligned_cols=39  Identities=13%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+-  .++.   ++|+++-+ ++||.|.+|.|....
T Consensus        34 ~~~~~l~V~nlp--~~~t---~~~l~~~F-~~~G~i~~v~i~~~~   72 (124)
T 2jwn_A           34 IDKRSVYVGNVD--YGST---AQDLEAHF-SSCGSINRITILCDK   72 (124)
T ss_dssp             HHHTEEEEEEEC--TTCC---HHHHHHHH-HTTSCEEEEEEEEEC
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-HhcCCEEEEEEEecC
Confidence            456789999983  2332   57789999 699999999998653

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=80.70  E-value=2.7  Score=31.77  Aligned_cols=40  Identities=15%  Similarity=0.240  Sum_probs=30.2

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..+++.|.+.|+-  .++.   +++|++.+ ++||.|..|.|+...
T Consensus        99 ~~~~~~lfV~nL~--~~~t---e~~L~~~F-~~~G~I~~v~i~~d~  138 (437)
T 3pgw_S           99 GDAFKTLFVARVN--YDTT---ESKLRREF-EVYGPIKRIHMVYSK  138 (437)
T ss_pred             CCCCCEEEEeCCC--CCCC---HHHHHHHH-HHcCCeeEEEeeccC
Confidence            3566889999973  2332   46789999 699999999997653

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.66  E-value=1.1  Score=25.55  Aligned_cols=37  Identities=11%  Similarity=0.153  Sum_probs=28.4

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+++.|.+.|+-.  ++   -++|+++-+ ++||.|.++.|.+
T Consensus         7 ~~~~~l~V~nlp~--~~---t~~~l~~~F-~~~G~v~~~~~~~   43 (90)
T 2dnp_A            7 GNTWKIFVGNVSA--AC---TSQELRSLF-ERRGRVIECDVVK   43 (90)
T ss_dssp             CCSCCEEEESCCT--TC---CHHHHHHHH-HHHSCEEEEEECS
T ss_pred             CCCCEEEEeCCCC--CC---CHHHHHHHH-HcCCCEEEEEEEC
Confidence            4567888899843  33   346788999 6999999999874

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=80.41  E-value=3.8  Score=24.16  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEe
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIH   67 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~   67 (76)
                      .+++.|.+.|+-... +.   ++|+++-+ ++||.|.+|.|+
T Consensus        25 ~~~~~l~V~nl~~~~-~t---~~~l~~~F-~~~G~v~~v~i~   61 (110)
T 1wf1_A           25 SINSRVFIGNLNTAL-VK---KSDVETIF-SKYGRVAGCSVH   61 (110)
T ss_dssp             TCSSEEEECSCCCSS-CC---HHHHHHHH-GGGSCCSEEEEE
T ss_pred             CCCcEEEEeCCCccc-CC---HHHHHHHH-HhCCCeEEEEEe
Confidence            455788889873220 22   57789999 699999999884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.51
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.08
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	97.59
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	97.03
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	96.82
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	96.08
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	95.99
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	95.94
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	95.83
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	95.7
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	95.63
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	95.47
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	95.42
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	95.24
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	95.09
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	94.85
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	94.47
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	93.98
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	93.55
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	93.54
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	93.33
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	93.13
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	93.01
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	92.72
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	92.6
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	92.51
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	92.38
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	92.27
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	91.88
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	91.86
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	91.77
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	91.42
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	90.86
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	90.77
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	90.72
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	90.47
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	90.42
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	90.41
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	90.26
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	90.04
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	89.93
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	89.53
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	89.22
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	89.08
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	88.47
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	88.34
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	88.16
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	88.15
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	88.12
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	88.07
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	87.99
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	87.75
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	87.64
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	86.77
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	86.61
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	86.12
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	85.98
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	85.52
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	85.31
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	85.2
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	85.2
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	83.05
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	82.55
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	80.77
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	80.74

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=8.9e-15  Score=91.10  Aligned_cols=47  Identities=30%  Similarity=0.384  Sum_probs=41.7

Q ss_pred             ccccceeeeeccCCCCcccc-----chHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDS-----DLEPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dd-----dl~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      |+||+||+|+|||+++++.+     ++.+||++|| +|||.|.+|.|++.+..
T Consensus         1 g~Ps~vl~l~N~~~~~~l~~~~~~~~i~edi~~e~-~k~G~v~~v~I~~~~~~   52 (104)
T d1o0pa_           1 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDEC-SKYGLVKSIEIPRPVDG   52 (104)
T ss_dssp             CCCCSEEEEESSCCTTTTTSHHHHHHHHHHHHHHH-TTTSCEEEEECCCCTTS
T ss_pred             CCCCcEEEEeCCCCHHHcCCchhHHHHHHHHHHHh-cccCceEEEEEeecCCC
Confidence            57999999999999999864     5889999999 69999999999986544

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.5e-11  Score=73.62  Aligned_cols=46  Identities=15%  Similarity=0.446  Sum_probs=39.6

Q ss_pred             ccccceeeeeccCCCCcccc------chHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDS------DLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dd------dl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..++|+|+|+|||+|.|+++      +|++||+++| +|||.|.+|.++....
T Consensus         5 ~~~~r~v~l~nmf~~~~~~~~~~~~~~i~edv~~~~-~~~G~V~~v~~~~~~~   56 (99)
T d2dita1           5 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVEC-SKFGQIRKLLLFDRHP   56 (99)
T ss_dssp             CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHG-GGTSCCSEEEEETTCT
T ss_pred             CCCccEEEEccCCCHHHhhcchHHHHHHHHHHHHHh-cCcccEEEEeccCCCC
Confidence            36789999999999998753      6889999999 5999999999987643

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.7e-05  Score=46.85  Aligned_cols=26  Identities=31%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             chHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         45 DLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        45 dl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ++.+|+..||-+|||+|.+|.|++..
T Consensus        38 ~~~ed~l~e~f~k~G~I~~v~I~~~~   63 (104)
T d1jmta_          38 EFFEEVFTEMEEKYGEVEEMNVCDNL   63 (104)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECCSS
T ss_pred             hhhHHHHHHHhccCCCEEEEEeecCC
Confidence            45666666664699999999998754

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.00058  Score=40.67  Aligned_cols=41  Identities=12%  Similarity=0.170  Sum_probs=33.4

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+||++|.++|+  |.++.   ++|+++-+ ++||.|.++.+.+..+
T Consensus        12 ~~ps~~l~v~nl--p~~~t---e~~l~~~F-~~fG~I~~~~~~~~k~   52 (104)
T d1wexa_          12 VSVSPVVHVRGL--CESVV---EADLVEAL-EKFGTICYVMMMPFKR   52 (104)
T ss_dssp             CCCCSEEEEESC--CSSCC---HHHHHHHH-TTTSCEEEEEEETTTT
T ss_pred             CCCCCEEEEeCC--CCCCC---HHHHHHhh-hhcccceEEEEEecce
Confidence            368999999998  55565   45899999 6999999999987543

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00072  Score=39.27  Aligned_cols=40  Identities=13%  Similarity=0.431  Sum_probs=33.7

Q ss_pred             cccceeeeeccCCCCcc-ccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEV-DSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~-dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .|++.|.+.|+  |.++ ++||++.+.+-| ++||.|.+|.+++
T Consensus         1 ~P~~tl~V~nL--p~~~t~~dl~~~l~~~f-~~~G~i~~i~~~~   41 (91)
T d1nu4a_           1 RPNHTIYINNL--NEKIKKDELKKSLHAIF-SRFGQILDILVSR   41 (91)
T ss_dssp             CCCSEEEEESC--CTTSCHHHHHHHHHHHH-GGGSCEEEEECCH
T ss_pred             CCCCEEEEeCC--CCCCCHHHHHHHHHHHh-cccccccceEEee
Confidence            36899999997  5565 468999999999 6999999999865

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0076  Score=34.28  Aligned_cols=39  Identities=23%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      +||++|.+.|+  |.++.   ++|+++-+ ++||.|.++.+....
T Consensus         8 pPs~tL~V~NL--p~~~t---e~~l~~~F-~~~G~v~~~~~~~~~   46 (88)
T d2adca2           8 PPSATLHLSNI--PPSVS---EEDLKVLF-SSNGGVVKGFKFFQK   46 (88)
T ss_dssp             CSCSEEEEECC--CTTCC---HHHHHHHH-HTTSCCEEEEEECSS
T ss_pred             CCCCEEEEECC--CCCCC---HHHHHHHh-hccCCEEEEEEeeec
Confidence            57999999999  55554   45788999 699999988776543

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.99  E-value=0.011  Score=34.32  Aligned_cols=38  Identities=5%  Similarity=0.075  Sum_probs=31.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      +||++|.+.|+  |.++.   ++++++-| ++||.|.++.+.+.
T Consensus        15 ~Ps~tl~V~nL--p~~~t---~~~l~~~f-~~~G~i~~~~~~~~   52 (97)
T d1whya_          15 NPTTRLWVGGL--GPNTS---LAALAREF-DRFGSIRTIDHVKG   52 (97)
T ss_dssp             CCCSCEEEECC--CSSCC---HHHHHHHH-HTTSCEEEEEECSS
T ss_pred             CCCCEEEEcCC--CCCCC---HHHHHHHH-HhhcccceEeeecc
Confidence            67899999999  44454   36899999 69999999998764

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.0096  Score=33.48  Aligned_cols=40  Identities=15%  Similarity=0.081  Sum_probs=31.2

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .|+++|.+.|+  |..+.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         7 ~~~~~l~V~nL--~~~~t---e~~l~~~F-~~~G~i~~v~i~~~~~   46 (83)
T d2cqca1           7 DPNCCLGVFGL--SLYTT---ERDLREVF-SKYGPIADVSIVYDQQ   46 (83)
T ss_dssp             CGGGCEEEESC--CSSCC---HHHHHHHH-HTTSCEEEEEEEECSS
T ss_pred             CCCCEEEEeCC--CCCCC---HHHHHHHH-HHhCCCcccccccccc
Confidence            46789999998  33443   36788999 6999999999987654

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.011  Score=34.80  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .++|+|.+.|+  |..+.   ++++++-+ ++||.|.+|.++..+
T Consensus         5 ~~~r~l~V~nL--p~~~t---e~~l~~~F-~~~G~v~~i~~~~~~   43 (114)
T d2f9da1           5 EVNRILYIRNL--PYKIT---AEEMYDIF-GKYGPIRQIRVGNTP   43 (114)
T ss_dssp             TCCSEEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEEEECST
T ss_pred             CCCCEEEEECC--CCCCC---HHHHHHHH-hhcCCeEeecccccC
Confidence            45789999998  44443   56788999 699999999998654

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0052  Score=35.96  Aligned_cols=37  Identities=24%  Similarity=0.178  Sum_probs=28.7

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      +++|.+.|+ .|+.+.   ++++++-+ ++||.|.+|.|...
T Consensus         2 ~~~l~V~nL-~p~~~t---e~~L~~~F-~~fG~I~~v~i~~~   38 (109)
T d2adca1           2 NSVLLVSNL-NPERVT---PQSLFILF-GVYGDVQRVKILFN   38 (109)
T ss_dssp             CSEEEEESC-CTTTCC---HHHHHHHH-HHHTCEEEEEECCT
T ss_pred             CCEEEEeCC-CcccCC---HHHHHHHH-hhccccceEEEEec
Confidence            578999998 333333   45889999 69999999999764

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.63  E-value=0.011  Score=33.31  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=31.3

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+++|.+.|+  |.++.+   +|+++-. ++||.|.++.+.+.
T Consensus         5 ~pP~~tl~V~nL--p~~~t~---~~l~~~f-~~~G~i~~v~~~~~   43 (83)
T d2b0ga1           5 QPPNQILFLTNL--PEETNE---MMLSMLF-NQFPGFKEVRLVPN   43 (83)
T ss_dssp             CSCCSEEEEESC--CTTCCH---HHHHHHH-TTSTTEEEEEECTT
T ss_pred             CCCCCEEEEECC--CCCCCH---HHHHhhh-ccCccEEEeeeecc
Confidence            367899999999  455544   5788899 69999999998754

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.47  E-value=0.0094  Score=34.50  Aligned_cols=42  Identities=10%  Similarity=0.029  Sum_probs=33.6

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +.+||||.+.|+-..    ...++|+++-| ++||.|.++.+....+
T Consensus         5 ~~~sr~v~v~nl~~~----~~t~~eL~~lF-~~fG~I~~i~i~~~k~   46 (89)
T d1x4da1           5 VETRRVVHIMDFQRG----KNLRYQLLQLV-EPFGVISNHLILNKIN   46 (89)
T ss_dssp             CCCCCEEEEESCCCS----SSHHHHHHTTT-GGGSCEEEEEECSSSS
T ss_pred             CCCCcEEEEECCCCC----cCCHHHHHHHH-HhhCCeEEEEeeccce
Confidence            478999999998322    24678999999 6999999999976543

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.017  Score=32.03  Aligned_cols=35  Identities=11%  Similarity=0.114  Sum_probs=27.2

Q ss_pred             eeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         31 KYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        31 l~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      |.+.|+  |.++.+   +|+++-+ ++||.|.++.|+....
T Consensus         5 l~V~nL--p~~~te---~~l~~~f-~~~G~v~~v~i~~~~~   39 (82)
T d1fxla1           5 LIVNYL--PQNMTQ---EEFRSLF-GSIGEIESCKLVRDKI   39 (82)
T ss_dssp             EEEESC--CTTCCH---HHHHHHH-HTTSCEEEEEEEECTT
T ss_pred             EEEECC--CCCCCH---HHHHHHH-HHhCCcccccceeecc
Confidence            778887  555554   6788999 6999999999986543

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.021  Score=32.62  Aligned_cols=41  Identities=17%  Similarity=0.135  Sum_probs=31.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      .+.|.|.+.|+  |..+.   ++++++-+ ++||.|.++.|....+.
T Consensus         6 ~~~~tl~V~nL--p~~~t---e~~l~~~F-~~~G~i~~v~i~~d~~~   46 (90)
T d2cqia1           6 GQPRTLYVGNL--SRDVT---EVLILQLF-SQIGPCKSCKMITEHTS   46 (90)
T ss_dssp             CCCCEEEEESC--CTTCC---HHHHHHHH-HHHSCEEEEEEECCCCS
T ss_pred             CCCCEEEEECC--CCCCC---HHHHHHHH-HhcCCceeeeeecccCc
Confidence            34578999998  44454   47888999 69999999999876543

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.011  Score=33.84  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=31.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         3 ~~~~tlfV~nL--p~~~t---e~~l~~~F-~~~G~i~~v~i~~d~~   42 (89)
T d2cqba1           3 TTKRVLYVGGL--AEEVD---DKVLHAAF-IPFGDITDIQIPLDYE   42 (89)
T ss_dssp             CCCSCEEEESC--CSSCC---HHHHHHHH-TTTSCCCCEECCCCSS
T ss_pred             CCCcEEEEeCC--CCcCC---HHHHHHHH-hhCCeEEecccccccc
Confidence            45788999998  33443   46889999 6999999999987654

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.015  Score=34.36  Aligned_cols=39  Identities=18%  Similarity=0.158  Sum_probs=28.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .++..|.+.|+  |.++.+   +++++-+ ++||.|.++.|+...
T Consensus         5 s~~~~v~V~NL--~~~vte---~~L~~~F-~~~G~i~~~~i~~~~   43 (108)
T d2adba1           5 SPVLRIIVENL--FYPVTL---DVLHQIF-SKFGTVLKIITFTKN   43 (108)
T ss_dssp             CCEEEEESCSC--CSTTHH---HHHHHHH-TTTSCEEEEEEEEET
T ss_pred             CCeEEEEEeCc--CCCCCH---HHHHHHH-ccCCcEEEEEEEeeC
Confidence            34445567888  444443   5889999 699999999997643

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.031  Score=31.64  Aligned_cols=41  Identities=20%  Similarity=0.223  Sum_probs=31.9

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++||++|.+.|+-.  ++.   ++|+++-+ ++||.|.++.+....+
T Consensus         5 ~~Ps~~l~V~nLp~--~~t---~~~L~~~f-~~~G~i~~v~~~~~~~   45 (88)
T d2cq1a1           5 GAPSRVLHIRKLPG--EVT---ETEVIALG-LPFGKVTNILMLKGKN   45 (88)
T ss_dssp             SSCCSEEEEESCCT--TCC---HHHHHHTT-TTTSCEEEEEEETTTT
T ss_pred             CCCCCEEEEeCCCC--CCC---HHHHHHHH-hcccccccccccccce
Confidence            47899999999653  233   56778889 6999999999886543

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.98  E-value=0.079  Score=30.24  Aligned_cols=39  Identities=15%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      .+.|.+.|+  |.++.+   +|+++-+ ++||.|.+|.++.....
T Consensus        11 ~~~l~v~nL--p~~~t~---~~L~~~F-~~~G~v~~v~~~~~~~~   49 (93)
T d2cq3a1          11 PKRLHVSNI--PFRFRD---PDLRQMF-GQFGKILDVEIIFNERG   49 (93)
T ss_dssp             CCEEEEESC--CTTCCH---HHHHHHG-GGTSCEEEEEEECCTTT
T ss_pred             CCEEEEECC--CCCCCH---HHHHHHH-hhcceeeeccccccccC
Confidence            456899999  455553   6889999 69999999999876543

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.55  E-value=0.062  Score=30.85  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      .+++.|.+.|+  |.++.+   +++++-+ ++||.|.+|.|+...
T Consensus         6 ~~~~~l~V~nL--p~~~~e---~~l~~~F-~~~G~i~~v~i~~~~   44 (94)
T d2cpha1           6 QTTSKILVRNI--PFQANQ---REIRELF-STFGELKTVRLPKKM   44 (94)
T ss_dssp             SCCCCEEEESC--CTTCCH---HHHHHHH-HTTSCEEEEECCCCC
T ss_pred             CCCCEEEEeCC--CCCCCH---HHHHHHH-HHhCCceEEEEEecc
Confidence            45677899998  444543   5688899 699999999997653

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.049  Score=31.73  Aligned_cols=41  Identities=17%  Similarity=0.209  Sum_probs=31.6

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..++++|.+.|+-... +   -++|+++-+ ++||.|.++.+.+..
T Consensus        15 ~~~~~~l~v~nLp~~~-~---te~~l~~~F-~~fG~V~~v~~~~~k   55 (99)
T d1x4fa1          15 QELGRVIHLSNLPHSG-Y---SDSAVLKLA-EPYGKIKNYILMRMK   55 (99)
T ss_dssp             SCCCCEEEEESCCCSS-C---CSHHHHTTT-TTTSCCSEEEEETTT
T ss_pred             CCCCCEEEEeCCcCCc-c---CHHHHHhhh-ccccceeEEEEeecC
Confidence            3678999999985422 1   236788999 699999999997653

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.067  Score=30.96  Aligned_cols=38  Identities=8%  Similarity=0.276  Sum_probs=30.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ++++.|.+.|+  |.++.   ++++++-. ++||.|.+|.|+..
T Consensus        16 ~~~~~l~v~nL--~~~~t---e~~L~~~F-~~fG~i~~v~i~~~   53 (96)
T d1x4ga1          16 PKNCTVYCGGI--ASGLT---DQLMRQTF-SPFGQIMEIRVFPE   53 (96)
T ss_dssp             SSCCEEEEECC--SSCCC---HHHHHHHH-HHHSCEEEEEEETT
T ss_pred             CCCCEEEEcCC--CCCCC---HHHHHHHH-HHhCCceEEEEEec
Confidence            44567999999  55555   46788999 69999999999864

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.061  Score=30.51  Aligned_cols=40  Identities=15%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+++.|.+.|+  |.++.   ++++++-+ ++||.|.++.|+....
T Consensus         6 ~~~~~i~V~nL--p~~~t---~~~l~~~f-~~~G~v~~v~i~~d~~   45 (90)
T d2cq0a1           6 DDNATIRVTNL--SEDTR---ETDLQELF-RPFGSISRIYLAKDKT   45 (90)
T ss_dssp             SSSEEEEEESC--CTTCC---HHHHHTTS-TTTCCEEEEEEEECSS
T ss_pred             CCCCEEEEECC--CCCCC---HHHHHHHH-HHhccccccccccccc
Confidence            45677899996  23333   34788999 6999999999987643

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.01  E-value=0.16  Score=28.61  Aligned_cols=40  Identities=15%  Similarity=0.228  Sum_probs=29.8

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++|.+.|+-..  +.   ++|+++-+ ++||.|.++.|...+.
T Consensus         5 ~~~~~l~V~nL~~~--~t---~~~l~~~F-~~~G~i~~v~i~~d~~   44 (88)
T d1rk8a_           5 VEGWILFVTSIHEE--AQ---EDEIQEKF-CDYGEIKNIHLNLDRR   44 (88)
T ss_dssp             C-CEEEEEESCCTT--CC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             CCCCEEEEeCCCCC--CC---HHHHHHHH-HHcCCccccccccccc
Confidence            34678999998432  33   46889999 6999999999887543

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.079  Score=31.34  Aligned_cols=42  Identities=5%  Similarity=-0.087  Sum_probs=33.2

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+.-|.+.|+=..---.|++++++++-| ++||.|.++.+.+.
T Consensus         4 ~~~~L~v~nl~~~v~~~d~~k~~l~~lF-~~~G~i~~~~~~k~   45 (104)
T d1weya_           4 GSSGLIACVANDDVFSESETRAKFESLF-RTYDKDTTFQYFKS   45 (104)
T ss_dssp             CCCEEEEECCCGGGGSTTTHHHHHHHHH-HTTCSSCEEEEETT
T ss_pred             CCceEEEEeCCchhcCcHHHHHHHHHHh-cccccceEEEEecC
Confidence            4567888887654445567889999999 79999999998764

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.60  E-value=0.041  Score=30.79  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.3

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++++++.+ ++||.|.+|.|+..+..
T Consensus        13 e~~l~~~F-~~~G~I~~v~i~~d~~t   37 (75)
T d1x0fa1          13 EEKIREYF-GGFGEVESIELPMDNKT   37 (75)
T ss_dssp             HHHHHHHH-HHHSCEEEEECCCCTTT
T ss_pred             HHHHHHHH-HHhCCcccccccccccc
Confidence            57899999 69999999999887543

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.071  Score=30.05  Aligned_cols=35  Identities=14%  Similarity=0.252  Sum_probs=25.4

Q ss_pred             eeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         31 KYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        31 l~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      |.+.|+  |..+.+   +|+++-+ ++||.|.++.|...+.
T Consensus         4 lfV~nl--p~~~te---~~l~~~F-~~~G~v~~v~i~~d~~   38 (85)
T d2u2fa_           4 LFIGGL--PNYLND---DQVKELL-TSFGPLKAFNLVKDSA   38 (85)
T ss_dssp             EEEETC--CSSCCS---HHHHHHH-TSSSCEEEEEEECCCS
T ss_pred             EEEECC--CCCCCH---HHHHHHH-HhcCccceEEeecccc
Confidence            455555  334433   6888999 6999999999987654

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.38  E-value=0.085  Score=29.24  Aligned_cols=37  Identities=11%  Similarity=0.226  Sum_probs=28.7

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..++.|.+.|. +   +.   ++++++-+ ++||.|.++.+....
T Consensus         3 ~~~~ti~V~~~-~---~t---e~~L~~~F-~~~G~I~~v~~~~~~   39 (79)
T d2bz2a1           3 RKGNTLYVYGE-D---MT---PTLLRGAF-SPFGNIIDLSMDPPR   39 (79)
T ss_dssp             CCCCEEEEECS-S---CC---HHHHHHHH-STTCCCSCEEEETTT
T ss_pred             CCCCEEEEECC-C---CC---HHHHHHHH-hccCccceeeeccCC
Confidence            34677888885 2   33   57899999 699999999998654

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.053  Score=31.41  Aligned_cols=40  Identities=23%  Similarity=0.251  Sum_probs=30.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+.|.|.+.|+  |.++.   ++|+++-+ ++||.|.+|.|.....
T Consensus         6 ~~~rtl~V~nL--p~~~t---e~~l~~~f-~~~G~i~~v~i~~~~~   45 (104)
T d1p1ta_           6 RSLRSVFVGNI--PYEAT---EEQLKDIF-SEVGPVVSFRLVYDRE   45 (104)
T ss_dssp             HHHSCEEEESC--CTTSC---HHHHHHHH-HTTSCCSEEEEEEETT
T ss_pred             CCCCEEEEECC--CCcCC---HHHHHHhh-hccccccccccccccc
Confidence            45678999998  33343   47889999 6999999999876543

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.1  Score=29.26  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=27.1

Q ss_pred             eeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         30 TKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        30 vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      -|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         8 ~lfV~nL--p~~~t---e~~L~~~F-~~~G~v~~v~i~~d~~   43 (85)
T d1fxla2           8 NLYVSGL--PKTMT---QKELEQLF-SQYGRIITSRILVDQV   43 (85)
T ss_dssp             EEEEESC--CTTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             EEEEeCC--CCCCC---HHHHHHHH-HHhCCccccccccccc
Confidence            3777777  33343   57889999 6999999999987543

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.86  E-value=0.099  Score=29.98  Aligned_cols=38  Identities=16%  Similarity=0.186  Sum_probs=27.8

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++-|.+.|+=  .++.   ++|+++-+ ++||.|.++.|+..+.
T Consensus         8 ~~~lfV~nLp--~~~t---e~~l~~~F-~~~G~i~~v~i~~d~~   45 (90)
T d2cqga1           8 TSDLIVLGLP--WKTT---EQDLKEYF-STFGEVLMVQVKKDLK   45 (90)
T ss_dssp             CCCEEEESCC--SSCC---HHHHHHHH-GGGSCEEEEEEEECSS
T ss_pred             CCeEEEECCC--CCCC---HHHHHHHH-HhhcccceeeeccCCC
Confidence            4556777752  2333   36899999 6999999999998654

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.12  Score=29.06  Aligned_cols=38  Identities=21%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+-|.+.|+  |.++.   ++|+++-+ ++||.|.+|.+...
T Consensus         3 ~~s~~lfV~nL--p~~~t---e~~L~~~F-~~~G~v~~v~~~~~   40 (88)
T d1wf0a_           3 SGSSGVFVGRC--TGDMT---EDELREFF-SQYGDVMDVFIPKP   40 (88)
T ss_dssp             SCCCEEEEESC--CSSSC---HHHHHHHS-TTTSCCCEEECCSS
T ss_pred             CCCCEEEEeCC--CCCCC---HHHHHHHH-HHcCCceEEEEeec
Confidence            35678888888  44444   47889999 69999999987654

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.092  Score=28.88  Aligned_cols=25  Identities=36%  Similarity=0.554  Sum_probs=21.2

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++++++-+ ++||.|.++.|+..+..
T Consensus        13 e~~l~~~F-~~~G~i~~~~i~~d~~t   37 (75)
T d1hd0a_          13 KKDLKDYF-SKFGEVVDCTLKLDPIT   37 (75)
T ss_dssp             HHHHHHHH-HTTSCEEEEECCCBTTT
T ss_pred             HHHHHHHH-HhhccccccccccCCCC
Confidence            47899999 69999999999886543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.15  Score=28.09  Aligned_cols=24  Identities=8%  Similarity=0.142  Sum_probs=20.5

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.|+..+.
T Consensus        14 e~~l~~~F-~~~G~i~~v~i~~d~~   37 (80)
T d1cvja1          14 EAMLYEKF-SPAGPILSIRVCRDMI   37 (80)
T ss_dssp             HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             HHHHHHHH-HHhCCEeEEEEEeccc
Confidence            46889999 6999999999998654

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.77  E-value=0.086  Score=29.03  Aligned_cols=36  Identities=11%  Similarity=0.056  Sum_probs=27.3

Q ss_pred             eeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         30 TKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        30 vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .|.+.|+  |.++.+   +|+++-+ ++||.|.++.|.+.+.
T Consensus         4 ~l~V~nL--p~~~t~---~~l~~~F-~~~G~v~~~~i~~~~~   39 (82)
T d1b7fa1           4 NLIVNYL--PQDMTD---RELYALF-RAIGPINTCRIMRDYK   39 (82)
T ss_dssp             EEEEECC--CTTCCH---HHHHHHH-HTTSCEEEEECCEETT
T ss_pred             EEEEeCC--CCCCCH---HHHHHHH-HHhCCcceeeeeeecc
Confidence            4777887  455543   6789999 6999999999987543

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.17  Score=27.50  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=21.4

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++|+++-+ ++||.|.++.++..+..
T Consensus        16 e~~l~~~F-~~~G~i~~~~~~~~~~~   40 (79)
T d1l3ka2          16 EHHLRDYF-EQYGKIEVIEIMTDRGS   40 (79)
T ss_dssp             HHHHHHHH-TTTSCEEEEEEEECTTT
T ss_pred             HHHHHHHH-HHhccccccccccCCCC
Confidence            47899999 69999999999887654

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=90.47  E-value=0.18  Score=27.98  Aligned_cols=36  Identities=22%  Similarity=0.356  Sum_probs=27.1

Q ss_pred             eeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         30 TKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        30 vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      -|.+.|+  |..+.   ++++++-+ ++||.|.++.|+..+.
T Consensus         8 ~lfV~nl--p~~~t---e~~l~~~F-~~~G~i~~~~~~~d~~   43 (85)
T d1b7fa2           8 NLYVTNL--PRTIT---DDQLDTIF-GKYGSIVQKNILRDKL   43 (85)
T ss_dssp             EEEEESC--CTTCC---HHHHHHHH-TSSSCEEEEEEEECTT
T ss_pred             EEEEeCC--CCCCC---HHHHHHHH-HhhCCEeeeeeecccc
Confidence            3778887  33343   46789999 6999999999987643

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.42  E-value=0.1  Score=28.92  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=20.5

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++|+++-+ ++||.|.++.|+.....
T Consensus        12 ~~~l~~~F-~~~G~v~~v~i~~~~~~   36 (85)
T d2cpfa1          12 EETLKGVF-SKVGAIKSCTISKKKNK   36 (85)
T ss_dssp             HHHHHHHH-HTTSCEEEEEEEEEECT
T ss_pred             HHHHHHHH-HHhCCccccceeccccc
Confidence            47889999 69999999999875443

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.41  E-value=0.31  Score=27.18  Aligned_cols=39  Identities=18%  Similarity=0.281  Sum_probs=29.8

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+.|.+.|+  |.++.   ++++++-+ ++||.|..+.+.....
T Consensus         7 ~~~tlfV~nL--p~~~t---e~~l~~~f-~~~G~v~~~~~~~~~~   45 (98)
T d1x4ha1           7 EGKTVFIRNL--SFDSE---EEALGEVL-QQFGDLKYVRVVLHPD   45 (98)
T ss_dssp             CCCCEEEESC--CTTCC---HHHHHHHH-HTTSCEEEEECCBCSS
T ss_pred             CCCEEEEcCC--CCcCC---HHHHHHHH-hccccceeeeeccccc
Confidence            3577889998  44443   56789999 6999999999877643

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.18  Score=28.23  Aligned_cols=37  Identities=8%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      |-|.+.|+=  .++.   ++|+++-+ ++||.|.++.|+....
T Consensus         7 ~~lfV~nlp--~~~t---e~~l~~~F-~~~G~i~~v~i~~d~~   43 (84)
T d1l3ka1           7 RKLFIGGLS--FETT---DESLRSHF-EQWGTLTDCVVMRDPN   43 (84)
T ss_dssp             GEEEEESCC--TTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             cEEEEECCC--CCCC---HHHHHHHH-Hhhccccceeeccccc
Confidence            456677652  2232   47889999 6999999999987654

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.04  E-value=0.16  Score=29.01  Aligned_cols=38  Identities=11%  Similarity=0.133  Sum_probs=28.7

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++-|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+....
T Consensus         8 ~~~lfV~nL--~~~~t---~~~l~~~F-~~~g~v~~v~i~~d~~   45 (99)
T d1whwa_           8 SGRLFVRNL--SYTSS---EEDLEKLF-SAYGPLSELHYPIDSL   45 (99)
T ss_dssp             CEEEEEECC--CTTCC---HHHHHHHH-HTTSCEEEEECCCCTT
T ss_pred             CCEEEEECC--CCcCC---HHHHHHHH-HhcCCceeeeeccccc
Confidence            445888888  33444   35899999 6999999999987543

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.93  E-value=0.1  Score=29.07  Aligned_cols=24  Identities=21%  Similarity=0.418  Sum_probs=20.4

Q ss_pred             HHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         48 PEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        48 ~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      +++++-+ ++||.|.++.|+..+..
T Consensus        15 ~~l~~~F-~~~G~i~~v~i~~d~~t   38 (77)
T d1uawa_          15 EGLREYF-GQFGEVKECLVMRDPLT   38 (77)
T ss_dssp             HHHHHHH-TTTSCCCCEEEECCCCS
T ss_pred             HHHHHHH-HHhCCcceeeeecccCC
Confidence            5789999 69999999999887653

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.21  Score=27.99  Aligned_cols=38  Identities=11%  Similarity=0.178  Sum_probs=28.5

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +|.|.+.|+-.  ++.   ++|+++-| ++||+|.++.+.+..+
T Consensus         6 ~rtvfV~nlp~--~~t---e~~l~~~F-~~~G~v~~v~l~~~~~   43 (85)
T d1zh5a2           6 NRSVYIKGFPT--DAT---LDDIKEWL-EDKGQVLNIQMRRTLH   43 (85)
T ss_dssp             TTEEEEECCCT--TCC---HHHHHHHH-TTSCCEEEEEEEECTT
T ss_pred             cCEEEEECCCC--CCC---HHHHHHHH-HHhcccccceeeeecc
Confidence            46778888633  232   46889999 6999999999987653

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=0.24  Score=28.13  Aligned_cols=41  Identities=17%  Similarity=0.196  Sum_probs=31.0

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      .+|+.|.+.|+=.  .+.   ++++++-+ ++||.|.+|.|+..+..
T Consensus         5 ~~s~tlfV~nlp~--~~t---e~~l~~~F-~~~G~i~~v~i~~~~~~   45 (93)
T d1h2vz_           5 KKSCTLYVGNLSF--YTT---EEQIYELF-SKSGDIKKIIMGLDKMK   45 (93)
T ss_dssp             TTCCEEEEESCCT--TCC---HHHHHHHH-GGGSCEEEEEEEECTTT
T ss_pred             CCCCEEEEeCCCC--CCC---HHHHHHHH-HHHCCcceecccccccc
Confidence            4567889999743  232   47889999 69999999999876543

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.18  Score=29.52  Aligned_cols=38  Identities=11%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+-|.+.|+  |.++.   ++|+++-+ ++||.|.++.|+....
T Consensus        20 ~~~lfVgnL--p~~~t---e~~L~~~F-~~~G~i~~~~i~~d~~   57 (103)
T d1x4ba1          20 FRKLFIGGL--SFETT---EESLRNYY-EQWGKLTDCVVMRDPA   57 (103)
T ss_dssp             HTEEEEECC--TTCCC---HHHHHHHH-TSSCCCSEEEEECCTT
T ss_pred             CCEEEEeCC--CCcCC---HHHHHHHH-HhhCcccceeeccccc
Confidence            467888887  44443   46899999 6999999999987654

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.47  E-value=0.33  Score=26.82  Aligned_cols=37  Identities=8%  Similarity=0.058  Sum_probs=28.5

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      .+|+|.+.|+  |.++.+   +|+++-| ++||.|..+.+...
T Consensus         7 ~~k~l~V~nL--p~~~te---~~l~~~F-~~~g~i~~~~~~~~   43 (86)
T d2cpda1           7 SVKILYVRNL--MLSTSE---EMIEKEF-NNIKPGAVERVKKI   43 (86)
T ss_dssp             CCCEEEEESC--CTTCCH---HHHHHHH-HTTSTTCEEEEEEC
T ss_pred             CCCEEEEcCC--CCCCCH---HHHHHhh-cccceeeeEEEccc
Confidence            4689999998  445553   5889999 69999988887654

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.34  E-value=0.76  Score=26.28  Aligned_cols=37  Identities=14%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      .+.+.|.+.|+  |.++.+   +|+++-+ ++||.|.++.|..
T Consensus        13 ~~~~~i~V~Nl--p~~~~~---~~L~~~F-~~~G~v~~~~i~~   49 (98)
T d1wg4a_          13 RSDFRVLVSGL--PPSGSW---QDLKDHM-REAGDVCYADVQK   49 (98)
T ss_dssp             SCSCEEEEECC--CSSCCH---HHHHHHH-TTSSCEEEEEEET
T ss_pred             CCCCEEEEECC--CCCCCH---HHHHHHH-Hhhcccccccccc
Confidence            34567999999  544543   4788899 6999999999875

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.16  E-value=0.19  Score=27.65  Aligned_cols=24  Identities=8%  Similarity=0.389  Sum_probs=20.2

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.|+...+
T Consensus        14 ~~~l~~~F-~~~G~v~~~~i~~~~~   37 (78)
T d1no8a_          14 DADIQELF-AEFGTLKKAAVHYDRS   37 (78)
T ss_dssp             HHHHHHHH-HHHSCEEEEEESCSSC
T ss_pred             HHHHHHHH-HHhCCCeEEEEEEeec
Confidence            47889999 6999999999987643

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.15  E-value=0.14  Score=29.70  Aligned_cols=36  Identities=22%  Similarity=0.358  Sum_probs=26.0

Q ss_pred             cceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         28 CNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        28 s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      ++.|.+.|+- +....   ++|+++-+ ++||.|.++.|++
T Consensus        15 ~~~lfV~nL~-~~~~~---~~~L~~~F-~~~G~i~~~~i~r   50 (98)
T d1wf2a_          15 NSRVFIGNLN-TLVVK---KSDVEAIF-SKYGKIVGCSVHK   50 (98)
T ss_dssp             CCCEEEEEEC-TTTCC---HHHHHHSS-TTSSCEEEEEEET
T ss_pred             CcEEEEeCCC-cccCC---HHHHHHHH-hhcCCEEEEEEeC
Confidence            4558899983 12222   34789999 6999999999964

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.12  E-value=0.23  Score=27.79  Aligned_cols=38  Identities=16%  Similarity=0.192  Sum_probs=26.3

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ..+.|.+.|+=.  ++-+  ++++++-+ ++||.|.++.|+..
T Consensus         3 e~~~l~V~nLp~--~~t~--ed~l~~~F-~~~G~i~~v~i~~~   40 (86)
T d2ghpa3           3 EGREIMIRNLST--ELLD--ENLLRESF-EGFGSIEKINIPAG   40 (86)
T ss_dssp             TTTEEEEEEECT--TTCC--HHHHHHHH-GGGSCEEEEECCSC
T ss_pred             CCCEEEEECCCC--Cccc--HHHHHHHH-Hhhhhccceeeecc
Confidence            357788888632  1111  23588999 69999999998764

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.32  Score=28.29  Aligned_cols=41  Identities=12%  Similarity=0.067  Sum_probs=29.6

Q ss_pred             ccccceeeeeccCCCCccccc-hHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSD-LEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~ddd-l~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      ..||+.+.+.|    +-+..+ -++|+++-. ++||.|.++.+....
T Consensus        15 ~~pt~~l~V~n----g~L~~~vte~~L~~~F-~~~G~i~~i~~~~~k   56 (101)
T d2cq2a1          15 SYATQSLVVAN----GGLGNGVSRNQLLPVL-EKCGLVDALLMPPNK   56 (101)
T ss_dssp             SSCCSEEEEET----CTGGGTCCHHHHHHHH-HHHSCEEEEECCTTC
T ss_pred             CCCCceEEEEC----CCCCCCCCHHHHHHHH-HhhCcccEEeeccCc
Confidence            36788898888    222222 257888899 699999999887643

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.99  E-value=0.32  Score=28.05  Aligned_cols=37  Identities=5%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +-|.+.|+  |..+.   ++|+++-+ ++||.|.++.|+....
T Consensus        11 ~~lfV~nL--p~~~t---e~~l~~~F-~~~G~i~~v~i~~d~~   47 (103)
T d2cqda1          11 TKIFVGGL--PYHTT---DASLRKYF-EGFGDIEEAVVITDRQ   47 (103)
T ss_dssp             SEEEEECC--CSSCC---HHHHHHHH-HTTSCEEEEEESCCSS
T ss_pred             cEEEEeCC--CCcCc---HHHHHHHH-hhcccccceecccccc
Confidence            34888888  44444   46788889 6999999999987654

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=0.84  Score=25.66  Aligned_cols=39  Identities=21%  Similarity=0.171  Sum_probs=28.7

Q ss_pred             ccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         27 ECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        27 ~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +.+.|.+.|+=.  ++.   ++|+++-+ ++||.|.++.|.....
T Consensus         8 ~~~tlfV~nLp~--~~t---~~~l~~~F-~~~G~v~~v~~~~d~~   46 (93)
T d1x5ua1           8 QDATVYVGGLDE--KVS---EPLLWELF-LQAGPVVNTHMPKDRV   46 (93)
T ss_dssp             TTTEEEEECCCT--TCC---HHHHHHHH-HTTSCEEEEECCBCSS
T ss_pred             CCCEEEEeCCCC--cCC---HHHHHHHH-HHhCCccccceeeccc
Confidence            345688888733  232   47889999 6999999999977543

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.64  E-value=0.2  Score=26.80  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-+ ++||.|.++.+...+.
T Consensus        12 e~~l~~~F-~~~G~v~~~~~~~~~~   35 (72)
T d1x4ea1          12 DQDLVKLC-QPYGKIVSTKAILDKT   35 (72)
T ss_dssp             HHHHHTTS-TTTSCEEEEEEECCSS
T ss_pred             HHHHHHHH-hhhccccccccccccc
Confidence            35789999 6999999999887654

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.77  E-value=0.22  Score=27.96  Aligned_cols=35  Identities=26%  Similarity=0.406  Sum_probs=27.0

Q ss_pred             eeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCC
Q psy18100         30 TKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELP   70 (76)
Q Consensus        30 vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~   70 (76)
                      -|.+.|+-.  ++.   ++|+++-| ++||.|.++.+++..
T Consensus        10 ~l~V~nLp~--~~~---~~~l~~~F-~~~G~i~~i~~~~~k   44 (86)
T d2cpja1          10 RLFVGNLPP--DIT---EEEMRKLF-EKYGKAGEVFIHKDK   44 (86)
T ss_dssp             EEEEESCCT--TCC---HHHHHHHT-STTCCCSEEEEETTT
T ss_pred             EEEEECCCC--CCC---HHHHHHHH-HHhCCceEeeeeccc
Confidence            378888753  343   37899999 699999999998654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.61  E-value=0.049  Score=31.21  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEec
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHE   68 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~   68 (76)
                      +.||+.|.+.|+  |.++.+   +|+++-+ ++||.|.++.+..
T Consensus        15 ~~ps~tl~V~nL--p~~~t~---~~l~~~f-~~~G~v~~~~~~~   52 (102)
T d2cpxa1          15 GEPNKVLYLKNL--SPRVTE---RDLVSLF-ARFQEKKGPPIQF   52 (102)
T ss_dssp             CSCCSEEEEECC--CTTCCH---HHHHHHT-HHHHHSSSSCCEE
T ss_pred             CCCCCEEEEeCC--CCCCCH---HHHHHHH-hhccceeeEEeec
Confidence            467899999999  445543   6788889 6999998887764

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.12  E-value=0.22  Score=26.67  Aligned_cols=24  Identities=21%  Similarity=0.229  Sum_probs=20.3

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++|+++-| ++||.+..+.++....
T Consensus        13 e~~l~~~F-~~~G~i~~~~~~~~~~   36 (75)
T d2msta_          13 VEDVKHYF-EQFGKVDDAMLMFDKT   36 (75)
T ss_dssp             HHHHHHHH-HTTSCCSEECCBCCTT
T ss_pred             HHHHHHHH-HHhCCcceeeeeeecc
Confidence            56899999 6999999999877654

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.98  E-value=0.17  Score=28.67  Aligned_cols=21  Identities=19%  Similarity=0.439  Sum_probs=17.2

Q ss_pred             HHHHhhcCcceEEEEEecCCCC
Q psy18100         51 KDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        51 ~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++-. ++||+|.+|.|++.+..
T Consensus        29 ~e~F-~~~G~I~~v~i~~~~~~   49 (89)
T d2cpia1          29 PEYF-GKFGKIHKVVINNSTSY   49 (89)
T ss_dssp             TTTT-TTTSCEEEEEEECCSSC
T ss_pred             HHHh-cccCCceEEEEeeccCc
Confidence            6678 69999999999887543

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.52  E-value=1.2  Score=26.87  Aligned_cols=41  Identities=12%  Similarity=0.215  Sum_probs=31.1

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ..+++.|.+.|+  |..+.   ++++++-+ ++||.|..+.|.....
T Consensus        94 ~~~~~~i~V~~l--p~~~t---e~~L~~~f-~~~G~v~~~~i~~~~~  134 (183)
T d1u1qa_          94 HLTVKKIFVGGI--KEDTE---EHHLRDYF-EQYGKIEVIEIMTDRG  134 (183)
T ss_dssp             TCCCSEEEEECC--CTTCC---HHHHHHHH-GGGSCEEEEEEEECTT
T ss_pred             ccccceeEEccC--CCcCC---HHHHhhhh-ccCCceeeeeeecccc
Confidence            355678899998  44444   36889999 6999999999887544

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.31  E-value=0.56  Score=25.56  Aligned_cols=25  Identities=12%  Similarity=0.186  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhcCcceEEEEEecCCCC
Q psy18100         47 EPEVKDECNTKYGEVVRVIIHELPTT   72 (76)
Q Consensus        47 ~~eV~eEC~~KyG~V~~v~I~~~~~~   72 (76)
                      ++++++-. ++||.|.++.++..++.
T Consensus        14 ~~~l~~~F-~~~G~I~~v~~~~~~~~   38 (75)
T d2ghpa2          14 QNKVYKYF-KHCGPIIHVDVADSLKK   38 (75)
T ss_dssp             HHHHHHHH-GGGSCEEEEEEEECTTS
T ss_pred             HHHHHHHH-hcCCceEEEEEEeeccc
Confidence            57889999 69999999999876654

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.20  E-value=0.32  Score=27.74  Aligned_cols=39  Identities=15%  Similarity=0.292  Sum_probs=29.0

Q ss_pred             ccccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecC
Q psy18100         25 KEECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        25 ~~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      ...++.|.+.|+=.  ++.   ++|+++=| ++||.|.+|.|++.
T Consensus         7 ~r~~~~l~V~nLp~--~~t---~~~L~~~F-~~fG~I~~v~l~~~   45 (111)
T d1whxa_           7 GRSKTVILAKNLPA--GTL---AAEIQETF-SRFGSLGRVLLPEG   45 (111)
T ss_dssp             SEEEEEEEEESCCT--TCC---HHHHHHHH-HTTSCEEEEECCSS
T ss_pred             CCCCCEEEEECCCC--CCC---HHHHHhhh-hccCCccEEEeecc
Confidence            34556899999742  233   36788999 69999999999754

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.20  E-value=1.1  Score=25.06  Aligned_cols=40  Identities=18%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .+.+.|.+.|+  |.++.+   +|+++-+ ++||.|..+.+.+...
T Consensus        12 ~~~~~l~V~nL--p~~~t~---~~l~~~F-~~~G~v~~~~~~~~~~   51 (95)
T d1x4aa1          12 NNDCRIYVGNL--PPDIRT---KDIEDVF-YKYGAIRDIDLKNRRG   51 (95)
T ss_dssp             CCSSEEEEESC--CTTCCH---HHHHHHH-GGGSCEEEEEECCSSS
T ss_pred             CCCCEEEEECC--CCCCCH---HHHHHHH-hcCCceEEEEeccccc
Confidence            34456889998  344443   6788899 6999999999876543

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=1.2  Score=25.30  Aligned_cols=40  Identities=13%  Similarity=0.142  Sum_probs=30.1

Q ss_pred             cccceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         26 EECNTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        26 ~~s~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      ++++.|.+.|+=  .++.   ++|+++-+ ++||.|.++.+.....
T Consensus        16 p~~~~l~V~nLp--~~~t---e~~l~~~F-~~~G~i~~~~~~~~~~   55 (102)
T d2cpza1          16 PEGANLFIYHLP--QEFG---DQDLLQMF-MPFGNVVSAKVFIDKQ   55 (102)
T ss_dssp             STTCCEEEESCC--SSCC---HHHHHHHH-GGGSCCSEEEEEECSS
T ss_pred             CCCCEEEEeCCC--CCCC---HHHHHHHH-Hhhccccccceeeecc
Confidence            456779999973  3343   46889999 6999999999876543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.55  E-value=0.77  Score=25.49  Aligned_cols=37  Identities=11%  Similarity=0.250  Sum_probs=27.7

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      .-|.+.|+  |.++.   ++|+++-+ ++||.|.++.|....+
T Consensus         9 ~~l~V~nL--p~~~t---~~~l~~~F-~~~G~v~~~~i~~~~~   45 (89)
T d1cvja2           9 GNIFIKNL--DKSID---NKALYDTF-SAFGNILSCKVVCDEN   45 (89)
T ss_dssp             TEEEEESC--CSSCC---HHHHHHHH-HTTSCEEEEEECCBTT
T ss_pred             CEEEEeCC--CCCCC---HHHHHHHH-HhcCCceEEEEEeecC
Confidence            44788887  33443   46788899 6999999999987654

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.77  E-value=0.52  Score=27.65  Aligned_cols=23  Identities=9%  Similarity=0.010  Sum_probs=19.8

Q ss_pred             hHHHHHHHHhhcCcceEEEEEecC
Q psy18100         46 LEPEVKDECNTKYGEVVRVIIHEL   69 (76)
Q Consensus        46 l~~eV~eEC~~KyG~V~~v~I~~~   69 (76)
                      -++++++-+ ++||.|..|.|.+.
T Consensus        24 tee~Lk~~F-~~fG~V~~v~i~~~   46 (113)
T d1owxa_          24 CREDLHILF-SNHGEIKWIDFVRG   46 (113)
T ss_dssp             CHHHHHHHT-CSSCCEEEEECCTT
T ss_pred             CHHHHHHHH-HhcCChheEEEecC
Confidence            467889999 69999999999864

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.74  E-value=0.53  Score=26.07  Aligned_cols=37  Identities=14%  Similarity=0.301  Sum_probs=26.1

Q ss_pred             ceeeeeccCCCCccccchHHHHHHHHhhcCcceEEEEEecCCC
Q psy18100         29 NTKYGENMVGPGEVDSDLEPEVKDECNTKYGEVVRVIIHELPT   71 (76)
Q Consensus        29 ~vl~L~NMv~~~e~dddl~~eV~eEC~~KyG~V~~v~I~~~~~   71 (76)
                      +-|.+.|+=  ..+.   ++|+++-+ ++||.|.++.+.....
T Consensus         6 ~kifV~nLp--~~~t---~~~l~~~F-~~~G~i~~~~~~~~~~   42 (90)
T d1x5sa1           6 GKLFVGGLS--FDTN---EQSLEQVF-SKYGQISEVVVVKDRE   42 (90)
T ss_dssp             SEEEEESCC--TTCC---HHHHHHHH-HHHSCCCEEEECCCSS
T ss_pred             CEEEEECCC--CcCC---HHHHHHhh-hccccccceeeccccc
Confidence            346777763  2333   36889999 6999999998776543