Psyllid ID: psy18108


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
MAEDASAEATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLGLNLSKH
cccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccHHHHHHHHccccccc
ccccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHHHccccccc
MAEDASAEATLALFGQmksnnelktenpEHLKQFEKFIRDFsksyptkeEVAKRFAVFEDNLKLIEDLnkgehgtatyginhlsdLTREEMKSRlglnlskh
MAEDASAEATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDlnkgehgtatyginhlsdltreemksrlglnlskh
MAEDASAEATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLGLNLSKH
***********************************KFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHL*******************
*****SAEATLALFGQM*************LKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKS**GL*****
********ATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLGLNLSKH
*********TLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLGLNLS**
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oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MAEDASAEATLALFGQMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRLGLNLSKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query102 2.2.26 [Sep-21-2011]
Q9VN93 614 Putative cysteine protein yes N/A 0.656 0.109 0.434 5e-08
O23791 351 Fruit bromelain OS=Ananas N/A N/A 0.627 0.182 0.328 6e-07
P25804 363 Cysteine proteinase 15A O N/A N/A 0.774 0.217 0.433 6e-07
Q91GE3 323 Viral cathepsin OS=Epiphy N/A N/A 0.656 0.207 0.371 1e-06
Q9YMP9 356 Viral cathepsin OS=Lymant N/A N/A 0.647 0.185 0.376 1e-06
O10364 324 Viral cathepsin OS=Orgyia N/A N/A 0.637 0.200 0.417 2e-06
Q9UBX1 484 Cathepsin F OS=Homo sapie yes N/A 0.588 0.123 0.35 2e-06
P41721 323 Viral cathepsin OS=Bombyx N/A N/A 0.627 0.198 0.388 2e-06
Q91CL9 324 Viral cathepsin OS=Anther N/A N/A 0.627 0.197 0.411 3e-06
P25783 323 Viral cathepsin OS=Autogr N/A N/A 0.627 0.198 0.388 3e-06
>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2 Back     alignment and function desciption
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 29  EHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTR 88
           +HL  F KF   F + Y +  E   R  +F  NLK IE+LN  E G+A YGI   +D+T 
Sbjct: 305 DHL--FYKFQVRFGRRYVSTAERQMRLRIFRQNLKTIEELNANEMGSAKYGITEFADMTS 362

Query: 89  EEMKSRLGL 97
            E K R GL
Sbjct: 363 SEYKERTGL 371




May have a role in autophagic cell death.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -
>sp|O23791|BROM1_ANACO Fruit bromelain OS=Ananas comosus PE=1 SV=1 Back     alignment and function description
>sp|P25804|CYSP_PEA Cysteine proteinase 15A OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q91GE3|CATV_NPVEP Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1 Back     alignment and function description
>sp|Q9YMP9|CATV_NPVLD Viral cathepsin OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=VCATH PE=3 SV=1 Back     alignment and function description
>sp|O10364|CATV_NPVOP Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1 Back     alignment and function description
>sp|Q9UBX1|CATF_HUMAN Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1 Back     alignment and function description
>sp|P41721|CATV_NPVBM Viral cathepsin OS=Bombyx mori nuclear polyhedrosis virus GN=VCATH PE=1 SV=1 Back     alignment and function description
>sp|Q91CL9|CATV_NPVAP Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1 Back     alignment and function description
>sp|P25783|CATV_NPVAC Viral cathepsin OS=Autographa californica nuclear polyhedrosis virus GN=VCATH PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
242014216 434 Cathepsin F precursor, putative [Pedicul 0.784 0.184 0.475 8e-11
156546466 1036 PREDICTED: hypothetical protein LOC10012 0.813 0.080 0.4 6e-09
348528696 475 PREDICTED: cathepsin F-like [Oreochromis 0.735 0.157 0.4 7e-09
17543258 343 Protein Y40H7A.10 [Caenorhabditis elegan 0.784 0.233 0.362 9e-09
383863617 884 PREDICTED: uncharacterized protein LOC10 0.627 0.072 0.492 1e-08
118350314 389 Papain family cysteine protease containi 0.833 0.218 0.413 2e-08
83944664 471 cathepsin F like protease [Glossina mors 0.656 0.142 0.478 2e-08
350421176 884 PREDICTED: hypothetical protein LOC10074 0.627 0.072 0.492 2e-08
289740839 471 cysteine proteinase cathepsin F [Glossin 0.656 0.142 0.478 2e-08
432880227 473 PREDICTED: cathepsin F-like [Oryzias lat 0.735 0.158 0.373 2e-08
>gi|242014216|ref|XP_002427787.1| Cathepsin F precursor, putative [Pediculus humanus corporis] gi|212512256|gb|EEB15049.1| Cathepsin F precursor, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 50/80 (62%)

Query: 18  KSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTAT 77
           K +NE+  +N   L+ F+ F+  F+K Y +KEE  KRF +F  N+K I  LNK E GTA 
Sbjct: 118 KIDNEIINKNEYLLQSFKDFVLKFNKVYFSKEEFKKRFRIFRANMKKINFLNKAEKGTAQ 177

Query: 78  YGINHLSDLTREEMKSRLGL 97
           YGI   SDL+  E K+ LGL
Sbjct: 178 YGITEFSDLSVTEFKNYLGL 197




Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546466|ref|XP_001607324.1| PREDICTED: hypothetical protein LOC100123649 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|348528696|ref|XP_003451852.1| PREDICTED: cathepsin F-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|17543258|ref|NP_502836.1| Protein Y40H7A.10 [Caenorhabditis elegans] gi|3880920|emb|CAA22062.1| Protein Y40H7A.10 [Caenorhabditis elegans] Back     alignment and taxonomy information
>gi|383863617|ref|XP_003707276.1| PREDICTED: uncharacterized protein LOC100880620 [Megachile rotundata] Back     alignment and taxonomy information
>gi|118350314|ref|XP_001008438.1| Papain family cysteine protease containing protein [Tetrahymena thermophila] gi|89290205|gb|EAR88193.1| Papain family cysteine protease containing protein [Tetrahymena thermophila SB210] Back     alignment and taxonomy information
>gi|83944664|gb|ABC48936.1| cathepsin F like protease [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|350421176|ref|XP_003492760.1| PREDICTED: hypothetical protein LOC100745708 [Bombus impatiens] Back     alignment and taxonomy information
>gi|289740839|gb|ADD19167.1| cysteine proteinase cathepsin F [Glossina morsitans morsitans] Back     alignment and taxonomy information
>gi|432880227|ref|XP_004073613.1| PREDICTED: cathepsin F-like [Oryzias latipes] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query102
WB|WBGene00012747 343 Y40H7A.10 [Caenorhabditis eleg 0.784 0.233 0.362 1.8e-10
WB|WBGene00007055 477 tag-196 [Caenorhabditis elegan 0.578 0.123 0.474 2e-08
ZFIN|ZDB-GENE-030131-9831 473 ctsf "cathepsin F" [Danio reri 0.656 0.141 0.373 4.1e-08
FB|FBgn0260462 614 CG12163 [Drosophila melanogast 0.656 0.109 0.434 6e-08
TAIR|locus:2030427 356 XCP2 "xylem cysteine peptidase 0.637 0.182 0.449 8.6e-08
GENEDB_PFALCIPARUM|PF11_0162 492 PF11_0162 "falcipain-3" [Plasm 0.745 0.154 0.376 1.2e-07
UNIPROTKB|Q8IIL0 492 PF11_0162 "Falcipain-3" [Plasm 0.745 0.154 0.376 1.2e-07
UNIPROTKB|E2RR02 460 CTSF "Uncharacterized protein" 0.588 0.130 0.383 2.8e-07
TAIR|locus:2122113 355 XCP1 "xylem cysteine peptidase 0.705 0.202 0.405 4.9e-07
TAIR|locus:2082881 341 AT3G49340 [Arabidopsis thalian 0.627 0.187 0.359 5.9e-07
WB|WBGene00012747 Y40H7A.10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 153 (58.9 bits), Expect = 1.8e-10, P = 1.8e-10
 Identities = 29/80 (36%), Positives = 45/80 (56%)

Query:    16 QMKSNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGT 75
             Q+   + + T + ++   F+ F+  + + YP + E+ KRF +F  NL L+E  NK + G 
Sbjct:    33 QILQRHHIPTPDVKYTNAFQNFLVKYLREYPNEYEIVKRFTIFSRNLDLVERYNKEDAGK 92

Query:    76 ATYGINHLSDLTREEMKSRL 95
              TY +N  SDLT EE K  L
Sbjct:    93 VTYELNDFSDLTEEEWKKYL 112




GO:0006508 "proteolysis" evidence=IEA
GO:0008234 "cysteine-type peptidase activity" evidence=IEA
WB|WBGene00007055 tag-196 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9831 ctsf "cathepsin F" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0260462 CG12163 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2030427 XCP2 "xylem cysteine peptidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0162 PF11_0162 "falcipain-3" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIL0 PF11_0162 "Falcipain-3" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR02 CTSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
TAIR|locus:2122113 XCP1 "xylem cysteine peptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082881 AT3G49340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
smart0084857 smart00848, Inhibitor_I29, Cathepsin propeptide in 5e-16
pfam0824658 pfam08246, Inhibitor_I29, Cathepsin propeptide inh 5e-15
PTZ00021 489 PTZ00021, PTZ00021, falcipain-2; Provisional 3e-08
PTZ00203 348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 3e-06
PTZ00200 448 PTZ00200, PTZ00200, cysteine proteinase; Provision 1e-05
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
 Score = 65.3 bits (160), Expect = 5e-16
 Identities = 27/57 (47%), Positives = 39/57 (68%)

Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREE 90
          FE++ +   KSY ++EE A+RFA+F++NLK IE+ NK    +   G+N  SDLT EE
Sbjct: 1  FEQWKKKHGKSYSSEEEEARRFAIFKENLKKIEEHNKKYEHSYKLGVNQFSDLTPEE 57


This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Length = 57

>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 102
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 99.87
PTZ00203 348 cathepsin L protease; Provisional 99.8
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 99.79
PTZ00021 489 falcipain-2; Provisional 99.71
PTZ00200 448 cysteine proteinase; Provisional 99.7
KOG1542|consensus 372 99.56
KOG1543|consensus 325 98.8
PF0812741 Propeptide_C1: Peptidase family C1 propeptide; Int 96.41
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
Probab=99.87  E-value=6.3e-22  Score=115.30  Aligned_cols=58  Identities=45%  Similarity=0.782  Sum_probs=51.6

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeecccCCCCCHHHH
Q psy18108         34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEM   91 (102)
Q Consensus        34 f~~f~~~y~K~Y~~~~e~~~R~~~F~~N~~~I~~hN~~~~~s~~lglN~faD~T~eEf   91 (102)
                      |++|+++|+|.|.+.+|...|+.+|++|++.|.+||..+..+|++|+|+|||||++||
T Consensus         1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf   58 (58)
T PF08246_consen    1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF   58 (58)
T ss_dssp             HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred             CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence            7899999999999999999999999999999999997777789999999999999997



In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>KOG1542|consensus Back     alignment and domain information
>KOG1543|consensus Back     alignment and domain information
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
3f75_P106 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 2e-05
3tnx_A 363 Structure Of The Precursor Of A Thermostable Varian 4e-05
1xkg_A 312 Crystal Structure Of The Major House Dust Mite Alle 3e-04
2l95_A80 Solution Structure Of Cytotoxic T-Lymphocyte Antige 6e-04
>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 106 Back     alignment and structure

Iteration: 1

Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 34 FEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKS 93 F F ++KSY T+EE +R+A+F++NL I N+ + + + +NH DL+R+E + Sbjct: 25 FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGY-SYSLKMNHFGDLSRDEFRR 83 Query: 94 R-LGLNLSK 101 + LG S+ Sbjct: 84 KYLGFKKSR 92
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363 Back     alignment and structure
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312 Back     alignment and structure
>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte Antigent-2(Ctla Protein), Crammer At Ph 6.0 Length = 80 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query102
1pci_A 322 Procaricain; zymogen, hydrolase, thiol protease; 3 2e-19
3qj3_A 331 Cathepsin L-like protein; hydrolase, proteinase, l 7e-19
2c0y_A 315 Procathepsin S; proenzyme, proteinase, hydrolase, 3e-18
1by8_A 314 Protein (procathepsin K); hydrolase(sulfhydryl pro 4e-18
3qt4_A 329 Cathepsin-L-like midgut cysteine proteinase; hydro 9e-18
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 3e-17
1xkg_A 312 DER P I, major mite fecal allergen DER P 1; major 3e-17
1cs8_A 316 Human procathepsin L; prosegment, propeptide, inhi 5e-17
2o6x_A 310 Procathepsin L1, secreted cathepsin L 1; hydrolase 7e-17
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 6e-14
3pdf_A 441 Cathepsin C, dipeptidyl peptidase 1; two domains, 1e-10
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 3/85 (3%)

Query: 19  SNNELKTENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATY 78
           S ++L +     ++ F  ++ + +K Y   +E   RF +F+DNL  I++ NK  +     
Sbjct: 8   SQDDLTST-ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSY-WL 65

Query: 79  GINHLSDLTREEMKS-RLGLNLSKH 102
           G+N  +DL+ +E     +G  +   
Sbjct: 66  GLNEFADLSNDEFNEKYVGSLIDAT 90


>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query102
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 99.9
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 99.89
3tnx_A 363 Papain; hydrolase, cytoplasm for recombinant expre 99.82
3qj3_A 331 Cathepsin L-like protein; hydrolase, proteinase, l 99.81
3qt4_A 329 Cathepsin-L-like midgut cysteine proteinase; hydro 99.79
1by8_A 314 Protein (procathepsin K); hydrolase(sulfhydryl pro 99.74
2c0y_A 315 Procathepsin S; proenzyme, proteinase, hydrolase, 99.74
1pci_A 322 Procaricain; zymogen, hydrolase, thiol protease; 3 99.74
1cs8_A 316 Human procathepsin L; prosegment, propeptide, inhi 99.74
2o6x_A 310 Procathepsin L1, secreted cathepsin L 1; hydrolase 99.7
1xkg_A 312 DER P I, major mite fecal allergen DER P 1; major 99.47
3pdf_A 441 Cathepsin C, dipeptidyl peptidase 1; two domains, 98.71
3hhi_A 325 Cathepsin B-like cysteine protease; occluding loop 98.19
3pbh_A 317 Procathepsin B; thiol protease, cysteine protease, 97.32
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
Probab=99.90  E-value=1.8e-23  Score=134.78  Aligned_cols=75  Identities=31%  Similarity=0.548  Sum_probs=66.1

Q ss_pred             CCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCcceeeecccCCCCCHHHHHHhh-CCCCC
Q psy18108         25 TENPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREEMKSRL-GLNLS  100 (102)
Q Consensus        25 ~~~~~~~~~f~~f~~~y~K~Y~~~~e~~~R~~~F~~N~~~I~~hN~~~~~s~~lglN~faD~T~eEf~~~~-g~~~~  100 (102)
                      .++.++...|++|+.+|+|.|.+.+|+..|+.+|++|+++|++||+. ..+|++|+|+|||||++||++++ |++.+
T Consensus        16 ~~~~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~-~~sy~lglN~FaDLT~eEF~~~~lg~~~~   91 (106)
T 3f75_P           16 WKEAHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQ-GYSYSLKMNHFGDLSRDEFRRKYLGFKKS   91 (106)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTS-CCSEEECCCTTTTCCHHHHHHHSCCBCC-
T ss_pred             cCcHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeeCCcccccCCHHHHHHHHcCCCCC
Confidence            34456888999999999999999889999999999999999999998 55899999999999999999976 45543



>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 102
d1xkga1 302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 6e-17
d1cs8a_ 316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 5e-15
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]
 Score = 71.6 bits (174), Expect = 6e-17
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 31  LKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKGEHGTATYGINHLSDLTREE 90
           +K FE++ + F+KSY T E+       F +++K ++             INHLSDL+ +E
Sbjct: 2   IKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGG--------AINHLSDLSLDE 53

Query: 91  MKSRLGLNLSKH 102
            K+R  ++    
Sbjct: 54  FKNRFLMSAEAF 65


>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query102
d1cs8a_ 316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 99.77
d1xkga1 302 Major mite fecal allergen der p 1 {House-dust mite 99.57
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77  E-value=5.2e-19  Score=129.09  Aligned_cols=72  Identities=26%  Similarity=0.306  Sum_probs=63.6

Q ss_pred             ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhcC---CCcceeeecccCCCCCHHHHHHhhCCCC
Q psy18108         27 NPEHLKQFEKFIRDFSKSYPTKEEVAKRFAVFEDNLKLIEDLNKG---EHGTATYGINHLSDLTREEMKSRLGLNL   99 (102)
Q Consensus        27 ~~~~~~~f~~f~~~y~K~Y~~~~e~~~R~~~F~~N~~~I~~hN~~---~~~s~~lglN~faD~T~eEf~~~~g~~~   99 (102)
                      +++++..|++|+++|+|.|.+. |+.+|+.+|.+|++.|++||++   +..+|++|+|+|+|||++||.++++...
T Consensus         5 ~~~l~~~F~~f~~~~~K~Y~~~-ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~   79 (316)
T d1cs8a_           5 DHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ   79 (316)
T ss_dssp             CGGGHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBC
T ss_pred             cHHHHHHHHHHHHHhCCcCCCH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhcccc
Confidence            4457889999999999999875 6678999999999999999974   5668999999999999999999987544



>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure