Psyllid ID: psy18109

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600--
MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNIAP
cccccccHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEcccccccccEEEcccHHHHHHHHHHcccHHHHHHHHHccEEEcccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccccccccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHHHHHHHcccccccEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccEEEEEccEEEEEccccccccccHHHHHHHHHHHHcccHHHHHcccccccccccHHHHHHHHHHHccccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccccccccccccccHHHHHHHHHHHHHHHcccccccEEcccccEEcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHcccccEEEEEcEEEEHHHHHHHHHHHHHcccccccccc
cccccccHHHHHHHccccccccccEEccccEEEEEccccccEEEEEcccccHHHHHHHHHHHHEEcccHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcEEEcccccEEEccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccEEEEEccccccccHHHHHEHccHHHHHHHHHHHHEEEEHHHHHccccEEEEEEccccHHHHHHHHHcccHHHHHHcHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEEcccEEEccHHHHHcccccHcHHHHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHccccEEEEEEEcHHHHHHHHHHHHHHHccccccEcHHHHHHHccccHHHccccccccccHHHHHHHHHHHHccccccccEEcccEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHHcccccccEcccc
mfvsacplndlKLLKLQRNLENYSFLKSSVVhnhissspmfspatsphlddkaCFLRTRKACealgftpdEILDIFKVVASVLKLGnvvfipsnnidgtegctvsndyelYEVCDLLSMDCTILQGaitsrslfiddphedcgsTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRtnkavkvkpsgkrkvlgILDIygfeaydgkcgssngFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILslldeessdEAFLLKLGsysssltpergrggvrtpgvlstpssaggdnslppfcfRLRHYAGTVLYNVRGFVEKNGELLHRDVSLamytsqhpllkhlfpeetrvpeaqptrfrisilgsstLKYSILKvcpnivdrpsmdeiklccrgsvdvsvFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLStssmlildhrtlqikyrvpaseiyrlslspylddiavfhirapspsscsdasssflggggggthhhhhqmgclfhsevhgkgdfvfqTGHVIEIVTKLFLVIQNavgkppevniap
mfvsacplndlKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVvfipsnnidgtegCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYivnrtnkavkvkpsgkrkvlGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGsysssltpergrggvrtpgvlstpssaggdnsLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRIsilgsstlkysILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKvwrgyhqrkdflkrkRSQIIIasawrswrfVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQnavgkppevniap
MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLreeqeeyrrenieWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRapspsscsdasssFLggggggthhhhhQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNIAP
****ACPLNDLKLLKLQRNLENYSFLKSSVVHNH**************LDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLD******AFLLK***********************************PPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIR******************************CLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAV**********
MFV*A**LNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVR*************DNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLF*******************GSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKP*******
MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRA***********SFLG**********HQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNIAP
*FVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIP*************NDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNI**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEESSDEAFLLKLGSYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEETRVPEAQPTRFRISILGSSTLKYSILKVCPNIVDRPSMDEIKLCCRGSVDVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRSQIIIASAWRSWRFVPILFVLSTSSMLILDHRTLQIKYRVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKGDFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNIAP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query602 2.2.26 [Sep-21-2011]
Q05096 1136 Unconventional myosin-Ib yes N/A 0.601 0.318 0.385 8e-78
O43795 1136 Unconventional myosin-Ib yes N/A 0.601 0.318 0.385 8e-78
P46735 1107 Unconventional myosin-Ib yes N/A 0.596 0.324 0.385 2e-77
P47807 1045 Unconventional myosin-Ia no N/A 0.601 0.346 0.390 1e-73
P10568 1043 Unconventional myosin-Ia no N/A 0.696 0.401 0.353 9e-69
O88329 1043 Unconventional myosin-Ia no N/A 0.576 0.332 0.369 6e-68
Q62774842 Unconventional myosin-Ia no N/A 0.554 0.396 0.384 4e-67
Q9UBC5 1043 Unconventional myosin-Ia no N/A 0.538 0.310 0.374 5e-66
Q17R14 1006 Unconventional myosin-Id no N/A 0.607 0.363 0.336 6e-57
Q63357 1006 Unconventional myosin-Id no N/A 0.614 0.367 0.325 1e-56
>sp|Q05096|MYO1B_RAT Unconventional myosin-Ib OS=Rattus norvegicus GN=Myo1b PE=2 SV=1 Back     alignment and function desciption
 Score =  291 bits (746), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 158/410 (38%), Positives = 242/410 (59%), Gaps = 48/410 (11%)

Query: 11  LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
           L  LKL+R+   Y++L                 A    +DD A F   R A + +GF+  
Sbjct: 220 LHKLKLERDFSRYNYLS-------------LDSAKVNGVDDAANFRTVRNAMQIVGFSDP 266

Query: 71  EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
           E   + +VVA+VLKLGN+ F P + ++G +   + +  EL E+C+L S+D  +L+ A + 
Sbjct: 267 EAESVLEVVAAVLKLGNIEFKPESRMNGLDESKIKDKNELKEICELTSIDQVVLERAFSF 326

Query: 131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
           R++       +     + T L+  +A   R++L K LYSRLF+++VNR N+++K +   +
Sbjct: 327 RTV-------EAKQEKVSTTLNVAQAYYARDALAKNLYSRLFSWLVNRINESIKAQTKVR 379

Query: 191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENIEW 250
           +KV+G+LDIYGFE ++      N FEQFIIN+CNEKL Q+F ++ L+EEQEEY RE+IEW
Sbjct: 380 KKVMGVLDIYGFEIFE-----DNSFEQFIINYCNEKLQQIFIELTLKEEQEEYIREDIEW 434

Query: 251 CYVEFFNNSAICDIIETNSHGILSLLDEES------SDEAFLLKLGSYSSSLTPERGRGG 304
            ++++FNN+ ICD+IE N++GIL++LDEE       +DE FL KL    ++      R  
Sbjct: 435 THIDYFNNAIICDLIENNTNGILAMLDEECLRPGTVTDETFLEKLNQVCATHQHFESR-- 492

Query: 305 VRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQ 364
                 +S  S    D +LP  CFR++HYAG VLY V GFV+KN +LL+RD+S AM+ + 
Sbjct: 493 ------MSKCSRFLNDTTLPHSCFRIQHYAGKVLYQVEGFVDKNNDLLYRDLSQAMWKAG 546

Query: 365 HPLLKHLFPE------ETRVPEAQPTRFRISILGSSTLKYSILKVCPNIV 408
           H L+K LFPE        + P    ++F+ S+   +TL  ++    PN +
Sbjct: 547 HALIKSLFPEGNPAKVNLKRPPTAGSQFKASV---ATLMKNLQTKNPNYI 593
Motor protein that may participate in process critical to neuronal development and function such as cell migration, neurite outgrowth and vesicular transport.
Rattus norvegicus (taxid: 10116)
>sp|O43795|MYO1B_HUMAN Unconventional myosin-Ib OS=Homo sapiens GN=MYO1B PE=1 SV=3 Back     alignment and function description
>sp|P46735|MYO1B_MOUSE Unconventional myosin-Ib OS=Mus musculus GN=Myo1b PE=2 SV=3 Back     alignment and function description
>sp|P47807|MYO1A_CHICK Unconventional myosin-Ia OS=Gallus gallus GN=MYO1A PE=1 SV=2 Back     alignment and function description
>sp|P10568|MYO1A_BOVIN Unconventional myosin-Ia OS=Bos taurus GN=MYO1A PE=2 SV=1 Back     alignment and function description
>sp|O88329|MYO1A_MOUSE Unconventional myosin-Ia OS=Mus musculus GN=Myo1a PE=2 SV=2 Back     alignment and function description
>sp|Q62774|MYO1A_RAT Unconventional myosin-Ia (Fragment) OS=Rattus norvegicus GN=Myo1a PE=2 SV=1 Back     alignment and function description
>sp|Q9UBC5|MYO1A_HUMAN Unconventional myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1 Back     alignment and function description
>sp|Q17R14|MYO1D_BOVIN Unconventional myosin-Id OS=Bos taurus GN=MYO1D PE=2 SV=1 Back     alignment and function description
>sp|Q63357|MYO1D_RAT Unconventional myosin-Id OS=Rattus norvegicus GN=Myo1d PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
241618557 1096 myosin IA, putative [Ixodes scapularis] 0.634 0.348 0.443 2e-93
242006356 1031 myosin Ib, putative [Pediculus humanus c 0.624 0.364 0.444 2e-87
270002310 1011 hypothetical protein TcasGA2_TC001321 [T 0.699 0.416 0.393 3e-86
189234926 1040 PREDICTED: similar to unconventional myo 0.684 0.396 0.400 4e-86
443698023 1057 hypothetical protein CAPTEDRAFT_166394 [ 0.599 0.341 0.426 2e-80
33284890 1081 novel protein similar to rodent myosin I 0.601 0.334 0.409 3e-79
326670572 1136 PREDICTED: myosin-Ib isoform 2 [Danio re 0.601 0.318 0.409 3e-79
326670574 1078 PREDICTED: myosin-Ib isoform 1 [Danio re 0.601 0.335 0.409 4e-79
348511691 1137 PREDICTED: myosin-Ib isoform 1 [Oreochro 0.617 0.327 0.388 7e-77
348511695 1050 PREDICTED: myosin-Ib isoform 3 [Oreochro 0.617 0.354 0.388 1e-76
>gi|241618557|ref|XP_002408349.1| myosin IA, putative [Ixodes scapularis] gi|215502978|gb|EEC12472.1| myosin IA, putative [Ixodes scapularis] Back     alignment and taxonomy information
 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 193/435 (44%), Positives = 274/435 (62%), Gaps = 53/435 (12%)

Query: 2   FVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKA 61
            +S   ++ LK LKLQRN++NY+ LK S              + + ++DDK+ F  T+++
Sbjct: 213 LLSGADIHLLKSLKLQRNIDNYAILKHS------------KGSQAENIDDKSYFGLTKRS 260

Query: 62  CEALGFTPDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDC 121
            EALG  PDEI   F+VVASVLK+GN+ F P  NID TEGC++ N+YE+Y++C+LL +D 
Sbjct: 261 MEALGMGPDEIHAAFQVVASVLKMGNLQFQPRANIDDTEGCSLLNEYEVYDICELLRVDF 320

Query: 122 TILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNK 181
             L  A+T +   +D  HE     +++T+LSA EAT ++N+LCKALYSRLFT++V+R N 
Sbjct: 321 ASLHSALTQK--MVDARHE-----VVITDLSAMEATYSKNALCKALYSRLFTWLVSRIND 373

Query: 182 AVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQE 241
           +++ K  GKR+ LG+LDIYGFE  +  C     FEQF+IN+CNEKL QLF  + L++EQE
Sbjct: 374 SIRAKRVGKRRCLGVLDIYGFEVLEKNC-----FEQFVINYCNEKLQQLFIVLTLKQEQE 428

Query: 242 EYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES------SDEAFLLKLGSYSSS 295
           EY  E I+W ++++FNN+ ICD+IE N+HGIL++LDEE       SD+ FL KL      
Sbjct: 429 EYIHEGIQWEHIDYFNNAIICDLIEKNNHGILAMLDEECLRPEPVSDDTFLYKLTKVCQE 488

Query: 296 LTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRD 355
            +P     G +         +   D SLP  CFRLRHYAG V Y+V GF++KN + L+RD
Sbjct: 489 -SPYFESKGCK---------NFMADASLPSQCFRLRHYAGAVTYSVAGFIDKNNDHLYRD 538

Query: 356 VSLAMYTSQHPLLKHLFPEET------RVPEAQPTRFRISI------LGSSTLKYSILKV 403
           +S AMY+  HPL+K LFPE        + P    T+F+ISI      L + T  Y +  +
Sbjct: 539 LSQAMYSCDHPLMKILFPEGNPKRTTLKRPTTTATQFKISIGALVKNLQAKTPNY-VRCI 597

Query: 404 CPNIVDRPSMDEIKL 418
            PN + +P + E+ L
Sbjct: 598 KPNELKQPMIFEMAL 612

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|242006356|ref|XP_002424017.1| myosin Ib, putative [Pediculus humanus corporis] gi|212507309|gb|EEB11279.1| myosin Ib, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|270002310|gb|EEZ98757.1| hypothetical protein TcasGA2_TC001321 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|189234926|ref|XP_971077.2| PREDICTED: similar to unconventional myosin 95e [Tribolium castaneum] Back     alignment and taxonomy information
>gi|443698023|gb|ELT98223.1| hypothetical protein CAPTEDRAFT_166394 [Capitella teleta] Back     alignment and taxonomy information
>gi|33284890|emb|CAE17597.1| novel protein similar to rodent myosin Ib (MYO1B) [Danio rerio] Back     alignment and taxonomy information
>gi|326670572|ref|XP_003199241.1| PREDICTED: myosin-Ib isoform 2 [Danio rerio] Back     alignment and taxonomy information
>gi|326670574|ref|XP_001920959.3| PREDICTED: myosin-Ib isoform 1 [Danio rerio] Back     alignment and taxonomy information
>gi|348511691|ref|XP_003443377.1| PREDICTED: myosin-Ib isoform 1 [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|348511695|ref|XP_003443379.1| PREDICTED: myosin-Ib isoform 3 [Oreochromis niloticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query602
FB|FBgn0039157 1288 Myo95E "Myosin 95E" [Drosophil 0.415 0.194 0.395 5.5e-91
UNIPROTKB|G1T0J3 1136 MYO1B "Uncharacterized protein 0.559 0.296 0.384 1.8e-83
UNIPROTKB|J9NW77 1107 MYO1B "Uncharacterized protein 0.559 0.304 0.384 2.2e-83
UNIPROTKB|E2RB62 1136 MYO1B "Uncharacterized protein 0.559 0.296 0.384 3.5e-83
RGD|70994 1136 Myo1b "myosin Ib" [Rattus norv 0.559 0.296 0.381 1.4e-82
UNIPROTKB|Q05096 1136 Myo1b "Unconventional myosin-I 0.559 0.296 0.381 1.4e-82
MGI|MGI:107752 1107 Myo1b "myosin IB" [Mus musculu 0.559 0.304 0.381 1.6e-82
UNIPROTKB|E9PDF6 1107 MYO1B "Unconventional myosin-I 0.559 0.304 0.381 1.9e-82
UNIPROTKB|F7GLJ7 1135 LOC694510 "Uncharacterized pro 0.559 0.296 0.381 2.9e-82
UNIPROTKB|O43795 1136 MYO1B "Unconventional myosin-I 0.559 0.296 0.381 3e-82
FB|FBgn0039157 Myo95E "Myosin 95E" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 472 (171.2 bits), Expect = 5.5e-91, Sum P(4) = 5.5e-91
 Identities = 111/281 (39%), Positives = 165/281 (58%)

Query:    11 LKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPD 70
             LK LKL RN+E Y  L++                T+   +D+  F  T+++ + LG + +
Sbjct:   474 LKSLKLYRNVEKYELLRN----------------TTAMEEDRMNFHYTKRSLDVLGLSCE 517

Query:    71 EILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITS 130
             E   IF+V+A VLKLGN +F+P  NIDGTEGC VSN YE+ E   LL+M+  IL   +T 
Sbjct:   518 ESNSIFRVIAVVLKLGNFIFVPITNIDGTEGCQVSNVYEVQETAQLLNMEAQILINCLT- 576

Query:   131 RSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGK 190
             R+   +   ED G      E+ A +A   RN+LC+ LYSRLFT++VN+ N+++K   + +
Sbjct:   577 RANSTNSAQEDVGC-----EMDARQAATNRNTLCRTLYSRLFTWLVNKINESLK--STQR 629

Query:   191 RKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXW 250
              K L +LD YGFEA D      N FEQF IN+  EK+HQ F   +L             W
Sbjct:   630 EKNLALLDFYGFEALD-----HNSFEQFAINYSAEKIHQNFVFHVLRSEQELYIREGLEW 684

Query:   251 CYVEFFNNSAICDIIETNSHGILSLLDEE--SSDEAFLLKL 289
               +++F+N +IC++I+  S+GILSL++E   +S++A LL++
Sbjct:   685 SRIDYFDNESICELIDKPSYGILSLINEPHLNSNDALLLRV 725
GO:0042623 "ATPase activity, coupled" evidence=NAS
GO:0016459 "myosin complex" evidence=IEA;NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
UNIPROTKB|G1T0J3 MYO1B "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|J9NW77 MYO1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RB62 MYO1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|70994 Myo1b "myosin Ib" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q05096 Myo1b "Unconventional myosin-Ib" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107752 Myo1b "myosin IB" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E9PDF6 MYO1B "Unconventional myosin-Ib" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F7GLJ7 LOC694510 "Uncharacterized protein" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|O43795 MYO1B "Unconventional myosin-Ib" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
cd01378674 cd01378, MYSc_type_I, Myosin motor domain, type I 1e-97
smart00242677 smart00242, MYSc, Myosin 3e-95
pfam00063679 pfam00063, Myosin_head, Myosin head (motor domain) 2e-84
cd00124679 cd00124, MYSc, Myosin motor domain 1e-82
cd01377693 cd01377, MYSc_type_II, Myosin motor domain, type I 1e-69
cd01381671 cd01381, MYSc_type_VII, Myosin motor domain, type 2e-67
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 2e-65
cd01380691 cd01380, MYSc_type_V, Myosin motor domain, type V 2e-60
cd01384674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 2e-59
cd01382717 cd01382, MYSc_type_VI, Myosin motor domain, type V 8e-57
cd01383677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 2e-47
cd01385692 cd01385, MYSc_type_IX, Myosin motor domain, type I 7e-47
cd01387677 cd01387, MYSc_type_XV, Myosin motor domain, type X 2e-45
cd01379653 cd01379, MYSc_type_III, Myosin motor domain, type 1e-39
PTZ00014821 PTZ00014, PTZ00014, myosin-A; Provisional 9e-39
pfam06017199 pfam06017, Myosin_TH1, Myosin tail 2e-15
cd01386767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 4e-11
smart0001523 smart00015, IQ, Calmodulin-binding motif 7e-04
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 0.002
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information 
 Score =  311 bits (800), Expect = 1e-97
 Identities = 139/394 (35%), Positives = 206/394 (52%), Gaps = 56/394 (14%)

Query: 9   NDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFT 68
             L+ L LQ+  E Y +L  S  +            T   +DDK  F  T+ A + +GF+
Sbjct: 203 QLLRELGLQKP-EYYYYLNQSQCY------------TVDGIDDKKDFKETQNAMKVIGFS 249

Query: 69  PDEILDIFKVVASVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAI 128
            DE  +IF++VA++L LGNV F  + +        +S+   L     LL +D + L+ A+
Sbjct: 250 EDEQDEIFRIVAAILHLGNVQFAENGD----GAAVISDKDVLDFAAYLLGVDPSELEKAL 305

Query: 129 TSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPS 188
           TSR++   +        +    L+  +A  TR++L KA+YSRLF ++V+R NKA++VK  
Sbjct: 306 TSRTI---ETGGGGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSP 362

Query: 189 GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQEEYRRENI 248
           GK KV+G+LDIYGFE +       N FEQF IN+ NEKL Q+F ++ L+ EQEEY RE I
Sbjct: 363 GKNKVIGVLDIYGFEIFQ-----KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGI 417

Query: 249 EWCYVEFFNNSAICDIIETNSH-GILSLLDE------ESSDEAFLLKLGSYSSSLTPERG 301
           +W  +E+FNN  +CD+IE     GI S+LD+      E +D+ FL KL    SS      
Sbjct: 418 KWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPHSDH 477

Query: 302 RGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMY 361
                                     FR++HYAG V Y+V GF +KN + L +D+   M 
Sbjct: 478 FSSGSD-------------------EFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQ 518

Query: 362 TSQHPLLKHLFPEE-----TRVPEAQPTRFRISI 390
           +S +P L+ LFPE+      + P     + + S 
Sbjct: 519 SSSNPFLRSLFPEKSDADSKKRPTTAGFKIKTSA 552

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|218855 pfam06017, Myosin_TH1, Myosin tail Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information
>gnl|CDD|197470 smart00015, IQ, Calmodulin-binding motif Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 602
KOG0164|consensus1001 100.0
KOG0162|consensus 1106 100.0
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014821 myosin-A; Provisional 100.0
cd01381671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01384674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01378674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01383677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01377693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
cd01387677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01385692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01380691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01382717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
smart00242677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124679 MYSc Myosin motor domain. This catalytic (head) do 100.0
cd01379653 MYSc_type_III Myosin motor domain, type III myosin 100.0
PF00063689 Myosin_head: Myosin head (motor domain); InterPro: 100.0
cd01386767 MYSc_type_XVIII Myosin motor domain, type XVIII my 100.0
KOG0163|consensus 1259 100.0
KOG0161|consensus 1930 100.0
KOG0160|consensus862 100.0
KOG4229|consensus 1062 100.0
PF06017199 Myosin_TH1: Myosin tail; InterPro: IPR010926 These 99.53
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 97.5
smart0001526 IQ Short calmodulin-binding motif containing conse 96.82
PF0061221 IQ: IQ calmodulin-binding motif; InterPro: IPR0000 96.07
smart0001526 IQ Short calmodulin-binding motif containing conse 94.86
KOG0160|consensus862 94.76
KOG0377|consensus 631 92.55
KOG0520|consensus975 89.02
KOG4427|consensus 1096 87.73
>KOG0164|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.9e-144  Score=1157.36  Aligned_cols=524  Identities=36%  Similarity=0.608  Sum_probs=493.7

Q ss_pred             CccCCCCHhhHhhcCCCCCCCCCccccCCCcccccCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q psy18109          1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVA   80 (602)
Q Consensus         1 qLLaGas~~~~~~L~L~~~~~~y~YL~~~~~~~~~~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~ilA   80 (602)
                      |||+|++++++++|+|++++..|+||++|..             .+.+++|+.+|+.+.+||++|||+++|+.+||+|+|
T Consensus       205 QLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg~~-------------~v~sinD~~dfk~V~~Am~vIgFs~eEVe~v~~iiA  271 (1001)
T KOG0164|consen  205 QLLRGGEEQLLRQLGLERNPQSYNYLNQGSA-------------KVSSINDASDFKAVQKAMRVIGFSEEEVESVLSIIA  271 (1001)
T ss_pred             HHHcCCcHHHHHHhccccCcchhhhhhhhhh-------------hhcccccHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8999999999999999999999999999955             889999999999999999999999999999999999


Q ss_pred             HHHhhcceeeEeccCCCCCCceeecChHHHHHHhhhcCCCHHhHhhhhceeeecccCCCCCCCCceEEeeCCHHHHHHHH
Q psy18109         81 SVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTR  160 (602)
Q Consensus        81 aILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~aLt~r~i~~~~~~~~~~~e~i~~~l~~~qA~~~R  160 (602)
                      ||||||||+|...+     +..-+.+...|+.+|+||++.+++|++|||+|++  .+     ++|.+.+++|++||.|+|
T Consensus       272 avLhLGNv~f~~~e-----d~~~~~~~~~l~~~aell~v~~del~~aL~~Rtv--aa-----~~e~v~k~hn~~qA~YaR  339 (1001)
T KOG0164|consen  272 AVLHLGNVEFADNE-----DSSGIVNGAQLKYIAELLSVTGDELERALTSRTV--AA-----GGEIVLKQHNVEQASYAR  339 (1001)
T ss_pred             HHHhccceEEeecC-----cccccchhHHHHHHHHHHcCCHHHHHHHHHHHHH--Hh-----ccchhhccccHHHHHHHH
Confidence            99999999999854     2344666689999999999999999999999999  88     899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCC----CCceeeeeeeccccccccCCCCCCCchhhhhhhhhhhHHHHHHHHHhH
Q psy18109        161 NSLCKALYSRLFTYIVNRTNKAVKVKPS----GKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVML  236 (602)
Q Consensus       161 DaLaK~LY~rLF~wiV~~IN~~l~~~~~----~~~~~IgILDI~GFE~f~~~~~~~NsFEQlcINy~NEkLQq~f~~~~f  236 (602)
                      |||||++|+|||+|||.+||++|.+...    ...++||+|||||||+|+     .|||||||||||||||||+|++.++
T Consensus       340 DAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~-----~NSFEQfcINYCNEKLQQlFIel~L  414 (1001)
T KOG0164|consen  340 DALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQ-----DNSFEQFCINYCNEKLQQLFIELVL  414 (1001)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeec-----CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987632    124899999999999999     9999999999999999999999999


Q ss_pred             HHHHHHHHhccCccccccccChHHHHHHHhcCcccccccccccC------CHHHHHHHHhhccCCCCCCcCCCCCCCCCc
Q psy18109        237 REEQEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES------SDEAFLLKLGSYSSSLTPERGRGGVRTPGV  310 (602)
Q Consensus       237 ~~eqeeY~~EGI~w~~i~~~dN~~~~dLie~~~~GIl~lLDeec------tD~~fl~kl~~~~~~~~~~~~~~~~~~p~~  310 (602)
                      ++|||||++|||+|++|+||||++||||+|.+..||++||||+|      ||.+||++|++.+++|+||.++..      
T Consensus       415 KqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~Hy~sr~~------  488 (1001)
T KOG0164|consen  415 KQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHPHYTSRKL------  488 (1001)
T ss_pred             HhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCCcchhhhc------
Confidence            99999999999999999999999999999999999999999999      999999999999999999998854      


Q ss_pred             cCCCCCCCCCCCCCCCccEEeeccceeeeeechhhhhhccchHHHHHHHHHcCccccccccccCCC-------CCCCCcc
Q psy18109        311 LSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET-------RVPEAQP  383 (602)
Q Consensus       311 ~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~d~~~ll~~S~~~~i~~lf~~~~-------~r~~Tv~  383 (602)
                            ..+|++++..+|+|.||||+|+|+|.||++||+|.|++|+.++|++|+||++++|||+|+       |||+|+|
T Consensus       489 ------~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~Tag  562 (1001)
T KOG0164|consen  489 ------KQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPPTAG  562 (1001)
T ss_pred             ------cccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCCcHH
Confidence                  467899999999999999999999999999999999999999999999999999999987       8999999


Q ss_pred             chhhccccC------CCCceeEEEecccCCCCCCCCcc------------------------------------cccccc
Q psy18109        384 TRFRISILG------SSTLKYSILKVCPNIVDRPSMDE------------------------------------IKLCCR  421 (602)
Q Consensus       384 s~fk~sl~~------~t~phy~IRCIKPN~~k~p~~fd------------------------------------yk~L~~  421 (602)
                      ++||+||..      +++|+| |||||||+.|+|+.||                                    |||+|+
T Consensus       563 t~Fk~Sm~~Lv~nL~sKeP~Y-vRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~  641 (1001)
T KOG0164|consen  563 TLFKNSMAALVKNLASKEPNY-VRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICE  641 (1001)
T ss_pred             HHHHHHHHHHHHHHhhcCCCe-EEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCc
Confidence            999999987      999999 9999999999999999                                    999998


Q ss_pred             C------------Cc------------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18109        422 G------------SV------------------------DVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKRKRS  465 (602)
Q Consensus       422 g------------gv------------------------~~tlf~LE~~R~~~l~~~A~~IQk~~Rg~~aRk~y~k~r~a  465 (602)
                      .            ||                        |+|||.||+.|++++..+++.|||+||||++|.+|++||++
T Consensus       642 ~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~  721 (1001)
T KOG0164|consen  642 STWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKAS  721 (1001)
T ss_pred             ccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1            11                        89999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh--------------------------------------------------------------------
Q psy18109        466 QIIIASAWRSWR--------------------------------------------------------------------  477 (602)
Q Consensus       466 ai~IQ~~~R~~~--------------------------------------------------------------------  477 (602)
                      ++.|+ |||+|+                                                                    
T Consensus       722 ~~ii~-wyR~~K~ks~v~el~~~~rg~k~~r~ygk~~~WP~pP~~Lr~~~~~L~~lf~rwra~~~~~~ipp~~~~qlr~K  800 (1001)
T KOG0164|consen  722 ATIIR-WYRRYKLKSYVQELQRRFRGAKQMRDYGKSIRWPAPPLVLREFEELLRELFIRWRAWQILKSIPPSDKPQLRQK  800 (1001)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhhhhccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            77666 999887                                                                    


Q ss_pred             --------------------------------------------------------------------hhhhHHhhhhhh
Q psy18109        478 --------------------------------------------------------------------FVPILFVLSTSS  489 (602)
Q Consensus       478 --------------------------------------------------------------------~r~r~l~lt~~a  489 (602)
                                                                                          .+.|.+++|+.+
T Consensus       801 i~A~e~lkGkk~~~gqsr~w~gdyL~~~~~~p~~~~~~~~~~~~l~~~e~fg~Vlfs~~V~K~NrfnK~~~R~lllTd~~  880 (1001)
T KOG0164|consen  801 IAASEALKGKKANWGQSRAWIGDYLGSQEENPGYSATFKNRLQQLKGSETFGPVLFSSHVKKVNRFNKPRSRALLLTDRH  880 (1001)
T ss_pred             HHHHHHhcCCcccccccchhhhhhcccCCCCCCcchhhHHHHHHhhccCCccceeehhhHHHhcccCCccceeEEeecCe
Confidence                                                                                677999999999


Q ss_pred             hhhhhhhhhhhhc-eecccceeEEEeccCCCcEEEEEecCCCCCCCCCcCccccCCCCCCCccccCccccccccccccCC
Q psy18109        490 MLILDHRTLQIKY-RVPASEIYRLSLSPYLDDIAVFHIRAPSPSSCSDASSSFLGGGGGGTHHHHHQMGCLFHSEVHGKG  568 (602)
Q Consensus       490 i~ild~~k~~~kr-ri~l~~I~~vs~S~~~D~~~v~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  568 (602)
                      ++++|++|.++++ .||+.+++|||||+++|++||||+.+.+|.                                ..+|
T Consensus       881 v~kld~~K~k~mK~~I~l~nltgiSVss~~D~LfvlH~~~~~Dl--------------------------------v~~~  928 (1001)
T KOG0164|consen  881 VYKLDPKKQKVMKQTIPLANLTGISVSSGSDQLFVLHVSDNKDL--------------------------------VVCL  928 (1001)
T ss_pred             EEEecchHhhHhhcccchhhccceeeecCCCceEEEEecCCcch--------------------------------hhhh
Confidence            9999999966555 799999999999999999999999988787                                4458


Q ss_pred             CcccccCchhHHHHHHHHHHHHHhCCCCccccC
Q psy18109        569 DFVFQTGHVIEIVTKLFLVIQNAVGKPPEVNIA  601 (602)
Q Consensus       569 ~~~~~~~~~~e~~~~l~~~~~~~~~~~~~v~~~  601 (602)
                      |.+++++||||+||+|+.+++++ |+.++|||+
T Consensus       929 ~~~~~e~rVgElvg~l~~~~~~~-~r~l~V~vt  960 (1001)
T KOG0164|consen  929 DSVLQEDRVGELVGKLAAHYNDE-GRSLNVNVT  960 (1001)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhh-cceeeEEec
Confidence            88999999999999999999999 999999985

>KOG0162|consensus Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>PF06017 Myosin_TH1: Myosin tail; InterPro: IPR010926 These proteins share a region of sequence similarity with the tail of myosin (for example O00159 from SWISSPROT) Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K Back     alignment and domain information
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0377|consensus Back     alignment and domain information
>KOG0520|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
1lkx_A697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 1e-45
4a7f_C697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 2e-45
4e7s_A798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 2e-36
3l9i_A814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 3e-36
2bki_A858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 3e-36
2bkh_A814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 4e-36
4dbp_A814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 5e-36
4e7z_A798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 5e-36
2v26_A784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 5e-36
4dbr_A786 Myosin Vi D179y (md) Pre-powerstroke State Length = 5e-36
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 5e-36
2x51_A789 M6 Delta Insert1 Length = 789 8e-36
2vas_A788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 8e-36
4dbq_A788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 8e-36
1w9i_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-32
1w9j_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-32
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 3e-32
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 9e-32
3j04_A909 Em Structure Of The Heavy Meromyosin Subfragment Of 1e-31
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 1e-31
1br1_A820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-31
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 1e-31
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 1e-31
1mmn_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 1e-31
1br2_A791 Smooth Muscle Myosin Motor Domain Complexed With Mg 1e-31
1lvk_A762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 2e-31
1mmg_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-31
1mma_A762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-31
1yv3_A762 The Structural Basis Of Blebbistatin Inhibition And 3e-31
3mnq_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-31
2y9e_X758 Structural Basis For The Allosteric Interference Of 3e-31
1fmv_A761 Crystal Structure Of The Apo Motor Domain Of Dictyo 3e-31
2jhr_A788 Crystal Structure Of Myosin-2 Motor Domain In Compl 3e-31
3myh_X762 Insights Into The Importance Of Hydrogen Bonding In 3e-31
2aka_A776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 3e-31
2y0r_X758 Structural Basis For The Allosteric Interference Of 3e-31
1d0x_A761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 3e-31
1jwy_A776 Crystal Structure Of The Dynamin A Gtpase Domain Co 3e-31
2xel_A776 Molecular Mechanism Of Pentachloropseudilin Mediate 3e-31
1w9l_A770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 3e-31
1w9k_A770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 4e-31
1mmd_A762 Truncated Head Of Myosin From Dictyostelium Discoid 5e-31
2xo8_A776 Crystal Structure Of Myosin-2 In Complex With Tribr 6e-31
1kk7_A837 Scallop Myosin In The Near Rigor Conformation Lengt 8e-31
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 9e-31
1qvi_A840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 9e-31
1b7t_A835 Myosin Digested By Papain Length = 835 9e-31
1dfk_A830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 1e-30
1dfl_A831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 1e-30
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 7e-30
1oe9_A795 Crystal Structure Of Myosin V Motor With Essential 8e-30
1w8j_A766 Crystal Structure Of Myosin V Motor Domain - Nucleo 9e-30
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 4e-29
2os8_A840 Rigor-Like Structures Of Muscle Myosins Reveal Key 7e-28
2ec6_A838 Placopecten Striated Muscle Myosin Ii Length = 838 1e-27
2w4g_M840 Isometrically Contracting Insect Asynchronous Fligh 3e-27
3i5g_A839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 2e-26
4db1_A783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 2e-25
2mys_A843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 4e-23
1m8q_A840 Molecular Models Of Averaged Rigor Crossbridges Fro 4e-23
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 128/403 (31%), Positives = 202/403 (50%), Gaps = 39/403 (9%)
Query: 17  QRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIF 76
           Q  L+      ++  + ++  S  F  +T   +DD   F    KA E LG    +   I+
Sbjct: 211 QSKLDELGLTPNAPAYEYLKKSGCFDVST---IDDSGEFKIIVKAMETLGLKESDQNSIW 267
Query: 77  KVVASVLKLGNVVFI-PSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFI 135
           +++A++L +GN+ F   +    GT    VS+   L      L  D   L  A+  RS+  
Sbjct: 268 RILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKTDQQSLSIALCYRSIST 327
Query: 136 DDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLG 195
               + C  ++I   +   +A  +R++L KALY RLF ++V++ N  +    + K  V+G
Sbjct: 328 G-VGKRC--SVISVPMDCNQAAYSRDALAKALYERLFNWLVSKINTIINC-TTEKGPVIG 383
Query: 196 ILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLXXXXXXXXXXXXXWCYVEF 255
           ILDIYGFE +      +N FEQ  INFCNEKL QLF ++ L             W  +E+
Sbjct: 384 ILDIYGFEVF-----QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEY 438
Query: 256 FNNSAICDIIETNSHGILSLLDE-----ESSDEAFLLKLGSYSSSLTPERGRGGVRTPGV 310
           FNN  IC++IE    G++SLLDE     +S+D+ FL  +            +   + P +
Sbjct: 439 FNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSI-----------CKQFEKNPHL 487
Query: 311 LSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKH 370
            S   S   D S+   CFRL+HYAG V Y+VRGF++KN + L  D+  +M +S  PL++ 
Sbjct: 488 QSYVVSK--DRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFGDLISSMQSSSDPLVQG 545
Query: 371 LFP-----EETRVPEAQPTRFRISILGSSTLKYSILKVCPNIV 408
           LFP     +  + PE   ++FR ++   + L  ++L   P+ V
Sbjct: 546 LFPPTRPEDSKKRPETAGSQFRNAM---NALITTLLACSPHYV 585
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query602
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 1e-111
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 1e-109
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 1e-101
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 1e-100
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 4e-06
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 1e-98
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 3e-10
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-98
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 7e-11
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-97
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 4e-06
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 2e-97
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 1e-07
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-97
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 1e-96
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 1e-11
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 5e-04
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 7e-04
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
 Score =  347 bits (892), Expect = e-111
 Identities = 129/385 (33%), Positives = 183/385 (47%), Gaps = 48/385 (12%)

Query: 1   MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
             +     + L  L L  N   Y +LK S                   +DD   F    K
Sbjct: 204 QMLKGLSQSKLDELGLTPNAPAYEYLKKSGCF------------DVSTIDDSGEFKIIVK 251

Query: 61  ACEALGFTPDEILDIFKVVASVLKLGNVVFIPS-NNIDGTEGCTVSNDYELYEVCDLLSM 119
           A E LG    +   I++++A++L +GN+ F  +     GT    VS+   L      L  
Sbjct: 252 AMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKT 311

Query: 120 DCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRT 179
           D   L  A+  RS  I        S  I   +   +A  +R++L KALY RLF ++V++ 
Sbjct: 312 DQQSLSIALCYRS--ISTGVGKRCSV-ISVPMDCNQAAYSRDALAKALYERLFNWLVSKI 368

Query: 180 NKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREE 239
           N  +      K  V+GILDIYGFE +      +N FEQ  INFCNEKL QLF ++ L+ E
Sbjct: 369 NTIINCTTE-KGPVIGILDIYGFEVFQ-----NNSFEQLNINFCNEKLQQLFIELTLKSE 422

Query: 240 QEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKL----G 290
           QEEY RE IEW  +E+FNN  IC++IE    G++SLLDE       +D+ FL  +     
Sbjct: 423 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQFE 482

Query: 291 SYSSSLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGE 350
                 +    +                 D S+   CFRL+HYAG V Y+VRGF++KN +
Sbjct: 483 KNPHLQSYVVSK-----------------DRSIGDTCFRLKHYAGDVTYDVRGFLDKNKD 525

Query: 351 LLHRDVSLAMYTSQHPLLKHLFPEE 375
            L  D+  +M +S  PL++ LFP  
Sbjct: 526 TLFGDLISSMQSSSDPLVQGLFPPT 550
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Length = 58 Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Length = 64 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
1kk8_A837 Myosin heavy chain, striated muscle; actin-detache 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
1w7j_A795 Myosin VA; motor protein, unconventional myosin, m 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
1lkx_A697 Myosin IE heavy chain; myosin motor domain, lever 100.0
2ycu_A995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
4db1_A783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1w9i_A770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
2v26_A784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 99.04
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 98.85
1wdc_A64 Scallop myosin; calcium binding protein, muscle pr 98.26
2bl0_A63 Major plasmodial myosin heavy chain; muscle protei 98.07
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 97.86
2ix7_C58 Myosin-5A; contractIle protein/metal binding, acti 96.68
1n2d_C48 IQ2 and IQ3 motifs from MYO2P, A class V myosin; p 95.79
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 94.37
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 94.28
2kxw_B27 Sodium channel protein type 2 subunit alpha; actio 88.12
2l53_B31 CAM, voltage-gated sodium channel type V alpha iso 87.17
3gn4_A148 Myosin-VI; unconventional myosin, motility, lever 85.85
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
Probab=100.00  E-value=1.1e-112  Score=985.15  Aligned_cols=439  Identities=28%  Similarity=0.455  Sum_probs=394.2

Q ss_pred             CccCCCCHhhHhhcCCCCCCCCCccccCCCcccccCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q psy18109          1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVA   80 (602)
Q Consensus         1 qLLaGas~~~~~~L~L~~~~~~y~YL~~~~~~~~~~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~ilA   80 (602)
                      |||+|++++++++|+|+.++++|+||+++..             .++++||+++|++|++||++|||+++|+.+||+|||
T Consensus       287 qLlaG~~~~~~~~l~L~~~~~~y~yL~~g~~-------------~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~i~~ilA  353 (837)
T 1kk8_A          287 QICSNAIPELNDVMLVTPDSGLYSFINQGCL-------------TVDNIDDVEEFKLCDEAFDILGFTKEEKQSMFKCTA  353 (837)
T ss_dssp             HHTSCSSGGGHHHHTCCSCGGGCTTTCSSCS-------------CBTTBCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHhCCCCChhhcccccCCCc-------------ccCCcChHHHHHHHHHHHHhcCcCHHHHHHHHHHHH
Confidence            7999999999999999878999999999875             789999999999999999999999999999999999


Q ss_pred             HHHhhcceeeEeccCCCCCCceeecChHHHHHHhhhcCCCHHhHhhhhceeeecccCCCCCCCCceEEeeCCHHHHHHHH
Q psy18109         81 SVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTR  160 (602)
Q Consensus        81 aILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~aLt~r~i~~~~~~~~~~~e~i~~~l~~~qA~~~R  160 (602)
                      ||||||||+|.+..+   .+.+.+.+.+.++.+|+||||++++|.++||+|++  .+     ++|.++++++++||.++|
T Consensus       354 aILhLGNi~F~~~~~---~~~~~~~~~~~l~~~a~LLgv~~~~L~~aL~~~~~--~~-----~~e~v~~~~~~~qA~~~r  423 (837)
T 1kk8_A          354 SILHMGEMKFKQRPR---EEQAESDGTAEAEKVAFLCGINAGDLLKALLKPKV--KV-----GTEMVTKGQNMNQVVNSV  423 (837)
T ss_dssp             HHHHHTTCCEEC-------CCCEESCSHHHHHHHHHHTSCHHHHHHHHHSCEE--C---------CEECCCCHHHHHHHH
T ss_pred             HHHhhccceEEecCC---CCccccCCHHHHHHHHHHHCCCHHHHHHHhcCcEE--Ec-----CCceEEeCCCHHHHHHHH
Confidence            999999999987532   35678999999999999999999999999999999  88     899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCCCceeeeeeeccccccccCCCCCCCchhhhhhhhhhhHHHHHHHHHhHHHHH
Q psy18109        161 NSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ  240 (602)
Q Consensus       161 DaLaK~LY~rLF~wiV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~~~~~~NsFEQlcINy~NEkLQq~f~~~~f~~eq  240 (602)
                      |||||+||+|||+|||++||++|..+ .....+||||||||||+|+     .|||||||||||||||||+|++++|+.||
T Consensus       424 dalaK~lY~rLF~wlV~~IN~~l~~~-~~~~~~IGvLDI~GFE~f~-----~NsFEQlcINyaNEkLQq~Fn~~~f~~Eq  497 (837)
T 1kk8_A          424 GALAKSLYDRMFNWLVRRVNKTLDTK-AKRNYYIGVLDIAGFEIFD-----FNSFEQLCINYTNERLQQFFNHHMFILEQ  497 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCS-----SBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCC-CCCcceEEEEecCCccccc-----cccHHHHHHHHhhHHHHHHHHHhhhHHHH
Confidence            99999999999999999999999843 3345899999999999999     99999999999999999999999999999


Q ss_pred             HHHHhccCccccccc-cChHHHHHHHhcCcccccccccccC-----CHHHHHHHH-hhccCCCCCCcCCCCCCCCCccCC
Q psy18109        241 EEYRRENIEWCYVEF-FNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKL-GSYSSSLTPERGRGGVRTPGVLST  313 (602)
Q Consensus       241 eeY~~EGI~w~~i~~-~dN~~~~dLie~~~~GIl~lLDeec-----tD~~fl~kl-~~~~~~~~~~~~~~~~~~p~~~~~  313 (602)
                      +||++|||+|++|+| .||++|+||||+ |.|||+||||||     ||.+|++|| ++++++|++|.+++.         
T Consensus       498 eeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~tD~tf~~kl~~~~~~~~~~f~~p~~---------  567 (837)
T 1kk8_A          498 EEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKADDKSFQDKLYQNHMGKNRMFTKPGK---------  567 (837)
T ss_dssp             HHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTCCHHHHHHHHHHHHTTTCSSEECCCS---------
T ss_pred             HHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCCChHHHHHHHHHHhcCCCcCccCCCc---------
Confidence            999999999999999 599999999998 899999999999     999999996 567899999987642         


Q ss_pred             CCCCCCCCCCCCCccEEeeccceeeeeechhhhhhccchHHHHHHHHHcCccccccccccCCC---------C----CCC
Q psy18109        314 PSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET---------R----VPE  380 (602)
Q Consensus       314 ~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~d~~~ll~~S~~~~i~~lf~~~~---------~----r~~  380 (602)
                         . ..+......|+|+||||+|+|+++||+|||+|+|++|++++|++|++++|+.||+...         +    +++
T Consensus       568 ---~-~~k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~~~~v~~Lf~~~~~~~g~~~~~k~~~~~~~  643 (837)
T 1kk8_A          568 ---P-TRPNQGPAHFELHHYAGNVPYSITGWLEKNKDPINENVVALLGASKEPLVAELFKAPEEPAGGGKKKKGKSSAFQ  643 (837)
T ss_dssp             ---C-SSTTCCCCSEEEEETTEEEEECCSSHHHHHSCCCCHHHHHHHHTCSSHHHHHHTCC------------------C
T ss_pred             ---c-ccccccCCceEEeeccCcccccHHHHHHhccccccHHHHHHHHhchHHHHHHHhcccccccCCCCCCCCCCCCCC
Confidence               0 0012246789999999999999999999999999999999999999999999997521         1    267


Q ss_pred             CccchhhccccC------CCCceeEEEecccCCCCCCCCcc------------------------------------ccc
Q psy18109        381 AQPTRFRISILG------SSTLKYSILKVCPNIVDRPSMDE------------------------------------IKL  418 (602)
Q Consensus       381 Tv~s~fk~sl~~------~t~phy~IRCIKPN~~k~p~~fd------------------------------------yk~  418 (602)
                      ||+++||.||..      +|+||| |||||||+.|.|+.||                                    |++
T Consensus       644 Tv~~~fk~sL~~Lm~~L~~t~phf-VRCIkPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~f~eF~~RY~~  722 (837)
T 1kk8_A          644 TISAVHRESLNKLMKNLYSTHPHF-VRCIIPNELKQPGLVDAELVLHQLQCNGVLEGIRICRKGFPSRLIYSEFKQRYSI  722 (837)
T ss_dssp             CHHHHHHHHHHHHHHHHTTEEEEE-EEEECCCSSCCTTCCCHHHHHHHHTTSSSCC-----CCCSCEEEEHHHHHHHHGG
T ss_pred             chHHHHHHHHHHHHHHHHccCCee-eeeeCCCccCCcccccchheeeeccccCccHHHHHHHHhccccccHHHHHHHHHH
Confidence            999999999987      999999 9999999999999999                                    788


Q ss_pred             cccC-----------------------------Cc------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy18109        419 CCRG-----------------------------SV------DVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFLKR-  462 (602)
Q Consensus       419 L~~g-----------------------------gv------~~tlf~LE~~R~~~l~~~A~~IQk~~Rg~~aRk~y~k~-  462 (602)
                      |++.                             |.      ..+++.||++|++++..+|+.||++||||++|++|++| 
T Consensus       723 L~~~~~~~~~~d~k~~~~~ll~~~~~~~~~~~~G~TKVF~r~~~~~~LE~~r~~~l~~~~~~iQa~~Rg~l~R~~~~k~~  802 (837)
T 1kk8_A          723 LAPNAIPQGFVDGKTVSEKILAGLQMDPAEYRLGTTKVFFKAGVLGNLEEMRDERLSKIISMFQAHIRGYLIRKAYKKLQ  802 (837)
T ss_dssp             GSGGGCCC---CHHHHHHHHHHHHTCCGGGEEECSSEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccCCCCHHHHHHHHHHHcCCCccceeecCEEEEehhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            8752                             11      12377899999999999999999999999999999999 


Q ss_pred             --HHHHHHHHHHHHhhhhhhhHH
Q psy18109        463 --KRSQIIIASAWRSWRFVPILF  483 (602)
Q Consensus       463 --r~aai~IQ~~~R~~~~r~r~l  483 (602)
                        |.|+++||++||+|..|+.|.
T Consensus       803 ~~r~a~~~IQ~~~R~~~~~r~~~  825 (837)
T 1kk8_A          803 DQRIGLSVIQRNIRKWLVLRNWQ  825 (837)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHcchH
Confidence              678899999999999888653
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A Back     alignment and structure
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus} Back     alignment and structure
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus} Back     alignment and structure
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens} Back     alignment and structure
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 602
d1lkxa_684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 1e-59
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 3e-57
d1kk8a2789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 2e-10
d1d0xa2712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 7e-57
d1br2a2710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 2e-54
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-54
d1w7ja2730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 2e-07
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 9e-54
d2mysa2794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 3e-10
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score =  208 bits (531), Expect = 1e-59
 Identities = 129/380 (33%), Positives = 185/380 (48%), Gaps = 40/380 (10%)

Query: 1   MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRK 60
             +     + L  L L  N   Y +LK S                   +DD   F    K
Sbjct: 196 QMLKGLSQSKLDELGLTPNAPAYEYLKKS------------GCFDVSTIDDSGEFKIIVK 243

Query: 61  ACEALGFTPDEILDIFKVVASVLKLGNVVFIPS-NNIDGTEGCTVSNDYELYEVCDLLSM 119
           A E LG    +   I++++A++L +GN+ F  +     GT    VS+   L      L  
Sbjct: 244 AMETLGLKESDQNSIWRILAAILHIGNITFAEAAEQRTGTTTVKVSDTKSLAAAASCLKT 303

Query: 120 DCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTRNSLCKALYSRLFTYIVNRT 179
           D   L  A+  RS+           ++I   +   +A  +R++L KALY RLF ++V++ 
Sbjct: 304 DQQSLSIALCYRSI---STGVGKRCSVISVPMDCNQAAYSRDALAKALYERLFNWLVSKI 360

Query: 180 NKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREE 239
           N  +      K  V+GILDIYGFE +       N FEQ  INFCNEKL QLF ++ L+ E
Sbjct: 361 NTIINCTTE-KGPVIGILDIYGFEVFQN-----NSFEQLNINFCNEKLQQLFIELTLKSE 414

Query: 240 QEEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEE-----SSDEAFLLKLGSYSS 294
           QEEY RE IEW  +E+FNN  IC++IE    G++SLLDE      S+D+ FL  +     
Sbjct: 415 QEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKSTDQTFLDSICKQ-- 472

Query: 295 SLTPERGRGGVRTPGVLSTPSSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHR 354
                           L +   +  D S+   CFRL+HYAG V Y+VRGF++KN + L  
Sbjct: 473 ----------FEKNPHLQSYVVS-KDRSIGDTCFRLKHYAGDVTYDVRGFLDKNKDTLFG 521

Query: 355 DVSLAMYTSQHPLLKHLFPE 374
           D+  +M +S  PL++ LFP 
Sbjct: 522 DLISSMQSSSDPLVQGLFPP 541
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query602
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1kk8a2789 Myosin S1, motor domain {Bay scallop (Aequipecten 100.0
d1w7ja2730 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d1d0xa2712 Myosin S1, motor domain {Dictyostelium discoideum 100.0
d1lkxa_684 Myosin S1, motor domain {Dictyostelium discoideum, 100.0
d1br2a2710 Myosin S1, motor domain {Chicken (Gallus gallus), 100.0
d2mysa2794 Myosin S1, motor domain {Chicken (Gallus gallus), 80.13
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=4.4e-103  Score=905.29  Aligned_cols=439  Identities=28%  Similarity=0.406  Sum_probs=396.9

Q ss_pred             CccCCCCHhhHhhcCCCCCCCCCccccCCCcccccCCCCCCCCCCCCCcchHHHHHHHHHHHHHcCCCchhhHHHHHHHH
Q psy18109          1 MFVSACPLNDLKLLKLQRNLENYSFLKSSVVHNHISSSPMFSPATSPHLDDKACFLRTRKACEALGFTPDEILDIFKVVA   80 (602)
Q Consensus         1 qLLaGas~~~~~~L~L~~~~~~y~YL~~~~~~~~~~~~~~~~~~~~~~~dD~~~f~~~~~Am~~lGfs~~e~~~I~~ilA   80 (602)
                      |||+|+++++++.|+|..++.+|+||+++.+             .++++||+++|+.++.||++|||+++|+..||+|||
T Consensus       241 qll~g~~~~~~~~~~l~~~~~~y~yl~~~~~-------------~~~~~~d~~~f~~~~~al~~lg~s~~e~~~i~~ila  307 (794)
T d2mysa2         241 QIMSNKKPELIDMLLITTNPYDYHYVSEGEI-------------TVPSIDDQEELMATDSAIDILGFSADEKTAIYKLTG  307 (794)
T ss_dssp             HHTTCSSHHHHHHHTCCSCGGGCGGGCSSCC-------------CCTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHHHhccCCCHHHhhhcCCCCc-------------ccCCCChHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            6899999999999999778999999999877             788999999999999999999999999999999999


Q ss_pred             HHHhhcceeeEeccCCCCCCceeecChHHHHHHhhhcCCCHHhHhhhhceeeecccCCCCCCCCceEEeeCCHHHHHHHH
Q psy18109         81 SVLKLGNVVFIPSNNIDGTEGCTVSNDYELYEVCDLLSMDCTILQGAITSRSLFIDDPHEDCGSTLIVTELSAGEATVTR  160 (602)
Q Consensus        81 aILhLGNi~F~~~~~~~~~~~~~i~~~~~l~~~a~LLgv~~~~L~~aLt~r~i~~~~~~~~~~~e~i~~~l~~~qA~~~R  160 (602)
                      ||||||||+|.+.+   +.+.+.+.+++.++.+|+||||++++|.++|+++++  .+     ++|.+.+++++++|.++|
T Consensus       308 aILhLGni~f~~~~---~~~~~~~~~~~~~~~~a~LLgi~~~~L~~~L~~~~~--~~-----~~e~i~~~l~~~~a~~~r  377 (794)
T d2mysa2         308 AVMHYGNLKFKQKQ---REEQAEPDGTEVADKAAYLMGLNSAELLKALCYPRV--GV-----GNEAVTKGETVSEVHNSV  377 (794)
T ss_dssp             HHHHHTTCCEEECT---TSCCEEESCSSHHHHHHHHHTCCHHHHHHHHHSCBC--CC-----SSSCCBCCCCHHHHHHHH
T ss_pred             HHhcccceeEeecC---CcccccccchHHHHHHHHHhCCCHHHhhccceeeEE--Ee-----cccceeeeCCHHHHHHHH
Confidence            99999999998854   335688999999999999999999999999999999  77     899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcccccccCCCCCceeeeeeeccccccccCCCCCCCchhhhhhhhhhhHHHHHHHHHhHHHHH
Q psy18109        161 NSLCKALYSRLFTYIVNRTNKAVKVKPSGKRKVLGILDIYGFEAYDGKCGSSNGFEQFIINFCNEKLHQLFTDVMLREEQ  240 (602)
Q Consensus       161 DaLaK~LY~rLF~wiV~~IN~~l~~~~~~~~~~IgILDI~GFE~f~~~~~~~NsFEQlcINy~NEkLQq~f~~~~f~~eq  240 (602)
                      |||||+||+|||+|||.+||.++.+... ...+||||||||||+|+     .|||||||||||||||||+|++++|+.||
T Consensus       378 dalaK~LY~~LF~wiV~~IN~~l~~~~~-~~~~IgILDifGFE~f~-----~NsfEQLcINyaNEkLQq~f~~~~F~~Eq  451 (794)
T d2mysa2         378 GALAKAVYEKMFLWMVIRINQQLDTKQP-RQYFIGVLDIAGFEIFD-----FNSFEQLCINFTNEKLQQFFNHHMFVLEQ  451 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCSSC-CCEEEEEEEEECCCCCS-----SBCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcccCCC-cceEEEEeecccccccc-----cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999986543 35799999999999999     99999999999999999999999999999


Q ss_pred             HHHHhccCccccccccChHHHHHHHhcCcccccccccccC-----CHHHHHHHHhhcc-CCCCCCcCCCCCCCCCccCCC
Q psy18109        241 EEYRRENIEWCYVEFFNNSAICDIIETNSHGILSLLDEES-----SDEAFLLKLGSYS-SSLTPERGRGGVRTPGVLSTP  314 (602)
Q Consensus       241 eeY~~EGI~w~~i~~~dN~~~~dLie~~~~GIl~lLDeec-----tD~~fl~kl~~~~-~~~~~~~~~~~~~~p~~~~~~  314 (602)
                      ++|++|||+|+.|+|.||..+|++++.+|.|||++|||||     ||++|++|++..+ +++++|..+..          
T Consensus       452 ~~Y~~EgI~~~~i~~~~n~~~~~~l~~kp~Gil~lLdee~~~~~~td~~f~~kl~~~~~~~~~~~~~~~~----------  521 (794)
T d2mysa2         452 EEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYDEHLGKSNNFQKPKP----------  521 (794)
T ss_dssp             HHHHHTCCCCCCCCSTHHHHHHHHHHHSTTSHHHHHHHHTTCTTCCHHHHHHHHHHHHBTTBSSEECCCC----------
T ss_pred             HHHHhcCCCcccCCCCCCHHHHHHHHhCcccHHHHHHHhccCccccHHHHHHHHHHHhcCCCccccCCCc----------
Confidence            9999999999999999888888888888999999999999     9999999997654 66777765422          


Q ss_pred             CCCCCCCCCCCCccEEeeccceeeeeechhhhhhccchHHHHHHHHHcCccccccccccCCC----------------CC
Q psy18109        315 SSAGGDNSLPPFCFRLRHYAGTVLYNVRGFVEKNGELLHRDVSLAMYTSQHPLLKHLFPEET----------------RV  378 (602)
Q Consensus       315 ~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~d~~~ll~~S~~~~i~~lf~~~~----------------~r  378 (602)
                           .+...+..|+|+||||+|+|+++||++||+|.+++++.++|++|++++|+.||+...                .+
T Consensus       522 -----~~~~~~~~F~I~HyaG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~  596 (794)
T d2mysa2         522 -----AKGKAEAHFSLVHYAGTVDYNISGWLEKNKDPLNETVIGLYQKSSVKTLALLFATYGGEAEGGGGKKGGKKKGSS  596 (794)
T ss_dssp             -----C---CCCSEEEECSSCEEEECCSSHHHHHHCCCCHHHHHHHHTCSSHHHHHHTSCC-------------------
T ss_pred             -----cCCCCCCceEEEeeCceeeehhcchHHhccCcccHHHHHHHHhCCCHHHHHhhhhcccccccccCCcCCCCCCCc
Confidence                 112245689999999999999999999999999999999999999999999997632                12


Q ss_pred             CCCccchhhccccC------CCCceeEEEecccCCCCCCCCcc------------------------------------c
Q psy18109        379 PEAQPTRFRISILG------SSTLKYSILKVCPNIVDRPSMDE------------------------------------I  416 (602)
Q Consensus       379 ~~Tv~s~fk~sl~~------~t~phy~IRCIKPN~~k~p~~fd------------------------------------y  416 (602)
                      ..||+++||+||..      +|+||| |||||||+.+.|+.||                                    |
T Consensus       597 ~~Tv~~~fr~sL~~L~~~L~~t~~hF-IRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~vri~r~Gyp~R~~~~eF~~RY  675 (794)
T d2mysa2         597 FQTVSALFRENLNKLMANLRSTHPHF-VRCIIPNETKTPGAMEHELVLHQLRCNGVLEGIRICRKGFPSRVLYADFKQRY  675 (794)
T ss_dssp             -CCSHHHHHHHHHHHHHHHHTSEEEE-EEEECCCTTCCTTCCCHHHHHHHHHHHSHHHHHHHHTTSCCCEEEHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCeE-EEeecCCcccCCcccchHHHHHHHHhcCHHHHHHHHhcCCCccccHHHHHHHH
Confidence            36999999999987      999999 9999999999999999                                    8


Q ss_pred             cccccC---------------------Cc---------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18109        417 KLCCRG---------------------SV---------------DVSVFELEEFRRDRLVDLAVLIQKVWRGYHQRKDFL  460 (602)
Q Consensus       417 k~L~~g---------------------gv---------------~~tlf~LE~~R~~~l~~~A~~IQk~~Rg~~aRk~y~  460 (602)
                      ++|++.                     ++               ...+..||++|++++.++|+.||++||||++|++|+
T Consensus       676 ~~L~~~~~~~~~~~d~~~~~~~ll~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~r~~~l~~~~~~IQ~~~Rg~l~Rk~~~  755 (794)
T d2mysa2         676 RVLNASAIPEGQFMDSKKASEKLLGGGDVDHTQYAFGHTKVFFKAGLLGLLEEMRDDKLAEIITATQARCRGFLMRVEYR  755 (794)
T ss_dssp             GGGTTTC------CCTTHHHHHHTTSSSCCSSSEEEETTEEEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcccccccccCCHHHHHHHHHHhcCCCcccEEeCCCeEEeCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888762                     11               112568999999999999999999999999999998


Q ss_pred             HH---HHHHHHHHHHHHhhhhhhhHHh
Q psy18109        461 KR---KRSQIIIASAWRSWRFVPILFV  484 (602)
Q Consensus       461 k~---r~aai~IQ~~~R~~~~r~r~l~  484 (602)
                      +|   |.|+++||++||+|+.|++|.-
T Consensus       756 ~~~~~r~a~~~IQ~~~R~~~~~r~~~~  782 (794)
T d2mysa2         756 AMVERRESIFCIQYNVRSFMNVKHWPW  782 (794)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            87   6789999999999999988643
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure