Psyllid ID: psy18111

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180------
Protein Sequence
MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEcEEEEEccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHccccccccccccccccccEEEEEccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHEEcccEEEEEccccccccccHHHHHHHcccccccccccEEEEcHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHcHHHHHHccccEEEccccccccEEEEEEEccccEEEEccEEccc
Coil and Loop (DISEMBL)
mdpplvvdsetgawdcvlldplsedtfisnlhlrykRDHIYTYIGNVLvtvnpykplniYSAELARAYrtrgpfqlpphIFAIAGSAYRWLrdrsedqciivsgesgsgktqAASMVVYFIAcatpgtgpVLNAVREKLKHIGPLLEAfgnaqtlkndnssrfgkyldiefdykgdplgahitnck
Flexible Loop (DISEMBL)
mdpplvvdsetgawDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSgesgsgktQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAfgnaqtlkndnssRFGKYLDIEfdykgdplgahitnck
Low Complexity Region (SEG)
MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK
Disordered region (IsUnstruct)
********SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGE*****TQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA******
Disordered Region (DISOPRED)
**********TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC**************KLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNC*
Disordered Region (DISEMBL)
MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK
Disordered Region (DISPRO)
*DPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	186	2.2.26 [Sep-21-2011]
O43795	1136	Unconventional myosin-Ib	no	N/A	0.956	0.156	0.553	6e-56
P46735	1107	Unconventional myosin-Ib	yes	N/A	0.956	0.160	0.553	7e-56
Q05096	1136	Unconventional myosin-Ib	yes	N/A	0.956	0.156	0.553	1e-55
P10568	1043	Unconventional myosin-Ia	no	N/A	0.956	0.170	0.541	3e-54
Q62774	842	Unconventional myosin-Ia	no	N/A	0.924	0.204	0.543	3e-53
Q9UBC5	1043	Unconventional myosin-Ia	no	N/A	0.956	0.170	0.530	4e-53
O88329	1043	Unconventional myosin-Ia	no	N/A	0.956	0.170	0.519	1e-52
P47807	1045	Unconventional myosin-Ia	no	N/A	0.908	0.161	0.547	7e-52
A0MP03	1028	Unconventional myosin-Ic-	N/A	N/A	0.983	0.178	0.513	3e-49
Q92002	1028	Unconventional myosin-Ic	N/A	N/A	0.983	0.178	0.508	8e-49

>sp|O43795|MYO1B_HUMAN Unconventional myosin-Ib OS=Homo sapiens GN=MYO1B PE=1 SV=3

 Score =  216 bits (550), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Motor protein that may participate in process critical to neuronal development and function such as cell migration, neurite outgrowth and vesicular transport.
Homo sapiens (taxid: 9606)

>sp|P46735|MYO1B_MOUSE Unconventional myosin-Ib OS=Mus musculus GN=Myo1b PE=2 SV=3

 Score =  216 bits (550), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+E+TFI NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLNEETFIDNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Motor protein that may participate in process critical to neuronal development and function such as cell migration, neurite outgrowth and vesicular transport.

Mus musculus (taxid: 10090)

>sp|Q05096|MYO1B_RAT Unconventional myosin-Ib OS=Rattus norvegicus GN=Myo1b PE=2 SV=1

 Score =  215 bits (548), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+E+TFI NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDTVLLEPLNEETFIDNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSTPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Motor protein that may participate in process critical to neuronal development and function such as cell migration, neurite outgrowth and vesicular transport.

Rattus norvegicus (taxid: 10116)

>sp|P10568|MYO1A_BOVIN Unconventional myosin-Ia OS=Bos taurus GN=MYO1A PE=2 SV=1

 Score =  210 bits (535), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 134/179 (74%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           +++   G  D VLL+PL +++ I NL LRY++  IYTYIGNVLV+VNPY+ L IY  E  
Sbjct: 3   LLEGSVGVEDLVLLEPLEQESLIRNLQLRYEKKEIYTYIGNVLVSVNPYQQLPIYDLEFV 62

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR    ++L PHI+A+A  AY+ LRDR  DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 63  AKYRDYTFYELKPHIYALANMAYQSLRDRDRDQCILITGESGAGKTEASKLVMSYVA-AV 121

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N+V+E+L    P+LEAFGNA+T++N+NSSRFGKY+DIEFD+KG PLG  ITN
Sbjct: 122 CGKGEQVNSVKEQLLQSNPVLEAFGNAKTIRNNNSSRFGKYMDIEFDFKGFPLGGVITN 180

Involved in directing the movement of organelles along actin filaments.

Bos taurus (taxid: 9913)

>sp|Q62774|MYO1A_RAT Unconventional myosin-Ia (Fragment) OS=Rattus norvegicus GN=Myo1a PE=2 SV=1

 Score =  207 bits (527), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 94/173 (54%), Positives = 131/173 (75%), Gaps = 1/173 (0%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D +LL+PL E++ I NL LRY++  IYTYIGNV++++NPY+ L IY  E    YR  
Sbjct: 1   GVEDLILLEPLDEESLIKNLQLRYEKKEIYTYIGNVVISMNPYQQLPIYGPEFIAKYRDY 60

Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
             ++L PHI+A+A  AY+ L+DR  DQCI+++GESG+GKT+A+ +V+ ++A A  G G  
Sbjct: 61  TFYELKPHIYALANVAYQSLKDRDRDQCILITGESGAGKTEASKLVMSYVA-AVCGKGEQ 119

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           +N+V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KG PLG  ITN
Sbjct: 120 VNSVKEQLLQSNPVLEAFGNAKTIRNDNSSRFGKYMDIEFDFKGSPLGGVITN 172

Involved in directing the movement of organelles along actin filaments.

Rattus norvegicus (taxid: 10116)

>sp|Q9UBC5|MYO1A_HUMAN Unconventional myosin-Ia OS=Homo sapiens GN=MYO1A PE=1 SV=1

 Score =  207 bits (526), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 95/179 (53%), Positives = 133/179 (74%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           +++   G  D VLL+PL E++ + NL LRY+   IYTYIGNV+++VNPY+ L IY  E  
Sbjct: 3   LLEGSVGVEDLVLLEPLVEESLLKNLQLRYENKEIYTYIGNVVISVNPYQQLPIYGPEFI 62

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             Y+    ++L PHI+A+A  AY+ LRDR  DQCI+++GESGSGKT+A+ +V+ ++A A 
Sbjct: 63  AKYQDYTFYELKPHIYALANVAYQSLRDRDRDQCILITGESGSGKTEASKLVMSYVA-AV 121

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N+V+E+L    P+LEAFGNA+T++N+NSSRFGKY+DIEFD+KG PLG  ITN
Sbjct: 122 CGKGEQVNSVKEQLLQSNPVLEAFGNAKTIRNNNSSRFGKYMDIEFDFKGSPLGGVITN 180

Involved in directing the movement of organelles along actin filaments.

Homo sapiens (taxid: 9606)

>sp|O88329|MYO1A_MOUSE Unconventional myosin-Ia OS=Mus musculus GN=Myo1a PE=2 SV=2

 Score =  205 bits (521), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 133/179 (74%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           +++   G  D +LL+PL E++ I NL LRY+   IYTYIGNV++++NPY+ L IY  E  
Sbjct: 3   LLEGPVGVEDLILLEPLDEESLIKNLQLRYENKEIYTYIGNVVISMNPYEQLPIYGPEFI 62

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR    ++L PHI+A+A  AY+ L+DR  DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 63  AKYRDYTFYELKPHIYALANVAYQSLKDRDRDQCILITGESGAGKTEASKLVMSYVA-AV 121

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N+V+E+L    P+LEAFGNA+T++N+NSSRFGKY+DIEFD+KG PLG  ITN
Sbjct: 122 CGKGEQVNSVKEQLLQSNPVLEAFGNAKTIRNNNSSRFGKYMDIEFDFKGSPLGGVITN 180

Involved in directing the movement of organelles along actin filaments.

Mus musculus (taxid: 10090)

>sp|P47807|MYO1A_CHICK Unconventional myosin-Ia OS=Gallus gallus GN=MYO1A PE=1 SV=2

 Score =  202 bits (515), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 93/170 (54%), Positives = 126/170 (74%), Gaps = 1/170 (0%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D V+LDPLSE++ +  L  R+ R  IYTYIG V+++VNPYKPL IY+ E    Y     F
Sbjct: 15  DLVMLDPLSEESLLRTLQERFSRGEIYTYIGEVVISVNPYKPLPIYTPEKVEEYHNCNFF 74

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA 134
            + PHI+AIA  AYR LRDR  DQCI+++GESG+GKT+A+ +V+ ++A A    G  ++ 
Sbjct: 75  AVKPHIYAIADDAYRSLRDRDRDQCILITGESGAGKTEASKLVMSYVA-AVSSKGEEVDK 133

Query: 135 VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           V+E+L    P+LEAFGNA+T++NDNSSRFGKY+D+EFD+KGDPLG  I+N
Sbjct: 134 VKEQLLQSNPVLEAFGNAKTIRNDNSSRFGKYMDVEFDFKGDPLGGVISN 183

Could play an important role in morphogenesis and function of intestinal microvilli.

Gallus gallus (taxid: 9031)

>sp|A0MP03|MY1CA_XENLA Unconventional myosin-Ic-A OS=Xenopus laevis GN=myo1c-a PE=1 SV=1

 Score =  194 bits (493), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 95/185 (51%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MDPPLVVDSETGAWDCVLLDP-LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNI 59
           M+  L      G  D VLL+   SE  FI NL  R+K + IYTYIG+VLV+VNPYK L I
Sbjct: 1   MENALTARDRVGVQDFVLLENYTSEAAFIENLRKRFKENLIYTYIGSVLVSVNPYKDLEI 60

Query: 60  YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
           YS +    YR    +++ PHI+AIA ++YR LR   +DQCI++SGESGSGKT+A+  ++ 
Sbjct: 61  YSKQHMERYRGVSFYEVSPHIYAIADNSYRSLRTERKDQCILISGESGSGKTEASKKILQ 120

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
           + A   P +  V   V+++L    P+LEAFGNA+TL+NDNSSRFGKY+D++FDYKG P+G
Sbjct: 121 YYAVTCPASDQV-ETVKDRLLQSNPVLEAFGNAKTLRNDNSSRFGKYMDVQFDYKGAPVG 179

Query: 180 AHITN 184
            HI N
Sbjct: 180 GHILN 184

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Involved in egg activation by coupling dynamic actin to membrane.

Xenopus laevis (taxid: 8355)

>sp|Q92002|MYO1C_LITCT Unconventional myosin-Ic OS=Lithobates catesbeiana GN=Myo1c PE=2 SV=1

 Score =  192 bits (489), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 94/185 (50%), Positives = 127/185 (68%), Gaps = 2/185 (1%)

Query: 1   MDPPLVVDSETGAWDCVLLDP-LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNI 59
           M+  L      G  D VLL+   SE  FI NL  R+K + IYTYIG+VLV+VNPYK L I
Sbjct: 1   MESALTARDRVGVQDFVLLENYTSEAAFIENLRKRFKENLIYTYIGSVLVSVNPYKELEI 60

Query: 60  YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
           YS +    YR    +++ PHI+AIA ++YR LR   +DQCI++SGESG+GKT+A+  ++ 
Sbjct: 61  YSKQHMERYRGVSFYEVSPHIYAIADNSYRSLRTERKDQCILISGESGAGKTEASKKILQ 120

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
           + A   P +  V   V+++L    P+LEAFGNA+TL+NDNSSRFGKY+D++FDYKG P+G
Sbjct: 121 YYAVTCPVSDQV-ETVKDRLLQSNPVLEAFGNAKTLRNDNSSRFGKYMDVQFDYKGAPVG 179

Query: 180 AHITN 184
            HI N
Sbjct: 180 GHILN 184

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments.

Lithobates catesbeiana (taxid: 8400)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
189234926	1040	PREDICTED: similar to unconventional myo	0.967	0.173	0.651	8e-67
270002310	1011	hypothetical protein TcasGA2_TC001321 [T	0.962	0.177	0.65	9e-66
242006356	1031	myosin Ib, putative [Pediculus humanus c	0.962	0.173	0.577	7e-58
301765246	1078	PREDICTED: myosin-Ib-like isoform 2 [Ail	0.956	0.165	0.564	3e-55
301765244	1136	PREDICTED: myosin-Ib-like isoform 1 [Ail	0.956	0.156	0.564	4e-55
405977557	1091	Myosin-Ib [Crassostrea gigas]	0.956	0.163	0.558	5e-55
449268751	1105	Myosin-Ib [Columba livia]	0.956	0.161	0.547	5e-55
116283644	307	MYO1B protein [Homo sapiens]	0.956	0.579	0.553	7e-55
326922489	789	PREDICTED: myosin-Ib-like [Meleagris gal	0.956	0.225	0.541	8e-55
74005024	1078	PREDICTED: myosin-Ib isoform 1 [Canis lu	0.956	0.165	0.558	8e-55

>gi|189234926|ref|XP_971077.2| PREDICTED: similar to unconventional myosin 95e [Tribolium castaneum]

 Score =  258 bits (659), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 118/181 (65%), Positives = 147/181 (81%), Gaps = 1/181 (0%)

Query: 5   LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAEL 64
           L ++ E G WD VLL+PLSEDTFI+NL  R+KRDHIYTYIGNVLV+VNPYK L +YS +L
Sbjct: 2   LNLEQEVGVWDSVLLEPLSEDTFIANLQQRFKRDHIYTYIGNVLVSVNPYKKLALYSTDL 61

Query: 65  ARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA 124
              Y  RGPFQLPPHI+AIAGSAYRWL DR+EDQCI+V+GESGSGKT+AA +V+ F+   
Sbjct: 62  VETYVKRGPFQLPPHIYAIAGSAYRWLNDRNEDQCIVVTGESGSGKTEAARIVLQFLVLV 121

Query: 125 TPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           + G    +  ++++L     LLEAFGNA+T+KNDN+SRFGK+LDIEFDYKGDP+G H+T+
Sbjct: 122 S-GDIVGVKLMKDRLVQANTLLEAFGNARTMKNDNASRFGKFLDIEFDYKGDPVGGHLTH 180

Query: 185 C 185
           C
Sbjct: 181 C 181

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002310|gb|EEZ98757.1| hypothetical protein TcasGA2_TC001321 [Tribolium castaneum]

 Score =  254 bits (650), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 117/180 (65%), Positives = 146/180 (81%), Gaps = 1/180 (0%)

Query: 5   LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAEL 64
           L ++ E G WD VLL+PLSEDTFI+NL  R+KRDHIYTYIGNVLV+VNPYK L +YS +L
Sbjct: 2   LNLEQEVGVWDSVLLEPLSEDTFIANLQQRFKRDHIYTYIGNVLVSVNPYKKLALYSTDL 61

Query: 65  ARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA 124
              Y  RGPFQLPPHI+AIAGSAYRWL DR+EDQCI+V+GESGSGKT+AA +V+ F+   
Sbjct: 62  VETYVKRGPFQLPPHIYAIAGSAYRWLNDRNEDQCIVVTGESGSGKTEAARIVLQFLVLV 121

Query: 125 TPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           + G    +  ++++L     LLEAFGNA+T+KNDN+SRFGK+LDIEFDYKGDP+G H+T+
Sbjct: 122 S-GDIVGVKLMKDRLVQANTLLEAFGNARTMKNDNASRFGKFLDIEFDYKGDPVGGHLTH 180

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006356|ref|XP_002424017.1| myosin Ib, putative [Pediculus humanus corporis] gi|212507309|gb|EEB11279.1| myosin Ib, putative [Pediculus humanus corporis]

 Score =  228 bits (582), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 104/180 (57%), Positives = 137/180 (76%), Gaps = 1/180 (0%)

Query: 5   LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAEL 64
           L +D E GAWD VLLDPL+ +TFI NLH R+KRDHIYTYIGN+LV +NPYK L +YS EL
Sbjct: 4   LSLDQEVGAWDSVLLDPLNSETFIYNLHQRFKRDHIYTYIGNLLVAINPYKKLALYSEEL 63

Query: 65  ARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIAC 123
            + Y ++GP+QLPPH++AIAG+AYR+L DR+E+QCII+SGESGSGKT+A  +++ +F A 
Sbjct: 64  VKGYWSKGPYQLPPHMYAIAGTAYRFLLDRNENQCIILSGESGSGKTEAMKIILQFFCAI 123

Query: 124 ATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
           +            +       +LEAFGNA+T +NDNSSRFGKYLD+E+++KGD +G  IT
Sbjct: 124 SLDSKSQESQITTKHFVQANIVLEAFGNAKTCRNDNSSRFGKYLDVEYNFKGDAVGGTIT 183

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301765246|ref|XP_002918041.1| PREDICTED: myosin-Ib-like isoform 2 [Ailuropoda melanoleuca]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PLSE+TFI+NL  R+  D IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLSEETFINNLKKRFDHDEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|301765244|ref|XP_002918040.1| PREDICTED: myosin-Ib-like isoform 1 [Ailuropoda melanoleuca] gi|281353011|gb|EFB28595.1| hypothetical protein PANDA_006422 [Ailuropoda melanoleuca]

 Score =  219 bits (558), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 101/179 (56%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PLSE+TFI+NL  R+  D IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLSEETFINNLKKRFDHDEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|405977557|gb|EKC42000.1| Myosin-Ib [Crassostrea gigas]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 135/179 (75%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++++  G  D VLLDP+SED FI NL LRY+ + IYTYIG V+V+VNPYK   +Y+  + 
Sbjct: 10  ILENNVGVSDAVLLDPVSEDAFIENLKLRYQHNQIYTYIGTVVVSVNPYKTTPLYTPSII 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR+R  ++LPPHI+AI   AYR +RDR  DQCII+SGESG+GKT+A+ +++ ++A   
Sbjct: 70  EEYRSRNIYELPPHIYAITDEAYRSMRDRHLDQCIIISGESGAGKTEASKVIMQYVA-EV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  ++ V+E+L    P+LEAFGNA+T KNDNSSRFGKY+DIEFD+KGDP+G  ITN
Sbjct: 129 SGKGENIDTVKEQLLQSNPVLEAFGNAKTNKNDNSSRFGKYMDIEFDFKGDPIGGVITN 187

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|449268751|gb|EMC79600.1| Myosin-Ib [Columba livia]

 Score =  219 bits (557), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 140/179 (78%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+ED+FI+NL  R+  D +YTYIG+V++++NPY+PL IY+ E  
Sbjct: 7   LLDNMIGVGDMVLLEPLNEDSFINNLKKRFDHDEVYTYIGSVVISLNPYRPLPIYTPEKV 66

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 67  EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 125

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 126 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 184

Source: Columba livia

Species: Columba livia

Genus: Columba

Family: Columbidae

Order: Columbiformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116283644|gb|AAH21665.1| MYO1B protein [Homo sapiens]

 Score =  218 bits (556), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 99/179 (55%), Positives = 138/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326922489|ref|XP_003207481.1| PREDICTED: myosin-Ib-like [Meleagris gallopavo]

 Score =  218 bits (556), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 97/179 (54%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D   G  D VLL+PL+ED+FI+NL  R+  + +YTYIG+V++++NPY+PL IY+ E  
Sbjct: 10  LLDDMIGVGDMVLLEPLNEDSFINNLKKRFDHNEVYTYIGSVVISINPYRPLPIYTPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74005024|ref|XP_536008.2| PREDICTED: myosin-Ib isoform 1 [Canis lupus familiaris]

 Score =  218 bits (555), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 100/179 (55%), Positives = 139/179 (77%), Gaps = 1/179 (0%)

Query: 6   VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
           ++D+  G  D VLL+PL+EDTFI+NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct: 10  LLDNMIGVGDMVLLEPLNEDTFINNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query: 66  RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
             YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct: 70  EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query: 126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct: 129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	186
UNIPROTKB|E7EQD9	303	MYO1B "Unconventional myosin-I	0.956	0.587	0.553	1.5e-51
UNIPROTKB|D2H883	1136	PANDA_006422 "Putative unchara	0.956	0.156	0.564	2.5e-51
UNIPROTKB|J9NW77	1107	MYO1B "Uncharacterized protein	0.956	0.160	0.558	6.4e-51
UNIPROTKB|E2RB62	1136	MYO1B "Uncharacterized protein	0.956	0.156	0.558	6.8e-51
UNIPROTKB|E9PDF6	1107	MYO1B "Unconventional myosin-I	0.956	0.160	0.553	1.7e-50
UNIPROTKB|O43795	1136	MYO1B "Unconventional myosin-I	0.956	0.156	0.553	1.8e-50
UNIPROTKB|G1R4W8	1136	MYO1B "Uncharacterized protein	0.956	0.156	0.553	1.8e-50
UNIPROTKB|G1T0J3	1136	MYO1B "Uncharacterized protein	0.956	0.156	0.553	1.8e-50
UNIPROTKB|F1NTJ5	1100	Gga.13962 "Uncharacterized pro	0.956	0.161	0.541	2.2e-50
MGI|MGI:107752	1107	Myo1b "myosin IB" [Mus musculu	0.956	0.160	0.553	2.2e-50

UNIPROTKB|E7EQD9 MYO1B "Unconventional myosin-Ib" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 99/179 (55%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|D2H883 PANDA_006422 "Putative uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 543 (196.2 bits), Expect = 2.5e-51, P = 2.5e-51
 Identities = 101/179 (56%), Positives = 139/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PLSE+TFI+NL  R+  D IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLSEETFINNLKKRFDHDEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

UNIPROTKB|J9NW77 MYO1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 539 (194.8 bits), Expect = 6.4e-51, P = 6.4e-51
 Identities = 100/179 (55%), Positives = 139/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+EDTFI+NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEDTFINNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|E2RB62 MYO1B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 539 (194.8 bits), Expect = 6.8e-51, P = 6.8e-51
 Identities = 100/179 (55%), Positives = 139/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+EDTFI+NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEDTFINNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|E9PDF6 MYO1B "Unconventional myosin-Ib" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 99/179 (55%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

UNIPROTKB|O43795 MYO1B "Unconventional myosin-Ib" [Homo sapiens (taxid:9606)]

 Score = 535 (193.4 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 99/179 (55%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

UNIPROTKB|G1R4W8 MYO1B "Uncharacterized protein" [Nomascus leucogenys (taxid:61853)]

 Score = 535 (193.4 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 99/179 (55%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI+NL  R+    IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHSEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

UNIPROTKB|G1T0J3 MYO1B "Uncharacterized protein" [Oryctolagus cuniculus (taxid:9986)]

 Score = 535 (193.4 bits), Expect = 1.8e-50, P = 1.8e-50
 Identities = 99/179 (55%), Positives = 139/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI+NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFINNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

UNIPROTKB|F1NTJ5 Gga.13962 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 534 (193.0 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 97/179 (54%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D   G  D VLL+PL+ED+FI+NL  R+  + +YTYIG+V++++NPY+PL IY+ E  
Sbjct:     3 LLDYMIGVGDMVLLEPLNEDSFINNLKKRFDHNEVYTYIGSVVISINPYRPLPIYTPEKV 62

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+  V+ ++A A 
Sbjct:    63 EEYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKFVMSYVA-AV 121

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   122 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 180

GO:0016459 "myosin complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0051017 "actin filament bundle assembly" evidence=ISS

GO:0000146 "microfilament motor activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005903 "brush border" evidence=ISS

GO:0030175 "filopodium" evidence=ISS

GO:0071944 "cell periphery" evidence=ISS

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISS

MGI|MGI:107752 Myo1b "myosin IB" [Mus musculus (taxid:10090)]

 Score = 534 (193.0 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 99/179 (55%), Positives = 138/179 (77%)

Query:     6 VVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELA 65
             ++D+  G  D VLL+PL+E+TFI NL  R+  + IYTYIG+V+++VNPY+ L IYS E  
Sbjct:    10 LLDNMIGVGDMVLLEPLNEETFIDNLKKRFDHNEIYTYIGSVVISVNPYRSLPIYSPEKV 69

Query:    66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACAT 125
               YR R  ++L PHIFA++  AYR LRD+ +DQCI+++GESG+GKT+A+ +V+ ++A A 
Sbjct:    70 EDYRNRNFYELSPHIFALSDEAYRSLRDQDKDQCILITGESGAGKTEASKLVMSYVA-AV 128

Query:   126 PGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              G G  +N V+E+L    P+LEAFGNA+T++NDNSSRFGKY+DIEFD+KGDPLG  I+N
Sbjct:   129 CGKGAEVNQVKEQLLQSNPVLEAFGNAKTVRNDNSSRFGKYMDIEFDFKGDPLGGVISN 187

GO:0000146 "microfilament motor activity" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=ISO

GO:0003779 "actin binding" evidence=ISO

GO:0005516 "calmodulin binding" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0005546 "phosphatidylinositol-4,5-bisphosphate binding" evidence=ISO

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005903 "brush border" evidence=ISO

GO:0016459 "myosin complex" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=ISO

GO:0030175 "filopodium" evidence=ISO

GO:0051017 "actin filament bundle assembly" evidence=ISO

GO:0071944 "cell periphery" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P46735	MYO1B_MOUSE	No assigned EC number	0.5530	0.9569	0.1607	yes	N/A
Q05096	MYO1B_RAT	No assigned EC number	0.5530	0.9569	0.1566	yes	N/A
Q23978	MY31D_DROME	No assigned EC number	0.5027	0.9677	0.1780	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	186
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	3e-84
smart00242	677	smart00242, MYSc, Myosin	3e-80
cd00124	679	cd00124, MYSc, Myosin motor domain	5e-68
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	2e-67
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	8e-65
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	7e-54
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	6e-52
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	1e-51
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	1e-50
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	2e-49
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	6e-49
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	2e-47
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	1e-41
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	2e-41
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	9e-35
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	5e-31
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	2e-08

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score =  261 bits (669), Expect = 3e-84
 Identities = 87/170 (51%), Positives = 126/170 (74%), Gaps = 1/170 (0%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D VLL  +SE+  + NL  R++ D IYTYIG VL++VNP+K L IY+ E    Y+ +  +
Sbjct: 4   DLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRY 63

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA 134
           +LPPHI+A+A +AYR ++  +E+QC+I+SGESG+GKT+AA  ++ +IA  + G   V   
Sbjct: 64  ELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKV-ER 122

Query: 135 VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           V++ +    PLLEAFGNA+TL+N+NSSRFGKY++I+FD+KGDP+G  ITN
Sbjct: 123 VKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDFKGDPVGGKITN 172

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  250 bits (642), Expect = 3e-80
 Identities = 86/182 (47%), Positives = 121/182 (66%), Gaps = 5/182 (2%)

Query: 3   PPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSA 62
           PP     E    D VLL  L+E   + NL  RY +D IYTYIG VLV VNPYK L IY+ 
Sbjct: 2   PPKFEGVE----DLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTD 57

Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E+ + YR +   +LPPH+FAIA +AYR + +  E+Q II+SGESG+GKT+    ++ ++A
Sbjct: 58  EVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLA 117

Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
            +  G+   + +V +++    P+LEAFGNA+TL+N+NSSRFGK+++I FD KG  +GA I
Sbjct: 118 -SVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDAKGKIIGAKI 176

Query: 183 TN 184
             
Sbjct: 177 ET 178

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  218 bits (558), Expect = 5e-68
 Identities = 78/172 (45%), Positives = 107/172 (62%), Gaps = 5/172 (2%)

Query: 14  WDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGP 73
            D   L  L+E T ++NL  RYK+D IYTY G +L+ VNPYK L  Y  E  R YR +  
Sbjct: 3   DDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSR 62

Query: 74  FQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPGTGPVL 132
            +LPPH+FAIA  AYR +     +Q II+SGESG+GKT+   +++ Y         G   
Sbjct: 63  SELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYL----ASLAGSND 118

Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
             + EK+    P+LEAFGNA+T++N+NSSRFGK+++++FD  G   GA IT 
Sbjct: 119 TGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDETGKISGAKITT 170

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  217 bits (555), Expect = 2e-67
 Identities = 76/170 (44%), Positives = 111/170 (65%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L+E + + NL  RY  D IYTY G VL++VNPYK L IY+ E    YR +   
Sbjct: 3   DLAALTQLNETSVLHNLKKRYTGDLIYTYSGLVLISVNPYKRLPIYTEEPIGEYRGKRRG 62

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNA 134
           +LPPHIFA+A  AYR +    E+QCI++SGESG+GKT+    ++ ++A  +  T   +  
Sbjct: 63  ELPPHIFALADRAYRHMLRDKENQCIVISGESGAGKTENTKKLMQYLASVSGSTPSAVGP 122

Query: 135 VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
           + +++    P+LEAFGNA+TL+N+NSSRFGK+++I+FD  G  +G +I  
Sbjct: 123 LEDQILQSNPILEAFGNAKTLRNNNSSRFGKFIEIQFDATGSIVGGNIET 172

Length = 679

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score =  214 bits (548), Expect = 8e-65
 Identities = 77/184 (41%), Positives = 113/184 (61%), Gaps = 4/184 (2%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           +  P     +    D   L  L+E   + NL  RY    IYTY G VL+ VNPY+ L IY
Sbjct: 60  IKLPKFDGVD----DLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIY 115

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           + ++ ++Y  +   +L PH+FAIA  AYR L    E+Q II+SGESG+GKT+ A  ++ +
Sbjct: 116 TDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQY 175

Query: 121 IACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
           +A  T  +   ++++ +++    P+LEAFGNA+T++NDNSSRFGKY+ IEFD  G+  GA
Sbjct: 176 LASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDENGEICGA 235

Query: 181 HITN 184
            I  
Sbjct: 236 KIET 239

Length = 1463

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score =  181 bits (461), Expect = 7e-54
 Identities = 74/174 (42%), Positives = 104/174 (59%), Gaps = 6/174 (3%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L+E + + NL  RY  D IYTY G   V VNPYK L IY+ E+   YR +   
Sbjct: 9   DMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKRE 68

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YF--IACATPGTGPV 131
           ++PPHIFAIA +AYR +    E+Q I+++GESG+GKT+    V+ Y   +A ++      
Sbjct: 69  EMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQS 128

Query: 132 ---LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
                 + +++    P+LEAFGNA+T++NDNSSRFGK++ I F   G   GA I
Sbjct: 129 GKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGNTGKIAGADI 182

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  175 bits (446), Expect = 6e-52
 Identities = 76/173 (43%), Positives = 114/173 (65%), Gaps = 4/173 (2%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D + L  L E   + NL +RYK+  IYTY G++LV VNPY+ L IY+A+  + Y+ +
Sbjct: 1   GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNK 60

Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
              +LPPHIFAI+ +AY  ++   ++QCII+SGESG+GKT++  +++ ++A  +     +
Sbjct: 61  SIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKHSWI 120

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              + E      P+LEAFGNA+T++NDNSSRFGKY+DI F+ +G   GA I  
Sbjct: 121 EQQILEA----NPILEAFGNAKTIRNDNSSRFGKYIDIHFNKRGAIEGAKIEQ 169

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  174 bits (444), Expect = 1e-51
 Identities = 71/172 (41%), Positives = 107/172 (62%), Gaps = 1/172 (0%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSAELARAYRT 70
           G  D   L  L E   + NL  RY+ + IYTY GN+L+ VNP++ L ++Y   +   Y+ 
Sbjct: 2   GVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKG 61

Query: 71  RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP 130
               +L PH+FAIA +AYR + +  + Q I+VSGESG+GKT+   M++ ++A      G 
Sbjct: 62  AALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGV 121

Query: 131 VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
               V +++    P+LEAFGNA+T++N+NSSRFGK+++I+FD  G   GA I
Sbjct: 122 EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDDYGRISGAAI 173

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score =  172 bits (437), Expect = 1e-50
 Identities = 78/172 (45%), Positives = 113/172 (65%), Gaps = 4/172 (2%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L+ L E T + NL LR++R+ IYTYIG++LV+VNPYK   IY  E  + Y  R
Sbjct: 2   GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGR 61

Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
              + PPH+FAIA  A+  + D  ++QC+I+SGESGSGKT+A  +++ ++A    G   V
Sbjct: 62  ALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAV 121

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
              + E++    PLLEAFGNA+T++NDNSSRFGK+++I  +  G  +GA  +
Sbjct: 122 ---ITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE-GGVIVGAITS 169

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  169 bits (430), Expect = 2e-49
 Identities = 76/170 (44%), Positives = 105/170 (61%), Gaps = 2/170 (1%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L E   + NL +R+ +  IYTY G VLV +NPY  L IY  E+ +AY  +   
Sbjct: 4   DLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKG 63

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIAC-ATPGTGPVL 132
           +L PHIFAIA  AY+ +    ++Q IIVSGESG+GKT +A  ++ YF +   +       
Sbjct: 64  ELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSE 123

Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             V EK+    P++EAFGNA+T +NDNSSRFGKY+ I FD +G  +GA++
Sbjct: 124 TQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDKRGRIIGANM 173

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score =  168 bits (426), Expect = 6e-49
 Identities = 68/163 (41%), Positives = 109/163 (66%), Gaps = 5/163 (3%)

Query: 22  LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSAELARAYRTRGPFQLPPHI 80
           L+E T ++N+ +RY +D IYTY+ N+L+ VNPY  +  +YS++  + Y+ +    LPPH+
Sbjct: 15  LNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHV 74

Query: 81  FAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLK 140
           FAIA  AYR ++     Q IIVSGESG+GKT+    V+ ++   + G+G     + +++ 
Sbjct: 75  FAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYL-TESYGSG---QDIDDRIV 130

Query: 141 HIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
              PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  ++
Sbjct: 131 EANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKNSVVGGFVS 173

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score =  163 bits (414), Expect = 2e-47
 Identities = 76/172 (44%), Positives = 113/172 (65%), Gaps = 9/172 (5%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L+ L EDT +  L  RY+ + IYTY+G++L+ VNP++ L +Y+ + +R Y  +   
Sbjct: 4   DLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRS 63

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV---YFIACATPGTGPV 131
             PPHIFAIA +AY+ L   ++DQCI++SGESGSGKT++A ++V     +  A   T   
Sbjct: 64  SNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRT--- 120

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHIT 183
              ++EK+  +  L+EAFGNA+T  NDNSSRFGKYL+++F   G  +GA I+
Sbjct: 121 ---LQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTRSGAVVGARIS 169

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  147 bits (373), Expect = 1e-41
 Identities = 73/170 (42%), Positives = 107/170 (62%), Gaps = 4/170 (2%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAY--RTRG 72
           D   L  L+E T + NL  R+ + HIYTY G++LV VNP+K L IY+ +  R Y  + R 
Sbjct: 11  DLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRL 70

Query: 73  PFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVL 132
             +LPPHIFAIA  AY  +  +  +QCI++SGESGSGKT++ + +++ +  A    G   
Sbjct: 71  G-KLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLT-ALSQKGYAG 128

Query: 133 NAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           + V + +   GP+LEAFGNA+T  N+NSSRFGK++ + +   G   GA +
Sbjct: 129 SGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRENGMVRGAVV 178

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score =  147 bits (372), Expect = 2e-41
 Identities = 71/171 (41%), Positives = 102/171 (59%), Gaps = 7/171 (4%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D + L  L+E + + NL  RY +D IYT  G VLV VNP+K + +Y  +   AYR +
Sbjct: 9   GVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKK 68

Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
                 PH++AIA +AY  +     +Q II+SGESG+GKT+ A + + ++A    G+G  
Sbjct: 69  --SNDSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGSG-- 124

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
              +  ++    P+LEAFGNA+T +NDNSSRFGK ++I F   G   GA I
Sbjct: 125 ---IEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSETGKISGAKI 172

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score =  128 bits (324), Expect = 9e-35
 Identities = 57/148 (38%), Positives = 87/148 (58%), Gaps = 7/148 (4%)

Query: 31  LHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYR-TRGPFQLPPHIFAIAGSAYR 89
           L  RY ++ IYT    +LV +NP+K L   + +  R YR  +   +LPPH+F  A  A  
Sbjct: 116 LKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALE 175

Query: 90  WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGT--GPVLNAVREKLKHIGPLLE 147
            L    + Q IIVSGESG+GKT+A   ++ + A +  G     + NA+        P+LE
Sbjct: 176 NLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQNAIMAA----NPVLE 231

Query: 148 AFGNAQTLKNDNSSRFGKYLDIEFDYKG 175
           AFGNA+T++N+NSSRFG+++ ++   +G
Sbjct: 232 AFGNAKTIRNNNSSRFGRFMQLQLGEEG 259

Length = 821

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score =  118 bits (296), Expect = 5e-31
 Identities = 58/162 (35%), Positives = 90/162 (55%), Gaps = 4/162 (2%)

Query: 22  LSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIF 81
           L+E + +  L  RY  + I+T  G  L+ +NP  PL +YS ++   +R      +PPHI+
Sbjct: 11  LNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIY 70

Query: 82  AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVR-EKLK 140
           ++A +AYR L +   DQ II  G SG+GKT +    + ++A A    G V   V  EK++
Sbjct: 71  SLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALA---AGSVDGRVSVEKVR 127

Query: 141 HIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
            +  +LEAFGN  T  N N++RF + L ++FD  G    A +
Sbjct: 128 ALFTILEAFGNVSTALNGNATRFTQILSLDFDQTGQIASASL 169

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 51.4 bits (123), Expect = 2e-08
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 80  IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKL 139
           +F   G   +   D   + CI   G++GSGKT       Y +     G G ++      +
Sbjct: 8   VFRDVGPLLQSALD-GYNVCIFAYGQTGSGKT-------YTMEGKREGAG-IIPRTVTDV 58

Query: 140 KHIGPLLEAFG-NAQTLKNDNSSRFGKYLDIEFDYKG 175
             +     A    A T  N++SSR      I F  K 
Sbjct: 59  IDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKN 95

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	186
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
PTZ00014	821	myosin-A; Provisional	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
KOG0164|consensus	1001		100.0
KOG0161|consensus	1930		100.0
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG0162|consensus	1106		100.0
KOG0163|consensus	1259		100.0
KOG0160|consensus	862		100.0
KOG4229|consensus	1062		100.0
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	98.86
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.07
KOG0925|consensus	699		96.92
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	96.69
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.69
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	96.66
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.57
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.49
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	96.45
PRK06762	166	hypothetical protein; Provisional	96.44
PRK05480	209	uridine/cytidine kinase; Provisional	96.43
smart00382	148	AAA ATPases associated with a variety of cellular	96.42
PRK07261	171	topology modulation protein; Provisional	96.39
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	96.39
PRK00300	205	gmk guanylate kinase; Provisional	96.37
PRK05541	176	adenylylsulfate kinase; Provisional	96.33
PF00004	132	AAA: ATPase family associated with various cellula	96.32
PRK08118	167	topology modulation protein; Reviewed	96.3
TIGR00235	207	udk uridine kinase. Model contains a number of lon	96.3
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	96.29
PRK06696	223	uridine kinase; Validated	96.28
PRK00131	175	aroK shikimate kinase; Reviewed	96.26
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.22
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.19
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	96.19
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	96.19
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.16
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.09
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.08
PRK00889	175	adenylylsulfate kinase; Provisional	96.07
PRK08233	182	hypothetical protein; Provisional	96.05
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.03
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.0
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	95.96
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	95.95
PRK06547	172	hypothetical protein; Provisional	95.94
PTZ00301	210	uridine kinase; Provisional	95.94
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	95.93
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	95.88
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	95.88
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	95.88
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	95.87
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	95.86
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	95.85
PRK06217	183	hypothetical protein; Validated	95.82
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	95.8
PRK03846	198	adenylylsulfate kinase; Provisional	95.79
PRK08084	235	DNA replication initiation factor; Provisional	95.77
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.77
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	95.77
PF05729	166	NACHT: NACHT domain	95.76
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	95.75
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.75
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.73
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	95.69
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	95.66
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	95.66
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	95.63
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	95.6
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	95.58
PRK14738	206	gmk guanylate kinase; Provisional	95.57
PRK12402	337	replication factor C small subunit 2; Reviewed	95.53
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	95.52
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.52
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	95.46
PRK14737	186	gmk guanylate kinase; Provisional	95.46
PRK09825	176	idnK D-gluconate kinase; Provisional	95.45
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	95.44
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	95.44
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	95.42
PRK05057	172	aroK shikimate kinase I; Reviewed	95.41
PRK14527	191	adenylate kinase; Provisional	95.38
COG4172	534	ABC-type uncharacterized transport system, duplica	95.37
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	95.37
PRK04040	188	adenylate kinase; Provisional	95.36
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	95.35
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	95.34
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	95.34
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	95.34
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	95.34
PF12846	304	AAA_10: AAA-like domain	95.33
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	95.33
PF13245	76	AAA_19: Part of AAA domain	95.32
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.32
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	95.32
PLN03025	319	replication factor C subunit; Provisional	95.3
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	95.3
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	95.3
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	95.29
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	95.28
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.28
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	95.28
COG1123	539	ATPase components of various ABC-type transport sy	95.27
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	95.26
PRK04182	180	cytidylate kinase; Provisional	95.26
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	95.26
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	95.25
PF00005	137	ABC_tran: ABC transporter This structure is on hol	95.25
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	95.24
PRK08903	227	DnaA regulatory inactivator Hda; Validated	95.24
PHA02544	316	44 clamp loader, small subunit; Provisional	95.23
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	95.22
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	95.22
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	95.22
PLN02165	334	adenylate isopentenyltransferase	95.22
PRK14531	183	adenylate kinase; Provisional	95.21
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	95.21
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	95.2
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	95.2
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	95.2
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	95.19
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	95.19
PRK03839	180	putative kinase; Provisional	95.18
PHA02530	300	pseT polynucleotide kinase; Provisional	95.18
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	95.15
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	95.15
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	95.13
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.11
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	95.1
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.09
PRK06893	229	DNA replication initiation factor; Validated	95.07
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	95.04
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	95.03
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	95.03
PRK12377	248	putative replication protein; Provisional	95.01
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.01
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	95.01
PRK07667	193	uridine kinase; Provisional	95.01
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	95.01
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	95.01
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	95.01
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	94.99
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	94.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	94.96
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	94.95
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	94.95
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	94.94
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	94.94
COG1123	539	ATPase components of various ABC-type transport sy	94.92
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	94.9
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	94.89
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	94.89
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	94.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	94.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	94.88
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	94.87
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	94.87
PRK00440	319	rfc replication factor C small subunit; Reviewed	94.86
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	94.86
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	94.86
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	94.86
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	94.85
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	94.83
cd03269	210	ABC_putative_ATPase This subfamily is involved in	94.82
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.78
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	94.77
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	94.76
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	94.76
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	94.76
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	94.74
cd03234	226	ABCG_White The White subfamily represents ABC tran	94.73
PRK13851	344	type IV secretion system protein VirB11; Provision	94.73
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	94.73
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	94.72
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	94.72
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	94.72
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	94.72
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	94.71
PRK00698	205	tmk thymidylate kinase; Validated	94.71
PRK10908	222	cell division protein FtsE; Provisional	94.71
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	94.7
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	94.7
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	94.69
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	94.69
PRK08727	233	hypothetical protein; Validated	94.68
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	94.65
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	94.65
COG0802	149	Predicted ATPase or kinase [General function predi	94.62
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	94.62
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	94.61
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	94.61
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	94.6
PF13555	62	AAA_29: P-loop containing region of AAA domain	94.59
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	94.59
cd03246	173	ABCC_Protease_Secretion This family represents the	94.58
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	94.58
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	94.57
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	94.57
TIGR02533	486	type_II_gspE general secretory pathway protein E.	94.55
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	94.55
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	94.55
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	94.55
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	94.54
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	94.54
PRK14528	186	adenylate kinase; Provisional	94.53
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	94.53
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	94.52
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	94.5
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	94.5
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	94.5
PRK13342	413	recombination factor protein RarA; Reviewed	94.5
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	94.5
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	94.5
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	94.49
PRK13946	184	shikimate kinase; Provisional	94.49
PF13173	128	AAA_14: AAA domain	94.48
PHA00729	226	NTP-binding motif containing protein	94.48
cd03215	182	ABC_Carb_Monos_II This family represents domain II	94.47
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	94.47
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	94.46
PRK03731	171	aroL shikimate kinase II; Reviewed	94.43
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	94.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	94.41
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	94.41
PRK14530	215	adenylate kinase; Provisional	94.41
PRK13947	171	shikimate kinase; Provisional	94.41
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	94.4
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	94.4
PLN02348	395	phosphoribulokinase	94.4
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	94.39
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	94.38
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	94.38
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	94.38
KOG0924|consensus	1042		94.37
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	94.36
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	94.36
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	94.35
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	94.35
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	94.35
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	94.33
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	94.33
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	94.32
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	94.31
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.3
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	94.3
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	94.3
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	94.29
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	94.29
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	94.29
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	94.28
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	94.28
cd03115	173	SRP The signal recognition particle (SRP) mediates	94.27
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	94.27
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	94.27
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	94.26
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	94.26
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	94.25
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	94.25
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	94.25
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	94.25
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	94.24
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	94.24
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	94.24
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	94.24
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	94.24
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	94.24
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	94.22
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	94.22
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	94.21
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	94.21
PRK00625	173	shikimate kinase; Provisional	94.2
COG1660	286	Predicted P-loop-containing kinase [General functi	94.2
PRK08356	195	hypothetical protein; Provisional	94.19
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	94.19
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	94.19
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	94.18
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	94.17
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	94.17
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	94.16
PRK14974	336	cell division protein FtsY; Provisional	94.16
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	94.16
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	94.16
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	94.15
COG4619	223	ABC-type uncharacterized transport system, ATPase	94.15
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	94.15
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	94.14
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	94.13
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	94.13
PRK15453	290	phosphoribulokinase; Provisional	94.12
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	94.12
PRK13764	602	ATPase; Provisional	94.12
PRK06761	282	hypothetical protein; Provisional	94.12
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	94.11
COG4172	534	ABC-type uncharacterized transport system, duplica	94.11
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	94.1
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	94.1
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	94.1
cd03216	163	ABC_Carb_Monos_I This family represents the domain	94.1
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	94.09
PRK13949	169	shikimate kinase; Provisional	94.09
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	94.08
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	94.08
PRK10416	318	signal recognition particle-docking protein FtsY;	94.07
PF07475	171	Hpr_kinase_C: HPr Serine kinase C-terminal domain;	94.06
PRK04220	301	2-phosphoglycerate kinase; Provisional	94.06
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	94.06
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	94.04
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	94.04
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	94.03
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	94.03
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	94.03
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	94.01
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	94.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	94.0
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	94.0
PRK08116	268	hypothetical protein; Validated	93.99
cd03116	159	MobB Molybdenum is an essential trace element in t	93.98
PRK06620	214	hypothetical protein; Validated	93.98
PRK09087	226	hypothetical protein; Validated	93.98
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	93.97
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	93.97
PRK10646	153	ADP-binding protein; Provisional	93.96
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	93.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	93.95
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	93.95
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	93.95
PRK12608	380	transcription termination factor Rho; Provisional	93.95
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	93.94
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	93.92
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	93.92
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	93.92
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	93.92
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	93.92
PRK14532	188	adenylate kinase; Provisional	93.92
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	93.91
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	93.91
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	93.91
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	93.91
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	93.9
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	93.89
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	93.88
PRK02496	184	adk adenylate kinase; Provisional	93.88
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	93.86
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	93.86
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	93.85
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	93.85
COG3638	258	ABC-type phosphate/phosphonate transport system, A	93.85
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	93.84
PLN02200	234	adenylate kinase family protein	93.84
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	93.84
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	93.83
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	93.82
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	93.82
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	93.82
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	93.82
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	93.8
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	93.8
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	93.8
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	93.8
TIGR00101	199	ureG urease accessory protein UreG. This model rep	93.79
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	93.79
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	93.78
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	93.78
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	93.78
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	93.78
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	93.78
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	93.77
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	93.76
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	93.75
PRK09984	262	phosphonate/organophosphate ester transporter subu	93.75
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	93.74
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	93.74
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	93.74
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	93.73
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	93.72
PRK09112	351	DNA polymerase III subunit delta'; Validated	93.72
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	93.7
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	93.7
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	93.7
PRK00279	215	adk adenylate kinase; Reviewed	93.69
cd01128	249	rho_factor Transcription termination factor rho is	93.68
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	93.68
KOG0056|consensus	790		93.67
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	93.67
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	93.66
PRK13695	174	putative NTPase; Provisional	93.65
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	93.64
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	93.62
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	93.62
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	93.62
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	93.61
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	93.6
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	93.6
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	93.6
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	93.59
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	93.59
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	93.58
PRK03695	248	vitamin B12-transporter ATPase; Provisional	93.57
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	93.57
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	93.57
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	93.56
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	93.56
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	93.56
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	93.55
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	93.54
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	93.53
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	93.53
PRK10261	623	glutathione transporter ATP-binding protein; Provi	93.52
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	93.52
TIGR00064	272	ftsY signal recognition particle-docking protein F	93.51
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	93.5
PRK10522	547	multidrug transporter membrane component/ATP-bindi	93.5
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	93.5
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	93.49
KOG3354|consensus	191		93.49
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	93.49
PRK06921	266	hypothetical protein; Provisional	93.48
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	93.47
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	93.47
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	93.46
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	93.46
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	93.44
PLN02796	347	D-glycerate 3-kinase	93.43
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	93.43
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	93.43
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	93.43
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	93.43
PRK05439	311	pantothenate kinase; Provisional	93.42
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	93.41
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	93.41
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	93.39
PLN02318	656	phosphoribulokinase/uridine kinase	93.39
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	93.38
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	93.38
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	93.37
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	93.36
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	93.36
PRK13975	196	thymidylate kinase; Provisional	93.36
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	93.36
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	93.36
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	93.35
COG2884	223	FtsE Predicted ATPase involved in cell division [C	93.35
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	93.33
PRK13341	725	recombination factor protein RarA/unknown domain f	93.33
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	93.31
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	93.31
PRK10436	462	hypothetical protein; Provisional	93.3
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	93.29
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	93.27
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	93.26
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	93.26
PRK09435	332	membrane ATPase/protein kinase; Provisional	93.25
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	93.25
PRK10261	623	glutathione transporter ATP-binding protein; Provi	93.23
PRK00023	225	cmk cytidylate kinase; Provisional	93.23
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	93.21
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	93.21
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	93.21
cd03299	235	ABC_ModC_like Archeal protein closely related to M	93.21
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	93.21
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	93.19
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	93.18
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	93.17
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	93.17
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	93.14
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	93.14
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	93.14
PRK13546	264	teichoic acids export protein ATP-binding subunit;	93.13
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	93.11
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	93.1
PRK13537	306	nodulation ABC transporter NodI; Provisional	93.07
PRK10938	490	putative molybdenum transport ATP-binding protein	93.05
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	93.05
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	93.05
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	93.05
PTZ00088	229	adenylate kinase 1; Provisional	93.04
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	93.04
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	93.04
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	93.03
PRK04195	482	replication factor C large subunit; Provisional	93.02
PRK07429	327	phosphoribulokinase; Provisional	93.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	92.99
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	92.97
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	92.97
COG1493	308	HprK Serine kinase of the HPr protein, regulates c	92.97
PRK09183	259	transposase/IS protein; Provisional	92.96
PRK01184	184	hypothetical protein; Provisional	92.95
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	92.94

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=1e-61  Score=457.77  Aligned_cols=177  Identities=43%  Similarity=0.731  Sum_probs=169.6

Q ss_pred             CCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHH
Q psy18111          9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAY   88 (186)
Q Consensus         9 ~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~   88 (186)
                      .-.+++||+.|++|||++|+++|++||.+++||||.|-+|||||||+++++|+++++..|.++++.+++||||+||+.||
T Consensus        64 ~~~~vdDLt~LSyLNEpsVl~nL~kRY~n~~IYTYSGlvLIAvNPy~~L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY  143 (1463)
T COG5022          64 KFDGVDDLTELSYLNEPAVLHNLEKRYNNGQIYTYSGLVLIAVNPYRDLGIYTDDIIQSYSGKNRLELEPHVFAIAEEAY  143 (1463)
T ss_pred             cccCchhhhhhhccCcHHHHHHHHHHhhcCceeEEeeeEEEEecCcccCCCccHHHHHHhccCccccCCchHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC-CCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG-TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL  167 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~-~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~  167 (186)
                      ++|...++|||||++||||||||+++|+||+||+ .+.+ +....+.++++|+++||||||||||||++||||||||||+
T Consensus       144 ~~lls~~eNQtIiISGESGAGKTe~aK~ImqYla-sv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyi  222 (1463)
T COG5022         144 RNLLSEKENQTIIISGESGAGKTENAKRIMQYLA-SVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYI  222 (1463)
T ss_pred             HHHHhcCCCceEEEecCCCCCchHHHHHHHHHHH-HhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceE
Confidence            9999999999999999999999999999999999 5544 3445678999999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeeEecccC
Q psy18111        168 DIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       168 ~l~f~~~g~i~ga~i~~y~  186 (186)
                      +|.||..|.|+||+|++||
T Consensus       223 kI~Fd~~g~I~GA~I~~YL  241 (1463)
T COG5022         223 KIEFDENGEICGAKIETYL  241 (1463)
T ss_pred             EEEECCCCceechhhhhhh
Confidence            9999999999999999997

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=3.2e-60  Score=436.96  Aligned_cols=181  Identities=40%  Similarity=0.666  Sum_probs=171.8

Q ss_pred             CCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCC-CCCCCchHHHh
Q psy18111          5 LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRG-PFQLPPHIFAI   83 (186)
Q Consensus         5 ~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~-~~~~~PHi~~~   83 (186)
                      ++.++..++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++. ..++|||||++
T Consensus         1 ~~~~~~~~~~Dl~~L~~lnE~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHiy~i   80 (692)
T cd01385           1 LLQRQQREYDDLCNLPELTEGTLLKNLRHRFLQGHIYTYAGSILVAVNPFKFLPIYNPKYVRLYENQQRLGKLPPHIFAI   80 (692)
T ss_pred             CCCCCcCCCChhhhCCCCCHHHHHHHHHHHHhcCCCeEeECCEEEEECCCcCCCCCCHHHHHHHhcCCCcCCCCCCHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999877 78899999999


Q ss_pred             HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCc
Q psy18111         84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRF  163 (186)
Q Consensus        84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~  163 (186)
                      |++||+.|+..+++||||++|||||||||++|.+++||+ ..++.+.....++++|++++|||||||||||.+|+|||||
T Consensus        81 A~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~-~~s~~~~~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRF  159 (692)
T cd01385          81 ADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLT-ALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRF  159 (692)
T ss_pred             HHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHH-HhccCCccCCcHHHHHHHHHHHHHHhhccccCCCCCcccc
Confidence            999999999999999999999999999999999999999 7765544456789999999999999999999999999999


Q ss_pred             eeeEEEEEcCCCCeeeeEecccC
Q psy18111        164 GKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       164 gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||++|+|+.+|.|+||+|++||
T Consensus       160 GK~i~l~F~~~g~i~Ga~i~~yL  182 (692)
T cd01385         160 GKFIQVNYRENGMVRGAVVEKYL  182 (692)
T ss_pred             ceeEEEEECCCCCEEEEEEEEee
Confidence            99999999999999999999996

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=3.1e-60  Score=441.86  Aligned_cols=175  Identities=33%  Similarity=0.519  Sum_probs=164.6

Q ss_pred             CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcC-CCCCCCchHHHhHHHHH
Q psy18111         10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR-GPFQLPPHIFAIAGSAY   88 (186)
Q Consensus        10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~-~~~~~~PHi~~~a~~a~   88 (186)
                      +.+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+|+|+++++..|++. ...++|||||++|+.||
T Consensus        95 ~~~~~Dl~~L~~lnE~~vL~nL~~Ry~~~~IYTy~G~iLIavNPyk~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay  174 (821)
T PTZ00014         95 PMTYGDIGLLPHTNIPCVLDFLKHRYLKNQIYTTADPLLVAINPFKDLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRAL  174 (821)
T ss_pred             cCCcchhhhCCCCCHHHHHHHHHHHHcCCCCeeeECCEEEEECCCCCCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHH
Confidence            34689999999999999999999999999999999999999999999999999999999985 46789999999999999


Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      ++|+..+++||||++|||||||||++|.+++||+ ..++. .....++++|+++||||||||||||.+|+||||||||++
T Consensus       175 ~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla-~~~~~-~~~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~  252 (821)
T PTZ00014        175 ENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFA-SSKSG-NMDLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQ  252 (821)
T ss_pred             HHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHH-HhccC-CCcccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEE
Confidence            9999999999999999999999999999999999 55432 223578999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|.|+||+|++||
T Consensus       253 i~F~~~g~i~Ga~I~~YL  270 (821)
T PTZ00014        253 LQLGEEGGIRYGSIVAFL  270 (821)
T ss_pred             EEEcCCCcEeeEEEEEEe
Confidence            999999999999999996

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=100.00  E-value=3.5e-60  Score=436.88  Aligned_cols=174  Identities=44%  Similarity=0.703  Sum_probs=166.4

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      |+|||+.|+++||++||++|++||.+++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.|
T Consensus         1 g~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m   80 (691)
T cd01380           1 GKDDLTNLSYLHEPAVLHNLRVRFIQKQIYTYSGIVLVAINPYARLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQM   80 (691)
T ss_pred             CchhhhhCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEeCCCCCCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC---CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG---PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~---~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      ++.+++||||++|||||||||++|.|++||+ ..++..   .....++++|++++|||||||||||.+|+||||||||++
T Consensus        81 ~~~~~~QsIiiSGESGaGKTes~K~i~~yLa-~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~  159 (691)
T cd01380          81 TRDEKNQSIIVSGESGAGKTVSAKYIMRYFA-SVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ  159 (691)
T ss_pred             HhcCCCceEEEEcCCCCCchHHHHHHHHHHH-HhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence            9999999999999999999999999999999 766532   224578999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|+|+||+|.+||
T Consensus       160 l~f~~~g~i~Ga~i~~yL  177 (691)
T cd01380         160 ILFDKRGRIIGANMRTYL  177 (691)
T ss_pred             EEECCCCCEEEEEEEEee
Confidence            999999999999999996

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=6e-60  Score=435.48  Aligned_cols=176  Identities=41%  Similarity=0.683  Sum_probs=167.4

Q ss_pred             CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      ..+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++...++|||||++|++||+
T Consensus         4 ~~~v~Dl~~L~~l~E~~il~~L~~Ry~~~~iYT~~G~iLIavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~   83 (693)
T cd01377           4 FDKVEDMAELTHLNEASVLHNLRERYYSDLIYTYSGLFCVAVNPYKRLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYR   83 (693)
T ss_pred             ccCcchhhhCCcCCHHHHHHHHHHHHhcCCcEEeecceeEeecCCccCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC-------chhhHHHHHhhccchHHhhcCccccCCCCCCC
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP-------VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSR  162 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~-------~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR  162 (186)
                      .|+..+++||||++|||||||||++|.|++||+ ..++...       ....++++|++++|||||||||||.+|+||||
T Consensus        84 ~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa-~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSR  162 (693)
T cd01377          84 SMLQDRENQSILITGESGAGKTENTKKVIQYLA-SVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSR  162 (693)
T ss_pred             HHHhcCCCceEEEEcCCCCCchHHHHHHHHHHH-hhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccc
Confidence            999999999999999999999999999999999 6665322       24578999999999999999999999999999


Q ss_pred             ceeeEEEEEcCCCCeeeeEecccC
Q psy18111        163 FGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       163 ~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ||||++|+|+.+|+|+||+|.+||
T Consensus       163 FGK~i~l~f~~~g~i~Ga~i~~yL  186 (693)
T cd01377         163 FGKFIRIHFGNTGKIAGADIETYL  186 (693)
T ss_pred             cceeEEEEECCCCCEEEEEEEEEe
Confidence            999999999999999999999996

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=1.1e-59  Score=432.26  Aligned_cols=171  Identities=45%  Similarity=0.811  Sum_probs=164.8

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      ++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++...++|||||++|+.||+.|
T Consensus         1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m   80 (671)
T cd01381           1 GVEDMITLGDLHEAGILRNLLIRYKKKLIYTYTGSILVAVNPYQILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNM   80 (671)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHccCCCeEeeCCEEEEeCCCccCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF  171 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f  171 (186)
                      +..+++||||++|||||||||++|.+++||+ ..++.   ...++++|++++|||||||||||.+|+||||||||++|+|
T Consensus        81 ~~~~~~QsIiisGESGaGKTes~K~i~~yLa-~~s~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F  156 (671)
T cd01381          81 QREKKNQCIIISGESGAGKTESTKLILQYLA-AISGK---HSWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF  156 (671)
T ss_pred             HHcCCCceEEEEcCCCCCeehHHHHHHHHHH-HhcCC---CCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEE
Confidence            9999999999999999999999999999999 76653   2458899999999999999999999999999999999999


Q ss_pred             cCCCCeeeeEecccC
Q psy18111        172 DYKGDPLGAHITNCK  186 (186)
Q Consensus       172 ~~~g~i~ga~i~~y~  186 (186)
                      +.+|+|+||+|.+||
T Consensus       157 ~~~g~i~Ga~i~~yL  171 (671)
T cd01381         157 NKRGAIEGAKIEQYL  171 (671)
T ss_pred             CCCCcEEEEEEEEEe
Confidence            999999999999996

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=1.6e-59  Score=431.52  Aligned_cols=174  Identities=51%  Similarity=0.932  Sum_probs=167.6

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      +++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|+.||+.|
T Consensus         1 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m   80 (674)
T cd01378           1 GVDDLVLLSKISEEAIVENLKKRFQNDLIYTYIGPVLISVNPFKQLPIYTDETIELYKGKSRYELPPHIYALADNAYRSM   80 (674)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHhcCCCeeccCCcEEEEcCCCCCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF  171 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f  171 (186)
                      +..+++||||++|||||||||++|.+++||+ ..+++......+++++++++|||||||||||.+|+||||||||++|+|
T Consensus        81 ~~~~~~QsIiisGESGaGKTe~~K~il~yL~-~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f  159 (674)
T cd01378          81 KSENENQCVIISGESGAGKTEAAKKIMQYIA-AVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQF  159 (674)
T ss_pred             HHcCCCceEEEEcCCCCCcchHHHHHHHHHH-hcCCCCCccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEEE
Confidence            9999999999999999999999999999999 777655445678999999999999999999999999999999999999


Q ss_pred             cCCCCeeeeEecccC
Q psy18111        172 DYKGDPLGAHITNCK  186 (186)
Q Consensus       172 ~~~g~i~ga~i~~y~  186 (186)
                      +.+|.++||+|++||
T Consensus       160 ~~~g~i~ga~i~~yL  174 (674)
T cd01378         160 DFKGDPVGGKITNYL  174 (674)
T ss_pred             CCCCCEeeEEEEEee
Confidence            999999999999996

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=5.9e-59  Score=427.27  Aligned_cols=175  Identities=41%  Similarity=0.681  Sum_probs=166.4

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      .+++||+.|+++||++||++|++||.+++||||+|++||+||||+++| +|+++.+..|+++...++|||||++|++||+
T Consensus         1 ~gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~   80 (674)
T cd01384           1 EGVDDMTKLSYLHEPGVLQNLKTRYELNEIYTYTGNILIAVNPFQRLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYR   80 (674)
T ss_pred             CCcchHhhCCCCCHHHHHHHHHHHHhcCCCeeeECCEEEEECCCCcCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHH
Confidence            379999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC-CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG-PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~-~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      .|+..+++||||++|||||||||++|.+++||+ ..++.. .....++++|++++|||||||||||.+|+||||||||++
T Consensus        81 ~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa-~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~  159 (674)
T cd01384          81 AMINEGKSQSILVSGESGAGKTETTKMLMRYLA-YMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE  159 (674)
T ss_pred             HHHHcCCCceEEEECCCCCCchhHHHHHHHHHH-hhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEE
Confidence            999999999999999999999999999999999 665432 233568999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|+|+||+|.+||
T Consensus       160 l~f~~~g~i~Ga~i~~yL  177 (674)
T cd01384         160 IQFDDYGRISGAAIRTYL  177 (674)
T ss_pred             EEECCCCcEEEEEEEEEe
Confidence            999999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=1.1e-58  Score=428.26  Aligned_cols=175  Identities=41%  Similarity=0.744  Sum_probs=167.4

Q ss_pred             CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111          8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGS   86 (186)
Q Consensus         8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~   86 (186)
                      |.+.++|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+| +|+++++..|+++...++|||||++|+.
T Consensus         1 ~~~~~v~Dl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~   80 (717)
T cd01382           1 DSKKDVEDNCSLMYLNEATLLNNIRVRYSKDKIYTYVANILIAVNPYFDIPKLYSSDTIKKYQGKSLGTLPPHVFAIADK   80 (717)
T ss_pred             CCCCCcchhhcCCCCCHHHHHHHHHHHHcCCCCEEeECCEEEEECCCCcccccCCHHHHHHhhCCCcCcCCCcHHHHHHH
Confidence            456789999999999999999999999999999999999999999999997 9999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY  166 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~  166 (186)
                      ||+.|++.+++||||++|||||||||++|.+++||+ ..++++   ..++++|++++|||||||||||.+|+||||||||
T Consensus        81 Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa-~~~~~~---~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~  156 (717)
T cd01382          81 AYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLT-ESYGSG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF  156 (717)
T ss_pred             HHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHH-hhccCC---ccHHHHHHHHHHHHHHhhccccCCCCCcccceeE
Confidence            999999999999999999999999999999999999 665432   5688999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeeeeEecccC
Q psy18111        167 LDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       167 ~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ++|+|+.+|+|+||+|.+||
T Consensus       157 ~~l~f~~~g~i~Ga~i~~yL  176 (717)
T cd01382         157 VEIHFNEKNSVVGGFVSHYL  176 (717)
T ss_pred             EEEEECCCCCEeEEEEEEEe
Confidence            99999999999999999996

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=100.00  E-value=1.5e-58  Score=428.78  Aligned_cols=172  Identities=33%  Similarity=0.518  Sum_probs=162.5

Q ss_pred             CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111         13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR   92 (186)
Q Consensus        13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~   92 (186)
                      +|||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++++..|+++...++|||||++|+.||+.|+
T Consensus         2 v~Dl~~L~~l~E~~il~~L~~Ry~~~~IYT~~G~iLIavNPyk~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~   81 (767)
T cd01386           2 VEDLASLVYLNESSVLHTLRQRYAANLIHTCAGPDLLVLNPMAPLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALL   81 (767)
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCeEEEECCCCCCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEEc
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD  172 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f~  172 (186)
                      ..+++||||++|||||||||++|.+++||+ ..++..... ...++|.+++|||||||||||.+|+||||||||++|+|+
T Consensus        82 ~~~~~QsIiiSGESGAGKTe~tK~i~~yla-~~~~~~~~~-~~~e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~  159 (767)
T cd01386          82 ETRRDQSIIFLGRSGAGKTTSCKHALEYLA-LAAGSVDGR-VSVEKVRALFTILEAFGNVSTALNGNATRFTQILSLDFD  159 (767)
T ss_pred             HcCCCceEEEecCCCCCcHHHHHHHHHHHH-hccCCCCcc-cHHHHHHhhchHHHHhhccCcCCCCCcCcceeEEEEEEC
Confidence            999999999999999999999999999999 776543222 223689999999999999999999999999999999999


Q ss_pred             CCCCeeeeEecccC
Q psy18111        173 YKGDPLGAHITNCK  186 (186)
Q Consensus       173 ~~g~i~ga~i~~y~  186 (186)
                      .+|.|+||+|.+||
T Consensus       160 ~~g~i~Ga~i~~yL  173 (767)
T cd01386         160 QTGQIASASLQTML  173 (767)
T ss_pred             CCCcEeEEEEEEEe
Confidence            99999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=4.4e-58  Score=421.93  Aligned_cols=171  Identities=46%  Similarity=0.758  Sum_probs=163.3

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      +++||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.|
T Consensus         2 gv~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m   81 (677)
T cd01387           2 GVEDMTQLEDLQETTVLWNLKLRFERNLIYTYIGSILVSVNPYKMFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKM   81 (677)
T ss_pred             CcchhhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF  171 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f  171 (186)
                      +..+++||||++|||||||||++|.+++||+ ..++.+  ...++++|++++|||||||||||++|+||||||||++|+|
T Consensus        82 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~--~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f  158 (677)
T cd01387          82 LDAKQNQCVIISGESGSGKTEATKLILRYLA-AMNQGG--SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFL  158 (677)
T ss_pred             HhcCCCceEEEEcCCCCCeehHHHHHHHHHH-hhcCCC--cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEEe
Confidence            9999999999999999999999999999999 665432  3468899999999999999999999999999999999999


Q ss_pred             cCCCCeeeeEecccC
Q psy18111        172 DYKGDPLGAHITNCK  186 (186)
Q Consensus       172 ~~~g~i~ga~i~~y~  186 (186)
                      + +|.|+||+|.+||
T Consensus       159 ~-~g~i~Ga~i~~yL  172 (677)
T cd01387         159 E-GGVIVGAITSQYL  172 (677)
T ss_pred             c-CCcEeEEEEEEEe
Confidence            6 7999999999996

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=9.5e-58  Score=419.47  Aligned_cols=173  Identities=41%  Similarity=0.668  Sum_probs=162.8

Q ss_pred             CCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111          7 VDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGS   86 (186)
Q Consensus         7 ~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~   86 (186)
                      ++...+++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++.  ..|||||++|++
T Consensus         4 p~~~~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~ly~~~~~~~y~~~~--~~~PHifaiA~~   81 (677)
T cd01383           4 PDILDGVDDLMQLSYLNEPSVLYNLQYRYSQDLIYTKAGPVLVAVNPFKEVPLYGNDYIEAYRKKS--NDSPHVYAIADT   81 (677)
T ss_pred             cccccCcchhhhCCCCCHHHHHHHHHHHHcCCCCeEEECCEEEEEcCCcCCCCCCHHHHHHhhCCC--CCCCCHHHHHHH
Confidence            344568999999999999999999999999999999999999999999999999999999998754  469999999999


Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY  166 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~  166 (186)
                      ||+.|+..+++||||++|||||||||++|.+++||+ ..++.    ..++++|++++|||||||||||.+|+||||||||
T Consensus        82 Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa-~~~~~----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~  156 (677)
T cd01383          82 AYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLA-SLGGG----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKL  156 (677)
T ss_pred             HHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHH-hhCCC----CcHHHHHHHHHHHHHHhhccccCCCCCcCcccee
Confidence            999999999999999999999999999999999999 66542    2688999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeeeeEecccC
Q psy18111        167 LDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       167 ~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ++|+|+.+|+++||+|.+||
T Consensus       157 ~~l~f~~~g~i~ga~i~~yL  176 (677)
T cd01383         157 IEIHFSETGKISGAKIQTFL  176 (677)
T ss_pred             EEEEECCCCcEEEEEEEEEe
Confidence            99999999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>smart00242 MYSc Myosin

Probab=100.00  E-value=1.2e-57  Score=420.02  Aligned_cols=178  Identities=47%  Similarity=0.788  Sum_probs=169.5

Q ss_pred             CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHH
Q psy18111          8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSA   87 (186)
Q Consensus         8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a   87 (186)
                      ....+++||+.|+++||++||++|++||.+++||||+|++||+||||+++++|+++++..|+++...++|||||++|++|
T Consensus         3 ~~~~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHifavA~~A   82 (677)
T smart00242        3 PKFEGVEDLVLLTYLNEPAVLHNLKKRYLKDLIYTYIGLVLVAVNPYKQLPIYTDEVIKKYRGKSRGELPPHVFAIADNA   82 (677)
T ss_pred             cccCCcchhhcCCCCCHHHHHHHHHHHHhhCCccccccceEEEecCCccCCCCCHHHHHHccCCCCCCCCCCHHHHHHHH
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL  167 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~  167 (186)
                      |+.|+..+++||||++|||||||||++|.+++||+ ..+++......++++|.+++|||||||||||.+|+||||||||+
T Consensus        83 y~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~  161 (677)
T smart00242       83 YRNMLNDKENQSIIISGESGAGKTENTKKIMQYLA-AVSGSNTSVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFI  161 (677)
T ss_pred             HHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHH-hhcCCCCccccHHHHHHHHHHHHHHhhccccCCCCCccchheeE
Confidence            99999999999999999999999999999999999 77665434567899999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeeEecccC
Q psy18111        168 DIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       168 ~l~f~~~g~i~ga~i~~y~  186 (186)
                      +|+|+.+|+|+||+|.+||
T Consensus       162 ~l~f~~~g~i~ga~i~~yL  180 (677)
T smart00242      162 EIHFDAKGKIVGAKIETYL  180 (677)
T ss_pred             EEEECCCCcEeEEEEEEee
Confidence            9999999999999999996

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>cd00124 MYSc Myosin motor domain

Probab=100.00  E-value=2.7e-57  Score=418.04  Aligned_cols=172  Identities=46%  Similarity=0.779  Sum_probs=165.3

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      +++||+.|+++||++||++|+.||.+++||||+|++||+||||+.+++|+++.+..|+++...++|||||++|++||+.|
T Consensus         1 ~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNPy~~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m   80 (679)
T cd00124           1 GVDDLASLPHLNEATVLNNLRQRYKKDLIYTYAGPILIAVNPYKDLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNM   80 (679)
T ss_pred             CCcchhhCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF  171 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f  171 (186)
                      +..+++||||++|||||||||++|.+++||+ ..++..  ...++++|.+++|||||||||||.+|+||||||||++|+|
T Consensus        81 ~~~~~~QsIiisGESGaGKTe~~k~il~yl~-~~~~~~--~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f  157 (679)
T cd00124          81 LRDRRNQSIIISGESGAGKTENTKLIMKYLA-SLAGSN--DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQF  157 (679)
T ss_pred             HhcCCCceEEEecCCCCCchHHHHHHHHHHH-hccCCC--cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEEE
Confidence            9999999999999999999999999999999 766532  3568999999999999999999999999999999999999


Q ss_pred             cCCCCeeeeEecccC
Q psy18111        172 DYKGDPLGAHITNCK  186 (186)
Q Consensus       172 ~~~g~i~ga~i~~y~  186 (186)
                      +.+|+|+||+|.+||
T Consensus       158 ~~~g~i~ga~i~~yL  172 (679)
T cd00124         158 DETGKISGAKITTYL  172 (679)
T ss_pred             CCCCcEeEEEEEEEE
Confidence            999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=3.3e-57  Score=414.54  Aligned_cols=171  Identities=43%  Similarity=0.737  Sum_probs=163.5

Q ss_pred             CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111         13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR   92 (186)
Q Consensus        13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~   92 (186)
                      +|||+.|+++||++||++|+.||..++||||+|++||+||||+.+++|+++++..|+++.+.+.|||+|++|+.||+.|+
T Consensus         2 ~~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~   81 (653)
T cd01379           2 MDDLATLEVLDEDTIVEQLQKRYETNQIYTYVGDILIAVNPFQQLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLV   81 (653)
T ss_pred             cchhhcCCCCCHHHHHHHHHHHHcCCCCeEeECCEEEEECCCCCCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEEEc
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD  172 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~f~  172 (186)
                      ..+++|||+++|||||||||++|.+++||+ ..++.  ....++++|++++|||||||||||.+|+||||||||++|+|+
T Consensus        82 ~~~~~QsIiisGESGsGKTet~K~l~~yL~-~~~~~--~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~  158 (653)
T cd01379          82 TYNQDQCIVISGESGSGKTESAHLLVQQLT-VLGKA--NNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFT  158 (653)
T ss_pred             hcCCCceEEEecCCCCCchHHHHHHHHHHH-HhcCC--CCccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEEEC
Confidence            999999999999999999999999999999 55432  234688999999999999999999999999999999999999


Q ss_pred             CCCCeeeeEecccC
Q psy18111        173 YKGDPLGAHITNCK  186 (186)
Q Consensus       173 ~~g~i~ga~i~~y~  186 (186)
                      .+|+|+||+|++||
T Consensus       159 ~~g~i~Ga~i~~yL  172 (653)
T cd01379         159 RSGAVVGARISEYL  172 (653)
T ss_pred             CCCcEEEEEEEEEe
Confidence            99999999999996

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>KOG0164|consensus

Probab=100.00  E-value=1.2e-57  Score=406.80  Aligned_cols=182  Identities=52%  Similarity=0.909  Sum_probs=174.6

Q ss_pred             CCCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHh
Q psy18111          4 PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAI   83 (186)
Q Consensus         4 ~~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~   83 (186)
                      ++..++..|++|++.|+.+++++++.|||.||+++.||||+|+++|+||||+.++||+++++.+|++....+.|||+|++
T Consensus         1 ~~~~~~~~Gv~DfVLle~~~~~~f~~NLrlRf~~g~IYTyIGeV~VsvNPYrql~IYg~~ti~kYkgre~yE~~PHlfAi   80 (1001)
T KOG0164|consen    1 ALTARDEVGVQDFVLLETVSEESFMENLRLRFENGRIYTYIGEVLVSVNPYRQLNIYGPETIEKYKGREFYERPPHLFAI   80 (1001)
T ss_pred             CCccccccCceeeEeeccccHHHHHHHHHHHHhcCceEEEEccEEEEecchhhcCccCHHHHHHhCCeeecccCchHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCc--hhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111         84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV--LNAVREKLKHIGPLLEAFGNAQTLKNDNSS  161 (186)
Q Consensus        84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~--~~~~~~~i~~~~~iLeaFgnakT~~N~nSS  161 (186)
                      |+.||+.|.+..++|||+|||||||||||++|.||+|++ .+++.+..  ...+++.++++|+||||||||||.+|+|||
T Consensus        81 ad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiA-Avtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSS  159 (1001)
T KOG0164|consen   81 ADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIA-AVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSS  159 (1001)
T ss_pred             HHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHH-HhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchh
Confidence            999999999999999999999999999999999999999 77765443  478899999999999999999999999999


Q ss_pred             CceeeEEEEEcCCCCeeeeEecccC
Q psy18111        162 RFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       162 R~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ||||||+|+||.+|..+||+|.+||
T Consensus       160 RFGKYMDInFDfKGdPvGG~I~nYL  184 (1001)
T KOG0164|consen  160 RFGKYMDINFDFKGDPVGGHITNYL  184 (1001)
T ss_pred             hhhcceeeeccccCCcccchHhHHH
Confidence            9999999999999999999999996

>KOG0161|consensus

Probab=100.00  E-value=1.7e-57  Score=443.71  Aligned_cols=174  Identities=41%  Similarity=0.707  Sum_probs=166.3

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      .+|||+.|++|||++|||||++||.+++||||.|.+||+||||+++|+|+++++..|+++++.++|||||+||+.||+.|
T Consensus        83 k~eDMa~LT~lNeasVL~nL~~RY~~~lIyTYSGLFcVviNPyk~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~m  162 (1930)
T KOG0161|consen   83 KVEDMAELTFLNEASVLHNLKQRYASDLIYTYSGLFCVVINPYKRLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNM  162 (1930)
T ss_pred             ccccHHHhcccChHHHHhhHHHHHHhChHHHcccceeEEecCCcCCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC----CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG----PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL  167 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~----~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~  167 (186)
                      +..++||+|+++||||||||+++|+|++||+ .+++.+    +....++++|.++||||||||||+|++|+|||||||||
T Consensus       163 L~~renQSiLiTGESGAGKTeNTKkVIqyla-~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfi  241 (1930)
T KOG0161|consen  163 LQDRENQSILITGESGAGKTENTKKVIQYLA-SVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFI  241 (1930)
T ss_pred             HhcCCCceEeeecCCCCCcchhHHHHHHHHH-HHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeE
Confidence            9999999999999999999999999999999 766532    11157889999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeeEecccC
Q psy18111        168 DIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       168 ~l~f~~~g~i~ga~i~~y~  186 (186)
                      +|+|+.+|+|+||+|++||
T Consensus       242 rI~F~~~G~i~~a~Ie~yL  260 (1930)
T KOG0161|consen  242 RIHFDATGKIAGADIETYL  260 (1930)
T ss_pred             EEecCCCCccchhhHHHHH
Confidence            9999999999999999996

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=5.7e-57  Score=417.13  Aligned_cols=173  Identities=45%  Similarity=0.790  Sum_probs=156.4

Q ss_pred             CCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHH
Q psy18111         13 AWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLR   92 (186)
Q Consensus        13 ~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~   92 (186)
                      ||||+.|.++||++||++|++||..++||||+|++||+||||+++|+|+++++..|+++...++|||||++|++||+.|+
T Consensus         1 veDl~~l~~l~e~~il~~L~~R~~~~~iyT~~G~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~   80 (689)
T PF00063_consen    1 VEDLASLSHLNEASILHNLRQRYKKDLIYTYIGPILIAVNPYKPLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQML   80 (689)
T ss_dssp             -SBGGGSSS-SHHHHHHHHHHHHHTT--EEEETTEEEEE--SS--STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHH
T ss_pred             CChhhhCCCCCHHHHHHHHHHHHccCCccccCCCeEEEECCchhhhhhhhhhhhhhhhhccccccCccchhhhccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--chhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEE
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIE  170 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~  170 (186)
                      +.+++||||++|||||||||++|++++||+ ..+....  ....+.++|+++++||||||||||.+|+||||||||++|+
T Consensus        81 ~~~~~Q~IiisGeSGsGKTe~~k~il~~L~-~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~  159 (689)
T PF00063_consen   81 RTRQNQSIIISGESGSGKTETSKLILRYLA-SLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQ  159 (689)
T ss_dssp             HHTSEEEEEEEESTTSSHHHHHHHHHHHHH-HHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEE
T ss_pred             ccccccceeeccccccccccchHHHHHHHh-hhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEEE
Confidence            999999999999999999999999999999 7665433  4567899999999999999999999999999999999999


Q ss_pred             EcCCCCeeeeEecccC
Q psy18111        171 FDYKGDPLGAHITNCK  186 (186)
Q Consensus       171 f~~~g~i~ga~i~~y~  186 (186)
                      |+.+|.++||+|++|+
T Consensus       160 f~~~~~~~g~~i~~yl  175 (689)
T PF00063_consen  160 FDDSGQIVGAKIETYL  175 (689)
T ss_dssp             EETTSSEEEEEEEEEE
T ss_pred             ecccccccccceeccc
Confidence            9999999999999985

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0162|consensus

Probab=100.00  E-value=2.3e-55  Score=392.62  Aligned_cols=177  Identities=42%  Similarity=0.768  Sum_probs=173.2

Q ss_pred             CCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHH
Q psy18111          9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAY   88 (186)
Q Consensus         9 ~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~   88 (186)
                      ..++++||+.|+.++|++|..||+.||+++.||||+|.+||+||||+++|+|+++.+..|++....+.|||||++|++.|
T Consensus        16 k~vGVdDm~LLsKiteesI~eNLkkRf~n~~IfTYIG~VLISVNPFk~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY   95 (1106)
T KOG0162|consen   16 KHVGVDDMVLLSKITEESINENLKKRFMNGYIFTYIGHVLISVNPFKQMPYFTEKEMELYQGAAQYENPPHIYALADNMY   95 (1106)
T ss_pred             eeccccceeehhhccHHHHHHHHHHHhhcCceEEEeeeEEEeecchhccccchHHHHHHhhchhhccCCchhhhhHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      ++|...+++||||||||||+|||+++|.||+|++ .+++.+.+.+.+++-|+++||+|||||||||++|+||||||||++
T Consensus        96 ~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs-~vS~~g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~E  174 (1106)
T KOG0162|consen   96 RNMKIDNENQCVIISGESGAGKTVAAKRIMQYIS-RVSGGGEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLE  174 (1106)
T ss_pred             HHhhhccccceEEEecCCCCCchHHHHHHHHHHH-HhccCCcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEE
Confidence            9999999999999999999999999999999999 888888889999999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+..|..+||+|.+||
T Consensus       175 i~Fs~ggeP~ggkisNfL  192 (1106)
T KOG0162|consen  175 IQFSRGGEPDGGKISNFL  192 (1106)
T ss_pred             EEecCCCCcCcchhhHHH
Confidence            999999999999999996

>KOG0163|consensus

Probab=100.00  E-value=2.2e-53  Score=380.88  Aligned_cols=178  Identities=44%  Similarity=0.739  Sum_probs=169.5

Q ss_pred             CCCCCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHh
Q psy18111          5 LVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAI   83 (186)
Q Consensus         5 ~~~~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~   83 (186)
                      -+.|.+..+||=|.|-+|||+.+|+|++-||.++.||||+.++||+||||+.++ +|+++.+..|+++..+.+|||||+|
T Consensus        51 ~eeD~~k~veDNC~Lm~LNEATlL~Nik~RY~k~kIYtYVANILIavNPY~~I~~lYs~etIK~Y~GkSLGq~~PHvFAI  130 (1259)
T KOG0163|consen   51 CEEDSPKDVEDNCELMHLNEATLLNNIKLRYYKDKIYTYVANILIAVNPYQEIDGLYSPETIKEYRGKSLGQLPPHVFAI  130 (1259)
T ss_pred             cccccccccccccceeeccHHHHhhhhhhhhccCchhhhhhhhheeccchhhcccccCHHHHHHhcCCcccCCCCceeee
Confidence            356778899999999999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCc
Q psy18111         84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRF  163 (186)
Q Consensus        84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~  163 (186)
                      |+.||+.|...+.+|+||+|||||+||||+.|.+++||+ ..-|   ....|.++|+.+||||||||||||.+|+|||||
T Consensus       131 ADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLc-es~g---sag~Iq~rileaNPiLEAFGNAKT~RNNNSSRF  206 (1259)
T KOG0163|consen  131 ADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLC-ESWG---SAGPIQTRILEANPILEAFGNAKTLRNNNSSRF  206 (1259)
T ss_pred             chHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHH-hccC---CCCcHHHHHhccChHHHHhccchhhccCChhhc
Confidence            999999999999999999999999999999999999999 3322   256789999999999999999999999999999


Q ss_pred             eeeEEEEEcCCCCeeeeEecccC
Q psy18111        164 GKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       164 gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||++|||+.+|.++||-|.+||
T Consensus       207 GKFveiHf~dk~~VvGGyvSHYL  229 (1259)
T KOG0163|consen  207 GKFVEIHFDDKGQVVGGYVSHYL  229 (1259)
T ss_pred             cceEEEEEcCCCceechhhhHHH
Confidence            99999999999999999999996

>KOG0160|consensus

Probab=100.00  E-value=1.7e-47  Score=353.00  Aligned_cols=173  Identities=42%  Similarity=0.671  Sum_probs=166.4

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      ++++||..|++++|++||++|+.||..+.||||.|.+||+||||+.+| +|+++.+..|+ ....++.||+|++|+.||+
T Consensus         8 ~~~dDlt~lsyl~epaVL~~L~~Ry~~~~IYty~G~vLiAiNPf~~~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~   86 (862)
T KOG0160|consen    8 MGVDDLTTLSYLHEPAVLHNLAKRYEQNQIYTYKGIVLIAINPFKRLPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYR   86 (862)
T ss_pred             CCccccccCCccCcHHHHHHHHHhhhhcccchhhceeeeeeccccccchhccHHHHHhhc-ccccccCcchhhHHHHHHH
Confidence            789999999999999999999999999999999999999999999999 99999999999 7788999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEE
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDI  169 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l  169 (186)
                      .|.....+|+||++||||||||+++|.+++||+ .+.+. .....++++++++|||+||||||||.+|+||||||||++|
T Consensus        87 ~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla-~v~~~-~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei  164 (862)
T KOG0160|consen   87 DMTPDGVNQSIIVSGESGAGKTETAKYLMEYLA-SVGGS-VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEI  164 (862)
T ss_pred             HhhhccCCceeeeeCCCCCchhHHHHHHHHHHH-HHhcc-chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHH
Confidence            999999999999999999999999999999999 77665 3456899999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeeEecccC
Q psy18111        170 EFDYKGDPLGAHITNCK  186 (186)
Q Consensus       170 ~f~~~g~i~ga~i~~y~  186 (186)
                      +|+..|+|.||+|.+||
T Consensus       165 ~Fd~~~~I~GA~~~TYL  181 (862)
T KOG0160|consen  165 TFDQQGRISGAKIRTYL  181 (862)
T ss_pred             hhhhhcccccceeeeEE
Confidence            99999999999999996

>KOG4229|consensus

Probab=100.00  E-value=2.5e-39  Score=304.78  Aligned_cols=176  Identities=42%  Similarity=0.683  Sum_probs=166.8

Q ss_pred             CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111          8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGS   86 (186)
Q Consensus         8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~   86 (186)
                      ....+++||+.|..++|+.++.+|..||..+.||||.|.+|++||||+.++ +|..+....|.+..+++.|||||++|+.
T Consensus        58 ~~~~~~~Dl~~l~~l~e~~~~~nl~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~  137 (1062)
T KOG4229|consen   58 PQVEDVEDLAQLEDLSEATILENLLVRYKRNPIYEYLGSILVALNPLQPIPFLYLPRFSKLYSGKPLGEDPPHIFAIADL  137 (1062)
T ss_pred             cccccHHHHhhccccchhhhhHHHHHHHccCCceeeechhhhhcCccccccccccHHhhccccccccCCCCcchhhhhhh
Confidence            345689999999999999999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY  166 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~  166 (186)
                      ||++|++...+|||+++||||||||+.+++++++|+ .++.  .....++.+|+.++++||+||||+|.+|+||||||||
T Consensus       138 ~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls-~Lsq--~~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~  214 (1062)
T KOG4229|consen  138 AYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLS-ILSQ--GNNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKY  214 (1062)
T ss_pred             HHHhhhhhccceeEEEecccCCCCchhhHHHHHHHH-HHhc--CCCCchhhhhhcchHHHHHhcccCCcccCchhhhhhe
Confidence            999999999999999999999999999999999999 7762  2345678899999999999999999999999999999


Q ss_pred             EEEEEcCCCCeeeeEecccC
Q psy18111        167 LDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       167 ~~l~f~~~g~i~ga~i~~y~  186 (186)
                      +++.|..+|.+.||+|+.||
T Consensus       215 i~~~~~~~g~i~Gaki~~yl  234 (1062)
T KOG4229|consen  215 IKVNFRKTGIIEGAKIVEYL  234 (1062)
T ss_pred             EEeccccCCCCCcchHHHHH
Confidence            99999999999999999885

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=98.86  E-value=3.4e-09  Score=83.81  Aligned_cols=88  Identities=25%  Similarity=0.288  Sum_probs=63.9

Q ss_pred             HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhc-CccccCCC
Q psy18111         80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFG-NAQTLKND  158 (186)
Q Consensus        80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFg-nakT~~N~  158 (186)
                      ||.....++..++ .+.++||+..|++|||||++..--.       ...+ -.....+.+.+.....+++. ++.|..|.
T Consensus         8 vf~~~~~~v~~~~-~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~G-iip~~~~~~~~ll~~g~~~R~~~~t~~N~   78 (186)
T cd01363           8 VFRDVGPLLQSAL-DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAG-IIPRTVTDVIDLMDKGNANRTTAATAMNE   78 (186)
T ss_pred             HHHHHHHHHHHHh-CCcceeEEEECCCCCcceEecCCCC-------CCCC-cchHHHHHHHHHHhhccccccccccCCCC
Confidence            7887778888887 4699999999999999998732100       0000 11122223566666777888 89999999


Q ss_pred             CCCCceeeEEEEEcCCCC
Q psy18111        159 NSSRFGKYLDIEFDYKGD  176 (186)
Q Consensus       159 nSSR~gk~~~l~f~~~g~  176 (186)
                      +|||+..+++|++.....
T Consensus        79 ~SSRsH~i~~i~v~~~~~   96 (186)
T cd01363          79 HSSRSHSVFRIHFGGKNA   96 (186)
T ss_pred             ccCcccEEEEEEEEEeec
Confidence            999999999999976443

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.07  E-value=0.00049  Score=49.67  Aligned_cols=24  Identities=38%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+.+.+-
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~   24 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLG   24 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHC
Confidence            589999999999999999999754

...

>KOG0925|consensus

Probab=96.92  E-value=0.0011  Score=59.70  Aligned_cols=62  Identities=27%  Similarity=0.431  Sum_probs=42.3

Q ss_pred             eCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHH-HHHHHH
Q psy18111         51 VNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA-SMVVYF  120 (186)
Q Consensus        51 vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~-k~il~~  120 (186)
                      +|||...| |++...+.++.  +.++|-+-+     -+.-|-.-.++|+||+.||+|||||+-. +-++.|
T Consensus        24 ~Npf~~~p-~s~rY~~ilk~--R~~LPvw~~-----k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~   86 (699)
T KOG0925|consen   24 INPFNGKP-YSQRYYDILKK--RRELPVWEQ-----KEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY   86 (699)
T ss_pred             cCCCCCCc-CcHHHHHHHHH--HhcCchHHh-----HHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH
Confidence            99999887 67766665543  335554433     2334555679999999999999999744 444444

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=96.69  E-value=0.0014  Score=47.76  Aligned_cols=28  Identities=25%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..++++.|++|+|||..++.+.+-+.
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            3567899999999999999999999876

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.69  E-value=0.0031  Score=45.51  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......+++.|++|+|||+.++.+.+.+.
T Consensus        16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          16 LPPPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            33567899999999999999999999874

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=96.66  E-value=0.0015  Score=47.10  Aligned_cols=22  Identities=41%  Similarity=0.436  Sum_probs=20.7

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |+|+|.+|||||+.++.+.+.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999985

...

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.57  E-value=0.002  Score=49.89  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|+|.|.||||||+.++.+...+.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999888654

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.49  E-value=0.0028  Score=41.91  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=20.5

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |.++|.+|||||+.++.+.+.|
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999999986

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.45  E-value=0.0021  Score=54.84  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=26.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+.+-|.||||||||++++.+++.+.
T Consensus        29 ~~GE~lgiVGESGsGKS~~~~aim~llp   56 (316)
T COG0444          29 KKGEILGIVGESGSGKSVLAKAIMGLLP   56 (316)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence            4778999999999999999999999886

>PRK06762 hypothetical protein; Provisional

Probab=96.44  E-value=0.0031  Score=48.22  Aligned_cols=25  Identities=40%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|+++|.+|||||+.++.+.+.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999999887

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.43  E-value=0.0033  Score=50.08  Aligned_cols=27  Identities=37%  Similarity=0.405  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+...|.|+|.||||||+.++.+.+.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999999987

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.42  E-value=0.0026  Score=45.31  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=24.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+++.|.+|+|||+.++.+.+.+.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC
Confidence            57899999999999999999999877

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK07261 topology modulation protein; Provisional

Probab=96.39  E-value=0.0029  Score=49.19  Aligned_cols=25  Identities=32%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|++.|.+|||||+.++.+.+.+.
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~~   25 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHYN   25 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999987653

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=96.39  E-value=0.0023  Score=49.10  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++.+++.|++|+|||...+.+++.+.
T Consensus        20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~   49 (185)
T PF13191_consen   20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA   49 (185)
T ss_dssp             SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred             HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445678899999999999999999999888

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.37  E-value=0.003  Score=49.92  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.|++.|.||||||+.++.+.+.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            356789999999999999999999976

>PRK05541 adenylylsulfate kinase; Provisional

Probab=96.33  E-value=0.003  Score=48.86  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++..|++.|.+|||||+.++.+.+.|.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4566899999999999999999999886

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=96.32  E-value=0.0034  Score=45.40  Aligned_cols=23  Identities=30%  Similarity=0.641  Sum_probs=21.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|++|+|||+.++.+.+++.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999876

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08118 topology modulation protein; Reviewed

Probab=96.30  E-value=0.0037  Score=48.53  Aligned_cols=25  Identities=32%  Similarity=0.388  Sum_probs=22.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|++.|.+|||||+.++.+-+.+-
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999998765

>TIGR00235 udk uridine kinase

Probab=96.30  E-value=0.0041  Score=49.62  Aligned_cols=28  Identities=32%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.|+|.||||||+.++.+.+.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3567788999999999999999998775

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.29  E-value=0.0027  Score=53.06  Aligned_cols=32  Identities=28%  Similarity=0.484  Sum_probs=28.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+...+-+.||||||||+..|.+++.+- ..+|
T Consensus        37 ~~ge~~glVGESG~GKSTlgr~i~~L~~-pt~G   68 (268)
T COG4608          37 KEGETLGLVGESGCGKSTLGRLILGLEE-PTSG   68 (268)
T ss_pred             cCCCEEEEEecCCCCHHHHHHHHHcCcC-CCCc
Confidence            4788999999999999999999999877 5555

>PRK06696 uridine kinase; Validated

Probab=96.28  E-value=0.0071  Score=48.85  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=25.6

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++-.|.|+|.||||||+.++.+.+.|.
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44667899999999999999999999885

>PRK00131 aroK shikimate kinase; Reviewed

Probab=96.26  E-value=0.0044  Score=47.19  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=24.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +++.|++.|.+|||||+.++.+-+.+-
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            567899999999999999999998764

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.22  E-value=0.0045  Score=44.91  Aligned_cols=24  Identities=29%  Similarity=0.516  Sum_probs=21.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      ...+.++|.|+||||||+.++.+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            355889999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.19  E-value=0.0057  Score=47.28  Aligned_cols=26  Identities=35%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-.|.|+|.||||||+.++.+-+.|.
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~   27 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLF   27 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999999987

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=96.19  E-value=0.0039  Score=49.24  Aligned_cols=23  Identities=39%  Similarity=0.528  Sum_probs=21.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.|+|.||||||+.++.+...|.
T Consensus         2 IgI~G~sgSGKTTla~~L~~~L~   24 (194)
T PF00485_consen    2 IGIAGPSGSGKTTLAKRLAQILN   24 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999999987

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=96.19  E-value=0.0051  Score=47.71  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|+++|.||||||+.++.+.+-+.
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            45799999999999999999988653

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.16  E-value=0.012  Score=44.36  Aligned_cols=28  Identities=18%  Similarity=0.326  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|++.|+.|+|||+.+|.+.+.|.
T Consensus        20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4567899999999999999999999876

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.09  E-value=0.0049  Score=48.61  Aligned_cols=22  Identities=41%  Similarity=0.564  Sum_probs=20.5

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |.|+|.+|||||+.++.+.+.+
T Consensus         2 igi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.0042  Score=51.27  Aligned_cols=32  Identities=28%  Similarity=0.461  Sum_probs=27.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+++-|.||||||||+.++.++.+.. ..+|
T Consensus        31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~-p~~G   62 (252)
T COG1124          31 ERGETLGIVGESGSGKSTLARLLAGLEK-PSSG   62 (252)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhcccC-CCCc
Confidence            5889999999999999999999999876 4443

>PRK00889 adenylylsulfate kinase; Provisional

Probab=96.07  E-value=0.0071  Score=46.71  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|++.|.+|||||+.++.+.+.+.
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~   29 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLR   29 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999999999999885

>PRK08233 hypothetical protein; Provisional

Probab=96.05  E-value=0.0057  Score=47.08  Aligned_cols=26  Identities=23%  Similarity=0.318  Sum_probs=23.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|.++|.+|||||+.++.+.+.|.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35688999999999999999999875

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.03  E-value=0.014  Score=46.59  Aligned_cols=35  Identities=29%  Similarity=0.335  Sum_probs=28.0

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+........|++.|++|+|||+.++.+.+++.
T Consensus        29 l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~   63 (226)
T TIGR03420        29 LRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAE   63 (226)
T ss_pred             HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            33433356677899999999999999999998765

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.00  E-value=0.0062  Score=48.41  Aligned_cols=24  Identities=29%  Similarity=0.660  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|.+|||||+..+.+++++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            489999999999999999999886

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=95.96  E-value=0.0065  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+++|++|||||+.++.+.+.+.
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~   24 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLG   24 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            78999999999999999998764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=95.95  E-value=0.012  Score=48.18  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....+++.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        41 QREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3455799999999999999999988754

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06547 hypothetical protein; Provisional

Probab=95.94  E-value=0.015  Score=45.48  Aligned_cols=30  Identities=27%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .......|++.|.||||||+.++.+.+.+-
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~   40 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAARTG   40 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356777899999999999999999988644

>PTZ00301 uridine kinase; Provisional

Probab=95.94  E-value=0.0065  Score=49.09  Aligned_cols=23  Identities=39%  Similarity=0.531  Sum_probs=20.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      -|.|+|.||||||+.++.+.+.+
T Consensus         5 iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          5 VIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEECCCcCCHHHHHHHHHHHH
Confidence            47789999999999999988766

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=95.93  E-value=0.0053  Score=48.11  Aligned_cols=26  Identities=27%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|+|.|.||||||+..+.+...+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            35799999999999999999977643

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=95.88  E-value=0.0066  Score=46.24  Aligned_cols=24  Identities=38%  Similarity=0.558  Sum_probs=21.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|++|||||+.++.+.+.+-
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg   25 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLS   25 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999987544

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=95.88  E-value=0.0057  Score=45.16  Aligned_cols=23  Identities=35%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+++|.+|||||+.++.+.+.+.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC
Confidence            78999999999999999997653

...

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=95.88  E-value=0.018  Score=46.65  Aligned_cols=29  Identities=17%  Similarity=0.368  Sum_probs=26.1

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++..|.|.|.+|||||+.++.+.+.+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~   58 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ   58 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            36677899999999999999999999887

>TIGR03263 guanyl_kin guanylate kinase

Probab=95.87  E-value=0.0055  Score=47.32  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|++.|.+|||||+.++.+.+.+.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCc
Confidence            5699999999999999999998653

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=95.86  E-value=0.007  Score=47.52  Aligned_cols=27  Identities=37%  Similarity=0.623  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|++|||||+..+.++.++.
T Consensus        24 ~g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          24 ARKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456799999999999999999988765

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=95.85  E-value=0.0088  Score=45.88  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=21.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ....|+|+|+||+|||+.+..+++.
T Consensus        13 ~g~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          13 GGIGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            4678999999999999999877774

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK06217 hypothetical protein; Validated

Probab=95.82  E-value=0.008  Score=46.99  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=22.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|+|+|-+|||||+.++.+-+.+-
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3599999999999999999998765

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=95.80  E-value=0.0058  Score=46.55  Aligned_cols=23  Identities=30%  Similarity=0.483  Sum_probs=20.5

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|.+|||||+.++.+.+.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999998764

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=95.79  E-value=0.011  Score=46.87  Aligned_cols=28  Identities=25%  Similarity=0.328  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++..|+++|.+|||||+.++.+.+.|.
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~   49 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALH   49 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4677899999999999999999999875

>PRK08084 DNA replication initiation factor; Provisional

Probab=95.77  E-value=0.022  Score=46.54  Aligned_cols=37  Identities=11%  Similarity=0.145  Sum_probs=28.9

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+....+...+++.|++|+|||+.++.+.+.+.
T Consensus        34 ~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~   70 (235)
T PRK08084         34 AALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELS   70 (235)
T ss_pred             HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4444444455667899999999999999998888766

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.77  E-value=0.014  Score=50.26  Aligned_cols=33  Identities=39%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+...+.  .|+++|.+|||||+..+.++.++.
T Consensus       137 L~~~v~~~~--nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        137 IRSAIDSRL--NIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHHh
Confidence            344444444  599999999999999999999875

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=95.77  E-value=0.0088  Score=46.59  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=20.9

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|+|+.|+|||+..+.+++.+.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~   24 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELK   24 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhh
Confidence            78999999999999999999995

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PF05729 NACHT: NACHT domain

Probab=95.76  E-value=0.01  Score=44.43  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=22.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++|.|+.|+|||+.++.++..+.
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~   25 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLA   25 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHH
Confidence            478999999999999999999888

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=95.75  E-value=0.0088  Score=46.86  Aligned_cols=23  Identities=35%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.++|.||||||+.++.+.+.+.
T Consensus         2 i~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           2 VGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.75  E-value=0.0083  Score=48.64  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=21.1

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |-|.|.+|||||+.++.+...|.
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~   24 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLS   24 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHh
Confidence            67899999999999999999885

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.73  E-value=0.015  Score=48.43  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|+++|++|||||++.+.++.++.
T Consensus        81 GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhhC
Confidence            4699999999999999999999876

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=95.69  E-value=0.0076  Score=45.17  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|+|.||||||+.++.+.+.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999999754

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=95.66  E-value=0.01  Score=45.02  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=21.4

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+++|.+|||||+.++.+.+.+.
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            78999999999999999999884

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=95.66  E-value=0.025  Score=47.91  Aligned_cols=28  Identities=18%  Similarity=0.313  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+..|.|.|.+|||||+.++.+...+.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567788999999999999988877665

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.63  E-value=0.012  Score=45.88  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=22.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|.||+|||++++.+.+++.
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~l~   28 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAELLF   28 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            588999999999999999999988

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=95.60  E-value=0.021  Score=45.22  Aligned_cols=32  Identities=25%  Similarity=0.247  Sum_probs=27.0

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -....++-.|-|+|-||||||+.+..+-+-|.
T Consensus        17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~   48 (197)
T COG0529          17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLF   48 (197)
T ss_pred             HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            34455667899999999999999999999887

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=95.58  E-value=0.012  Score=46.74  Aligned_cols=26  Identities=27%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..-||++|.||+|||+..|.+++-.
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            45679999999999999999999865

>PRK14738 gmk guanylate kinase; Provisional

Probab=95.57  E-value=0.012  Score=47.16  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+..|||+|.||+|||+.++.+.+.
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            46778999999999999999998764

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=95.53  E-value=0.027  Score=47.67  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...........+++.|++|+|||+.++.+.+.+.
T Consensus        28 ~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~   61 (337)
T PRK12402         28 SRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY   61 (337)
T ss_pred             HHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            3344444545799999999999999999999876

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=95.52  E-value=0.016  Score=52.87  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             HHHhcCCCCCCCchHHHhHH--HHHHHHHhhC-CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         66 RAYRTRGPFQLPPHIFAIAG--SAYRWLRDRS-EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        66 ~~y~~~~~~~~~PHi~~~a~--~a~~~~~~~~-~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|+-....++.-|-=.+.+  .+++.+.... ..+.++++|.+|+|||++.+.+.+.+.
T Consensus        11 ~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   11 EKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             hhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45555555555555444443  4555554443 356788899999999999999998766

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.52  E-value=0.016  Score=44.96  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      -+++.++|+|.||+|||+..+.++...
T Consensus        33 l~~k~~vl~G~SGvGKSSLiN~L~~~~   59 (161)
T PF03193_consen   33 LKGKTSVLLGQSGVGKSSLINALLPEA   59 (161)
T ss_dssp             HTTSEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            356899999999999999988888753

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=95.46  E-value=0.0096  Score=51.11  Aligned_cols=32  Identities=31%  Similarity=0.507  Sum_probs=27.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.||||||||+.++.|+..+. ..+|
T Consensus        39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~-p~~G   70 (327)
T PRK11308         39 ERGKTLAVVGESGCGKSTLARLLTMIET-PTGG   70 (327)
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCCC-CCCc
Confidence            4778999999999999999999999766 4333

>PRK14737 gmk guanylate kinase; Provisional

Probab=95.46  E-value=0.015  Score=46.01  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+-.|||+|.||||||+.++.+++.+.
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            456799999999999999999988653

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=95.45  E-value=0.015  Score=45.56  Aligned_cols=26  Identities=31%  Similarity=0.470  Sum_probs=23.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+++.|.||||||+.++.+...+.
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46799999999999999999998765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=95.44  E-value=0.012  Score=49.35  Aligned_cols=31  Identities=39%  Similarity=0.631  Sum_probs=26.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      +...+++.|.||||||++.|+|-+.+. ..+|
T Consensus        26 ~gef~vliGpSGsGKTTtLkMINrLie-pt~G   56 (309)
T COG1125          26 EGEFLVLIGPSGSGKTTTLKMINRLIE-PTSG   56 (309)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhcccC-CCCc
Confidence            445689999999999999999999877 5555

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=95.44  E-value=0.013  Score=45.27  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|++.|.+|||||+.++.+.+.+-
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g   28 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYG   28 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999986543

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=95.42  E-value=0.0095  Score=53.96  Aligned_cols=32  Identities=22%  Similarity=0.396  Sum_probs=27.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.|.+.+.|+||||||+..+.+++++. ...|
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~-p~~G  390 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLLD-PLQG  390 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            6889999999999999999999999876 4433

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=95.41  E-value=0.015  Score=45.25  Aligned_cols=27  Identities=22%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|++.|.+|||||+.++.+.+.+.
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~   29 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcC
Confidence            356799999999999999999988654

>PRK14527 adenylate kinase; Provisional

Probab=95.38  E-value=0.015  Score=45.74  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|++.|.+|||||+.++.+.+.+.
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4678899999999999999999886543

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=95.37  E-value=0.011  Score=52.32  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=27.4

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-++.|++-+.||||||||+..+.+++.+.
T Consensus       309 ~L~~gqTlGlVGESGSGKsTlG~allrL~~  338 (534)
T COG4172         309 TLRRGQTLGLVGESGSGKSTLGLALLRLIP  338 (534)
T ss_pred             EecCCCeEEEEecCCCCcchHHHHHHhhcC
Confidence            446899999999999999999999999877

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=95.37  E-value=0.012  Score=47.20  Aligned_cols=28  Identities=25%  Similarity=0.256  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~   38 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLDA   38 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            4678999999999999999999998765

>PRK04040 adenylate kinase; Provisional

Probab=95.36  E-value=0.016  Score=45.87  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=22.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...|+++|.+|+|||+.++.+.+.+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l   26 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKL   26 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998887

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=95.35  E-value=0.012  Score=47.56  Aligned_cols=32  Identities=22%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.|.|++|||||+..+.+...+. ..+|
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G   60 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER-PTSG   60 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            4788999999999999999999998766 4444

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=95.34  E-value=0.023  Score=48.74  Aligned_cols=34  Identities=24%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.......++.++|+|++|+|||..++.+++.+.
T Consensus        32 ~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~   65 (365)
T TIGR02928        32 RPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE   65 (365)
T ss_pred             HHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3334456778999999999999999999998875

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=95.34  E-value=0.014  Score=41.77  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHHhh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      |.|.|++|.|||..++.+.+.+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~   24 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLK   24 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999998883

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=95.34  E-value=0.013  Score=43.88  Aligned_cols=22  Identities=36%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |+++|.+|||||+.++.+.+.+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc
Confidence            7899999999999999988863

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=95.34  E-value=0.012  Score=50.60  Aligned_cols=28  Identities=32%  Similarity=0.356  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.|+..+.
T Consensus        31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         31 TEGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            4788999999999999999999999764

>PF12846 AAA_10: AAA-like domain

Probab=95.33  E-value=0.016  Score=47.58  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |..+++.|.+|+|||+.++.++..+.
T Consensus         1 n~h~~i~G~tGsGKT~~~~~l~~~~~   26 (304)
T PF12846_consen    1 NPHTLILGKTGSGKTTLLKNLLEQLI   26 (304)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            35689999999999999999998877

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=95.33  E-value=0.013  Score=46.49  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |.++|-||||||+.++.+.+.+
T Consensus         2 i~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           2 VGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7889999999999999999987

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PF13245 AAA_19: Part of AAA domain

Probab=95.32  E-value=0.029  Score=37.91  Aligned_cols=27  Identities=22%  Similarity=0.359  Sum_probs=21.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++...++.|..|+|||++....+.++.
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            566778899999999977777777666

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.32  E-value=0.021  Score=47.21  Aligned_cols=28  Identities=32%  Similarity=0.427  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +....|+++|+.|||||+..+.+++++.
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i~  152 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEIP  152 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred             ccceEEEEECCCccccchHHHHHhhhcc
Confidence            4577899999999999999999999877

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=95.32  E-value=0.016  Score=46.61  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.|...+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          24 PKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            477899999999999999999999987

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PLN03025 replication factor C subunit; Provisional

Probab=95.30  E-value=0.028  Score=47.87  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=29.4

Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+...++-..++|.|.+|+|||+.++.+.+.+.
T Consensus        24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~   59 (319)
T PLN03025         24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL   59 (319)
T ss_pred             HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            345556666667799999999999999999999875

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=95.30  E-value=0.015  Score=45.67  Aligned_cols=26  Identities=19%  Similarity=0.240  Sum_probs=23.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-.|.+.|.||||||+..+.+++.|.
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~   31 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALC   31 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHh
Confidence            34688999999999999999999987

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=95.30  E-value=0.012  Score=46.86  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   53 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGALT   53 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=95.29  E-value=0.039  Score=40.99  Aligned_cols=28  Identities=25%  Similarity=0.404  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +....|++.|+-|||||+.+|.+++.|.
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg   40 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLARALG   40 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5678899999999999999999999886

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=95.28  E-value=0.015  Score=43.44  Aligned_cols=24  Identities=25%  Similarity=0.452  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|.+|||||+.++.+-+.+-
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999988754

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.28  E-value=0.019  Score=49.65  Aligned_cols=27  Identities=30%  Similarity=0.567  Sum_probs=24.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|.+|||||++.+.+++++.
T Consensus       121 ~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       121 PRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            356799999999999999999999876

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=95.28  E-value=0.012  Score=46.82  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   52 (214)
T cd03292          25 SAGEFVFLVGPSGAGKSTLLKLIYKEEL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=95.27  E-value=0.011  Score=53.88  Aligned_cols=28  Identities=32%  Similarity=0.510  Sum_probs=25.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+++-|.||||||||+.+|.++..+.
T Consensus       315 ~~GE~lglVGeSGsGKSTlar~i~gL~~  342 (539)
T COG1123         315 REGETLGLVGESGSGKSTLARILAGLLP  342 (539)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5778899999999999999999999876

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=95.26  E-value=0.012  Score=50.74  Aligned_cols=32  Identities=38%  Similarity=0.532  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|+||||||+..+.|+..+. ..+|
T Consensus        45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~-p~~G   76 (331)
T PRK15079         45 YEGETLGVVGESGCGKSTFARAIIGLVK-ATDG   76 (331)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCC-CCCc
Confidence            5788999999999999999999999776 4444

>PRK04182 cytidylate kinase; Provisional

Probab=95.26  E-value=0.016  Score=44.38  Aligned_cols=24  Identities=38%  Similarity=0.549  Sum_probs=21.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+.+.|-
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg   25 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999987544

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=95.26  E-value=0.014  Score=46.41  Aligned_cols=28  Identities=18%  Similarity=0.459  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   52 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLLG   52 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999998765

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=95.25  E-value=0.013  Score=46.67  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03259          24 EPGEFLALLGPSGCGKTTLLRLIAGLER   51 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=95.25  E-value=0.015  Score=42.69  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3678899999999999999998888765

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=95.24  E-value=0.025  Score=48.80  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+++|.+|||||+..+.++.++.
T Consensus       160 ~~nili~G~tgSGKTTll~aL~~~ip  185 (332)
T PRK13900        160 KKNIIISGGTSTGKTTFTNAALREIP  185 (332)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence            34599999999999999999998766

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=95.24  E-value=0.041  Score=44.23  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....+++.|++|+|||+.++.+.+.+.
T Consensus        40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~   67 (227)
T PRK08903         40 VADRFFYLWGEAGSGRSHLLQALVADAS   67 (227)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999988764

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=95.23  E-value=0.029  Score=47.30  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=22.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-+..+++.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~~lll~G~~G~GKT~la~~l~~~~~   68 (316)
T PHA02544         41 RIPNMLLHSPSPGTGKTTVAKALCNEVG   68 (316)
T ss_pred             CCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            3456677799999999999999988653

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=95.22  E-value=0.012  Score=47.19  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLER   55 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=95.22  E-value=0.012  Score=50.61  Aligned_cols=28  Identities=36%  Similarity=0.510  Sum_probs=25.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.||||||||+..+.|+..+.
T Consensus        40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~   67 (330)
T PRK09473         40 RAGETLGIVGESGSGKSQTAFALMGLLA   67 (330)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            4788999999999999999999999875

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=95.22  E-value=0.017  Score=42.69  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=21.0

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|++|+|||+.++.+.+.+-
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999998764

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PLN02165 adenylate isopentenyltransferase

Probab=95.22  E-value=0.016  Score=50.12  Aligned_cols=32  Identities=19%  Similarity=0.454  Sum_probs=26.8

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |........|+|.|.+|||||+.+..+.+.+-
T Consensus        37 ~~~~~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         37 MEQNCKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             cccCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            55666777899999999999999999888754

>PRK14531 adenylate kinase; Provisional

Probab=95.21  E-value=0.019  Score=44.87  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.|++.|.+|||||+.++.+.+.+-
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~g   27 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAHG   27 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=95.21  E-value=0.013  Score=46.69  Aligned_cols=28  Identities=21%  Similarity=0.338  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4778999999999999999999998765

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=95.20  E-value=0.018  Score=45.06  Aligned_cols=28  Identities=14%  Similarity=0.294  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   43 (190)
T TIGR01166        16 ERGEVLALLGANGAGKSTLLLHLNGLLR   43 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999888654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=95.20  E-value=0.013  Score=46.78  Aligned_cols=28  Identities=18%  Similarity=0.417  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (216)
T TIGR00960        27 TKGEMVFLVGHSGAGKSTFLKLILGIEK   54 (216)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=95.20  E-value=0.013  Score=50.23  Aligned_cols=28  Identities=29%  Similarity=0.490  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.||||||||+.++.|+..+.
T Consensus        31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         31 KQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4778999999999999999999999764

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=95.19  E-value=0.053  Score=47.16  Aligned_cols=54  Identities=24%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             HHHHhcCCCCCCC--chHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         65 ARAYRTRGPFQLP--PHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        65 ~~~y~~~~~~~~~--PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+.....++-  +|+-    +.+.+++.. +-+++++|+|+.|+|||+.++.+.+.+.
T Consensus         7 ~~kyrP~~~~~iiGq~~~~----~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961          7 ARKWRPQYFRDIIGQKHIV----TAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             HHHhCCCchhhccChHHHH----HHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            4566655544443  3433    234454444 5678899999999999999999999885

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=95.19  E-value=0.019  Score=42.54  Aligned_cols=23  Identities=48%  Similarity=0.572  Sum_probs=21.4

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +++.|++|+|||+.++.++..+.
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999887

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK03839 putative kinase; Provisional

Probab=95.18  E-value=0.018  Score=44.70  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|.+|||||+.++.+.+.+-
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988754

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=95.18  E-value=0.017  Score=48.37  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.|+++|.+|||||+.++.+.+.+
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHC
Confidence            3679999999999999999999876

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=95.15  E-value=0.016  Score=53.11  Aligned_cols=32  Identities=28%  Similarity=0.527  Sum_probs=27.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.|.+.|.|+||||||+..+.++..+. ..+|
T Consensus       367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~-p~~G  398 (582)
T PRK11176        367 PAGKTVALVGRSGSGKSTIANLLTRFYD-IDEG  398 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC-CCCc
Confidence            5789999999999999999999999876 4443

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=95.15  E-value=0.023  Score=49.58  Aligned_cols=27  Identities=22%  Similarity=0.530  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|++|||||++.+.+++++.
T Consensus       133 ~~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999999986

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=95.13  E-value=0.018  Score=46.85  Aligned_cols=24  Identities=38%  Similarity=0.433  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.+.|-||||||+.++.+.+.|-
T Consensus        10 iIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572          10 IIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            466799999999999999999887

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.11  E-value=0.019  Score=48.74  Aligned_cols=26  Identities=42%  Similarity=0.543  Sum_probs=23.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+++|.+|||||+..+.+++++.
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~  157 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIA  157 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            45799999999999999999999886

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=95.10  E-value=0.015  Score=47.13  Aligned_cols=28  Identities=18%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLVE   53 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            5788999999999999999999988665

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.09  E-value=0.019  Score=45.17  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.|||||||.++.+.+.+-
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~   25 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLG   25 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999754

>PRK06893 DNA replication initiation factor; Validated

Probab=95.07  E-value=0.05  Score=44.17  Aligned_cols=30  Identities=17%  Similarity=0.141  Sum_probs=25.3

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+.++++.|.+|+|||+.+..+.+.+.
T Consensus        35 ~~~~~~~l~l~G~~G~GKThL~~ai~~~~~   64 (229)
T PRK06893         35 IDLQQPFFYIWGGKSSGKSHLLKAVSNHYL   64 (229)
T ss_pred             hccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            345566789999999999999999998765

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=95.04  E-value=0.017  Score=48.70  Aligned_cols=21  Identities=33%  Similarity=0.589  Sum_probs=18.0

Q ss_pred             eEEEecCCCCCchhHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il  118 (186)
                      +.||++|.||||||+..+.+-
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lE   22 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALE   22 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHH
Confidence            568999999999999987654

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=95.03  E-value=0.02  Score=44.32  Aligned_cols=23  Identities=30%  Similarity=0.455  Sum_probs=20.7

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|.+|||||+.++.+.+.+-
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            78999999999999999988655

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=95.03  E-value=0.016  Score=46.34  Aligned_cols=28  Identities=21%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (222)
T cd03224          24 PEGEIVALLGRNGAGKTTLLKTIMGLLP   51 (222)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999998887654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK12377 putative replication protein; Provisional

Probab=95.01  E-value=0.055  Score=44.86  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +++..+..-..... . ..+.++|+|.+|+|||+.+..|.+.+.
T Consensus        85 ~a~~~a~~~a~~~~-~-~~~~l~l~G~~GtGKThLa~AIa~~l~  126 (248)
T PRK12377         85 YALSQAKSIADELM-T-GCTNFVFSGKPGTGKNHLAAAIGNRLL  126 (248)
T ss_pred             HHHHHHHHHHHHHH-h-cCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34544443333332 2 347899999999999999999999988

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.01  E-value=0.02  Score=46.89  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=21.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+++|-+|||||+.++.+.+++.
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~   24 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLS   24 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            89999999999999999999885

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=95.01  E-value=0.021  Score=46.64  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .+.+.++|.|.||||||+..|.+-.
T Consensus        26 ~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          26 EKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHC
Confidence            3667899999999999998775544

>PRK07667 uridine kinase; Provisional

Probab=95.01  E-value=0.034  Score=43.92  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|+|.+|||||+.++.+.+.|.
T Consensus        19 iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         19 ILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            678899999999999999999886

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=95.01  E-value=0.017  Score=46.77  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (241)
T cd03256          25 NPGEFVALIGPSGAGKSTLLRCLNGLVE   52 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4778999999999999999999998765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=95.01  E-value=0.015  Score=47.02  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFLR   51 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778999999999999999999988655

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=95.01  E-value=0.016  Score=45.70  Aligned_cols=28  Identities=25%  Similarity=0.407  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678899999999999999999998665

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=94.99  E-value=0.015  Score=54.91  Aligned_cols=32  Identities=22%  Similarity=0.421  Sum_probs=27.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|.|.|+|||||||.+|.+..++. ...|
T Consensus       497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~-p~~G  528 (709)
T COG2274         497 PPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQG  528 (709)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            4778999999999999999999999877 5444

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=94.97  E-value=0.018  Score=45.72  Aligned_cols=28  Identities=21%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=94.96  E-value=0.018  Score=44.78  Aligned_cols=28  Identities=21%  Similarity=0.315  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          24 EAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999987655

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=94.95  E-value=0.017  Score=46.50  Aligned_cols=32  Identities=22%  Similarity=0.393  Sum_probs=26.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~G   55 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP-VKSG   55 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence            4778999999999999999999998765 4333

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=94.95  E-value=0.017  Score=46.92  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (239)
T cd03296          26 PSGELVALLGPSGSGKTTLLRLIAGLER   53 (239)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988654

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=94.94  E-value=0.018  Score=45.69  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999988665

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=94.94  E-value=0.016  Score=46.13  Aligned_cols=28  Identities=14%  Similarity=0.394  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   50 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLLK   50 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778999999999999999999888654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=94.92  E-value=0.017  Score=52.77  Aligned_cols=28  Identities=29%  Similarity=0.432  Sum_probs=26.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+-|.||||||||++++.++.++.
T Consensus        33 ~~GE~lgIvGESGsGKSt~a~~i~gll~   60 (539)
T COG1123          33 EPGEILGIVGESGSGKSTLALALMGLLP   60 (539)
T ss_pred             cCCcEEEEEcCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999999988

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=94.90  E-value=0.052  Score=45.70  Aligned_cols=28  Identities=29%  Similarity=0.288  Sum_probs=26.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+|.+.|+.|||||+..+.+.+.|-
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~   45 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFLNMLKEELK   45 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5788999999999999999999999988

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=94.89  E-value=0.018  Score=46.07  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.|...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   51 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLLK   51 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778899999999999999999988654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=94.89  E-value=0.022  Score=49.93  Aligned_cols=26  Identities=27%  Similarity=0.399  Sum_probs=23.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .--|+++|.+|||||++.+.+++++.
T Consensus       149 ~GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       149 AGLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            44689999999999999999999987

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=94.89  E-value=0.018  Score=46.59  Aligned_cols=28  Identities=21%  Similarity=0.390  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999999988765

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=94.89  E-value=0.019  Score=46.29  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   51 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLVK   51 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988665

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=94.88  E-value=0.019  Score=45.73  Aligned_cols=28  Identities=21%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4778999999999999999999988654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=94.87  E-value=0.021  Score=44.00  Aligned_cols=28  Identities=18%  Similarity=0.364  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          25 KPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988765

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=94.87  E-value=0.018  Score=45.53  Aligned_cols=28  Identities=29%  Similarity=0.493  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   51 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLIK   51 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988655

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=94.86  E-value=0.051  Score=45.52  Aligned_cols=36  Identities=19%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..........++|.|+.|+|||+.++.+.+.+.
T Consensus        28 ~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~   63 (319)
T PRK00440         28 RLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY   63 (319)
T ss_pred             HHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            344444444445689999999999999999998765

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=94.86  E-value=0.018  Score=46.63  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (236)
T TIGR03864        25 RPGEFVALLGPNGAGKSTLFSLLTRLYV   52 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4778999999999999999999987654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=94.86  E-value=0.028  Score=42.44  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=22.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.++|.+|||||+.++.++++|.
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~   25 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELK   25 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999998

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=94.86  E-value=0.045  Score=42.59  Aligned_cols=28  Identities=29%  Similarity=0.353  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-.|+++|.+|||||+.++.+.+.+.
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4566899999999999999999999875

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=94.85  E-value=0.027  Score=43.95  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-|||+|.||+||++.++.+++.+.
T Consensus         3 r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    3 RPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcc
Confidence            5699999999999999999998654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.83  E-value=0.025  Score=45.79  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=20.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      ...+++.+.|+||||||+.++.++
T Consensus        19 ~~Ge~~~l~G~sGsGKSTL~~~~i   42 (226)
T cd03270          19 PRNKLVVITGVSGSGKSSLAFDTI   42 (226)
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHH
Confidence            578899999999999999964333

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=94.82  E-value=0.027  Score=44.74  Aligned_cols=28  Identities=25%  Similarity=0.405  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          24 EKGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678899999999999999999998654

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.78  E-value=0.043  Score=47.68  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=27.2

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......++.++++|.+|+|||..++.+++.+.
T Consensus        49 ~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~   80 (394)
T PRK00411         49 ALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE   80 (394)
T ss_pred             HhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34456678899999999999999999999875

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=94.77  E-value=0.026  Score=44.07  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.++|.+|||||+.++.+-+++.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            388999999999999999999877

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=94.76  E-value=0.034  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=19.9

Q ss_pred             CCCeEEEecCCCCCchhHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAAS  115 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k  115 (186)
                      .+.+.|.|+|+||||||+..+
T Consensus        30 ~~GEiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        30 PSSSLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             cCCCEEEEECCCCCCHHHHHh
Confidence            688999999999999999998

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.76  E-value=0.02  Score=48.00  Aligned_cols=28  Identities=25%  Similarity=0.400  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=94.76  E-value=0.019  Score=46.37  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (235)
T cd03261          24 RRGEILAIIGPSGSGKSTLLRLIVGLLR   51 (235)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999998765

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.74  E-value=0.022  Score=45.33  Aligned_cols=28  Identities=21%  Similarity=0.539  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         26 AAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999998654

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=94.73  E-value=0.023  Score=45.76  Aligned_cols=28  Identities=29%  Similarity=0.375  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..|.+...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            5789999999999999999999988654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=94.73  E-value=0.02  Score=49.70  Aligned_cols=27  Identities=26%  Similarity=0.465  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|.+|||||+..+.+++++.
T Consensus       161 ~~~nilI~G~tGSGKTTll~aLl~~i~  187 (344)
T PRK13851        161 GRLTMLLCGPTGSGKTTMSKTLISAIP  187 (344)
T ss_pred             cCCeEEEECCCCccHHHHHHHHHcccC
Confidence            445699999999999999999998765

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=94.73  E-value=0.021  Score=45.56  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+ +.+.|.|++|||||+..+.+...+.
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~   48 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLEK   48 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence            46 8999999999999999999988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=94.72  E-value=0.022  Score=45.77  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   61 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLDD   61 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4778999999999999999999998765

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=94.72  E-value=0.021  Score=46.40  Aligned_cols=28  Identities=18%  Similarity=0.402  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLEM   53 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988654

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=94.72  E-value=0.021  Score=45.33  Aligned_cols=28  Identities=25%  Similarity=0.477  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03301          24 ADGEFVVLLGPSGCGKTTTLRMIAGLEE   51 (213)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999998765

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=94.72  E-value=0.022  Score=44.70  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...+.+.|++|||||+..+.+...+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQLI   50 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            4678899999999999999999988765

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=94.71  E-value=0.021  Score=44.11  Aligned_cols=28  Identities=18%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999998877654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00698 tmk thymidylate kinase; Validated

Probab=94.71  E-value=0.036  Score=43.44  Aligned_cols=26  Identities=19%  Similarity=0.419  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-.|+|.|..|||||+.++.+.+.|.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~   28 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLE   28 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999874

>PRK10908 cell division protein FtsE; Provisional

Probab=94.71  E-value=0.02  Score=45.84  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         26 RPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988655

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=94.70  E-value=0.022  Score=45.47  Aligned_cols=28  Identities=21%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999988655

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=94.70  E-value=0.022  Score=46.94  Aligned_cols=28  Identities=29%  Similarity=0.549  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         25 ESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999998664

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=94.69  E-value=0.031  Score=43.88  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=21.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .+.+.+.+.|++|||||+..+.++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            467789999999999999998774

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=94.69  E-value=0.034  Score=44.37  Aligned_cols=26  Identities=23%  Similarity=0.369  Sum_probs=23.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.|++.|.+|+|||+++-++-.++.
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~   26 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLK   26 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHh
Confidence            46799999999999999888888877

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK08727 hypothetical protein; Validated

Probab=94.68  E-value=0.066  Score=43.62  Aligned_cols=29  Identities=24%  Similarity=0.342  Sum_probs=24.9

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+.|++.|.+|+|||+.+..+...+.
T Consensus        38 ~~~~~~l~l~G~~G~GKThL~~a~~~~~~   66 (233)
T PRK08727         38 GQSSDWLYLSGPAGTGKTHLALALCAAAE   66 (233)
T ss_pred             ccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34557799999999999999999888776

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=94.65  E-value=0.027  Score=51.49  Aligned_cols=33  Identities=21%  Similarity=0.441  Sum_probs=28.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      -++.+.+.+.|+||||||+..|.++..+. ...|
T Consensus       363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~-p~~G  395 (576)
T TIGR02204       363 VRPGETVALVGPSGAGKSTLFQLLLRFYD-PQSG  395 (576)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence            36889999999999999999999999876 4444

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=94.65  E-value=0.029  Score=45.90  Aligned_cols=28  Identities=21%  Similarity=0.330  Sum_probs=22.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...+.|.|+||||||+....+--...
T Consensus        29 ~~Ge~vaI~GpSGSGKSTLLniig~ld~   56 (226)
T COG1136          29 EAGEFVAIVGPSGSGKSTLLNLLGGLDK   56 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3667799999999999999877665544

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=94.62  E-value=0.09  Score=40.30  Aligned_cols=28  Identities=21%  Similarity=0.389  Sum_probs=25.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...-.|+++|+=|||||+.+|-+++.|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~~~Lg   50 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIAKGLG   50 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHHHHcC
Confidence            5667899999999999999999999888

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=94.62  E-value=0.023  Score=45.98  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLDT   60 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999998654

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.61  E-value=0.026  Score=44.45  Aligned_cols=28  Identities=18%  Similarity=0.339  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         24 LPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678999999999999999999988655

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.61  E-value=0.024  Score=44.89  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=26.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|++|||||+..+.+...+. ..+|
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-p~~G   56 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLAR-PDAG   56 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            3677899999999999999999998765 4333

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=94.60  E-value=0.023  Score=46.08  Aligned_cols=28  Identities=21%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (240)
T PRK09493         25 DQGEVVVIIGPSGSGKSTLLRCINKLEE   52 (240)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=94.59  E-value=0.044  Score=35.80  Aligned_cols=24  Identities=21%  Similarity=0.441  Sum_probs=19.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+|++|||||+..-.+.-.|.
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc
Confidence            588999999999999877666555

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=94.59  E-value=0.025  Score=46.57  Aligned_cols=27  Identities=30%  Similarity=0.397  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~   50 (246)
T cd03237          24 ESEVIGILGPNGIGKTTFIKMLAGVLK   50 (246)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            678899999999999999999988765

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=94.58  E-value=0.033  Score=43.02  Aligned_cols=28  Identities=25%  Similarity=0.503  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          26 EPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4678899999999999999999988765

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=94.58  E-value=0.024  Score=47.09  Aligned_cols=28  Identities=29%  Similarity=0.449  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+++.|.|++|||||+..+.+...+.
T Consensus        48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          48 REGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988765

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=94.57  E-value=0.025  Score=45.12  Aligned_cols=28  Identities=21%  Similarity=0.287  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGELR   53 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4677899999999999999999998765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=94.57  E-value=0.026  Score=45.23  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   59 (224)
T TIGR02324        32 NAGECVALSGPSGAGKSTLLKSLYANYL   59 (224)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=94.55  E-value=0.043  Score=49.76  Aligned_cols=25  Identities=32%  Similarity=0.460  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|+++|++|||||++.+.+++++.
T Consensus       243 GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       243 GIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHhccC
Confidence            3688999999999999998888765

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=94.55  E-value=0.033  Score=45.44  Aligned_cols=28  Identities=21%  Similarity=0.284  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (247)
T TIGR00972        25 PKNQVTALIGPSGCGKSTLLRSLNRMND   52 (247)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4788999999999999999999988764

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=94.55  E-value=0.025  Score=44.94  Aligned_cols=28  Identities=25%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          22 AQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999988764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=94.55  E-value=0.024  Score=45.40  Aligned_cols=28  Identities=29%  Similarity=0.475  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=94.54  E-value=0.024  Score=46.40  Aligned_cols=28  Identities=29%  Similarity=0.350  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999988765

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=94.54  E-value=0.024  Score=46.90  Aligned_cols=28  Identities=25%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~   63 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLET   63 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678999999999999999999998765

>PRK14528 adenylate kinase; Provisional

Probab=94.53  E-value=0.036  Score=43.55  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +.|++.|.+|||||+.++.+.+.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998755

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=94.53  E-value=0.03  Score=51.13  Aligned_cols=32  Identities=25%  Similarity=0.512  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      +..+.|.+.|+||||||+..+.++..+. ..+|
T Consensus       356 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-~~~G  387 (571)
T TIGR02203       356 EPGETVALVGRSGSGKSTLVNLIPRFYE-PDSG  387 (571)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence            5789999999999999999999999876 4433

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=94.52  E-value=0.033  Score=45.13  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGHP   50 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999998864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.033  Score=45.55  Aligned_cols=27  Identities=22%  Similarity=0.294  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            477899999999999999999998754

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=94.50  E-value=0.038  Score=43.77  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...++..|++.|.+|||||+.+..++..+
T Consensus        11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   11 PQEKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             --SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             cccCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            34688899999999999999999999876

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.50  E-value=0.034  Score=45.39  Aligned_cols=28  Identities=25%  Similarity=0.391  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLIE   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999988653

>PRK13342 recombination factor protein RarA; Reviewed

Probab=94.50  E-value=0.057  Score=47.71  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=30.5

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.......+++|.|++|+|||+.++.+.+.+.
T Consensus        25 ~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~   61 (413)
T PRK13342         25 KPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD   61 (413)
T ss_pred             hHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4466667777778999999999999999999987654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=94.50  E-value=0.029  Score=44.74  Aligned_cols=28  Identities=18%  Similarity=0.332  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|||||+..+.+...+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4788999999999999999999988654

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=94.50  E-value=0.026  Score=51.95  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|.+.|+||||||+..+.++.++. ...|
T Consensus       365 ~~Ge~iaIvG~SGsGKSTLl~lL~gl~~-p~~G  396 (592)
T PRK10790        365 PSRGFVALVGHTGSGKSTLASLLMGYYP-LTEG  396 (592)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC-CCCc
Confidence            5789999999999999999999999876 4433

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=94.49  E-value=0.026  Score=46.18  Aligned_cols=32  Identities=28%  Similarity=0.444  Sum_probs=26.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.|.|++|||||+..+.+...+. ..+|
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~G   60 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYK-PTGG   60 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcC-CCcc
Confidence            4778999999999999999999998765 4444

>PRK13946 shikimate kinase; Provisional

Probab=94.49  E-value=0.038  Score=43.26  Aligned_cols=27  Identities=15%  Similarity=0.405  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|++.|.+|||||+.++.+-+.|-
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg   35 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLG   35 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999988764

>PF13173 AAA_14: AAA domain

Probab=94.48  E-value=0.045  Score=40.18  Aligned_cols=26  Identities=27%  Similarity=0.370  Sum_probs=23.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+++.|..|+|||+.++.+++.+.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999998765

>PHA00729 NTP-binding motif containing protein

Probab=94.48  E-value=0.075  Score=43.50  Aligned_cols=28  Identities=29%  Similarity=0.247  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-..|+|+|.+|+|||+.+..+.+.+.
T Consensus        15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         15 NGFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999988764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.47  E-value=0.026  Score=44.01  Aligned_cols=28  Identities=18%  Similarity=0.292  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999888765

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=94.47  E-value=0.034  Score=44.90  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+++.|.|.+|||||+..+.+...+.
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=94.46  E-value=0.03  Score=45.00  Aligned_cols=28  Identities=21%  Similarity=0.503  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|.+.+.|++|||||+..+.+...+.
T Consensus        27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          27 KPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            5778999999999999999999988765

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=94.43  E-value=0.039  Score=42.26  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|+++|.+|||||+.++.+-+.+.
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg   27 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALG   27 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5699999999999999999998764

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=94.42  E-value=0.026  Score=52.83  Aligned_cols=32  Identities=25%  Similarity=0.474  Sum_probs=27.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.+.+.|+||||||+..|.++.++. ..+|
T Consensus       477 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G  508 (686)
T TIGR03797       477 EPGEFVAIVGPSGSGKSTLLRLLLGFET-PESG  508 (686)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence            5789999999999999999999999877 4444

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.41  E-value=0.028  Score=47.16  Aligned_cols=32  Identities=22%  Similarity=0.440  Sum_probs=27.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~-p~~G   62 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALLK-PTTG   62 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            4789999999999999999999998765 4443

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=94.41  E-value=0.028  Score=44.83  Aligned_cols=28  Identities=25%  Similarity=0.564  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        22 ADGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999998765

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK14530 adenylate kinase; Provisional

Probab=94.41  E-value=0.036  Score=44.41  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         5 ~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          5 RILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999988665

>PRK13947 shikimate kinase; Provisional

Probab=94.41  E-value=0.037  Score=42.30  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|.+|||||+.++.+-+-|-
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            499999999999999999988654

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=94.40  E-value=0.033  Score=43.19  Aligned_cols=32  Identities=25%  Similarity=0.376  Sum_probs=26.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G   57 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLK-PQQG   57 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCC
Confidence            4778999999999999999999988655 4343

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=94.40  E-value=0.035  Score=43.99  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|+|||+..+.+...+.
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4788999999999999999999988765

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>PLN02348 phosphoribulokinase

Probab=94.40  E-value=0.063  Score=47.38  Aligned_cols=28  Identities=18%  Similarity=0.247  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.-.|-|.|.||||||+.++.|.+.|-
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg   74 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG   74 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3444677899999999999999999885

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=94.39  E-value=0.032  Score=45.14  Aligned_cols=28  Identities=25%  Similarity=0.476  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFYV   53 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4788999999999999999999998765

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.38  E-value=0.029  Score=45.72  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (241)
T PRK14250         27 EGGAIYTIVGPSGAGKSTLIKLINRLID   54 (241)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999999988654

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=94.38  E-value=0.04  Score=43.42  Aligned_cols=32  Identities=28%  Similarity=0.336  Sum_probs=25.9

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+.....+.+++.|..|+|||...+.+++.+
T Consensus        13 ~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~   44 (234)
T PF01637_consen   13 ELLESGPSQHILLYGPRGSGKTSLLKEFINEL   44 (234)
T ss_dssp             HCHHH--SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred             HHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence            34455568999999999999999999999876

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=94.38  E-value=0.028  Score=51.65  Aligned_cols=32  Identities=19%  Similarity=0.430  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.|.+.|+||||||+..+.++.++. ...|
T Consensus       359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~-p~~G  390 (588)
T PRK13657        359 KPGQTVAIVGPTGAGKSTLINLLQRVFD-PQSG  390 (588)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCcC-CCCC
Confidence            5788999999999999999999999877 4443

>KOG0924|consensus

Probab=94.37  E-value=0.032  Score=52.30  Aligned_cols=37  Identities=32%  Similarity=0.573  Sum_probs=27.7

Q ss_pred             HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ||++.++-   |..-++||.||+.||+|||||+-   +-|||.
T Consensus       357 vf~~R~~l---l~~ir~n~vvvivgETGSGKTTQ---l~QyL~  393 (1042)
T KOG0924|consen  357 VFACRDQL---LSVIRENQVVVIVGETGSGKTTQ---LAQYLY  393 (1042)
T ss_pred             hHHHHHHH---HHHHhhCcEEEEEecCCCCchhh---hHHHHH
Confidence            56655543   33447999999999999999984   566666

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=94.36  E-value=0.074  Score=48.14  Aligned_cols=36  Identities=22%  Similarity=0.306  Sum_probs=28.8

Q ss_pred             HHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         88 YRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        88 ~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ++++... +-.++++|+|+.|.|||+.++.+.+.+.+
T Consensus        30 L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc   66 (484)
T PRK14956         30 LQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC   66 (484)
T ss_pred             HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            4444444 44678999999999999999999998873

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=94.36  E-value=0.03  Score=52.70  Aligned_cols=32  Identities=34%  Similarity=0.499  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|.+.|+||||||+..|.++..+. ...|
T Consensus       498 ~~G~~vaIvG~SGsGKSTLlklL~gl~~-p~~G  529 (708)
T TIGR01193       498 KMNSKTTIVGMSGSGKSTLAKLLVGFFQ-ARSG  529 (708)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC-CCCc
Confidence            5789999999999999999999999776 4443

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=94.35  E-value=0.032  Score=43.40  Aligned_cols=28  Identities=14%  Similarity=0.310  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|.+|||||+..+.+...+.
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~   50 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLLK   50 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988655

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=94.35  E-value=0.039  Score=42.64  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|+|.|..|||||+.++.+.++|.
T Consensus         2 ~I~ieG~~GsGKtT~~~~L~~~l~   25 (200)
T cd01672           2 FIVFEGIDGAGKTTLIELLAERLE   25 (200)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            388999999999999999999985

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=94.35  E-value=0.029  Score=46.56  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   63 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLES   63 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999888654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.33  E-value=0.041  Score=43.46  Aligned_cols=28  Identities=18%  Similarity=0.387  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         25 PAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988654

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=94.33  E-value=0.03  Score=45.63  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLEQ   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778899999999999999999988654

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=94.32  E-value=0.033  Score=44.00  Aligned_cols=28  Identities=21%  Similarity=0.350  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          29 PKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            5788999999999999999999988655

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=94.31  E-value=0.032  Score=45.36  Aligned_cols=28  Identities=32%  Similarity=0.572  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          25 AKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778899999999999999999988655

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.30  E-value=0.032  Score=46.34  Aligned_cols=28  Identities=21%  Similarity=0.503  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         33 NEGEYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999988765

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=94.30  E-value=0.039  Score=45.82  Aligned_cols=27  Identities=22%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|.+|||||+..+.|...+
T Consensus        48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         48 HENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            577899999999999999999999875

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=94.30  E-value=0.032  Score=46.19  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=27.9

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      -.+.+.+.+.|++|||||+..+.+...+. ..+|
T Consensus        23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~-p~~G   55 (255)
T cd03236          23 PREGQVLGLVGPNGIGKSTALKILAGKLK-PNLG   55 (255)
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCcC-CCCc
Confidence            35788999999999999999999999876 4443

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=94.29  E-value=0.035  Score=44.38  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEMQ   52 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            5788999999999999999999888664

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=94.29  E-value=0.075  Score=48.48  Aligned_cols=32  Identities=22%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ...+-+++++|+|+.|.|||++++.+.+.+-|
T Consensus        38 ~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc   69 (507)
T PRK06645         38 LNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC   69 (507)
T ss_pred             HcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34466799999999999999999999998863

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=94.29  E-value=0.051  Score=45.68  Aligned_cols=43  Identities=16%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             HHHhHHHHHHHHHhh--------CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         80 IFAIAGSAYRWLRDR--------SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        80 i~~~a~~a~~~~~~~--------~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++....+++..++..        .+...|+|.|.+|+|||+++..+..++.
T Consensus       169 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~  219 (282)
T TIGR03499       169 AWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFV  219 (282)
T ss_pred             HHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444455555555431        2456899999999999999999999887

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=94.28  E-value=0.031  Score=44.26  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (201)
T cd03231          24 AAGEALQVTGPNGSGKTTLLRILAGLSP   51 (201)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.28  E-value=0.04  Score=45.55  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            478899999999999999999998854

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=94.27  E-value=0.049  Score=41.85  Aligned_cols=24  Identities=29%  Similarity=0.578  Sum_probs=21.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|+.|+|||+.+..+...+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~   25 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998887

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=94.27  E-value=0.032  Score=45.29  Aligned_cols=28  Identities=21%  Similarity=0.331  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        24 PTGSLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999998765

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=94.27  E-value=0.034  Score=44.97  Aligned_cols=32  Identities=28%  Similarity=0.524  Sum_probs=27.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.|.|++|||||+..+.|...+. ..+|
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G   58 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD-PTSG   58 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC-CCCC
Confidence            4778999999999999999999998765 4444

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.26  E-value=0.044  Score=45.06  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.+.+.|.|++|||||+..+.+...+
T Consensus        36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         36 PENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            477899999999999999999998865

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=94.26  E-value=0.028  Score=51.60  Aligned_cols=28  Identities=32%  Similarity=0.489  Sum_probs=25.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+++++.
T Consensus       374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~p  401 (588)
T PRK11174        374 PAGQRIALVGPSGAGKTSLLNALLGFLP  401 (588)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788999999999999999999999874

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.25  E-value=0.041  Score=46.30  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=21.2

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.++|-||||||+.++.+.+.|.
T Consensus         2 IgItG~SGSGKTTv~~~l~~~l~   24 (277)
T cd02029           2 IAVTGSSGAGTTTVKRAFEHIFA   24 (277)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            77899999999999999998876

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=94.25  E-value=0.032  Score=43.96  Aligned_cols=28  Identities=21%  Similarity=0.419  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678899999999999999999888654

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.25  E-value=0.037  Score=45.17  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            477899999999999999999999865

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=94.25  E-value=0.041  Score=50.83  Aligned_cols=28  Identities=21%  Similarity=0.378  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++...|+++|.+|||||+.++.+.+.|.
T Consensus       390 ~~g~~Ivl~Gl~GSGKSTia~~La~~L~  417 (568)
T PRK05537        390 KQGFTVFFTGLSGAGKSTIAKALMVKLM  417 (568)
T ss_pred             CCCeEEEEECCCCChHHHHHHHHHHHhh
Confidence            4555899999999999999999999877

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=94.24  E-value=0.032  Score=47.46  Aligned_cols=27  Identities=41%  Similarity=0.486  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|.+|||||+..+.++.++.
T Consensus       143 ~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       143 SRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            456899999999999999999998765

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=94.24  E-value=0.036  Score=45.65  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998865

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.24  E-value=0.028  Score=46.59  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLLR   52 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678999999999999999999888665

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=94.24  E-value=0.031  Score=45.76  Aligned_cols=28  Identities=21%  Similarity=0.385  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (252)
T TIGR03005        24 AAGEKVALIGPSGSGKSTILRILMTLEP   51 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3778899999999999999999988665

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=94.24  E-value=0.038  Score=42.58  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          26 KPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4788999999999999999999988765

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=94.24  E-value=0.042  Score=47.18  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+++|.+|||||+..+.++.++.
T Consensus       147 ~~~~ilI~G~tGSGKTTll~aL~~~~~  173 (319)
T PRK13894        147 AHRNILVIGGTGSGKTTLVNAIINEMV  173 (319)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            456799999999999999999998764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=94.22  E-value=0.032  Score=45.04  Aligned_cols=28  Identities=21%  Similarity=0.497  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         23 ERGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999888655

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=94.22  E-value=0.031  Score=46.02  Aligned_cols=28  Identities=21%  Similarity=0.442  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~   55 (251)
T PRK09544         28 KPGKILTLLGPNGAGKSTLVRVVLGLVA   55 (251)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988665

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.21  E-value=0.032  Score=46.23  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   60 (269)
T PRK13648         33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK   60 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4788999999999999999999988765

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=94.21  E-value=0.042  Score=44.64  Aligned_cols=28  Identities=18%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~   72 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLLQ   72 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4778999999999999999999988654

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK00625 shikimate kinase; Provisional

Probab=94.20  E-value=0.043  Score=42.91  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|++.|..|||||+.++.+-+.+-
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988654

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=94.20  E-value=0.033  Score=46.55  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=17.3

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      -||++|.||||||...+-+-
T Consensus         3 lvIVTGlSGAGKsvAl~~lE   22 (286)
T COG1660           3 LVIVTGLSGAGKSVALRVLE   22 (286)
T ss_pred             EEEEecCCCCcHHHHHHHHH
Confidence            58999999999999987654

>PRK08356 hypothetical protein; Provisional

Probab=94.19  E-value=0.036  Score=43.74  Aligned_cols=23  Identities=26%  Similarity=0.222  Sum_probs=20.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      -.|+++|.+|||||+.++.+.++
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~~   28 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEEK   28 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            46889999999999999999653

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=94.19  E-value=0.043  Score=44.27  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   73 (224)
T cd03220          46 PRGERIGLIGRNGAGKSTLLRLLAGIYP   73 (224)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=94.19  E-value=0.035  Score=44.74  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   31 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLIP   31 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678899999999999999999998665

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=94.18  E-value=0.04  Score=44.40  Aligned_cols=28  Identities=25%  Similarity=0.492  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLIS   58 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4778999999999999999999988654

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=94.17  E-value=0.039  Score=44.05  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|.+|||||+..+.+...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLVE   55 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4778999999999999999999988765

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=94.17  E-value=0.033  Score=45.75  Aligned_cols=28  Identities=25%  Similarity=0.415  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+++.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         29 NAGDVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678899999999999999999998765

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=94.16  E-value=0.041  Score=45.57  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         44 EKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            578999999999999999999998865

>PRK14974 cell division protein FtsY; Provisional

Probab=94.16  E-value=0.11  Score=45.00  Aligned_cols=28  Identities=25%  Similarity=0.576  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++..|++.|..|+|||+++..+..++.
T Consensus       138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~  165 (336)
T PRK14974        138 GKPVVIVFVGVNGTGKTTTIAKLAYYLK  165 (336)
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3468999999999999999999998877

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.16  E-value=0.044  Score=44.78  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   55 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLLE   55 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999988754

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=94.16  E-value=0.04  Score=46.19  Aligned_cols=23  Identities=30%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.+.|.||||||+.++.+.+.+.
T Consensus         2 igI~G~sGsGKSTl~~~L~~ll~   24 (273)
T cd02026           2 IGVAGDSGCGKSTFLRRLTSLFG   24 (273)
T ss_pred             EEEECCCCCCHHHHHHHHHHhhC
Confidence            67899999999999999998764

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.15  E-value=0.044  Score=44.76  Aligned_cols=27  Identities=19%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.|...+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=94.15  E-value=0.043  Score=43.47  Aligned_cols=31  Identities=32%  Similarity=0.579  Sum_probs=25.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ....|.|+|.||+|||+..|.+..... ..+|
T Consensus        28 ~Ge~iaitGPSG~GKStllk~va~Lis-p~~G   58 (223)
T COG4619          28 AGEFIAITGPSGCGKSTLLKIVASLIS-PTSG   58 (223)
T ss_pred             CCceEEEeCCCCccHHHHHHHHHhccC-CCCc
Confidence            566799999999999999999888665 4443

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=94.15  E-value=0.031  Score=46.22  Aligned_cols=28  Identities=21%  Similarity=0.262  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778999999999999999999988654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.14  E-value=0.044  Score=43.09  Aligned_cols=26  Identities=27%  Similarity=0.309  Sum_probs=22.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+.|.|++|||||+..+.+...
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            47789999999999999999988864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=94.13  E-value=0.044  Score=43.48  Aligned_cols=28  Identities=18%  Similarity=0.274  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4778999999999999999998888654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=94.13  E-value=0.039  Score=45.18  Aligned_cols=28  Identities=18%  Similarity=0.208  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         31 LKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4778999999999999999999988765

>PRK15453 phosphoribulokinase; Provisional

Probab=94.12  E-value=0.055  Score=45.81  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-.|.++|-||||||+.++.+.+-|.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~   30 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFR   30 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            445789999999999999998887665

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=94.12  E-value=0.039  Score=46.74  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .+.|+++|.||||||+.++.+-
T Consensus         6 ~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          6 MRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             ceEEEEECCCCCcHHHHHHHHH
Confidence            4679999999999999999874

>PRK13764 ATPase; Provisional

Probab=94.12  E-value=0.055  Score=50.29  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=23.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+++|.+|||||+.++.+++++.
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~  282 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYA  282 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45599999999999999999999987

>PRK06761 hypothetical protein; Provisional

Probab=94.12  E-value=0.039  Score=46.63  Aligned_cols=25  Identities=32%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|+++|.+|||||+.++.+.+.+.
T Consensus         4 ~lIvI~G~~GsGKTTla~~L~~~L~   28 (282)
T PRK06761          4 KLIIIEGLPGFGKSTTAKMLNDILS   28 (282)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4699999999999999999999886

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=94.11  E-value=0.033  Score=47.10  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   44 (302)
T TIGR01188        17 REGEVFGFLGPNGAGKTTTIRMLTTLLR   44 (302)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=94.11  E-value=0.037  Score=49.21  Aligned_cols=28  Identities=29%  Similarity=0.485  Sum_probs=25.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ....+-+.||||||||.++..+++.|.+
T Consensus        35 ~GEtlAlVGESGSGKSvTa~sim~LLp~   62 (534)
T COG4172          35 AGETLALVGESGSGKSVTALSILGLLPS   62 (534)
T ss_pred             CCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence            6678999999999999999999999983

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=94.10  E-value=0.035  Score=44.40  Aligned_cols=28  Identities=21%  Similarity=0.514  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988655

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=94.10  E-value=0.097  Score=44.41  Aligned_cols=35  Identities=17%  Similarity=0.140  Sum_probs=30.4

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|..+..+.-.+|-|+|.+|||||+..+.+++.|.
T Consensus        95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~  129 (290)
T PRK10463         95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK  129 (290)
T ss_pred             HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34566778889999999999999999999999876

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=94.10  E-value=0.035  Score=45.59  Aligned_cols=28  Identities=32%  Similarity=0.379  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARLA   57 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=94.10  E-value=0.048  Score=41.82  Aligned_cols=28  Identities=18%  Similarity=0.325  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|.+|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          24 RRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988655

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=94.09  E-value=0.042  Score=44.07  Aligned_cols=28  Identities=25%  Similarity=0.449  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            5788999999999999999999998765

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13949 shikimate kinase; Provisional

Probab=94.09  E-value=0.048  Score=42.32  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|..|||||+.++.+-+.+-
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            599999999999999999888654

>cd04155 Arl3 Arl3 subfamily

Probab=94.08  E-value=0.062  Score=40.67  Aligned_cols=30  Identities=30%  Similarity=0.381  Sum_probs=23.6

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +....+.-.|++.|.+|+|||+..+.+...
T Consensus         8 ~~~~~~~~~v~i~G~~g~GKStLl~~l~~~   37 (173)
T cd04155           8 LRKSSEEPRILILGLDNAGKTTILKQLASE   37 (173)
T ss_pred             hhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence            333345567999999999999999988774

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=94.08  E-value=0.034  Score=50.39  Aligned_cols=32  Identities=25%  Similarity=0.516  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.+.|+||||||+..+.+..++. ...|
T Consensus       346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G  377 (529)
T TIGR02857       346 PPGERVALVGPSGAGKSTLLNLLLGFVD-PTEG  377 (529)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            5888999999999999999999999776 4433

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=94.07  E-value=0.061  Score=46.15  Aligned_cols=28  Identities=25%  Similarity=0.297  Sum_probs=25.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|.+.|.+|+|||+++..+..++.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3578999999999999999999999887

>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []

Probab=94.06  E-value=0.049  Score=42.68  Aligned_cols=24  Identities=25%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ....|+|.|+||+|||+++-.+++
T Consensus        17 ~G~GVLi~G~SG~GKS~lAl~Li~   40 (171)
T PF07475_consen   17 GGVGVLITGPSGIGKSELALELIK   40 (171)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356799999999999999888777

Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=94.06  E-value=0.076  Score=45.28  Aligned_cols=30  Identities=23%  Similarity=0.336  Sum_probs=26.0

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+=.|+++|.||+|||+.++.+.+.|.
T Consensus        88 ~~~~p~iIlI~G~sgsGKStlA~~La~~l~  117 (301)
T PRK04220         88 KSKEPIIILIGGASGVGTSTIAFELASRLG  117 (301)
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            335667899999999999999999999875

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=94.06  E-value=0.034  Score=46.99  Aligned_cols=28  Identities=29%  Similarity=0.584  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~   55 (303)
T TIGR01288        28 ARGECFGLLGPNGAGKSTIARMLLGMIS   55 (303)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=94.04  E-value=0.05  Score=43.62  Aligned_cols=28  Identities=18%  Similarity=0.344  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        24 PKNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999888654

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=94.04  E-value=0.048  Score=44.48  Aligned_cols=27  Identities=26%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.|...+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998753

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=94.03  E-value=0.035  Score=52.05  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|.+.|+||||||+..|.+..++. ...|
T Consensus       489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~-p~~G  520 (694)
T TIGR03375       489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQ-PTEG  520 (694)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            5788999999999999999999999876 4444

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=94.03  E-value=0.036  Score=45.85  Aligned_cols=32  Identities=25%  Similarity=0.420  Sum_probs=26.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.|.|++|||||+..+.|...+. ..+|
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G   66 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLEK-PAQG   66 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            4778899999999999999999988765 4333

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=94.03  E-value=0.052  Score=41.65  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.+.|.+|||||+.+..+++.|.
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999887

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=94.01  E-value=0.038  Score=47.30  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=27.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|++|||||+..+.+...+. ..+|
T Consensus        50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~-p~~G   81 (320)
T PRK13631         50 EKNKIYFIIGNSGSGKSTLVTHFNGLIK-SKYG   81 (320)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence            5889999999999999999999998766 4444

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=94.00  E-value=0.037  Score=45.64  Aligned_cols=28  Identities=14%  Similarity=0.286  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.|...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999988765

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=94.00  E-value=0.038  Score=44.81  Aligned_cols=28  Identities=29%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999998765

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=94.00  E-value=0.098  Score=43.38  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=29.8

Q ss_pred             chHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         78 PHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        78 PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |.+=.+.+++.+.+.   .++.|++.|++|+|||+.++.+-+.+
T Consensus         5 ~~~~~l~~~~l~~l~---~g~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640         5 DAVKRVTSRALRYLK---SGYPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             HHHHHHHHHHHHHHh---cCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            444555555554443   35679999999999999999988744

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>PRK08116 hypothetical protein; Validated

Probab=93.99  E-value=0.14  Score=42.78  Aligned_cols=27  Identities=26%  Similarity=0.399  Sum_probs=24.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..++|.|.+|+|||+.+..+.+.+.
T Consensus       113 ~~~gl~l~G~~GtGKThLa~aia~~l~  139 (268)
T PRK08116        113 ENVGLLLWGSVGTGKTYLAACIANELI  139 (268)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            455799999999999999999999987

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=93.98  E-value=0.061  Score=41.53  Aligned_cols=25  Identities=32%  Similarity=0.363  Sum_probs=22.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|.++|.+|||||+.++.+++.|.
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~   26 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALS   26 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999887

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK06620 hypothetical protein; Validated

Probab=93.98  E-value=0.11  Score=41.95  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=19.8

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..++|.|++|+|||+.++.+.+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            67999999999999999875553

>PRK09087 hypothetical protein; Validated

Probab=93.98  E-value=0.098  Score=42.57  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .+..++|.|++|+|||+.++.+.+
T Consensus        43 ~~~~l~l~G~~GsGKThLl~~~~~   66 (226)
T PRK09087         43 PSPVVVLAGPVGSGKTHLASIWRE   66 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            356699999999999999997764

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.97  E-value=0.081  Score=48.05  Aligned_cols=36  Identities=28%  Similarity=0.326  Sum_probs=28.9

Q ss_pred             HHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         87 AYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        87 a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++++ ..+-+|+++|+|..|.|||++++.+-+.|-
T Consensus        24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         24 ILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLN   60 (491)
T ss_pred             HHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHc
Confidence            344443 346678999999999999999999999775

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=93.97  E-value=0.045  Score=44.08  Aligned_cols=28  Identities=25%  Similarity=0.493  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4788999999999999999999888765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10646 ADP-binding protein; Provisional

Probab=93.96  E-value=0.15  Score=39.20  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-.|++.|+-|||||+.+|-+++.|.
T Consensus        26 ~~g~vi~L~GdLGaGKTtf~rgl~~~Lg   53 (153)
T PRK10646         26 DGATVIYLYGDLGAGKTTFSRGFLQALG   53 (153)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3445789999999999999999999887

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=93.96  E-value=0.063  Score=42.10  Aligned_cols=28  Identities=25%  Similarity=0.379  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.++|.|.+|.|||..+..+.+.++
T Consensus        45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~   72 (178)
T PF01695_consen   45 ENGENLILYGPPGTGKTHLAVAIANEAI   72 (178)
T ss_dssp             SC--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCeEEEEEhhHhHHHHHHHHHHHHHhc
Confidence            3678899999999999999999999887

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.95  E-value=0.052  Score=44.28  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999998865

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.95  E-value=0.051  Score=44.74  Aligned_cols=28  Identities=18%  Similarity=0.261  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..|.+...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~   58 (259)
T PRK14260         31 YRNKVTAIIGPSGCGKSTFIKTLNRISE   58 (259)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            4678999999999999999999998654

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=93.95  E-value=0.039  Score=45.68  Aligned_cols=28  Identities=39%  Similarity=0.588  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~   64 (267)
T PRK15112         37 REGQTLAIIGENGSGKSTLAKMLAGMIE   64 (267)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

>PRK12608 transcription termination factor Rho; Provisional

Probab=93.95  E-value=0.065  Score=47.08  Aligned_cols=41  Identities=12%  Similarity=0.091  Sum_probs=36.1

Q ss_pred             HhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..++.-.+.--.+.|.++|.|+.|+|||+.++.+.+.+.
T Consensus       118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~  158 (380)
T PRK12608        118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVA  158 (380)
T ss_pred             chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            56677777777778999999999999999999999999776

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.94  E-value=0.038  Score=46.05  Aligned_cols=28  Identities=14%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|.+|||||+..+.|...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   53 (275)
T PRK13639         26 EKGEMVALLGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4788999999999999999999988765

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=93.92  E-value=0.054  Score=44.86  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         43 PEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4678999999999999999999998653

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=93.92  E-value=0.038  Score=45.93  Aligned_cols=28  Identities=21%  Similarity=0.341  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   58 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFVR   58 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678899999999999999999988654

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=93.92  E-value=0.04  Score=50.46  Aligned_cols=32  Identities=25%  Similarity=0.470  Sum_probs=27.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+-+.|+||||||+..+.+++++- ...|
T Consensus       353 ~~Ge~vaiVG~sGsGKSTl~~LL~r~~~-~~~G  384 (567)
T COG1132         353 EPGEKVAIVGPSGSGKSTLIKLLLRLYD-PTSG  384 (567)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC-CCCC
Confidence            5778899999999999999999999987 4343

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=93.92  E-value=0.052  Score=44.29  Aligned_cols=26  Identities=23%  Similarity=0.310  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+.|.|++|||||+..+.+...
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            36789999999999999999999764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=93.92  E-value=0.045  Score=51.64  Aligned_cols=32  Identities=28%  Similarity=0.488  Sum_probs=27.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      +..|.+.+.|+||||||+..+.+.+++. ..+|
T Consensus       505 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~-p~~G  536 (711)
T TIGR00958       505 HPGEVVALVGPSGSGKSTVAALLQNLYQ-PTGG  536 (711)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC-CCCC
Confidence            5889999999999999999999999876 4444

>PRK14532 adenylate kinase; Provisional

Probab=93.92  E-value=0.052  Score=42.29  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=21.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|.+|||||+.++.+.+.+-
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999987654

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.91  E-value=0.12  Score=45.46  Aligned_cols=56  Identities=23%  Similarity=0.269  Sum_probs=37.8

Q ss_pred             HHHhcCCCCCCCchHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        66 ~~y~~~~~~~~~PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      .+|+.....++--|-..  ...+++++.. +-+++++|+|+.|.|||+.++.+.+.+.|
T Consensus         8 ~k~RP~~~~eiiGq~~~--~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955          8 RKYRPKKFADITAQEHI--TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             HhcCCCcHhhccChHHH--HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            34554444443323222  2345666655 56678999999999999999999998874

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.91  E-value=0.036  Score=46.16  Aligned_cols=28  Identities=18%  Similarity=0.302  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   58 (280)
T PRK13649         31 EDGSYTAFIGHTGSGKSTIMQLLNGLHV   58 (280)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999988765

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=93.91  E-value=0.083  Score=48.37  Aligned_cols=33  Identities=30%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .......++.++|.||+|+|||..++.+.++.-
T Consensus        79 ~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~  111 (531)
T TIGR02902        79 AALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK  111 (531)
T ss_pred             HHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence            334556789999999999999999999987643

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=93.91  E-value=0.042  Score=44.58  Aligned_cols=28  Identities=18%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|+|||+..+.+...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   53 (242)
T TIGR03411        26 DPGELRVIIGPNGAGKTTMMDVITGKTR   53 (242)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778899999999999999999998765

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=93.90  E-value=0.13  Score=41.58  Aligned_cols=25  Identities=24%  Similarity=0.289  Sum_probs=22.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|++|+|||+..+.+.+.+.
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~   59 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQ   59 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999988877

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=93.89  E-value=0.1  Score=44.37  Aligned_cols=48  Identities=21%  Similarity=0.250  Sum_probs=32.2

Q ss_pred             CCCchHHHhHHHHHHHHH----hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         75 QLPPHIFAIAGSAYRWLR----DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        75 ~~~PHi~~~a~~a~~~~~----~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++|.--..+......+.    +-.....|+++|.+|||||+.++.+.+.|-
T Consensus       107 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg  158 (309)
T PRK08154        107 QASPAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLG  158 (309)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            344433333433333333    335778999999999999999999877543

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=93.88  E-value=0.053  Score=44.46  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         27 QRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988654

>PRK02496 adk adenylate kinase; Provisional

Probab=93.88  E-value=0.055  Score=42.06  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|++.|.+|||||+.++.+.+.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998765

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.86  E-value=0.055  Score=44.23  Aligned_cols=27  Identities=19%  Similarity=0.177  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.|....
T Consensus        29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         29 YKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            477899999999999999999998764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=93.86  E-value=0.05  Score=47.09  Aligned_cols=27  Identities=22%  Similarity=0.447  Sum_probs=22.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|.|+||||||+..+.|--...
T Consensus        28 ~Gef~vllGPSGcGKSTlLr~IAGLe~   54 (338)
T COG3839          28 DGEFVVLLGPSGCGKSTLLRMIAGLEE   54 (338)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            446799999999999999988877655

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=93.85  E-value=0.04  Score=47.84  Aligned_cols=28  Identities=29%  Similarity=0.376  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.|...+.
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~   53 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLEH   53 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999999998765

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=93.85  E-value=0.056  Score=42.63  Aligned_cols=27  Identities=19%  Similarity=0.219  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            578899999999999999999998876

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.85  E-value=0.061  Score=44.44  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=21.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +.+-|.|.|+||||||+..|.+-.
T Consensus        29 ~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638          29 QGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhc
Confidence            567799999999999999998888

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=93.84  E-value=0.15  Score=42.74  Aligned_cols=42  Identities=21%  Similarity=0.188  Sum_probs=29.2

Q ss_pred             chHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         78 PHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        78 PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      |-+=++....+-.++.. .++-+++.|++|+|||...+..++-
T Consensus        15 pT~dt~r~~~ll~~l~~-~~~pvLl~G~~GtGKT~li~~~l~~   56 (272)
T PF12775_consen   15 PTVDTVRYSYLLDLLLS-NGRPVLLVGPSGTGKTSLIQNFLSS   56 (272)
T ss_dssp             --HHHHHHHHHHHHHHH-CTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHHHH-cCCcEEEECCCCCchhHHHHhhhcc
Confidence            44444554444444444 4788999999999999999888764

>PLN02200 adenylate kinase family protein

Probab=93.84  E-value=0.069  Score=43.74  Aligned_cols=27  Identities=26%  Similarity=0.287  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+-.|++.|.+|||||+.++.+.+.+-
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g   68 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFG   68 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456789999999999999999988654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=93.84  E-value=0.055  Score=44.47  Aligned_cols=28  Identities=18%  Similarity=0.217  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~   55 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE   55 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999998653

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=93.83  E-value=0.052  Score=42.14  Aligned_cols=23  Identities=30%  Similarity=0.400  Sum_probs=20.3

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|.+|||||+.++.+.+.+.
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~   24 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYG   24 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcC
Confidence            89999999999999999887643

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=93.82  E-value=0.055  Score=44.73  Aligned_cols=24  Identities=33%  Similarity=0.711  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|.||||||+..+.++.++.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~   38 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLR   38 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhc
Confidence            589999999999999999999876

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.82  E-value=0.048  Score=45.08  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+++.+.|++|||||+..+.+...+.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (261)
T PRK14263         32 RKNEITGFIGPSGCGKSTVLRSLNRMND   59 (261)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcccc
Confidence            4778999999999999999999987654

>smart00072 GuKc Guanylate kinase homologues

Probab=93.82  E-value=0.05  Score=42.53  Aligned_cols=23  Identities=35%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      -||++|.||+||++.++.+++..
T Consensus         4 ~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        4 PIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            58999999999999999998874

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=93.82  E-value=0.04  Score=41.45  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|++|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          24 NPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678899999999999999999888654

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.80  E-value=0.056  Score=44.09  Aligned_cols=28  Identities=25%  Similarity=0.275  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   54 (250)
T PRK14262         27 FKNQITAIIGPSGCGKTTLLRSINRMND   54 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4778999999999999999999997653

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.80  E-value=0.056  Score=44.42  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~   63 (258)
T PRK14268         36 PKNSVTALIGPSGCGKSTFIRCLNRMND   63 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988653

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=93.80  E-value=0.058  Score=42.68  Aligned_cols=27  Identities=22%  Similarity=0.326  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGHP   50 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            477899999999999999999888763

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=93.80  E-value=0.046  Score=43.94  Aligned_cols=34  Identities=38%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .-++.|.+-+.|+.|||||+.+|++...+. ..+|
T Consensus        35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~-PTsG   68 (267)
T COG4167          35 TLREGQTLAIIGENGSGKSTLAKMLAGMIE-PTSG   68 (267)
T ss_pred             EecCCcEEEEEccCCCcHhHHHHHHhcccC-CCCc
Confidence            345889999999999999999999988766 5544

>TIGR00101 ureG urease accessory protein UreG

Probab=93.79  E-value=0.066  Score=42.72  Aligned_cols=25  Identities=32%  Similarity=0.308  Sum_probs=22.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|.++|..|||||+..+.+++.+.
T Consensus         2 ~~i~i~G~~GsGKTTll~~l~~~l~   26 (199)
T TIGR00101         2 LKIGVAGPVGSGKTALIEALTRALR   26 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhhC
Confidence            3588999999999999999999876

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=93.79  E-value=0.058  Score=44.57  Aligned_cols=27  Identities=26%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~l~   67 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKLFK   67 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHHH
Confidence            345689999999999999999998775

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.78  E-value=0.056  Score=42.93  Aligned_cols=25  Identities=28%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +...|+++.|.||+|||+..|.+--
T Consensus        35 ~aGECvvL~G~SG~GKStllr~LYa   59 (235)
T COG4778          35 NAGECVVLHGPSGSGKSTLLRSLYA   59 (235)
T ss_pred             cCccEEEeeCCCCCcHHHHHHHHHh
Confidence            3678999999999999998877643

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=93.78  E-value=0.042  Score=51.67  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.|.+.|+||||||+..|.++.++. ...|
T Consensus       503 ~~Ge~vaIvG~sGsGKSTLlklL~gl~~-p~~G  534 (710)
T TIGR03796       503 QPGQRVALVGGSGSGKSTIAKLVAGLYQ-PWSG  534 (710)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            5789999999999999999999999876 4444

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=93.78  E-value=0.062  Score=44.43  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         34 PKNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            478899999999999999999999754

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=93.78  E-value=0.097  Score=41.68  Aligned_cols=33  Identities=18%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.....-.|.++|..|||||+..+++++.+.
T Consensus        15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            455566777899999999999999999998765

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=93.78  E-value=0.042  Score=45.55  Aligned_cols=28  Identities=29%  Similarity=0.321  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.|...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         31 PRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999988654

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=93.77  E-value=0.075  Score=41.45  Aligned_cols=26  Identities=27%  Similarity=0.534  Sum_probs=23.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+|.|..|||||+.++.+-+.|.
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999986

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=93.76  E-value=0.04  Score=43.74  Aligned_cols=24  Identities=21%  Similarity=0.317  Sum_probs=21.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|.|++|||||+..+.+...+.
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl~~   50 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATLTP   50 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCCCC
Confidence            789999999999999999988665

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=93.75  E-value=0.052  Score=43.80  Aligned_cols=32  Identities=25%  Similarity=0.494  Sum_probs=26.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|.+|||||+..+.|...+. ...|
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~-~~~G   56 (236)
T cd03253          25 PAGKKVAIVGPSGSGKSTILRLLFRFYD-VSSG   56 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC-CCCC
Confidence            4778999999999999999999998765 4333

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=93.75  E-value=0.058  Score=44.43  Aligned_cols=28  Identities=25%  Similarity=0.370  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.|...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLIT   55 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999988664

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.74  E-value=0.058  Score=44.77  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         37 PRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            478899999999999999999998764

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.74  E-value=0.06  Score=43.99  Aligned_cols=28  Identities=21%  Similarity=0.250  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   55 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4778999999999999999999998653

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.74  E-value=0.059  Score=44.90  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998764

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.73  E-value=0.06  Score=44.03  Aligned_cols=27  Identities=22%  Similarity=0.352  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            478899999999999999999998865

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=93.72  E-value=0.13  Score=40.12  Aligned_cols=34  Identities=15%  Similarity=0.184  Sum_probs=28.3

Q ss_pred             HHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++.. .+-+++++|.|+.|.|||+.++.+.+.+.
T Consensus         5 ~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~   39 (188)
T TIGR00678         5 KRALEKGRLAHAYLFAGPEGVGKELLALALAKALL   39 (188)
T ss_pred             HHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence            34443 45678999999999999999999999887

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=93.72  E-value=0.12  Score=44.86  Aligned_cols=39  Identities=15%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             HHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         85 GSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        85 ~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ...+..++. .+-+++++|+|+.|.|||+.++.+.+++.|
T Consensus        32 ~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         32 EAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             HHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            344555544 455889999999999999999999999884

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=93.70  E-value=0.058  Score=46.73  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.|...+.
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~   49 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLTR   49 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3678999999999999999999988654

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=93.70  E-value=0.064  Score=38.08  Aligned_cols=23  Identities=35%  Similarity=0.309  Sum_probs=19.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|++.|.+|+|||+..+.++.--
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~   23 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGE   23 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEECcCCCCHHHHHHHHhcCC
Confidence            38899999999999988877643

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.70  E-value=0.058  Score=46.14  Aligned_cols=28  Identities=29%  Similarity=0.522  Sum_probs=24.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ..=-|+++|.+|||||++.-.++.|+-.
T Consensus       124 ~~GLILVTGpTGSGKSTTlAamId~iN~  151 (353)
T COG2805         124 PRGLILVTGPTGSGKSTTLAAMIDYINK  151 (353)
T ss_pred             CCceEEEeCCCCCcHHHHHHHHHHHHhc
Confidence            4456889999999999999999999873

>PRK00279 adk adenylate kinase; Reviewed

Probab=93.69  E-value=0.065  Score=42.89  Aligned_cols=24  Identities=25%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|.+|||||+.++.+.+.+-
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999987654

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=93.68  E-value=0.039  Score=45.77  Aligned_cols=32  Identities=16%  Similarity=0.149  Sum_probs=27.6

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |.--.+.|.++|.|++|+|||+.++.+.+.+.
T Consensus        10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128          10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             ecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            44556899999999999999999999998665

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.68  E-value=0.064  Score=43.72  Aligned_cols=28  Identities=21%  Similarity=0.246  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         27 PARQVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4778999999999999999999988654

>KOG0056|consensus

Probab=93.67  E-value=0.075  Score=48.46  Aligned_cols=32  Identities=22%  Similarity=0.498  Sum_probs=28.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|-+.|+||+|||++.+.+++++- ..+|
T Consensus       562 ~pGktvAlVG~SGaGKSTimRlLfRffd-v~sG  593 (790)
T KOG0056|consen  562 QPGKTVALVGPSGAGKSTIMRLLFRFFD-VNSG  593 (790)
T ss_pred             cCCcEEEEECCCCCchhHHHHHHHHHhh-ccCc
Confidence            3678999999999999999999999988 5554

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=93.67  E-value=0.043  Score=47.39  Aligned_cols=28  Identities=21%  Similarity=0.281  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~   56 (343)
T PRK11153         29 PAGEIFGVIGASGAGKSTLIRCINLLER   56 (343)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            4678899999999999999999988765

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.66  E-value=0.14  Score=46.21  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=28.9

Q ss_pred             HHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.+... +-+++++|+|+.|+|||+.++.+.+.+-
T Consensus        24 ~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         24 KLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            344555444 4457799999999999999999998775

>PRK13695 putative NTPase; Provisional

Probab=93.65  E-value=0.066  Score=41.32  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|++|+|||+.++.+.+.+.
T Consensus         2 ~i~ltG~~G~GKTTll~~i~~~l~   25 (174)
T PRK13695          2 KIGITGPPGVGKTTLVLKIAELLK   25 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            378999999999999999888765

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=93.64  E-value=0.06  Score=43.92  Aligned_cols=26  Identities=19%  Similarity=0.377  Sum_probs=23.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+.|.|++|||||+..+.|...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         31 NKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            47789999999999999999998875

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=93.62  E-value=0.058  Score=44.57  Aligned_cols=28  Identities=14%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253         31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778999999999999999998887654

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.62  E-value=0.052  Score=45.41  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.|...+.
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~   58 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLLL   58 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            4778999999999999999999998875

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.62  E-value=0.052  Score=45.22  Aligned_cols=32  Identities=22%  Similarity=0.460  Sum_probs=27.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus        31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~-~~~G   62 (277)
T PRK13642         31 TKGEWVSIIGQNGSGKSTTARLIDGLFE-EFEG   62 (277)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCC
Confidence            4788999999999999999999998776 4444

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.61  E-value=0.048  Score=45.42  Aligned_cols=28  Identities=18%  Similarity=0.177  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (274)
T PRK13647         29 PEGSKTALLGPNGAGKSTLLLHLNGIYL   56 (274)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=93.60  E-value=0.045  Score=48.15  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=26.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|+||||||+..+.+...+. ..+|
T Consensus        48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~-p~~G   79 (382)
T TIGR03415        48 EEGEICVLMGLSGSGKSSLLRAVNGLNP-VSRG   79 (382)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCc
Confidence            3778899999999999999999998766 4444

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=93.60  E-value=0.046  Score=47.45  Aligned_cols=28  Identities=25%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.|.....
T Consensus        30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~   57 (351)
T PRK11432         30 KQGTMVTLLGPSGCGKTTVLRLVAGLEK   57 (351)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence            4678999999999999999999988765

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=93.60  E-value=0.09  Score=44.10  Aligned_cols=41  Identities=12%  Similarity=0.131  Sum_probs=33.3

Q ss_pred             HhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.....+++.+.-+.+++.|.+|+|||+..+.+...+.
T Consensus        96 ~~~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858        96 GAADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             CcHHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            34566666666666568999999999999999999999877

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=93.59  E-value=0.048  Score=43.69  Aligned_cols=28  Identities=29%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~   56 (220)
T TIGR02982        29 NPGEIVILTGPSGSGKTTLLTLIGGLRS   56 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999988765

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.59  E-value=0.15  Score=46.99  Aligned_cols=55  Identities=20%  Similarity=0.402  Sum_probs=37.0

Q ss_pred             HHHHhcCCCCCCC--chHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         65 ARAYRTRGPFQLP--PHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        65 ~~~y~~~~~~~~~--PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      ..+|+-....+.-  +|+..    .+.+++.. +-+.+++|+|+.|+|||+.++.+.+.|.|
T Consensus         7 a~KyRP~~f~diiGq~~~v~----~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957          7 ARKYRPQSFAEVAGQQHALN----SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             HHHHCcCcHHHhcCcHHHHH----HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3455554444433  44442    24444444 55677999999999999999999998873

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=93.58  E-value=0.044  Score=44.36  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (237)
T PRK11614         29 NQGEIVTLIGANGAGKTTLLGTLCGDPR   56 (237)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778899999999999999998887654

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=93.57  E-value=0.063  Score=43.96  Aligned_cols=28  Identities=14%  Similarity=0.331  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~   47 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLLP   47 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4778999999999999999999887653

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=93.57  E-value=0.12  Score=43.33  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+++.|++|+|||+.++.+.+.+.
T Consensus        28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        28 EALDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999988764

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=93.57  E-value=0.06  Score=44.28  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~~G   76 (257)
T cd03288          45 KPGQKVGICGRTGSGKSSLSLAFFRMVD-IFDG   76 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcccC-CCCC
Confidence            4778999999999999999999998765 4444

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=93.56  E-value=0.05  Score=44.63  Aligned_cols=28  Identities=14%  Similarity=0.299  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         26 PTGKITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678899999999999999999988654

>cd00879 Sar1 Sar1 subfamily

Probab=93.56  E-value=0.14  Score=39.49  Aligned_cols=34  Identities=21%  Similarity=0.182  Sum_probs=25.7

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .++..|-...+.-.|++.|.+|+|||+..+.+..
T Consensus         8 ~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~   41 (190)
T cd00879           8 NVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKD   41 (190)
T ss_pred             HHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            3455554455566799999999999999887764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=93.56  E-value=0.065  Score=45.09  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=22.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -++|.|++|+|||+.++.+.+.+.
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~   83 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILH   83 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHH
Confidence            599999999999999999998887

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.55  E-value=0.067  Score=43.61  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   55 (252)
T PRK14272         28 QRGTVNALIGPSGCGKTTFLRAINRMHD   55 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4788999999999999999999988653

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.54  E-value=0.05  Score=45.33  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=26.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus        28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~-p~~G   59 (277)
T PRK13652         28 PRNSRIAVIGPNGAGKSTLFRHFNGILK-PTSG   59 (277)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCce
Confidence            4788999999999999999999998665 4444

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=93.53  E-value=0.073  Score=43.61  Aligned_cols=26  Identities=23%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...+|.|++|||||+..+.|.-.|.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~   50 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG   50 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            56688999999999999988887765

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=93.53  E-value=0.12  Score=45.03  Aligned_cols=28  Identities=18%  Similarity=0.442  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-..|+|.|++|+|||+.++.+.+++.
T Consensus        36 p~~~~vli~G~~GtGKs~~ar~~~~~l~   63 (350)
T CHL00081         36 PKIGGVMIMGDRGTGKSTTIRALVDLLP   63 (350)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence            3446799999999999999999999987

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=93.52  E-value=0.048  Score=50.74  Aligned_cols=28  Identities=29%  Similarity=0.520  Sum_probs=25.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.|...+.
T Consensus        40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~   67 (623)
T PRK10261         40 QRGETLAIVGESGSGKSVTALALMRLLE   67 (623)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3678999999999999999999999875

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.52  E-value=0.053  Score=45.31  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=26.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|++|+|||+..+.|...+. ..+|
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~-p~~G   62 (279)
T PRK13635         31 YEGEWVAIVGHNGSGKSTLAKLLNGLLL-PEAG   62 (279)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC-CCCc
Confidence            4778899999999999999999988765 4433

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=93.51  E-value=0.09  Score=44.06  Aligned_cols=28  Identities=21%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+.|++.|.+|+|||+++..+..++.
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~   97 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLK   97 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3567899999999999999999988877

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=93.50  E-value=0.052  Score=45.92  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=27.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.+.|++|||||+..|.+...+. ..+|
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G   60 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSG   60 (293)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcC-CCce
Confidence            3677899999999999999999999877 4443

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=93.50  E-value=0.047  Score=49.85  Aligned_cols=28  Identities=21%  Similarity=0.393  Sum_probs=25.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|.+.+.|+||||||+..+.+...+.
T Consensus       347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~  374 (547)
T PRK10522        347 KRGELLFLIGGNGSGKSTLAMLLTGLYQ  374 (547)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            5778999999999999999999999765

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=93.50  E-value=0.08  Score=41.40  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=23.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|.++|..|+|||+.++++...|.
T Consensus         6 mki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           6 MKIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             eEEEEeCCCCccHHHHHHHHHHHHH
Confidence            3589999999999999999999888

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=93.49  E-value=0.045  Score=47.79  Aligned_cols=32  Identities=31%  Similarity=0.555  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.++|.|.||||||+..+.|...+. ..+|
T Consensus        17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~-p~~G   48 (363)
T TIGR01186        17 AKGEIFVIMGLSGSGKSTTVRMLNRLIE-PTAG   48 (363)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCC-CCce
Confidence            4678999999999999999999998776 4443

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG3354|consensus

Probab=93.49  E-value=0.07  Score=41.55  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=22.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|-||+|||+..+.+.+-|.
T Consensus        14 ~i~vmGvsGsGKSTigk~L~~~l~   37 (191)
T KOG3354|consen   14 VIVVMGVSGSGKSTIGKALSEELG   37 (191)
T ss_pred             eEEEEecCCCChhhHHHHHHHHhC
Confidence            699999999999999999998776

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=93.49  E-value=0.067  Score=44.65  Aligned_cols=28  Identities=14%  Similarity=0.243  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678899999999999999999988664

>PRK06921 hypothetical protein; Provisional

Probab=93.48  E-value=0.19  Score=42.01  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=24.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|.|++|+|||+.+..|.+.+.
T Consensus       116 ~~~~l~l~G~~G~GKThLa~aia~~l~  142 (266)
T PRK06921        116 RKNSIALLGQPGSGKTHLLTAAANELM  142 (266)
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence            467899999999999999999999877

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.47  E-value=0.054  Score=45.23  Aligned_cols=32  Identities=22%  Similarity=0.485  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.|.|.+|||||+..+.+...+. ..+|
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-p~~G   62 (279)
T PRK13650         31 KQGEWLSIIGHNGSGKSTTVRLIDGLLE-AESG   62 (279)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            4778899999999999999999998765 4443

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=93.47  E-value=0.068  Score=41.56  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=21.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+..|+|.||+|+||+..++.|-+.
T Consensus        20 ~~~~pVlI~GE~GtGK~~lA~~IH~~   45 (168)
T PF00158_consen   20 SSDLPVLITGETGTGKELLARAIHNN   45 (168)
T ss_dssp             TSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence            45578999999999999999998774

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=93.46  E-value=0.063  Score=43.64  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|.+|||||+..+.+...+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         25 RPGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            467899999999999999999988863

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=93.46  E-value=0.075  Score=40.18  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=23.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3668999999999999999888877544

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00017 cmk cytidylate kinase

Probab=93.44  E-value=0.075  Score=43.03  Aligned_cols=24  Identities=33%  Similarity=0.497  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|.|.+|||||+.++.+.+.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         4 IIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999987655

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PLN02796 D-glycerate 3-kinase

Probab=93.43  E-value=0.15  Score=44.28  Aligned_cols=25  Identities=32%  Similarity=0.448  Sum_probs=22.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      =.|.|+|.+|||||+.++.+...+.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~~lL~  125 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALVYLFN  125 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3488999999999999999998876

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=93.43  E-value=0.067  Score=44.86  Aligned_cols=24  Identities=33%  Similarity=0.430  Sum_probs=20.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|+++|-.|||||+.++.+.++|.
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~   26 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLE   26 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH
Confidence            489999999999999999999988

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=93.43  E-value=0.065  Score=46.64  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...+.+.|.|||||||+.|.|--+-.
T Consensus        30 ~Gef~~lLGPSGcGKTTlLR~IAGfe~   56 (352)
T COG3842          30 KGEFVTLLGPSGCGKTTLLRMIAGFEQ   56 (352)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            556788999999999999999888755

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=93.43  E-value=0.054  Score=49.82  Aligned_cols=32  Identities=16%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|+||||||+..+.+.+++. ..+|
T Consensus       364 ~~G~~~aivG~sGsGKSTL~~ll~g~~~-p~~G  395 (574)
T PRK11160        364 KAGEKVALLGRTGCGKSTLLQLLTRAWD-PQQG  395 (574)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCc
Confidence            6888999999999999999999999876 4444

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.43  E-value=0.055  Score=45.30  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|++|||||+..+.|...+. ..+|
T Consensus        30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~-p~~G   61 (283)
T PRK13636         30 KKGEVTAILGGNGAGKSTLFQNLNGILK-PSSG   61 (283)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-CCcc
Confidence            4788999999999999999999998765 4433

>PRK05439 pantothenate kinase; Provisional

Probab=93.42  E-value=0.14  Score=43.78  Aligned_cols=28  Identities=18%  Similarity=0.284  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+-.|.|+|.+|||||+.++.+...+.
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~  111 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLS  111 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4555788999999999999999988765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.41  E-value=0.072  Score=44.43  Aligned_cols=28  Identities=21%  Similarity=0.223  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778899999999999999999988654

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=93.41  E-value=0.063  Score=42.80  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=21.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...++++|++|+|||+..|.+....
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHH
Confidence            3789999999999999999887533

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=93.39  E-value=0.093  Score=35.21  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=21.5

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+++|..|+|||+.+..+.+.|.
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~l~   24 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAALA   24 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67889999999999999999998

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=93.39  E-value=0.12  Score=48.06  Aligned_cols=41  Identities=27%  Similarity=0.319  Sum_probs=28.6

Q ss_pred             HhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -++-+|-+-+... ...-.|.|.|.||||||+.++.|...+.
T Consensus        49 ~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp   90 (656)
T PLN02318         49 FVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP   90 (656)
T ss_pred             hhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence            3444554444432 2334678899999999999999998764

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=93.38  E-value=0.052  Score=48.00  Aligned_cols=32  Identities=31%  Similarity=0.529  Sum_probs=26.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|.+|||||+..+.|...+. ..+|
T Consensus        52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~-p~sG   83 (400)
T PRK10070         52 EEGEIFVIMGLSGSGKSTMVRLLNRLIE-PTRG   83 (400)
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC-CCCC
Confidence            4778999999999999999999998765 4333

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=93.38  E-value=0.073  Score=44.08  Aligned_cols=32  Identities=22%  Similarity=0.419  Sum_probs=26.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.+.|.||+||||..+.|--+.. ..+|
T Consensus        27 ~~GEfvsilGpSGcGKSTLLriiAGL~~-p~~G   58 (248)
T COG1116          27 EKGEFVAILGPSGCGKSTLLRLIAGLEK-PTSG   58 (248)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            4788999999999999999999888766 4433

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.37  E-value=0.056  Score=45.41  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|.+|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (290)
T PRK13634         31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQ   58 (290)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=93.36  E-value=0.16  Score=40.27  Aligned_cols=36  Identities=25%  Similarity=0.355  Sum_probs=28.6

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +|.+.++ ...++.+++.|..|+|||+..+.+.+.+.
T Consensus         8 ~a~~~~l-~~~~~~~~l~G~aGtGKT~~l~~~~~~~~   43 (196)
T PF13604_consen    8 EAVRAIL-TSGDRVSVLQGPAGTGKTTLLKALAEALE   43 (196)
T ss_dssp             HHHHHHH-HCTCSEEEEEESTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHH-hcCCeEEEEEECCCCCHHHHHHHHHHHHH
Confidence            3444444 34668899999999999999999999887

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=93.36  E-value=0.054  Score=46.00  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.|.|.+|||||+..+.+...+. ..+|
T Consensus        31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~-p~~G   62 (305)
T PRK13651         31 NQGEFIAIIGQTGSGKTTFIEHLNALLL-PDTG   62 (305)
T ss_pred             eCCCEEEEECCCCCcHHHHHHHHhCCCC-CCCc
Confidence            4778999999999999999999998765 4333

>PRK13975 thymidylate kinase; Provisional

Probab=93.36  E-value=0.075  Score=41.47  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=23.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-|++.|..|||||+.++.+-+.|-
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999999876

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.36  E-value=0.074  Score=44.62  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         63 PENQVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            478899999999999999999998765

>TIGR01351 adk adenylate kinases

Probab=93.36  E-value=0.068  Score=42.61  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |++.|.+|||||+.++.+.+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            8899999999999999988754

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=93.35  E-value=0.13  Score=47.95  Aligned_cols=32  Identities=31%  Similarity=0.277  Sum_probs=26.7

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......++.++|.|++|+|||+.++.+.+...
T Consensus       169 ~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~  200 (615)
T TIGR02903       169 KVASPFPQHIILYGPPGVGKTTAARLALEEAK  200 (615)
T ss_pred             HHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence            34456678899999999999999999988764

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=93.35  E-value=0.066  Score=43.06  Aligned_cols=28  Identities=18%  Similarity=0.342  Sum_probs=23.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..-+.+.|.||||||+..|+|+.-.-
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            3556688999999999999999988655

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=93.33  E-value=0.057  Score=45.33  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|.+|||||+..+.+...+.
T Consensus        31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~   58 (287)
T PRK13637         31 EDGEFVGLIGHTGSGKSTLIQHLNGLLK   58 (287)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            4778999999999999999999998765

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=93.33  E-value=0.13  Score=48.88  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=30.9

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.+....+...++|.|++|+|||+.++.+.+.+.
T Consensus        41 ~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~   77 (725)
T PRK13341         41 RLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR   77 (725)
T ss_pred             HHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence            4566677777778999999999999999999987653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=93.31  E-value=0.097  Score=45.17  Aligned_cols=32  Identities=31%  Similarity=0.524  Sum_probs=26.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+....||+|-||||||+..+.+=+..- ..+|
T Consensus        52 ~~GeIfViMGLSGSGKSTLvR~~NrLie-pt~G   83 (386)
T COG4175          52 EEGEIFVIMGLSGSGKSTLVRLLNRLIE-PTRG   83 (386)
T ss_pred             cCCeEEEEEecCCCCHHHHHHHHhccCC-CCCc
Confidence            3677889999999999999988877655 5554

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.31  E-value=0.077  Score=43.78  Aligned_cols=27  Identities=26%  Similarity=0.278  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.+...+
T Consensus        40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   66 (265)
T PRK14252         40 HEKQVTALIGPSGCGKSTFLRCFNRMH   66 (265)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            478899999999999999999998754

>PRK10436 hypothetical protein; Provisional

Probab=93.30  E-value=0.066  Score=48.26  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .=.|+++|.+|||||++...+++++.
T Consensus       218 ~GliLvtGpTGSGKTTtL~a~l~~~~  243 (462)
T PRK10436        218 QGLILVTGPTGSGKTVTLYSALQTLN  243 (462)
T ss_pred             CCeEEEECCCCCChHHHHHHHHHhhC
Confidence            33688999999999999999999875

>cd04163 Era Era subfamily

Probab=93.29  E-value=0.078  Score=38.97  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=20.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...|++.|.+|+|||+....++..
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999998887654

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.27  E-value=0.079  Score=43.34  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|.+|||||+..+.+...+
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNRMN   56 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            477889999999999999999998754

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=93.26  E-value=0.058  Score=49.17  Aligned_cols=32  Identities=31%  Similarity=0.520  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|+||||||+..+.+..++. ...|
T Consensus       342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G  373 (544)
T TIGR01842       342 QAGEALAIIGPSGSGKSTLARLIVGIWP-PTSG  373 (544)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            5788999999999999999999999876 4443

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=93.26  E-value=0.063  Score=49.29  Aligned_cols=32  Identities=25%  Similarity=0.432  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|+||||||+..+.+..++. ..+|
T Consensus       339 ~~G~~~~ivG~sGsGKSTLl~ll~g~~~-p~~G  370 (569)
T PRK10789        339 KPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEG  370 (569)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC-CCCC
Confidence            5788999999999999999999999876 4444

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=93.25  E-value=0.23  Score=42.95  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=26.6

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..-.|.++|.+|||||+.+..+..++.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56778999999999999999999999887

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=93.25  E-value=0.057  Score=44.30  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.|...+.
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        25 PPGSLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678999999999999999999988655

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=93.23  E-value=0.058  Score=50.18  Aligned_cols=28  Identities=25%  Similarity=0.464  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.|...+.
T Consensus       348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~  375 (623)
T PRK10261        348 WPGETLSLVGESGSGKSTTGRALLRLVE  375 (623)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            4677899999999999999999998765

>PRK00023 cmk cytidylate kinase; Provisional

Probab=93.23  E-value=0.087  Score=42.81  Aligned_cols=26  Identities=27%  Similarity=0.440  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-.|.+.|.+|||||+.++.+.+.+-
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~   29 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLG   29 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35689999999999999999998774

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=93.21  E-value=0.053  Score=47.12  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.|...+.
T Consensus        28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~   55 (356)
T PRK11650         28 ADGEFIVLVGPSGCGKSTLLRMVAGLER   55 (356)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence            3678899999999999999999988765

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.21  E-value=0.089  Score=42.90  Aligned_cols=27  Identities=19%  Similarity=0.268  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|.+|||||+..+.+...+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (250)
T PRK14266         27 PKNSVTALIGPSGCGKSTFIRTLNRMN   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            477899999999999999999998754

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=93.21  E-value=0.14  Score=48.94  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=29.7

Q ss_pred             HHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         87 AYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        87 a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      .+++.+.. +-.+.++|+|..|.|||++++.+.+.|.|
T Consensus        27 ~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC   64 (830)
T PRK07003         27 ALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC   64 (830)
T ss_pred             HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            44454554 44788999999999999999999998863

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=93.21  E-value=0.063  Score=43.51  Aligned_cols=28  Identities=25%  Similarity=0.470  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|+|||+..+.+...+.
T Consensus        23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~   50 (235)
T cd03299          23 ERGDYFVILGPTGSGKSVLLETIAGFIK   50 (235)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4788999999999999999998877654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=93.21  E-value=0.083  Score=41.46  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=23.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|++.|.-|||||+..|.+-+.|-
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L~   27 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKALN   27 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHcC
Confidence            46799999999999999999988776

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=93.19  E-value=0.18  Score=46.87  Aligned_cols=54  Identities=28%  Similarity=0.295  Sum_probs=37.2

Q ss_pred             HHHhcCCCCCCC--chHHHhHHHHHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHhh
Q psy18111         66 RAYRTRGPFQLP--PHIFAIAGSAYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIAC  123 (186)
Q Consensus        66 ~~y~~~~~~~~~--PHi~~~a~~a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~  123 (186)
                      .+|+.....++-  +|+-    ..+.+.+ ..+-+++++|+|+.|.|||+.++.+.+.|.|
T Consensus         8 ~KyRP~~F~dIIGQe~iv----~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C   64 (605)
T PRK05896          8 RKYRPHNFKQIIGQELIK----KILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC   64 (605)
T ss_pred             HHhCCCCHHHhcCcHHHH----HHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence            455544443333  3333    3444444 3466889999999999999999999999863

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=93.18  E-value=0.057  Score=47.11  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+.|.|+||||||+..+.|...+.
T Consensus        28 ~Ge~~~l~G~nGsGKSTLL~~iaGl~~   54 (369)
T PRK11000         28 EGEFVVFVGPSGCGKSTLLRMIAGLED   54 (369)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            668899999999999999999988665

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.17  E-value=0.085  Score=43.10  Aligned_cols=28  Identities=25%  Similarity=0.293  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4778999999999999999999988654

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=93.17  E-value=0.24  Score=42.81  Aligned_cols=56  Identities=21%  Similarity=0.230  Sum_probs=39.1

Q ss_pred             HHHHhcCCCCCCCchHHHhHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         65 ARAYRTRGPFQLPPHIFAIAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        65 ~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+.....++--|-.  +.+.+.+.... +-++.++|.|+.|.|||+.++.+.+.+.
T Consensus         8 ~~k~rP~~~~~iig~~~--~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~   64 (367)
T PRK14970          8 ARKYRPQTFDDVVGQSH--ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN   64 (367)
T ss_pred             HHHHCCCcHHhcCCcHH--HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45666655555543433  23445555444 4567999999999999999999999886

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=93.14  E-value=0.067  Score=43.21  Aligned_cols=28  Identities=29%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|+|||+..+.+...+.
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~   51 (232)
T cd03300          24 KEGEFFTLLGPSGCGKTTLLRLIAGFET   51 (232)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778999999999999999999988765

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=93.14  E-value=0.16  Score=41.63  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=32.0

Q ss_pred             hHHHHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         83 IAGSAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        83 ~a~~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+++|..|... ....+-.+.|+.|+||||+.|.+-+.|.
T Consensus        17 lt~r~~~~l~~al~~~~~~~~~GpagtGKtetik~La~~lG   57 (231)
T PF12774_consen   17 LTDRCFLTLTQALSLNLGGALSGPAGTGKTETIKDLARALG   57 (231)
T ss_dssp             HHHHHHHHHHHHHCTTTEEEEESSTTSSHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHhccCCCCCCcCCCCCCchhHHHHHHHHhC
Confidence            456777766443 6778899999999999999999988665

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=93.14  E-value=0.076  Score=44.10  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|.+|||||+..+.+...+.
T Consensus        49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~   76 (272)
T PRK14236         49 PKNRVTAFIGPSGCGKSTLLRCFNRMND   76 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4788999999999999999999988653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=93.13  E-value=0.083  Score=43.92  Aligned_cols=28  Identities=25%  Similarity=0.336  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         48 YEGDVIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4788999999999999999999988654

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=93.11  E-value=0.064  Score=44.77  Aligned_cols=28  Identities=21%  Similarity=0.463  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   61 (280)
T PRK13633         34 KKGEFLVILGRNGSGKSTIAKHMNALLI   61 (280)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778899999999999999999988765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=93.10  E-value=0.071  Score=39.37  Aligned_cols=23  Identities=26%  Similarity=0.353  Sum_probs=20.0

Q ss_pred             EEecCCCCCchhHHHHHHH--HHHh
Q psy18111        100 IIVSGESGSGKTQAASMVV--YFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il--~~l~  122 (186)
                      |++.|.+|+|||+..+.+.  .+..
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~   26 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLA   26 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCcee
Confidence            7899999999999999999  4444

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=93.07  E-value=0.063  Score=45.58  Aligned_cols=32  Identities=25%  Similarity=0.501  Sum_probs=26.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.+.|.+|||||+..+.+...+. ..+|
T Consensus        31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~-p~~G   62 (306)
T PRK13537         31 QRGECFGLLGPNGAGKTTTLRMLLGLTH-PDAG   62 (306)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC-CCce
Confidence            4778999999999999999999998765 4333

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=93.05  E-value=0.067  Score=48.11  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~   54 (490)
T PRK10938         27 NAGDSWAFVGANGSGKSALARALAGELP   54 (490)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999998765

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=93.05  E-value=0.086  Score=43.02  Aligned_cols=26  Identities=23%  Similarity=0.363  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+.|.|.+|||||+..+.+...
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         27 EEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            36788999999999999999999865

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=93.05  E-value=0.065  Score=49.44  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=27.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...+.+.+.|+||||||+..+.++.++. ..+|
T Consensus       359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~-~~~G  390 (585)
T TIGR01192       359 KAGQTVAIVGPTGAGKTTLINLLQRVYD-PTVG  390 (585)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHccCCC-CCCC
Confidence            5789999999999999999999999876 4444

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=93.05  E-value=0.064  Score=46.47  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.|...+.
T Consensus        21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~   48 (354)
T TIGR02142        21 PGQGVTAIFGRSGSGKTTLIRLIAGLTR   48 (354)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3668899999999999999999988765

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PTZ00088 adenylate kinase 1; Provisional

Probab=93.04  E-value=0.11  Score=42.55  Aligned_cols=26  Identities=23%  Similarity=0.226  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|++.|.+|||||+.++.+.+.+.
T Consensus         6 ~mrIvl~G~PGsGK~T~a~~La~~~g   31 (229)
T PTZ00088          6 PLKIVLFGAPGVGKGTFAEILSKKEN   31 (229)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45699999999999999999988654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=93.04  E-value=0.088  Score=40.54  Aligned_cols=24  Identities=33%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++++.|++|+|||..+..++...+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~   24 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGL   24 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            378999999999999888877665

A related protein is found in archaea.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=93.04  E-value=0.087  Score=44.14  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..+.+...+.
T Consensus        28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            5778999999999999999999998864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=93.03  E-value=0.061  Score=49.24  Aligned_cols=32  Identities=22%  Similarity=0.471  Sum_probs=27.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.|.+.+.|+||||||+..+.+.+++. ..+|
T Consensus       366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~-p~~G  397 (555)
T TIGR01194       366 AQGDIVFIVGENGCGKSTLAKLFCGLYI-PQEG  397 (555)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC-CCCc
Confidence            5788999999999999999999999776 4444

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK04195 replication factor C large subunit; Provisional

Probab=93.02  E-value=0.12  Score=46.70  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|+|++|+|||+.++.+.+.+-
T Consensus        38 ~~~~lLL~GppG~GKTtla~ala~el~   64 (482)
T PRK04195         38 PKKALLLYGPPGVGKTSLAHALANDYG   64 (482)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            367899999999999999999988664

>PRK07429 phosphoribulokinase; Provisional

Probab=93.00  E-value=0.1  Score=45.01  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-.|.|.|.||||||+.++.+.+.|-
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~   33 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLG   33 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence            344688899999999999999998764

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=92.99  E-value=0.089  Score=44.12  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+..+.|...+
T Consensus        63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~   89 (286)
T PRK14275         63 LSKYVTAIIGPSGCGKSTFLRAINRMN   89 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            477899999999999999999998753

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=92.97  E-value=0.078  Score=48.92  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      =-|+++|.+|||||++...+++++.
T Consensus       317 Glilv~G~tGSGKTTtl~a~l~~~~  341 (564)
T TIGR02538       317 GMVLVTGPTGSGKTVSLYTALNILN  341 (564)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhhC
Confidence            3578999999999999999999875

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=92.97  E-value=0.085  Score=45.20  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+-+.+.|+||||||+..+.|--...
T Consensus        26 ~~Ge~vaLlGpSGaGKsTlLRiIAGLe~   53 (345)
T COG1118          26 KSGELVALLGPSGAGKSTLLRIIAGLET   53 (345)
T ss_pred             cCCcEEEEECCCCCcHHHHHHHHhCcCC
Confidence            3677899999999999999988877665

>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]

Probab=92.97  E-value=0.079  Score=45.01  Aligned_cols=25  Identities=24%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...-|+|+|+||+||||++-.+++-
T Consensus       144 ~GvGVLItG~SG~GKSElALeLi~r  168 (308)
T COG1493         144 FGVGVLITGPSGAGKSELALELIKR  168 (308)
T ss_pred             eeeEEEEECCCCCCHhHHHHHHHHh
Confidence            3456999999999999998777774

>PRK09183 transposase/IS protein; Provisional

Probab=92.96  E-value=0.1  Score=43.30  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.++|.|++|+|||+.+..+...++
T Consensus       101 ~~~~v~l~Gp~GtGKThLa~al~~~a~  127 (259)
T PRK09183        101 RNENIVLLGPSGVGKTHLAIALGYEAV  127 (259)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999876655

>PRK01184 hypothetical protein; Provisional

Probab=92.95  E-value=0.083  Score=40.98  Aligned_cols=18  Identities=39%  Similarity=0.490  Sum_probs=15.9

Q ss_pred             EEEecCCCCCchhHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASM  116 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~  116 (186)
                      .|+++|.+|||||+.++.
T Consensus         3 ~i~l~G~~GsGKsT~a~~   20 (184)
T PRK01184          3 IIGVVGMPGSGKGEFSKI   20 (184)
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            488999999999998873

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=92.94  E-value=0.07  Score=44.78  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|.+|||||+..+.+...+.
T Consensus        30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~   57 (288)
T PRK13643         30 KKGSYTALIGHTGSGKSTLLQHLNGLLQ   57 (288)
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4788999999999999999999988655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	186
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		2e-48
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		2e-48
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		3e-35
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		3e-35
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		3e-35
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		3e-35
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		4e-35
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		4e-35
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		4e-35
2x51_A	789	M6 Delta Insert1 Length = 789		4e-35
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		4e-35
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		4e-35
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		4e-35
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		4e-35
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		9e-35
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		2e-34
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		2e-34
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		2e-34
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		2e-34
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		2e-34
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		2e-33
2y0r_X	758	Structural Basis For The Allosteric Interference Of		7e-33
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		7e-33
2y9e_X	758	Structural Basis For The Allosteric Interference Of		7e-33
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		7e-33
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-33
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		8e-33
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		8e-33
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-33
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-33
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		8e-33
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		8e-33
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-33
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		8e-33
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		8e-33
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		8e-33
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		8e-33
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		8e-33
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		8e-33
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		9e-33
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		9e-33
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-32
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-32
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		2e-32
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		3e-32
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		1e-31
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		8e-31
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		3e-30
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		3e-30
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		3e-30
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		1e-29
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		1e-29
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		4e-29
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		3e-28
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		4e-28
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		4e-28
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		4e-28
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		5e-28
1b7t_A	835	Myosin Digested By Papain Length = 835		5e-28
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		1e-27

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score =  188 bits (477), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 123/173 (71%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY     +AY  R
Sbjct: 9   GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGR 68
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
             +++PPH++A+A  AYR +R   E+QC+I+SGESG+GKT+A+  ++ F+   +    P 
Sbjct: 69  YKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 128
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              + + L    PLLEAFGNA+TL+NDNSSRFGKY++++F+  G P+G  ITN
Sbjct: 129 GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITN 181

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 83/173 (47%), Positives = 123/173 (71%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY     +AY  R
Sbjct: 9   GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGR 68
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
             +++PPH++A+A  AYR +R   E+QC+I+SGESG+GKT+A+  ++ F+   +    P 
Sbjct: 69  YKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 128
Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
              + + L    PLLEAFGNA+TL+NDNSSRFGKY++++F+  G P+G  ITN
Sbjct: 129 GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITN 181

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 59  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 118
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 119 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 178
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 179 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 234
Query: 183 TN 184
           ++
Sbjct: 235 SH 236

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score =  144 bits (363), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 59  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 118
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 119 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 178
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 179 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 234
Query: 183 TN 184
           ++
Sbjct: 235 SH 236

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 46  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 105
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 106 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 165
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 166 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 221
Query: 183 TN 184
           ++
Sbjct: 222 SH 223

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 49  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 108
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 109 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 168
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 169 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 224
Query: 183 TN 184
           ++
Sbjct: 225 SH 226

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 50  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 109
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 110 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 169
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 170 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 225
Query: 183 TN 184
           ++
Sbjct: 226 SH 227

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 47  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 106
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 107 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 166
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 167 -ESYGTG---QDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 222
Query: 183 TN 184
           ++
Sbjct: 223 SH 224

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 49  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 108
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 109 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 168
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 169 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 224
Query: 183 TN 184
           ++
Sbjct: 225 SH 226

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 50  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 109
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 110 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 169
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 170 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 225
Query: 183 TN 184
           ++
Sbjct: 226 SH 227

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 49  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 108
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 109 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 168
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 169 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 224
Query: 183 TN 184
           ++
Sbjct: 225 SH 226

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 49  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 108
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 109 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 168
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 169 -ESYGTG---QDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 224
Query: 183 TN 184
           ++
Sbjct: 225 SH 226

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 50  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 109
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 110 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 169
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 170 -ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 225
Query: 183 TN 184
           ++
Sbjct: 226 SH 227

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score =  144 bits (362), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 74/182 (40%), Positives = 116/182 (63%), Gaps = 5/182 (2%)
Query: 4   PLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSA 62
           P   DS+    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  IYS+
Sbjct: 49  PAEEDSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSS 108
Query: 63  ELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA 122
           E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ ++ 
Sbjct: 109 ETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT 168
Query: 123 CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             + GTG     + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G  +
Sbjct: 169 -ESYGTG---QDIYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVGGFV 224
Query: 183 TN 184
           ++
Sbjct: 225 SH 226

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score =  142 bits (359), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACA------------TPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A              T G       + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACATPG----------TGPVLN--AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A                GP  +   + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACATPG----------TGPVLN--AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A                GP  +   + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score =  141 bits (356), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 111/194 (57%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACATPG----------TGPVLN--AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A                GP  +   + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACA------------TPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A              T G       + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/194 (40%), Positives = 110/194 (56%), Gaps = 16/194 (8%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192
Query: 121 IACA------------TPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A              T G       + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252
Query: 169 IEFDYKGDPLGAHI 182
           I FD  G  +GA+I
Sbjct: 253 INFDVTGYIVGANI 266

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/187 (41%), Positives = 109/187 (58%), Gaps = 9/187 (4%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP    +E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 54  MNPPKFSKAE----DMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIY 109
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH++A+   AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 110 TEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 169
Query: 121 IA-CATPGTGP----VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKG 175
           +A  A+   G     V   +  +L    P+LEAFGNA+T+KNDNSSRFGK++ I FD  G
Sbjct: 170 LAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 229
Query: 176 DPLGAHI 182
             +GA+I
Sbjct: 230 YIVGANI 236

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score =  136 bits (342), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 98  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 157
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 218 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 269

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 98  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 157
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 218 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 269

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 258

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASI 258

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score =  136 bits (342), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 98  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 157
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 218 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 269

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score =  135 bits (341), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 98  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 157
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 158 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 217
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 218 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 269

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score =  135 bits (341), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 86  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKIIPIYTQEMVDIFKGR 145
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 146 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 205
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I
Sbjct: 206 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISGASI 257

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score =  135 bits (339), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 108/176 (61%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+N+SRFGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQFNSAGFISGASI 258

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score =  134 bits (337), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/176 (39%), Positives = 107/176 (60%), Gaps = 9/176 (5%)
Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R
Sbjct: 87  GVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGR 146
Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACA-----TP 126
              ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ ++A         
Sbjct: 147 RRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQAN 206
Query: 127 GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
           G+G     + +++    P+LEAFGNA+T +N+NSS FGK+++I+F+  G   GA I
Sbjct: 207 GSG----VLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISGASI 258

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score =  129 bits (325), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 7/175 (4%)
Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D  +L  L E   + NL  RY    IYTY G   VTVNPYK L +Y+ E+  AYR +   
Sbjct: 89  DMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRS 148
Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPG------ 127
           + PPHIF+I+ +AY+++    E+Q I+++GESG+GKT     V+ YF   A  G      
Sbjct: 149 EAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKD 208
Query: 128 TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             P    + +++    P LEAFGNA+T++NDNSSRFGK++ I F   G    A I
Sbjct: 209 QSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGATGKLASADI 263

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Query: 3   PPLVV-DSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIY 60
           PPL   D   G  D   L  L E   + NL +R+     IYTY G VLV +NPY+ L IY
Sbjct: 60  PPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIY 119
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
             ++  AY  +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + +
Sbjct: 120 GEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRY 179
Query: 121 IACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
            A  + G+    N V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +GA
Sbjct: 180 FATVS-GSASEAN-VEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGA 237
Query: 181 HI 182
           ++
Sbjct: 238 NM 239

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Query: 3   PPLVV-DSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIY 60
           PPL   D   G  D   L  L E   + NL +R+     IYTY G VLV +NPY+ L IY
Sbjct: 60  PPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIY 119
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
             ++  AY  +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + +
Sbjct: 120 GEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRY 179
Query: 121 IACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
            A  + G+    N V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +GA
Sbjct: 180 FATVS-GSASEAN-VEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGA 237
Query: 181 HI 182
           ++
Sbjct: 238 NM 239

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score =  127 bits (320), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 107/182 (58%), Gaps = 4/182 (2%)
Query: 3   PPLVV-DSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIY 60
           PPL   D   G  D   L  L E   + NL +R+     IYTY G VLV +NPY+ L IY
Sbjct: 60  PPLRNPDILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIY 119
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
             ++  AY  +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + +
Sbjct: 120 GEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRY 179
Query: 121 IACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGA 180
            A  + G+    N V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +GA
Sbjct: 180 FATVS-GSASEAN-VEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGA 237
Query: 181 HI 182
           ++
Sbjct: 238 NM 239

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D  ++  L E   + NL  RY    IYTY G   VTVNPY  L +Y
Sbjct: 80  MNPPXYDXIE----DMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVY 135
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           +  +  AYR +   + PPHIF+I+ +AY+++    E+Q I+++GESG+GKT     V+ Y
Sbjct: 136 NPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQY 195
Query: 120 FIACATPG-------TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
           F   A  G       +G +   + +++    PLLEAFGNA T++NDNSSRFG ++ I F 
Sbjct: 196 FATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFG 255
Query: 173 YKGDPLGAHI 182
             G    A I
Sbjct: 256 ATGKLASADI 265

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 105/190 (55%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D  ++  L E   + NL  RY    IYTY G   VTVNPY  L +Y
Sbjct: 77  MNPPXYDXIE----DMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPYXWLPVY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           +  +  AYR +   + PPHIF+I+ +AY+++    E+Q I+++GESG+GKT     V+ Y
Sbjct: 133 NPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVIQY 192
Query: 120 FIACATPG-------TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
           F   A  G       +G +   + +++    PLLEAFGNA T++NDNSSRFG ++ I F 
Sbjct: 193 FATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIHFG 252
Query: 173 YKGDPLGAHI 182
             G    A I
Sbjct: 253 ATGKLASADI 262

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score =  124 bits (310), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 66/181 (36%), Positives = 103/181 (56%), Gaps = 13/181 (7%)
Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L+E + + NL  RY+   IYTY G   + +NPY+ L IY+  L   YR +   
Sbjct: 87  DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYRRLPIYTQGLVDKYRGKRRA 146
Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPGTG---- 129
           ++PPH+F+IA +AY+++    E+Q ++++GESG+GKT+    V+ YF   A    G    
Sbjct: 147 EMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVIQYFALVAASLAGKKDK 206
Query: 130 --------PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAH 181
                        + +++    P+LEA+GNA+T +N+NSSRFGK++ I F  +G   GA 
Sbjct: 207 KEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGKFIRIHFGTQGKIAGAD 266
Query: 182 I 182
           I
Sbjct: 267 I 267

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score =  120 bits (302), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 108/191 (56%), Gaps = 13/191 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + ++NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT++   V+ +
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVIMY 192
Query: 121 IACATPG-----TGPVLNA----VREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEF 171
            A            PV N     + +++    P+LEAFGNA+T++N+NSSRFGK++ I F
Sbjct: 193 FARVAANLYKQKEEPVPNLRASNLEDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIRIHF 252
Query: 172 DYKGDPLGAHI 182
              G   GA I
Sbjct: 253 GPTGKIAGADI 263

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192
Query: 121 ---IACATP-----GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
              +ACA        +     ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 193 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 252
Query: 173 YKGDPLGAHI 182
             G   GA I
Sbjct: 253 PTGKIAGADI 262

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 72  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 127
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 128 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 187
Query: 121 ---IACATP-----GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
              +ACA        +     ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 188 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 247
Query: 173 YKGDPLGAHI 182
             G   GA I
Sbjct: 248 PTGKIAGADI 257

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 73  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 128
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 129 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 188
Query: 121 ---IACATP-----GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
              +ACA        +     ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 189 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 248
Query: 173 YKGDPLGAHI 182
             G   GA I
Sbjct: 249 PTGKIAGADI 258

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192
Query: 121 ---IACATP-----GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
              +ACA        +     ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 193 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 252
Query: 173 YKGDPLGAHI 182
             G   GA I
Sbjct: 253 PTGKIAGADI 262

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 107/190 (56%), Gaps = 12/190 (6%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192
Query: 121 ---IACATP-----GTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
              +ACA        +     ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 193 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 252
Query: 173 YKGDPLGAHI 182
             G   GA I
Sbjct: 253 PTGKIAGADI 262

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/192 (34%), Positives = 107/192 (55%), Gaps = 14/192 (7%)
Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + ++NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYRRLPIY 132
Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192
Query: 121 ---IACATPG-------TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIE 170
              +ACA                ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I 
Sbjct: 193 LAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 252
Query: 171 FDYKGDPLGAHI 182
           F   G   GA I
Sbjct: 253 FGPTGKIAGADI 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	186
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	1e-85
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	7e-79
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	1e-76
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-76
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	3e-76
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	4e-76
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	6e-76
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	2e-73
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-71
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  264 bits (678), Expect = 1e-85
 Identities = 83/176 (47%), Positives = 123/176 (69%)

Query: 9   SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAY 68
              G  D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY     +AY
Sbjct: 6   KAEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAY 65

Query: 69  RTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGT 128
             R  +++PPH++A+A  AYR +R   E+QC+I+SGESG+GKT+A+  ++ F+   +   
Sbjct: 66  NGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQ 125

Query: 129 GPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITN 184
            P    + + L    PLLEAFGNA+TL+NDNSSRFGKY++++F+  G P+G  ITN
Sbjct: 126 SPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITN 181

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  248 bits (636), Expect = 7e-79
 Identities = 70/185 (37%), Positives = 112/185 (60%), Gaps = 9/185 (4%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NI 59
            +     D E    D   L  L+E T + N+ +RY +D IYTY+ N+L+ VNPY  +  I
Sbjct: 47  AEEDSKKDVE----DNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKI 102

Query: 60  YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
           YS+E  ++Y+ +    +PPH+FAIA  A+R ++     Q IIVSGESG+GKT+    V+ 
Sbjct: 103 YSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 162

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
           ++  +          + +++    PLLEAFGNA+T++N+NSSRFGK+++I F+ K   +G
Sbjct: 163 YLTESYGTGQD----IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNEKSSVVG 218

Query: 180 AHITN 184
             +++
Sbjct: 219 GFVSH 223

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  243 bits (622), Expect = 1e-76
 Identities = 71/191 (37%), Positives = 98/191 (51%), Gaps = 11/191 (5%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
            +PP          D  +L  L E   + NL  RY    IYTY G   VTVNPYK L +Y
Sbjct: 79  QNPP----KFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVY 134

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           + E+  AYR +   + PPHIF+I+ +AY+++    E+Q I+++GESG+GKT     V+ +
Sbjct: 135 TPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQY 194

Query: 121 IACATPGTGPVLNAVREKLKHI-------GPLLEAFGNAQTLKNDNSSRFGKYLDIEFDY 173
            A                   +        P LEAFGNA+T++NDNSSRFGK++ I F  
Sbjct: 195 FAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGA 254

Query: 174 KGDPLGAHITN 184
            G    A I  
Sbjct: 255 TGKLASADIET 265

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  245 bits (628), Expect = 2e-76
 Identities = 69/185 (37%), Positives = 107/185 (57%), Gaps = 5/185 (2%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
            +P      E    D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY
Sbjct: 80  RNPIKFDGVE----DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIY 135

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           + E+   ++ R   ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ Y
Sbjct: 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
             + A          + +++    P+LEAFGNA+T +N+NSS FGK+++I+F+  G   G
Sbjct: 196 LASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNNAGFISG 255

Query: 180 AHITN 184
           A I +
Sbjct: 256 ASIQS 260

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  242 bits (619), Expect = 3e-76
 Identities = 72/185 (38%), Positives = 105/185 (56%), Gaps = 7/185 (3%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNI 59
            +P ++V    G  D   L  L E   + NL +R+     IYTY G VLV +NPY+ L I
Sbjct: 63  RNPDILV----GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPI 118

Query: 60  YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
           Y  ++  AY  +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + 
Sbjct: 119 YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
           + A  +         V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +G
Sbjct: 179 YFATVSGSASEA--NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236

Query: 180 AHITN 184
           A++  
Sbjct: 237 ANMRT 241

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  241 bits (617), Expect = 4e-76
 Identities = 70/185 (37%), Positives = 108/185 (58%), Gaps = 5/185 (2%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
            +P        G  D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY
Sbjct: 80  RNPI----KFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIY 135

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           + E+   ++ R   ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ Y
Sbjct: 136 TQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQY 195

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
             + A          + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   G
Sbjct: 196 LASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNSAGFISG 255

Query: 180 AHITN 184
           A I +
Sbjct: 256 ASIQS 260

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  244 bits (624), Expect = 6e-76
 Identities = 77/189 (40%), Positives = 107/189 (56%), Gaps = 9/189 (4%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP    +E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 54  MNPPKFSKAE----DMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIY 109

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           +  +   YR +   ++PPH++A+   AYR +    EDQ I+ +GESG+GKT+    V+ Y
Sbjct: 110 TEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 169

Query: 120 FIACATPGTGPVLNAVREKLKHI----GPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKG 175
               A+   G     V  +L+       P+LEAFGNA+T+KNDNSSRFGK++ I FD  G
Sbjct: 170 LAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVAG 229

Query: 176 DPLGAHITN 184
             +GA+I  
Sbjct: 230 YIVGANIET 238

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  235 bits (601), Expect = 2e-73
 Identities = 68/192 (35%), Positives = 102/192 (53%), Gaps = 12/192 (6%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 77  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 132

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-Y 119
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ Y
Sbjct: 133 TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 192

Query: 120 FIACATPGTGPVLNAVREKLKHI-------GPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
               A         A  +K   +        P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 193 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 252

Query: 173 YKGDPLGAHITN 184
             G   GA I  
Sbjct: 253 PTGKIAGADIET 264

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  231 bits (591), Expect = 4e-71
 Identities = 71/185 (38%), Positives = 104/185 (56%), Gaps = 7/185 (3%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNI 59
            +P ++V       D   L  L E   + NL +R+     IYTY G VLV +NPY+ L I
Sbjct: 63  RNPDILVGEN----DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPI 118

Query: 60  YSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVY 119
           Y  ++  AY  +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + 
Sbjct: 119 YGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMR 178

Query: 120 FIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLG 179
           + A  +         V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +G
Sbjct: 179 YFATVSGSASEA--NVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIG 236

Query: 180 AHITN 184
           A++  
Sbjct: 237 ANMRT 241

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  218 bits (558), Expect = 1e-66
 Identities = 79/198 (39%), Positives = 110/198 (55%), Gaps = 16/198 (8%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   L  L+E + + NL  RY    IYTY G   V +NPYK L IY
Sbjct: 77  MNPPKFSKVE----DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIY 132

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           S ++   Y+ +   ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ +
Sbjct: 133 SEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQY 192

Query: 121 IA------------CATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD 168
           +A              T G       + ++L    P+LEAFGNA+T+KNDNSSRFGK++ 
Sbjct: 193 LAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIR 252

Query: 169 IEFDYKGDPLGAHITNCK 186
           I FD  G  +GA+I    
Sbjct: 253 INFDVTGYIVGANIETYL 270

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 34/119 (28%)

Query: 14  WDCVLLDPLSEDTFISNLHLR---YKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRT 70
           +   L+ P+  +    ++  R    +RD +Y            +   N+   +     R 
Sbjct: 93  F---LMSPIKTEQRQPSMMTRMYIEQRDRLYN-------DNQVFAKYNVSRLQPYLKLRQ 142

Query: 71  RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV--YFIACATPG 127
                               L +    + +++ G  GSGKT  A  V   Y + C    
Sbjct: 143 -------------------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	186
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.87
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.7
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.68
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.65
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.63
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.63
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.6
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.53
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.52
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.49
3bos_A	242	Putative DNA replication factor; P-loop containing	96.48
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.43
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.41
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.4
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.4
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.38
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.36
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.31
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.29
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.26
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.24
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.23
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.23
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.22
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.21
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.19
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.16
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.16
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.14
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.12
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.11
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.11
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.04
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.04
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.03
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.03
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.03
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.0
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.97
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.97
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.94
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.93
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.93
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.92
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.92
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.92
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.9
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.89
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	95.88
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	95.86
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	95.85
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	95.82
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	95.81
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.8
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	95.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	95.74
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.73
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.73
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.72
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.72
1via_A	175	Shikimate kinase; structural genomics, transferase	95.71
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	95.67
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.66
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.65
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.65
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.64
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.63
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.62
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	95.61
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	95.59
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.57
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	95.57
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.55
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.54
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.53
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.53
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.51
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	95.51
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.51
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	95.49
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.48
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.48
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.47
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	95.46
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.46
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	95.42
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.39
4a74_A	231	DNA repair and recombination protein RADA; hydrola	95.39
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.39
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	95.38
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.34
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	95.33
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.33
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	95.31
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.3
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.29
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.29
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.29
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.27
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.27
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	95.26
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.25
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.23
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.22
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	95.21
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.19
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.18
2og2_A	359	Putative signal recognition particle receptor; nuc	95.17
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.16
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	95.16
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.15
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.14
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.1
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.09
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	95.08
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.08
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.07
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.05
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.04
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.01
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.98
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.95
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.91
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.91
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.9
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	94.89
3pvs_A	447	Replication-associated recombination protein A; ma	94.87
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.85
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	94.85
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.84
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.84
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.83
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	94.83
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	94.81
1g6h_A	257	High-affinity branched-chain amino acid transport	94.81
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	94.78
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	94.78
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.76
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.76
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	94.76
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.75
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	94.73
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.71
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.65
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	94.65
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.64
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	94.64
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.64
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	94.64
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	94.63
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.63
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	94.63
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.62
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.59
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	94.58
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	94.57
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.56
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.56
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	94.54
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.54
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	94.51
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	94.5
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	94.48
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	94.45
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.44
3co5_A	143	Putative two-component system transcriptional RES	94.44
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	94.44
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	94.41
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	94.38
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	94.38
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.38
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.36
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.35
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.33
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.31
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.3
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.29
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	94.28
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	94.23
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	94.2
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	94.19
2hf9_A	226	Probable hydrogenase nickel incorporation protein	94.17
2cvh_A	220	DNA repair and recombination protein RADB; filamen	94.17
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.16
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.13
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	94.1
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.09
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	94.09
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.05
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	94.04
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.03
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	93.98
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	93.97
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	93.97
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	93.9
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	93.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.89
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	93.89
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	93.89
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	93.87
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	93.85
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	93.85
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.84
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	93.84
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.82
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	93.82
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	93.82
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	93.8
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	93.79
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.79
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	93.78
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	93.77
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	93.76
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	93.76
3kta_A	182	Chromosome segregation protein SMC; structural mai	93.73
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	93.73
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.72
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	93.72
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	93.71
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	93.66
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	93.66
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	93.65
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	93.65
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	93.63
2qgz_A	308	Helicase loader, putative primosome component; str	93.62
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	93.57
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.55
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	93.49
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.46
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	93.46
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	93.45
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	93.44
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.42
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.41
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	93.38
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	93.37
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.32
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	93.28
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	93.25
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	93.23
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	93.21
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	93.2
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	93.19
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	93.15
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	93.11
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	93.1
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	93.08
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	93.06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.04
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.02
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	93.02
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	93.01
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	92.87
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	92.78
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	92.76
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	92.75
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	92.75
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	92.67
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	92.63
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	92.58
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	92.55
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	92.51
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	92.5
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	92.45
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	92.39
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	92.37
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	92.28
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	92.19
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	92.17
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	92.16
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	91.99
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	91.97
3ice_A	422	Transcription termination factor RHO; transcriptio	91.95
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	91.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.89
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	91.89
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	91.85
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.84
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	91.8
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	91.68
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	91.64
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.64
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	91.63
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	91.63
2fna_A	357	Conserved hypothetical protein; structural genomic	91.62
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	91.57
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	91.56
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	91.48
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	91.36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	91.35
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	91.34
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	91.33
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	91.33
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	91.23
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	91.21
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	91.2
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	91.16
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.14
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.12
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	91.11
2wji_A	165	Ferrous iron transport protein B homolog; membrane	91.04
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	91.02
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	91.0
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	90.98
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	90.98
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	90.97
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	90.9
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	90.83
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	90.82
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	90.82
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	90.8
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	90.79
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	90.79
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	90.71
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	90.7
2ged_A	193	SR-beta, signal recognition particle receptor beta	90.64
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	90.55
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	90.53
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	90.52
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	90.44
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	90.42
2fh5_B	214	SR-beta, signal recognition particle receptor beta	90.37
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	90.35
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	90.31
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	90.3
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	90.26
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	90.24
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	90.22
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	90.17
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	90.17
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	90.15
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	90.14
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	90.11
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	90.09
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	90.08
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	90.06
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	90.06
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	90.0
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	89.99
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	89.94
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	89.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	89.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	89.92
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	89.91
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	89.83
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	89.8
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	89.75
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	89.73
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	89.69
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	89.67
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	89.65
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	89.62
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	89.62
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	89.6
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	89.58
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	89.55
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	89.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	89.52
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	89.49
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	89.48
2r44_A	331	Uncharacterized protein; putative ATPase, structur	89.48
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	89.4
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	89.4
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	89.37
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	89.37
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	89.31
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	89.29
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.28
1nrj_B	218	SR-beta, signal recognition particle receptor beta	89.21
2xxa_A	433	Signal recognition particle protein; protein trans	89.19
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	89.19
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	89.17
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	89.17
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	89.15
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	89.1
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	89.09
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	89.04
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	89.03
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	88.97
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	88.96
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	88.96
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	88.95
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	88.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	88.94
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	88.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	88.86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	88.86
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	88.84
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	88.8
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	88.74
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	88.67
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	88.67
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	88.66
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	88.65
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	88.64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	88.62
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	88.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	88.49
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	88.47
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	88.41
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	88.39
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	88.37
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	88.27
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	88.25
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	88.25
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	88.23
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	88.19
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	88.18
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	88.14
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	88.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.02
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	88.01
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	88.0
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	87.96
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	87.94
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	87.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	87.9
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	87.87
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	87.83
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	87.83
2r6a_A	454	DNAB helicase, replicative helicase; replication,	87.83
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	87.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	87.57
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	87.54
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	87.45
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	87.41
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	87.31
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	87.28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	87.28
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	87.04
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	87.04
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	87.0
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	86.92
2z43_A	324	DNA repair and recombination protein RADA; archaea	86.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	86.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	86.84
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	86.74
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	86.67
3b6e_A	216	Interferon-induced helicase C domain-containing P;	86.64
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	86.56
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	86.54
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	86.49
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	86.47
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	86.44
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	86.43
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	86.4
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	86.4
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	86.34
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	86.24
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	86.21
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	86.18
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	86.11
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	86.04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	86.04
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	86.02
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	85.91
3l0o_A	427	Transcription termination factor RHO; helicase, RH	85.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	85.81
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	85.8
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	85.73
1e69_A	322	Chromosome segregation SMC protein; structural mai	85.71
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	85.69
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	85.64
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	85.63
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	85.63
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	85.62
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	85.62
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	85.55
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	85.51
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	85.5
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	85.47
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	85.47
1u94_A	356	RECA protein, recombinase A; homologous recombinat	85.44
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	85.32
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	85.21
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	85.12
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	85.02
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	84.99
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	84.97

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=3.8e-62  Score=448.72  Aligned_cols=176  Identities=47%  Similarity=0.856  Sum_probs=167.9

Q ss_pred             CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      ..++|||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|++||+
T Consensus         7 ~~~~~Dl~~L~~l~E~~vl~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~   86 (697)
T 1lkx_A            7 AEGVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYR   86 (697)
T ss_dssp             --CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHH
T ss_pred             ccCCcccccCCCCCHHHHHHHHHHHHhcCCcEEeeCCeEEEEcCCcCCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC-CCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG-TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~-~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      +|+..++|||||++|||||||||++|++++||+ .+++ .+.....++++|+++||||||||||||++|+||||||||++
T Consensus        87 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla-~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~  165 (697)
T 1lkx_A           87 SMRQSQENQCVIISGESGAGKTEASKKIMQFLT-FVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYME  165 (697)
T ss_dssp             HHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH-HHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEE
T ss_pred             HHHhcCCCcEEEecCCCCCCchhhHHHHHHHHH-hhcCCCCCccccHHHHHHhcchHHHHhcCcccCCCCCcchhheeEE
Confidence            999999999999999999999999999999999 7776 33345689999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|.|+||+|++||
T Consensus       166 i~F~~~g~i~Ga~I~~yL  183 (697)
T 1lkx_A          166 MQFNAVGSPIGGKITNYL  183 (697)
T ss_dssp             EEECTTCCEEEEEEEEEC
T ss_pred             EEECCCCCEeeeeeeeee
Confidence            999999999999999997

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=4.4e-62  Score=452.20  Aligned_cols=176  Identities=40%  Similarity=0.632  Sum_probs=167.5

Q ss_pred             CCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         10 ETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        10 ~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      ..++|||+.|++|||++||++|+.||.+++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||+
T Consensus        84 ~~~~eDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~  163 (783)
T 4db1_A           84 FDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYKWLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQ  163 (783)
T ss_dssp             GTTCSBGGGCSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred             cCCcchhhccccccHHHHHHHHHHHhcCCceEEecCceeEecCCCccCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHH
Confidence            35799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCc--------hhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV--------LNAVREKLKHIGPLLEAFGNAQTLKNDNSS  161 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~--------~~~~~~~i~~~~~iLeaFgnakT~~N~nSS  161 (186)
                      +|+..+++||||++|||||||||++|++++||+ .+++.+..        ...++++|+++||||||||||||++|+|||
T Consensus       164 ~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla-~v~~~~~~~~~~~~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSS  242 (783)
T 4db1_A          164 YMLTDRENQSILITGESGAGKTVNTKRVIQYFA-VIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSS  242 (783)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHSBCCCC-------CCSCHHHHHHHHHHHHHHHHEECCSSCTTEE
T ss_pred             HHHhhCCCceEEEeCCCCCCCchHHHHHHHhhh-hhccCCCccccccccccccHHHHHHHhHHHHHhccCcccCCCCCCC
Confidence            999999999999999999999999999999999 76653321        256899999999999999999999999999


Q ss_pred             CceeeEEEEEcCCCCeeeeEecccC
Q psy18111        162 RFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       162 R~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||||++|+|+.+|.|+||+|++||
T Consensus       243 RFGK~i~i~F~~~g~i~Ga~I~~YL  267 (783)
T 4db1_A          243 RFGKFIRIHFGATGKLASADIETYL  267 (783)
T ss_dssp             CSEEEEEEEECTTSBEEEEEEEEEC
T ss_pred             ccceeEEEEECCCCCEeeeEEEEee
Confidence            9999999999999999999999997

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=1.2e-61  Score=460.03  Aligned_cols=175  Identities=42%  Similarity=0.742  Sum_probs=166.0

Q ss_pred             CCCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCC-CCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111          8 DSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLN-IYSAELARAYRTRGPFQLPPHIFAIAGS   86 (186)
Q Consensus         8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~-~y~~~~~~~y~~~~~~~~~PHi~~~a~~   86 (186)
                      +...++|||+.|++|||++||++|+.||.+++||||+|++||+||||+.+| +|+++++..|+++.+.++|||||++|+.
T Consensus        54 ~~~~~veDl~~L~~LnE~svL~nL~~Ry~~~~IYTy~G~iLIaVNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~  133 (1052)
T 4anj_A           54 DSKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADK  133 (1052)
T ss_dssp             CSSCCCSBGGGSSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHH
T ss_pred             CccCCCcccccCCCCCHHHHHHHHHHHHcCCCcEEeECCEEEEECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence            445689999999999999999999999999999999999999999999997 9999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY  166 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~  166 (186)
                      ||++|+..++|||||++|||||||||++|++++||+ ..++++   ..++++|+++||||||||||||.+|+||||||||
T Consensus       134 AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa-~~~~~~---~~ie~~Il~snpiLEAFGNAKT~rNdNSSRFGK~  209 (1052)
T 4anj_A          134 AFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT-ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKF  209 (1052)
T ss_dssp             HHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCC------CTTHHHHTHHHHHHHHEECCSSCTTEESSEEE
T ss_pred             HHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHH-HhcCCC---ccHHHHHHHHHHHHHhccCCCCCCCCCcCCceeE
Confidence            999999999999999999999999999999999999 666543   3578999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeeeeEecccC
Q psy18111        167 LDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       167 ~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ++|+|+.+|.|+||+|++||
T Consensus       210 iel~F~~~G~i~Ga~I~~YL  229 (1052)
T 4anj_A          210 VEIHFNEKSSVVGGFVSHYL  229 (1052)
T ss_dssp             EEEEECTTSCEEEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEEeccc
Confidence            99999999999999999997

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=2.4e-61  Score=448.49  Aligned_cols=174  Identities=41%  Similarity=0.675  Sum_probs=167.6

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHH-hcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry-~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      .++|||+.|+++||++||++|+.|| ..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|++||+
T Consensus        69 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~  148 (795)
T 1w7j_A           69 VGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK  148 (795)
T ss_dssp             TTCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhcccHHHHHHHHHHHHHhcccchhccCcceEEecCccccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHH
Confidence            6899999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEE
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDI  169 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l  169 (186)
                      +|+..++|||||++|||||||||++|++++||+ .+++... ...++++|+++||||||||||||++|+||||||||++|
T Consensus       149 ~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla-~~~~~~~-~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i  226 (795)
T 1w7j_A          149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFA-TVSGSAS-EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEI  226 (795)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHTCCSS-SSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEE
T ss_pred             HhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHH-hhcCCCC-ccchHHHHHHHHHHHHHhcCccCCCCCCccccceEEEE
Confidence            999999999999999999999999999999999 7776432 25789999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeeEecccC
Q psy18111        170 EFDYKGDPLGAHITNCK  186 (186)
Q Consensus       170 ~f~~~g~i~ga~i~~y~  186 (186)
                      +|+.+|.|+||+|++||
T Consensus       227 ~F~~~g~i~Ga~I~~YL  243 (795)
T 1w7j_A          227 GFDKRYRIIGANMRTYL  243 (795)
T ss_dssp             EECTTSCEEEEEEEEEC
T ss_pred             EECCCCCEeeeeceEEe
Confidence            99999999999999997

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=3.2e-61  Score=447.44  Aligned_cols=174  Identities=41%  Similarity=0.741  Sum_probs=163.4

Q ss_pred             CCCCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCC-CCCCHHHHHHHhcCCCCCCCchHHHhHHHH
Q psy18111          9 SETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPL-NIYSAELARAYRTRGPFQLPPHIFAIAGSA   87 (186)
Q Consensus         9 ~~~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l-~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a   87 (186)
                      ...++|||+.|++|||++||++|+.||..++||||+|++||+||||+.+ ++|+++++..|+++.+.++|||||++|++|
T Consensus        51 ~~~~~~Dl~~L~~L~E~svL~nL~~Ry~~~~IYTy~G~iLiaVNPyk~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~A  130 (784)
T 2v26_A           51 SKKDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKA  130 (784)
T ss_dssp             SSCCCSBGGGSSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHH
T ss_pred             cccccchhhhhhhccHHHHHHHHHHHHhcCceeeeccceEEEecCCcCcCCCCCHHHHHHHhCCCcccCCchHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999 699999999999999999999999999999


Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeE
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYL  167 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~  167 (186)
                      |++|+..+++||||++|||||||||++|++++||+ ..++.+   ..++++|+++||||||||||||++|+||||||||+
T Consensus       131 y~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla-~~~~~~---~~ie~~il~snpiLEAFGNAKT~rNdNSSRFGKfi  206 (784)
T 2v26_A          131 FRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLT-ESYGTG---QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFV  206 (784)
T ss_dssp             HHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHC---------CHHHHTHHHHHHHHEECCSSCTTEECSEEEE
T ss_pred             HHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHH-hhcCCC---CcHHHHHHHHHHHHHHhCCCcCCCCCCcchhheEE
Confidence            99999999999999999999999999999999999 665532   46889999999999999999999999999999999


Q ss_pred             EEEEcCCCCeeeeEecccC
Q psy18111        168 DIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       168 ~l~f~~~g~i~ga~i~~y~  186 (186)
                      +|+|+.+|.|+||+|++||
T Consensus       207 ~i~F~~~g~i~Ga~I~~YL  225 (784)
T 2v26_A          207 EIHFNEKSSVVGGFVSHYL  225 (784)
T ss_dssp             EEEECTTSCEEEEEEEEEC
T ss_pred             EEEEecCCcEeeeeeeeee
Confidence            9999999999999999997

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=3.4e-61  Score=445.35  Aligned_cols=175  Identities=39%  Similarity=0.689  Sum_probs=166.2

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||++
T Consensus        86 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLvavNPyk~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~  165 (770)
T 1w9i_A           86 DGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS  165 (770)
T ss_dssp             TTCSBGGGCSCCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhccCCHHHHHHHHHHHHhcCCceeccCceeEEecCCccccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--chhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      |+..+++||||++|||||||||++|++++||+ .+++...  ....++++|+++||||||||||||++|+||||||||++
T Consensus       166 m~~~~~nQsIiisGESGAGKTe~tK~i~~yla-~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~  244 (770)
T 1w9i_A          166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLA-SVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIE  244 (770)
T ss_dssp             HHHHCCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHCC------CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred             HHhhcCCcEEEEecCCCCcchHHHHHHHHHHH-HhccccCCcccCcHHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEE
Confidence            99999999999999999999999999999999 6665332  23679999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|.|+||+|++||
T Consensus       245 i~F~~~g~i~Ga~I~~yL  262 (770)
T 1w9i_A          245 IQFNSAGFISGASIQSYL  262 (770)
T ss_dssp             EEECTTSCEEEEEEEEEC
T ss_pred             EEECCCCCEeeeEEEEEe
Confidence            999999999999999997

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=3.3e-61  Score=449.50  Aligned_cols=175  Identities=35%  Similarity=0.614  Sum_probs=167.1

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||++
T Consensus        83 ~~~~Dl~~L~~l~E~svL~nL~~Ry~~~~IYTy~G~iLiavNPyk~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~  162 (837)
T 1kk8_A           83 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQN  162 (837)
T ss_dssp             TTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhcccHHHHHHHHHHHHhcCCceeeccceeEEeCCCcCCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--c-------hhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--V-------LNAVREKLKHIGPLLEAFGNAQTLKNDNSS  161 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~-------~~~~~~~i~~~~~iLeaFgnakT~~N~nSS  161 (186)
                      |+..++|||||++|||||||||++|++++||+ .+++...  .       ...++++|+++||||||||||||++|+|||
T Consensus       163 m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla-~~~~~~~~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSS  241 (837)
T 1kk8_A          163 MVTDRENQSCLITGESGAGKTENTKKVIMYLA-KVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSS  241 (837)
T ss_dssp             HHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEE
T ss_pred             HHhcCCCcEEEEeCCCCCCchhhHHHHHHHHH-HhcccCCcccccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCC
Confidence            99999999999999999999999999999999 7665332  1       257899999999999999999999999999


Q ss_pred             CceeeEEEEEcCCCCeeeeEecccC
Q psy18111        162 RFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       162 R~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||||++|+|+.+|.|+||+|++||
T Consensus       242 RFGKfi~i~F~~~g~i~Ga~I~~YL  266 (837)
T 1kk8_A          242 RFGKFIRIHFGPTGKIAGADIETYL  266 (837)
T ss_dssp             SSEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             CceeEEEEEECCCCCEeeeEEEEEe
Confidence            9999999999999999999999997

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=4.6e-60  Score=449.39  Aligned_cols=175  Identities=39%  Similarity=0.681  Sum_probs=167.6

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .+++||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||++
T Consensus        86 ~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~  165 (1010)
T 1g8x_A           86 DGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS  165 (1010)
T ss_dssp             TTCSBGGGCSSCCHHHHHHHHHHHHTTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHH
T ss_pred             cchhhhhhhhcccHHHHHHHHHHHHhhCCceeccCceeEEecCCccccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--chhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      |+..++|||||++|||||||||++|.+++||+ .+++...  ....++++|+++||||||||||||++|+||||||||++
T Consensus       166 m~~~~~~QsIiisGESGAGKTe~~K~i~~yla-~~~~~~~~~~~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~  244 (1010)
T 1g8x_A          166 MLDDRQNQSLLITGESGAGKTENTKKVIQYLA-SVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIE  244 (1010)
T ss_dssp             HHHHTCCEEEEEEESTTSSHHHHHHHHHHHHH-HHHCCCCTTTSSHHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEE
T ss_pred             HHhcCCCeEEEEeCCCCCCcchHHHHHHHHHH-HhcccCCCcccchHHHHHHHHHHHHHHhCCCcCCCCCCccccceEEE
Confidence            99999999999999999999999999999999 6665332  23689999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|.|+||+|++||
T Consensus       245 i~F~~~g~i~Ga~i~~yL  262 (1010)
T 1g8x_A          245 IQFNNAGFISGASIQSYL  262 (1010)
T ss_dssp             EEECTTSCEEEEEEEEEC
T ss_pred             EEECCCCCCcceEEEEEE
Confidence            999999999999999997

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=3.7e-60  Score=450.01  Aligned_cols=175  Identities=41%  Similarity=0.677  Sum_probs=166.3

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||++
T Consensus        60 ~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~iYTy~G~ilvavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~  139 (995)
T 2ycu_A           60 SKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYKQLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRS  139 (995)
T ss_dssp             TTCSBGGGCSSCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             cccchhhhhccccHHHHHHHHHHHHhcCceeeecCceeeeeCCccccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHH
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC--c----hhhHHHHHhhccchHHhhcCccccCCCCCCCce
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP--V----LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFG  164 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~--~----~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~g  164 (186)
                      |+..++||||||+|||||||||++|++++||+ .+++...  .    ...++++|+++||||||||||||++|+||||||
T Consensus       140 m~~~~~~QsIiisGESGAGKTe~~K~i~~yla-~~~~~~~~~~~~~~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFG  218 (995)
T 2ycu_A          140 MLQDREDQSILCTGESGAGKTENTKKVIQYLA-HVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFG  218 (995)
T ss_dssp             HHHHCCCEEEEEECBTTSSHHHHHHHHHHHHH-HHSCCSSSCSSSCCCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSE
T ss_pred             HHhcCCCcEEEecCCCCCCchhhHHHHHHHHH-HhcccCCccccccccccHHHHHHHHHHHHHHhcCccCCCCCCCCccc
Confidence            99999999999999999999999999999999 7765432  1    257889999999999999999999999999999


Q ss_pred             eeEEEEEcCCCCeeeeEecccC
Q psy18111        165 KYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       165 k~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ||++|+|+.+|.|+||+|++||
T Consensus       219 K~i~i~F~~~g~i~Ga~i~~yL  240 (995)
T 2ycu_A          219 KFIRINFDVAGYIVGANIETYL  240 (995)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEC
T ss_pred             eEEEEEECCCCCEeeeEEEEEe
Confidence            9999999999999999999997

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=6.6e-60  Score=451.13  Aligned_cols=174  Identities=41%  Similarity=0.675  Sum_probs=167.5

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHH-hcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYR   89 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry-~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~   89 (186)
                      .+++||+.|+++||++||++|+.|| ..++||||+|++||+||||+.+|+|+++++..|++....++|||||++|+.||+
T Consensus        69 ~~~~Dl~~L~~l~e~~vl~nL~~Ry~~~~~iYTy~G~iLiavNPyk~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~  148 (1080)
T 2dfs_A           69 VGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYK  148 (1080)
T ss_dssp             SSCSBSTTCSSCSHHHHHHHHHHHHHTTCCCEEEETTEEEEECCSSCCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHH
T ss_pred             cchhhhhhhhhcchHHHHHHHHHHHHhcCCchhccCceeEEecCCcccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHH
Confidence            6899999999999999999999999 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEE
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDI  169 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l  169 (186)
                      +|+..++|||||++|||||||||++|.+++||+ .+++... ...++++|+++||||||||||||++|+||||||||++|
T Consensus       149 ~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla-~~~~~~~-~~~ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i  226 (1080)
T 2dfs_A          149 QMARDERNQSIIVSGESGAGKTVSAKYAMRYFA-TVSGSAS-EANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEI  226 (1080)
T ss_dssp             HHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTTCCT-TTCTHHHHHHHHHHHHHHHEEEETTEEEEECSEEEEEE
T ss_pred             HHHhcCCCcEEEEcCCCCCCccchHHHHHHHHH-hhccCCC-ccchHHHHHHHHHHHHHhcCCcCCCCCCccccceeEEE
Confidence            999999999999999999999999999999999 7776442 25789999999999999999999999999999999999


Q ss_pred             EEcCCCCeeeeEecccC
Q psy18111        170 EFDYKGDPLGAHITNCK  186 (186)
Q Consensus       170 ~f~~~g~i~ga~i~~y~  186 (186)
                      +|+.+|.|+||+|++||
T Consensus       227 ~F~~~g~i~Ga~i~~yL  243 (1080)
T 2dfs_A          227 GFDKRYRIIGANMRTYL  243 (1080)
T ss_dssp             EECTTCCEEEEEEEEEC
T ss_pred             EECCCCCEeeecceeEe
Confidence            99999999999999997

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=1.3e-59  Score=453.81  Aligned_cols=175  Identities=42%  Similarity=0.686  Sum_probs=167.1

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .+++||+.|+++||++||++|+.||..++||||+|++||+||||+.+|+|+++++..|+++.+.++|||||++|+.||++
T Consensus        83 ~~~~Dl~~l~~l~e~~vl~~L~~Ry~~~~iyT~~g~~li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~  162 (1184)
T 1i84_S           83 SKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRS  162 (1184)
T ss_dssp             TTCSBTTSSSCCCTTHHHHHHHHHHHHTCCEEEETTEEEEECCCSCCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHH
T ss_pred             cccchhhhhccccHHHHHHHHHHHhcCCCcEEecCcceeeeCCCcCCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCc-------------hhhHHHHHhhccchHHhhcCccccCC
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV-------------LNAVREKLKHIGPLLEAFGNAQTLKN  157 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~-------------~~~~~~~i~~~~~iLeaFgnakT~~N  157 (186)
                      |+..++||||||+||||||||+++|+|++||+ .+++....             ...++++|+++||||||||||||++|
T Consensus       163 m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla-~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN  241 (1184)
T 1i84_S          163 MLQDREDQSILCTGESGAGKTENTKKVIQYLA-VVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKN  241 (1184)
T ss_dssp             HHHHTCCEEEECCCSTTSSTTHHHHHHHHHHH-HHSSCCSCC------CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTE
T ss_pred             HHhcCCCcEEEEecCCCCCccHHHHHHHHHHH-HHhcCCCcccccccccccccccchHHHHHHHHHHHHHHhcCCcCCCC
Confidence            99999999999999999999999999999999 76654210             35789999999999999999999999


Q ss_pred             CCCCCceeeEEEEEcCCCCeeeeEecccC
Q psy18111        158 DNSSRFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       158 ~nSSR~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      +|||||||||+|+|+.+|.|+||+|.+||
T Consensus       242 ~NSSRfgk~~~i~f~~~g~i~ga~i~~yl  270 (1184)
T 1i84_S          242 DNSSRFGKFIRINFDVTGYIVGANIETYL  270 (1184)
T ss_dssp             EEEECSCEEEEEEECSSSCEEEEEEEECC
T ss_pred             ccccccceeEEEEECCCCCEeeeEEeEee
Confidence            99999999999999999999999999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.89  E-value=0.00066  Score=52.23  Aligned_cols=32  Identities=31%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|......+.|+|.|.+|||||+.++.+.+.+
T Consensus        22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            44555678899999999999999999998865

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.87  E-value=0.0011  Score=50.98  Aligned_cols=31  Identities=29%  Similarity=0.287  Sum_probs=27.1

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......+.|+|.|.||||||+.++.+.+.+.
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999999999874

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.76  E-value=0.0012  Score=49.65  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.++|.|++|+|||+.++.+...+.
T Consensus        36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           36 EEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             GGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3468899999999999999999999886

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.70  E-value=0.00093  Score=50.63  Aligned_cols=27  Identities=11%  Similarity=0.292  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.|+|+|.||||||+.++.+.+.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456899999999999999999998753

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.68  E-value=0.0016  Score=50.46  Aligned_cols=28  Identities=25%  Similarity=0.401  Sum_probs=25.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.|.|.|.||||||+.++.+...+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5778999999999999999999999886

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.65  E-value=0.00086  Score=50.68  Aligned_cols=30  Identities=27%  Similarity=0.495  Sum_probs=24.3

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      |..-.+.+.|++.|.+|||||+.++.+...
T Consensus         3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            3 MTDDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             ---CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             ccCCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            445567789999999999999999999875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.63  E-value=0.0023  Score=47.26  Aligned_cols=31  Identities=26%  Similarity=0.297  Sum_probs=26.8

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.......++|.|++|+|||+.++.+.+.+.
T Consensus        38 l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           38 LQRRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             HTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3445678899999999999999999999875

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.63  E-value=0.0012  Score=49.35  Aligned_cols=25  Identities=24%  Similarity=0.409  Sum_probs=22.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|+++|.||||||+.++.+.+.+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999998854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.60  E-value=0.0039  Score=46.01  Aligned_cols=31  Identities=26%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.......++|.|++|+|||+.++.+.+.+.
T Consensus        38 l~~~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           38 LSRRTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             HTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             HhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3446678899999999999999999999886

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.53  E-value=0.0013  Score=50.81  Aligned_cols=27  Identities=22%  Similarity=0.321  Sum_probs=22.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++|.|.||||||+..+.++..+.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            346799999999999999999999763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.52  E-value=0.0016  Score=49.70  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +.+.|+|.|.+|||||+.++.+...+
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            56789999999999999999999875

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.49  E-value=0.0016  Score=50.40  Aligned_cols=28  Identities=21%  Similarity=0.328  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.+...+.
T Consensus        18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           18 AVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4678999999999999999999999763

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.48  E-value=0.0041  Score=47.98  Aligned_cols=35  Identities=17%  Similarity=0.086  Sum_probs=28.8

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+......+.++|.|++|+|||+.++.+.+.+.
T Consensus        43 l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           43 LKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             HHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            34444445778999999999999999999998876

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.43  E-value=0.002  Score=47.81  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-|.|+|+|..|||||+.++.+-+.|-
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence            448999999999999999999988654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.42  E-value=0.0015  Score=50.27  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .....|+|+|.||||||+.++.+.+.+
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            366789999999999999999999876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.41  E-value=0.0016  Score=50.39  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.3

Q ss_pred             EEecCCCCCchhHHHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l  121 (186)
                      |||+|.||+|||+.++.+++-+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            8999999999999999998764

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.40  E-value=0.0017  Score=49.43  Aligned_cols=26  Identities=27%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +...|+|.|.+|||||+.++.+...+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            46789999999999999999999987

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.40  E-value=0.0023  Score=49.05  Aligned_cols=27  Identities=22%  Similarity=0.254  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+|.|.+|||||+.++.+.+.+-
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            557899999999999999999998654

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.38  E-value=0.0018  Score=50.20  Aligned_cols=28  Identities=29%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|+|+|.||||||+.++.+.+.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            4567899999999999999999998764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.36  E-value=0.0031  Score=51.11  Aligned_cols=34  Identities=26%  Similarity=0.392  Sum_probs=28.6

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+. -...+.+++.|.+|||||+..+.++.++.
T Consensus        17 l~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           17 VLELC-HRKMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             HHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             HHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            34443 56778999999999999999999999886

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.31  E-value=0.0031  Score=47.00  Aligned_cols=26  Identities=35%  Similarity=0.475  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +...|+|.|.+|||||+.++.+.+.+
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            45789999999999999999998765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.29  E-value=0.0026  Score=48.86  Aligned_cols=28  Identities=25%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.|.|.+|||||+.++.+...+.
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3567899999999999999999999754

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.26  E-value=0.0021  Score=50.34  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|+||||||+..+.+...+
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            467789999999999999999999865

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.24  E-value=0.0027  Score=46.73  Aligned_cols=24  Identities=21%  Similarity=0.170  Sum_probs=21.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|.+|||||+.++.+.+.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988754

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.24  E-value=0.0026  Score=50.26  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.++|+|+||||||+..+.++..+.
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999998764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.23  E-value=0.0049  Score=47.63  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .........|++.|.+|||||+.++.+.+.+.
T Consensus        19 ~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           19 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34456778999999999999999999998775

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.23  E-value=0.0031  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.487  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|+|.|.+|||||+.++.+.+.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999988765

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.0027  Score=48.63  Aligned_cols=26  Identities=31%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+|+|.+|||||+.++.+.+.+-
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg   43 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACG   43 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            44799999999999999999988764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.21  E-value=0.0033  Score=47.27  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=23.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|++.|.+|||||+.++.+.+.+-
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~   30 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLR   30 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456799999999999999999988754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.19  E-value=0.0051  Score=46.88  Aligned_cols=25  Identities=24%  Similarity=0.328  Sum_probs=23.6

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|+|.|++|+|||+.++.+.+.+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            8899999999999999999999876

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.16  E-value=0.0034  Score=47.07  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.|+++|.+|||||+.++.+.+.+-
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~   36 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSG   36 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999987654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.16  E-value=0.004  Score=46.71  Aligned_cols=27  Identities=22%  Similarity=0.403  Sum_probs=24.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|++.|.+|||||+.++.+.+++.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            567899999999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.14  E-value=0.0038  Score=46.84  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=25.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..|.+...+.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            6788999999999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.12  E-value=0.0037  Score=46.27  Aligned_cols=27  Identities=33%  Similarity=0.341  Sum_probs=25.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++|.|++|+|||+.++.+...+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999999886

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.11  E-value=0.0031  Score=46.73  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+|.|.+|||||+.++.+...+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999988654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.11  E-value=0.0032  Score=49.17  Aligned_cols=27  Identities=15%  Similarity=0.345  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.|+|+|.||+|||+.++.+++.+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            567899999999999999999998754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.04  E-value=0.0041  Score=47.41  Aligned_cols=24  Identities=38%  Similarity=0.553  Sum_probs=21.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|.|++|||||+..+.+...+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999874

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.04  E-value=0.0068  Score=45.49  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.1

Q ss_pred             CCCeEEEecCCCCCchhHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAAS  115 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k  115 (186)
                      .+.+.+.+.|++|||||+.++
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~   27 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAK   27 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHH
Confidence            356789999999999999999

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.03  E-value=0.0041  Score=46.93  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=24.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|++.|.+|||||+.++.+.+.+.
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            556899999999999999999998876

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.03  E-value=0.0045  Score=46.42  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=22.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+++|.+|||||+.++.+.+.+-
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999988654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.03  E-value=0.0042  Score=49.19  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=24.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|.+|||||+.++.+.+.+.
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            468999999999999999999997664

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.00  E-value=0.0021  Score=48.96  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|.|.|+||||||+.++.+++++.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            5788999999999999999999987

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.97  E-value=0.0094  Score=44.93  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=26.5

Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.......++|.|++|+|||+.++.+.+.+.
T Consensus        30 ~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~   63 (226)
T 2chg_A           30 KGYVERKNIPHLLFSGPPGTGKTATAIALARDLF   63 (226)
T ss_dssp             HHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            3344444555699999999999999999998764

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.97  E-value=0.0057  Score=54.91  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.+.+.|+|.|.||||||+.++.+.+.+.
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~  394 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLM  394 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence            34678999999999999999999999886

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.94  E-value=0.0052  Score=50.60  Aligned_cols=29  Identities=24%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++..|.|.|.||||||+.++.+.+.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35677899999999999999999999887

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.93  E-value=0.013  Score=44.62  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=24.9

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+..++|.|++|+|||+.++.+.+.+.
T Consensus        42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           42 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             TCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34456899999999999999999998775

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.93  E-value=0.0055  Score=50.97  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=26.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+.|.|.|.||||||+.++.|...+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            46778999999999999999999999887

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.92  E-value=0.011  Score=48.46  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=23.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+..|+++|.||||||+.++.+.+.+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.92  E-value=0.0051  Score=47.29  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.++|.+|||||+.++.+...+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999875

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.92  E-value=0.0051  Score=45.60  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +..|++.|.+|||||+.++.+.+
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35799999999999999999988

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.90  E-value=0.0041  Score=46.58  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=22.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|.+|||||+.++.+.+.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999775

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.89  E-value=0.0089  Score=49.29  Aligned_cols=28  Identities=18%  Similarity=0.299  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.|.|.+|||||+.++.+...+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5678999999999999999999998764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=95.88  E-value=0.005  Score=46.48  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +.|++.|.+|||||+.++.+.+.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhcc
Confidence            57899999999999999999873

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=95.86  E-value=0.0054  Score=45.98  Aligned_cols=27  Identities=30%  Similarity=0.393  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|++.|.+|||||+.++.+.+.+-
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l~   29 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQELG   29 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346799999999999999999987553

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=95.85  E-value=0.0057  Score=47.32  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=22.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...|.|.|.+|||||+.++.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999999865

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=95.82  E-value=0.018  Score=45.76  Aligned_cols=28  Identities=25%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+-.|+|+|.+|||||+.++.+.+.+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3466789999999999999999998765

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=95.81  E-value=0.0045  Score=45.26  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+++|.+|||||+.++.+ +.+
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHT
T ss_pred             EEEEECCCCCCHHHHHHHH-HHC
Confidence            5899999999999999999 543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.80  E-value=0.01  Score=51.40  Aligned_cols=36  Identities=25%  Similarity=0.389  Sum_probs=30.0

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.++ ......|+++|++|||||++.+.++.++.
T Consensus       157 ~~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          157 DNFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             HHHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             HHHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence            3566664 46677899999999999999999999886

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=95.80  E-value=0.0061  Score=46.08  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=22.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.|.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999999765

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=95.74  E-value=0.0044  Score=48.55  Aligned_cols=27  Identities=30%  Similarity=0.342  Sum_probs=18.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH-HHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV-YFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il-~~l  121 (186)
                      ...+.|+|.|.+|||||+.++.+. ..+
T Consensus        25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           25 SVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            356789999999999999999999 876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.73  E-value=0.0063  Score=44.96  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+-+.+-
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988654

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.73  E-value=0.005  Score=48.08  Aligned_cols=27  Identities=22%  Similarity=0.322  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+...|+|.|.+|||||+.++.+.+.+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            345689999999999999999998754

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.72  E-value=0.0073  Score=50.27  Aligned_cols=36  Identities=17%  Similarity=0.415  Sum_probs=29.7

Q ss_pred             HHHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         86 SAYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        86 ~a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .++..+. .-...+++.|.|+||||||+.++.|+.++
T Consensus       114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4555553 33688999999999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.72  E-value=0.0028  Score=48.56  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=22.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999885

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=95.71  E-value=0.0063  Score=45.40  Aligned_cols=24  Identities=29%  Similarity=0.322  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            599999999999999999988653

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=95.67  E-value=0.0084  Score=47.51  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.|.|.+|||||+.++.+...+-
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG   50 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIMELLG   50 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4667899999999999999999988754

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.66  E-value=0.0073  Score=45.45  Aligned_cols=27  Identities=30%  Similarity=0.400  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|+|.|.+|||||+.++.+.+.+-
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~   34 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYG   34 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999988653

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.65  E-value=0.0084  Score=44.86  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|++.|.+|||||+.++.+.+.+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999988764

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.65  E-value=0.0078  Score=44.30  Aligned_cols=24  Identities=25%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.64  E-value=0.007  Score=45.38  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+.+.+-
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999988654

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.63  E-value=0.014  Score=52.18  Aligned_cols=48  Identities=17%  Similarity=0.288  Sum_probs=33.7

Q ss_pred             CCCCchHHH---hHHHHHHHHH--hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         74 FQLPPHIFA---IAGSAYRWLR--DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        74 ~~~~PHi~~---~a~~a~~~~~--~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+|+-|.   ++. ..+...  ..+....|+++|.+|||||+.++.+.+.|.
T Consensus       345 g~~~p~~~~r~eV~~-~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          345 GRKLPEWFTRPEVAE-ILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             TCCCCTTTSCHHHHH-HHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCccccchhHHH-HHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            345667665   443 223322  334567899999999999999999998775

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.62  E-value=0.014  Score=47.87  Aligned_cols=35  Identities=17%  Similarity=0.077  Sum_probs=27.7

Q ss_pred             HHHHHhhC--CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRS--EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~--~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+....  ....++|.|++|+|||+.++.+.+.+.
T Consensus        26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            34444432  457899999999999999999999886

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=95.61  E-value=0.0093  Score=45.32  Aligned_cols=26  Identities=31%  Similarity=0.471  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|++.|.+|||||+.++.+.+.+.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            46799999999999999999999775

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.59  E-value=0.012  Score=49.80  Aligned_cols=34  Identities=18%  Similarity=0.488  Sum_probs=27.7

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+. ......|+++|.+|||||++.+.++.++.
T Consensus       115 l~~l~-~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          115 FKRVS-DVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             HHHHH-HCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             HHHHH-hCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            44443 34555899999999999999999999887

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=95.59  E-value=0.012  Score=48.75  Aligned_cols=31  Identities=19%  Similarity=0.308  Sum_probs=26.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      +.+.|.+.|++|||||++++.+..++. ...+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~g  129 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGT  129 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHH-HTTC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH-HcCC
Confidence            567899999999999999999999987 4433

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.57  E-value=0.0057  Score=45.62  Aligned_cols=26  Identities=27%  Similarity=0.348  Sum_probs=18.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|++.|.+|||||+.++.+.+.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45799999999999999999987654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=95.57  E-value=0.011  Score=49.48  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+++.|.+.|++|||||++++.+..++. ...+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~-~~~g  158 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK-NHGF  158 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH-HTTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCC
Confidence            5678999999999999999999999887 4433

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.55  E-value=0.011  Score=48.94  Aligned_cols=27  Identities=22%  Similarity=0.433  Sum_probs=25.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|.+.|.+|||||++++.+..++.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~  127 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ  127 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            567999999999999999999999887

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.54  E-value=0.0075  Score=47.98  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.+...+.
T Consensus        29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   56 (235)
T 3tif_A           29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (235)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3678899999999999999999888665

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.53  E-value=0.0094  Score=50.69  Aligned_cols=29  Identities=28%  Similarity=0.526  Sum_probs=26.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -...+.|++.|.+|||||++.+.++.++.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45678899999999999999999999887

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.53  E-value=0.0072  Score=48.24  Aligned_cols=28  Identities=25%  Similarity=0.376  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|++.|.+|||||+.++.+.+.+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3456899999999999999999988763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=95.51  E-value=0.01  Score=45.22  Aligned_cols=28  Identities=18%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+|.|.+|||||+.++.+.+.+-
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4556899999999999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.51  E-value=0.0096  Score=45.38  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=23.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -..|+++|.||||||+.++.+++.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35789999999999999999999876

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=95.49  E-value=0.0089  Score=47.78  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .....|.|.|.+|||||+.++.+.+.|
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence            345689999999999999999999654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.48  E-value=0.01  Score=44.35  Aligned_cols=25  Identities=28%  Similarity=0.395  Sum_probs=22.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...|+|+|.+|||||+.++.+.+.+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998765

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.48  E-value=0.0091  Score=45.56  Aligned_cols=27  Identities=22%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..|+|+|-+|||||+.++.+.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            456799999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.47  E-value=0.0088  Score=44.81  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+++|.+|||||+.++.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999977

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=95.46  E-value=0.006  Score=46.78  Aligned_cols=26  Identities=31%  Similarity=0.302  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+.|.++|.+|||||+.++.+.+.+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            56789999999999999999998865

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.46  E-value=0.0098  Score=45.41  Aligned_cols=28  Identities=18%  Similarity=0.324  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++..|+|+|-+|||||+.++.+.+.+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.44  E-value=0.0093  Score=45.13  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=22.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +...|.|+|.+|||||+.++.+.+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            4567999999999999999998774

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=95.42  E-value=0.011  Score=45.10  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=22.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +...|+|+|.+|||||+.++.+.+.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.39  E-value=0.018  Score=46.23  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..++|.|++|+|||+.++.+.+.+.
T Consensus        48 ~~~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           48 VTPKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4577899999999999999999998764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=95.39  E-value=0.0087  Score=46.06  Aligned_cols=28  Identities=36%  Similarity=0.405  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+.++.+...+.
T Consensus        23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999988654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.39  E-value=0.0095  Score=44.92  Aligned_cols=26  Identities=27%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|++.|.+|||||+.++.+.+.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999988764

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=95.38  E-value=0.0095  Score=45.82  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+.+.+-
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYE   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999977553

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.34  E-value=0.023  Score=47.23  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.........+..++|.|++|+|||+.++.+.+.+.
T Consensus        34 ~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~   70 (384)
T 2qby_B           34 IAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIE   70 (384)
T ss_dssp             HHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3444555566778999999999999999999999874

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=95.33  E-value=0.0052  Score=52.01  Aligned_cols=28  Identities=36%  Similarity=0.544  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.|+++|++|||||+..+.++.++.
T Consensus       173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          173 QLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4667899999999999999999999766

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=95.31  E-value=0.01  Score=45.67  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|.+.|.+|+|||+..+.+..++.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            4689999999999999999999875

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.30  E-value=0.0095  Score=43.38  Aligned_cols=27  Identities=22%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+..|+|.||+|+|||..++.+-+..
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            456679999999999999999887764

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.29  E-value=0.013  Score=45.82  Aligned_cols=37  Identities=22%  Similarity=0.151  Sum_probs=28.9

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .++..+   ...+.+.+.|++|||||+..+.+... . ..+|
T Consensus        14 ~~l~~i---~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-p~~G   50 (208)
T 3b85_A           14 HYVDAI---DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-LQSK   50 (208)
T ss_dssp             HHHHHH---HHCSEEEEECCTTSSTTHHHHHHHHH-H-HHTT
T ss_pred             HHHHhc---cCCCEEEEECCCCCCHHHHHHHHhcC-C-CcCC
Confidence            344554   45778999999999999999999988 5 4444

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.29  E-value=0.027  Score=46.67  Aligned_cols=35  Identities=14%  Similarity=0.110  Sum_probs=27.9

Q ss_pred             HHHHHhhCCCe--EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQ--CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q--~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .........+.  .++|.|++|+|||+.++.+.+.+.
T Consensus        33 l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           33 LGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             HHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            33344445666  899999999999999999998875

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.29  E-value=0.021  Score=45.64  Aligned_cols=29  Identities=24%  Similarity=0.266  Sum_probs=24.8

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......++|.|++|+|||+.++.+.+.+-
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            45667899999999999999999988643

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.27  E-value=0.01  Score=44.95  Aligned_cols=26  Identities=27%  Similarity=0.307  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ++..|+|.|.+|||||+.++.+.+.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35679999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.27  E-value=0.032  Score=47.65  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=36.6

Q ss_pred             CCchHHHhHHHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         76 LPPHIFAIAGSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        76 ~~PHi~~~a~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-|.+......++..+.. -...+.|++.|.+|+|||+.++.+...+.
T Consensus       147 l~~~~~~~~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          147 LLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             TSTTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            345666666677777643 46778999999999999999999998654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=95.26  E-value=0.013  Score=44.32  Aligned_cols=25  Identities=32%  Similarity=0.531  Sum_probs=22.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +...|+++|.+|||||+.++.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3467999999999999999999887

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.25  E-value=0.011  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.414  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|+|.|.+|||||+.++.+.+.+-
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            67899999999999999999988543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.23  E-value=0.012  Score=45.46  Aligned_cols=24  Identities=17%  Similarity=0.457  Sum_probs=21.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ....|+|+|+||+|||+.+..+++
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            567899999999999999988887

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.22  E-value=0.014  Score=45.16  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|+|.|.+|||||+.++.+.+.+-
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            445799999999999999999988754

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.22  E-value=0.014  Score=44.45  Aligned_cols=25  Identities=28%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|.++|.+|||||+.+..+++.|.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4789999999999999999999886

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=95.21  E-value=0.019  Score=48.01  Aligned_cols=24  Identities=17%  Similarity=0.364  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|.|.||||||+.++.+...+.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999988775

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.19  E-value=0.016  Score=51.58  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=33.4

Q ss_pred             CCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         76 LPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        76 ~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|+|..+..++|..  ..++...|+|+|-||||||+.++.+-+.|.
T Consensus       376 ~rpeV~~vLr~~~~~--~~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          376 SYPEVVKILRESNPP--RPKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             SCHHHHHHHHHHSCC--GGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cChhhHHHHHHhccc--ccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            446666555555422  124557899999999999999999999987

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.18  E-value=0.01  Score=46.02  Aligned_cols=27  Identities=19%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|+|.|.+|||||+.++.+.+.+-
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345699999999999999999988764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.17  E-value=0.018  Score=48.86  Aligned_cols=48  Identities=15%  Similarity=0.160  Sum_probs=35.2

Q ss_pred             hHHHhHHHHHHHHHhh-----------CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         79 HIFAIAGSAYRWLRDR-----------SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~-----------~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+..+..+....++..           .+++.|.+.|.+|||||++++.+..++. ...+
T Consensus       128 ~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~~~G  186 (359)
T 2og2_A          128 EIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-NEGT  186 (359)
T ss_dssp             HHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-HTTC
T ss_pred             HHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-ccCC
Confidence            4555555555555432           2467899999999999999999999987 4333

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.16  E-value=0.016  Score=44.45  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+++.|++|+|||+.++.+...+.
T Consensus        21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~   48 (235)
T 2w0m_A           21 PQGFFIALTGEPGTGKTIFSLHFIAKGL   48 (235)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3667899999999999999999997776

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=95.16  E-value=0.01  Score=45.70  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+|+|.+|||||+.++.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            38999999999999999997754

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.15  E-value=0.014  Score=44.32  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|+|.+|||||+.++.+.+.+-
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            689999999999999999988653

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.14  E-value=0.016  Score=45.92  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=23.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|++|+|||+.++.+.+.+.
T Consensus        44 ~~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            456799999999999999999988653

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.10  E-value=0.0075  Score=48.14  Aligned_cols=28  Identities=29%  Similarity=0.454  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..+.+...+.
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (243)
T 1mv5_A           26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (243)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999988765

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.09  E-value=0.0072  Score=47.49  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .+...|.|.|.+|||||+.++.+..+
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhc
Confidence            35678999999999999999988775

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=95.08  E-value=0.025  Score=47.26  Aligned_cols=37  Identities=14%  Similarity=-0.025  Sum_probs=31.9

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+......++.+|+|+|.+|+|||.+++.+++-+.
T Consensus        34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            3445556778999999999999999999999999886

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.08  E-value=0.017  Score=45.43  Aligned_cols=28  Identities=25%  Similarity=0.239  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+|.|++|+|||+.++.+.+.+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3566899999999999999999988654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.07  E-value=0.0068  Score=49.23  Aligned_cols=27  Identities=15%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~   62 (266)
T 4g1u_C           36 SGEMVAIIGPNGAGKSTLLRLLTGYLS   62 (266)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            678899999999999999999988765

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.05  E-value=0.013  Score=46.59  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (237)
T 2cbz_A           29 PEGALVAVVGQVGCGKSSLLSALLAEMD   56 (237)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678999999999999999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.04  E-value=0.013  Score=46.85  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.+.+.+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCC
Confidence            589999999999999999988654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.01  E-value=0.018  Score=46.18  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+++|.+|||||+.++.+.+.|.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999998764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.98  E-value=0.014  Score=46.86  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   60 (247)
T 2ff7_A           34 QGEVIGIVGRSGSGKSTLTKLIQRFYI   60 (247)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            678899999999999999999988765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.95  E-value=0.015  Score=46.61  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +.+.+.|.|++|||||+..|.+...
T Consensus        28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           28 KGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            6788999999999999999999986

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.91  E-value=0.015  Score=47.03  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           30 RAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678899999999999999999887655

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.91  E-value=0.015  Score=46.94  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   71 (260)
T 2ghi_A           44 PSGTTCALVGHTGSGKSTIAKLLYRFYD   71 (260)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4778999999999999999999988754

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.90  E-value=0.016  Score=46.97  Aligned_cols=27  Identities=19%  Similarity=0.240  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.+.+.|.|++|||||+..|.+...+
T Consensus        44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~   70 (267)
T 2zu0_C           44 HPGEVHAIMGPNGSGKSTLSATLAGRE   70 (267)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            367889999999999999999999874

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=94.89  E-value=0.013  Score=46.23  Aligned_cols=27  Identities=26%  Similarity=0.384  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A           29 KGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            667899999999999999998887654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.87  E-value=0.025  Score=49.21  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=30.6

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.++...+..+++|.|++|+|||+.++.+.+.+.
T Consensus        39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3455666667778999999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.85  E-value=0.015  Score=47.55  Aligned_cols=28  Identities=14%  Similarity=0.208  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~   59 (275)
T 3gfo_A           32 KRGEVTAILGGNGVGKSTLFQNFNGILK   59 (275)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3678899999999999999999988765

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=94.85  E-value=0.025  Score=50.23  Aligned_cols=44  Identities=14%  Similarity=0.235  Sum_probs=35.0

Q ss_pred             hHHHhHHHHHHHHHhh---------CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         79 HIFAIAGSAYRWLRDR---------SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~---------~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..+....+..++..         ...+.|.|.|.+|||||++++.|..++.
T Consensus       266 ~~~~~l~~~l~~~l~~~~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          266 ALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             GHHHHHHHHHHHHHHTTBCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            4666666666666542         3577999999999999999999999887

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.84  E-value=0.034  Score=44.94  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|+|.|++|+|||+.++.+.+.+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4555799999999999999999999886

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.84  E-value=0.0069  Score=50.38  Aligned_cols=28  Identities=25%  Similarity=0.444  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.+..++.
T Consensus        78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           78 MPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             CTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            4778999999999999999999998765

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.84  E-value=0.016  Score=47.00  Aligned_cols=28  Identities=29%  Similarity=0.422  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           48 REGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            3778899999999999999999888654

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.83  E-value=0.016  Score=46.27  Aligned_cols=27  Identities=15%  Similarity=0.377  Sum_probs=23.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+ +.+.+.|++|||||+..|.+...+.
T Consensus        23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           23 GR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35 8899999999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=94.83  E-value=0.015  Score=44.90  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+|.|.+|||||+.++.+.+.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=94.81  E-value=0.023  Score=44.85  Aligned_cols=27  Identities=30%  Similarity=0.330  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+|.|.+|||||+.++.+.+.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            557899999999999999999999886

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.81  E-value=0.016  Score=46.64  Aligned_cols=27  Identities=22%  Similarity=0.517  Sum_probs=24.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~   58 (257)
T 1g6h_A           32 KGDVTLIIGPNGSGKSTLINVITGFLK   58 (257)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            678899999999999999999988765

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.78  E-value=0.036  Score=45.85  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=27.0

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .......++-..++|.|++|+|||+.++.+.+.+.
T Consensus        37 L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           37 VRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             HHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            33444444434499999999999999999999875

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=94.78  E-value=0.018  Score=45.53  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..++|.|++|+|||+.++.+...+
T Consensus        49 ~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           49 PKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            4559999999999999999998864

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.76  E-value=0.043  Score=44.32  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+....+...++|.|++|+|||+.++.+.+.+.
T Consensus        37 l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           37 LKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             HHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            34455555655699999999999999999998864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.76  E-value=0.017  Score=46.90  Aligned_cols=28  Identities=21%  Similarity=0.383  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.|...+.
T Consensus        43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~   70 (271)
T 2ixe_A           43 YPGKVTALVGPNGSGKSTVAALLQNLYQ   70 (271)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4778899999999999999999988765

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=94.76  E-value=0.024  Score=45.76  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...++|.|++|+|||+.++.+.+.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            35899999999999999999999875

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.75  E-value=0.019  Score=51.62  Aligned_cols=29  Identities=21%  Similarity=0.264  Sum_probs=25.0

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++...|+|+|.+|||||+.++.+-+.|.
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~  421 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLN  421 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence            34556899999999999999999988876

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=94.73  E-value=0.018  Score=44.89  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg   25 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYS   25 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988653

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.71  E-value=0.018  Score=46.56  Aligned_cols=28  Identities=36%  Similarity=0.748  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~   58 (266)
T 2yz2_A           31 NEGECLLVAGNTGSGKSTLLQIVAGLIE   58 (266)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3678899999999999999999887654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.65  E-value=0.019  Score=46.33  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~   66 (256)
T 1vpl_A           39 EEGEIFGLIGPNGAGKTTTLRIISTLIK   66 (256)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3678899999999999999999887654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=94.65  E-value=0.024  Score=43.68  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +-.|+|+|.+|||||+.++.+-+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.64  E-value=0.019  Score=45.42  Aligned_cols=28  Identities=29%  Similarity=0.442  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           32 ERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3678899999999999999999988754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=94.64  E-value=0.022  Score=45.86  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|++|+|||+.++.+.+.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988654

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.64  E-value=0.04  Score=47.73  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhCC-CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         85 GSAYRWLRDRSE-DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        85 ~~a~~~~~~~~~-~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+...+..... ...++|.|++|+|||+.++.+.+.+.
T Consensus       117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            334444444332 67899999999999999999999886

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=94.64  E-value=0.015  Score=48.01  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+.++|.|++|+|||+.++.+.+.+.
T Consensus        42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           42 EEKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             TCCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999998775

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=94.63  E-value=0.016  Score=44.09  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=19.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|.|+|.+|||||+.++.+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            589999999999999999887

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.63  E-value=0.016  Score=45.56  Aligned_cols=27  Identities=19%  Similarity=0.385  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           34 KGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            667899999999999999999887654

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=94.63  E-value=0.045  Score=45.33  Aligned_cols=25  Identities=24%  Similarity=0.517  Sum_probs=23.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|++|+|||..++.+.+.+.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            6999999999999999999999876

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.62  E-value=0.012  Score=48.66  Aligned_cols=29  Identities=24%  Similarity=0.387  Sum_probs=25.9

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....+++|.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           41 GEKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             SCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            45678899999999999999999999874

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.59  E-value=0.02  Score=45.62  Aligned_cols=27  Identities=26%  Similarity=0.454  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   57 (240)
T 1ji0_A           31 RGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            667899999999999999999888654

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=94.58  E-value=0.027  Score=44.07  Aligned_cols=27  Identities=19%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+|.|..|||||+.++.+.+.+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999988764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=94.57  E-value=0.035  Score=44.05  Aligned_cols=27  Identities=33%  Similarity=0.552  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.||+|+|||+.++.+.+.+.
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            456799999999999999999987654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.56  E-value=0.028  Score=46.59  Aligned_cols=43  Identities=16%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             HHHhHHHHHHHHHhh--------CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         80 IFAIAGSAYRWLRDR--------SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        80 i~~~a~~a~~~~~~~--------~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+..+....++..        ..++.|.+.|.+|+|||++++.+..++.
T Consensus        79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~  129 (306)
T 1vma_A           79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV  129 (306)
T ss_dssp             HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH
Confidence            555555665555532        3457899999999999999999999987

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.56  E-value=0.019  Score=46.69  Aligned_cols=24  Identities=29%  Similarity=0.387  Sum_probs=21.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.|++|||||+..+.+.....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999999999776

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=94.54  E-value=0.021  Score=48.92  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|...+.
T Consensus        27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A           27 HEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            3668899999999999999999988765

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.54  E-value=0.017  Score=47.79  Aligned_cols=25  Identities=20%  Similarity=0.214  Sum_probs=22.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      -+.++|+|.+|||||+..+.++...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3578999999999999999999864

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=94.51  E-value=0.019  Score=43.76  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=19.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|.|.|.+|||||+.++.+.+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999999876

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=94.50  E-value=0.026  Score=45.17  Aligned_cols=28  Identities=29%  Similarity=0.334  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..++|.|++|+|||+.++.+.+.+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4677899999999999999999987654

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=94.48  E-value=0.026  Score=44.79  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|.|+|.+|||||+.++.+.+.|.
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            445799999999999999999988654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=94.45  E-value=0.011  Score=52.41  Aligned_cols=27  Identities=37%  Similarity=0.570  Sum_probs=24.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.|+++|++|||||++.+.++.++.
T Consensus       259 ~g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          259 HKFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            456699999999999999999998875

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.44  E-value=0.019  Score=47.02  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=20.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-.|.|+|.||||||+.++.+.+.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            345799999999999999999988664

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=94.44  E-value=0.01  Score=43.13  Aligned_cols=26  Identities=19%  Similarity=0.195  Sum_probs=21.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+..|+|.||+|+|||..++.+-+.
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~   50 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKN   50 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHh
Confidence            35567999999999999998877653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.44  E-value=0.022  Score=46.94  Aligned_cols=24  Identities=21%  Similarity=0.373  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++|.|++|+|||+.++.+.+.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHc
Confidence            399999999999999999999654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.41  E-value=0.034  Score=45.56  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=26.9

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ............++|.|++|+|||+.++.+.+.+.
T Consensus        49 l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           49 LKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34444444434599999999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=94.38  E-value=0.027  Score=45.96  Aligned_cols=28  Identities=21%  Similarity=0.313  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+|.|++|+|||+.++.+.+.+.
T Consensus        47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           47 TPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567899999999999999999887643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=94.38  E-value=0.061  Score=44.57  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .....++|.|++|+|||+.++.+...+
T Consensus        49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           49 EVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            344789999999999999999999987

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.38  E-value=0.023  Score=45.64  Aligned_cols=27  Identities=19%  Similarity=0.375  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..+.+...+.
T Consensus        30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           30 KGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             TTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            678899999999999999999888654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.36  E-value=0.023  Score=46.42  Aligned_cols=27  Identities=22%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|++|||||+..|.+...+.
T Consensus        46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~   72 (279)
T 2ihy_A           46 KGDKWILYGLNGAGKTTLLNILNAYEP   72 (279)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            678899999999999999999988765

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.35  E-value=0.064  Score=44.23  Aligned_cols=29  Identities=24%  Similarity=0.327  Sum_probs=25.2

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+..++|.|++|+|||+.++.+.+.+.
T Consensus        35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           35 GRIHHAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             TCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34467899999999999999999998875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.33  E-value=0.024  Score=45.56  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           24 RAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3677899999999999999999988765

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.31  E-value=0.027  Score=45.51  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=20.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..|+++|.+|||||+.++.+.+.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            56999999999999999999874

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.31  E-value=0.029  Score=45.38  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=26.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -...+.++|.|++|+|||+.++.+...+.
T Consensus        32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           32 ARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             BCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35778999999999999999999999887

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.30  E-value=0.022  Score=47.88  Aligned_cols=26  Identities=15%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.|.|++|||||+.++.+..++.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            67899999999999999999999876

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.29  E-value=0.032  Score=44.92  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=24.9

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+....++|.|++|+|||+.++.+.+.+.
T Consensus        33 l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           33 VERKNIPHLLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             TTTTCCCCEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             HhCCCCCeEEEECcCCcCHHHHHHHHHHHhc
Confidence            3344444599999999999999999998863

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=94.28  E-value=0.027  Score=45.25  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|+|.|++|+|||+.++.+...+
T Consensus        73 ~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           73 PKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECCCcChHHHHHHHHHHHc
Confidence            4459999999999999999998864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=94.23  E-value=0.032  Score=44.52  Aligned_cols=27  Identities=19%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+-.|.|.|.+|||||+.++.+.+.+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345799999999999999999988764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=94.20  E-value=0.025  Score=48.13  Aligned_cols=28  Identities=25%  Similarity=0.383  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   55 (359)
T 3fvq_A           28 DPGEILFIIGASGCGKTTLLRCLAGFEQ   55 (359)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            3668899999999999999999988765

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=94.19  E-value=0.025  Score=43.80  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|+|.|.+|||||+.++.+.+.+-
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~   30 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYG   30 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4699999999999999999988653

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=94.17  E-value=0.063  Score=41.16  Aligned_cols=34  Identities=24%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+....+...|++.|.+|+|||+....++..+.
T Consensus        30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4444556677899999999999999999988754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=94.17  E-value=0.031  Score=42.59  Aligned_cols=25  Identities=28%  Similarity=0.145  Sum_probs=22.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ...+.+++.|++|+|||+.++.+..
T Consensus        18 ~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           18 APGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4677899999999999999999887

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.16  E-value=0.039  Score=43.24  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+...|.|.|.+|||||+.++.+.+.|
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456689999999999999999988754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.13  E-value=0.012  Score=49.18  Aligned_cols=28  Identities=36%  Similarity=0.551  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|.+|||||+..+.++.++.
T Consensus       169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3456899999999999999999998765

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=94.10  E-value=0.11  Score=42.36  Aligned_cols=56  Identities=18%  Similarity=0.208  Sum_probs=35.8

Q ss_pred             HHHHhcCCCCCCCchHHHhHHHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         65 ARAYRTRGPFQLPPHIFAIAGSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        65 ~~~y~~~~~~~~~PHi~~~a~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+.....++.-|--.  .+..+.... .+.+..+++.|++|+|||+.++.+.+.+-
T Consensus        17 ~~k~rP~~~~~ivg~~~~--~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           17 EQKYRPSTIDECILPAFD--KETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             HHHSCCCSTTTSCCCHHH--HHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             HHhhCCCCHHHHhCcHHH--HHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            456665555554433221  133334433 44556788999999999999999988653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.09  E-value=0.022  Score=45.25  Aligned_cols=27  Identities=26%  Similarity=0.282  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|++|+|||+.++.+.+.+.
T Consensus        43 ~~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           43 IPKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            355699999999999999999988754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=94.09  E-value=0.03  Score=47.69  Aligned_cols=28  Identities=29%  Similarity=0.277  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.+...+.
T Consensus        52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~   79 (366)
T 3tui_C           52 PAGQIYGVIGASGAGKSTLIRCVNLLER   79 (366)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence            3678899999999999999999888665

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.05  E-value=0.056  Score=43.52  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=26.6

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ........+...++|.|++|+|||+.++.+.+.+.
T Consensus        33 l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           33 LQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             HHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhc
Confidence            33444444444499999999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=94.04  E-value=0.063  Score=45.63  Aligned_cols=41  Identities=27%  Similarity=0.490  Sum_probs=29.9

Q ss_pred             HhHHHHHHHHH---hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLR---DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~---~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.+...+.   ..++-..|+|.|.+|+|||+.++.+.+.+.
T Consensus         6 ~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A            6 KLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             HHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            45566655553   233445699999999999999998888665

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.03  E-value=0.032  Score=47.38  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (359)
T 2yyz_A           27 KDGEFVALLGPSGCGKTTTLLMLAGIYK   54 (359)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence            3678899999999999999999988765

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=93.98  E-value=0.033  Score=47.35  Aligned_cols=28  Identities=21%  Similarity=0.332  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A           27 KDGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            3678899999999999999999988765

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=93.97  E-value=0.037  Score=45.54  Aligned_cols=27  Identities=22%  Similarity=0.416  Sum_probs=25.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|++.|.+|+|||++++.+..++.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999999887

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=93.97  E-value=0.025  Score=48.65  Aligned_cols=28  Identities=14%  Similarity=0.245  Sum_probs=23.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+++|.+|||||+.++.+.+.+-
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~~  283 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSAG  283 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3567899999999999999999887553

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=93.90  E-value=0.034  Score=48.32  Aligned_cols=38  Identities=21%  Similarity=0.147  Sum_probs=33.4

Q ss_pred             HHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         85 GSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        85 ~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+...++.-.+.|.+.|.|.||+|||+..+.|..++.
T Consensus       145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~  182 (438)
T 2dpy_A          145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR  182 (438)
T ss_dssp             CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            45777887778999999999999999999999999865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=93.89  E-value=0.034  Score=47.17  Aligned_cols=28  Identities=29%  Similarity=0.364  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|...+.
T Consensus        39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   66 (355)
T 1z47_A           39 REGEMVGLLGPSGSGKTTILRLIAGLER   66 (355)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3678899999999999999999988765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.89  E-value=0.066  Score=43.86  Aligned_cols=28  Identities=32%  Similarity=0.478  Sum_probs=23.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|+|.|++|+|||+.++.+.+.+.
T Consensus        53 ~~~~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           53 ECLDHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             SCCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4556799999999999999999977643

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=93.89  E-value=0.057  Score=43.80  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..++|.|++|+|||+.++.+.+.+.
T Consensus        36 ~~~~~vll~G~~GtGKT~la~~i~~~~~   63 (324)
T 1hqc_A           36 EPLEHLLLFGPPGLGKTTLAHVIAHELG   63 (324)
T ss_dssp             SCCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            3557899999999999999999988654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=93.89  E-value=0.036  Score=42.95  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=23.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.+.++|.|++|+|||+.++.+....
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~   48 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTC   48 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            367889999999999999999988753

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=93.87  E-value=0.048  Score=42.70  Aligned_cols=27  Identities=15%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-|+|.|.+|||||+.++.+.++|.
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356799999999999999999999986

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=93.85  E-value=0.037  Score=43.13  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|..||||++.++.+.+.+-
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            388999999999999999998764

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=93.85  E-value=0.039  Score=46.16  Aligned_cols=29  Identities=28%  Similarity=0.313  Sum_probs=24.7

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+..|+|+|.+|||||+.+..+.+.+.
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCC
Confidence            34567899999999999999999998764

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.84  E-value=0.067  Score=40.85  Aligned_cols=32  Identities=25%  Similarity=0.227  Sum_probs=25.6

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +....+.-.|++.|.+|+|||+.+..++..+.
T Consensus        24 ~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           24 ALRESGTVAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             HHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             hhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33344566899999999999999999988753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=93.84  E-value=0.033  Score=45.12  Aligned_cols=25  Identities=28%  Similarity=0.465  Sum_probs=22.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.+.+.|++|||||+..|.+...+
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999988754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.82  E-value=0.049  Score=42.93  Aligned_cols=28  Identities=29%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|++.|..||||++.++.+.+.+-
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4556788999999999999999988764

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=93.82  E-value=0.037  Score=47.23  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   62 (372)
T 1v43_A           35 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   62 (372)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3668899999999999999999988765

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=93.82  E-value=0.075  Score=44.38  Aligned_cols=28  Identities=32%  Similarity=0.375  Sum_probs=25.1

Q ss_pred             CCCeEEEe--cCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIV--SGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~Iil--sGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+++  .|++|.|||+.++.+.+.+.
T Consensus        48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             BCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            57789999  99999999999999998765

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=93.80  E-value=0.033  Score=46.93  Aligned_cols=39  Identities=23%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         84 AGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        84 a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|...++.-.+.|.+.|.|.+|+|||+..+.|...+.
T Consensus        58 g~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           58 GVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             SCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             CCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            346777887778999999999999999999999999765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=93.79  E-value=0.032  Score=45.91  Aligned_cols=28  Identities=29%  Similarity=0.442  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~   89 (290)
T 2bbs_A           62 ERGQLLAVAGSTGAGKTSLLMMIMGELE   89 (290)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3678899999999999999999988764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.79  E-value=0.052  Score=42.99  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=25.6

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+...|++.|.+|||||+.++.+.++|.
T Consensus        18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           18 GPGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            34667899999999999999999999987

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=93.78  E-value=0.035  Score=45.49  Aligned_cols=26  Identities=23%  Similarity=0.445  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+|.|++|+|||+.++.+.+.+.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            34599999999999999999998764

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=93.77  E-value=0.051  Score=45.24  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|.+.|.+|+|||+++..+..++.
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            466899999999999999999999988

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=93.76  E-value=0.035  Score=43.60  Aligned_cols=26  Identities=12%  Similarity=0.222  Sum_probs=23.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|++.|..|||||+.++.+.++|.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999999873

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=93.76  E-value=0.034  Score=42.68  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|+|+|.+|||||+.++.+.+.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3569999999999999999988854

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=93.73  E-value=0.038  Score=41.17  Aligned_cols=25  Identities=20%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+|.|++|||||+..+.|.-.|.
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHc
Confidence            3789999999999999988776554

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=93.73  E-value=0.046  Score=42.12  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=23.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ....-.|.++|-+|||||+.++.+.+.+
T Consensus         9 ~~~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A            9 HHHHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3455679999999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.72  E-value=0.036  Score=43.57  Aligned_cols=27  Identities=26%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+|+|.||+|||+.+..+.+...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            567899999999999999998888654

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=93.72  E-value=0.077  Score=41.47  Aligned_cols=36  Identities=17%  Similarity=0.402  Sum_probs=24.7

Q ss_pred             HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHH
Q psy18111         80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      ++.+-+++...+.   +++.+++.|++|||||+....++
T Consensus        62 ~~~~q~~~i~~i~---~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           62 VKKFESEILEAIS---QNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             GGGGHHHHHHHHH---HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh---cCCEEEEEeCCCCCcHHhHHHHH
Confidence            3444555555543   34689999999999998665544

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=93.71  E-value=0.038  Score=47.09  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=24.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|+||||||+..|.|..++.
T Consensus        28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (372)
T 1g29_1           28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (372)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence            667899999999999999999988654

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=93.66  E-value=0.11  Score=42.94  Aligned_cols=30  Identities=7%  Similarity=0.224  Sum_probs=26.4

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+-+.+++|.|+.|.|||+.++.+.+.+.
T Consensus        20 ~~~~~~a~L~~G~~G~GKt~~a~~la~~l~   49 (334)
T 1a5t_A           20 AGRGHHALLIQALPGMGDDALIYALSRYLL   49 (334)
T ss_dssp             TTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence            345577899999999999999999999886

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=93.66  E-value=0.031  Score=50.09  Aligned_cols=32  Identities=28%  Similarity=0.545  Sum_probs=27.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      .+.+.+.+.|+||||||+..+.+..++. ..+|
T Consensus       367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~-p~~G  398 (582)
T 3b5x_A          367 PQGKTVALVGRSGSGKSTIANLFTRFYD-VDSG  398 (582)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC-CCCC
Confidence            5778999999999999999999999876 4444

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=93.65  E-value=0.036  Score=47.60  Aligned_cols=28  Identities=29%  Similarity=0.393  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~   72 (390)
T 3gd7_A           45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN   72 (390)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            4678899999999999999999988654

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=93.65  E-value=0.039  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.431  Sum_probs=22.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+.++|.|+||+|||+.+..+++.
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            3679999999999999999998883

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=93.63  E-value=0.03  Score=47.36  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   51 (348)
T 3d31_A           24 ESGEYFVILGPTGAGKTLFLELIAGFHV   51 (348)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence            3668899999999999999999988765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=93.62  E-value=0.1  Score=42.95  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=23.8

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.++|.|++|+|||+.++.+.+.+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999988776

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=93.57  E-value=0.065  Score=44.03  Aligned_cols=33  Identities=30%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             HHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         89 RWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        89 ~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+......+.+.+.|+||+|||+..+.+. .+.
T Consensus       157 ~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~  189 (302)
T 2yv5_A          157 DELVDYLEGFICILAGPSGVGKSSILSRLT-GEE  189 (302)
T ss_dssp             HHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred             HHHHhhccCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence            445555678899999999999999999999 544

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.55  E-value=0.047  Score=44.51  Aligned_cols=28  Identities=18%  Similarity=0.228  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+..+++.|++|+|||..++.+.+.+-
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3556789999999999999999998764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=93.49  E-value=0.14  Score=46.92  Aligned_cols=64  Identities=23%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         57 LNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        57 l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-|.......++.....++.-.- ... +.....+..+....++|.|++|+|||+.++.+.+.+.
T Consensus       169 l~~~~~~l~~~~~~~~~d~~iGr~-~~i-~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~  232 (758)
T 1r6b_X          169 LENFTTNLNQLARVGGIDPLIGRE-KEL-ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV  232 (758)
T ss_dssp             CCSSSCBHHHHHHTTCSCCCCSCH-HHH-HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHhHhHHHHHhcCCCCCccCCH-HHH-HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence            444555555666554433322110 111 1223345556778899999999999999999999874

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.46  E-value=0.05  Score=43.40  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-|++.|.+|||||+.++.+.++|.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999986

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=93.46  E-value=0.043  Score=46.02  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ....|+|.|++|+|||+.++.+.+.+
T Consensus        71 ~~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           71 SKSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=93.45  E-value=0.049  Score=43.20  Aligned_cols=27  Identities=22%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-|+|.|.+|||||+.++.+.++|.
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            566899999999999999999999986

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=93.44  E-value=0.072  Score=44.45  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+..|+|.|++|+|||+.++.+-+.+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            45679999999999999999998865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.42  E-value=0.079  Score=44.27  Aligned_cols=38  Identities=11%  Similarity=0.153  Sum_probs=30.9

Q ss_pred             HHHHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         85 GSAYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        85 ~~a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+...+. ...+.+.+.|.|.+|||||+..+.+..++.
T Consensus        42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~   80 (337)
T 2qm8_A           42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT   80 (337)
T ss_dssp             HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence            44555553 346788999999999999999999999876

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.41  E-value=0.061  Score=44.24  Aligned_cols=27  Identities=26%  Similarity=0.320  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|++|+|||..++.+.+.+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            356799999999999999999988654

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=93.38  E-value=0.052  Score=44.07  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=21.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +...|+|+|.+|||||+.++.+.+
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            455799999999999999998875

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=93.37  E-value=0.037  Score=48.43  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=26.4

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.+.+.+.|.|.+|||||+.+|.+..++.
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence            35788999999999999999999999886

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.32  E-value=0.055  Score=45.31  Aligned_cols=28  Identities=21%  Similarity=0.312  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+|.|++|+|||+.++.+.+.+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4577899999999999999999988653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=93.28  E-value=0.058  Score=41.74  Aligned_cols=27  Identities=26%  Similarity=0.418  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+++.|++|+|||+.+..++..++
T Consensus        22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           22 ERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             TTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            667899999999999999888877665

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=93.25  E-value=0.062  Score=47.67  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=24.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|++.|-+|||||+.++.+.++|-
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~   60 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLN   60 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            456899999999999999999998874

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=93.23  E-value=0.03  Score=47.34  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.|..++.
T Consensus        29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~   56 (353)
T 1oxx_K           29 ENGERFGILGPSGAGKTTFMRIIAGLDV   56 (353)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3668899999999999999999988654

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=93.21  E-value=0.046  Score=46.16  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|+|+|.||||||+.++.+.+.+-
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999998764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=93.20  E-value=0.043  Score=45.81  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ....|+|+|+||+|||+.+..+++
T Consensus       146 ~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          146 FGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            567899999999999999877665

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=93.19  E-value=0.059  Score=42.21  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=23.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-|+|.|.+|||||+.++.+.++|.
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999987

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=93.15  E-value=0.073  Score=47.36  Aligned_cols=29  Identities=21%  Similarity=0.328  Sum_probs=25.4

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......++|.|++|+|||+.++.+.+.+.
T Consensus       105 ~~~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          105 SLKGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            34677899999999999999999998874

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=93.11  E-value=0.086  Score=46.41  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|+|++|+|||+.++.+.+.+-
T Consensus        76 ~~~~lLL~GppGtGKTtla~~la~~l~  102 (516)
T 1sxj_A           76 VFRAAMLYGPPGIGKTTAAHLVAQELG  102 (516)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            347999999999999999999988763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=93.10  E-value=0.056  Score=44.38  Aligned_cols=28  Identities=29%  Similarity=0.478  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|+|.||+|+|||..++.+-+...
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            4567899999999999999999888543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=93.08  E-value=0.062  Score=43.15  Aligned_cols=27  Identities=22%  Similarity=0.193  Sum_probs=24.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.++|.|++|+|||+.++.+...+.
T Consensus        29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           29 AGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            678899999999999999999998665

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=93.06  E-value=0.068  Score=42.04  Aligned_cols=27  Identities=19%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..-|++.|.+|||||+.++.+.++|.
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            456799999999999999999999986

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.04  E-value=0.066  Score=44.27  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=23.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCccHHHHHHHHHHHc
Confidence            34689999999999999999999876

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.02  E-value=0.1  Score=47.59  Aligned_cols=26  Identities=23%  Similarity=0.417  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +...|+|+|.+|||||+.++.+-+.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            55689999999999999999999987

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=93.02  E-value=0.052  Score=43.92  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=22.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..++|.|++|+|||+.++.+...+.
T Consensus        44 ~~GvlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           44 PAGVLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence            34599999999999999999988643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=93.01  E-value=0.067  Score=47.19  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=23.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|.|++|||||+..+.+...+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            7899999999999999999998776

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=92.87  E-value=0.035  Score=49.74  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+..++.
T Consensus       367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          367 PAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            4778999999999999999999998765

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=92.78  E-value=0.12  Score=45.06  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=26.9

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..+....++|.|++|+|||..++.+.+.+.
T Consensus       195 ~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHhccCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            34445666899999999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.76  E-value=0.036  Score=49.88  Aligned_cols=28  Identities=29%  Similarity=0.501  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|+||||||+..+.+..++.
T Consensus       379 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          379 KPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             CTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4678999999999999999999998765

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=92.75  E-value=0.079  Score=46.09  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=24.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|++.|.+|||||+.++.+.+++.
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3556899999999999999999998764

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=92.75  E-value=0.067  Score=44.81  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|+|+|.+|||||+.++.+.+.+-
T Consensus         5 ~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            5 PPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            35799999999999999999998763

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=92.63  E-value=0.076  Score=44.50  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|+|.|++|+|||..++.+.+.+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            45799999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=92.58  E-value=0.07  Score=40.19  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .|++.|.+|+|||+..+.+...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4889999999999999888764

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=92.55  E-value=0.22  Score=43.07  Aligned_cols=25  Identities=16%  Similarity=0.464  Sum_probs=23.6

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+++.|..|+|||+.++.++.+|.
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~   70 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALI   70 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999998

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=92.51  E-value=0.074  Score=44.55  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|+|+|.||||||+.+..+.+.+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            34689999999999999999988664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=92.50  E-value=0.072  Score=47.44  Aligned_cols=27  Identities=22%  Similarity=0.399  Sum_probs=24.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+.|.|++|||||+..|.+...+.
T Consensus        46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~~   72 (538)
T 1yqt_A           46 EGMVVGIVGPNGTGKSTAVKILAGQLI   72 (538)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            668899999999999999999988665

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=92.45  E-value=0.098  Score=42.87  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|.+.|.+|+|||++++.+..++.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~  123 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999988

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=92.39  E-value=0.2  Score=43.52  Aligned_cols=27  Identities=37%  Similarity=0.540  Sum_probs=24.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|++.|.+|+|||+++..+..++.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999988

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=92.37  E-value=0.072  Score=40.05  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|++.|.+|+|||+..+.+....
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999887743

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=92.28  E-value=0.036  Score=49.77  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|+||||||+..+.+..++.
T Consensus       367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          367 KPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             CTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            4778999999999999999999998765

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=92.19  E-value=0.031  Score=50.06  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+..++.
T Consensus       365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          365 EKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4778999999999999999999988765

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=92.17  E-value=0.071  Score=44.98  Aligned_cols=28  Identities=14%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +....|+|+|.+|+|||+.+..+.+.+-
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            3456899999999999999999998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=92.16  E-value=0.098  Score=42.84  Aligned_cols=31  Identities=16%  Similarity=0.210  Sum_probs=24.9

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......+.+.+.|+||+|||+..+.+...+.
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc
Confidence            3334678899999999999999988877554

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=91.99  E-value=0.1  Score=43.98  Aligned_cols=27  Identities=19%  Similarity=0.255  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..+++.|.+|||||+.++.++..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~   60 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY   60 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence            455678999999999999999998766

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=91.97  E-value=0.095  Score=37.58  Aligned_cols=21  Identities=19%  Similarity=0.286  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~   27 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCK   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999888775

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=91.95  E-value=0.18  Score=43.68  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=39.4

Q ss_pred             hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......-+|...+..-.+.|.+.|.|.+|+|||+.++.|.+++.
T Consensus       156 ~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          156 STEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            46677888888888889999999999999999999999999876

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=91.89  E-value=0.11  Score=43.76  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....|+|.|++|+|||..++.+.+.+-
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~~  173 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAESN  173 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence            457899999999999999999977643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.89  E-value=0.093  Score=46.78  Aligned_cols=28  Identities=25%  Similarity=0.323  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus        23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~~   50 (538)
T 3ozx_A           23 KNNTILGVLGKNGVGKTTVLKILAGEII   50 (538)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            3678899999999999999999988665

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=91.89  E-value=0.043  Score=43.71  Aligned_cols=28  Identities=14%  Similarity=0.256  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|+|.|-.|||||+.++.+.++|.
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3567899999999999999999988873

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=91.85  E-value=0.088  Score=40.61  Aligned_cols=25  Identities=24%  Similarity=0.205  Sum_probs=22.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|.|+|+.|||||+.++.+-+.|-
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999988655

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.84  E-value=0.24  Score=43.19  Aligned_cols=27  Identities=22%  Similarity=0.460  Sum_probs=24.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|++.|.+|+|||+++..+..++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999988

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=91.80  E-value=0.083  Score=46.63  Aligned_cols=31  Identities=26%  Similarity=0.342  Sum_probs=24.6

Q ss_pred             HHHHHHh--hCCCeEEEecCCCCCchhHHHHHH
Q psy18111         87 AYRWLRD--RSEDQCIIVSGESGSGKTQAASMV  117 (186)
Q Consensus        87 a~~~~~~--~~~~Q~IilsGeSGsGKt~~~k~i  117 (186)
                      ++..+..  -.+.+.+.|.|++|||||+.++.+
T Consensus        27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            3444443  257889999999999999999996

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=91.68  E-value=0.073  Score=48.22  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~  128 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQK  128 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            4788999999999999999999988765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=91.64  E-value=0.13  Score=43.67  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|.||+|||+..+.++..+
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccc
Confidence            367899999999999999998888643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.64  E-value=0.11  Score=37.06  Aligned_cols=21  Identities=14%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLK   23 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999888775

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=91.63  E-value=0.078  Score=47.67  Aligned_cols=27  Identities=19%  Similarity=0.497  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++|.|++|+|||+.++.+.+.+.
T Consensus        59 ~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           59 QKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            346899999999999999999999764

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=91.63  E-value=0.18  Score=40.78  Aligned_cols=23  Identities=13%  Similarity=0.099  Sum_probs=21.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +.+++.|+.|.|||+.++.+.+.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            79999999999999999988874

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.62  E-value=0.19  Score=40.68  Aligned_cols=24  Identities=17%  Similarity=0.225  Sum_probs=22.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +.+++.|+.|.|||+.++.+.+.+
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            799999999999999999998864

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=91.57  E-value=0.1  Score=43.73  Aligned_cols=27  Identities=37%  Similarity=0.422  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ...+.+.|.|++|||||+.++.+....
T Consensus       129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          129 ETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            377889999999999999999998865

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=91.56  E-value=0.096  Score=45.28  Aligned_cols=25  Identities=24%  Similarity=0.469  Sum_probs=22.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|+|+|.||+|||+.+..+.+.+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            3689999999999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=91.48  E-value=0.11  Score=45.25  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             hCCCeE--EEecCCCCCchhHHHHHHHHHH
Q psy18111         94 RSEDQC--IIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        94 ~~~~Q~--IilsGeSGsGKt~~~k~il~~l  121 (186)
                      -...+.  +.|.|++|||||+..+.++...
T Consensus        37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           37 VSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             CC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            356677  8999999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=91.36  E-value=0.12  Score=36.83  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999877765

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=91.35  E-value=0.089  Score=39.08  Aligned_cols=21  Identities=29%  Similarity=0.521  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999888765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=91.34  E-value=0.11  Score=37.01  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~   25 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999877765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=91.33  E-value=0.2  Score=46.03  Aligned_cols=32  Identities=28%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..+....++|.|++|+|||..++.+.+.+.
T Consensus       195 ~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          195 VLSRRTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             HHHCSSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             HHhCCCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            34445666799999999999999999999874

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=91.33  E-value=0.15  Score=44.23  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=24.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++.|++.|.+|+|||+++..+..++.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999988

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=91.23  E-value=0.14  Score=39.42  Aligned_cols=23  Identities=26%  Similarity=0.556  Sum_probs=21.9

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|-|.-|||||+-++.+.++|.
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999997

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=91.21  E-value=0.071  Score=40.23  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .....|++.|.+|+|||+..+.+....
T Consensus        24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           24 DTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            456779999999999999988876543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=91.20  E-value=0.059  Score=52.90  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=27.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHhhhcCC
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIACATPG  127 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~  127 (186)
                      ...|.|-|.|+||||||+..+.+++++- ..+|
T Consensus      1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-p~~G 1134 (1321)
T 4f4c_A         1103 EPGQTLALVGPSGCGKSTVVALLERFYD-TLGG 1134 (1321)
T ss_dssp             CTTCEEEEECSTTSSTTSHHHHHTTSSC-CSSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCcc-CCCC
Confidence            4678999999999999999999999876 4444

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=91.16  E-value=0.13  Score=37.98  Aligned_cols=25  Identities=12%  Similarity=0.268  Sum_probs=20.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +...|++.|.+|+|||+..+.+...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999998888753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.14  E-value=0.13  Score=40.64  Aligned_cols=36  Identities=19%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             HHHHHHhhC-CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         87 AYRWLRDRS-EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        87 a~~~~~~~~-~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..+...- +.-+|++.|..|+|||+.+..+.+++.
T Consensus        47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           47 ALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             HHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344444431 224799999999999999999999875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.12  E-value=0.13  Score=36.79  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999999887765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=91.11  E-value=0.066  Score=47.75  Aligned_cols=28  Identities=36%  Similarity=0.398  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus       292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~  319 (538)
T 3ozx_A          292 KEGEIIGILGPNGIGKTTFARILVGEIT  319 (538)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3577899999999999999999988765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=91.04  E-value=0.13  Score=37.53  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999888765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=91.02  E-value=0.14  Score=36.52  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999777664

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=91.00  E-value=0.13  Score=37.27  Aligned_cols=22  Identities=36%  Similarity=0.462  Sum_probs=19.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~   30 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVN   30 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999887765

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=90.98  E-value=0.14  Score=45.10  Aligned_cols=27  Identities=30%  Similarity=0.356  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+..|+|.|++|+|||..++.+.+.+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            566789999999999999999987753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=90.98  E-value=0.14  Score=36.63  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999887765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=90.97  E-value=0.13  Score=38.52  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=19.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +.=.|++.|.+|+|||+..+.+..
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            334699999999999999887765

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=90.90  E-value=0.13  Score=40.21  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+++|.+||||++.++.+.+.+
T Consensus        13 II~itGk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B           13 VLLFSGKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHHHHc
Confidence            58889999999999999998854

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=90.83  E-value=0.14  Score=36.65  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~   28 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVE   28 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            489999999999999888765

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=90.82  E-value=0.14  Score=40.28  Aligned_cols=26  Identities=19%  Similarity=0.220  Sum_probs=22.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-.|.|+|++|||||+.++.+-+.|-
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999988665

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=90.82  E-value=0.38  Score=41.55  Aligned_cols=26  Identities=23%  Similarity=0.474  Sum_probs=23.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..++|.|++|+|||..++.+.+.+-
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            46899999999999999999999864

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=90.80  E-value=0.15  Score=36.71  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCE   28 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999877764

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=90.79  E-value=0.18  Score=41.43  Aligned_cols=26  Identities=35%  Similarity=0.613  Sum_probs=24.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|+++|.+|+|||+++..+..++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999887

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=90.79  E-value=0.13  Score=37.78  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         9 ~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            9 EIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999888875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=90.70  E-value=0.14  Score=46.41  Aligned_cols=28  Identities=21%  Similarity=0.387  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++|||||+..|.+...+.
T Consensus       115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~  142 (607)
T 3bk7_A          115 KDGMVVGIVGPNGTGKTTAVKILAGQLI  142 (607)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            3678999999999999999999888665

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=90.64  E-value=0.15  Score=37.77  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+....+..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~   70 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTT   70 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            699999999999999887765

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=90.55  E-value=0.16  Score=36.87  Aligned_cols=21  Identities=29%  Similarity=0.453  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999887764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=90.53  E-value=0.14  Score=37.22  Aligned_cols=22  Identities=23%  Similarity=0.360  Sum_probs=19.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .|++.|.+|+|||+..+.++.-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999998877663

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=90.52  E-value=0.17  Score=39.19  Aligned_cols=25  Identities=32%  Similarity=0.376  Sum_probs=23.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-|+|-|.-|||||+.++.+.++|.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4699999999999999999999985

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=90.44  E-value=0.16  Score=43.81  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=23.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ....|+|.|++|+|||..++.+.+.+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999999876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=90.42  E-value=0.14  Score=43.98  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=20.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      ..+.+.|.|++|+|||+.++.+.
T Consensus       177 ~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          177 TGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCChHHHHHHHH
Confidence            67789999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=90.37  E-value=0.18  Score=38.12  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=19.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +.-.|++.|.+|+|||...+.++.
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~   29 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLT   29 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445699999999999999887775

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=90.35  E-value=0.17  Score=36.61  Aligned_cols=21  Identities=24%  Similarity=0.287  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~   37 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTE   37 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            599999999999999888765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=90.31  E-value=0.17  Score=36.14  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999887765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=90.30  E-value=0.26  Score=41.25  Aligned_cols=26  Identities=19%  Similarity=0.253  Sum_probs=23.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|.|.|.+|||||+..+.++..+.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~   99 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLT   99 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            56799999999999999999999775

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=90.26  E-value=0.25  Score=38.99  Aligned_cols=27  Identities=15%  Similarity=0.023  Sum_probs=21.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++++|+.|+|||+.+..++.-+.
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~   37 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLE   37 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            467899999999999998766665444

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=90.24  E-value=0.17  Score=36.82  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        20 ki~v~G~~~~GKSsli~~l~~   40 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMY   40 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            599999999999999877764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=90.22  E-value=0.15  Score=36.53  Aligned_cols=21  Identities=33%  Similarity=0.409  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            489999999999999887764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=90.17  E-value=0.17  Score=36.32  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999998877764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=90.17  E-value=0.18  Score=36.97  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999998877765

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=90.15  E-value=0.18  Score=37.16  Aligned_cols=22  Identities=23%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .|++.|.+|+|||+..+.++.-
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999998887763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=90.14  E-value=0.4  Score=38.14  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=27.7

Q ss_pred             CCchHHHhHHHHHHHHHhhCC-CeEEEecCCCCCchhHHHHHHHH
Q psy18111         76 LPPHIFAIAGSAYRWLRDRSE-DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        76 ~~PHi~~~a~~a~~~~~~~~~-~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +|.-+...-.+....+..... .=.|++.|++|+|||+....++.
T Consensus        17 l~~~~~~~l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~   61 (270)
T 1h65_A           17 FAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIG   61 (270)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence            333333333334444444433 33699999999999999888775

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=90.11  E-value=0.19  Score=38.70  Aligned_cols=25  Identities=32%  Similarity=0.640  Sum_probs=20.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+.+++.|++|+|||..+..++..
T Consensus        29 ~G~l~~i~G~pG~GKT~l~l~~~~~   53 (251)
T 2zts_A           29 EGTTVLLTGGTGTGKTTFAAQFIYK   53 (251)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence            5678999999999999988776543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=90.09  E-value=0.18  Score=37.21  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~   43 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQ   43 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999888765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=90.08  E-value=0.22  Score=43.77  Aligned_cols=27  Identities=30%  Similarity=0.304  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -+..|+|.|++|+|||+.++.+...+-
T Consensus        48 ~p~gvLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           48 MPKGILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            456799999999999999999987543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=90.06  E-value=0.2  Score=46.84  Aligned_cols=32  Identities=25%  Similarity=0.276  Sum_probs=27.0

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++..+....++|.|++|+|||+.++.+.+.+.
T Consensus       185 ~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~  216 (854)
T 1qvr_A          185 ILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV  216 (854)
T ss_dssp             HHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence            33455666799999999999999999999885

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=90.06  E-value=0.19  Score=36.16  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=18.8

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.+..
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999877754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=90.00  E-value=0.19  Score=35.91  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+.++.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~   22 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKL   22 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            388999999999999888765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=89.99  E-value=0.3  Score=42.08  Aligned_cols=27  Identities=26%  Similarity=0.277  Sum_probs=23.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+.|.|++|||||+..+.+...+.
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~   94 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGN   94 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence            445899999999999999999988654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=89.94  E-value=0.19  Score=37.46  Aligned_cols=21  Identities=19%  Similarity=0.205  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            699999999999999877665

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=89.92  E-value=0.14  Score=42.02  Aligned_cols=23  Identities=30%  Similarity=0.436  Sum_probs=19.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      =.|++.|++|+|||+..+.+...
T Consensus        19 ~~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           19 FTLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            45799999999999999997653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=89.92  E-value=0.19  Score=36.77  Aligned_cols=21  Identities=24%  Similarity=0.463  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         6 ki~v~G~~~~GKSsli~~l~~   26 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQ   26 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999888775

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=89.92  E-value=0.18  Score=36.42  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            589999999999998877654

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=89.91  E-value=0.39  Score=39.51  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=27.6

Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .+++....++..+++|.|+.|.|||+.++.+.+-
T Consensus         8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~   41 (305)
T 2gno_A            8 TLKRIIEKSEGISILINGEDLSYPREVSLELPEY   41 (305)
T ss_dssp             HHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            3455556556789999999999999999998874

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=89.83  E-value=0.2  Score=36.70  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~   40 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQ   40 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999888775

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=89.80  E-value=0.17  Score=39.35  Aligned_cols=22  Identities=23%  Similarity=0.511  Sum_probs=19.6

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHcC
Confidence            3699999999999999988876

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=89.75  E-value=0.16  Score=37.44  Aligned_cols=21  Identities=19%  Similarity=0.268  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        25 ~i~v~G~~~~GKSsli~~l~~   45 (195)
T 3pqc_A           25 EVAFVGRSNVGKSSLLNALFN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999887765

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=89.73  E-value=0.2  Score=36.42  Aligned_cols=21  Identities=24%  Similarity=0.427  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        14 ki~v~G~~~~GKSsli~~l~~   34 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVK   34 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999877765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.69  E-value=0.21  Score=36.33  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        12 ~i~v~G~~~~GKssli~~l~~   32 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKD   32 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999877765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=89.67  E-value=0.23  Score=36.72  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ...=.|++.|.+|+|||+..+.++.
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHc
Confidence            3445699999999999999887765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=89.65  E-value=0.19  Score=36.44  Aligned_cols=24  Identities=17%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +.-.|++.|.+|+|||+..+.++.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            344699999999999999887764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=89.62  E-value=0.21  Score=43.98  Aligned_cols=28  Identities=32%  Similarity=0.410  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|+|||+.++.+...+.
T Consensus       279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~  306 (525)
T 1tf7_A          279 FKDSIILATGATGTGKTLLVSRFVENAC  306 (525)
T ss_dssp             ESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5778899999999999999999998776

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=89.62  E-value=0.15  Score=44.01  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.3

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      =.|++.|+||+|||+..+.++...
T Consensus        32 f~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           32 FTLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEEECCCCCcHHHHHHHHhCCC
Confidence            347999999999999998887654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=89.60  E-value=0.21  Score=44.17  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +..|+|.|++|+|||+.++.+...+
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4569999999999999999988764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=89.58  E-value=0.21  Score=37.24  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~   36 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMY   36 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999877764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=89.55  E-value=0.12  Score=46.93  Aligned_cols=24  Identities=33%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .+.+.+.|.|+||||||+..+.++
T Consensus       346 ~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          346 PLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             ETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cCCCEEEEEeeCCCCHHHHHHHHH
Confidence            367889999999999999998665

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=89.54  E-value=0.2  Score=35.98  Aligned_cols=20  Identities=35%  Similarity=0.513  Sum_probs=17.6

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .|++.|.+|+|||+..+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999988775

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=89.52  E-value=0.21  Score=36.97  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTR   47 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999998887765

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=89.49  E-value=0.18  Score=36.87  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        12 ki~v~G~~~~GKSsli~~l~~   32 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIE   32 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999887765

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=89.48  E-value=0.19  Score=44.72  Aligned_cols=27  Identities=26%  Similarity=0.325  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.|.|.+|||||+..|.+...+.
T Consensus       311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~  337 (538)
T 1yqt_A          311 KGEVIGIVGPNGIGKTTFVKMLAGVEE  337 (538)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            578899999999999999999988665

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=89.48  E-value=0.14  Score=41.91  Aligned_cols=25  Identities=20%  Similarity=0.295  Sum_probs=21.8

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|++|+|||+.++.+.+.+.
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4799999999999999999888543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=89.40  E-value=0.19  Score=36.32  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999887764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=89.40  E-value=0.11  Score=50.99  Aligned_cols=28  Identities=25%  Similarity=0.508  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|+||||||+..+.+++++-
T Consensus       442 ~~G~~vaivG~sGsGKSTll~ll~~~~~  469 (1321)
T 4f4c_A          442 NAGQTVALVGSSGCGKSTIISLLLRYYD  469 (1321)
T ss_dssp             CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred             cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence            4778999999999999999999999765

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=89.37  E-value=0.19  Score=45.42  Aligned_cols=28  Identities=25%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|++|||||+..|.+...+.
T Consensus       380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~  407 (607)
T 3bk7_A          380 RKGEVIGIVGPNGIGKTTFVKMLAGVEE  407 (607)
T ss_dssp             ETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            3578899999999999999999988655

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=89.37  E-value=0.32  Score=38.04  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-.++++|..|+|||+.+..+..+++
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~   39 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE   39 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            456788899999999999999998775

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=89.31  E-value=0.24  Score=42.90  Aligned_cols=26  Identities=35%  Similarity=0.592  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..|++.|.+|+|||+++..+..+++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999887

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=89.29  E-value=0.22  Score=36.79  Aligned_cols=22  Identities=36%  Similarity=0.285  Sum_probs=18.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            4699999999999999887764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.28  E-value=0.69  Score=38.56  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             HhHHHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.....+.. ..+.-.|+++|..|+|||+.+..+...+.
T Consensus        63 ~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           63 EQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             HHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344444444432 34566899999999999999999998876

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=89.21  E-value=0.3  Score=36.99  Aligned_cols=26  Identities=27%  Similarity=0.350  Sum_probs=21.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..-.|++.|.+|+|||+....+..-.
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            33469999999999999988887643

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=89.19  E-value=0.31  Score=42.25  Aligned_cols=27  Identities=22%  Similarity=0.458  Sum_probs=24.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|++.|..|+|||+++-.+..+|.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999999999999998

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=89.19  E-value=0.11  Score=50.81  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.+.|+||||||+..+.+++++.
T Consensus       414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          414 KSGQTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             CTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4778999999999999999999998765

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=89.17  E-value=0.18  Score=37.29  Aligned_cols=23  Identities=22%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .-.|++.|.+|+|||+..+.++.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34699999999999999888765

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=89.17  E-value=0.22  Score=45.03  Aligned_cols=25  Identities=24%  Similarity=0.496  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.|.|++||||||..+.+...+.
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~  403 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALK  403 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCC
Confidence            5689999999999999999988765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=89.15  E-value=0.23  Score=36.62  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~   38 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFAD   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999888775

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=89.10  E-value=0.24  Score=36.76  Aligned_cols=21  Identities=24%  Similarity=0.302  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999999877765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=89.09  E-value=0.24  Score=36.08  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=18.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            489999999999999877664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=89.04  E-value=0.089  Score=43.65  Aligned_cols=31  Identities=19%  Similarity=0.320  Sum_probs=23.8

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-.+.+.+.+.|.||+|||+..+.++..+.
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~  198 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG  198 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence            3444678999999999999999998876554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=89.03  E-value=0.5  Score=39.20  Aligned_cols=38  Identities=13%  Similarity=0.126  Sum_probs=29.6

Q ss_pred             HHHHHHH-HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         85 GSAYRWL-RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        85 ~~a~~~~-~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+...+ ....+...|.+.|..|+|||+.++.+...+.
T Consensus        43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3444444 2346778899999999999999999998876

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=88.97  E-value=0.42  Score=43.03  Aligned_cols=27  Identities=22%  Similarity=0.430  Sum_probs=24.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..++++|..|+|||++...++..+.
T Consensus       163 ~~~~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          163 TRRISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999887

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=88.96  E-value=0.31  Score=36.89  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=18.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .+.++++|..|+|||+.+..+++
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~   25 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVE   25 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999744444

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=88.96  E-value=0.26  Score=46.09  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=23.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|++|+|||+.++.+.+.+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5899999999999999999999885

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=88.95  E-value=0.56  Score=43.48  Aligned_cols=60  Identities=27%  Similarity=0.478  Sum_probs=33.6

Q ss_pred             eCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHH
Q psy18111         51 VNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        51 vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      +|||..+++ ++..........  .+|-.++   +.+....+.  .++.+++.|++|||||+....++
T Consensus        71 ~~~f~~~~l-~~~~~~~l~~r~--~lP~~~q---~~~i~~~l~--~~~~vii~gpTGSGKTtllp~ll  130 (773)
T 2xau_A           71 INPFTGREF-TPKYVDILKIRR--ELPVHAQ---RDEFLKLYQ--NNQIMVFVGETGSGKTTQIPQFV  130 (773)
T ss_dssp             BCTTTCSBC-CHHHHHHHHHHT--TSGGGGG---HHHHHHHHH--HCSEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCccccCC-CHHHHHHHHHhh--cCChHHH---HHHHHHHHh--CCCeEEEECCCCCCHHHHHHHHH
Confidence            467776653 444443332221  3443332   233333333  35789999999999999655553

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=88.94  E-value=0.25  Score=45.44  Aligned_cols=24  Identities=33%  Similarity=0.400  Sum_probs=22.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++|.|++|+|||+.++.+-+.+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~  546 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF  546 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            699999999999999999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=88.94  E-value=0.21  Score=36.21  Aligned_cols=21  Identities=33%  Similarity=0.461  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999998877764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=88.92  E-value=0.19  Score=36.80  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999887765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=88.86  E-value=0.26  Score=35.87  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=18.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.+..
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999998877664

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=88.86  E-value=0.25  Score=36.90  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVN   30 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999887765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=88.84  E-value=0.19  Score=35.96  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=17.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            489999999999998877643

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=88.80  E-value=0.35  Score=39.75  Aligned_cols=28  Identities=14%  Similarity=0.195  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+++.|.+|+|||+.+..+....+
T Consensus        66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           66 KRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5778999999999999999888887666

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=88.74  E-value=0.26  Score=36.42  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~   44 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYAD   44 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999887765

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=88.67  E-value=0.45  Score=42.64  Aligned_cols=27  Identities=19%  Similarity=0.460  Sum_probs=24.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++.++++|..|+|||++++.++..+.
T Consensus       203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~  229 (574)
T 3e1s_A          203 GHRLVVLTGGPGTGKSTTTKAVADLAE  229 (574)
T ss_dssp             TCSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             hCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999999887

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=88.67  E-value=0.56  Score=34.48  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=20.9

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHH
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .++.=.|++.|.+|+|||+..+.++
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~   37 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFS   37 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHh
Confidence            3455679999999999999988776

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=88.66  E-value=0.26  Score=36.83  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=19.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .=.|++.|.+|+|||+..+.++.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            34699999999999998887764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=88.65  E-value=0.27  Score=36.20  Aligned_cols=21  Identities=33%  Similarity=0.412  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        17 ~i~v~G~~~~GKssli~~l~~   37 (195)
T 1x3s_A           17 KILIIGESGVGKSSLLLRFTD   37 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            599999999999999887765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=88.64  E-value=0.23  Score=36.62  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~   29 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAK   29 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999887765

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=88.62  E-value=0.23  Score=35.90  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=17.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999998777653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=88.60  E-value=0.69  Score=36.63  Aligned_cols=34  Identities=18%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             HHHHHHHhhCC-CeEEEecCCCCCchhHHHHHHHH
Q psy18111         86 SAYRWLRDRSE-DQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        86 ~a~~~~~~~~~-~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +..+.+..... .=.|++.|.+|+|||+....++.
T Consensus        24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~   58 (262)
T 3def_A           24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIG   58 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            33344444333 33699999999999999888775

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=88.49  E-value=0.2  Score=45.12  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |++.|++|||||+..+.+...+.
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl~~   70 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGVAL   70 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSCC-
T ss_pred             EEEECCCCChHHHHHHHHhCCCC
Confidence            89999999999999999998753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=88.47  E-value=0.27  Score=36.59  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=19.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ..=.|++.|.+|+|||+..+.++.
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~   50 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLT   50 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHh
Confidence            334699999999999998877765

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=88.41  E-value=0.28  Score=36.01  Aligned_cols=25  Identities=16%  Similarity=0.179  Sum_probs=19.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .+.=.|++.|.+|+|||+..+.++.
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3445699999999999999777654

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=88.39  E-value=0.28  Score=36.43  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=18.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||...+.++.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~   43 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLT   43 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCcHHHHHHHHHh
Confidence            3699999999999999877765

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=88.37  E-value=0.28  Score=36.37  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~   45 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSK   45 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            699999999999998877765

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=88.27  E-value=0.36  Score=44.25  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.++|.|++|+|||+.++.+.+.+.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~  513 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3799999999999999999988764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=88.25  E-value=0.25  Score=36.00  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         8 ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            589999999999999887763

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=88.25  E-value=0.27  Score=46.99  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      .+.+.+.|.|++|||||+..|.|..
T Consensus       459 ~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          459 KRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3778899999999999999999984

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=88.23  E-value=0.24  Score=36.03  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+.++.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999998777665

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=88.19  E-value=0.35  Score=36.32  Aligned_cols=31  Identities=19%  Similarity=0.255  Sum_probs=22.4

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHH
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      ++.+-...+.=.|++.|.+|+|||+..+.+.
T Consensus        16 l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           16 LQFLGLYKKTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             HHHHTCTTCCEEEEEEEETTSSHHHHHHHHS
T ss_pred             HHHhhccCCCcEEEEECCCCCCHHHHHHHHh
Confidence            3444233344569999999999999988765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=88.18  E-value=0.3  Score=36.19  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        24 ki~v~G~~~~GKSsli~~l~~   44 (188)
T 1zd9_A           24 ELTLVGLQYSGKTTFVNVIAS   44 (188)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999888765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=88.14  E-value=0.25  Score=36.70  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        25 ki~vvG~~~~GKSsli~~l~~   45 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQ   45 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            599999999999999887765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=88.09  E-value=0.32  Score=40.47  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=22.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+++.|++|+|||+.+..+...
T Consensus       120 ~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          120 ESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36678999999999999998887765

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.02  E-value=0.23  Score=39.04  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=20.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .-.|++.|.+|+|||+....++..
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~   45 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRK   45 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            346999999999999998888753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=88.01  E-value=0.15  Score=40.30  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.1

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|.|++|||||+..+.|.-.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            45899999999999999888766

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=88.00  E-value=0.75  Score=37.37  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             HHHHHHHhhC-C-CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         86 SAYRWLRDRS-E-DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        86 ~a~~~~~~~~-~-~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .++...+... . .-+|+|.|..|+|||..++.+.+++
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            3344444443 2 3489999999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.96  E-value=0.24  Score=36.09  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=19.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .+.=.|++.|.+|+|||+..+.+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            345579999999999999876665

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=87.94  E-value=0.29  Score=36.52  Aligned_cols=21  Identities=29%  Similarity=0.241  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999998877654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=87.92  E-value=0.27  Score=36.86  Aligned_cols=22  Identities=27%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~   46 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVE   46 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            3599999999999999887775

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=87.90  E-value=0.18  Score=49.45  Aligned_cols=28  Identities=25%  Similarity=0.485  Sum_probs=25.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+.+.|.|+||||||+..+.+.+++.
T Consensus      1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1057 KKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             CSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4678999999999999999999999765

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=87.87  E-value=0.27  Score=37.33  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.8

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~   48 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQ   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999888765

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.83  E-value=0.28  Score=36.41  Aligned_cols=22  Identities=23%  Similarity=0.144  Sum_probs=19.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .|++.|.+|+|||+..+.++.-
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            5999999999999998887753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=87.83  E-value=0.32  Score=35.67  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~   36 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYS   36 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999765544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=87.83  E-value=0.41  Score=41.33  Aligned_cols=27  Identities=30%  Similarity=0.314  Sum_probs=24.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+++.|.+|+|||+.+..+...++
T Consensus       202 ~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          202 RSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             TTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            667899999999999999999998877

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=87.82  E-value=0.37  Score=40.71  Aligned_cols=27  Identities=22%  Similarity=0.235  Sum_probs=24.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+.|.|++|+|||+.+..+...+.
T Consensus        60 ~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           60 RGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999999988766

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=87.57  E-value=0.37  Score=40.38  Aligned_cols=27  Identities=30%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....+++.|++|+|||+.+..+.....
T Consensus        60 ~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           60 RGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999998887665

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=87.54  E-value=0.29  Score=36.67  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~   30 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSD   30 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999998877764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=87.45  E-value=0.82  Score=40.41  Aligned_cols=26  Identities=35%  Similarity=0.617  Sum_probs=23.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|++.|..|+|||+++..+..++.
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999887

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=87.41  E-value=0.38  Score=37.73  Aligned_cols=33  Identities=21%  Similarity=0.113  Sum_probs=23.4

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+..+...   ..++++|++|+|||..+..++..+
T Consensus       100 ~ai~~~~~~---~~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          100 KALERWLVD---KRGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             HHHHHHTTT---SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHHhC---CCEEEEeCCCCCHHHHHHHHHHHc
Confidence            455544433   348899999999999987776643

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=87.31  E-value=0.36  Score=36.18  Aligned_cols=21  Identities=33%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+....++.
T Consensus        22 ~i~v~G~~~~GKSsli~~l~~   42 (213)
T 3cph_A           22 KILLIGDSGVGKSCLLVRFVE   42 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999887764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=87.28  E-value=0.38  Score=40.62  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=20.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMV  117 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~i  117 (186)
                      ++...|++.|-+|||||+.+|.+
T Consensus        31 ~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHH
Confidence            45678999999999999999998

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=87.28  E-value=0.3  Score=36.79  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      -.|++.|.+|+|||+..+.++.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHhc
Confidence            4699999999999999877765

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=87.04  E-value=0.3  Score=36.66  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999887763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=87.04  E-value=0.29  Score=36.18  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=18.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.+..
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3699999999999999877654

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=87.00  E-value=0.36  Score=35.96  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=18.6

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3599999999999998877764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=86.92  E-value=0.34  Score=36.07  Aligned_cols=21  Identities=29%  Similarity=0.392  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            489999999999998877653

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=86.88  E-value=0.35  Score=39.81  Aligned_cols=28  Identities=29%  Similarity=0.260  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+++.|++|+|||+.+..+.....
T Consensus       105 ~~G~i~~i~G~~GsGKT~la~~la~~~~  132 (324)
T 2z43_A          105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQ  132 (324)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHhHHHHHHHHHHh
Confidence            3567899999999999999988876543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=86.84  E-value=0.27  Score=36.32  Aligned_cols=22  Identities=27%  Similarity=0.305  Sum_probs=18.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      -.|++.|.+|+|||+..+.++.
T Consensus        18 ~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           18 LQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEECCTTSCHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999998877654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=86.84  E-value=0.33  Score=36.85  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~   50 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAK   50 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            599999999999999887765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=86.74  E-value=0.15  Score=43.13  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=19.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .++|.|++|||||+..+.|.-.+
T Consensus        62 ~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            89999999999999998875443

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=86.67  E-value=0.35  Score=35.79  Aligned_cols=21  Identities=24%  Similarity=0.210  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+.++.
T Consensus        20 ki~v~G~~~~GKssli~~l~~   40 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAN   40 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999998877775

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=86.64  E-value=0.43  Score=35.79  Aligned_cols=34  Identities=24%  Similarity=0.184  Sum_probs=24.2

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +|+..++.   .+.+++.+++|+|||..+-.++..+.
T Consensus        40 ~~i~~~~~---~~~~li~~~tGsGKT~~~~~~~~~~~   73 (216)
T 3b6e_A           40 EVAQPALE---GKNIIICLPTGSGKTRVAVYIAKDHL   73 (216)
T ss_dssp             HHHHHHHT---TCCEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc---CCCEEEEcCCCCCHHHHHHHHHHHHH
Confidence            44444443   35699999999999998877666543

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.56  E-value=0.52  Score=40.81  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|++.|.+|+|||..++.+...+-
T Consensus       204 ~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          204 DPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            3566899999999999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=86.54  E-value=0.39  Score=36.29  Aligned_cols=21  Identities=29%  Similarity=0.306  Sum_probs=17.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999998777653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=86.49  E-value=0.4  Score=39.19  Aligned_cols=26  Identities=27%  Similarity=0.222  Sum_probs=22.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ...+.+++.|++|+|||+.+..+...
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            36678999999999999998877754

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=86.47  E-value=0.42  Score=35.75  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+.++.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999887764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=86.44  E-value=0.3  Score=35.83  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+..+.++.
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999887764

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=86.43  E-value=0.41  Score=44.70  Aligned_cols=26  Identities=15%  Similarity=0.319  Sum_probs=22.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+.++|+|++|||||+..|.+....
T Consensus       606 ~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          606 QRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHH
Confidence            55789999999999999999987753

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=86.40  E-value=0.42  Score=36.89  Aligned_cols=20  Identities=30%  Similarity=0.523  Sum_probs=16.4

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .++++|..|||||..+..++
T Consensus         7 i~l~tG~pGsGKT~~a~~~~   26 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMM   26 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46899999999999875543

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=86.34  E-value=0.31  Score=36.66  Aligned_cols=20  Identities=35%  Similarity=0.513  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .|++.|.+|+|||+..+.+.
T Consensus        25 ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999987764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=86.24  E-value=0.33  Score=37.32  Aligned_cols=22  Identities=32%  Similarity=0.484  Sum_probs=18.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+....++.
T Consensus        30 ~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           30 KTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4699999999999998877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=86.21  E-value=0.23  Score=36.26  Aligned_cols=21  Identities=29%  Similarity=0.329  Sum_probs=9.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999877654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=86.18  E-value=0.38  Score=40.49  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+|++|||||+....|.--+.
T Consensus        25 ~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhc
Confidence            567899999999999866664444

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=86.11  E-value=0.39  Score=36.00  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            599999999999998877665

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=86.04  E-value=0.61  Score=40.98  Aligned_cols=42  Identities=21%  Similarity=0.130  Sum_probs=34.6

Q ss_pred             HHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         81 FAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        81 ~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...-++...|..-.+.|.++|.|.+|.|||+.++.++....
T Consensus       135 l~TGir~ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          135 LETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             ECCSCHHHHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHhhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            344445677777778999999999999999999999988766

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=86.04  E-value=0.36  Score=36.69  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        36 ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHc
Confidence            599999999999999887764

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=86.02  E-value=0.36  Score=41.11  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++.+++.|.+|||||+..+.++..+.
T Consensus        52 ~~~h~~i~G~tGsGKs~~~~~li~~~~   78 (437)
T 1e9r_A           52 EPRHLLVNGATGTGKSVLLRELAYTGL   78 (437)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHHHH
Confidence            467799999999999999888888776

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=85.91  E-value=0.43  Score=41.57  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...|++.|.+|+|||+.++.+-+.+-
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            45799999999999999999988764

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=85.86  E-value=0.94  Score=39.18  Aligned_cols=43  Identities=14%  Similarity=0.017  Sum_probs=37.8

Q ss_pred             HHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         80 IFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        80 i~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+..+|.-.|.--.+.|.+.|.|.+|.|||+.+..|.+...
T Consensus       158 ~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          158 PKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             TTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             chhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            4567778888888889999999999999999999999998765

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=85.81  E-value=0.41  Score=36.01  Aligned_cols=21  Identities=19%  Similarity=0.300  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            499999999999999887754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=85.80  E-value=0.47  Score=36.14  Aligned_cols=21  Identities=19%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+.++.
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~   49 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAK   49 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            599999999999998887765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=85.73  E-value=0.48  Score=36.18  Aligned_cols=21  Identities=33%  Similarity=0.469  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        15 ki~v~G~~~vGKSsli~~l~~   35 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTK   35 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            589999999999998877765

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=85.71  E-value=0.42  Score=39.25  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+|.|++|||||+....+.-.
T Consensus        26 ~~~i~G~NGsGKS~ll~ai~~l   47 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAIKWV   47 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHT
T ss_pred             cEEEECCCCCcHHHHHHHHHHH
Confidence            7899999999999998886643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=85.69  E-value=0.39  Score=36.73  Aligned_cols=20  Identities=35%  Similarity=0.577  Sum_probs=17.8

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |+++|-+|||||+.+..+..
T Consensus         2 ilV~Gg~~SGKS~~A~~la~   21 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            78999999999999988764

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=85.64  E-value=0.73  Score=34.42  Aligned_cols=25  Identities=28%  Similarity=0.285  Sum_probs=18.4

Q ss_pred             eEEEecCCCCCchhHHH-HHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAA-SMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~-k~il~~l~  122 (186)
                      +.+++.+++|+|||... -.+++.+.
T Consensus        39 ~~~li~~~TGsGKT~~~~~~~~~~l~   64 (207)
T 2gxq_A           39 KDLIGQARTGTGKTLAFALPIAERLA   64 (207)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             CCEEEECCCCChHHHHHHHHHHHHHh
Confidence            45999999999999874 44455443

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=85.63  E-value=0.88  Score=38.39  Aligned_cols=36  Identities=25%  Similarity=0.373  Sum_probs=25.3

Q ss_pred             hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||...-...-.-...+.|-||+..|.+|||||.+.
T Consensus        75 ~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm  110 (354)
T 3gbj_A           75 IVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM  110 (354)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred             HHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence            355444332223334688999999999999999986

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.63  E-value=0.63  Score=40.43  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+-.|+|.|.+|+|||..++.+...+-
T Consensus       213 ~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          213 KPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            3567899999999999999999988765

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=85.62  E-value=0.69  Score=35.44  Aligned_cols=25  Identities=16%  Similarity=0.104  Sum_probs=19.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ..+-+++.|..|||||+.+-.+.+-
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r   31 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRR   31 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHH
Confidence            4578999999999999765544443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=85.62  E-value=0.42  Score=35.92  Aligned_cols=21  Identities=19%  Similarity=0.156  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        11 ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           11 KCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            589999999999999877664

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=85.55  E-value=0.53  Score=35.46  Aligned_cols=24  Identities=21%  Similarity=0.163  Sum_probs=19.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +.=.|++.|.+|+|||+..+.++.
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHh
Confidence            344699999999999998877664

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=85.51  E-value=0.87  Score=34.56  Aligned_cols=34  Identities=21%  Similarity=0.245  Sum_probs=22.2

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHH-HHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQA-ASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~-~k~il~~l~  122 (186)
                      +|+..+...   +.+++.+++|+|||.. .-.+++.+.
T Consensus        43 ~~i~~~~~~---~~~lv~~pTGsGKT~~~~~~~l~~l~   77 (224)
T 1qde_A           43 RAIMPIIEG---HDVLAQAQSGTGKTGTFSIAALQRID   77 (224)
T ss_dssp             HHHHHHHTT---CCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcC---CCEEEECCCCCcHHHHHHHHHHHHHh
Confidence            444444433   4499999999999987 444555443

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=85.50  E-value=0.32  Score=38.86  Aligned_cols=20  Identities=35%  Similarity=0.581  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .|++.|++|+|||+....++
T Consensus        10 ~I~vvG~~g~GKSTLin~L~   29 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLF   29 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            59999999999999987754

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=85.47  E-value=0.46  Score=44.12  Aligned_cols=25  Identities=12%  Similarity=0.303  Sum_probs=22.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.++|+|.+|||||+..|.+....
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~  600 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIA  600 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhh
Confidence            5789999999999999999988754

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=85.47  E-value=0.59  Score=34.07  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=20.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...+|.|+.|||||+....|.--|.
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l~   48 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGLY   48 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHc
Confidence            34678999999999999877665443

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=85.44  E-value=0.65  Score=39.10  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+++.|++|+|||+.+..+...++
T Consensus        62 ~G~ii~I~G~pGsGKTtLal~la~~~~   88 (356)
T 1u94_A           62 MGRIVEIYGPESSGKTTLTLQVIAAAQ   88 (356)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            567899999999999999988887665

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=85.32  E-value=0.88  Score=38.24  Aligned_cols=22  Identities=18%  Similarity=0.290  Sum_probs=19.7

Q ss_pred             hhCCCeEEEecCCCCCchhHHH
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      ..+.|-||+..|.+|||||.+.
T Consensus        91 l~G~N~tifAYGQTGSGKTyTM  112 (344)
T 3dc4_A           91 LEGFQCTALAYGQTGTGKSYSM  112 (344)
T ss_dssp             HHTCCEEEEEESSTTSSHHHHH
T ss_pred             hCCCceEEEEecCCCCCCCeEE
Confidence            4578899999999999999986

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.21  E-value=0.68  Score=40.19  Aligned_cols=28  Identities=21%  Similarity=0.243  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+-.|+|.|.+|+|||..++.+...+-
T Consensus       213 ~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          213 RAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            3467899999999999999999988654

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=85.12  E-value=0.93  Score=37.77  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.7

Q ss_pred             hhCCCeEEEecCCCCCchhHHH
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      ..+.|-+|+..|.+|||||.+.
T Consensus        74 l~G~n~tifAYGqTGSGKTyTm   95 (325)
T 1bg2_A           74 LEGYNGTIFAYGQTSSGKTHTM   95 (325)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCeEEEEEECCCCCCCceEe
Confidence            4578899999999999999986

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=85.02  E-value=0.75  Score=38.93  Aligned_cols=37  Identities=19%  Similarity=0.136  Sum_probs=26.5

Q ss_pred             chHHHh-HHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         78 PHIFAI-AGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        78 PHi~~~-a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      -.||.- +.......+..+.+-+|+-.|.+|||||.+.
T Consensus        65 ~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM  102 (360)
T 1ry6_A           65 FTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (360)
T ss_dssp             HHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence            355652 3334445556677888999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=84.99  E-value=0.33  Score=46.41  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|.+|||||+..|.+...+.
T Consensus       697 ~~GeivaIiGpNGSGKSTLLklLaGll~  724 (986)
T 2iw3_A          697 SLSSRIAVIGPNGAGKSTLINVLTGELL  724 (986)
T ss_dssp             ETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4667899999999999999999988654

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=84.97  E-value=0.59  Score=36.56  Aligned_cols=22  Identities=36%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      -+|.++|-.|||||+.++.+-+
T Consensus        10 ~~iglTGgigsGKStv~~~l~~   31 (210)
T 4i1u_A           10 YAIGLTGGIGSGKTTVADLFAA   31 (210)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988766

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	186
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	6e-72
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	4e-68
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	3e-67
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	8e-67
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-66
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	4e-66

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score =  227 bits (580), Expect = 6e-72
 Identities = 83/175 (47%), Positives = 123/175 (70%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTR 71
           G  D VLL+ ++E+ FI NL +R+K D+IYTYIG+V+++ NP+K LNIY     +AY  R
Sbjct: 1   GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGR 60

Query: 72  GPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPV 131
             +++PPH++A+A  AYR +R   E+QC+I+SGESG+GKT+A+  ++ F+   +    P 
Sbjct: 61  YKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPN 120

Query: 132 LNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
              + + L    PLLEAFGNA+TL+NDNSSRFGKY++++F+  G P+G  ITN  
Sbjct: 121 GERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNAVGSPIGGKITNYL 175

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  218 bits (555), Expect = 4e-68
 Identities = 75/184 (40%), Positives = 105/184 (57%), Gaps = 12/184 (6%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L+E + + NL  RY    IYTY G   V +NPYK L IYS ++   Y+ +   
Sbjct: 9   DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRH 68

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIAC----------- 123
           ++PPHI+AIA +AYR +    EDQ I+ +GESG+GKT+    V+ ++A            
Sbjct: 69  EMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDT 128

Query: 124 -ATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHI 182
             T G       + ++L    P+LEAFGNA+T+KNDNSSRFGK++ I FD  G  +GA+I
Sbjct: 129 SITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDVTGYIVGANI 188

Query: 183 TNCK 186
               
Sbjct: 189 ETYL 192

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score =  216 bits (550), Expect = 3e-67
 Identities = 70/176 (39%), Positives = 100/176 (56%), Gaps = 3/176 (1%)

Query: 12  GAWDCVLLDPLSEDTFISNLHLRY-KRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRT 70
           G  D   L  L E   + NL +R+     IYTY G VLV +NPY+ L IY  ++  AY  
Sbjct: 8   GENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSG 67

Query: 71  RGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP 130
           +    + PHIFA+A  AY+ +     +Q IIVSGESG+GKT +A   + + A  +     
Sbjct: 68  QNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASE 127

Query: 131 VLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
               V EK+    P++E+ GNA+T +NDNSSRFGKY++I FD +   +GA++    
Sbjct: 128 --ANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDKRYRIIGANMRTYL 181

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  214 bits (546), Expect = 8e-67
 Identities = 68/173 (39%), Positives = 105/173 (60%), Gaps = 1/173 (0%)

Query: 15  DCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPF 74
           D   L  L+E     NL +RY +D IYTY G  LV VNP+K + IY+ E+   ++ R   
Sbjct: 43  DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRN 102

Query: 75  QLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVV-YFIACATPGTGPVLN 133
           ++ PHIFAI+  AYR + D  ++Q ++++GESG+GKT+    V+ Y  + A         
Sbjct: 103 EVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSG 162

Query: 134 AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFDYKGDPLGAHITNCK 186
            + +++    P+LEAFGNA+T +N+NSSRFGK+++I+F+  G   GA I +  
Sbjct: 163 VLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNNAGFISGASIQSYL 215

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  215 bits (548), Expect = 1e-66
 Identities = 65/194 (33%), Positives = 104/194 (53%), Gaps = 12/194 (6%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D   +  L+E + + NL  RY    IYTY G   + VNPY+ L IY
Sbjct: 29  MNPPKFEKLE----DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIY 84

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           +  +   YR +   ++PPH+F++A +AY+ +    E+Q  +++GESG+GKT+    V+ +
Sbjct: 85  TDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMY 144

Query: 121 IACATPGTGPVLN--------AVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
           +A                   ++ +++    P+LEA+GNA+T +N+NSSRFGK++ I F 
Sbjct: 145 LAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFG 204

Query: 173 YKGDPLGAHITNCK 186
             G   GA I    
Sbjct: 205 PTGKIAGADIETYL 218

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  214 bits (545), Expect = 4e-66
 Identities = 73/194 (37%), Positives = 107/194 (55%), Gaps = 12/194 (6%)

Query: 1   MDPPLVVDSETGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIY 60
           M+PP     E    D  ++  L E   + NL  RY    IYTY G   VTVNPYK L +Y
Sbjct: 31  MNPPKYDKIE----DMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVY 86

Query: 61  SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYF 120
           + ++  AYR +   + PPHIF+I+ +AY+++    E+Q I+++GESG+GKT     V+ +
Sbjct: 87  NPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQY 146

Query: 121 IACATPG--------TGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIEFD 172
            A             +G +   + +++    PLLEAFGNA+T++NDNSSRFGK++ I F 
Sbjct: 147 FATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFG 206

Query: 173 YKGDPLGAHITNCK 186
             G    A I    
Sbjct: 207 ATGKLASADIETYL 220

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	186
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	100.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	100.0
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	100.0
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.32
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.1
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.1
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.01
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.0
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.97
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.95
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.94
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.87
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.87
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.79
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.78
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.66
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.63
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.52
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.44
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.36
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.36
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.33
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.31
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.3
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.27
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.26
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.21
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.2
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.19
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.14
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.12
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.11
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.11
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.09
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.08
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.04
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.99
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	95.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.97
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.93
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.91
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.89
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.88
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.84
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.79
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	95.77
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.75
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.74
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.73
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.73
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.7
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.69
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.56
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	95.48
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	95.44
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.43
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.39
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.39
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.37
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	95.34
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.31
d2awna2	232	Maltose transport protein MalK, N-terminal domain	95.3
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.29
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	95.27
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	95.23
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.21
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	95.2
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.09
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.07
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.07
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.05
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	95.03
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.02
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.01
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.97
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	94.87
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	94.84
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	94.81
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	94.71
d1okkd2	207	GTPase domain of the signal recognition particle r	94.71
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.64
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	94.49
d1vmaa2	213	GTPase domain of the signal recognition particle r	94.44
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.43
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	94.37
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	94.26
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	94.26
d2qy9a2	211	GTPase domain of the signal recognition particle r	94.25
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.21
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.18
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	93.99
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.93
d1j8yf2	211	GTPase domain of the signal sequence recognition p	93.91
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.91
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	93.89
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.86
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	93.85
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.85
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.84
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.72
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.71
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	93.67
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	93.59
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.51
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.44
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.21
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.07
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	93.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	92.89
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	92.72
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.38
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.36
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.33
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	92.32
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	92.11
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	92.09
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.03
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	92.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	91.98
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	91.94
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	91.79
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.74
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.58
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	91.5
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.46
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.32
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	91.17
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	91.17
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	91.12
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	91.09
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.08
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	90.98
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.98
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	90.93
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	90.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	90.87
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.84
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.8
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	90.77
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	90.68
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	90.66
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	90.63
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	90.61
d2fh5b1	207	Signal recognition particle receptor beta-subunit	90.47
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	90.39
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	90.39
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.38
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	90.31
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	90.26
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	90.23
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	90.2
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.19
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	90.11
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	90.04
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	90.01
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	90.0
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.99
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	89.89
d1nrjb_	209	Signal recognition particle receptor beta-subunit	89.85
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	89.75
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	89.75
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	89.73
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	89.72
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.66
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	89.64
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	89.6
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	89.55
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	89.48
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	89.44
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	89.36
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	89.34
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	89.3
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.27
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.25
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	89.24
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	89.2
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.17
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	89.16
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	89.1
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	89.07
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	89.04
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	89.01
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	88.98
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	88.98
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	88.96
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	88.75
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	88.72
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	88.68
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	88.55
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	88.49
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	88.15
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.08
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	87.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	87.74
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.31
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	87.1
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	87.08
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	86.91
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	86.87
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.71
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	86.5
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	86.4
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	86.22
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	86.14
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	86.06
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	85.8
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	85.74
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.7
d1tuea_	205	Replication protein E1 helicase domain {Human papi	85.49
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	84.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	84.86
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.69
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	84.32
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	84.24
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	84.18
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	84.08
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	84.08
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	83.51
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	83.39
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	83.38
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	83.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.54
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	81.07
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	80.58
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	80.53
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.25
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	80.05

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=2.6e-60  Score=436.52  Aligned_cols=175  Identities=39%  Similarity=0.688  Sum_probs=165.7

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|+++||++||++|++||.+++||||+|++||+||||+.+|+|+++++..|+++...++|||||++|++||+.
T Consensus        39 ~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~  118 (712)
T d1d0xa2          39 DGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRS  118 (712)
T ss_dssp             TTCSBGGGCSSCCHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             cCCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC--CchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEE
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG--PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLD  168 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~--~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~  168 (186)
                      |+..+++||||++|||||||||++|.+++||+ .+++..  +....++++|++++|||||||||||.+|+||||||||++
T Consensus       119 m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~-~~s~~~~~~~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~  197 (712)
T d1d0xa2         119 MLDDRQNQSLLITGESGAGKTENTKKVIQYLA-SVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIE  197 (712)
T ss_dssp             HHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHSCC-----CHHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEE
T ss_pred             HHHhCCCceEEEeCCCCCCHHHHHHHHHHHHH-HHhCCCcccccchHHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEE
Confidence            99999999999999999999999999999999 665432  334578999999999999999999999999999999999


Q ss_pred             EEEcCCCCeeeeEecccC
Q psy18111        169 IEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       169 l~f~~~g~i~ga~i~~y~  186 (186)
                      |+|+.+|+|+||+|.+||
T Consensus       198 l~f~~~g~i~ga~i~~yL  215 (712)
T d1d0xa2         198 IQFNNAGFISGASIQSYL  215 (712)
T ss_dssp             EEECTTSCEEEEEEEEEC
T ss_pred             EEEcCCCccccceeEEec
Confidence            999999999999999996

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=8e-60  Score=437.49  Aligned_cols=175  Identities=35%  Similarity=0.616  Sum_probs=165.7

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|+++||++||++|+.||.+++||||+|++||+||||+++|+|+++++..|+++...++|||||++|++||++
T Consensus        35 ~~v~Dl~~L~~l~E~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~  114 (789)
T d1kk8a2          35 EKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYRRLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQN  114 (789)
T ss_dssp             TTCSBGGGSSCCSHHHHHHHHHHHHHTTCCEEEETTEEEEECCSSCCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHH
T ss_pred             cCcchhccCCCCCHHHHHHHHHHHHcCCCceEeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC---------CchhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG---------PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSS  161 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~---------~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSS  161 (186)
                      |+..+++||||++|||||||||++|.+++||+ ..++..         +....++++|++++|||||||||||.+|+|||
T Consensus       115 m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~-~~~~~~~~~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSS  193 (789)
T d1kk8a2         115 MVTDRENQSCLITGESGAGKTENTKKVIMYLA-KVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSS  193 (789)
T ss_dssp             HHHHTSEEEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCCCC--------CCCHHHHHHHHHHHHHHHHEECCSSCTTEE
T ss_pred             HHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HHhcccccccccccccccccHHHHHHHHhHHHHhccccCCCCCCccC
Confidence            99999999999999999999999999999999 665422         12346899999999999999999999999999


Q ss_pred             CceeeEEEEEcCCCCeeeeEecccC
Q psy18111        162 RFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       162 R~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||||++|+|+.+|+|+||+|.+||
T Consensus       194 RFGk~~~l~f~~~g~i~ga~i~~yL  218 (789)
T d1kk8a2         194 RFGKFIRIHFGPTGKIAGADIETYL  218 (789)
T ss_dssp             SSEEEEEEEECTTSSEEEEEEEEEC
T ss_pred             CcceeEEEEECCCCCCccceeEEec
Confidence            9999999999999999999999997

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=9.7e-60  Score=433.06  Aligned_cols=174  Identities=42%  Similarity=0.691  Sum_probs=163.8

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      ++|||+.|++|||++||++|++||.+++||||+|++||+||||+++++|+++++..|+++...++|||||++|++||+.|
T Consensus         6 ~veDl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~k~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m   85 (710)
T d1br2a2           6 KVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSM   85 (710)
T ss_dssp             TCSBTTSCSSCSHHHHHHHHHHHHHTTCCEEECSSSEEEECCSSCCTTCCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHH
T ss_pred             cCchhhcCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCC-------------chhhHHHHHhhccchHHhhcCccccCCC
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGP-------------VLNAVREKLKHIGPLLEAFGNAQTLKND  158 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~-------------~~~~~~~~i~~~~~iLeaFgnakT~~N~  158 (186)
                      +..+++||||++|||||||||++|+|++||+ ..++...             ....++++|++++|||||||||||.+|+
T Consensus        86 ~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT~~N~  164 (710)
T d1br2a2          86 LQDREDQSILCTGESGAGKTENTKKVIQYLA-VVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKND  164 (710)
T ss_dssp             HHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHHC------------------CHHHHHHTTHHHHHHHHHEECCSSCT
T ss_pred             HHhCCCcEEEEEeCCCCCHHHHHHHHHHHHH-HHhccCCCccccccccccccccchHHHHHHHHHHHHHHhCCCccCCCC
Confidence            9999999999999999999999999999999 5543221             1246899999999999999999999999


Q ss_pred             CCCCceeeEEEEEcCCCCeeeeEecccC
Q psy18111        159 NSSRFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       159 nSSR~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ||||||||++|+|+.+|+|+||+|.+||
T Consensus       165 NSSRfgk~~~l~f~~~g~i~ga~i~~yl  192 (710)
T d1br2a2         165 NSSRFGKFIRINFDVTGYIVGANIETYL  192 (710)
T ss_dssp             TEESSEEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCCCcceeeeeEEcCCCcEEEEEEEEec
Confidence            9999999999999999999999999996

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=100.00  E-value=2.3e-59  Score=429.03  Aligned_cols=174  Identities=48%  Similarity=0.867  Sum_probs=166.5

Q ss_pred             CCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHHH
Q psy18111         12 GAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRWL   91 (186)
Q Consensus        12 ~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~   91 (186)
                      |||||+.|+++||++||++|++||.+++||||+|++||+||||+++++|+++.+..|+++...++|||||++|++||++|
T Consensus         1 gv~Dl~~L~~l~e~~vl~~L~~Ry~~~~iYT~~G~iLiavNP~~~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l   80 (684)
T d1lkxa_           1 GVPDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFKNLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSM   80 (684)
T ss_dssp             CCSSGGGCSSCSHHHHHHHHHHHHHTTCCEEESSSCEEEECCSSCCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHH
T ss_pred             CcccccCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCC-CCchhhHHHHHhhccchHHhhcCccccCCCCCCCceeeEEEE
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGT-GPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKYLDIE  170 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~-~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~~~l~  170 (186)
                      +..+++||||++|||||||||++|.|++||+ .+++. ......++++|+++++||||||||||.+|+||||||||++|+
T Consensus        81 ~~~~~~QsIiisGeSGsGKTe~~k~il~yL~-~~s~~~~~~~~~i~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~  159 (684)
T d1lkxa_          81 RQSQENQCVIISGESGAGKTEASKKIMQFLT-FVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQ  159 (684)
T ss_dssp             HHHCCCEEEEEECSTTSSHHHHHHHHHHHHH-HHSCSSCHHHHHHHHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEE
T ss_pred             HHcCCCeEEEEEcCCCCCHHHHHHHHHHHHH-HHcCCCCCccchHHHHHHhhhhhhhhcccccccCCCCcCceeeEEEEE
Confidence            9999999999999999999999999999999 66543 334467899999999999999999999999999999999999


Q ss_pred             EcCCCCeeeeEecccC
Q psy18111        171 FDYKGDPLGAHITNCK  186 (186)
Q Consensus       171 f~~~g~i~ga~i~~y~  186 (186)
                      |+.+|+++||+|.+||
T Consensus       160 f~~~g~i~ga~i~~yl  175 (684)
T d1lkxa_         160 FNAVGSPIGGKITNYL  175 (684)
T ss_dssp             ECTTCCEEEEEEEEEC
T ss_pred             ecCCCcEeeEEEEEee
Confidence            9999999999999996

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=6.6e-60  Score=438.31  Aligned_cols=175  Identities=39%  Similarity=0.659  Sum_probs=165.6

Q ss_pred             CCCCCccCCCCCCHHHHHHHHHHHHhcCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHHHHHH
Q psy18111         11 TGAWDCVLLDPLSEDTFISNLHLRYKRDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGSAYRW   90 (186)
Q Consensus        11 ~~~~Dl~~L~~l~e~~il~~L~~Ry~~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~   90 (186)
                      .++|||+.|++|||++||++|++||.+++||||+|++||+||||+++|+|+++++..|+++...++|||||++|++||+.
T Consensus        37 d~veDl~~L~~lnE~~vL~~L~~Ry~~~~iYT~~G~iLiavNPyk~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~  116 (794)
T d2mysa2          37 DKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQF  116 (794)
T ss_dssp             SSCSBGGGCSCCCHHHHHHHHHHTTTTTCCEEECSSCEEEECCSSCCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHH
T ss_pred             cCcchhcCCCCCCHHHHHHHHHHHHcCCCceeeECCEEEEECCCCCCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCC---------CchhhHHHHHhhccchHHhhcCccccCCCCCC
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTG---------PVLNAVREKLKHIGPLLEAFGNAQTLKNDNSS  161 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~---------~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSS  161 (186)
                      |+..+++||||++|||||||||++|+|++||+ .+++++         +....++++|++++|||||||||||.+|+|||
T Consensus       117 m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSS  195 (794)
T d2mysa2         117 MLTDRENQSILITGESGAGKTVNTKRVIQYFA-TIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSS  195 (794)
T ss_dssp             HHHHTCCEEEEEEECTTSCHHHHHHHHHHHHH-HHTCCCC-----------CCHHHHHHHHHHHHHHHHEECCSSCSSEE
T ss_pred             HHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHH-HHcCCCCCccccccccccCcHHHHHHHhhhHHHHhcCCcccccCChh
Confidence            99999999999999999999999999999999 655432         12357899999999999999999999999999


Q ss_pred             CceeeEEEEEcCCCCeeeeEecccC
Q psy18111        162 RFGKYLDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       162 R~gk~~~l~f~~~g~i~ga~i~~y~  186 (186)
                      |||||++|+|+.+|+|+||+|.+||
T Consensus       196 RFgk~~~l~f~~~g~i~ga~i~~yl  220 (794)
T d2mysa2         196 RFGKFIRIHFGATGKLASADIETYL  220 (794)
T ss_dssp             CSEEEEEEEECSSSSEEECCEEEEC
T ss_pred             hhheeeeeEECCCCCEeeEEEEEEe
Confidence            9999999999999999999999996

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=100.00  E-value=2.9e-58  Score=424.48  Aligned_cols=177  Identities=41%  Similarity=0.656  Sum_probs=167.3

Q ss_pred             CCCCCCCCccCCCCCCHHHHHHHHHHHHh-cCCccccccceEEEeCCCCCCCCCCHHHHHHHhcCCCCCCCchHHHhHHH
Q psy18111          8 DSETGAWDCVLLDPLSEDTFISNLHLRYK-RDHIYTYIGNVLVTVNPYKPLNIYSAELARAYRTRGPFQLPPHIFAIAGS   86 (186)
Q Consensus         8 ~~~~~~~Dl~~L~~l~e~~il~~L~~Ry~-~~~iyT~~g~~Li~vNP~~~l~~y~~~~~~~y~~~~~~~~~PHi~~~a~~   86 (186)
                      +...++|||+.|+++||++||++|+.||. .+.||||+|++||+||||+++|+|+++++..|+++...++|||||++|++
T Consensus         4 ~~l~~~~Dl~~L~~l~e~~vl~~L~~Ry~~~~~iYT~~G~iLiaiNP~~~~~~y~~~~~~~y~~~~~~~~~PHif~vA~~   83 (730)
T d1w7ja2           4 DILVGENDLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYEQLPIYGEDIINAYSGQNMGDMDPHIFAVAEE   83 (730)
T ss_dssp             GGGTTCSSSTTCSCCSHHHHHHHHHHHHHHHCCCEEEETTEEEEECCSSCCSCCSHHHHHHHTTCCGGGSCCCHHHHHHH
T ss_pred             ccccCcchhhcCCCCCHHHHHHHHHHHhccCCceeeeECCEEEEECCCCCCCCCCHHHHHHHcCCCcCCCCCcHHHHHHH
Confidence            45567999999999999999999999996 56799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHhhhcCCCCCchhhHHHHHhhccchHHhhcCccccCCCCCCCceee
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIACATPGTGPVLNAVREKLKHIGPLLEAFGNAQTLKNDNSSRFGKY  166 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~~~~~~~~~~~~~~~~~i~~~~~iLeaFgnakT~~N~nSSR~gk~  166 (186)
                      ||+.|+..+++||||++|||||||||++|.+++||+ ..++.. ....++++|+++++||||||||||.+|+||||||||
T Consensus        84 Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~-~~s~~~-~~~~~~~~i~~~n~ileaFGnAkT~~N~NSSRfgk~  161 (730)
T d1w7ja2          84 AYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFA-TVSGSA-SEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKY  161 (730)
T ss_dssp             HHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHH-HHTCCS-SSSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEE
T ss_pred             HHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHH-HHcCCC-ccccHHHHHHHHHHHHHHhcccccCCCCCcccceee
Confidence            999999999999999999999999999999999999 776543 335688999999999999999999999999999999


Q ss_pred             EEEEEcCCCCeeeeEecccC
Q psy18111        167 LDIEFDYKGDPLGAHITNCK  186 (186)
Q Consensus       167 ~~l~f~~~g~i~ga~i~~y~  186 (186)
                      ++|+|+.+|+|+||+|.+||
T Consensus       162 ~~l~f~~~g~i~ga~i~~yl  181 (730)
T d1w7ja2         162 IEIGFDKRYRIIGANMRTYL  181 (730)
T ss_dssp             EEEEECTTSCEEEEEEEEEC
T ss_pred             eeeeecCCCCEEEEEEEEcc
Confidence            99999999999999999996

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.32  E-value=7.9e-05  Score=53.39  Aligned_cols=28  Identities=21%  Similarity=0.280  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+...|.|+|.||||||+.++.+.+.|.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4667899999999999999999999885

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.10  E-value=0.00029  Score=53.50  Aligned_cols=35  Identities=23%  Similarity=0.134  Sum_probs=30.3

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -+......+...|.|+|-||||||+.++.+.+.|.
T Consensus        15 ~r~~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          15 ERTELRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45567778899999999999999999999988764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.10  E-value=0.0006  Score=51.55  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             HHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         65 ARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        65 ~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+.+...++.-|-  -+.+.++.++...+...++|+|++|+|||++++.+.+.+.
T Consensus        15 ~~ky~P~~~~diig~~--~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          15 VEKYRPQRLDDIVGQE--HIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHTCCCSTTTCCSCH--HHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHccCcH--HHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            4667766666665442  2334566777777888899999999999999999998765

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.05  E-value=0.00016  Score=51.60  Aligned_cols=26  Identities=23%  Similarity=0.397  Sum_probs=23.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.|+|+|.+|||||+.++.+.+.|.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00019  Score=51.13  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.++.++++|.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999987

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00025  Score=50.71  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+.|+|+|.+|||||+.++.+.+.+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567889999999999999999999774

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00017  Score=50.60  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|+|.+|||||+.+|.+-+.|-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            599999999999999999998764

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00015  Score=52.94  Aligned_cols=27  Identities=22%  Similarity=0.403  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|+|+|.+|||||+.++.+-+.|-
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.94  E-value=0.00025  Score=49.89  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.|+++|.+|||||+.++.+++..
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            3579999999999999999887643

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.89  E-value=0.00023  Score=52.49  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+++.|++.|.+|||||+.++.+.+.+-
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45788999999999999999999998764

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00029  Score=50.33  Aligned_cols=28  Identities=14%  Similarity=0.176  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .....|+|+|.+|+|||+.++.+.+.+-
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4667899999999999999999998764

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.87  E-value=0.00028  Score=50.25  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|+|+|.+|||||+.++.+.+-+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            489999999999999999988654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.84  E-value=0.0003  Score=50.65  Aligned_cols=23  Identities=39%  Similarity=0.618  Sum_probs=22.0

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|.|++|+|||+.++.++..+.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            89999999999999999999887

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.79  E-value=0.0004  Score=49.75  Aligned_cols=26  Identities=19%  Similarity=0.487  Sum_probs=23.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |..|+|.|.+|||||+.++.+.+.|.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999999886

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00033  Score=49.96  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=23.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|+|+|++|+|||+.++.+++.|.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4699999999999999999999987

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.66  E-value=0.00041  Score=49.07  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.2

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..|+|+|.+|||||+.++.+.+.+-
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.0011  Score=49.86  Aligned_cols=55  Identities=15%  Similarity=0.155  Sum_probs=38.6

Q ss_pred             HHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         66 RAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        66 ~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|+.+...++.=|=  -+.+.++.++...+...++|+|.+|+|||+.++.+.+.+.
T Consensus         4 ~ky~P~~~~diig~~--~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2           4 EKYRPKNLDEVTAQD--HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             HHTCCSSTTTCCSCC--TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhhCCCCHHHccCcH--HHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHHc
Confidence            456555555543111  1134566677777767799999999999999999999874

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.58  E-value=0.0006  Score=49.34  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=22.9

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.|++.|.+|||||+.++.+-+.|-
T Consensus         2 ~~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           2 TEPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            36699999999999999999988765

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.52  E-value=0.00059  Score=48.68  Aligned_cols=23  Identities=35%  Similarity=0.627  Sum_probs=20.8

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+|+|.+|||||+.++.+-+.+
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            49999999999999999998865

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.44  E-value=0.00098  Score=48.94  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-|+++|-+|||||+.++.+.+++.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45689999999999999999999886

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.36  E-value=0.00082  Score=48.72  Aligned_cols=24  Identities=29%  Similarity=0.301  Sum_probs=21.5

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|-|+|.+|||||+.++.+.+.+.
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            355999999999999999999877

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.00096  Score=49.43  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |||+|.||||||+.++.+++.+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0025  Score=47.79  Aligned_cols=56  Identities=16%  Similarity=0.168  Sum_probs=37.2

Q ss_pred             HHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         65 ARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        65 ~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+|+.+...++--|-  -..+.++.+........++|.|.+|+|||+.++.+.+-+.
T Consensus         6 ~eKyrP~~~~d~ig~~--~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2           6 VEKYRPQVLSDIVGNK--ETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             HHHTCCSSGGGCCSCT--HHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhHhCCCCHHHhcCCH--HHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            3456655544433221  1123455556666666799999999999999999998766

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.31  E-value=0.00085  Score=47.77  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..+.|+|.|.+|||||+.++.+.+-+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999887754

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.30  E-value=0.0011  Score=47.67  Aligned_cols=23  Identities=30%  Similarity=0.362  Sum_probs=21.3

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|.|.+|||||+.+|.+-+.|-
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            88999999999999999988775

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.27  E-value=0.00099  Score=47.81  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=22.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|||.|.+|||||+.++.+.+.|.
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999886

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.26  E-value=0.0012  Score=48.28  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-|+|+|.|||||++.++.+++.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5699999999999999999988654

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0011  Score=48.74  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=21.1

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |||+|.||||||+.++.+++.+.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            89999999999999999988754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.20  E-value=0.0016  Score=46.69  Aligned_cols=25  Identities=28%  Similarity=0.122  Sum_probs=22.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.|.++|-+|||||+....++++|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3577999999999999999999998

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.00099  Score=48.74  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .+++.|+++|-+|||||+.++.+++-
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            46789999999999999999877653

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.14  E-value=0.0013  Score=48.14  Aligned_cols=26  Identities=19%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-.|+|.|.+|||||+.++.+.+.+-
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            45699999999999999999988775

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.0016  Score=46.97  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|.|.+||||||.++.+.+.+-
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            89999999999999999988764

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.11  E-value=0.0015  Score=48.03  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-..|+|.|.+|||||+.++.+.+++-
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            446799999999999999999999764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0048  Score=46.94  Aligned_cols=55  Identities=18%  Similarity=0.173  Sum_probs=36.5

Q ss_pred             HHHhcCCCCCCCchHHHhHHHHHHHHHh-hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         66 RAYRTRGPFQLPPHIFAIAGSAYRWLRD-RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        66 ~~y~~~~~~~~~PHi~~~a~~a~~~~~~-~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|+.+...++.=|- .+. +.+..... .+-+++++|.|++|+|||+.++.+.+.+.
T Consensus         4 ~KyrP~~~~dlig~~-~~~-~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_           4 RKWRPQTFADVVGQE-HVL-TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             HHTCCSSGGGSCSCH-HHH-HHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hhhCCCCHHHccChH-HHH-HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhc
Confidence            456655544443221 222 23344333 45578899999999999999999999887

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.09  E-value=0.0016  Score=46.64  Aligned_cols=23  Identities=22%  Similarity=0.378  Sum_probs=20.6

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |||.|.+|+|||+.++.+-+.|-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            77889999999999999988765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.00089  Score=52.08  Aligned_cols=27  Identities=30%  Similarity=0.519  Sum_probs=25.0

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.|.|.|+||||||+..+.++.++.
T Consensus        28 ~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1          28 QGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            678999999999999999999999876

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0015  Score=47.99  Aligned_cols=24  Identities=13%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .-|||+|.||+||++..+.+++-.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            459999999999999999998643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0041  Score=46.45  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.++.+....+-..++|.|.+|+|||+.++.+.+.+.
T Consensus        24 ~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          24 TTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             HHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHhh
Confidence            4455555666666799999999999999999998765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.99  E-value=0.0019  Score=46.79  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            389999999999999999998875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.97  E-value=0.0011  Score=51.94  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+.++.++.++.
T Consensus        39 ~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          39 PAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             CTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            4778999999999999999999998766

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.97  E-value=0.0011  Score=51.48  Aligned_cols=28  Identities=29%  Similarity=0.454  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.++.++.
T Consensus        26 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   53 (242)
T d1mv5a_          26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ   53 (242)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            4678999999999999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.93  E-value=0.0027  Score=47.94  Aligned_cols=28  Identities=18%  Similarity=0.178  Sum_probs=25.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+++|.|++|+|||+.++.+.+.+.
T Consensus        41 ~~~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          41 HHYPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence            4567899999999999999999999875

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.91  E-value=0.0055  Score=46.37  Aligned_cols=45  Identities=22%  Similarity=0.094  Sum_probs=32.1

Q ss_pred             chHHHhHHHHHHHHHhhCCCe----EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         78 PHIFAIAGSAYRWLRDRSEDQ----CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        78 PHi~~~a~~a~~~~~~~~~~Q----~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+=.+++-..+.+.....+.    .+++.|.+|+|||.+++.+.+.|.
T Consensus        23 ~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          23 GEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHH
Confidence            334555655555565544443    356789999999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0013  Score=51.42  Aligned_cols=28  Identities=21%  Similarity=0.406  Sum_probs=25.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.++.++.
T Consensus        38 ~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          38 RPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            4778999999999999999999998765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.0035  Score=47.23  Aligned_cols=29  Identities=21%  Similarity=0.329  Sum_probs=25.1

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++++|+|.+|+|||+.++.+.+.+-
T Consensus        32 ~~~~~~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          32 GEVLDHVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             TCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHhccC
Confidence            34457899999999999999999998766

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.84  E-value=0.0024  Score=46.31  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=21.3

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|.|.+|||||+.++.+.+.+-
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            88999999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0032  Score=45.92  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=22.0

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -.|+|.|.+||||||.++.+.+.+-
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4589999999999999999988654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.0029  Score=47.60  Aligned_cols=25  Identities=28%  Similarity=0.319  Sum_probs=21.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..-|||+|.||+||++..+.+++-.
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            3469999999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.0024  Score=46.14  Aligned_cols=24  Identities=25%  Similarity=0.300  Sum_probs=21.2

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|++.|.+|||||+.++.+.+.+-
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388999999999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0084  Score=44.78  Aligned_cols=31  Identities=6%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             HhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         92 RDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        92 ~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+-+.+++|.|+.|+|||+.++.+.+.|.
T Consensus        19 ~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          19 QAGRGHHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             HTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HcCCcCeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            3445688999999999999999999999886

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.73  E-value=0.0057  Score=48.62  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=24.5

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+|+|.|.+|+|||+.+|.+.+.+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            568899999999999999999999765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0032  Score=46.74  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=21.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|+|.+||||||.++.+.+.|.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            467999999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.70  E-value=0.003  Score=50.91  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=27.1

Q ss_pred             HHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         87 AYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        87 a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++.+.+.+.+  |+++|.+|||||+..+.+++++.
T Consensus       158 ~l~~~v~~~~n--ili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         158 AIKDGIAIGKN--VIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHHHHHTCC--EEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHHHHHhCCC--EEEEeeccccchHHHHHHhhhcc
Confidence            34555565665  99999999999999999888765

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.69  E-value=0.0024  Score=46.89  Aligned_cols=28  Identities=29%  Similarity=0.402  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++...|+|.|.+|||||+.++.+.+.+-
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4667899999999999999999988654

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.56  E-value=0.0036  Score=45.62  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|||.|.+|||||+.++.+.+.+-
T Consensus         5 riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           5 RAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            477899999999999999988765

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.48  E-value=0.0038  Score=48.07  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.+...+.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTLl~~i~gl~~   56 (230)
T d1l2ta_          29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK   56 (230)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCcchhhHhccCCCC
Confidence            3678899999999999999887766544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.44  E-value=0.0042  Score=48.08  Aligned_cols=28  Identities=25%  Similarity=0.462  Sum_probs=25.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..|.+...+.
T Consensus        30 ~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          30 KDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            3678999999999999999999988765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.43  E-value=0.0043  Score=46.02  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=21.3

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|.|.+|||||+.++.+.+.|-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999999775

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0026  Score=50.32  Aligned_cols=28  Identities=21%  Similarity=0.445  Sum_probs=25.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|+||||||+..+.|+..+.
T Consensus        60 ~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          60 EKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4778999999999999999999998765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.39  E-value=0.0081  Score=49.07  Aligned_cols=26  Identities=31%  Similarity=0.473  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..-.|++.|.||.||||++|.+-+++
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhc
Confidence            45679999999999999999998875

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.37  E-value=0.005  Score=46.69  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|+|.|.+|+|||+.++.+.+.+-
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            445799999999999999999988664

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.34  E-value=0.0016  Score=51.00  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+.|.|+||||||+..+.+..++.
T Consensus        42 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          42 EKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             CTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            4778999999999999999999888665

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.31  E-value=0.0043  Score=48.06  Aligned_cols=27  Identities=30%  Similarity=0.485  Sum_probs=23.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+.+.+.|+||||||+..|.+...+.
T Consensus        28 ~Ge~~~liG~sGaGKSTll~~i~gl~~   54 (240)
T d1g2912          28 DGEFMILLGPSGCGKTTTLRMIAGLEE   54 (240)
T ss_dssp             TTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred             CCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            678899999999999999999887655

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.30  E-value=0.0051  Score=47.41  Aligned_cols=28  Identities=25%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+...+.
T Consensus        24 ~~Gei~~liGpsGsGKSTLl~~i~Gl~~   51 (232)
T d2awna2          24 HEGEFVVFVGPSGCGKSTLLRMIAGLET   51 (232)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            3678999999999999999998887655

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.0054  Score=45.10  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|.|.|.+||||++.++.+.+.+-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999999765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=95.27  E-value=0.0041  Score=48.16  Aligned_cols=27  Identities=30%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...+.|.|+||||||+..+.+...+.
T Consensus        30 ~Ge~~~iiG~sGsGKSTLl~~i~Gl~~   56 (240)
T d3dhwc1          30 AGQIYGVIGASGAGKSTLIRCVNLLER   56 (240)
T ss_dssp             SSCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHcCCcc
Confidence            667899999999999999998887654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.23  E-value=0.0059  Score=46.10  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ....++|.|.+|+|||++++.+.+.+-
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999765

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.21  E-value=0.0025  Score=47.85  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++|||||+..+.+..++.
T Consensus        25 ~~Gei~~l~G~NGsGKSTLl~~i~gl~~   52 (200)
T d1sgwa_          25 EKGNVVNFHGPNGIGKTTLLKTISTYLK   52 (200)
T ss_dssp             ETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcccc
Confidence            3678899999999999999999988765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.20  E-value=0.0056  Score=44.30  Aligned_cols=24  Identities=21%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|++.|..|||||+.++.+.+.+-
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            488899999999999999988653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.09  E-value=0.0051  Score=45.50  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ..+.|+|+|+||+|||+++-.+++
T Consensus        14 ~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          14 FGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            568899999999999999877665

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.07  E-value=0.0075  Score=45.29  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...++|++.|++|+|||..++.+++-+.
T Consensus        27 ~~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          27 LRAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             TCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             ccCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            3568999999999999999998887553

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.07  E-value=0.0038  Score=45.56  Aligned_cols=29  Identities=21%  Similarity=0.339  Sum_probs=24.8

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++-.|+|.|-.|||||+.++.+-+++-
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566899999999999999999988774

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.05  E-value=0.0065  Score=44.56  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=20.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ..+.|+|+|+||+|||+.+-.+++
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l~~   37 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALELIK   37 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            578999999999999998866665

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=95.03  E-value=0.0065  Score=45.28  Aligned_cols=24  Identities=25%  Similarity=0.468  Sum_probs=21.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+++|..|||||+..+.+++++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            378999999999999999999875

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.02  E-value=0.0076  Score=44.48  Aligned_cols=24  Identities=29%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ....|+|+|+||+|||+.+-.+++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999998877665

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.01  E-value=0.0055  Score=45.11  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|.|.+|||||+.++.+.+.+-
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHC
Confidence            488899999999999999988653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.97  E-value=0.017  Score=43.30  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|++|+|||+.++.+.+.+.
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhc
Confidence            3499999999999999999988776

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.96  E-value=0.0067  Score=47.35  Aligned_cols=28  Identities=25%  Similarity=0.402  Sum_probs=24.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+.+.|.|+||||||+..+.|...+.
T Consensus        26 ~~GEi~~iiG~sGsGKSTLl~~i~Gl~~   53 (258)
T d1b0ua_          26 RAGDVISIIGSSGSGKSTFLRCINFLEK   53 (258)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHcCcc
Confidence            4778999999999999999999987654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=94.87  E-value=0.0055  Score=47.10  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+...+.
T Consensus        24 ~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2          24 ESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             CTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            4678899999999999999999988765

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.84  E-value=0.014  Score=43.41  Aligned_cols=35  Identities=17%  Similarity=0.285  Sum_probs=31.9

Q ss_pred             HHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         88 YRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        88 ~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++..++...++++.|++|+|||+.++.+.+++.
T Consensus         6 l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2           6 LKRIIEKSEGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             HHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            46778888999999999999999999999999886

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.81  E-value=0.008  Score=45.23  Aligned_cols=27  Identities=19%  Similarity=0.314  Sum_probs=23.8

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++|.|..|+|||+.++.+.+.+.
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHHHS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhc
Confidence            455699999999999999999999874

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.71  E-value=0.0051  Score=47.69  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|+||||||+..+.+...+.
T Consensus        29 ~~Ge~~~iiG~sGsGKSTll~~i~gl~~   56 (242)
T d1oxxk2          29 ENGERFGILGPSGAGKTTFMRIIAGLDV   56 (242)
T ss_dssp             CTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHcCcC
Confidence            4678999999999999999999988765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.71  E-value=0.012  Score=44.49  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=24.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|.+.|.+|+|||+++-++-.++.
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~   31 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ   31 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567899999999999998888888776

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.64  E-value=0.021  Score=43.81  Aligned_cols=46  Identities=15%  Similarity=0.116  Sum_probs=30.4

Q ss_pred             CchHHHhHHHHHHHH--HhhC---CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         77 PPHIFAIAGSAYRWL--RDRS---EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        77 ~PHi~~~a~~a~~~~--~~~~---~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|+-.+.+++-...  .+..   ...+|+|.|++|+|||..++.+.+.+-
T Consensus        15 ~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          15 GDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            355555555443222  1221   234799999999999999999988644

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=94.49  E-value=0.013  Score=39.56  Aligned_cols=28  Identities=18%  Similarity=0.221  Sum_probs=21.7

Q ss_pred             CCCeEEEecCCCCCchhHHH-HHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAA-SMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~-k~il~~l~  122 (186)
                      +++|..++.+++|||||+.+ ..++++..
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~~   33 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAECA   33 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHhh
Confidence            46788999999999999766 45555555

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=94.44  E-value=0.015  Score=44.04  Aligned_cols=28  Identities=25%  Similarity=0.411  Sum_probs=23.5

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|++.|.+|+|||+++-++-.++.
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3566789999999999998878777776

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.43  E-value=0.012  Score=43.09  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      |+|.|--||||||.++.+.++|.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            88999999999999999999986

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=94.37  E-value=0.013  Score=43.97  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...++|.|.+|.|||+.++.+.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999998765

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.26  E-value=0.011  Score=45.58  Aligned_cols=25  Identities=16%  Similarity=0.396  Sum_probs=22.1

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++|.|+||||||+..|.+...+.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~~   49 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEECCCCChHHHHHHHHHcCCC
Confidence            4677899999999999999998765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=94.26  E-value=0.0094  Score=43.28  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=18.6

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      -|.++|.+|||||+.++.+-++
T Consensus         5 IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
Confidence            4668999999999999887664

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.014  Score=44.23  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=23.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+..|++.|.+|+|||+++-++-.++.
T Consensus         7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           7 KAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567788999999999998888877766

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.21  E-value=0.012  Score=45.07  Aligned_cols=25  Identities=16%  Similarity=0.303  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ++.+.+.+.|++|||||+..+.+..
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhC
Confidence            4788999999999999999888876

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.18  E-value=0.02  Score=47.92  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.-|++.|+||+|||+.+|.+-+.+-
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC
Confidence            34699999999999999999999663

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.017  Score=41.19  Aligned_cols=28  Identities=21%  Similarity=0.168  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.++|.|++|+|||..+-.++-..+
T Consensus        21 ~~G~v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          21 ETGSITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cCCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999998776665433

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.93  E-value=0.031  Score=45.86  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.2

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...=.|+++|.+|||||++...+++++.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4445688999999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=93.91  E-value=0.019  Score=43.42  Aligned_cols=28  Identities=29%  Similarity=0.516  Sum_probs=19.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+..|++.|.+|+|||+++-++-.++.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3566788899999999998877777766

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.91  E-value=0.014  Score=46.32  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=20.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-.|-++|-||||||+.++.+.+.|.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~   29 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFR   29 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHh
Confidence            34789999999999999999988876

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=93.89  E-value=0.014  Score=44.86  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=24.9

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.|.|++||||||..+.+...+.
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~~   57 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLVR   57 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            3678999999999999999999988765

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.019  Score=45.87  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+=.|.|+|.||||||+.++.+...|.
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~  105 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence            344788999999999999999999886

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.015  Score=43.57  Aligned_cols=26  Identities=12%  Similarity=0.222  Sum_probs=24.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++-|+|-|.-|||||+.++.+.++|.
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~   27 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHh
Confidence            67899999999999999999999886

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=93.85  E-value=0.017  Score=39.84  Aligned_cols=21  Identities=24%  Similarity=0.290  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|++|+|||+..+.+..
T Consensus         2 kivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            389999999999999888764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.84  E-value=0.039  Score=42.76  Aligned_cols=26  Identities=27%  Similarity=0.377  Sum_probs=22.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .....|.|.|..|.|||+.++.+.+.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHh
Confidence            34567889999999999999999875

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.72  E-value=0.026  Score=42.43  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=22.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...|++.|.+|+|||+++-++-.++.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345678899999999999888888877

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.71  E-value=0.024  Score=40.92  Aligned_cols=27  Identities=22%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-.|.+.|+=|||||+.+|.+++.|.
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            334678899999999999999999887

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.67  E-value=0.021  Score=42.03  Aligned_cols=26  Identities=35%  Similarity=0.576  Sum_probs=23.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..-|+|-|.-|||||+.++.+.++|.
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34699999999999999999999986

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.59  E-value=0.025  Score=42.18  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=23.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .-.|+|.|.-|||||+.++.+.++|.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999999987

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.51  E-value=0.018  Score=44.58  Aligned_cols=28  Identities=21%  Similarity=0.509  Sum_probs=24.7

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.+.+.|.|++|||||+..+.+...+.
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            3678899999999999999999988765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.44  E-value=0.028  Score=44.36  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=22.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +--|-|+|-+|||||+.++.+.++|.
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~   52 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLM   52 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHH
Confidence            34566899999999999999998885

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.21  E-value=0.033  Score=44.19  Aligned_cols=25  Identities=20%  Similarity=0.397  Sum_probs=22.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+++.|.+|+|||+.+|.+-+.+.
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCcchhHHHHHHHHhhcc
Confidence            4789999999999999999999875

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.07  E-value=0.035  Score=42.86  Aligned_cols=27  Identities=22%  Similarity=0.281  Sum_probs=24.1

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..|++.|.+|+|||..++.+.+.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            456799999999999999999998765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=93.00  E-value=0.028  Score=43.10  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.6

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.+.+.+.|++||||||..+.+...+.
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678899999999999999999888765

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.03  Score=41.46  Aligned_cols=26  Identities=23%  Similarity=0.138  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .+.+.+++.|++|+|||..+..++..
T Consensus        35 p~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          35 ESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            36788999999999999998877754

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.89  E-value=0.021  Score=42.03  Aligned_cols=24  Identities=21%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .+.+.++|.|++|+|||+.+-.++
T Consensus        32 ~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          32 ETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             ESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             cCCeEEEEEcCCCCCHHHHHHHHH
Confidence            377899999999999999766554

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.72  E-value=0.032  Score=39.47  Aligned_cols=21  Identities=19%  Similarity=0.393  Sum_probs=19.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      +|++.|.+|+|||+..+.++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999999998874

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.62  E-value=0.024  Score=41.84  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=17.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|.++|..|||||+.++.+-+
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999886644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.42  E-value=0.042  Score=43.64  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=22.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++++.|.+|+|||+.++.+-+.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~   78 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLF   78 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHhc
Confidence            688899999999999999999884

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.38  E-value=0.039  Score=42.31  Aligned_cols=27  Identities=30%  Similarity=0.361  Sum_probs=23.4

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+-.|++.|.+|+|||..++.+.+.+.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhC
Confidence            456799999999999999999888655

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.36  E-value=0.013  Score=43.64  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|+|-|..|||||+.++.+.++|-
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            599999999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=0.033  Score=41.16  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|.++|..|||||+.++.+-+
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            366999999999999986654

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.32  E-value=0.038  Score=41.04  Aligned_cols=27  Identities=37%  Similarity=0.422  Sum_probs=22.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.+.+++.|++|+|||+.+-.++...
T Consensus        34 p~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          34 ETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            377899999999999999886665543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=92.11  E-value=0.042  Score=37.85  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999887654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.09  E-value=0.041  Score=38.85  Aligned_cols=20  Identities=30%  Similarity=0.300  Sum_probs=18.0

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||+..+.++.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            89999999999999887765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.03  E-value=0.069  Score=41.57  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=26.5

Q ss_pred             HHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         91 LRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        91 ~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.++..+.+++.||+|.|||.....+.+-+.
T Consensus        33 iL~r~~k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          33 VLCRRRKNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             HHTSSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHhcCccCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            34555667899999999999999988888776

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=92.02  E-value=0.049  Score=40.38  Aligned_cols=27  Identities=33%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+++.|++|+|||..+..++...+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            667899999999999999988888765

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.98  E-value=0.045  Score=42.21  Aligned_cols=26  Identities=23%  Similarity=0.325  Sum_probs=22.5

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-.|++.|.+|+|||..++.+.+.+-
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhC
Confidence            44699999999999999999988654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=91.94  E-value=0.045  Score=41.92  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=22.4

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +-.|++.|.+|+|||..++.+.+.+-
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC
Confidence            34699999999999999999998654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.79  E-value=0.049  Score=39.84  Aligned_cols=28  Identities=25%  Similarity=0.238  Sum_probs=23.0

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...+.+++.|++|+|||+.+-.+.-.++
T Consensus        32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          32 ESQSVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3678999999999999998877765444

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.74  E-value=0.089  Score=42.56  Aligned_cols=27  Identities=22%  Similarity=0.331  Sum_probs=24.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ...++++.|.+|+|||..++.+.+++-
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            334999999999999999999999877

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.58  E-value=0.061  Score=40.88  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      +++..++.|.||.|||+..+.++.
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHST
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcc
Confidence            678899999999999999888764

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.50  E-value=0.071  Score=42.34  Aligned_cols=36  Identities=19%  Similarity=0.195  Sum_probs=26.8

Q ss_pred             hHHH-hHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFA-IAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~-~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .+|. ++.......+..+.+-+|+..|.+|||||.+.
T Consensus        66 ~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          66 TVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             HHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceee
Confidence            4453 33444455566789999999999999999986

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.46  E-value=0.053  Score=38.10  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=18.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...++++.
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999887664

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.32  E-value=0.058  Score=36.71  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+....++.
T Consensus         2 KI~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999888765

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.17  E-value=0.064  Score=39.82  Aligned_cols=26  Identities=19%  Similarity=0.372  Sum_probs=23.3

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .--|+|.|.-|||||+.++.+.++|.
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            34699999999999999999999885

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.17  E-value=0.051  Score=38.93  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      -|++.|++|+|||...+++ ++..
T Consensus         4 KivllG~~~vGKTsll~r~-~f~~   26 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM-RIIH   26 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH-HHHH
T ss_pred             EEEEECCCCCCHHHHHHHH-hcCC
Confidence            3899999999999999887 5544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.12  E-value=0.061  Score=37.64  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||...+++++
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999887664

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=91.09  E-value=0.086  Score=40.00  Aligned_cols=28  Identities=21%  Similarity=0.261  Sum_probs=23.8

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+.+++.|.+|+|||+.+..+...++
T Consensus        33 ~~G~l~vi~G~~G~GKT~~~~~la~~~a   60 (277)
T d1cr2a_          33 RGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (277)
T ss_dssp             CTTCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHhhh
Confidence            5779999999999999998877776655

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.08  E-value=0.14  Score=39.05  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=29.4

Q ss_pred             CCCchHHHhHHHHHHHHHhhC-CCeEEEecCCCCCchhHHHHHHHHH
Q psy18111         75 QLPPHIFAIAGSAYRWLRDRS-EDQCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        75 ~~~PHi~~~a~~a~~~~~~~~-~~Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      ++|++.-.--.+-...+.... ..-.|++.|.+|+|||+....|+..
T Consensus         9 ~~~~~~~~~l~e~~~~l~~~~~~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_           9 TFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             hhhHHHHHHHHHHHHHHhhcCCCCcEEEEECCCCCcHHHHHHHHhCC
Confidence            344444433333334444332 3347999999999999999988863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.98  E-value=0.063  Score=37.61  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=18.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...++++.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999877654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.049  Score=44.13  Aligned_cols=28  Identities=25%  Similarity=0.445  Sum_probs=23.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.+++.|.||||||+..+.++..+.
T Consensus        48 ~~~~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          48 AEPRHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GGGGCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             cccceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            3566799999999999999888777666

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.93  E-value=0.065  Score=37.35  Aligned_cols=20  Identities=40%  Similarity=0.403  Sum_probs=17.9

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...++++.
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999887765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.067  Score=37.85  Aligned_cols=20  Identities=25%  Similarity=0.363  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||...++++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            88999999999999887664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.87  E-value=0.056  Score=38.70  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=17.5

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||...+.+++
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999876665

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.057  Score=38.10  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+.++.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999999887765

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.068  Score=37.62  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|++|+|||.....++.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999887764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.77  E-value=0.069  Score=37.43  Aligned_cols=20  Identities=25%  Similarity=0.348  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...++++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999887764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.68  E-value=0.069  Score=38.09  Aligned_cols=20  Identities=40%  Similarity=0.610  Sum_probs=17.8

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||+..+.++.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999887764

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.16  Score=37.55  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.++....+++.||+|.|||.....+.+-+.
T Consensus        36 ~iL~r~~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          36 QVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             HHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHhccCCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            344445556799999999999999988888777

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.062  Score=37.69  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=18.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|++|+|||...+.++.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999887765

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.61  E-value=0.072  Score=37.63  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|++|+|||...++++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999877664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.08  Score=38.41  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999888775

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.067  Score=37.71  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...+.+++
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999998887664

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.39  E-value=0.077  Score=37.48  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=17.9

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||....++++
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999877765

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.14  Score=40.23  Aligned_cols=41  Identities=15%  Similarity=0.101  Sum_probs=35.7

Q ss_pred             HhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+.-++.-.|.--.+.|.+.|.|.+|+|||+.+..+.+...
T Consensus        28 ~~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          28 DLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             HHHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            34457888888889999999999999999999999999776

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.069  Score=37.24  Aligned_cols=20  Identities=30%  Similarity=0.559  Sum_probs=17.8

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|++|+|||...++++.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999888764

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=90.26  E-value=0.091  Score=35.59  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=17.3

Q ss_pred             CCCeEEEecCCCCCchhHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .+.|..++.+.+|||||+.+
T Consensus         6 ~~~~~~ll~apTGsGKT~~~   25 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKV   25 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHH
T ss_pred             cCCCEEEEEeCCCCCHHHHH
Confidence            36789999999999999864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.23  E-value=0.075  Score=37.66  Aligned_cols=21  Identities=14%  Similarity=0.294  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999888775

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.20  E-value=0.082  Score=37.05  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||...+++++
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999887765

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.19  E-value=0.081  Score=37.71  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=18.2

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+++++
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            489999999999998877665

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=90.11  E-value=0.068  Score=37.44  Aligned_cols=22  Identities=23%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      =.|++.|.+|+|||+...++..
T Consensus        16 ~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          16 HKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4699999999999999887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.01  E-value=0.081  Score=37.12  Aligned_cols=21  Identities=29%  Similarity=0.340  Sum_probs=17.3

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||+..+.++.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999998766553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.00  E-value=0.075  Score=37.15  Aligned_cols=20  Identities=35%  Similarity=0.476  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...+.++.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999887664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=89.99  E-value=0.088  Score=36.76  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=17.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            388999999999998776644

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=89.89  E-value=0.09  Score=37.03  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=17.8

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+.++.
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999998777654

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.85  E-value=0.098  Score=37.60  Aligned_cols=21  Identities=33%  Similarity=0.564  Sum_probs=18.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|+|.|.+|+|||+....++.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~   25 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTT   25 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            689999999999998877765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.75  E-value=0.094  Score=36.77  Aligned_cols=21  Identities=24%  Similarity=0.354  Sum_probs=17.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|++|+|||...++++.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999998776654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.076  Score=36.68  Aligned_cols=21  Identities=14%  Similarity=0.377  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|++|+|||+..+.++.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999998877764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.73  E-value=0.081  Score=37.01  Aligned_cols=21  Identities=24%  Similarity=0.215  Sum_probs=17.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+.++.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999998877654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.72  E-value=0.094  Score=36.84  Aligned_cols=20  Identities=40%  Similarity=0.581  Sum_probs=17.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||+..+.++.
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            88999999999999887654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.66  E-value=0.096  Score=39.92  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=21.3

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .+.-|+|.||.|+||+..++.|-++.
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            44459999999999999999886643

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.66  E-value=0.22  Score=34.12  Aligned_cols=28  Identities=7%  Similarity=0.092  Sum_probs=24.4

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ++.=+|+++|.|||||++.++.++.-|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            3445899999999999999999988887

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.097  Score=36.76  Aligned_cols=20  Identities=30%  Similarity=0.400  Sum_probs=17.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...+++++
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999998877655

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.64  E-value=0.07  Score=38.82  Aligned_cols=28  Identities=21%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHH
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASM  116 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~  116 (186)
                      +|+..+.   +++.+++.+++|+|||+.+-.
T Consensus        32 ~ai~~l~---~~~~~il~apTGsGKT~~a~l   59 (202)
T d2p6ra3          32 EAVEKVF---SGKNLLLAMPTAAGKTLLAEM   59 (202)
T ss_dssp             HHHHHHT---TCSCEEEECSSHHHHHHHHHH
T ss_pred             HHHHHHH---cCCCEEEEcCCCCchhHHHHH
Confidence            4444444   345699999999999988643

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.24  Score=39.35  Aligned_cols=41  Identities=15%  Similarity=0.161  Sum_probs=31.7

Q ss_pred             HhHHHHHHHHH-hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         82 AIAGSAYRWLR-DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        82 ~~a~~a~~~~~-~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+....+. ..++.-.|-|+|..|+|||+....+++++.
T Consensus        38 ~~~~~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          38 ALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             HHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            34444454544 346788899999999999999999999887

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.55  E-value=0.085  Score=37.34  Aligned_cols=20  Identities=20%  Similarity=0.340  Sum_probs=16.9

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||.....++.
T Consensus         5 ivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999998766554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=89.48  E-value=0.089  Score=36.60  Aligned_cols=20  Identities=20%  Similarity=0.262  Sum_probs=17.0

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .|++.|.+|+|||+..+.+.
T Consensus         4 ki~ivG~~~~GKTsLi~~l~   23 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFN   23 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            48999999999999877653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=89.44  E-value=0.032  Score=42.70  Aligned_cols=29  Identities=21%  Similarity=0.363  Sum_probs=22.4

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      ..-++++.+|.|.||.|||+..+.++.-.
T Consensus        93 ~~l~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          93 PHFQDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             GGGTTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             HhhccceEEEECCCCccHHHHHHhhccHh
Confidence            33367788999999999999988877643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=89.36  E-value=0.12  Score=37.32  Aligned_cols=24  Identities=38%  Similarity=0.556  Sum_probs=19.9

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHH
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ....++|.|++|+|||..+..++-
T Consensus        25 ~G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          25 IGRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHH
Confidence            667899999999999998766543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.089  Score=37.19  Aligned_cols=21  Identities=24%  Similarity=0.422  Sum_probs=17.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+.++.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999998776554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.30  E-value=0.098  Score=37.24  Aligned_cols=19  Identities=32%  Similarity=0.436  Sum_probs=16.9

Q ss_pred             EEecCCCCCchhHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVV  118 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il  118 (186)
                      |++.|.+|+|||+..+.++
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            8899999999999887765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.27  E-value=0.091  Score=37.29  Aligned_cols=21  Identities=19%  Similarity=0.271  Sum_probs=18.1

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -||+.|.+|+|||...+++..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999887754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.25  E-value=0.11  Score=36.38  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.8

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...++++.
T Consensus         5 KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            389999999999998777654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.091  Score=37.63  Aligned_cols=20  Identities=25%  Similarity=0.267  Sum_probs=16.8

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...+++++
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            89999999999998766553

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.20  E-value=0.13  Score=35.67  Aligned_cols=25  Identities=20%  Similarity=0.248  Sum_probs=20.1

Q ss_pred             CCCeEEEecCCCCCchhHHHHHHHH
Q psy18111         95 SEDQCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      ++.=.|++.|.+|+|||+....+..
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4455799999999999999776643

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.17  E-value=0.11  Score=36.51  Aligned_cols=21  Identities=19%  Similarity=0.327  Sum_probs=17.7

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||...+.++.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999998776654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.16  E-value=0.091  Score=36.86  Aligned_cols=20  Identities=20%  Similarity=0.336  Sum_probs=18.4

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |+|.|.+|+|||+..+.+.+
T Consensus         8 I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           8 IAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEECSSSSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999975

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.10  E-value=0.096  Score=36.87  Aligned_cols=20  Identities=25%  Similarity=0.466  Sum_probs=17.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...++++.
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999998877654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.07  E-value=0.11  Score=36.61  Aligned_cols=20  Identities=30%  Similarity=0.529  Sum_probs=17.7

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||+..++++.
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999999877654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.04  E-value=0.096  Score=37.79  Aligned_cols=20  Identities=25%  Similarity=0.333  Sum_probs=17.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|+.|+|||+..+.++.
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            88999999999998877764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.01  E-value=0.088  Score=39.40  Aligned_cols=22  Identities=23%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .++++|--|||||+..+++++.
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4789999999999988888774

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.2  Score=39.48  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             hCCCeEEEecCCCCCchhHHH
Q psy18111         94 RSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .+.+-+|+..|.+|||||.+.
T Consensus        73 ~G~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          73 EGYNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             TTCCEEEEEECSTTSSHHHHH
T ss_pred             cCCCcceeeecccCCCCceec
Confidence            578999999999999999986

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.98  E-value=0.099  Score=36.84  Aligned_cols=21  Identities=29%  Similarity=0.332  Sum_probs=18.8

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|+|.|.+|+|||+....++.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999888765

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.96  E-value=0.11  Score=36.54  Aligned_cols=19  Identities=26%  Similarity=0.520  Sum_probs=16.2

Q ss_pred             EEecCCCCCchhHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVV  118 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il  118 (186)
                      |++.|.+|+|||...+.+.
T Consensus         4 i~lvG~~~vGKTsLi~~~~   22 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFG   22 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7899999999999876654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.75  E-value=0.11  Score=38.53  Aligned_cols=20  Identities=20%  Similarity=0.401  Sum_probs=17.5

Q ss_pred             eEEEecCCCCCchhHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMV  117 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~i  117 (186)
                      --|++.|.+|+|||...+++
T Consensus         7 ~KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46999999999999988775

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.72  E-value=0.12  Score=36.49  Aligned_cols=20  Identities=35%  Similarity=0.479  Sum_probs=17.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||...+.++.
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            89999999999998887654

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=88.68  E-value=0.14  Score=38.04  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             eEEEecCCCCCchhHHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~~  120 (186)
                      +-|.|+|.-|||||+.++.+.+-
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            35889999999999999988653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.66  E-value=0.049  Score=38.21  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=18.7

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+|.|+.|||||+....|.-.|.
T Consensus        27 tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999888775444

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=88.55  E-value=0.11  Score=37.29  Aligned_cols=21  Identities=24%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.+..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHhcC
Confidence            499999999999999998873

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.49  E-value=0.23  Score=35.49  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=17.9

Q ss_pred             EEecCCCCCchhHHHHHHHHHHh
Q psy18111        100 IIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++++.+|+|||..+-.++.+..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~   48 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRL   48 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHH
Confidence            56779999999997776666554

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=88.15  E-value=0.091  Score=37.29  Aligned_cols=29  Identities=24%  Similarity=0.307  Sum_probs=21.5

Q ss_pred             HHHhhCCCeEEEecCCCCCchhHHHHHHH
Q psy18111         90 WLRDRSEDQCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        90 ~~~~~~~~Q~IilsGeSGsGKt~~~k~il  118 (186)
                      .++..++.=.|++.|.+|+|||+..+++.
T Consensus        10 ~l~~~~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          10 KLWGSNKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             GGTTCSSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             HHhCCCceEEEEEECCCCCCHHHHHHHHh
Confidence            34444555579999999999999876653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.08  E-value=0.14  Score=36.02  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|..|+|||...+++..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999998876543

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.96  E-value=0.12  Score=36.99  Aligned_cols=21  Identities=24%  Similarity=0.194  Sum_probs=17.5

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      -|++.|.+|+|||....+++.
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999998766554

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=0.14  Score=36.05  Aligned_cols=19  Identities=32%  Similarity=0.672  Sum_probs=16.8

Q ss_pred             EEecCCCCCchhHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVV  118 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il  118 (186)
                      |++.|.+|+|||...+++.
T Consensus         6 v~lvG~~~vGKTsLi~~~~   24 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFA   24 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8999999999999887654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=87.31  E-value=0.13  Score=36.07  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=17.2

Q ss_pred             EEEecCCCCCchhHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il  118 (186)
                      .|++.|.+|+|||+..+.+.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            59999999999999877653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=87.10  E-value=0.16  Score=35.78  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||+..+.++.
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            488999999999999888764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.08  E-value=0.093  Score=37.04  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=8.6

Q ss_pred             EEecCCCCCchhHHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il~  119 (186)
                      |++.|.+|+|||.....++.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999876664

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=86.91  E-value=0.29  Score=38.98  Aligned_cols=35  Identities=17%  Similarity=0.291  Sum_probs=24.6

Q ss_pred             hHHH-hHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFA-IAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~-~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||. ++......++ .+.+-+|+..|.+|||||.+.
T Consensus        62 ~vy~~~~~plv~~~l-~G~n~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          62 DIFDFSIKPTVDDIL-NGYNGTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             HHHHHHTHHHHHHHT-TTCCEEEEEECSTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHhh-ccCceeEEecccCCCCcceee
Confidence            4553 3333333433 567899999999999999875

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=86.87  E-value=0.31  Score=38.71  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.7

Q ss_pred             hhCCCeEEEecCCCCCchhHHH
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      ..+.+.+|+..|.+|||||.+.
T Consensus        83 l~G~n~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          83 FEGYNVCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             HTTCCEEEEEECSTTSSHHHHH
T ss_pred             HhccCceeeeeccCCCCCceee
Confidence            4478899999999999999987

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=0.19  Score=35.71  Aligned_cols=21  Identities=24%  Similarity=0.265  Sum_probs=18.0

Q ss_pred             EEEecCCCCCchhHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~  119 (186)
                      .|++.|.+|+|||.....++.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999998876654

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.40  E-value=0.23  Score=39.90  Aligned_cols=35  Identities=29%  Similarity=0.469  Sum_probs=24.9

Q ss_pred             hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||.........++ .+.+-+|+..|.+|||||.+.
T Consensus       108 ~Vy~~v~plv~~vl-~G~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         108 DIFEMVSPLIQSAL-DGYNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             HHHTTTHHHHHHHH-TTCEEEEEEECSTTSSHHHHH
T ss_pred             chHHHHHHHHHHHh-cccceeEEeeccCCCccceEe
Confidence            44543333444444 578899999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.22  E-value=0.083  Score=36.42  Aligned_cols=22  Identities=14%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYF  120 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~  120 (186)
                      .|++.|.+|+|||+..+.+..-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3889999999999999988753

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=86.14  E-value=0.31  Score=38.61  Aligned_cols=35  Identities=17%  Similarity=0.237  Sum_probs=24.2

Q ss_pred             hHHHh-HHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFAI-AGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~~-a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||.- +......++ .+.+-+|+..|.+|||||.+.
T Consensus        63 ~vy~~~~~~lv~~~l-~G~n~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          63 DVYRSVVCPILDEVI-MGYNCTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             HHHHHHHHHHHHHHH-TTCEEEEEEEECTTSSHHHHH
T ss_pred             HHHHHHHHHhHHHHh-ccCCceEEeeeeccccceEEe
Confidence            45642 333333333 577889999999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=86.06  E-value=0.1  Score=36.78  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=17.8

Q ss_pred             eEEEecCCCCCchhHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVV  118 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il  118 (186)
                      =.|++.|.+|+|||+..+++.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            359999999999999887654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=85.80  E-value=0.15  Score=39.92  Aligned_cols=23  Identities=26%  Similarity=0.567  Sum_probs=21.1

Q ss_pred             EEEecCCCCCchhHHHHHHHHHH
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      .|+|.|..|+|||+.+|.+-.-|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            59999999999999999998865

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.74  E-value=0.48  Score=37.39  Aligned_cols=30  Identities=13%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..++.-.|-|+|..|+|||+....+++++.
T Consensus        47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          47 QTGRAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ccCCceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            445667799999999999999999998876

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.70  E-value=0.61  Score=35.14  Aligned_cols=61  Identities=18%  Similarity=0.201  Sum_probs=36.0

Q ss_pred             CHHHHHHHhcCCCCCCCchHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         61 SAELARAYRTRGPFQLPPHIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        61 ~~~~~~~y~~~~~~~~~PHi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+....+...-+-++.+---...+..... .....+..-++.|..|||||+..-..+....
T Consensus        41 ~~~~~~~~~~~lP~~lt~~Q~~~~~~i~~~-~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~  101 (233)
T d2eyqa3          41 DREQYQLFCDSFPFETTPDQAQAINAVLSD-MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV  101 (233)
T ss_dssp             CHHHHHHHHHTCCSCCCHHHHHHHHHHHHH-HHSSSCCEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred             CHHHHHhhhhccccccchhHHHHHHHHHHH-HhccCccCeEEEcCCCCCcHHHHHHHHHHHH
Confidence            455555555443333333333333333333 3445556788999999999998766666544

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=85.49  E-value=0.49  Score=35.17  Aligned_cols=37  Identities=19%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             HHHHHHHhh-CCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         86 SAYRWLRDR-SEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        86 ~a~~~~~~~-~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.+++. .+--||++.|..++|||..+..+++++.
T Consensus        41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            445555544 3446999999999999999999999986

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.90  E-value=0.26  Score=36.47  Aligned_cols=39  Identities=21%  Similarity=0.247  Sum_probs=25.9

Q ss_pred             HHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         81 FAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        81 ~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +.+=+.|...++   +.+++++.+.+|+|||+..-....++.
T Consensus        45 ~~~Q~~~i~~~l---~g~~~~i~apTGsGKT~~~~~~~~~~~   83 (237)
T d1gkub1          45 RAIQKMWAKRIL---RKESFAATAPTGVGKTSFGLAMSLFLA   83 (237)
T ss_dssp             CHHHHHHHHHHH---TTCCEECCCCBTSCSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH---CCCCEEEEecCCChHHHHHHHHHHHHH
Confidence            333344444444   345699999999999987766655544

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.86  E-value=0.11  Score=36.61  Aligned_cols=19  Identities=26%  Similarity=0.576  Sum_probs=16.1

Q ss_pred             EEecCCCCCchhHHHHHHH
Q psy18111        100 IIVSGESGSGKTQAASMVV  118 (186)
Q Consensus       100 IilsGeSGsGKt~~~k~il  118 (186)
                      |++.|.+|+|||...+.++
T Consensus         6 i~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            8899999999999876543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.69  E-value=0.31  Score=39.07  Aligned_cols=26  Identities=23%  Similarity=0.447  Sum_probs=22.6

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +...+|+|..|+|||++...++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHH
Confidence            45789999999999999988888776

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=84.32  E-value=0.3  Score=39.15  Aligned_cols=21  Identities=38%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             hCCCeEEEecCCCCCchhHHH
Q psy18111         94 RSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .+.+-+|+..|.+|||||.+.
T Consensus        72 ~G~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          72 DGYNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             TTCEEEEEEECSTTSSHHHHH
T ss_pred             cCCceeeeccccCCCCccccc
Confidence            467889999999999999985

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=84.24  E-value=0.33  Score=38.40  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=23.9

Q ss_pred             hHHHhHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFAIAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||.-.......++ .+.+.+|+..|.+|||||.+.
T Consensus        66 ~vy~~v~~~v~~~l-~G~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          66 DVFKEVGQLVQSSL-DGYNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             HHHHHHHHHHGGGG-GTCCEEEEEECCTTSSHHHHH
T ss_pred             HHHHHhhhhhcchh-cccccceeeeeccCCcccccc
Confidence            45543222333333 467999999999999999876

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=84.18  E-value=0.31  Score=37.42  Aligned_cols=27  Identities=22%  Similarity=0.231  Sum_probs=22.2

Q ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         96 EDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        96 ~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ..+.+.+.|++|+|||+.+-.++.-..
T Consensus        53 ~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          53 MGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            668899999999999998866666544

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=84.08  E-value=0.57  Score=35.21  Aligned_cols=26  Identities=23%  Similarity=0.284  Sum_probs=18.7

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      +..+++.|-.|||||+.+-..+.|+.
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHHHHHHHHH
Confidence            34467779999999987655555554

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=83.51  E-value=0.33  Score=38.89  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=24.9

Q ss_pred             hHHH-hHHHHHHHHHhhCCCeEEEecCCCCCchhHHH
Q psy18111         79 HIFA-IAGSAYRWLRDRSEDQCIIVSGESGSGKTQAA  114 (186)
Q Consensus        79 Hi~~-~a~~a~~~~~~~~~~Q~IilsGeSGsGKt~~~  114 (186)
                      .||. ++......++ .+.+-+|+..|.+|||||.+.
T Consensus        96 ~Vy~~~~~plv~~~l-~G~n~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_          96 VVYRFTARPLVQTIF-EGGKATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             HHHHHTTHHHHHHHH-TTCEEEEEEEESTTSSHHHHH
T ss_pred             HHHHHHHHHHHHHHH-hccCceEEeeccCCCCCceee
Confidence            4553 3444444444 467889999999999999876

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.14  Score=35.63  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=18.4

Q ss_pred             eEEEecCCCCCchhHHHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMVVY  119 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~il~  119 (186)
                      -.|+|.|.+++|||+..+.+..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3599999999999998877643

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=83.38  E-value=0.39  Score=35.89  Aligned_cols=26  Identities=23%  Similarity=0.201  Sum_probs=22.0

Q ss_pred             CeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         97 DQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        97 ~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+..+|.|++|+|||+.+-.+.-.++
T Consensus        29 g~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          29 GTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46889999999999999887776665

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=83.36  E-value=0.85  Score=34.05  Aligned_cols=29  Identities=34%  Similarity=0.533  Sum_probs=26.3

Q ss_pred             hCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         94 RSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        94 ~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      ......|+++|-=|.|||+++-.+-..|+
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA   45 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLA   45 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56778899999999999999999999888

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.54  E-value=0.43  Score=38.72  Aligned_cols=30  Identities=27%  Similarity=0.287  Sum_probs=23.0

Q ss_pred             hhCCCeEEEecCCCCCchhHHHHHHHHHHh
Q psy18111         93 DRSEDQCIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        93 ~~~~~Q~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .++....+++.||+|.|||.....+.+-+.
T Consensus        39 ~r~~k~n~llvG~~GvGKtaiv~~la~~i~   68 (387)
T d1qvra2          39 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIV   68 (387)
T ss_dssp             HCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hcCCCCCCeEECCCCCCHHHHHHHHHHHHH
Confidence            334444478889999999999888777766

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=81.07  E-value=0.43  Score=36.39  Aligned_cols=24  Identities=21%  Similarity=0.456  Sum_probs=16.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .+++.|-.|||||+.+-.-+-++.
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            377789999999986644444443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.58  E-value=0.33  Score=36.90  Aligned_cols=20  Identities=25%  Similarity=0.522  Sum_probs=16.6

Q ss_pred             eEEEecCCCCCchhHHHHHH
Q psy18111         98 QCIIVSGESGSGKTQAASMV  117 (186)
Q Consensus        98 Q~IilsGeSGsGKt~~~k~i  117 (186)
                      +--||.|+.|||||.....+
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            45689999999999987665

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=80.53  E-value=0.35  Score=38.52  Aligned_cols=24  Identities=21%  Similarity=0.315  Sum_probs=21.9

Q ss_pred             EEEecCCCCCchhHHHHHHHHHHh
Q psy18111         99 CIIVSGESGSGKTQAASMVVYFIA  122 (186)
Q Consensus        99 ~IilsGeSGsGKt~~~k~il~~l~  122 (186)
                      .|+|-|.-|+|||+.++.+.+++.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            489999999999999999999875

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.25  E-value=0.35  Score=36.57  Aligned_cols=19  Identities=26%  Similarity=0.427  Sum_probs=16.0

Q ss_pred             CCCeEEEecCCCCCchhHH
Q psy18111         95 SEDQCIIVSGESGSGKTQA  113 (186)
Q Consensus        95 ~~~Q~IilsGeSGsGKt~~  113 (186)
                      ++.|.+++.+.+|||||..
T Consensus         7 ~~~~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             STTCEEEECCCTTSSTTTT
T ss_pred             hcCCcEEEEECCCCCHHHH
Confidence            3567799999999999964

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.05  E-value=0.76  Score=33.26  Aligned_cols=33  Identities=24%  Similarity=0.174  Sum_probs=21.4

Q ss_pred             HHHHHHHhhCCCeEEEecCCCCCchhHHHHHHHHHH
Q psy18111         86 SAYRWLRDRSEDQCIIVSGESGSGKTQAASMVVYFI  121 (186)
Q Consensus        86 ~a~~~~~~~~~~Q~IilsGeSGsGKt~~~k~il~~l  121 (186)
                      +|...+.   +++..++..++|+|||..+-.++..+
T Consensus        77 eav~~~~---~~~~~ll~~~tG~GKT~~a~~~~~~~  109 (206)
T d2fz4a1          77 KALERWL---VDKRGCIVLPTGSGKTHVAMAAINEL  109 (206)
T ss_dssp             HHHHHHT---TTSEEEEEESSSTTHHHHHHHHHHHS
T ss_pred             HHHHHHH---hCCCcEEEeCCCCCceehHHhHHHHh
Confidence            4555443   23445677899999998776665543