Psyllid ID: psy18120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccccccccccccccccHHHHHHccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEccccccccccccEEEccccccccccccEEcccccccccEEEEEEcccccccccccHHHHHHHccccccHHHHHHHHHHHHHHccccccccccEEEccHHHHHHHcccccccccHHHHHcccccccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccccccccccccccccEEEEEEEEEcccccccccccccccccccccHccccccccccccccccccccccHHHHHcEEEEEEccccccccccEEEEEccccccccccEEEEccccccEEEEEEEEEccccccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccEcccHHHHHHHcccccccHHHHHHHHHHccccccEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
msqrfqgsqntnqaplrypppsgppmrygnqnmamqprpgftptppgprpggpgvppnqqppytgmrpsgpvnpniankrpsdarppnnlkndyqhgppgpgpikkKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISntfypakesgegeegsvaSWELRVEGrlledskndpnksgegeegsvaSWELRVEGrlledskndpnkvkRKFSSFFKSLVIELdkdlygpdnhlvewhrtpttqetdgfqvkrpgdknvrCTILLLLdyqplqfkldpRLARLlgvhtqtrPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIfscprmkfaeipqrlnpllhppdpiviNHIIRYLIIV
Flexible Loop (DISEMBL)
msqrfqgsqntnqaplryppPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIqealkrpmkqkrklriFISNtfypakesgegeegsvasWELRVEGrlledskndpnksgegeegsvaswELRVEGrlledskndpnkvkrKFSSFFKSLVIELDKDLYGPDNHLVEWhrtpttqetdgfqvkrpgdKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLnpllhppdpiviNHIIRYLIIV
Low Complexity Region (SEG)
MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQprpgftptppgprpggpgvppnqqppYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHgppgpgpikkkkkLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKesgegeegsVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVkrkfssffksLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Disordered region (IsUnstruct)
******************************************************************************************************************************QAYMDLLAFERKLDSTIMRKRLDIQ***********KLRIFISNTFY********************************************************************FSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLII*
Disordered Region (DISOPRED)
**********************************************************************************************************************VRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTF**********************************************************************************************************************CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Disordered Region (DISEMBL)
************QAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPA***********ASWELRVEGRLLED****************ASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Disordered Region (DISPRO)
*******************PPSGPPMRY*NQNMAMQPRPGFTPTPPG*RP**********************************************************KLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESG*GEEGSVASWELRVEGRLLED**************************************KRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYLIIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
Q96GM5	515	SWI/SNF-related matrix-as	yes	N/A	0.806	0.613	0.643	1e-120
Q2TBN1	515	SWI/SNF-related matrix-as	yes	N/A	0.806	0.613	0.654	1e-120
Q61466	515	SWI/SNF-related matrix-as	yes	N/A	0.806	0.613	0.640	1e-120
Q6P9Z1	483	SWI/SNF-related matrix-as	no	N/A	0.793	0.643	0.616	1e-114
Q6STE5	483	SWI/SNF-related matrix-as	no	N/A	0.793	0.643	0.616	1e-114
O54772	531	SWI/SNF-related matrix-as	no	N/A	0.867	0.640	0.545	1e-106
Q92925	531	SWI/SNF-related matrix-as	no	N/A	0.818	0.604	0.569	1e-106
Q99JR8	531	SWI/SNF-related matrix-as	no	N/A	0.867	0.640	0.543	1e-106
E1BJD1	531	SWI/SNF-related matrix-as	no	N/A	0.818	0.604	0.558	1e-105
Q9FMT4	534	SWI/SNF complex component	no	N/A	0.721	0.529	0.356	8e-47

>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/359 (64%), Positives = 253/359 (70%), Gaps = 43/359 (11%)

Query: 34  AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
           A  PRPG  P    TP GP  G PG    P+ +P   G+  SG              +  
Sbjct: 56  AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSGMDQSRKRPAPQQIQQVQ 112

Query: 88  NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
                +  H         KKKK+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR
Sbjct: 113 QQAVQNRNHNA-------KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR 165

Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
           LDIQEALKRP+KQKRKLRIFISNTF PAK   E  EG+VASWELRVEGRLLEDS      
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSAL---- 221

Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
                                  SK D  K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258

Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
           HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318

Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           LWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377

Involved in chromatin remodeling. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene.
Homo sapiens (taxid: 9606)

>sp|Q2TBN1|SMRD1_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 235/359 (65%), Positives = 259/359 (72%), Gaps = 43/359 (11%)

Query: 34  AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
           A  PRPG  P    TP GP  G PG    P+ +P   G+  SG    + + KRP+    P
Sbjct: 56  AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSG---MDQSLKRPA----P 105

Query: 88  NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
             +K   Q          KKKK+ADKILPQ++R+LVPESQ YMDLLAFERKLD TIMRKR
Sbjct: 106 QQIKQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQDYMDLLAFERKLDQTIMRKR 165

Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
           LDIQEALKRP+KQKRKLRIFISNTF PAK   E  EG+VASWELRVEGRLLEDS      
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSAL---- 221

Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
                                  SK D  K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258

Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
           HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318

Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           LWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Bos taurus (taxid: 9913)

>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3

 Score =  430 bits (1106), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/359 (64%), Positives = 253/359 (70%), Gaps = 43/359 (11%)

Query: 34  AMQPRPGFTP----TPPGPRPGGPGVP--PNQQPPYTGMRPSGPVNPNIANKRPSDARPP 87
           A  PRPG  P    TP GP  G PG    P+ +P   G+  SG              +  
Sbjct: 56  AAYPRPGMLPGSRMTPQGPSMGPPGYGGNPSVRP---GLAQSGMDQSRKRPAPQQIQQVQ 112

Query: 88  NNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKR 147
                +  H         KKKK+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR
Sbjct: 113 QQAVQNRNHNA-------KKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKR 165

Query: 148 LDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNK 207
           LDIQEALKRP+KQKRKLRIFISNTF PAK   E  EG+VASWELRVEGRLLED+      
Sbjct: 166 LDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDAAL---- 221

Query: 208 SGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEW 267
                                  SK D  K KRKFSSFFKSLVIELDKDLYGPDNHLVEW
Sbjct: 222 -----------------------SKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEW 258

Query: 268 HRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISA 327
           HRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+HTQTRPVII A
Sbjct: 259 HRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQA 318

Query: 328 LWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           LWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+ LL PP+PI+INH+I
Sbjct: 319 LWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI 377

Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q6P9Z1|SMRD3_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/357 (61%), Positives = 255/357 (71%), Gaps = 46/357 (12%)

Query: 38  RPGFTPTPPGPRPGGPGVPPNQQPPYTG---MRPS-GPVNPNIANKRPSDARPPNNLKND 93
           RPG       P  G P  PP    PY G   +RP   P     A KR   A PP   +  
Sbjct: 27  RPGMPSGARMPHQGAPMGPPGS--PYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQAQ 82

Query: 94  YQHGPPGPGPIK----KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD 149
            Q  P    P +    K++K+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR+D
Sbjct: 83  GQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVD 142

Query: 150 IQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSG 209
           IQEALKRPMKQKRKLR++ISNTF PAK                                 
Sbjct: 143 IQEALKRPMKQKRKLRLYISNTFNPAK------------------------------PDA 172

Query: 210 EGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 269
           E  +GS+ASWELRVEG+LL    +DP+K KRKFSSFFKSLVIELDKDLYGPDNHLVEWHR
Sbjct: 173 EDSDGSIASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 228

Query: 270 TPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 329
           TPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+HTQ+R  I+ ALW
Sbjct: 229 TPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALW 288

Query: 330 QYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           QY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL  LL PPDPIVINH+I
Sbjct: 289 QYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVI 345

Plays a role in ATP dependent nucleosome remodeling by SMARCA4 containing complexes. Stimulates nuclear receptor mediated transcription (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Mus musculus (taxid: 10090)

>sp|Q6STE5|SMRD3_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/357 (61%), Positives = 255/357 (71%), Gaps = 46/357 (12%)

Query: 38  RPGFTPTPPGPRPGGPGVPPNQQPPYTG---MRPS-GPVNPNIANKRPSDARPPNNLKND 93
           RPG       P  G P  PP    PY G   +RP   P     A KR   A PP   +  
Sbjct: 27  RPGMPSGARMPHQGAPMGPPGS--PYMGSPAVRPGLAPAGMEPARKRA--APPPGQSQAQ 82

Query: 94  YQHGPPGPGPIK----KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD 149
            Q  P    P +    K++K+ADKILPQ++R+LVPESQAYMDLLAFERKLD TIMRKR+D
Sbjct: 83  SQGQPVPTAPARSRSAKRRKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVD 142

Query: 150 IQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSG 209
           IQEALKRPMKQKRKLR++ISNTF PAK                                 
Sbjct: 143 IQEALKRPMKQKRKLRLYISNTFNPAK------------------------------PDA 172

Query: 210 EGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 269
           E  +GS+ASWELRVEG+LL    +DP+K KRKFSSFFKSLVIELDKDLYGPDNHLVEWHR
Sbjct: 173 EDSDGSIASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 228

Query: 270 TPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 329
           TPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLLG+HTQ+R  I+ ALW
Sbjct: 229 TPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALW 288

Query: 330 QYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           QY+KT++LQD+H++E+IN DK+F+QIF CPR+KF+EIPQRL  LL PPDPIVINH+I
Sbjct: 289 QYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVI 345

Plays a role in ATP dependent nucleosome remodeling by SMARCA4 containing complexes. Stimulates nuclear receptor mediated transcription. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.

Homo sapiens (taxid: 9606)

>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=3

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/383 (54%), Positives = 255/383 (66%), Gaps = 43/383 (11%)

Query: 16  LRYPPPSGPPMRYGNQNMAMQPRPGFTPT-PPGPRPG--GPGVPPNQQPPYTGMRPSGPV 72
           LR P PSG         M +     F P  P GP      PG+ P  + P  G++   P 
Sbjct: 42  LRGPGPSG--------GMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPA 93

Query: 73  NPNIANKRPSDARPPNNLKNDY-------QHGPPGPGPIK--KKKKLADKILPQKVRDLV 123
                   P     P  + + +       Q  PP P   +  K++K+ADK+LPQ++R+LV
Sbjct: 94  GSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELV 153

Query: 124 PESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEE 183
           PESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+ISNTF P+K  G+   
Sbjct: 154 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGD--- 210

Query: 184 GSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFS 243
                           +S       G      VASWELRVEG+LL    +DP+K KRKFS
Sbjct: 211 ----------------NSGTAGTPGGTPAADKVASWELRVEGKLL----DDPSKQKRKFS 250

Query: 244 SFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQ 303
           SFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q
Sbjct: 251 SFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQ 310

Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
           +KLDPRLARLLGVHTQTR  I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F
Sbjct: 311 YKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRF 370

Query: 364 AEIPQRLNPLLHPPDPIVINHII 386
           +EIP +L  LL  PDPIVINH+I
Sbjct: 371 SEIPMKLAGLLQHPDPIVINHVI 393

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Rattus norvegicus (taxid: 10116)

>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=3

 Score =  385 bits (990), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/353 (56%), Positives = 249/353 (70%), Gaps = 32/353 (9%)

Query: 43  PTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDY-------Q 95
           P  P  +   PG+ P  + P  G++   P         P     P  + + +       Q
Sbjct: 64  PAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKRLLVPQ 123

Query: 96  HGPPGPGPIK--KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEA 153
             PP P   +  K++K+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA
Sbjct: 124 AQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEA 183

Query: 154 LKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEE 213
           +K+P+ QKRKLRI+ISNTF P+K   EG+    A                 P  +  G++
Sbjct: 184 IKKPLTQKRKLRIYISNTFSPSK--AEGDSAGTA---------------GTPGGTPAGDK 226

Query: 214 GSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTT 273
             VASWELRVEG+LL    +DP+K KRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTT
Sbjct: 227 --VASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTT 280

Query: 274 QETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIK 333
           QETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR  I+ ALW YIK
Sbjct: 281 QETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIK 340

Query: 334 THKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
            ++LQD HERE+INC+++F QIFSC R++F+EIP +L  LL  PDPIVINH+I
Sbjct: 341 HNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Homo sapiens (taxid: 9606)

>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=2

 Score =  385 bits (988), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/383 (54%), Positives = 255/383 (66%), Gaps = 43/383 (11%)

Query: 16  LRYPPPSGPPMRYGNQNMAMQPRPGFTPT-PPGPRPG--GPGVPPNQQPPYTGMRPSGPV 72
           LR P PSG         M +     F P  P GP      PG+ P  + P  G++   P 
Sbjct: 42  LRGPGPSG--------GMGVPGAAAFRPMGPAGPAAQYQRPGMSPGSRMPMAGLQVGPPA 93

Query: 73  NPNIANKRPSDARPPNNLKNDY-------QHGPPGPGPIK--KKKKLADKILPQKVRDLV 123
                   P     P  + + +       Q  PP P   +  K++K+ADK+LPQ++R+LV
Sbjct: 94  GSPFGTAAPLRPGMPPTMMDPFRKRLLVPQAQPPMPAQRRGLKRRKMADKVLPQRIRELV 153

Query: 124 PESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGEE 183
           PESQAYMDLLAFERKLD TI RKR++IQEA+K+P+ QKRKLRI+ISNTF P+K  G+   
Sbjct: 154 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKADGD--- 210

Query: 184 GSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFS 243
                           ++       G      VASWELRVEG+LL    +DP+K KRKFS
Sbjct: 211 ----------------NAGTAGTPGGTPAADKVASWELRVEGKLL----DDPSKQKRKFS 250

Query: 244 SFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQ 303
           SFFKSLVIELDK+LYGPDNHLVEWHR PTTQETDGFQVKRPGD NV+CT+LL+LD+QP Q
Sbjct: 251 SFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQ 310

Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
           +KLDPRLARLLGVHTQTR  I+ ALW YIK ++LQD HERE+INC+++F QIFSC R++F
Sbjct: 311 YKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRF 370

Query: 364 AEIPQRLNPLLHPPDPIVINHII 386
           +EIP +L  LL  PDPIVINH+I
Sbjct: 371 SEIPMKLAGLLQHPDPIVINHVI 393

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Mus musculus (taxid: 10090)

>sp|E1BJD1|SMRD2_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Bos taurus GN=SMARCD2 PE=3 SV=1

 Score =  381 bits (978), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/353 (55%), Positives = 244/353 (69%), Gaps = 32/353 (9%)

Query: 43  PTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDY-------Q 95
           P  P  +   PG+ P  + P  G++   P         P     P  + + +       Q
Sbjct: 64  PAGPAAQYQRPGMSPGSRMPMAGLQVGPPAGSPFGTAAPLRPGMPPTMMDPFRKRLLVPQ 123

Query: 96  HGPPGPGPIK--KKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEA 153
             PP P   +  K++K+ADK+LPQ++R+LVPESQAYMDLLAFERKLD TI RKR++IQEA
Sbjct: 124 AQPPMPAQRRGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQEA 183

Query: 154 LKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEE 213
           +K+P+ QKRKLRI+ISNTF P+K  G+    +          +                 
Sbjct: 184 IKKPLTQKRKLRIYISNTFSPSKAEGDTAGTTGTPGGTPAGDK----------------- 226

Query: 214 GSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTT 273
             VASWELRVEG+LL    +DP+K KRKFSSFFKSLVIELDK+LYGPDNHLVEWHR PTT
Sbjct: 227 --VASWELRVEGKLL----DDPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTT 280

Query: 274 QETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIK 333
           QETDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR  I+ ALW YIK
Sbjct: 281 QETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIK 340

Query: 334 THKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
            ++LQD HERE+INC+++F QIFSC R++F+EIP +L  LL  PDPIVINH+I
Sbjct: 341 HNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Bos taurus (taxid: 9913)

>sp|Q9FMT4|SNF12_ARATH SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1

 Score =  188 bits (477), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/311 (35%), Positives = 174/311 (55%), Gaps = 28/311 (9%)

Query: 80  RPSDARPPNNLKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKL 139
           RP  A   NN  +  +     P   KKK+KL +K L ++V  ++PES  Y  LL FE ++
Sbjct: 117 RPPGAPASNNTISPMRTMELTPAARKKKQKLPEKSLQERVAAILPESALYTQLLEFESRV 176

Query: 140 DSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGE-EGSVASWELRVEGRLL 198
           D+ + RK++DIQEALK P   ++ LRI++ N+F     +  G       +W L++ GR+L
Sbjct: 177 DAALTRKKVDIQEALKNPPCIQKTLRIYVFNSFANQNNTIPGNPNADPPTWTLKIIGRIL 236

Query: 199 EDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLY 258
           ED   DP++ G  ++                      N +  KFSSFFK + + LD+ LY
Sbjct: 237 EDGV-DPDQPGFVQKA---------------------NPLHPKFSSFFKRVTVSLDQRLY 274

Query: 259 GPDNHLVEWH--RTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGV 316
            P+N L+ W   R+P  QE  GF++KR G++    +I L ++Y P +FKL   L  +LG+
Sbjct: 275 -PENPLIIWENARSPAPQE--GFEIKRKGNQEFAASIRLEMNYVPEKFKLSTALMDVLGI 331

Query: 317 HTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP 376
             +TRP II+A+W Y+K  KLQ+ ++  F NCD   +++F   ++KF  + Q+++  L P
Sbjct: 332 EVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP 391

Query: 377 PDPIVINHIIR 387
           P PI + H I+
Sbjct: 392 PPPIHLEHKIK 402

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
307206105	499	SWI/SNF-related matrix-associated actin-	0.887	0.697	0.714	1e-144
332023941	499	SWI/SNF-related matrix-associated actin-	0.887	0.697	0.711	1e-143
307183318	499	SWI/SNF-related matrix-associated actin-	0.887	0.697	0.709	1e-143
350418264	499	PREDICTED: SWI/SNF-related matrix-associ	0.887	0.697	0.704	1e-142
340726624	499	PREDICTED: SWI/SNF-related matrix-associ	0.887	0.697	0.704	1e-142
383861944	499	PREDICTED: SWI/SNF-related matrix-associ	0.895	0.703	0.702	1e-142
380020614	499	PREDICTED: SWI/SNF-related matrix-associ	0.887	0.697	0.699	1e-141
322798220	467	hypothetical protein SINV_00172 [Solenop	0.798	0.670	0.761	1e-141
328788694	458	PREDICTED: SWI/SNF-related matrix-associ	0.887	0.759	0.699	1e-141
242021871	494	brg-1 associated factor, putative [Pedic	0.872	0.692	0.703	1e-140

>gi|307206105|gb|EFN84185.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Harpegnathos saltator]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 285/399 (71%), Positives = 303/399 (75%), Gaps = 51/399 (12%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTP----PGPRPGG 52
           M+QRF      N  P   RYPP S PP   +Y   N  MQ R GFTP P     GP PGG
Sbjct: 1   MAQRFPVPNTGNNGPPSQRYPPSSVPPNLRQYSGPNFPMQQRSGFTPPPQMGNAGPGPGG 60

Query: 53  PGVPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             + PNQ  PY+ MR    P+ PV     ++R P   + P    +D+ H        KKK
Sbjct: 61  I-MRPNQ--PYSNMRQGPMPTPPVGKRSTDQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+CPRMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACPRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023941|gb|EGI64159.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Acromyrmex echinatior]

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 284/399 (71%), Positives = 304/399 (76%), Gaps = 51/399 (12%)

Query: 1   MSQRFQ--GSQNTNQAPLRYPPPSGPP--MRYGNQNMAMQPRPGFTPTP----PGPRPGG 52
           M+QRF    + +    P RYP  S PP   +Y   N  MQ R GFTP P     GP PGG
Sbjct: 1   MAQRFPVPNAGSNGPPPQRYPQSSVPPNLRQYSGPNFPMQQRSGFTPPPQMGNAGPGPGG 60

Query: 53  PGVPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             + PNQ  PY+ MR    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 61  I-MRPNQ--PYSNMRQGPMPTPPVGKRSADQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+CPRMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACPRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183318|gb|EFN70187.1| SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Camponotus floridanus]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 283/399 (70%), Positives = 305/399 (76%), Gaps = 51/399 (12%)

Query: 1   MSQRFQ--GSQNTNQAPLRYPPPSGPP--MRYGNQNMAMQPRPGFTPTP----PGPRPGG 52
           M+QRF    + +    P RYPP + PP   +Y   N  +Q R GFTP P     GP PGG
Sbjct: 1   MAQRFPVPNTGSNGPPPQRYPPAAVPPNLRQYSGPNFPIQQRSGFTPPPQMGNAGPGPGG 60

Query: 53  PGVPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             + PNQ  PY+ +R    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 61  I-MRPNQ--PYSNLRQGPMPTPPVGKRTADQRIPMSQQKPCFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+CPRMKFAEIPQRLNPLLHPPDPIVINHII
Sbjct: 323 CDKYLEQIFACPRMKFAEIPQRLNPLLHPPDPIVINHII 361

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418264|ref|XP_003491804.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Bombus impatiens]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/399 (70%), Positives = 300/399 (75%), Gaps = 51/399 (12%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTPPGPRPGGPG-- 54
           M+QRF      N  P   RY   S PP   +Y + N  MQ R GFTP PP     GPG  
Sbjct: 1   MAQRFPVPNTGNNGPPPQRYAASSVPPNLRQYSSPNFPMQQRSGFTP-PPQMANAGPGPA 59

Query: 55  --VPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             +  NQ  PY+ MR    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 60  SIIRANQ--PYSNMRQGPMPTPPVGKRSADQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+C RMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACSRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340726624|ref|XP_003401655.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Bombus terrestris]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/399 (70%), Positives = 300/399 (75%), Gaps = 51/399 (12%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTPPGPRPGGPG-- 54
           M+QRF      N  P   RY   S PP   +Y + N  MQ R GFTP PP     GPG  
Sbjct: 1   MAQRFPVPNTGNNGPPPQRYAASSVPPNLRQYSSPNFPMQQRSGFTP-PPQMANAGPGPA 59

Query: 55  --VPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             +  NQ  PY+ MR    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 60  SIIRANQ--PYSNMRQGPMPNPPVGKRSADQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+C RMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACSRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861944|ref|XP_003706444.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Megachile rotundata]

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 278/396 (70%), Positives = 296/396 (74%), Gaps = 45/396 (11%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTPPGPRPG-GPGV 55
           M+QRF      N  P   RY   S PP   +Y N N  MQ R GFTP P     G GP  
Sbjct: 1   MAQRFPVPNTGNNGPPPQRYAASSVPPNLRQYSNPNFPMQQRSGFTPPPQMANTGPGPAS 60

Query: 56  PPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKKKKL 110
                 PY+ +R    P+ PV    A++R P   + P    +D+ H        KKKKKL
Sbjct: 61  IIRGNQPYSNLRQGPMPTPPVGKRSADQRIPISQQKPYFWNSDFSHSTS-----KKKKKL 115

Query: 111 ADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISN 170
           ADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIFISN
Sbjct: 116 ADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIFISN 175

Query: 171 TFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLED 230
           TFYPAKE+GEG                              EEGSVASWELRVEGRLL+D
Sbjct: 176 TFYPAKEAGEG------------------------------EEGSVASWELRVEGRLLDD 205

Query: 231 SKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVR 290
           +KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDKNVR
Sbjct: 206 TKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDKNVR 265

Query: 291 CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK 350
           CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFINCDK
Sbjct: 266 CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFINCDK 325

Query: 351 FFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           + EQIF+C RMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 326 YLEQIFACSRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020614|ref|XP_003694177.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Apis florea]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/399 (69%), Positives = 299/399 (74%), Gaps = 51/399 (12%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTPPGPRPGGPG-- 54
           M+QRF      N  P   RY   S PP   +Y   N  MQ R GFTP PP     GPG  
Sbjct: 1   MAQRFPVPNTGNNGPPPQRYAASSVPPNLRQYSGPNFPMQQRSGFTP-PPQMANAGPGPA 59

Query: 55  --VPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             +  NQ  PY+ MR    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 60  SIIRANQ--PYSNMRQGPMPTPPVGKRSADQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELD+DLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDRDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NV+CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVQCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+C RMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACSRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798220|gb|EFZ20012.1| hypothetical protein SINV_00172 [Solenopsis invicta]

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 272/357 (76%), Positives = 286/357 (80%), Gaps = 44/357 (12%)

Query: 35  MQPRPGFTPTP----PGPRPGGPGVPPNQQPPYTGMRPSGPVNPNIANKRPSDAR-PPNN 89
           MQ R GFTP P     GP PGG  + PNQ  PY+ MR  GP+      KR +D R P + 
Sbjct: 12  MQQRSGFTPPPQMGNAGPGPGGI-MRPNQ--PYSNMR-QGPMPTPPVGKRSADQRIPMSQ 67

Query: 90  LKNDYQHGPPGPGPIKKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLD 149
            K D+ H        KKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLD
Sbjct: 68  QKPDFSHSTS-----KKKKKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLD 122

Query: 150 IQEALKRPMKQKRKLRIFISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSG 209
           IQEALKRPMKQKRKLRIFISNTFYPAKE+GEG                            
Sbjct: 123 IQEALKRPMKQKRKLRIFISNTFYPAKEAGEG---------------------------- 154

Query: 210 EGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 269
             EEGSVASWELRVEGRLL+D+KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR
Sbjct: 155 --EEGSVASWELRVEGRLLDDTKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHR 212

Query: 270 TPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 329
           T TTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW
Sbjct: 213 TLTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALW 272

Query: 330 QYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           QYIKTHKLQD+HEREFINCDK+ EQIF+CPRMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 273 QYIKTHKLQDSHEREFINCDKYLEQIFACPRMKFAEIPQRLNPLLHPPDPIVINHVI 329

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788694|ref|XP_003251168.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1-like [Apis mellifera]

 Score =  506 bits (1304), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 279/399 (69%), Positives = 299/399 (74%), Gaps = 51/399 (12%)

Query: 1   MSQRFQGSQNTNQAP--LRYPPPSGPP--MRYGNQNMAMQPRPGFTPTPPGPRPGGPG-- 54
           M+QRF      N  P   RY   S PP   +Y   N  MQ R GFTP PP     GPG  
Sbjct: 1   MAQRFPVPNTGNNGPPPQRYAASSVPPNLRQYSGPNFPMQQRSGFTP-PPQMANAGPGPA 59

Query: 55  --VPPNQQPPYTGMR----PSGPVNPNIANKR-PSDARPPNNLKNDYQHGPPGPGPIKKK 107
             +  NQ  PY+ MR    P+ PV    A++R P   + P    +D+ H        KKK
Sbjct: 60  SIIRANQ--PYSNMRQGPMPTPPVGKRSADQRIPMSQQKPYFWNSDFSHSTS-----KKK 112

Query: 108 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIF 167
           KKLADKILPQKVRDLVPESQAYMDLLAFERKLD+TIMRKRLDIQEALKRPMKQKRKLRIF
Sbjct: 113 KKLADKILPQKVRDLVPESQAYMDLLAFERKLDATIMRKRLDIQEALKRPMKQKRKLRIF 172

Query: 168 ISNTFYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRL 227
           ISNTFYPAKE+GEG                              EEGSVASWELRVEGRL
Sbjct: 173 ISNTFYPAKEAGEG------------------------------EEGSVASWELRVEGRL 202

Query: 228 LEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDK 287
           L+D+KNDPNKVKRKFSSFFKSLVIELD+DLYGPDNHLVEWHRT TTQETDGFQVKRPGDK
Sbjct: 203 LDDTKNDPNKVKRKFSSFFKSLVIELDRDLYGPDNHLVEWHRTLTTQETDGFQVKRPGDK 262

Query: 288 NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFIN 347
           NV+CTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQD+HEREFIN
Sbjct: 263 NVQCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDSHEREFIN 322

Query: 348 CDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
           CDK+ EQIF+C RMKFAEIPQRLNPLLHPPDPIVINH+I
Sbjct: 323 CDKYLEQIFACSRMKFAEIPQRLNPLLHPPDPIVINHVI 361

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021871|ref|XP_002431366.1| brg-1 associated factor, putative [Pediculus humanus corporis] gi|212516642|gb|EEB18628.1| brg-1 associated factor, putative [Pediculus humanus corporis]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 278/395 (70%), Positives = 292/395 (73%), Gaps = 53/395 (13%)

Query: 1   MSQRFQGSQNTNQAPLRYPPPSGPPMR-YGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
           MSQRF  +   +    RYP P  PP+R +   +  +Q RP F     GP   G  +   Q
Sbjct: 1   MSQRFSSTNAQSPPAQRYPGPQVPPLRQFAGPSFPIQNRPTFN----GPPTSGGNIMAQQ 56

Query: 60  QPPYTGMRPSGPV-----NPNIANKRPSDARPP--NNLKNDYQ-HGPPGPGPIKKKKKLA 111
            P     R S P       PN A + P D  PP     K D+  H  P     KKKKKLA
Sbjct: 57  SP-----RASAPYVPRLGAPNPAKRGPGDRNPPPTAQSKTDFAVHQMP-----KKKKKLA 106

Query: 112 DKILPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNT 171
           DKILPQK+RDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNT
Sbjct: 107 DKILPQKIRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNT 166

Query: 172 FYPAKESGEGEEGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDS 231
           FYP+KE  EGEE                              GSVASWELRVEGRLL+DS
Sbjct: 167 FYPSKEPSEGEE------------------------------GSVASWELRVEGRLLDDS 196

Query: 232 KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRC 291
           KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGDKNVRC
Sbjct: 197 KNDPNKVKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDKNVRC 256

Query: 292 TILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKF 351
           TILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDK+
Sbjct: 257 TILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKY 316

Query: 352 FEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
            EQIF+CPRMKFAEIPQRLNPLLHPPDPIVINHII
Sbjct: 317 LEQIFTCPRMKFAEIPQRLNPLLHPPDPIVINHII 351

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
MGI|MGI:1933621	531	Smarcd2 "SWI/SNF related, matr	0.426	0.314	0.695	1.6e-99
FB|FBgn0025463	515	Bap60 "Brahma associated prote	0.464	0.353	0.843	2.7e-86
UNIPROTKB|F1MTG9	515	SMARCD1 "SWI/SNF-related matri	0.487	0.370	0.723	3.7e-74
UNIPROTKB|Q96GM5	515	SMARCD1 "SWI/SNF-related matri	0.487	0.370	0.723	3.7e-74
MGI|MGI:1933623	515	Smarcd1 "SWI/SNF related, matr	0.487	0.370	0.723	3.7e-74
RGD|1305406	515	Smarcd1 "SWI/SNF related, matr	0.487	0.370	0.723	3.7e-74
UNIPROTKB|Q2TBN1	515	SMARCD1 "SWI/SNF-related matri	0.487	0.370	0.723	3.7e-74
UNIPROTKB|H9KZE0	516	SMARCD1 "Uncharacterized prote	0.487	0.370	0.717	8.6e-72
ZFIN|ZDB-GENE-080509-2	476	smarcd3b "SWI/SNF related, mat	0.471	0.388	0.708	2.3e-71
UNIPROTKB|F1NJN5	462	SMARCD3 "Uncharacterized prote	0.477	0.404	0.708	3.7e-71

MGI|MGI:1933621 Smarcd2 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2" [Mus musculus (taxid:10090)]

 Score = 640 (230.4 bits), Expect = 1.6e-99, Sum P(4) = 1.6e-99
 Identities = 119/171 (69%), Positives = 140/171 (81%)

Query:   216 VASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDLYGPDNHLVEWHRTPTTQE 275
             VASWELRVEG+LL+D    P+K           LVIELDK+LYGPDNHLVEWHR PTTQE
Sbjct:   227 VASWELRVEGKLLDD----PSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQE 282

Query:   276 TDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTH 335
             TDGFQVKRPGD NV+CT+LL+LD+QP Q+KLDPRLARLLGVHTQTR  I+ ALW YIK +
Sbjct:   283 TDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHN 342

Query:   336 KLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHII 386
             +LQD HERE+INC+++F QIFSC R++F+EIP +L  LL  PDPIVINH+I
Sbjct:   343 QLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI 393

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

FB|FBgn0025463 Bap60 "Brahma associated protein 60kD" [Drosophila melanogaster (taxid:7227)]

 Score = 828 (296.5 bits), Expect = 2.7e-86, Sum P(2) = 2.7e-86
 Identities = 156/185 (84%), Positives = 165/185 (89%)

Query:   205 PNK--SGEGEEGSVASWELRVEGRLLEDSKNDPN-KVXXXXXXXXXXLVIELDKDLYGPD 261
             P+K  + +GEEG+VASWELRVEGRLLED K DPN K+          LVIELDK+LYGPD
Sbjct:   194 PSKEPTNDGEEGAVASWELRVEGRLLEDGKGDPNTKIKRKFSSFFKSLVIELDKELYGPD 253

Query:   262 NHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR 321
             NHLVEWHRT TTQETDGFQVKRPGD+NVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR
Sbjct:   254 NHLVEWHRTHTTQETDGFQVKRPGDRNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTR 313

Query:   322 PVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIV 381
             PVIISALWQYIKTHKLQDAHERE+INCDK+ EQIFSC RMKFAEIPQRLNPLLHPPDPIV
Sbjct:   314 PVIISALWQYIKTHKLQDAHEREYINCDKYLEQIFSCQRMKFAEIPQRLNPLLHPPDPIV 373

Query:   382 INHII 386
             INH I
Sbjct:   374 INHFI 378

GO:0003713 "transcription coactivator activity" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0035060 "brahma complex" evidence=IDA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0010628 "positive regulation of gene expression" evidence=IGI

GO:0001085 "RNA polymerase II transcription factor binding" evidence=IPI

GO:0031453 "positive regulation of heterochromatin assembly" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISS

GO:0003677 "DNA binding" evidence=IDA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

UNIPROTKB|F1MTG9 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)]

 Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 141/195 (72%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLEDS   K D  K           LVI
Sbjct:   183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   363 ALLMPPEPIIINHVI 377

GO:0071565 "nBAF complex" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=IEA

UNIPROTKB|Q96GM5 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Homo sapiens (taxid:9606)]

 Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 141/195 (72%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLEDS   K D  K           LVI
Sbjct:   183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   363 ALLMPPEPIIINHVI 377

GO:0007399 "nervous system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IMP

GO:0006338 "chromatin remodeling" evidence=IDA;IMP

GO:0016514 "SWI/SNF complex" evidence=IDA

GO:0071564 "npBAF complex" evidence=ISS

GO:0071565 "nBAF complex" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0006337 "nucleosome disassembly" evidence=IDA

MGI|MGI:1933623 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Mus musculus (taxid:10090)]

 Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 141/195 (72%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLED---SKNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLED   SK D  K           LVI
Sbjct:   183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDAALSKYDATKQKRKFSSFFKSLVI 242

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLH 362

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   363 ALLMPPEPIIINHVI 377

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0007399 "nervous system development" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=ISO

GO:0016568 "chromatin modification" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=ISO

GO:0071564 "npBAF complex" evidence=IDA

GO:0071565 "nBAF complex" evidence=IDA

RGD|1305406 Smarcd1 "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 141/195 (72%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLEDS   K D  K           LVI
Sbjct:   183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   363 ALLMPPEPIIINHVI 377

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0006337 "nucleosome disassembly" evidence=IEA;ISO

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0016514 "SWI/SNF complex" evidence=IEA;ISO

GO:0032947 "protein complex scaffold" evidence=IEA;ISO

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA;ISO

GO:0071564 "npBAF complex" evidence=IEA;ISO

GO:0071565 "nBAF complex" evidence=IEA;ISO

UNIPROTKB|Q2TBN1 SMARCD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1" [Bos taurus (taxid:9913)]

 Score = 729 (261.7 bits), Expect = 3.7e-74, Sum P(2) = 3.7e-74
 Identities = 141/195 (72%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLEDS   K D  K           LVI
Sbjct:   183 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 242

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   243 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 302

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   303 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLH 362

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   363 ALLMPPEPIIINHVI 377

GO:0071565 "nBAF complex" evidence=ISS

GO:0071564 "npBAF complex" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

UNIPROTKB|H9KZE0 SMARCD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
 Identities = 140/195 (71%), Positives = 156/195 (80%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDS---KNDPNKVXXXXXXXXXXLVI 251
             R+   +  +P KS  E  EG+VASWELRVEGRLLEDS   K D  K           LVI
Sbjct:   184 RIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVI 243

Query:   252 ELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLA 311
             ELDKDLYGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLA
Sbjct:   244 ELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLA 303

Query:   312 RLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLN 371
             RLLG+HTQTRPVII ALWQYIKTHKLQD HERE++ CDK+ +QIF   RMKF+EIPQRL+
Sbjct:   304 RLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREYVICDKYLQQIFESQRMKFSEIPQRLH 363

Query:   372 PLLHPPDPIVINHII 386
              LL PP+PI+INH+I
Sbjct:   364 ALLMPPEPIIINHVI 378

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0048096 "chromatin-mediated maintenance of transcription" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

ZFIN|ZDB-GENE-080509-2 smarcd3b "SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b" [Danio rerio (taxid:7955)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 134/189 (70%), Positives = 154/189 (81%)

Query:   198 LEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELDKDL 257
             + ++ N      E  EGS+ASWELRVEG+LL+D    P K+          LVIELDKDL
Sbjct:   154 ISNTFNAAKPDAEDSEGSIASWELRVEGKLLDD----PGKMKRKFSSFFKSLVIELDKDL 209

Query:   258 YGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVH 317
             YGPDNHLVEWHRT TTQETDGFQVKRPGD NVRCT+LL+LDYQP QFKLDPRLARLLG+H
Sbjct:   210 YGPDNHLVEWHRTGTTQETDGFQVKRPGDVNVRCTLLLMLDYQPPQFKLDPRLARLLGIH 269

Query:   318 TQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPP 377
             TQTR  II ALWQY+KT+KLQD+H++E+INCDK+F+QIF CPR+KF+EIPQRL  LL PP
Sbjct:   270 TQTRSSIIQALWQYVKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLLLPP 329

Query:   378 DPIVINHII 386
             DPIVINHII
Sbjct:   330 DPIVINHII 338

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0003007 "heart morphogenesis" evidence=IGI

GO:0055007 "cardiac muscle cell differentiation" evidence=IGI

UNIPROTKB|F1NJN5 SMARCD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 136/192 (70%), Positives = 156/192 (81%)

Query:   196 RLLEDSKNDPNKS-GEGEEGSVASWELRVEGRLLEDSKNDPNKVXXXXXXXXXXLVIELD 254
             RL   +  +P KS  +  +GS+ASWELRVEG+LL+D      K           LVIELD
Sbjct:   137 RLYISNTFNPAKSDADDSDGSIASWELRVEGKLLDDLSKQKRKFSSFFKS----LVIELD 192

Query:   255 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLL 314
             KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGD +VRCT+LL+LDYQP QFKLDPRLARLL
Sbjct:   193 KDLYGPDNHLVEWHRTPTTQETDGFQVKRPGDVSVRCTLLLMLDYQPPQFKLDPRLARLL 252

Query:   315 GVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLL 374
             G+HTQTR  II ALWQYIKT+KLQD+H++E+INCDK+F+QIF CPR+KF+EIPQRL  LL
Sbjct:   253 GIHTQTRSAIIQALWQYIKTNKLQDSHDKEYINCDKYFQQIFDCPRLKFSEIPQRLTNLL 312

Query:   375 HPPDPIVINHII 386
              PPDPIVINHII
Sbjct:   313 LPPDPIVINHII 324

GO:0006337 "nucleosome disassembly" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0030374 "ligand-dependent nuclear receptor transcription coactivator activity" evidence=IEA

GO:0035257 "nuclear hormone receptor binding" evidence=IEA

GO:0042692 "muscle cell differentiation" evidence=IEA

GO:0043393 "regulation of protein binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0003139 "secondary heart field specification" evidence=IEA

GO:0003219 "cardiac right ventricle formation" evidence=IEA

GO:0003407 "neural retina development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96GM5	SMRD1_HUMAN	No assigned EC number	0.6434	0.8061	0.6135	yes	N/A
Q61466	SMRD1_MOUSE	No assigned EC number	0.6406	0.8061	0.6135	yes	N/A
Q2TBN1	SMRD1_BOVIN	No assigned EC number	0.6545	0.8061	0.6135	yes	N/A
Q9P7S3	SSR3_SCHPO	No assigned EC number	0.3521	0.7015	0.6470	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	392
smart00151	77	smart00151, SWIB, SWI complex, BAF60b domains	4e-30
pfam02201	76	pfam02201, SWIB, SWIB/MDM2 domain	2e-25
COG5531	237	COG5531, COG5531, SWIB-domain-containing proteins	8e-14
PRK14724	987	PRK14724, PRK14724, DNA topoisomerase III; Provisi	6e-05
PRK06319	860	PRK06319, PRK06319, DNA topoisomerase I/SWI domain	9e-05

>gnl|CDD|128456 smart00151, SWIB, SWI complex, BAF60b domains

 Score =  110 bits (277), Expect = 4e-30
 Identities = 32/77 (41%), Positives = 39/77 (50%)

Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
              +  L P LA++LG    TR  II  LW+YIK H LQD   +  I CD   EQIF   
Sbjct: 1   ITKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKD 60

Query: 360 RMKFAEIPQRLNPLLHP 376
           RM   E+ + L P L  
Sbjct: 61  RMDMFEMNKLLTPHLIK 77

Length = 77

>gnl|CDD|145386 pfam02201, SWIB, SWIB/MDM2 domain

 Score = 97.7 bits (244), Expect = 2e-25
 Identities = 27/75 (36%), Positives = 38/75 (50%)

Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
               F L P LA+ LG    +R  ++  LWQYIK H LQD   +  I CD+  + IF   
Sbjct: 1   LTKPFPLSPDLAKFLGAGELSRTEVVKKLWQYIKEHNLQDPKNKRIILCDEKLKSIFGGD 60

Query: 360 RMKFAEIPQRLNPLL 374
           R+ F E+ + L+   
Sbjct: 61  RVGFFEMSKLLSSHF 75

This family includes the SWIB domain and the MDM2 domain. The p53-associated protein (MDM2) is an inhibitor of the p53 tumour suppressor gene binding the transactivation domain and down regulating the ability of p53 to activate transcription. This family contains the p53 binding domain of MDM2. Length = 76

>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

 Score = 70.2 bits (172), Expect = 8e-14
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 12/186 (6%)

Query: 197 LLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIE---- 252
            L+  + D N   +  +   + W +R+EGR      ND   ++ KF S  +   +     
Sbjct: 14  WLQLDERDTNNEKDVGKLLFSEWTVRLEGRF--KDNNDL--IRDKFDSLAEEPRVLRKEK 69

Query: 253 ---LDKDLYGPDNHLVEWHRTPTTQET-DGFQVKRPGDKNVRCTILLLLDYQPLQFKLDP 308
                K     D    E    P+++ET +G    +  DK  + + +        + KL P
Sbjct: 70  YNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVKLSP 129

Query: 309 RLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQ 368
           +LA +LG+   TRP  +  LW+YIK H LQD + +  I CD   +++     +   E+ +
Sbjct: 130 KLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLGSDPIDMFELTK 189

Query: 369 RLNPLL 374
            L+P L
Sbjct: 190 PLSPHL 195

Length = 237

>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 19/57 (33%), Positives = 29/57 (50%)

Query: 310 LARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEI 366
           LA ++G     RP +I  LW YIK + LQD  ++  IN D     +F   ++   E+
Sbjct: 922 LAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMFEL 978

Length = 987

>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein; Validated

 Score = 44.4 bits (105), Expect = 9e-05
 Identities = 15/68 (22%), Positives = 29/68 (42%)

Query: 304 FKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKF 363
           +   P LA ++G     R      +W YIK H LQ    ++ I  D   + +     +  
Sbjct: 788 YTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIGPDPIDM 847

Query: 364 AEIPQRLN 371
            ++ ++L+
Sbjct: 848 FQLSKKLS 855

Length = 860

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
KOG2570|consensus	420		100.0
COG5531	237	SWIB-domain-containing proteins implicated in chro	99.89
smart00151	77	SWIB SWI complex, BAF60b domains.	99.88
PF02201	76	SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SW	99.87
KOG1946|consensus	240		99.75
PRK14724	987	DNA topoisomerase III; Provisional	99.68
PRK06319	860	DNA topoisomerase I/SWI domain fusion protein; Val	99.14
KOG1924|consensus	1102		96.55
KOG1924|consensus	1102		95.35
KOG2893|consensus	341		81.19

>KOG2570|consensus

Probab=100.00  E-value=2.2e-79  Score=611.56  Aligned_cols=255  Identities=73%  Similarity=1.152  Sum_probs=239.3

Q ss_pred             ccccCCccccC-CchHHHhhcccHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCCccccceEEEEEEEeecCCCCCCCCC
Q psy18120        104 IKKKKKLADKI-LPQKVRDLVPESQAYMDLLAFERKLDSTIMRKRLDIQEALKRPMKQKRKLRIFISNTFYPAKESGEGE  182 (392)
Q Consensus       104 ~~k~rKptDk~-iP~~v~~lvPes~~Y~~L~d~ErrLD~tI~RKrlDiqesl~rp~k~kR~LRIfIsNT~~~q~~~~e~~  182 (392)
                      ..||+|..||. ||+.|.+++||++.|++|++||+|||++|+|||+||||++++|.+.+|+|||||||||++|+|+..+.
T Consensus        39 ~~kk~kl~dk~~i~~~~~~~ipes~~y~~Ll~~e~Kld~~i~Rk~~diqealK~p~~~kk~LRIyI~ntf~~~~~~~~~~  118 (420)
T KOG2570|consen   39 ELKKKKLADKLNIPQRILELIPESQAYMDLLAFERKLDSTIIRKRLDIQEALKRPPKIKKKLRIYISNTFENQKPSTKDT  118 (420)
T ss_pred             hhhhhhcchhcccCHHHHhhCccHHHHHHHHHHHHHhhhHHHHhhhhHHHHhcCCccccceEEEEEEecccCCCCCCCCC
Confidence            36888888888 99999999999999999999999999999999999999999999999999999999999988754331


Q ss_pred             CCCccchhhhhccccccCCCCCCCCCCCCCCCCccccceeecCcccccCCCCCccccccccccchheEEEcccCCCCCCC
Q psy18120        183 EGSVASWELRVEGRLLEDSKNDPNKSGEGEEGSVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKDLYGPDN  262 (392)
Q Consensus       183 ~~~~~~wq~kieGrlldd~~~d~~~~~~~~~~~~~sWtLrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~l~~p~~  262 (392)
                      .                             +...++||||||||||++...+. . ++|||||||+|+||||+++|+|++
T Consensus       119 ~-----------------------------~a~~~sWtLriEGrLLd~~~~~~-~-krkFSsFfkslvIelDk~~y~P~~  167 (420)
T KOG2570|consen  119 P-----------------------------EADLPSWTLRIEGRLLDDPVDDW-G-KRKFSSFFKSLVIELDKDLYGPDN  167 (420)
T ss_pred             C-----------------------------CCCCcceeeeeeeeecccCcccc-c-cccchHHHhhhhhhhhhhhccCcc
Confidence            0                             11289999999999999962211 1 899999999999999999999999


Q ss_pred             ceeEeccCCCCCCCCCceeecCCCceeeEEEEEeecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCC
Q psy18120        263 HLVEWHRTPTTQETDGFQVKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHE  342 (392)
Q Consensus       263 ~~VEW~k~~~~~efDGfeiKR~G~~nv~~tI~L~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~d  342 (392)
                      |.||||++++++++|||+|||+|+.|+.|||+|+++|+|++|+|||.||.+||++++||++||.+||+|||.|+|||++|
T Consensus       168 ~lvEW~r~~~~~etdGf~VKR~Gd~~v~ctIll~l~~~P~~fklsp~La~lLGi~t~Trp~iI~alWqYIk~n~Lqd~~e  247 (420)
T KOG2570|consen  168 HLVEWHRDPNTNETDGFQVKRPGDRNVRCTILLLLDYQPEEFKLSPRLANLLGIHTGTRPDIVTALWQYIKTNKLQDPED  247 (420)
T ss_pred             ceeeeeecCCCCCcCceeeeccCCCccceEEEEeeccCCcccccCHHHHHHhhhccCcchHHHHHHHHHHHHhccCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeecchhHHhhcCCCccccccHHHHhhcCCCCCCCceEeEEEEee
Q psy18120        343 REFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIVINHIIRYL  389 (392)
Q Consensus       343 k~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~PI~I~YtIrv~  389 (392)
                      +.+|+||.+|++|||+++++|.+|+.+|++||.|++||+|+|+|+|+
T Consensus       248 ~~~incD~~l~qif~~~rl~F~elp~~l~~lL~P~dPIvi~h~I~v~  294 (420)
T KOG2570|consen  248 SDFINCDKALEQIFGVDRLKFPELPQLLNPLLSPPDPIVIDHTISVD  294 (420)
T ss_pred             chhhcchHHHHHhhcccccccccchhhhhhccCCCCCeeecceeccC
Confidence            99999999999999999999999999999999999999999999886

>COG5531 SWIB-domain-containing proteins implicated in chromatin remodeling [Chromatin structure and dynamics]

Probab=99.89  E-value=1e-23  Score=200.52  Aligned_cols=158  Identities=27%  Similarity=0.443  Sum_probs=123.6

Q ss_pred             CccccceeecCcccccCCCCCccccccccccchheEEEcccC-------CCCCCCceeEeccCCC-------CCCCCCce
Q psy18120        215 SVASWELRVEGRLLEDSKNDPNKVKRKFSSFFKSLVIELDKD-------LYGPDNHLVEWHRTPT-------TQETDGFQ  280 (392)
Q Consensus       215 ~~~sWtLrIeGrlL~d~~~d~~~~~~KFSsFfksI~VelD~~-------l~~p~~~~VEW~k~~~-------~~efDGfe  280 (392)
                      ..+.|+++|+||+..-  .  ...+.+|.++.....+++...       .+-.+....||...++       ..++++..
T Consensus        32 ~~~~~~~~l~~r~k~~--~--~~~~~~~~s~~~~~~~~~~~k~~~~r~~~~~~~~~~~~~~~~~s~k~~~n~~te~k~~~  107 (237)
T COG5531          32 LFSEWTVRLEGRFKDN--N--DLIRDKFDSLAEEPRVLRKEKYNITRKTTGKNDLPKEEDSSLPSSKETENGDTEGKETD  107 (237)
T ss_pred             cchhhheehhhhhhhc--c--chhhhhhhhhcccchhhhhhhhccCcccccccccccccccccCcchhhhcCcccccccc
Confidence            4789999999999873  2  234789999988887776432       1223445666765432       35678888


Q ss_pred             eecCCCceeeEEEEEeecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCc
Q psy18120        281 VKRPGDKNVRCTILLLLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR  360 (392)
Q Consensus       281 iKR~G~~nv~~tI~L~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~  360 (392)
                      .+|.++.+      .......+.|+||+.||.|||..++||++||+.||+|||.|||||++||++|.||+.|+.|||.+.
T Consensus       108 ~~k~~~~~------~~~~~~~~~~~lS~~La~ilG~~~~tr~~~v~~lw~YIk~h~lq~~~nkr~I~~D~~L~~v~g~~p  181 (237)
T COG5531         108 KKKKSSTI------SKNSPSGEKVKLSPKLAAILGLEPGTRPEAVKKLWKYIKKHNLQDPNNKRLILCDSKLKKVLGSDP  181 (237)
T ss_pred             cccccccc------ccccCCCCceecCHHHHHHhCCCCCCccHHHHHHHHHHHHhcCCCccccceecccHHHHHHhCCCc
Confidence            88777643      233446779999999999999999999999999999999999999999999999999999999889


Q ss_pred             cccccHHHHhhcCCCCCCCceEeEEEEee
Q psy18120        361 MKFAEIPQRLNPLLHPPDPIVINHIIRYL  389 (392)
Q Consensus       361 i~f~eI~~lL~~HL~P~~PI~I~YtIrv~  389 (392)
                      +.|++|.+.|.+||       |+|+|+|+
T Consensus       182 ~~mf~~~k~l~~hl-------~~~~~~vs  203 (237)
T COG5531         182 IDMFELTKPLSPHL-------IKYTIDVS  203 (237)
T ss_pred             hhhhhhhcccccce-------ecCccccc
Confidence            99999986666665       55665554

>smart00151 SWIB SWI complex, BAF60b domains

Probab=99.88  E-value=3.1e-23  Score=166.52  Aligned_cols=76  Identities=42%  Similarity=0.676  Sum_probs=74.0

Q ss_pred             CCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCC
Q psy18120        301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP  376 (392)
Q Consensus       301 P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P  376 (392)
                      +++|+||++|++|+|..+.||++|+++||+|||.|||||++|++.|+||+.|++|||++++.|++|+++|++||.|
T Consensus         2 ~~~~~ls~~L~~~lg~~~~tr~ev~~~lw~YIk~n~L~d~~~k~~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl~~   77 (77)
T smart00151        2 TKKVTLSPELAKVLGAPEMTRTEIIKRLWEYIKEHNLQDPQNKREILCDSKLEQIFGKDRMDMFEMNKLLTPHLIK   77 (77)
T ss_pred             CCcccCCHHHHHHhCCCcCcHHHHHHHHHHHHHHhcccCCccCCEEecCHHHHHHHCcCeecHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999999999999999999999999999999999999999999999975

>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []

Probab=99.87  E-value=1.2e-23  Score=168.50  Aligned_cols=74  Identities=41%  Similarity=0.792  Sum_probs=70.6

Q ss_pred             CCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCC
Q psy18120        301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLL  374 (392)
Q Consensus       301 P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL  374 (392)
                      |++|+||++|++++|..++||++|+++||+|||.|||||++|++.|+||+.|++|||++++.|++|+++|++||
T Consensus         2 ~k~~~ls~~L~~~lg~~~~sr~~v~~~lw~YIk~~~L~dp~~k~~I~cD~~L~~lf~~~~v~~~~i~~~l~~hl   75 (76)
T PF02201_consen    2 PKRFKLSPELAEFLGEDELSRSEVVKRLWQYIKENNLQDPKDKRIIICDEKLKKLFGKDSVNFFEIPKLLKPHL   75 (76)
T ss_dssp             EEEEHHHHHHHHHTT-SCEEHHHHHHHHHHHHHHTTSBESSSTTEEE-TTSHHHHHHTSECSEEETTHHHHHHH
T ss_pred             CCCccCCHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCCcccCceEecCHHHHHHhCCCeecHhhHHHHHHHhc
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999997

The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....

>KOG1946|consensus

Probab=99.75  E-value=1.2e-18  Score=166.75  Aligned_cols=80  Identities=30%  Similarity=0.539  Sum_probs=76.3

Q ss_pred             CcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCCCce
Q psy18120        302 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDPIV  381 (392)
Q Consensus       302 ~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~PI~  381 (392)
                      +.+.||+.|++++|.++.+|.+|++.||+|||+||||||.|++.|.||+.|+.|||..+|.+++|.++|.+||.......
T Consensus       102 kl~~ls~~L~~~~G~~~lsR~~vvk~iw~YIke~nLqDP~nkr~IlCDekL~~iF~~k~v~~fem~KLL~~H~~~~~d~~  181 (240)
T KOG1946|consen  102 KLIPLSPSLARFVGTSELSRTDVVKKIWAYIKEHNLQDPKNKREILCDEKLKSIFGKKRVGMFEMLKLLTKHFLKNQDMV  181 (240)
T ss_pred             cccccCHHHHhhcccccccHHHHHHHHHHHHHHhccCCccccCeeeeHHHHHHHhccCccceeeHHHHHHHhccCccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999887653

>PRK14724 DNA topoisomerase III; Provisional

Probab=99.68  E-value=2.4e-17  Score=184.09  Aligned_cols=73  Identities=29%  Similarity=0.525  Sum_probs=71.7

Q ss_pred             cccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120        303 QFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH  375 (392)
Q Consensus       303 r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~  375 (392)
                      .|+|||+||+|||..++||++||++||+|||.||||||+|++.|+||+.|+.|||++++.|++|+++|++||.
T Consensus       915 ~~~ls~~La~~lg~~~~~r~~v~~~lW~YIK~~~Lqdp~~k~~i~cD~~L~~vfg~~~~~~~~~~~~l~~hl~  987 (987)
T PRK14724        915 GLKPSAALAAVIGAEPVARPEVIKKLWDYIKANNLQDPADKRAINADAKLRPVFGKDQVTMFELAGIVGKHLS  987 (987)
T ss_pred             ccCCCHHHHHHhCCCcCCHHHHHHHHHHHHHHccCCCcccCCeeccchHHHHHhCCCcccHHHHHHHHHHhcC
Confidence            6999999999999999999999999999999999999999999999999999999999999999999999984

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated

Probab=99.14  E-value=2.5e-11  Score=134.81  Aligned_cols=74  Identities=22%  Similarity=0.413  Sum_probs=71.6

Q ss_pred             CcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120        302 LQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH  375 (392)
Q Consensus       302 ~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~  375 (392)
                      ..|.+|++|+.++|..+.+|.++++.||+|||.|+|||+++++.|+||+.|+++||++.+.|++++++|+.||.
T Consensus       786 ~~~~~S~~La~~~g~~~~sr~~~~~~lw~yIk~~~lqdp~~Kr~i~~d~kl~kvf~~~~~~~~~~~k~l~~hl~  859 (860)
T PRK06319        786 PLYTPSPALAAMIGAEPVGRGEATKKVWDYIKEHGLQSPENKKLIIPDSKLQGVIGPDPIDMFQLSKKLSQHLI  859 (860)
T ss_pred             cccccccccccccCcCccCchHHHHHHHHHHHHhcccCccccccCCCchhhhhhhCcCccchhhhHHHHHhhhc
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999985

>KOG1924|consensus

Probab=96.55  E-value=0.031  Score=61.88  Aligned_cols=31  Identities=19%  Similarity=0.101  Sum_probs=18.3

Q ss_pred             CCCcccCCHHHHHhhCCCccCHHHHHHHHHH
Q psy18120        300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQ  330 (392)
Q Consensus       300 ~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~  330 (392)
                      +|...+.-.+|+.+.-.+..+-.+|-+.+-+
T Consensus       875 ypd~l~F~ddl~hv~kaSrvnad~ikK~~~~  905 (1102)
T KOG1924|consen  875 YPDILKFPDDLEHVEKASRVNADEIKKNLQQ  905 (1102)
T ss_pred             ChhhhcchhhHHHHHhhccccHHHHHHHHHH
Confidence            5666666667777665555555555444443

>KOG1924|consensus

Probab=95.35  E-value=0.057  Score=59.93  Aligned_cols=16  Identities=38%  Similarity=0.384  Sum_probs=9.9

Q ss_pred             cccceEEEEEEEeecC
Q psy18120        159 KQKRKLRIFISNTFYP  174 (392)
Q Consensus       159 k~kR~LRIfIsNT~~~  174 (392)
                      |..+-|||.=|-|+.|
T Consensus       688 Kk~kel~ilDsKtaQn  703 (1102)
T KOG1924|consen  688 KKVKELRILDSKTAQN  703 (1102)
T ss_pred             hhhhhheecchHHHHH
Confidence            3445677777766643

>KOG2893|consensus

Probab=81.19  E-value=11  Score=37.20  Aligned_cols=7  Identities=43%  Similarity=0.368  Sum_probs=2.8

Q ss_pred             EEEEeec
Q psy18120        292 TILLLLD  298 (392)
Q Consensus       292 tI~L~~d  298 (392)
                      |++++.|
T Consensus       313 tklihpd  319 (341)
T KOG2893|consen  313 TKLIHPD  319 (341)
T ss_pred             eeeeCCc
Confidence            3444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
1uhr_A	93	Solution Structure Of The Swib Domain Of Mouse Brg1		2e-32
1v31_A	93	Solution Structure Of The SwibMDM2 DOMAIN OF THE Hy		1e-11

>pdb|1UHR|A Chain A, Solution Structure Of The Swib Domain Of Mouse Brg1- Associated Factor 60a Length = 93

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 70/80 (87%)
Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
           QP QFKLDPRLARLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   
Sbjct: 8   QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ 67
Query: 360 RMKFAEIPQRLNPLLHPPDP 379
           RMKF+EIPQRL+ LL PP+P
Sbjct: 68  RMKFSEIPQRLHALLMPPEP 87

>pdb|1V31|A Chain A, Solution Structure Of The SwibMDM2 DOMAIN OF THE Hypothetical Protein At5g14170 From Arabidopsis Thaliana Length = 93

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 46/71 (64%)
Query: 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360
           P +FKL   L  +LG+  +TRP II+A+W Y+K  KLQ+ ++  F NCD   +++F   +
Sbjct: 9   PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68
Query: 361 MKFAEIPQRLN 371
           +KF  + Q+++
Sbjct: 69  LKFTMVSQKIS 79
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	4e-27
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	1e-25
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	3e-12
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-04
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	4e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-04
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-04

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Length = 93

 Score =  102 bits (255), Expect = 4e-27
 Identities = 63/82 (76%), Positives = 70/82 (85%)

Query: 298 DYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFS 357
             QP QFKLDPRLARLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF 
Sbjct: 6   SGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFE 65

Query: 358 CPRMKFAEIPQRLNPLLHPPDP 379
             RMKF+EIPQRL+ LL PP+P
Sbjct: 66  SQRMKFSEIPQRLHALLMPPEP 87

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 93

 Score = 98.3 bits (245), Expect = 1e-25
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query: 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360
           P +FKL   L  +LG+  +TRP II+A+W Y+K  KLQ+ ++  F NCD   +++F   +
Sbjct: 9   PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68

Query: 361 MKFAEIPQRLNPLLHPPDP 379
           +KF  + Q+++  L PP P
Sbjct: 69  LKFTMVSQKISHHLSPPPP 87

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Length = 101

 Score = 61.4 bits (149), Expect = 3e-12
 Identities = 10/60 (16%), Positives = 21/60 (35%)

Query: 320 TRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP 379
           +R  +   + +YI    L D   ++ + CDK    +F    +   ++   L         
Sbjct: 36  SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 47.5 bits (112), Expect = 5e-06
 Identities = 12/98 (12%), Positives = 23/98 (23%)

Query: 6   QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
           Q     N  PL+ P    PP       M+                    + P Q+  +  
Sbjct: 13  QLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQ 72

Query: 66  MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
           +  +     ++         P   ++         P  
Sbjct: 73  IDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 16/87 (18%), Positives = 24/87 (27%), Gaps = 3/87 (3%)

Query: 18  YPPPSGPPMRYGNQNMA-MQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPVNPNI 76
           YP       +         Q  P   P   G   G  G+PP    P  G +      P  
Sbjct: 9   YPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLT--PAQ 66

Query: 77  ANKRPSDARPPNNLKNDYQHGPPGPGP 103
                   +   ++ + + H  P   P
Sbjct: 67  EQLHQQIDQATTSMNDMHLHNVPLVDP 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 12/98 (12%), Positives = 21/98 (21%)

Query: 6   QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
           Q      +   +    +   M   + +      P     P  P   G  +   QQP    
Sbjct: 60  QFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAP 119

Query: 66  MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
                        +  +   P + L            P
Sbjct: 120 AYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLP 157

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.4 bits (104), Expect = 6e-05
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 4/100 (4%)

Query: 5   FQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVP-PNQQPPY 63
           +  +    Q P ++ PP  P     +      P  G  P+    +   P     +QQ   
Sbjct: 16  YGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQ 75

Query: 64  TGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
                +     N+    P+    P       Q G P    
Sbjct: 76  ATTSMNDMHLHNVPLVDPNAYMQPQ---VPVQMGTPLQQQ 112

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 11/104 (10%), Positives = 20/104 (19%), Gaps = 1/104 (0%)

Query: 1   MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
           M  +   +   +   +  PP    P   G Q      +                +  +  
Sbjct: 30  MPPQDPAAAGMSYGQMGMPPQGAVPS-MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNV 88

Query: 61  PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGPI 104
           P         P  P          + P       Q        +
Sbjct: 89  PLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNM 132

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 1   MSQRFQGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQ 60
           M Q+   +    Q   +    +         N+ +     +       + G P     QQ
Sbjct: 56  MGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP--LQQQQ 113

Query: 61  PPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGP 101
            P        P      N RP +   P +L  +        
Sbjct: 114 QPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDL 154

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 11/99 (11%), Positives = 16/99 (16%), Gaps = 1/99 (1%)

Query: 1   MSQRFQGSQNTNQAP-LRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQ 59
           MS    G       P +       P     +Q +                   P      
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99

Query: 60  QPPYTGMRPSGPVNPNIANKRPSDARPPNNLKNDYQHGP 98
           Q P     P       +A                  +  
Sbjct: 100 QVPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQL 138

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 41.7 bits (97), Expect = 4e-04
 Identities = 9/98 (9%), Positives = 16/98 (16%)

Query: 6   QGSQNTNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG 65
               +  Q     P       +      +M            P        P Q      
Sbjct: 51  GAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQ 110

Query: 66  MRPSGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
            +      P       +  +    +   Y        P
Sbjct: 111 QQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELP 148

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 17/95 (17%), Positives = 23/95 (24%), Gaps = 2/95 (2%)

Query: 11  TNQAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTG--MRP 68
              + +  P  S              P     P PP P     G PP+     +      
Sbjct: 16  PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVLQRIL 75

Query: 69  SGPVNPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
            GP  P   +  P+               PP  G 
Sbjct: 76  RGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGR 110

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 40.5 bits (94), Expect = 6e-04
 Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 10/91 (10%)

Query: 13  QAPLRYPPPSGPPMRYGNQNMAMQPRPGFTPTPPGPRPGGPGVPPNQQPPYTGMRPSGPV 72
            +   +   SG          +    P  + T           PP   P      P  P 
Sbjct: 3   SSHHHHHHSSGLV-----PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57

Query: 73  NPNIANKRPSDARPPNNLKNDYQHGPPGPGP 103
             N  +    D+            GP GPG 
Sbjct: 58  AGNPPDTVTGDSVLQ-----RILRGPTGPGT 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
1uhr_A	93	SWI/SNF related, matrix associated, actin dependen	99.96
1v31_A	93	Hypothetical protein RAFL11-05-P19; SWI/SNF comple	99.96
1v32_A	101	AT5G08430, hypothetical protein RAFL09-47-K03; SWI	99.88
3dac_M	130	MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X	96.48
1ycq_A	107	MDM2, MDM2; anti-oncogene, DNA-binding, transcript	96.02
1z1m_A	119	Ubiquitin-protein ligase E3 MDM2; peptide-binding	95.87
2z5s_M	140	MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylat	95.77
3fea_A	100	MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, p	95.54
2axi_A	115	Ubiquitin-protein ligase E3 MDM2; drug design, pro	95.05

>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1

Probab=99.96  E-value=5e-31  Score=217.93  Aligned_cols=88  Identities=72%  Similarity=1.138  Sum_probs=86.6

Q ss_pred             eecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCC
Q psy18120        296 LLDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLH  375 (392)
Q Consensus       296 ~~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~  375 (392)
                      ++||+|++|+||++||+|||..++||++|+++||+|||.|||||++||+.|+||++|++|||+++|+|++|+++|++||.
T Consensus         4 ~~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~Lk~lfg~~~v~~~~~~klL~~Hl~   83 (93)
T 1uhr_A            4 GSSGQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLM   83 (93)
T ss_dssp             CCSSSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEE
T ss_pred             ccccCCCccCcCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCccccceeechHHHHHHhCCCcccHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEe
Q psy18120        376 PPDPIVIN  383 (392)
Q Consensus       376 P~~PI~I~  383 (392)
                      |++||+|+
T Consensus        84 p~~PI~i~   91 (93)
T 1uhr_A           84 PPEPSGPS   91 (93)
T ss_dssp             CSSCCCSS
T ss_pred             CCCCeeCC
Confidence            99999985

>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.96  E-value=2.6e-30  Score=213.61  Aligned_cols=87  Identities=36%  Similarity=0.720  Sum_probs=85.2

Q ss_pred             ecCCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCC
Q psy18120        297 LDYQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHP  376 (392)
Q Consensus       297 ~d~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P  376 (392)
                      ++|+|++|+||++||+|||..++||++|+++||+|||.|||||++||+.|+||++|++|||+++|.|++|+++|++||.|
T Consensus         5 ~~~~p~~~~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~~k~~I~cD~~L~~lfg~~~v~~~~~~klL~~Hl~p   84 (93)
T 1v31_A            5 SSGVPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSP   84 (93)
T ss_dssp             CCSSCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBC
T ss_pred             CCCCCCccccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcccCceeehhHHHHHHhCCCcccHHHHHHHHHHhcCC
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceEe
Q psy18120        377 PDPIVIN  383 (392)
Q Consensus       377 ~~PI~I~  383 (392)
                      ++||+|+
T Consensus        85 ~~Pi~~~   91 (93)
T 1v31_A           85 PPPSGPS   91 (93)
T ss_dssp             CCCSSCC
T ss_pred             CCCeeCC
Confidence            9999985

>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1

Probab=99.88  E-value=3e-23  Score=173.80  Aligned_cols=74  Identities=18%  Similarity=0.231  Sum_probs=70.5

Q ss_pred             cCCHHHHHhh---CC---CccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCC
Q psy18120        305 KLDPRLARLL---GV---HTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPD  378 (392)
Q Consensus       305 kLSpeLa~~L---G~---~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~  378 (392)
                      -+|++||+||   |.   .++||++|+++||+|||.||||||+||+.|+||++|++|||+++|.|++|+++|++||.+.+
T Consensus        15 w~S~eLa~fl~~iG~~~~~~~sR~eVvk~lW~YIK~nnLQdp~~Kr~I~cD~kLk~lFg~~~v~~~~m~klL~~Hl~~~~   94 (101)
T 1v32_A           15 WGSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQ   94 (101)
T ss_dssp             SSCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCC
T ss_pred             cCCHHHHHHHHHcCCCCccccCHHHHHHHHHHHHHhhcCcCcccCCeeeccHHHHHHHCCCcccHHHHHHHHHHHcCccc
Confidence            4799999999   88   57999999999999999999999999999999999999999999999999999999998753

>3dac_M MDM4 protein; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio}

Probab=96.48  E-value=0.0026  Score=54.85  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=65.1

Q ss_pred             ccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCcccccc---HHHHhhcCC
Q psy18120        304 FKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAE---IPQRLNPLL  374 (392)
Q Consensus       304 ~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~e---I~~lL~~HL  374 (392)
                      ++-.++|-.||   |  ....|..+++.-|=+||-.+.|.|+.+..+|.|- +.|.++||+++|.+.+   |.+.|.++|
T Consensus        25 Vrpk~~lL~iLq~aGA~~dvfT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~llGv~sFSVkdp~~L~~mL~~NL  104 (130)
T 3dac_M           25 VHPRAPLLQILKVAGAQEEVFTVKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPLYEMLKRNL  104 (130)
T ss_dssp             EEECHHHHHHHHHTTCCCSSEEHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTSCHHHHHHHHHHE
T ss_pred             cCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceeEeCCcccccccCCcceeecCcHHHHHHHHhhe
Confidence            55667788877   4  4678999999999999999999999999999995 6788999999999999   999999988


Q ss_pred             CCCC
Q psy18120        375 HPPD  378 (392)
Q Consensus       375 ~P~~  378 (392)
                      .+.-
T Consensus       105 v~~~  108 (130)
T 3dac_M          105 VILN  108 (130)
T ss_dssp             EEC-
T ss_pred             eccc
Confidence            7643

>1ycq_A MDM2, MDM2; anti-oncogene, DNA-binding, transcription regulation, nuclear protein, complex (oncogene protein/peptide), phosphorylation, activator; 2.30A {Xenopus laevis} SCOP: a.42.1.1

Probab=96.02  E-value=0.016  Score=48.49  Aligned_cols=74  Identities=24%  Similarity=0.340  Sum_probs=61.0

Q ss_pred             CcccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHH---HHhhc
Q psy18120        302 LQFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIP---QRLNP  372 (392)
Q Consensus       302 ~r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~---~lL~~  372 (392)
                      ..++-.+.|..+|   |  ...-|+.+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.+..   +.|.+
T Consensus        10 ~~VrPk~~LLklL~~~GA~~~~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml~~   89 (107)
T 1ycq_A           10 KLVQPTPLLLSLLKSAGAQKETFTMKEVIYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEPRRLYAMISR   89 (107)
T ss_dssp             CCBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTCSEEETTCHHHHHHHHHT
T ss_pred             cccCccHHHHHHHHHhccccceeeehhhhhhHHHHHhHHhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHH
Confidence            3566677888887   3  3578999999999999999999999999999996 667999999999988866   55555


Q ss_pred             CCC
Q psy18120        373 LLH  375 (392)
Q Consensus       373 HL~  375 (392)
                      .|.
T Consensus        90 nLv   92 (107)
T 1ycq_A           90 NLV   92 (107)
T ss_dssp             TEE
T ss_pred             hcc
Confidence            443

>1z1m_A Ubiquitin-protein ligase E3 MDM2; peptide-binding groove, psudosymmetry, alpha-beta domains; NMR {Homo sapiens}

Probab=95.87  E-value=0.013  Score=49.95  Aligned_cols=71  Identities=25%  Similarity=0.435  Sum_probs=56.7

Q ss_pred             cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHHHHhhcC
Q psy18120        303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIPQRLNPL  373 (392)
Q Consensus       303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~~lL~~H  373 (392)
                      .++-.++|-.||   |  ...-|..+|+.-|=+||-.+.|.|+.+..+|.|. +.|-++||++.|.+.|-..+..-|
T Consensus        27 ~VrPk~~LLkiLq~aGA~~~vfT~keV~~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~~ml  103 (119)
T 1z1m_A           27 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMI  103 (119)
T ss_dssp             CCCCSTTSHHHHHHHTCCCSCCCTTHHHHHHHHHHHTTTCSCSSSSCEECCTTSHHHHHSCCSCEETTCHHHHHHHH
T ss_pred             cccccHHHHHHHHHhccccceeechheeehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHH
Confidence            445555566665   4  3568999999999999999999999999999996 667999999999988755544433

>2z5s_M MDM4 protein, zebrafish MDMX; MDMX, MDM4, acetylation, activator, anti-oncogene, apoptosis, cell cycle, cytoplasm, disease mutation, DNA- binding; 2.30A {Danio rerio} PDB: 2z5t_M

Probab=95.77  E-value=0.012  Score=51.07  Aligned_cols=73  Identities=19%  Similarity=0.287  Sum_probs=61.0

Q ss_pred             cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHH---HHhhcC
Q psy18120        303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIP---QRLNPL  373 (392)
Q Consensus       303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~---~lL~~H  373 (392)
                      .++-.++|-.||   |  ...-|+-+|+.-|=+||-.+.|.|+.+..+|.|. +.|-+||||+.|.+.+..   +.|.+-
T Consensus        23 ~VrPk~~LLkiLq~aGA~~~~fT~keVm~YLGqYIm~KqLYD~~~qhiV~C~~D~LG~l~Gv~sFSVKdp~~ly~ML~~N  102 (140)
T 2z5s_M           23 QVHPRAPLLQILKVAGAQEEVFTLKEVMHYLGQYIMMKQLYDKQRQHIVHCHDDPLGELLEVGSFSVKNPSPVYEMLKRN  102 (140)
T ss_dssp             CBEECHHHHHHHHHTTCCCSCBCHHHHHHHHHHHHHHHTCBCSSSTTEEECTTSHHHHHHTSSEEETTBCHHHHHHHHHH
T ss_pred             eecCcHHHHHHHHHhCcccceeeHHHHHHHHHHHHHHhhhcccccCcEEeeCCcccccccCccceeecCcHHHHHHHHHh
Confidence            567778888888   4  4678999999999999999999999999999996 667999999999988755   555544


Q ss_pred             CC
Q psy18120        374 LH  375 (392)
Q Consensus       374 L~  375 (392)
                      |.
T Consensus       103 Lv  104 (140)
T 2z5s_M          103 LV  104 (140)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>3fea_A MDM4 protein; HDMX, HDM4,human MDM4, human MDMX, protein-protein interaction, metal-binding; HET: PM3 6CW; 1.33A {Homo sapiens} SCOP: a.42.1.0 PDB: 3fe7_A* 3u15_A* 2vyr_A 3lbj_E* 3fdo_A 3dab_A 3jzp_A 3jzo_A 3jzq_A 3eqy_A

Probab=95.54  E-value=0.0094  Score=49.45  Aligned_cols=75  Identities=20%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccc---cHHHHhhcC
Q psy18120        303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFA---EIPQRLNPL  373 (392)
Q Consensus       303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~---eI~~lL~~H  373 (392)
                      .++-.++|-.||   |  ....|..+++.-|=+||-.+.|-|+.+..+|.|. +.|-++||+++|.+.   .|.+.|.+|
T Consensus        15 ~Vrpk~~lL~iLq~aGA~~d~fT~keVm~YLgqYI~~KqLyd~~~qhiV~C~~D~LG~l~G~~sFsvkdp~~l~~ml~~n   94 (100)
T 3fea_A           15 QVRPKLPLLKILHAAGAQGEMFTVKEVMHYLGQYIMVKQLYDQQEQHMVYCGGDLLGELLGRQSFSVKDPSPLYDMLRKN   94 (100)
T ss_dssp             CBEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHTTCEETTEEEEEECTTSHHHHHHTCSEEETTCCHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHhccCcceeehHHHHHHHHHhhhhhhccCccccceEEeCCCccccccCCcceeecCchHHHHHHHhh
Confidence            466678888887   4  4678999999999999999999999999999996 678899999999988   688888888


Q ss_pred             CCCC
Q psy18120        374 LHPP  377 (392)
Q Consensus       374 L~P~  377 (392)
                      |...
T Consensus        95 Lv~~   98 (100)
T 3fea_A           95 LVTL   98 (100)
T ss_dssp             EEC-
T ss_pred             ceec
Confidence            7543

>2axi_A Ubiquitin-protein ligase E3 MDM2; drug design, protein-protein interactions, ligase, LIGA inhibitor complex; HET: 6CW MPO; 1.40A {Homo sapiens} SCOP: a.42.1.1 PDB: 1ycr_A 2gv2_A* 1t4f_M* 3jzr_A 3g03_A 3tu1_A* 3jzk_A* 1t4e_A* 3lbl_A* 4dij_A* 3lbk_A* 3v3b_A* 3jzs_A 3eqs_A 3iux_A* 3iwy_A* 3lnj_A* 3lnz_A 1rv1_A* 1ttv_A*

Probab=95.05  E-value=0.019  Score=48.67  Aligned_cols=68  Identities=26%  Similarity=0.450  Sum_probs=57.0

Q ss_pred             cccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCccccccHHHHh
Q psy18120        303 QFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAEIPQRL  370 (392)
Q Consensus       303 r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~eI~~lL  370 (392)
                      .++-.+.|..||   |  ...-|..+|+.-+=+||-.+.|.|+.+..+|.|. +.|-++|||+.|.+.+-..+.
T Consensus        11 ~VrPk~~LLklLq~~GA~~~vfT~keVm~YLgqYIm~KqLyd~~~qhiV~C~~D~LG~l~g~~~Fsvkdp~~l~   84 (115)
T 2axi_A           11 LVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIY   84 (115)
T ss_dssp             EEEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHH
T ss_pred             ccCccHHHHHHHHHhccccceeechhheehhhhhhhHhhhcccccCcEEeeCCcccccccCccceeecCcHHHH
Confidence            456677788877   3  3567999999999999999999999999999996 667999999999988754443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d1uhra_	93	a.42.1.1 (A:) SWI/SNF related regulator of chromat	1e-25
d1v31a_	93	a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl	1e-22
d1v32a_	101	a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl	2e-13

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (242), Expect = 1e-25
 Identities = 63/80 (78%), Positives = 70/80 (87%)

Query: 300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCP 359
           QP QFKLDPRLARLLG+HTQTRPVII ALWQYIKTHKLQD HEREF+ CDK+ +QIF   
Sbjct: 8   QPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQ 67

Query: 360 RMKFAEIPQRLNPLLHPPDP 379
           RMKF+EIPQRL+ LL PP+P
Sbjct: 68  RMKFSEIPQRLHALLMPPEP 87

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 93

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.1 bits (221), Expect = 1e-22
 Identities = 31/79 (39%), Positives = 50/79 (63%)

Query: 301 PLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPR 360
           P +FKL   L  +LG+  +TRP II+A+W Y+K  KLQ+ ++  F NCD   +++F   +
Sbjct: 9   PEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEK 68

Query: 361 MKFAEIPQRLNPLLHPPDP 379
           +KF  + Q+++  L PP P
Sbjct: 69  LKFTMVSQKISHHLSPPPP 87

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 101

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 10/60 (16%), Positives = 21/60 (35%)

Query: 320 TRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP 379
           +R  +   + +YI    L D   ++ + CDK    +F    +   ++   L         
Sbjct: 36  SRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d1uhra_	93	SWI/SNF related regulator of chromatin (BRG1-assoc	99.94
d1v31a_	93	Hypothetical protein AT5G14170 (rafl11-05-p19) {Th	99.93
d1v32a_	101	Hypothetical protein AT5G08430 (rafl09-47-k03) {Th	99.81
d1ttva_	107	MDM2 {African clawed frog (Xenopus laevis) [TaxId:	97.65
d2axia1	85	MDM2 {Human (Homo sapiens) [TaxId: 9606]}	97.62

>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: SWI/SNF related regulator of chromatin (BRG1-associated factor 60a)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6.4e-28  Score=197.48  Aligned_cols=82  Identities=77%  Similarity=1.266  Sum_probs=80.2

Q ss_pred             CCCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCC
Q psy18120        299 YQPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPD  378 (392)
Q Consensus       299 ~~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~  378 (392)
                      .+|++|+||++||+|||..++||++|+++||+|||.|||||++|+++|+||+.|++|||+++|+|++|+++|++||.|++
T Consensus         7 g~p~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp~nkr~I~cD~~L~~lfg~~~v~~~~l~~~L~~Hl~p~e   86 (93)
T d1uhra_           7 GQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMPPE   86 (93)
T ss_dssp             SSCCEEEECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEECSS
T ss_pred             CCCCCCCCCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCCCCCCEEecCHHHHHHhCCCeecHHHHHHHHHhhCCCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cc
Q psy18120        379 PI  380 (392)
Q Consensus       379 PI  380 (392)
                      |.
T Consensus        87 P~   88 (93)
T d1uhra_          87 PS   88 (93)
T ss_dssp             CC
T ss_pred             CC
Confidence            85

>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G14170 (rafl11-05-p19)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3.6e-27  Score=192.91  Aligned_cols=82  Identities=38%  Similarity=0.793  Sum_probs=79.9

Q ss_pred             CCCcccCCHHHHHhhCCCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCCC
Q psy18120        300 QPLQFKLDPRLARLLGVHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP  379 (392)
Q Consensus       300 ~P~r~kLSpeLa~~LG~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~P  379 (392)
                      .|++|+||++||+|||..+.||++|+++||+|||.|||||++|++.|+||+.|++|||+++|.|++|+++|++||.|++|
T Consensus         8 ~~~~~~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqd~~nkr~I~~D~~L~~lfg~~~v~~~~l~~~L~~Hl~p~~P   87 (93)
T d1v31a_           8 VPEKFKLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPNDPSFFNCDAALQKVFGEEKLKFTMVSQKISHHLSPPPP   87 (93)
T ss_dssp             SCCCEECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSSCSSEEECCSHHHHHSCSSEEETTTTHHHHHHHCBCCCC
T ss_pred             CcCCccCCHHHHHHHCcCcCcHHHHHHHHHHHHHHhCCCCCCCCCEEecCHHHHHHhCCCcccHHHHHHHHHHhCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ce
Q psy18120        380 IV  381 (392)
Q Consensus       380 I~  381 (392)
                      -.
T Consensus        88 ~~   89 (93)
T d1v31a_          88 SG   89 (93)
T ss_dssp             SS
T ss_pred             CC
Confidence            63

>d1v32a_ a.42.1.1 (A:) Hypothetical protein AT5G08430 (rafl09-47-k03) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: Hypothetical protein AT5G08430 (rafl09-47-k03)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.81  E-value=5.3e-21  Score=158.20  Aligned_cols=74  Identities=16%  Similarity=0.210  Sum_probs=69.3

Q ss_pred             CCHHHHHhhC------CCccCHHHHHHHHHHHHHhccCCCcCCCceeecchhHHhhcCCCccccccHHHHhhcCCCCCCC
Q psy18120        306 LDPRLARLLG------VHTQTRPVIISALWQYIKTHKLQDAHEREFINCDKFFEQIFSCPRMKFAEIPQRLNPLLHPPDP  379 (392)
Q Consensus       306 LSpeLa~~LG------~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cDe~Lr~LFg~~~i~f~eI~~lL~~HL~P~~P  379 (392)
                      .|++|++|||      .++++|.+|++.||+|||+|||||+.||+.|+||+.|++|||+++|+|++|+++|++||...+.
T Consensus        16 ~S~eL~~FL~~~g~~~~~~~sR~eVtk~iw~YIK~nnLqdp~nkr~I~~D~~L~~Lfg~~~v~~f~i~k~l~~H~~~~~~   95 (101)
T d1v32a_          16 GSRQLIEFLHSLGKDTSEMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKENQD   95 (101)
T ss_dssp             SCHHHHHHHHHHTCCCSSCCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCSCCC
T ss_pred             CCHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHHHhcCCCCccCCEEccCHHHHHHhCCCcccHHHHHHHHHHHcCCccc
Confidence            7999999985      2678999999999999999999999999999999999999999999999999999999987543

>d1ttva_ a.42.1.1 (A:) MDM2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.65  E-value=3.6e-05  Score=62.12  Aligned_cols=76  Identities=24%  Similarity=0.352  Sum_probs=66.4

Q ss_pred             CCcccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeec-chhHHhhcCCCcccccc---HHHHhh
Q psy18120        301 PLQFKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINC-DKFFEQIFSCPRMKFAE---IPQRLN  371 (392)
Q Consensus       301 P~r~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~c-De~Lr~LFg~~~i~f~e---I~~lL~  371 (392)
                      -..++-.|.|-.+|   |  ...-|.-+|+.-|=+||..++|.|+.+..+|.| |+.|-++||+++|...+   |.++|.
T Consensus         9 ~~lVrPkp~LL~~L~~~GA~~~~fT~keVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~llgv~sFsVke~r~l~~ml~   88 (107)
T d1ttva_           9 EKLVQPTPLLLSLLKSAGAQKETFTMKEVLYHLGQYIMAKQLYDEKQQHIVHCSNDPLGELFGVQEFSVKEHRRIYAMIS   88 (107)
T ss_dssp             CCCEEECHHHHHHHHHTTCCSSCBCHHHHHHHHHHHHHHHTCBCSSCTTEECCSSCHHHHHHTCSCEETTCHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcCCCceeecCcHHHHHHHH
Confidence            33567788999988   4  467899999999999999999999999999999 56799999999999888   788899


Q ss_pred             cCCCC
Q psy18120        372 PLLHP  376 (392)
Q Consensus       372 ~HL~P  376 (392)
                      ++|.+
T Consensus        89 rnLv~   93 (107)
T d1ttva_          89 RNLVS   93 (107)
T ss_dssp             TTEEE
T ss_pred             hhhhc
Confidence            99854

>d2axia1 a.42.1.1 (A:25-109) MDM2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SWIB/MDM2 domain
superfamily: SWIB/MDM2 domain
family: SWIB/MDM2 domain
domain: MDM2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=2e-05  Score=61.34  Aligned_cols=71  Identities=28%  Similarity=0.461  Sum_probs=62.4

Q ss_pred             ccCCHHHHHhh---C--CCccCHHHHHHHHHHHHHhccCCCcCCCceeecc-hhHHhhcCCCcccccc---HHHHhhcCC
Q psy18120        304 FKLDPRLARLL---G--VHTQTRPVIISALWQYIKTHKLQDAHEREFINCD-KFFEQIFSCPRMKFAE---IPQRLNPLL  374 (392)
Q Consensus       304 ~kLSpeLa~~L---G--~~e~TR~eiv~aLW~YIK~n~LQDp~dk~~I~cD-e~Lr~LFg~~~i~f~e---I~~lL~~HL  374 (392)
                      ++-.|.|-.+|   |  ...-|.-+|+.-|=+||..++|.|+.+..+|.|- +.|-++||+++|...+   |..+|.+||
T Consensus         4 VrPkp~Ll~~L~~~GA~~~~fT~kqVm~yLgqYIm~K~LyD~~~qhiV~C~~D~LG~l~gv~sFsVk~~r~l~~ml~rnL   83 (85)
T d2axia1           4 VRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRKIYTMIYRNL   83 (85)
T ss_dssp             EEECHHHHHHHHHTTCCCSCEEHHHHHHHHHHHHHHHTCEETTEEEEEECTTSHHHHHHSSSEEETTCHHHHHHHHHTTE
T ss_pred             ccCcHHHHHHHHHcCCCcceeeHHHHHHHHHHHHHHHHhcCcccCceEecCCchHHhhcCCCceeecCcHHHHHHHHhcc
Confidence            34567888887   4  4678999999999999999999999999999994 6699999999999998   888998886