Psyllid ID: psy18158

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650----
MTFTQHSNSMQTSKPHQDGKPQSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTEDNSLSQVYGLNDSVADSIDNSLDDLSSTSPHPTPPVKVLSDCFNYLLLLKFSLKLVFYVGPF
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccccccccccEEEEEEccccccHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEcccccHHHHHHHcccccccccccccHHHHHcccHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEccccccccccHHHcHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccEEEEEccc
cccccccccccccccccccccccccccEEccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccEEEEEccEEcccccccccccEEEEccccccHHHHHHHHHHHHHccccHHccccccccEEEEEEEEEccEEEEEHHEHEccccccccccccccHHHccccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccHHHHHEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHcccccccccccccccccEEEEEEEEEEEEcccccccccEEcccccHHHHHHHHHHHHHcccccEEEEEEEEccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccHHHHHHHHHcEEEEEEcccc
mtftqhsnsmqtskphqdgkpqsqapvtygmttalnlsppnqldlQRTRELAEclkpynvsetdEELSSRMEVLSKLNNLVKEWIKEVSiaknipptvaekvggkiytfgsyrlgvhhkgadidalcvaprhvdradyFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALkeipddmdlrddmllknldqkcvrslngcrvtdEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFsqwkwpqpvllkkpdnvnlgfpvwdprvnvadryhlmpiitpaypqqnstfnvSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLfetpnfftKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIgnlernphinlahvnpecytdttgviangsgspeitaegkeeggentsppvsgvASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKqlseylpahmlkkdkktksgdqntsakkrksdqaldelgdksrprldsdsnslsdkvnnisnngdqsssectednslsqvyglndsvadsidnslddlsstsphptppvkvLSDCFNYLLLLKFSLKLVFYVGPF
mtftqhsnsmqtskphqdgkpqSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLkpynvsetdeelssRMEVLSKLNNLVKEWIKevsiaknipptvaekvgGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNldqkcvrslngcrvtdeilrlvpnienfRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPqpvllkkpdnvnlgfpVWDPRVNVADRYHLMPiitpaypqqnsTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGkeeggentsppVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKkqlseylpahmlkkdkktksgdqntsakkrksdqaldelgdksrprldsdsnslsdkvnnisnngdqsssecTEDNSLSQVYGLNDSVADSIDNSLDDLSSTSPHPTPPVKVLSDCFNYLLLLKFSLKLVFYVGPF
MTFTQHSNSMQTSKPHQDGKPQSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPddmdlrddmllknldQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTEDNSLSQVYGLNDSVAdsidnslddlsstsPHPTPPVKVLSDCFNyllllkfslklvfyvGPF
************************************************************************VLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIA*************************GVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQ******************************************************************************************************************************VKVLSDCFNYLLLLKFSLKLVFYVG**
*********************************ALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKN**PTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSP***************PPVSGVASMWFIGLDFI***VILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYL*****************************************************************************************************************LLLKFSLKLVFYVGPF
***********************QAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYN**********RMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEIT*************PVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLK************************ELGDKS*********SLSDKVNNISN*************SLSQVYGLNDSVADSIDNSLDDLSSTSPHPTPPVKVLSDCFNYLLLLKFSLKLVFYVGPF
**************************VTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEIT*************PVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHM***********************************************************************************************TPPVKVLSDCFNYLLLLKFSLKLVFYVGPF
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MTFTQHSNSMQTSKPHQDGKPQSQAPVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTEDNSLSQVYGLNDSVADSIDNSLDDLSSTSPHPTPPVKVLSDCFNYLLLLKFSLKLVFYVGPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query654 2.2.26 [Sep-21-2011]
Q9BWT3 736 Poly(A) polymerase gamma yes N/A 0.825 0.733 0.581 0.0
Q6PCL9 739 Poly(A) polymerase gamma yes N/A 0.790 0.699 0.598 0.0
Q61183 739 Poly(A) polymerase alpha no N/A 0.798 0.706 0.597 0.0
P25500 739 Poly(A) polymerase alpha no N/A 0.755 0.668 0.618 0.0
P51003 745 Poly(A) polymerase alpha no N/A 0.862 0.757 0.567 0.0
Q9NRJ5636 Poly(A) polymerase beta O no N/A 0.746 0.767 0.604 1e-180
P51004 715 Poly(A) polymerase alpha- N/A N/A 0.741 0.678 0.608 1e-180
Q9WVP6641 Poly(A) polymerase beta O no N/A 0.756 0.772 0.595 1e-179
P51006400 Poly(A) polymerase type 3 N/A N/A 0.553 0.905 0.706 1e-148
Q54J73 809 Poly(A) polymerase OS=Dic yes N/A 0.781 0.631 0.437 1e-127
>sp|Q9BWT3|PAPOG_HUMAN Poly(A) polymerase gamma OS=Homo sapiens GN=PAPOLG PE=1 SV=2 Back     alignment and function desciption
 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/571 (58%), Positives = 415/571 (72%), Gaps = 31/571 (5%)

Query: 29  YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
           YG+T+ ++L+ P ++D   T++L + +KP+ V E +EEL+ R+ VL KLNNLVKEWI +V
Sbjct: 19  YGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNLVKEWISDV 78

Query: 89  SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
           S +KN+PP+V   VGGKI+TFGSYRLGVH KGADIDALCVAPRHV+R+D+F SFFEKLK 
Sbjct: 79  SESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKH 138

Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
            D + +LRAVE+AFVPVIK  FDGIEID++FARLA++ I D++DLRDD  L++LD +C+R
Sbjct: 139 QDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIR 198

Query: 209 SLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQL 268
           SLNGCRVTDEIL LVPN E FRL LR +KLWAK+ GIYSN+LG+LGGVSWAMLVAR CQL
Sbjct: 199 SLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQL 258

Query: 269 YPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPA 328
           YPNAAASTLV KFFLVFS+W+WP PVLLK+P+  NL  PVWDPRVN +DRYHLMPIITPA
Sbjct: 259 YPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPA 318

Query: 329 YPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIA 388
           YPQQNST+NVS STRT+M EEFKQG  ++++I  GK+ W KL E PNFF KYRHY+VL A
Sbjct: 319 YPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSKLLEPPNFFQKYRHYIVLTA 378

Query: 389 SSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEITA 448
           S+ + E+ LEW GL+ESK+R L+GNLERN  I LAHVNP+ +                  
Sbjct: 379 SASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSFPG---------------- 422

Query: 449 EGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTNAVHWQATQSKM 504
             KE   +N         SMWF+G+ F     A +V ++LTYDIQ FT+ V+ QA    M
Sbjct: 423 -NKEHHKDN------NYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINM 475

Query: 505 MKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQNTSAKKRKSDQALDELGDKSRPR 564
           +K+GMKIE  HVKKKQL  YLPA +L+K KK    D N S+   +S +   +       R
Sbjct: 476 LKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSDVNRSSGGLQSKRLSLDSSCLDSSR 535

Query: 565 LDSDSNSLSDKVNNISNNGDQSSSECTEDNS 595
            D+D+ +     N+ ++  D  S   TE NS
Sbjct: 536 -DTDNGT---PFNSPASKSDSPSVGETERNS 562
Responsible for the post-transcriptional adenylation of the 3'-terminal of mRNA precursors and several small RNAs including signal recognition particle (SRP) RNA, nuclear 7SK RNA, U2 small nuclear RNA, and ribosomal 5S RNA.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 1EC: 9
>sp|Q6PCL9|PAPOG_MOUSE Poly(A) polymerase gamma OS=Mus musculus GN=Papolg PE=1 SV=1 Back     alignment and function description
>sp|Q61183|PAPOA_MOUSE Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4 Back     alignment and function description
>sp|P25500|PAPOA_BOVIN Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3 Back     alignment and function description
>sp|P51003|PAPOA_HUMAN Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4 Back     alignment and function description
>sp|Q9NRJ5|PAPOB_HUMAN Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1 Back     alignment and function description
>sp|P51004|PAPO1_XENLA Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-a PE=2 SV=1 Back     alignment and function description
>sp|Q9WVP6|PAPOB_MOUSE Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2 Back     alignment and function description
>sp|P51006|PAPO3_XENLA Poly(A) polymerase type 3 (Fragment) OS=Xenopus laevis PE=2 SV=1 Back     alignment and function description
>sp|Q54J73|PAP_DICDI Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query654
322802531592 hypothetical protein SINV_14294 [Solenop 0.779 0.861 0.664 0.0
307201288609 Poly(A) polymerase gamma [Harpegnathos s 0.818 0.878 0.642 0.0
383862407616 PREDICTED: poly(A) polymerase gamma [Meg 0.779 0.827 0.667 0.0
307183537603 Poly(A) polymerase gamma [Camponotus flo 0.828 0.898 0.648 0.0
380022244619 PREDICTED: poly(A) polymerase gamma [Api 0.868 0.917 0.636 0.0
328792143619 PREDICTED: poly(A) polymerase gamma [Api 0.868 0.917 0.636 0.0
340709674617 PREDICTED: poly(A) polymerase gamma-like 0.779 0.826 0.663 0.0
350422462610 PREDICTED: poly(A) polymerase gamma-like 0.779 0.836 0.661 0.0
332018332553 Poly(A) polymerase gamma [Acromyrmex ech 0.743 0.878 0.696 0.0
321469973630 hypothetical protein DAPPUDRAFT_318160 [ 0.824 0.855 0.635 0.0
>gi|322802531|gb|EFZ22846.1| hypothetical protein SINV_14294 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 375/564 (66%), Positives = 434/564 (76%), Gaps = 54/564 (9%)

Query: 28  TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
           T GMT+A++++ P  +D+ RT EL E LKPYNV E++EEL+ RME+LSKLN LVK+WI++
Sbjct: 14  TLGMTSAISVAEPKPMDIARTNELKEALKPYNVFESEEELNHRMEILSKLNALVKQWIRD 73

Query: 88  VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
            SIA+N+PP VAE+VGGKIYTFGSYRLGVHHKGADIDALCV PRH+ RADYF+SFF+ L+
Sbjct: 74  TSIARNMPPNVAEQVGGKIYTFGSYRLGVHHKGADIDALCVVPRHIYRADYFTSFFDLLR 133

Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
             +EVTDLRAVEEAFVPVIKMNFDGIEIDMLFA+L LKEIPD MDLRDDMLLKNLDQKCV
Sbjct: 134 MQEEVTDLRAVEEAFVPVIKMNFDGIEIDMLFAKLTLKEIPDSMDLRDDMLLKNLDQKCV 193

Query: 208 RSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267
           RSLNGCRVTDEILRLVPNIENFRLALR IKLWAK+HGIYSNVLGYLGGVSWAMLVAR CQ
Sbjct: 194 RSLNGCRVTDEILRLVPNIENFRLALRAIKLWAKRHGIYSNVLGYLGGVSWAMLVARTCQ 253

Query: 268 LYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITP 327
           LYPNA A+TL+ KFFLVFSQWKWPQPVLLK+PDNVNLG+PVWDPRVNV+DRYHLMPIITP
Sbjct: 254 LYPNAVAATLIEKFFLVFSQWKWPQPVLLKQPDNVNLGYPVWDPRVNVSDRYHLMPIITP 313

Query: 328 AYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLI 387
           AYPQQNSTFNVSISTRTIMQE F+ G  I+E+I  GK  WDKLFE PNFF KY+HY+VL+
Sbjct: 314 AYPQQNSTFNVSISTRTIMQEAFENGLAITEEIIMGKATWDKLFEPPNFFGKYKHYIVLL 373

Query: 388 ASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVIANGSGSPEIT 447
           A S++AEDQLEWCGL+ESK+RHLIG LERNPHI LAHVNPE +             P + 
Sbjct: 374 AKSLTAEDQLEWCGLVESKIRHLIGMLERNPHITLAHVNPEAF-------------PPLN 420

Query: 448 AEGKEEGGENTSPPVSGVASMWFIGLDFI----------AANVILNLTYDIQHFTNAVHW 497
            E  +              SMWFIGL F             N+ ++LTYDI+ F + V  
Sbjct: 421 PESGKH------------CSMWFIGLSFSKCEKSEKSEKGENINVDLTYDIKSFVDTVER 468

Query: 498 QATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSG------------------ 539
           QA Q  M K+GM IE +HVK+K L+ Y+   +LK+++K  SG                  
Sbjct: 469 QAEQINMFKEGMWIEAKHVKRKDLNTYVSPSLLKRERKVSSGVHRNGNIAGNGNSGSVSP 528

Query: 540 -DQNTSAKKRKSDQALDELGDKSR 562
            +Q  ++KKR SDQ LD  G K R
Sbjct: 529 RNQGDTSKKRLSDQTLDACGKKRR 552

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307201288|gb|EFN81136.1| Poly(A) polymerase gamma [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383862407|ref|XP_003706675.1| PREDICTED: poly(A) polymerase gamma [Megachile rotundata] Back     alignment and taxonomy information
>gi|307183537|gb|EFN70300.1| Poly(A) polymerase gamma [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380022244|ref|XP_003694961.1| PREDICTED: poly(A) polymerase gamma [Apis florea] Back     alignment and taxonomy information
>gi|328792143|ref|XP_393202.3| PREDICTED: poly(A) polymerase gamma [Apis mellifera] Back     alignment and taxonomy information
>gi|340709674|ref|XP_003393427.1| PREDICTED: poly(A) polymerase gamma-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350422462|ref|XP_003493171.1| PREDICTED: poly(A) polymerase gamma-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332018332|gb|EGI58937.1| Poly(A) polymerase gamma [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|321469973|gb|EFX80951.1| hypothetical protein DAPPUDRAFT_318160 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query654
FB|FBgn0015949659 hrg "hiiragi" [Drosophila mela 0.896 0.889 0.573 5.7e-178
ZFIN|ZDB-GENE-040426-1256744 papolg "poly(A) polymerase gam 0.614 0.540 0.669 7e-169
UNIPROTKB|F1NKG9737 PAPOLA "Uncharacterized protei 0.629 0.559 0.660 6.3e-168
UNIPROTKB|Q9BWT3736 PAPOLG "Poly(A) polymerase gam 0.614 0.546 0.659 6.3e-168
MGI|MGI:2442119739 Papolg "poly(A) polymerase gam 0.614 0.543 0.656 8e-168
RGD|1310337739 Papolg "poly(A) polymerase gam 0.614 0.543 0.659 2.1e-167
UNIPROTKB|P51003745 PAPOLA "Poly(A) polymerase alp 0.629 0.553 0.658 4.4e-167
MGI|MGI:109301739 Papola "poly (A) polymerase al 0.629 0.557 0.658 4.4e-167
UNIPROTKB|G3XAH6724 PAPOLA "Poly(A) polymerase alp 0.629 0.569 0.658 4.4e-167
UNIPROTKB|P25500739 PAPOLA "Poly(A) polymerase alp 0.629 0.557 0.658 9.1e-167
FB|FBgn0015949 hrg "hiiragi" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1728 (613.3 bits), Expect = 5.7e-178, P = 5.7e-178
 Identities = 344/600 (57%), Positives = 428/600 (71%)

Query:     8 NSMQTSKPHQ--DGKPQSQAPVT--YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSET 63
             NS  T + H   +G   S  P     GMT+A++L+ P   DLQRT EL   L+PYNV E+
Sbjct:     3 NSEPTHRQHHQHNGNSTSGGPPAKQLGMTSAISLAEPRPEDLQRTDELRGSLEPYNVFES 62

Query:    64 DEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADI 123
              +EL+ RME+L+KLN LVK+W+KE+S++KN+P + AEK+GGKIYTFGSYRLGVHHKGADI
Sbjct:    63 QDELNHRMEILAKLNTLVKQWVKEISVSKNMPESAAEKLGGKIYTFGSYRLGVHHKGADI 122

Query:   124 DALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLA 183
             DALCVAPR+++R DYF SFFE LK   EVT+ R+VEEAFVPVIKMNFDGIEID+LFARL+
Sbjct:   123 DALCVAPRNIERTDYFQSFFEVLKKQPEVTECRSVEEAFVPVIKMNFDGIEIDLLFARLS 182

Query:   184 LKEIPXXXXXXXXXXXXXXXQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKH 243
             LKEIP                + VRSLNGCRVTDEIL LVPNIENFRLALRTIKLWAKKH
Sbjct:   183 LKEIPDDFDLRDDNLLRNLDHRSVRSLNGCRVTDEILALVPNIENFRLALRTIKLWAKKH 242

Query:   244 GIYSNVLGYLGGVSWAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVN 303
             GIYSN LGY GGV+WAMLVAR CQLYPNAAA+TLV KFFLVFS+WKWP PVLLK PDNVN
Sbjct:   243 GIYSNSLGYFGGVTWAMLVARTCQLYPNAAAATLVHKFFLVFSRWKWPNPVLLKHPDNVN 302

Query:   304 LGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNG 363
             L F VWDPRVN +DRYHLMPIITPAYPQQNSTFNVS ST+ ++  EF +G  I+++I  G
Sbjct:   303 LRFQVWDPRVNASDRYHLMPIITPAYPQQNSTFNVSESTKKVILTEFNRGMNITDEIMLG 362

Query:   364 KTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLA 423
             +  W++LFE P+FF +YRH++VL+ +S +A+D LEWCGL+ESKVR LI NLERNPHI LA
Sbjct:   363 RIPWERLFEAPSFFYRYRHFIVLLVNSQTADDHLEWCGLVESKVRLLISNLERNPHIALA 422

Query:   424 HVNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSG-VASMWFIGLDFIAA-NVI 481
             HVNP+C+    G  AN S +     +  ++   N S   S    SMWFIGL+F  + N+ 
Sbjct:   423 HVNPKCFEFKKGQSANNSQNNSGNEDDLKQSQGNQSAVTSAPFCSMWFIGLEFERSENLN 482

Query:   482 LNLTYDIQHFTNAVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKKTKSGDQ 541
             ++LT  IQ+FT  V       KM+K+GM I+ RHVK+KQLS YL +  LK+++K+     
Sbjct:   483 VDLTESIQNFTEHVMMHGVNIKMLKEGMTIDARHVKRKQLSLYLDSDFLKRERKSMESHN 542

Query:   542 N-----TSAKKRKSD---QALDELGDKSRPRLDSDSNSLSDKVNNISNNGDQSSSECTED 593
             N      + +KR S    Q+ D L    +P   +       K+  +S++  + +S  + D
Sbjct:   543 NFNNTLLANRKRLSTELAQSQDPLPPGQQPSSGNRGRDSGAKIQRLSDSLTEENSNASSD 602
GO:0004652 "polynucleotide adenylyltransferase activity" evidence=ISS;IDA;NAS
GO:0006378 "mRNA polyadenylation" evidence=ISS;IBA
GO:0003723 "RNA binding" evidence=IEA
GO:0005634 "nucleus" evidence=IBA
ZFIN|ZDB-GENE-040426-1256 papolg "poly(A) polymerase gamma" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NKG9 PAPOLA "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWT3 PAPOLG "Poly(A) polymerase gamma" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442119 Papolg "poly(A) polymerase gamma" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310337 Papolg "poly(A) polymerase gamma" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P51003 PAPOLA "Poly(A) polymerase alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:109301 Papola "poly (A) polymerase alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|G3XAH6 PAPOLA "Poly(A) polymerase alpha" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P25500 PAPOLA "Poly(A) polymerase alpha" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9BWT3PAPOG_HUMAN2, ., 7, ., 7, ., 1, 90.58140.82560.7336yesN/A
Q54J73PAP_DICDI2, ., 7, ., 7, ., 1, 90.43730.78130.6316yesN/A
Q10295PAP_SCHPO2, ., 7, ., 7, ., 1, 90.46460.60550.6996yesN/A
P29468PAP_YEAST2, ., 7, ., 7, ., 1, 90.42180.68190.7852yesN/A
Q6PCL9PAPOG_MOUSE2, ., 7, ., 7, ., 1, 90.59850.79050.6995yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.70.691
4th Layer2.7.7.19LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
pfam04928349 pfam04928, PAP_central, Poly(A) polymerase central 0.0
PTZ00418593 PTZ00418, PTZ00418, Poly(A) polymerase; Provisiona 0.0
COG5186552 COG5186, PAP1, Poly(A) polymerase [RNA processing 1e-166
pfam04926141 pfam04926, PAP_RNA-bind, Poly(A) polymerase predic 4e-41
cd05402114 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT 3e-25
pfam0190992 pfam01909, NTP_transf_2, Nucleotidyltransferase do 9e-11
>gnl|CDD|203124 pfam04928, PAP_central, Poly(A) polymerase central domain Back     alignment and domain information 
 Score =  579 bits (1494), Expect = 0.0
 Identities = 219/345 (63%), Positives = 261/345 (75%)

Query: 28  TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKE 87
            YG+T  ++ + P   DL+ T  L E LK   + E++EE   R EVL KLN LVKEW+K+
Sbjct: 3   QYGVTKPISTAGPTPADLELTDSLIEFLKEEGLFESEEESKKREEVLEKLNKLVKEWVKK 62

Query: 88  VSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLK 147
           VS  K +P   AE  GGKI+TFGSYRLGVH  G+DID LCVAP+HV R D+FSSF+E LK
Sbjct: 63  VSEQKGMPERAAEAAGGKIFTFGSYRLGVHGPGSDIDTLCVAPKHVTREDFFSSFYEILK 122

Query: 148 TVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCV 207
              EVT+L  VE+AFVP+IK  FDGIEID+LFA LAL  +PDD+DL DD LL+NLD+K V
Sbjct: 123 LRPEVTELVPVEDAFVPIIKFKFDGIEIDLLFASLALPRVPDDLDLLDDSLLRNLDEKSV 182

Query: 208 RSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVARICQ 267
           RSLNGCRVTDEILRLVPN + FR ALR IKLWAK+ GIYSNVLG+LGGV+WA+LVAR+CQ
Sbjct: 183 RSLNGCRVTDEILRLVPNKDVFRTALRAIKLWAKRRGIYSNVLGFLGGVAWAILVARVCQ 242

Query: 268 LYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITP 327
           LYPNA+ STLV KFF +FSQW+WP PVLLK  +   L F VWDPR+  +DRYHLMPIITP
Sbjct: 243 LYPNASPSTLVRKFFRIFSQWQWPNPVLLKPIEEGPLNFRVWDPRLYPSDRYHLMPIITP 302

Query: 328 AYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFE 372
           AYP  NST NV+ ST  ++ EEFK+G  I+ +I  GK  W  LFE
Sbjct: 303 AYPSMNSTHNVTRSTLKVITEEFKRGLEITSEILLGKAPWSDLFE 347

The central domain of Poly(A) polymerase shares structural similarity with the allosteric activity domain of ribonucleotide reductase R1, which comprises a four-helix bundle and a three-stranded mixed beta- sheet. Even though the two enzymes bind ATP, the ATP-recognition motifs are different. Length = 349
>gnl|CDD|240410 PTZ00418, PTZ00418, Poly(A) polymerase; Provisional Back     alignment and domain information
>gnl|CDD|227513 COG5186, PAP1, Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|218331 pfam04926, PAP_RNA-bind, Poly(A) polymerase predicted RNA binding domain Back     alignment and domain information
>gnl|CDD|143392 cd05402, NT_PAP_TUTase, Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>gnl|CDD|216779 pfam01909, NTP_transf_2, Nucleotidyltransferase domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 654
KOG2245|consensus562 100.0
PTZ00418593 Poly(A) polymerase; Provisional 100.0
COG5186552 PAP1 Poly(A) polymerase [RNA processing and modifi 100.0
PF04928254 PAP_central: Poly(A) polymerase central domain; In 100.0
PF04926157 PAP_RNA-bind: Poly(A) polymerase predicted RNA bin 99.97
COG5260482 TRF4 DNA polymerase sigma [DNA replication, recomb 99.97
KOG1906|consensus514 99.96
cd05402114 NT_PAP_TUTase Nucleotidyltransferase (NT) domain o 99.8
KOG2277|consensus596 99.7
TIGR03671408 cca_archaeal CCA-adding enzyme. 99.58
PRK13300447 tRNA CCA-pyrophosphorylase; Provisional 99.52
PF03813 972 Nrap: Nrap protein; InterPro: IPR005554 Members of 99.11
COG1746443 CCA1 tRNA nucleotidyltransferase (CCA-adding enzym 99.07
smart00572246 DZF domain in DSRM or ZnF_C2H2 domain containing p 98.03
KOG2054|consensus 1121 98.0
cd05400143 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT 97.72
PF0382860 PAP_assoc: Cid1 family poly A polymerase; InterPro 97.57
cd0539749 NT_Pol-beta-like Nucleotidyltransferase (NT) domai 97.46
PF0190993 NTP_transf_2: Nucleotidyltransferase domain A subs 97.29
cd0540393 NT_KNTase_like Nucleotidyltransferase (NT) domain 96.96
PF03813972 Nrap: Nrap protein; InterPro: IPR005554 Members of 96.85
PF09249114 tRNA_NucTransf2: tRNA nucleotidyltransferase, seco 96.77
PF14091152 DUF4269: Domain of unknown function (DUF4269) 96.43
COG166997 Predicted nucleotidyltransferases [General functio 95.67
PRK13746262 aminoglycoside resistance protein; Provisional 95.14
PF07528248 DZF: DZF domain; InterPro: IPR006561 This domain i 94.54
PF10421190 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 93.95
COG1708128 Predicted nucleotidyltransferases [General functio 93.87
cd00141307 NT_POLXc Nucleotidyltransferase (NT) domain of fam 92.99
PRK02098221 phosphoribosyl-dephospho-CoA transferase; Provisio 91.54
TIGR03135202 malonate_mdcG holo-ACP synthase, malonate decarbox 90.92
KOG3793|consensus362 88.39
PF14792112 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1R 87.02
COG1665315 Predicted nucleotidyltransferase [General function 86.96
cd05401172 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) doma 81.27
PF03445138 DUF294: Putative nucleotidyltransferase DUF294; In 80.05
>KOG2245|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-147  Score=1184.29  Aligned_cols=490  Identities=57%  Similarity=0.972  Sum_probs=471.9

Q ss_pred             CCccccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCc
Q psy18158         25 APVTYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGG  104 (654)
Q Consensus        25 ~~~~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~  104 (654)
                      +++.||||+|||+++|+++|+++|.+|+++|+++|+||++||..+|++||++|++||++|+++++.++|+|++++..+||
T Consensus        11 ~~~~~Gvt~PiS~a~p~~~d~~lt~~L~~~L~~~g~fEs~eEt~~R~~VL~~L~~iVk~wVk~vs~~k~~p~~~~~~agg   90 (562)
T KOG2245|consen   11 STKSYGVTQPISTAGPTEADIALTQELIKTLKNEGLFESKEETQRREEVLGKLNQIVKEWVKKVSEQKGLPDGMIENAGG   90 (562)
T ss_pred             ccccccccCCcccCCCcHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhcCc
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccc
Q psy18158        105 KIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLAL  184 (654)
Q Consensus       105 kl~~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~  184 (654)
                      +|+||||||||||+||||||++||+|+|++|+|||..|.++|+++++|++|++|++|+||||||+|+||+|||+||++++
T Consensus        91 kIftfGSYRLGVhg~GADIDtLcV~Prhv~R~DFF~sf~~mL~~~~eVteL~~V~dAfVPiikfKf~GI~IDllfArL~l  170 (562)
T KOG2245|consen   91 KIFTFGSYRLGVHGPGADIDTLCVGPRHVSRSDFFTSFYDMLKERPEVTELHAVEDAFVPIIKFKFDGIEIDLLFARLAL  170 (562)
T ss_pred             eEEeccceeecccCCCCCcceeeeccccccHHHHHHHHHHHHhcCccccccccccccccceEEEEecCeeeeeeehhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcccccchhhhhchhhhhhhccchhhhHHHHHHhcCChhhHHHHHHHHHHHHHHcCCCcCcCCccchHHHHHHHHH
Q psy18158        185 KEIPDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVSWAMLVAR  264 (654)
Q Consensus       185 ~~iP~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlvp~~~~Fr~llr~IK~WAK~RgIysn~~G~LGGis~aiLVa~  264 (654)
                      +.||++|||.||++|+||||+|+||||||||||+||+|||+.+.||.+|||||+|||+||||+|.+||||||+|||||||
T Consensus       171 ~~VP~dldl~ddslLknlDe~~vrSLNGcRVtdqiL~LVPn~~~F~~tLRaiKlWAKrrgVYsN~~GF~GGV~wA~LVAR  250 (562)
T KOG2245|consen  171 PVVPEDLDLSDDSLLKNLDERCVRSLNGCRVTDQILKLVPNQENFRITLRAIKLWAKRRGVYSNVMGFLGGVAWAMLVAR  250 (562)
T ss_pred             ccCCCcccccchHhhhcccHHHHHHhcCcCHHHHHHHhCCCHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCChHHHHHHHHHHHhcCCCCCceeecCCCCCCCCCcccCCCCCCCCCCCceeeeCCCCCCCCcCCccChhhHH
Q psy18158        265 ICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVADRYHLMPIITPAYPQQNSTFNVSISTRT  344 (654)
Q Consensus       265 icQl~Pn~s~~~LL~~FF~~Ys~wdW~~pV~L~~~~~~~l~~~vWdp~~~~~dr~~~MpIitP~~P~~Nsa~nVs~sTl~  344 (654)
                      +||+||||+++.||.+||.+|++|+||+||+|+.+++++++++||||+.|++||||+|||||||||+||+|||||+||++
T Consensus       251 iCQLYPNA~~s~Lv~kfF~ifs~W~WP~PVlL~~ie~~~L~~~VWdPr~n~~DryHlMPIITPAyP~~nsthNVS~ST~~  330 (562)
T KOG2245|consen  251 ICQLYPNASPSTLVAKFFRVFSQWNWPNPVLLKPIEEGNLNLPVWDPRVNPSDRYHLMPIITPAYPQMNSTHNVSRSTLK  330 (562)
T ss_pred             HHccCCCcchHHHHHHHHHHHhhccCCCceEeccccccccCccccCCCCCCCCcceecccccCCcccccccccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCchhhcCCCcchhhccceeEEEEEeCChhhhhhhHhHHHHHHHHHHHhhhcCCCcceec
Q psy18158        345 IMQEEFKQGKTISEDIYNGKTMWDKLFETPNFFTKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAH  424 (654)
Q Consensus       345 ~I~~Ef~Ra~~i~~~i~~~~~~W~~Lfe~~~Ff~~Yk~yl~I~v~a~~~e~~~~w~G~VESrlR~Lv~~LE~~~~i~~a~  424 (654)
                      +|++||+||.+||++|+.++..|.+|||+++||.+|||||+|+++|+++|++++|.||||||+|.|+.+||++..|.+||
T Consensus       331 Vi~~Ef~~g~~I~~~i~~~k~~W~~LFE~~~FF~rYk~yl~i~~~A~~~ed~l~w~G~vESriR~Lv~klE~~~~i~~ah  410 (562)
T KOG2245|consen  331 VITEEFKRGLEICDDIELNKLDWSDLFELYNFFSRYKHYLQITASAATEEDLLKWVGWVESRIRQLVLKLERNQVILIAH  410 (562)
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHhhhhHHHHHHhhHheeeeeccChHHHhhhhhHHHHHHHHHHHHHHhhcceEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcccCCCccccCCCCCCccccccccCCCCCCCCCCcceeeEEEEeEEecccceecchhhhHHHHHHHHHHhhhhccc
Q psy18158        425 VNPECYTDTTGVIANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFIAANVILNLTYDIQHFTNAVHWQATQSKM  504 (654)
Q Consensus       425 ~~P~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fIGL~~~~~~~~~DL~~~i~~F~~~v~~~~~~~~~  504 (654)
                      ++|+.|....     .       ..           ....|.+.|||||.+.. ..++||+..|++|...+.+|+.+...
T Consensus       411 p~P~~f~~~~-----~-------~~-----------~~~~~~~~~~igl~~~e-~~~~Dlt~~iq~f~~~v~~q~~~~~~  466 (562)
T KOG2245|consen  411 PNPKKFKDTY-----N-------CP-----------LEEDPESLWFIGLEFDE-NVKIDLTKDIQSFKKNVERQAVNLTL  466 (562)
T ss_pred             CCcccccccc-----c-------CC-----------cccchhHhhhhcccccc-cccchhhhhHHHhhhhhhhcceeeee
Confidence            9999998543     0       00           12346889999999854 44499999999999999999999999


Q ss_pred             cCCC--cEEEEEEecccccccccccccccccccCCC
Q psy18158        505 MKDG--MKIEVRHVKKKQLSEYLPAHMLKKDKKTKS  538 (654)
Q Consensus       505 ~~~~--m~i~v~~vkr~~L~~~V~~~~lkk~r~~~~  538 (654)
                      +..|  |.+++.|+||++|+.+++++.+++.|+.+.
T Consensus       467 ~~~g~~~~~~~~~~krr~l~~~~~~~~l~~~k~~~~  502 (562)
T KOG2245|consen  467 IKAGCDVEIDFGHVKRRSLIQTITKEFLRLCKQYKK  502 (562)
T ss_pred             eecccccccccccccccccccccCHHHhhHHHhhcc
Confidence            9999  777888999999999999999998886543

>PTZ00418 Poly(A) polymerase; Provisional Back     alignment and domain information
>COG5186 PAP1 Poly(A) polymerase [RNA processing and modification] Back     alignment and domain information
>PF04928 PAP_central: Poly(A) polymerase central domain; InterPro: IPR007012 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>PF04926 PAP_RNA-bind: Poly(A) polymerase predicted RNA binding domain; InterPro: IPR007010 In eukaryotes, polyadenylation of pre-mRNA plays an essential role in the initiation step of protein synthesis, as well as in the export and stability of mRNAs Back     alignment and domain information
>COG5260 TRF4 DNA polymerase sigma [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1906|consensus Back     alignment and domain information
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases Back     alignment and domain information
>KOG2277|consensus Back     alignment and domain information
>TIGR03671 cca_archaeal CCA-adding enzyme Back     alignment and domain information
>PRK13300 tRNA CCA-pyrophosphorylase; Provisional Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>COG1746 CCA1 tRNA nucleotidyltransferase (CCA-adding enzyme) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00572 DZF domain in DSRM or ZnF_C2H2 domain containing proteins Back     alignment and domain information
>KOG2054|consensus Back     alignment and domain information
>cd05400 NT_2-5OAS_ClassI-CCAase Nucleotidyltransferase (NT) domain of 2'5'-oligoadenylate (2-5A)synthetase (2-5OAS) and class I CCA-adding enzyme Back     alignment and domain information
>PF03828 PAP_assoc: Cid1 family poly A polymerase; InterPro: IPR002058 These PAP/25A associated domains are found in uncharacterised eukaryotic proteins, a number of which are described as 'topoisomerase 1-related' though they appear to have little or no homology to topoisomerase 1 Back     alignment and domain information
>cd05397 NT_Pol-beta-like Nucleotidyltransferase (NT) domain of DNA polymerase beta and similar proteins Back     alignment and domain information
>PF01909 NTP_transf_2: Nucleotidyltransferase domain A subset of this Pfam family; InterPro: IPR002934 A small region that overlaps with a nuclear localization signal and binds to the RNA primer contains three aspartates that are essential for catalysis Back     alignment and domain information
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins Back     alignment and domain information
>PF03813 Nrap: Nrap protein; InterPro: IPR005554 Members of this family are nucleolar RNA-associated proteins (Nrap) which are highly conserved from yeast (Saccharomyces cerevisiae) to human Back     alignment and domain information
>PF09249 tRNA_NucTransf2: tRNA nucleotidyltransferase, second domain; InterPro: IPR015329 This domain adopts a structure consisting of a five helical bundle core Back     alignment and domain information
>PF14091 DUF4269: Domain of unknown function (DUF4269) Back     alignment and domain information
>COG1669 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>PRK13746 aminoglycoside resistance protein; Provisional Back     alignment and domain information
>PF07528 DZF: DZF domain; InterPro: IPR006561 This domain is found in proteins containing the double-stranded RNA-binding motif, DSRM (IPR001159 from INTERPRO), or the zinc finger domain C2H2 (IPR007087 from INTERPRO) Back     alignment and domain information
>PF10421 OAS1_C: 2'-5'-oligoadenylate synthetase 1, domain 2, C-terminus ; InterPro: IPR018952 This is the largely alpha-helical, C-terminal half of 2'-5'-oligoadenylate synthetase 1, being described as domain 2 of the enzyme and homologous to a tandem ubiquitin repeat Back     alignment and domain information
>COG1708 Predicted nucleotidyltransferases [General function prediction only] Back     alignment and domain information
>cd00141 NT_POLXc Nucleotidyltransferase (NT) domain of family X DNA Polymerases Back     alignment and domain information
>PRK02098 phosphoribosyl-dephospho-CoA transferase; Provisional Back     alignment and domain information
>TIGR03135 malonate_mdcG holo-ACP synthase, malonate decarboxylase-specific Back     alignment and domain information
>KOG3793|consensus Back     alignment and domain information
>PF14792 DNA_pol_B_palm: DNA polymerase beta palm ; PDB: 1RZT_A 3PML_A 2PFN_A 3HX0_K 3HWT_A 2GWS_E 2BCQ_A 3UPQ_A 2BCS_A 3UQ2_A Back     alignment and domain information
>COG1665 Predicted nucleotidyltransferase [General function prediction only] Back     alignment and domain information
>cd05401 NT_GlnE_GlnD_like Nucleotidyltransferase (NT) domain of Escherichia coli adenylyltransferase (GlnE), Escherichia coli uridylyl transferase (GlnD), and similar proteins Back     alignment and domain information
>PF03445 DUF294: Putative nucleotidyltransferase DUF294; InterPro: IPR005105 This domain is found associated with an N-terminal cyclic nucleotide-binding domain (IPR000595 from INTERPRO) and two CBS domains (IPR000644 from INTERPRO) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
1q79_A514 Crystal Structure Of Mammalian Poly(A) Polymerase L 0.0
1q78_A514 Crystal Structure Of Poly(A) Polymerase In Complex 0.0
1f5a_A513 Crystal Structure Of Mammalian Poly(A) Polymerase L 1e-174
1fa0_A537 Structure Of Yeast Poly(A) Polymerase Bound To Mang 1e-99
2hhp_A530 Structure Of Yeast Poly(A) Polymerase In A Closed C 1e-99
2o1p_A546 Structure Of Yeast Poly(A) Polymerase In A Somewhat 2e-99
2q66_A525 Structure Of Yeast Poly(A) Polymerase With Atp And 1e-98
>pdb|1Q79|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 514 Back     alignment and structure 
Iteration: 1

 Score =  635 bits (1637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/522 (59%), Positives = 382/522 (73%), Gaps = 28/522 (5%)
Query: 19  GKPQSQAPVT-YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKL 77
           G  Q+Q P   YG+T+ ++L+ P + D   T++L E LKP+ V E +EEL  R+ +L KL
Sbjct: 9   GSQQTQPPQKHYGITSPISLAAPKETDXLLTQKLVETLKPFGVFEEEEELQRRILILGKL 68
Query: 78  NNLVKEWIKEVSIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRAD 137
           NNLVKEWI+E+S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D
Sbjct: 69  NNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSD 128
Query: 138 YFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPXXXXXXXXX 197
           +F+SF++KLK  +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP         
Sbjct: 129 FFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLXFDGIEIDILFARLALQTIPEDLDLRDDS 188
Query: 198 XXXXXXQKCVRSLNGCRVTDEILRLVPNIENFRLALRTIKLWAKKHGIYSNVLGYLGGVS 257
                  + +RSLNGCRVTDEIL LVPNI+NFRL LR IKLWAK+H IYSN+LG+LGGVS
Sbjct: 189 LLKNLDIRXIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNILGFLGGVS 248
Query: 258 WAMLVARICQLYPNAAASTLVCKFFLVFSQWKWPQPVLLKKPDNVNLGFPVWDPRVNVAD 317
           WAMLVAR CQLYPNA ASTLV KFFLVFS+W+WP PVLLK+P+  NL  PVWDPRVN +D
Sbjct: 249 WAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVWDPRVNPSD 308
Query: 318 RYHLMPIITPAYPQQNSTFNVSISTRTIMQEEFKQGKTISEDIYNGKTMWDKLFETPNFF 377
           RYHLMPIITPAYPQQNST+NVS+STR +M EEFKQG  I+++I   K  W KLFE PNFF
Sbjct: 309 RYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSKLFEAPNFF 368
Query: 378 TKYRHYLVLIASSVSAEDQLEWCGLIESKVRHLIGNLERNPHINLAHVNPECYTDTTGVI 437
            KY+HY+VL+AS+ + + +LEW GL+ESK+R L+G+LE+N  I LAHVNP+ +       
Sbjct: 369 QKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQSFP------ 422
Query: 438 ANGSGSPEITAEGKEEGGENTSPPVSGVASMWFIGLDFI----AANVILNLTYDIQHFTN 493
                                +P      +MW IGL F     + N+ ++LTYDIQ FT+
Sbjct: 423 -----------------APKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTD 465
Query: 494 AVHWQATQSKMMKDGMKIEVRHVKKKQLSEYLPAHMLKKDKK 535
            V+ QA  SKM +  MKI   HVK+KQL + LP+H+L+K KK
Sbjct: 466 TVYRQAINSKMFEVDMKIAAMHVKRKQLHQLLPSHVLQKKKK 507
>pdb|1Q78|A Chain A, Crystal Structure Of Poly(A) Polymerase In Complex With 3'- Datp And Magnesium Chloride Length = 514 Back     alignment and structure
>pdb|1F5A|A Chain A, Crystal Structure Of Mammalian Poly(A) Polymerase Length = 513 Back     alignment and structure
>pdb|1FA0|A Chain A, Structure Of Yeast Poly(A) Polymerase Bound To Manganate And 3'-Datp Length = 537 Back     alignment and structure
>pdb|2HHP|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Closed Conformation Length = 530 Back     alignment and structure
>pdb|2O1P|A Chain A, Structure Of Yeast Poly(A) Polymerase In A Somewhat Closed State Length = 546 Back     alignment and structure
>pdb|2Q66|A Chain A, Structure Of Yeast Poly(A) Polymerase With Atp And Oligo(A) Length = 525 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query654
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 0.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 1e-179
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 1e-13
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 3e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 4e-09
4ep7_A340 Poly(A) RNA polymerase protein CID1; poly(U) polym 7e-09
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 2e-07
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 4e-07
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 1e-06
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Length = 530 Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Length = 323 Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Length = 405 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4ep7_A Poly(A) RNA polymerase protein CID1; poly(U) polymerase, UTP binding, transferase; HET: UTP; 2.28A {Schizosaccharomyces pombe} Length = 340 Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Length = 353 Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Length = 464 Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Length = 468 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query654
1q79_A514 Poly(A) polymerase alpha; mRNA processing, nucleot 100.0
2hhp_A530 Poly(A) polymerase; template-independent RNA polym 100.0
2ikf_A353 RNA uridylyl transferase; tutase, nucleotidyltrans 100.0
4fh3_A349 Poly(A) RNA polymerase protein CID1; nucleotidyltr 100.0
4e8f_A405 Poly(A) RNA polymerase protein CID1; beta polymera 100.0
3nyb_A323 Poly(A) RNA polymerase protein 2; polya RNA polyme 100.0
2b4v_A468 RNA editing complex protein MP57; tbret2, TBMP57, 100.0
3hj4_A384 Minor editosome-associated tutase; nucleotidyltran 100.0
3pq1_A464 Poly(A) RNA polymerase; nucleotidyl transferase, R 100.0
1r89_A437 TRNA nucleotidyltransferase; CCA adding enzyme, in 99.25
1px5_A349 2'-5'-oligoadenylate synthetase 1; 5-stranded anti 99.15
4at7_A364 Interleukin enhancer-binding factor 2; transcripti 97.82
1no5_A114 Hypothetical protein HI0073; structural genomics, 97.23
4at7_B383 NF90, interleukin enhancer-binding factor 3; trans 96.97
2rff_A111 Putative nucleotidyltransferase; NP_343093.1, nucl 96.96
1wot_A98 Putative minimal nucleotidyltransferase; alpha and 96.85
1ylq_A96 Putative nucleotidyltransferase, hypothetical Pro 96.68
4ebj_A272 Aminoglycoside nucleotidyltransferase; structural 94.42
2fmp_A335 DNA polymerase beta; nucleotidyl transferase, tran 94.19
2bcq_A335 DNA polymerase lambda; misalignment, extrahelical, 93.7
1kny_A253 Kntase, kanamycin nucleotidyltransferase; antibiot 93.5
1jaj_A174 DNA polymerase beta-like protein; CIS peptide, vir 91.87
2ihm_A360 POL MU, DNA polymerase MU; helix-turn-helix, trans 91.12
3jz0_A287 Lincosamide nucleotidyltransferase; alpha-beta str 87.86
1jms_A381 Terminal deoxynucleotidyltransferase; polymerase; 86.73
3b0x_A575 DNA polymerase beta family (X family); structural 86.48
>2hhp_A Poly(A) polymerase; template-independent RNA polymerase, transferase; HET: FLC; 1.80A {Saccharomyces cerevisiae} SCOP: a.160.1.1 d.218.1.3 d.58.16.1 PDB: 1fa0_A* 3c66_A* 2o1p_A 2q66_A* Back     alignment and structure
>2ikf_A RNA uridylyl transferase; tutase, nucleotidyltransferase, UTP-binding, RNA editing; HET: UTP; 2.00A {Trypanosoma brucei} PDB: 2nom_A* 2q0c_A* 2q0d_A* 2q0e_A* 2q0f_A* 2q0g_A* Back     alignment and structure
>4fh3_A Poly(A) RNA polymerase protein CID1; nucleotidyltransferase, poly(U) polymerase, transferase; 2.00A {Schizosaccharomyces pombe} PDB: 4fh5_A* 4fhp_A* 4fhv_A* 4fhw_A* 4fhy_A* 4fhx_A* 4ep7_A* Back     alignment and structure
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A Back     alignment and structure
>3nyb_A Poly(A) RNA polymerase protein 2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A* Back     alignment and structure
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens} Back     alignment and structure
>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransfera superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} SCOP: a.160.1.3 d.218.1.7 d.58.16.2 PDB: 1r8a_A 1r8b_A* 1r8c_A* 1sz1_A* 1tfw_A* 1tfy_A* 1uet_A 1ueu_A* 1uev_A* 2dr5_A 2dr7_A 2dr8_A* 2dr9_A 2dra_A* 2drb_A 2dvi_A* 2zh1_A 2zh2_A 2zh3_A 2zh4_A ... Back     alignment and structure
>1px5_A 2'-5'-oligoadenylate synthetase 1; 5-stranded antiparalel beta sheet, four helix bundle, transferase; HET: YCM; 1.74A {Sus scrofa} SCOP: a.160.1.2 d.218.1.6 Back     alignment and structure
>4at7_A Interleukin enhancer-binding factor 2; transcription, DRPB76, NFAR, ILF3, ILF2, template-free nucleotidyltransferase fold; HET: 1PE; 1.902A {Mus musculus} PDB: 4at8_A* 4at9_A* 4atb_A* Back     alignment and structure
>1no5_A Hypothetical protein HI0073; structural genomics, nucleotidyl transferase structure 2 function project, S2F, unknown function; 1.80A {Haemophilus influenzae} SCOP: d.218.1.5 Back     alignment and structure
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2} Back     alignment and structure
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5 Back     alignment and structure
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5 Back     alignment and structure
>4ebj_A Aminoglycoside nucleotidyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 1.60A {Pseudomonas aeruginosa} PDB: 4ebk_A* Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>1kny_A Kntase, kanamycin nucleotidyltransferase; antibiotic resistance, plasmid; HET: APC KAN; 2.50A {Staphylococcus aureus} SCOP: a.24.16.1 d.218.1.1 PDB: 1kan_A Back     alignment and structure
>1jaj_A DNA polymerase beta-like protein; CIS peptide, viral protein; HET: DNA; NMR {African swine fever virus} SCOP: d.218.1.2 PDB: 1jqr_A* Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>3jz0_A Lincosamide nucleotidyltransferase; alpha-beta structure, transferase-antibiotic CO; HET: APC CLY; 2.00A {Enterococcus faecium} PDB: 3jyy_A* Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 654
d1q79a2196 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-te 2e-87
d2q66a1150 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, mid 3e-86
d1q79a1150 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, mid 4e-86
d2q66a2197 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-ter 7e-82
d1q79a3134 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-t 1e-43
d2q66a3178 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-t 3e-38
d2b4va1183 a.160.1.4 (A:289-471) RNA editing terminal uridyl 6e-13
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 196 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  269 bits (688), Expect = 2e-87
 Identities = 135/195 (69%), Positives = 166/195 (85%)

Query: 29  YGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEV 88
           YG+T+ ++L+ P + D   T++L E LKP+ V E +EEL  R+ +L KLNNLVKEWI+E+
Sbjct: 2   YGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREI 61

Query: 89  SIAKNIPPTVAEKVGGKIYTFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKT 148
           S +KN+P +V E VGGKI+TFGSYRLGVH KGADIDALCVAPRHVDR+D+F+SF++KLK 
Sbjct: 62  SESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKL 121

Query: 149 VDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEIPDDMDLRDDMLLKNLDQKCVR 208
            +EV DLRAVEEAFVPVIK+ FDGIEID+LFARLAL+ IP+D+DLRDD LLKNLD +C+R
Sbjct: 122 QEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIR 181

Query: 209 SLNGCRVTDEILRLV 223
           SLNGCRVTDEIL LV
Sbjct: 182 SLNGCRVTDEILHLV 196
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 Back     information, alignment and structure
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Length = 150 Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 197 Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 134 Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 178 Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Length = 183 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query654
d1q79a2196 Poly(A) polymerase, PAP, N-terminal domain {Cow (B 100.0
d1q79a1150 Poly(A) polymerase, PAP, middle domain {Cow (Bos t 100.0
d2q66a2197 Poly(A) polymerase, PAP, N-terminal domain {Baker' 100.0
d2q66a1150 Poly(A) polymerase, PAP, middle domain {Baker's ye 100.0
d1q79a3134 Poly(A) polymerase, PAP, C-terminal domain {Cow (B 100.0
d2q66a3178 Poly(A) polymerase, PAP, C-terminal domain {Baker' 99.97
d2b4va1183 RNA editing terminal uridyl transferase 2, TUTase 99.89
d1r89a2142 tRNA nucleotidyltransferase, N-terminal domain {Ar 98.39
d1no5a_100 Hypothetical protein HI0073 {Haemophilus influenza 98.0
d2b4va2259 RNA editing terminal uridyl transferase 2, TUTase 97.76
d1ylqa190 Putative nucleotidyltransferase AF0614 {Archaeon A 97.5
d1wota_98 Unnamed putative nucleotidyltransferase {Thermus t 96.51
d2bcqa3190 DNA polymerase lambda {Human (Homo sapiens) [TaxId 96.41
d1r89a1115 tRNA nucleotidyltransferase, second domain {Archae 96.18
d1knya2125 Kanamycin nucleotidyltransferase (KNTase), N-termi 95.75
d2fmpa3187 DNA polymerase beta, catalytic (31 kD) fragment {H 95.3
d1px5a1146 2'-5'-oligoadenylate synthetase 1, OAS1, second do 94.72
d1jmsa4208 Terminal deoxynucleotidyl transferase {Mouse (Mus 93.89
d1px5a2200 2'-5'-oligoadenylate synthetase 1, OAS1, N-termina 91.35
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: Poly(A) polymerase, PAP, N-terminal domain
domain: Poly(A) polymerase, PAP, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.2e-54  Score=423.31  Aligned_cols=196  Identities=69%  Similarity=1.143  Sum_probs=193.5

Q ss_pred             cccccccccCCCCChHhHHhhHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcccccccCcEEE
Q psy18158         28 TYGMTTALNLSPPNQLDLQRTRELAECLKPYNVSETDEELSSRMEVLSKLNNLVKEWIKEVSIAKNIPPTVAEKVGGKIY  107 (654)
Q Consensus        28 ~~Gvt~Pis~~~Pt~~dl~~t~~L~~~L~~~~~~ps~eE~~~R~~Vl~~L~~ivk~w~~~v~~~~~~p~~~~~~~~~kl~  107 (654)
                      |||||+|||+++||+.|++.+++|+++|+++++|||+||.++|++||.+|++++++|+++++.++|++++.++.++++|+
T Consensus         1 ~~GvT~PiS~~~Pt~~D~~~s~~L~~~L~~~~~~ps~ee~~~R~~vl~~L~~lv~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (196)
T d1q79a2           1 HYGITSPISLAAPKETDCLLTQKLVETLKPFGVFEEEEELQRRILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIF   80 (196)
T ss_dssp             CCSSSCCSCCCCCCHHHHHHHHHHHHHHGGGTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTTCBCEEE
T ss_pred             CCCCCCCcccCCCChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcchhccCCcEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeCCCCCCCceeEEEecCCCCChhhHHHHHHHHHhcCCCccceEecccCcccEEEEEEcCeeeeEEEeeccccCC
Q psy18158        108 TFGSYRLGVHHKGADIDALCVAPRHVDRADYFSSFFEKLKTVDEVTDLRAVEEAFVPVIKMNFDGIEIDMLFARLALKEI  187 (654)
Q Consensus       108 ~FGSy~lGv~~p~SDID~l~v~p~~vsr~~ff~~l~~~L~~~~~v~~l~~I~~A~VPIIKf~~~GI~iDLsfa~l~~~~i  187 (654)
                      |||||++|+|+|+||||+||++|.++++++||..|+++|++.+.++++++|++|+||||||+++||+|||+||+++.+.+
T Consensus        81 ~FGS~~lgv~~p~SDID~~~i~p~~~~~~~ff~~l~~~L~~~~~v~~v~~I~~A~VPiiK~~~~gi~iDlsfa~l~~~~~  160 (196)
T d1q79a2          81 TFGSYRLGVHTKGADIDALCVAPRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTI  160 (196)
T ss_dssp             EEHHHHHTCCCTTCCEEEEEEECTTSCHHHHTTHHHHHHHTCTTEEEEEEETTSSSCEEEEEETTEEEEEEEEECSCSSB
T ss_pred             EeccccccccCCCCCccEEEecCCcCCHHHHHHHHHHHHhcCCCcceEEEeccccccEEEEEEcCeeEeehhhhcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccchhhhhchhhhhhhccchhhhHHHHHHhc
Q psy18158        188 PDDMDLRDDMLLKNLDQKCVRSLNGCRVTDEILRLV  223 (654)
Q Consensus       188 P~~l~l~~d~lL~~lD~~s~rSLNG~Rv~d~Ilrlv  223 (654)
                      |+++++.++++|++||++++|||||+||+++|+++|
T Consensus       161 p~~l~l~~~~lL~~ld~~~~rslNG~Rv~~~il~lV  196 (196)
T d1q79a2         161 PEDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLV  196 (196)
T ss_dssp             CTTCCTTCGGGGTTCCHHHHHHHHHHHHHHHHHTSS
T ss_pred             CcccccCChHHHhcCChhhhhhhccHHHHHHHHhhC
Confidence            999999999999999999999999999999999986
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a2 d.218.1.3 (A:5-201) Poly(A) polymerase, PAP, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q79a3 d.58.16.1 (A:365-498) Poly(A) polymerase, PAP, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2q66a3 d.58.16.1 (A:352-529) Poly(A) polymerase, PAP, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2b4va1 a.160.1.4 (A:289-471) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1no5a_ d.218.1.5 (A:) Hypothetical protein HI0073 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b4va2 d.218.1.10 (A:30-288) RNA editing terminal uridyl transferase 2, TUTase 2, RET2 {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa3 d.218.1.2 (A:386-575) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r89a1 a.160.1.3 (A:143-257) tRNA nucleotidyltransferase, second domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1knya2 d.218.1.1 (A:1-125) Kanamycin nucleotidyltransferase (KNTase), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2fmpa3 d.218.1.2 (A:149-335) DNA polymerase beta, catalytic (31 kD) fragment {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1px5a1 a.160.1.2 (A:201-346) 2'-5'-oligoadenylate synthetase 1, OAS1, second domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jmsa4 d.218.1.2 (A:303-510) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1px5a2 d.218.1.6 (A:1-200) 2'-5'-oligoadenylate synthetase 1, OAS1, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure