Psyllid ID: psy18161


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------21
MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQSINYSMSSDTSNHSST
cccccEEEEEEEccccHHHHHHccccEEEEEEEEccEEEEEcccccccccEEEEccccccccccccEEEEEEEcccccccHHHHHHHHHHHccccccccccccccccEEEcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
ccccEEEEEEEEcccHHHHHHHEcEEEEEccEEEEcEEEEcccccccccEEEEEccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccccccccccccEEEEccccccHHHHHHHHHHHccccccccHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHccHHHHHccccccccccccccccc
MAREPILLNVYDMlwtndytstlglgvfHSGIEVygveyaygghqypfsgifrisprdakelgeqfafresiqigstdfteSDVKRIVTELGkeyrgdryhlmnkgesiqigstdfteSDVKRIVTELGkeyrgdryhlMNKNCNHFSNELTKIlcgqeipgwvNRLAYfsscvpflqrclpkewltpdaltqsinysmssdtsnhsst
MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAfresiqigstdftesdvKRIVTELgkeyrgdryhlmnkgesiqigstdftesdVKRIVTELGkeyrgdryHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQsinysmssdtsnhsst
MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQSINYsmssdtsnhssT
*****ILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQ****************
*AREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPK**************************
MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQSINYS***********
**REPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQ****************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRCLPKEWLTPDALTQSINYSMSSDTSNHSST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query209 2.2.26 [Sep-21-2011]
Q6DC39196 Desumoylating isopeptidas yes N/A 0.775 0.826 0.582 1e-64
Q5PQ09192 Desumoylating isopeptidas N/A N/A 0.789 0.859 0.559 8e-64
Q5ZIV7193 Desumoylating isopeptidas no N/A 0.760 0.823 0.566 4e-62
Q9D291194 Desumoylating isopeptidas yes N/A 0.784 0.845 0.542 3e-61
Q5XIT6194 Desumoylating isopeptidas yes N/A 0.755 0.814 0.558 4e-61
A3QRX8194 Desumoylating isopeptidas yes N/A 0.755 0.814 0.558 5e-61
Q5R456194 Desumoylating isopeptidas yes N/A 0.755 0.814 0.558 6e-61
Q9BSY9194 Desumoylating isopeptidas yes N/A 0.755 0.814 0.558 6e-61
Q93VG8224 DeSI-like protein At4g174 no N/A 0.784 0.732 0.323 2e-27
Q8X1T0201 DeSI-like protein hag1 OS yes N/A 0.650 0.676 0.283 3e-14
>sp|Q6DC39|DESI2_DANRE Desumoylating isopeptidase 2 OS=Danio rerio GN=desi2 PE=2 SV=1 Back     alignment and function desciption
 Score =  246 bits (627), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 116/199 (58%), Positives = 140/199 (70%), Gaps = 37/199 (18%)

Query: 1   MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAK 60
           MA EP++LNVYDM W N++TS+LG+GVFHSGIE+YG E+AYGGH YPFSGIF I+P DA 
Sbjct: 1   MANEPVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDAT 60

Query: 61  ELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESD 120
           ELGE F F+E+I +                                     GSTDFTE D
Sbjct: 61  ELGETFKFKEAIVL-------------------------------------GSTDFTEED 83

Query: 121 VKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRC 180
           V+RIV E+GKEY+G+ YHLM+KNCNHFS+ L++ILCG+EIP WVNRLAYFSSCVPFLQ C
Sbjct: 84  VERIVEEMGKEYKGNAYHLMHKNCNHFSSALSEILCGREIPRWVNRLAYFSSCVPFLQSC 143

Query: 181 LPKEWLTPDALTQSINYSM 199
           LPKEWLTP AL  S++  +
Sbjct: 144 LPKEWLTPAALQSSVSQEL 162




Protease which may deconjugate SUMO from some substrate proteins.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q5PQ09|DESI2_XENLA Desumoylating isopeptidase 2 OS=Xenopus laevis GN=desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5ZIV7|DESI2_CHICK Desumoylating isopeptidase 2 OS=Gallus gallus GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9D291|DESI2_MOUSE Desumoylating isopeptidase 2 OS=Mus musculus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIT6|DESI2_RAT Desumoylating isopeptidase 2 OS=Rattus norvegicus GN=Desi2 PE=2 SV=1 Back     alignment and function description
>sp|A3QRX8|DESI2_PIG Desumoylating isopeptidase 2 OS=Sus scrofa GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R456|DESI2_PONAB Desumoylating isopeptidase 2 OS=Pongo abelii GN=DESI2 PE=2 SV=1 Back     alignment and function description
>sp|Q9BSY9|DESI2_HUMAN Desumoylating isopeptidase 2 OS=Homo sapiens GN=DESI2 PE=1 SV=1 Back     alignment and function description
>sp|Q93VG8|PPDEX_ARATH DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1 Back     alignment and function description
>sp|Q8X1T0|HAG1_SCHPO DeSI-like protein hag1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hag1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
340710706213 PREDICTED: PPPDE peptidase domain-contai 0.822 0.807 0.617 3e-69
380014911196 PREDICTED: PPPDE peptidase domain-contai 0.784 0.836 0.631 1e-68
328786383206 PREDICTED: PPPDE peptidase domain-contai 0.760 0.771 0.642 2e-68
322795193202 hypothetical protein SINV_05045 [Solenop 0.799 0.826 0.612 7e-68
332029695202 PPPDE peptidase domain-containing protei 0.799 0.826 0.612 1e-67
383852001209 PREDICTED: PPPDE peptidase domain-contai 0.760 0.760 0.632 2e-67
321469349203 hypothetical protein DAPPUDRAFT_303986 [ 0.760 0.783 0.607 2e-66
345487695203 PREDICTED: PPPDE peptidase domain-contai 0.765 0.788 0.604 3e-65
195027381203 GH20459 [Drosophila grimshawi] gi|193902 0.808 0.832 0.572 1e-64
91078738204 PREDICTED: similar to conserved hypothet 0.822 0.843 0.588 1e-64
>gi|340710706|ref|XP_003393927.1| PREDICTED: PPPDE peptidase domain-containing protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
 Score =  266 bits (681), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/209 (61%), Positives = 146/209 (69%), Gaps = 37/209 (17%)

Query: 1   MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAK 60
           MAREPI+LNVYDM W N+YT+ +GLGVFHSG+E+YG EYAYGGH  P SGIF I+PR A+
Sbjct: 30  MAREPIILNVYDMYWINEYTTPIGLGVFHSGVEIYGTEYAYGGHSKPISGIFEITPRVAE 89

Query: 61  ELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESD 120
           ELGEQF +R+S                                     + IG TDFTE D
Sbjct: 90  ELGEQFRYRQS-------------------------------------VHIGYTDFTEED 112

Query: 121 VKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQRC 180
           V RIVTELGK++RGDRYHLMNKNCNHFS++LT ILCGQEIPGWVNRLAYFSSCVPFLQRC
Sbjct: 113 VTRIVTELGKDFRGDRYHLMNKNCNHFSSQLTLILCGQEIPGWVNRLAYFSSCVPFLQRC 172

Query: 181 LPKEWLTPDALTQSINYSMSSDTSNHSST 209
           LPKEWLTPDAL  S+N      TS+   T
Sbjct: 173 LPKEWLTPDALQHSLNQVSHESTSSERVT 201




Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380014911|ref|XP_003691458.1| PREDICTED: PPPDE peptidase domain-containing protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328786383|ref|XP_003250782.1| PREDICTED: PPPDE peptidase domain-containing protein 1-like isoform 1 [Apis mellifera] gi|328786385|ref|XP_623062.3| PREDICTED: PPPDE peptidase domain-containing protein 1-like isoform 2 [Apis mellifera] gi|350412781|ref|XP_003489760.1| PREDICTED: PPPDE peptidase domain-containing protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322795193|gb|EFZ18015.1| hypothetical protein SINV_05045 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332029695|gb|EGI69574.1| PPPDE peptidase domain-containing protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383852001|ref|XP_003701519.1| PREDICTED: PPPDE peptidase domain-containing protein 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|321469349|gb|EFX80329.1| hypothetical protein DAPPUDRAFT_303986 [Daphnia pulex] Back     alignment and taxonomy information
>gi|345487695|ref|XP_001605559.2| PREDICTED: PPPDE peptidase domain-containing protein 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195027381|ref|XP_001986561.1| GH20459 [Drosophila grimshawi] gi|193902561|gb|EDW01428.1| GH20459 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|91078738|ref|XP_967649.1| PREDICTED: similar to conserved hypothetical protein [Tribolium castaneum] gi|270004090|gb|EFA00538.1| hypothetical protein TcasGA2_TC003403 [Tribolium castaneum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query209
ZFIN|ZDB-GENE-040801-39196 desi2 "desumoylating isopeptid 0.502 0.535 0.704 1.1e-39
UNIPROTKB|Q5ZIV7193 DESI2 "Desumoylating isopeptid 0.502 0.544 0.666 2.4e-37
UNIPROTKB|Q9BSY9194 DESI2 "Desumoylating isopeptid 0.497 0.536 0.663 6.3e-37
UNIPROTKB|A3QRX8194 DESI2 "Desumoylating isopeptid 0.497 0.536 0.663 6.3e-37
MGI|MGI:1926075194 Desi2 "desumoylating isopeptid 0.497 0.536 0.663 6.3e-37
RGD|1359392194 Desi2 "desumoylating isopeptid 0.497 0.536 0.663 8e-37
TAIR|locus:2129096224 AT4G17486 "AT4G17486" [Arabido 0.478 0.446 0.432 1.5e-21
TAIR|locus:2171524245 AT5G47310 "AT5G47310" [Arabido 0.464 0.395 0.455 1.5e-21
TAIR|locus:2025752227 AT1G80690 "AT1G80690" [Arabido 0.464 0.427 0.475 1.5e-21
TAIR|locus:2040204240 AT2G25190 "AT2G25190" [Arabido 0.464 0.404 0.465 3.9e-21
ZFIN|ZDB-GENE-040801-39 desi2 "desumoylating isopeptidase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 74/105 (70%), Positives = 91/105 (86%)

Query:     1 MAREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAK 60
             MA EP++LNVYDM W N++TS+LG+GVFHSGIE+YG E+AYGGH YPFSGIF I+P DA 
Sbjct:     1 MANEPVILNVYDMYWINEFTSSLGIGVFHSGIEIYGREFAYGGHPYPFSGIFEITPGDAT 60

Query:    61 ELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNK 105
             ELGE F F+E+I +GSTDFTE DV+RIV E+GKEY+G+ YHLM+K
Sbjct:    61 ELGETFKFKEAIVLGSTDFTEEDVERIVEEMGKEYKGNAYHLMHK 105


GO:0060027 "convergent extension involved in gastrulation" evidence=IGI;IMP
GO:0005737 "cytoplasm" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0016787 "hydrolase activity" evidence=IEA
GO:0008233 "peptidase activity" evidence=IEA
UNIPROTKB|Q5ZIV7 DESI2 "Desumoylating isopeptidase 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BSY9 DESI2 "Desumoylating isopeptidase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A3QRX8 DESI2 "Desumoylating isopeptidase 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1926075 Desi2 "desumoylating isopeptidase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1359392 Desi2 "desumoylating isopeptidase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2129096 AT4G17486 "AT4G17486" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171524 AT5G47310 "AT5G47310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025752 AT1G80690 "AT1G80690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040204 AT2G25190 "AT2G25190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DC39DESI2_DANRE3, ., 4, ., -, ., -0.58290.77510.8265yesN/A
Q5XIT6DESI2_RAT3, ., 4, ., -, ., -0.55890.75590.8144yesN/A
Q5R456DESI2_PONAB3, ., 4, ., -, ., -0.55890.75590.8144yesN/A
Q9D291DESI2_MOUSE3, ., 4, ., -, ., -0.54220.78460.8453yesN/A
Q9BSY9DESI2_HUMAN3, ., 4, ., -, ., -0.55890.75590.8144yesN/A
A3QRX8DESI2_PIG3, ., 4, ., -, ., -0.55890.75590.8144yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
pfam05903151 pfam05903, DUF862, PPPDE putative peptidase domain 1e-49
>gnl|CDD|218802 pfam05903, DUF862, PPPDE putative peptidase domain Back     alignment and domain information
 Score =  158 bits (401), Expect = 1e-49
 Identities = 67/191 (35%), Positives = 89/191 (46%), Gaps = 49/191 (25%)

Query: 4   EPILLNVYDMLWTND------YTSTLGL---GVFHSGIEVYGVEYAYGGHQYPFSGIFRI 54
            P+ LNVYD+   N           LG    G+FH+G+EVYGVEY +G H Y  SGIF  
Sbjct: 1   HPVKLNVYDLSPINGGLARRYSPLLLGKQIEGIFHTGVEVYGVEYFFGAHTYEGSGIFEC 60

Query: 55  SPRDAKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGST 114
            P                                   G   R          ESI++G T
Sbjct: 61  PPGRTCP------------------------------GFTPR----------ESIELGET 80

Query: 115 DFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCV 174
           + TE + + I+  L +EY GD Y+L++KNCNHF++EL + L G++IP W+NRL       
Sbjct: 81  ELTEEEFREILNSLSEEYTGDTYNLISKNCNHFTDELCQFLTGKKIPSWINRLPREVLST 140

Query: 175 PFLQRCLPKEW 185
           PF Q  LP  W
Sbjct: 141 PFGQCLLPMLW 151


The PPPDE superfamily (after Permuted Papain fold Peptidases of DsRNA viruses and Eukaryotes), consists of predicted thiol peptidases with a circularly permuted papain-like fold. The inference of the likely DUB function of the PPPDE superfamily proteins is based on the fusions of the catalytic domain to Ub-binding PUG (PUB)/UBA domains and a novel alpha-helical Ub-associated domain (the PUL domain, after PLAP, Ufd3p and Lub1p). Length = 151

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 209
KOG0324|consensus214 100.0
PF05903151 Peptidase_C97: PPPDE putative peptidase domain; In 100.0
PF04970125 LRAT: Lecithin retinol acyltransferase; InterPro: 91.81
PF05608136 DUF778: Protein of unknown function (DUF778); Inte 81.91
>KOG0324|consensus Back     alignment and domain information
Probab=100.00  E-value=7.5e-51  Score=349.51  Aligned_cols=154  Identities=56%  Similarity=0.954  Sum_probs=139.3

Q ss_pred             CCcCEEEEEEeCCCcchhhhhcCceeeeeeEEEeCeEEeecCCcCCCCCeEeecCCCccccCCcceeEEEEEeCCcccCh
Q psy18161          2 AREPILLNVYDMLWTNDYTSTLGLGVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGSTDFTE   81 (209)
Q Consensus         2 ~~~~V~LnVYDL~~~n~~~~~lG~Gi~HTgVeV~g~Ey~FGg~~~~~sGI~~~~P~~~~~~G~~~~fresi~lG~t~~t~   81 (209)
                      ++.+|+|||||+.++|.++.++|+|||||||||+|+||+||+|+++.+|||.++|+++.    .++||++|.||.|++++
T Consensus        12 ~~~~v~lnvyd~~~~n~y~~~lGlGIfHSgIeV~g~EyayG~h~~~~sGIfe~~P~~~~----~f~fr~sI~lG~Td~~~   87 (214)
T KOG0324|consen   12 GRVPVYLNVYDLTPINKYLYWLGLGIFHSGIEVHGVEYAYGAHEYPSSGIFEVEPGNCP----EFTFRKSILLGSTDLTE   87 (214)
T ss_pred             cceeeeeeeecceehhhhhhhhcceeEeeeEEEeceeeeccccccCCCCeEeeCCCCCC----CCceeEEEEecCCCCCH
Confidence            36789999999999999999999999999999999999999999999999999999874    48999999999999999


Q ss_pred             hHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccCCCCCCccccccccChhHHHHHHHhcCCCCC
Q psy18161         82 SDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIP  161 (209)
Q Consensus        82 ~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~~~g~~Y~LL~~NCNHFs~~l~~~L~gk~iP  161 (209)
                      ++|+                                     +||++|+++|+|++||||.|||||||+++|++|+||+||
T Consensus        88 ~~v~-------------------------------------~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP  130 (214)
T KOG0324|consen   88 DDVR-------------------------------------RILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIP  130 (214)
T ss_pred             HHHH-------------------------------------HHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCcc
Confidence            9998                                     999999999999999999999999999999999999999


Q ss_pred             hHHHhhhhhhhccccccccCC-CCcCCchhhhccccc
Q psy18161        162 GWVNRLAYFSSCVPFLQRCLP-KEWLTPDALTQSINY  197 (209)
Q Consensus       162 ~~Inrla~~~~~~p~~~~~~P-~~~~~~~~~~~~~~~  197 (209)
                      +||||||++++++++ ++++| +.++++-...++...
T Consensus       131 ~winrLa~~~~~~~~-~~~~p~~~~~t~~~~~~~~~~  166 (214)
T KOG0324|consen  131 SWVNRLARAGLCSLC-NCLLPMLQNLTPVVLASSVVE  166 (214)
T ss_pred             HHHHHHHHHhhhhHH-hhcchhhhcCCcccccccccc
Confidence            999999999999777 34444 446776665555444



>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences Back     alignment and domain information
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes Back     alignment and domain information
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
3ebq_A170 Crystal Structure Of Human Pppde1 Length = 170 3e-08
2wp7_A168 Crystal Structure Of Desumoylase(Duf862) Length = 1 9e-08
>pdb|3EBQ|A Chain A, Crystal Structure Of Human Pppde1 Length = 170 Back     alignment and structure

Iteration: 1

Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 109 IQIGSTDFTESDVKRIVTELGKE-YRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRL 167 + +GST+ TE ++ LG+ +RG+ Y+L NCN FSNE+ + L G++IP ++ L Sbjct: 74 VDVGSTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDL 133 Query: 168 AYFSSCVPFLQRCLP 182 PF Q P Sbjct: 134 PSEVLSTPFGQALRP 148
>pdb|2WP7|A Chain A, Crystal Structure Of Desumoylase(Duf862) Length = 168 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query209
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 9e-40
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Length = 168 Back     alignment and structure
 Score =  133 bits (335), Expect = 9e-40
 Identities = 42/184 (22%), Positives = 68/184 (36%), Gaps = 51/184 (27%)

Query: 5   PILLNVYDML-WTNDYTSTLGLG-----VFHSGIEVYGVEYAYGGHQYPFSGIFRISPRD 58
           P+ L VYD+        S + LG     ++H+ I V+  E+ +G       GI   +P  
Sbjct: 8   PVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGSS-----GISSCTPGG 62

Query: 59  AKELGEQFAFRESIQIGSTDFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTE 118
                        + +G+T+ TE      ++ LG+                         
Sbjct: 63  T----LLGPPDSVVDVGNTEVTEEIFLEYLSSLGES------------------------ 94

Query: 119 SDVKRIVTELGKEYRGDRYHLMNKNCNHFSNELTKILCGQEIPGWVNRLAYFSSCVPFLQ 178
                        +RG+ Y+L   NCN FSNE+ + L G++IP ++  L       PF Q
Sbjct: 95  ------------LFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSYITDLPSEVLSTPFGQ 142

Query: 179 RCLP 182
              P
Sbjct: 143 ALRP 146


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query209
2wp7_A168 PPPDE peptidase domain-containing protein 2; hydro 100.0
2lkt_A125 Retinoic acid receptor responder protein 3; TIG3, 93.1
4dot_A140 Group XVI phospholipase A2; alpha/beta fold, phosp 92.8
4dpz_X137 HRAS-like suppressor 2; alpha/beta fold, enzyme ph 92.53
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A Back     alignment and structure
Probab=100.00  E-value=1.2e-49  Score=331.44  Aligned_cols=134  Identities=34%  Similarity=0.591  Sum_probs=122.2

Q ss_pred             cCEEEEEEeCCC-cchhhh--hcCc---eeeeeeEEEeCeEEeecCCcCCCCCeEeecCCCccccCCcceeEEEEEeCCc
Q psy18161          4 EPILLNVYDMLW-TNDYTS--TLGL---GVFHSGIEVYGVEYAYGGHQYPFSGIFRISPRDAKELGEQFAFRESIQIGST   77 (209)
Q Consensus         4 ~~V~LnVYDL~~-~n~~~~--~lG~---Gi~HTgVeV~g~Ey~FGg~~~~~sGI~~~~P~~~~~~G~~~~fresi~lG~t   77 (209)
                      .+|+||||||++ +|+.++  ++|+   |||||||||||+||+||+     +||++++|+.. ++|   .||++|.||.|
T Consensus         7 ~~V~LnVYDLs~g~a~~~s~~~lG~~i~Gi~HtgV~V~G~EY~FG~-----~GI~~~~Pg~~-~~g---~~resi~lG~T   77 (168)
T 2wp7_A            7 YPVKLYVYDLSKGLARRLSPIMLGKQLEGIWHTSIVVHKDEFFFGS-----SGISSCTPGGT-LLG---PPDSVVDVGNT   77 (168)
T ss_dssp             EEEEEEEEETTTTHHHHHHHHHTSSCCCCCEEEEEEETTEEEEEET-----TEEEEESTTCS-TTC---SCSEEEEEEEE
T ss_pred             cEEEEEEEECChHHHHHhhHHHhCCCcCcEEEEEEEECCEEEEEcC-----CCeEecCCCcC-CCC---CeEEEEECCCc
Confidence            459999999998 567664  6897   999999999999999996     59999999864 444   56999999999


Q ss_pred             ccChhHHHHHHHhhccccccccccccCCcceeeeccccCCHHHHHHHHHHhccC-CCCCCccccccccChhHHHHHHHhc
Q psy18161         78 DFTESDVKRIVTELGKEYRGDRYHLMNKGESIQIGSTDFTESDVKRIVTELGKE-YRGDRYHLMNKNCNHFSNELTKILC  156 (209)
Q Consensus        78 ~~t~~ev~~~~~~l~~~~~~~~~~~~~~~~~~~~g~t~~~~~~v~~il~~l~~~-~~g~~Y~LL~~NCNHFs~~l~~~L~  156 (209)
                      ++++++|+                                     ++|++|+++ |++++||||+||||||||++|++|+
T Consensus        78 ~~~~~~~~-------------------------------------~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~  120 (168)
T 2wp7_A           78 EVTEEIFL-------------------------------------EYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLT  120 (168)
T ss_dssp             CCCHHHHH-------------------------------------HHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHH
T ss_pred             cCCHHHHH-------------------------------------HHHHHhhhccCCcccCchhhhccchhHHHHHHHhc
Confidence            99998888                                     999999998 9999999999999999999999999


Q ss_pred             CCCCChHHHhhhhhhhccccccccCCC
Q psy18161        157 GQEIPGWVNRLAYFSSCVPFLQRCLPK  183 (209)
Q Consensus       157 gk~iP~~Inrla~~~~~~p~~~~~~P~  183 (209)
                      ||+||+||||+|+.++++|++|++.|.
T Consensus       121 gk~IP~wInrl~~~vl~tp~G~~l~~~  147 (168)
T 2wp7_A          121 GRKIPSYITDLPSEVLSTPFGQALRPF  147 (168)
T ss_dssp             SCCCCHHHHTHHHHHHTSHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHhcCcHHHHHHHH
Confidence            999999999999999999999998774



>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens} Back     alignment and structure
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00