Psyllid ID: psy18202
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | 2.2.26 [Sep-21-2011] | |||||||
| Q4V7P7 | 452 | Sorting nexin-30 OS=Xenop | N/A | N/A | 0.834 | 0.659 | 0.334 | 5e-50 | |
| Q5VWJ9 | 437 | Sorting nexin-30 OS=Homo | yes | N/A | 0.834 | 0.681 | 0.325 | 4e-49 | |
| Q8CE50 | 437 | Sorting nexin-30 OS=Mus m | yes | N/A | 0.834 | 0.681 | 0.317 | 4e-49 | |
| Q28E02 | 446 | Sorting nexin-30 OS=Xenop | yes | N/A | 0.834 | 0.668 | 0.331 | 9e-47 | |
| Q566W7 | 430 | Sorting nexin-30 OS=Danio | yes | N/A | 0.829 | 0.688 | 0.308 | 2e-44 | |
| Q9CY18 | 387 | Sorting nexin-7 OS=Mus mu | no | N/A | 0.823 | 0.759 | 0.313 | 6e-44 | |
| Q4R5U9 | 387 | Sorting nexin-7 OS=Macaca | N/A | N/A | 0.843 | 0.777 | 0.308 | 4e-43 | |
| Q9UNH6 | 387 | Sorting nexin-7 OS=Homo s | no | N/A | 0.843 | 0.777 | 0.308 | 2e-42 | |
| Q5B797 | 487 | Sorting nexin-4 OS=Emeric | yes | N/A | 0.932 | 0.683 | 0.245 | 2e-18 | |
| Q6FPT9 | 430 | Sorting nexin-4 OS=Candid | yes | N/A | 0.938 | 0.779 | 0.238 | 5e-18 |
| >sp|Q4V7P7|SNX30_XENLA Sorting nexin-30 OS=Xenopus laevis GN=snx30 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 198 bits (504), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/347 (33%), Positives = 183/347 (52%), Gaps = 49/347 (14%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL ET P+H IPPLPEK + ++R+S+EF+ R K L
Sbjct: 136 EFDLPEYSVRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKAL 195
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+ HPVLS N H +FLTAK + + HKK LL+KM ES +T+ Y L
Sbjct: 196 DKFLKRIADHPVLSFNEHFNVFLTAK--DLNSHKKQGVTLLSKMGESVRYVTSGY---KL 250
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R+ +EF + Y+ K+ ++I R+ KE +Y+ E ++ V +TW+G E +L+
Sbjct: 251 RNRPAEFATVTDYLDTFALKLGTIDRIAQRIIKEEVEYLMELREYGPVYSTWSGLEKELN 310
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS V + + L E E +++Y++Y +++K VL +RD +QAE++
Sbjct: 311 EPLEGVSACVGNCCTALEE-LTEDMSEDFMPVIREYILYSESMKTVLKKRDQVQAEYEAK 369
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
E K E+ S+ PT
Sbjct: 370 SEAAALKREER---------STVPTD---------------------------------- 386
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E C +K++ N L++D++RW+ K+ D +++L+ +AD+ I YY++
Sbjct: 387 VEKCQDKVECFNADLKADMDRWQNNKRQDFRQLLMGVADKNIQYYEK 433
|
May be involved in several stages of intracellular trafficking. Xenopus laevis (taxid: 8355) |
| >sp|Q5VWJ9|SNX30_HUMAN Sorting nexin-30 OS=Homo sapiens GN=SNX30 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 185/347 (53%), Gaps = 49/347 (14%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL +KL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 121 EFDLPEYSVRRRYQDFDWLRSKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 180
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H IFLTAK + + +KK LL +M ES ++T Y L
Sbjct: 181 DKFLKRITDHPVLSFNEHFNIFLTAK--DLNAYKKQGIALLTRMGESVKHVTGGY---KL 235
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 236 RTRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 295
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 296 EPLEGVSACIGNCSTALEE-LTDDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYE-- 352
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
+ + +L K EDR PK+ +
Sbjct: 353 ------------------------------AKLEAVALRK---EDR--------PKVPAD 371
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E C ++++ N L++D+ERW+ K+ D +++L+ +AD+ I YY++
Sbjct: 372 VEKCQDRMECFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 418
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May be involved in several stages of intracellular trafficking. Homo sapiens (taxid: 9606) |
| >sp|Q8CE50|SNX30_MOUSE Sorting nexin-30 OS=Mus musculus GN=Snx30 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/347 (31%), Positives = 185/347 (53%), Gaps = 49/347 (14%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 121 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 180
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + + +KK LL+++ ES ++T Y L
Sbjct: 181 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSRVGESVKHVTGGY---KL 235
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF S Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 236 RSRPLEFAAISDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 295
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 296 EPLEGVSACIGNCSTALEE-LTDDITEEFLPVLREYVLYSDSMKGVLKKRDQVQAEYEAK 354
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
E + + E+ PK+ +
Sbjct: 355 LEAVALRKEER-------------------------------------------PKVPAD 371
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E C ++++ N L++D+ERW+ K++D +++L+ +AD+ I YY++
Sbjct: 372 VEKCQDRMECFNADLKADMERWQSNKRHDFRQLLVGLADKNIQYYEK 418
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May be involved in several stages of intracellular trafficking. Mus musculus (taxid: 10090) |
| >sp|Q28E02|SNX30_XENTR Sorting nexin-30 OS=Xenopus tropicalis GN=snx30 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/347 (33%), Positives = 183/347 (52%), Gaps = 49/347 (14%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E +RRRY DF WL NKL ET P+H IPPLPEK + ++R+S+EF+ R K L
Sbjct: 130 EFDLPEYSIRRRYQDFDWLRNKLEETQPTHFIPPLPEKFVVKGVVDRFSEEFVETRRKAL 189
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+ HPVLS N H +FLTAK + + HKK LL+KM ES +T+ Y L
Sbjct: 190 DKFLKRIADHPVLSFNEHFNVFLTAK--DLNSHKKQGITLLSKMGESVRYVTSGY---KL 244
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R+ EF + Y+ K+ ++I R+ KE +Y+ E ++ V +TW+G E +L+
Sbjct: 245 RNRPVEFATITDYLDTFQLKLGTIDRIAQRIIKEEVEYLMELREYGPVYSTWSGLERELN 304
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS V ++ + L E E +++Y++Y +++K VL +RD +QAE++
Sbjct: 305 EPLEGVSACVGNCSTALEE-LTEDMSEDFLPVIREYMLYSESMKTVLKKRDQVQAEYEAK 363
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
E K E+ S+ PT
Sbjct: 364 AEAAALKREER---------STVPTD---------------------------------- 380
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E C +K++ N L++D++RW+ K+ D +++L+ +AD+ I YY++
Sbjct: 381 VEKCQDKVECFNADLKADMDRWQNNKRQDFRQLLMGMADKNIQYYEK 427
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May be involved in several stages of intracellular trafficking. Xenopus tropicalis (taxid: 8364) |
| >sp|Q566W7|SNX30_DANRE Sorting nexin-30 OS=Danio rerio GN=snx30 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (456), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 177/347 (51%), Gaps = 51/347 (14%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL KL ++ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 112 EFDLPEYSVRRRYQDFDWLRIKLEDSQPTHLIPPLPEKFVMKGVVDRFSEEFVETRRKAL 171
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+RV HPVLS N H FL+AK ++K+ LL KM ES +T Y L
Sbjct: 172 DKFLKRVADHPVLSFNEHFNAFLSAK----DLNKRQGLALLTKMGESVKYVTGGY---KL 224
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF +Y+ +K+ ++I R+ KE+ +++ E ++ V ++W+ +E L
Sbjct: 225 RGRPVEFAAMGEYLDMFTQKLGTIDRIAQRIIKEQTEFLMELREYGPVYSSWSSFEEDLH 284
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS V +S + L E E +++Y++YI+++K VL +RD +QAE++
Sbjct: 285 EPLEGVSGCVSNCSSALEE-LTEDMSEDFLPVLREYVLYIESMKNVLKKRDQVQAEYE-- 341
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
T + + +D + PT
Sbjct: 342 -------TKLEAVVFREDKKTPMPTD---------------------------------- 360
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E C ++++ N L++D +RW+ K+ D +++L +AD+ I YY++
Sbjct: 361 VEKCQDRVECFNADLKADWDRWQNNKRQDFRQLLTGMADKNIQYYEK 407
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May be involved in several stages of intracellular trafficking. Danio rerio (taxid: 7955) |
| >sp|Q9CY18|SNX7_MOUSE Sorting nexin-7 OS=Mus musculus GN=Snx7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 111/354 (31%), Positives = 172/354 (48%), Gaps = 60/354 (16%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N +FLTA+ E S +KK PGLL++M ++ + + + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKVFLTAQAEELSSYKKQGPGLLSRMGQTVRAVAS--SMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL- 180
++ EF + + +I +KI+ +KI R+YKE +DY E ++ + W+ E +L
Sbjct: 180 KNRPEEFMEMNNFIETFSQKINLIDKISQRIYKEERDYFDEMKEYGPIHILWSASEEELV 239
Query: 181 ------SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVI 234
+ I Q KA + + L+ HE Y++Y + + V+ RRD I
Sbjct: 240 DTLKGMAGCIEQCCKATEKRMAGLSEALLPVVHE--------YVLYSEMLVGVMKRRDQI 291
Query: 235 QAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTA 294
Q E D ++ E LT K +D
Sbjct: 292 QTELD----------SKVEALTYKKAD--------------------------------- 308
Query: 295 IPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
I LT ++ ++K++ ANN L++D ERW+ KNDL+ A+Q I YY+Q
Sbjct: 309 IDLLTEEIGKLEDKVECANNALKADWERWKQNMKNDLRSAFTDTAEQNIRYYEQ 362
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May be involved in several stages of intracellular trafficking. Mus musculus (taxid: 10090) |
| >sp|Q4R5U9|SNX7_MACFA Sorting nexin-7 OS=Macaca fascicularis GN=SNX7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 175/347 (50%), Gaps = 46/347 (13%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N IFLTA+ E S HKK PGLL++M ++ + + + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVRAVAS--SMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
++ EF + + +I +KI+ +KI R+YKE ++Y E ++ + W+ E L
Sbjct: 180 KNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLV 239
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ V+ +D + + E +++Y++Y + + V+ RRD IQAE D
Sbjct: 240 DTLKDVAGCIDRCCKATEKRM-SGLSEALLPVVREYVLYSEMLMGVMKRRDQIQAELD-- 296
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
++ E LT K +D+ +P+ +
Sbjct: 297 --------SKVEALTYKKTDTD------------------------------LLPEEIGK 318
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
LE +K++ ANN L++D ERW+ +ND+K +A++ I YY+Q
Sbjct: 319 LE---DKVECANNALKADWERWKQNMQNDIKLAFTDMAEENIHYYEQ 362
|
May be involved in several stages of intracellular trafficking. Macaca fascicularis (taxid: 9541) |
| >sp|Q9UNH6|SNX7_HUMAN Sorting nexin-7 OS=Homo sapiens GN=SNX7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 173 bits (438), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/347 (30%), Positives = 174/347 (50%), Gaps = 46/347 (13%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N IFLTA+ E S HKK PGLL++M ++ + + + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVRAVAS--SMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
++ EF + + +I +KI+ +KI R+YKE ++Y E ++ + W+ E L
Sbjct: 180 KNRPEEFMEMNNFIELFSQKINLIDKISQRIYKEEREYFDEMKEYGPIHILWSASEEDLV 239
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ V+ +D + + E + +Y++Y + + V+ RRD IQAE D
Sbjct: 240 DTLKDVASCIDRCCKATEKRM-SGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELD-- 296
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
++ E LT K +D+ +P+ +
Sbjct: 297 --------SKVEVLTYKKADTD------------------------------LLPEEIGK 318
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
LE +K++ ANN L++D ERW+ +ND+K +A++ I YY+Q
Sbjct: 319 LE---DKVECANNALKADWERWKQNMQNDIKLAFTDMAEENIHYYEQ 362
|
May be involved in several stages of intracellular trafficking. Homo sapiens (taxid: 9606) |
| >sp|Q5B797|SNX4_EMENI Sorting nexin-4 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=snx4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 91/371 (24%), Positives = 165/371 (44%), Gaps = 38/371 (10%)
Query: 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL--NRYSKEFILCRMKL 60
F + VRRR+ DFV+L+ L P+ +PPLP+KH +E++ +R+ EF R
Sbjct: 103 FQKADFTVRRRFTDFVFLYKTLYREYPACAVPPLPDKHK-MEYVRGDRFGAEFTTRRAWS 161
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSES----FYNLTNIY 116
L +FL+R+T HPVL IFL + M + S + F N T+ +
Sbjct: 162 LHRFLKRLTLHPVLRRAPLLAIFLESPDWNAHMRLRGSRASTSGSDGGGTGIFDNFTDTF 221
Query: 117 TTMSLRHHHSE--FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA 174
+ H + F + + L E ++ EKI R+ + D ++ + A
Sbjct: 222 VNAFTKVHKPDRRFIEVREKADKLDEDLTHVEKIVARVARREADLETDYNDLATQFRKLV 281
Query: 175 GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSH----PMKDYLMYIDAVKQVLAR 230
EP++ ++ + +V+ TA KNL +H ++D YI +VK +L
Sbjct: 282 PLEPEVEVPLQVFAASVEETARGIKNL-----KDHTDQNYLGSLRDMEAYILSVKSLLKT 336
Query: 231 RDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATS--STNSYSLWKSTSED-- 286
R+ Q + + + K AE++ L +++P+S A++ +++ S +S ED
Sbjct: 337 REQKQLDFEALVDYRNKAVAERDSL------AANPSSYYASNPLTSSPASFIRSKMEDMR 390
Query: 287 ----------RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336
R+ KL I +LT ++E + + + ++ + K + + L
Sbjct: 391 GVDHEQSRRERMRKLELRIDELTREVESAKTTSEMFDEEVVREVADFERIKAIEFRDSLG 450
Query: 337 KIADQQIAYYQ 347
+A+Q I +YQ
Sbjct: 451 ALAEQHIEFYQ 461
|
Required for cytoplasm to vacuole transport (Cvt) and pexophagy. Involved in the fusion between the pexophagosome and the vacuole. Also involved in the separation or division of vacuoles throughout the entire life cycle of the cells. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) |
| >sp|Q6FPT9|SNX4_CANGA Sorting nexin-4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SNX4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 84/352 (23%), Positives = 163/352 (46%), Gaps = 17/352 (4%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL--NRYSKEFILCRMKLLD 62
D +V RRYND V LH+ L P+ IIPPLP+K +L+++ +R+ + F R L
Sbjct: 75 DDIIVVHRRYNDVVLLHDILQNDHPTCIIPPLPDK-KVLQYIAGDRFGRRFTQRRCHSLQ 133
Query: 63 QFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLR 122
FLRRV+ HP+LS + IFL E+ ++K+ G L + + +
Sbjct: 134 NFLRRVSQHPILSTSKVLEIFLVGN--EWDTYRKNIAGTLQNAQKEDVTDAVMNAFKKVH 191
Query: 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW----AGYEP 178
+ + EF + L ++ K+ R+ K+ + + + + + L +
Sbjct: 192 NQNEEFTEIRDRSDKLDNSVNRINKVFHRVVKKNEAIIEDYSKLGLTLQELQELVSSDND 251
Query: 179 QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEH 238
+L+ ++ + V + ++L + +E+ +KD YI ++KQ + +D Q ++
Sbjct: 252 KLADSLKVFIEGVTQFSYGLQDLNMFIDYEY-LIDLKDLSHYIGSMKQTMRLKDQKQIDY 310
Query: 239 DMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW--KSTSEDRLEKLSTAIP 296
+ + L K EK L S + TS + + +++ D++ KL + I
Sbjct: 311 EELSDYLTKSIKEKNNLI-----SGYGGGNFLTSKLEELAGYNQEASRRDKINKLESTIS 365
Query: 297 KLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
LT++LE + T +++++ K ++LK L +AD+ I +Y++
Sbjct: 366 SLTTELETAKKVADTFEQETLKEVKKFEEIKNDELKISLNNLADENIKFYER 417
|
Required for cytoplasm to vacuole transport (Cvt) and pexophagy. Involved in the fusion between the pexophagosome and the vacuole. Also involved in the separation or division of vacuoles throughout the entire life cycle of the cells. Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| 156554601 | 471 | PREDICTED: sorting nexin-30-like [Nasoni | 0.927 | 0.702 | 0.455 | 8e-84 | |
| 307176960 | 476 | Sorting nexin-30 [Camponotus floridanus] | 0.932 | 0.699 | 0.464 | 1e-83 | |
| 350424617 | 475 | PREDICTED: sorting nexin-30-like [Bombus | 0.932 | 0.701 | 0.455 | 1e-83 | |
| 340726740 | 475 | PREDICTED: sorting nexin-30-like [Bombus | 0.932 | 0.701 | 0.458 | 2e-83 | |
| 307200847 | 475 | Sorting nexin-30 [Harpegnathos saltator] | 0.932 | 0.701 | 0.458 | 2e-82 | |
| 383851305 | 475 | PREDICTED: sorting nexin-30-like [Megach | 0.932 | 0.701 | 0.452 | 4e-82 | |
| 328784676 | 468 | PREDICTED: sorting nexin-30-like [Apis m | 0.929 | 0.709 | 0.456 | 8e-82 | |
| 380020486 | 478 | PREDICTED: sorting nexin-30-like [Apis f | 0.929 | 0.694 | 0.462 | 9e-82 | |
| 332016777 | 477 | Sorting nexin-30 [Acromyrmex echinatior] | 0.929 | 0.696 | 0.448 | 1e-80 | |
| 91090194 | 393 | PREDICTED: similar to sorting nexin fami | 0.929 | 0.844 | 0.402 | 1e-67 |
| >gi|156554601|ref|XP_001604661.1| PREDICTED: sorting nexin-30-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 317 bits (811), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 233/349 (66%), Gaps = 18/349 (5%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PE+ + E IVRRRYNDF+WL KLVE+ P+HIIPP+P KHSLL L+RYSKEFI+ RMKL
Sbjct: 108 PEYEEGEYIVRRRYNDFIWLRQKLVESYPAHIIPPMPGKHSLLAQLDRYSKEFIIARMKL 167
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL R+ +HP+LS + + +FLTAK AEF +++K+ ++ K+S+S L ++ +
Sbjct: 168 LHIFLNRMVNHPILSYDKNLHVFLTAKPAEFLVYRKNRGNVMGKVSDS---LQSMASNGV 224
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ H EFEQ Y +L EK+S +KI R++KER+DY+ E HQ + WA EPQL
Sbjct: 225 VKQRHLEFEQARDYCVSLSEKLSTIDKISRRIHKERQDYLVELHQLHPIFTLWATSEPQL 284
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+ ++ V+ A+++ AS H+ LL +E ++Y+ YIDAVK L+RRD +Q E++M
Sbjct: 285 ARTLQAVAGAIESNASAHQKLLDTAVNEE-----REYITYIDAVKDALSRRDTMQVEYEM 339
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE-DRLEKLSTAIPKLT 299
EEL K+ E++Q+ +S TSS S WK+ S ++L++LS IP+L+
Sbjct: 340 TAEELTKRKTERDQII---------SSGNITSSRWDNSFWKTESNGEKLDRLSQTIPRLS 390
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+E+ ++L+ AN +LRSDLERW +EK+ DLK IL+ +ADQQI +YQQ
Sbjct: 391 KVVEVLQDRLECANENLRSDLERWNIEKRTDLKNILIAMADQQIGHYQQ 439
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307176960|gb|EFN66266.1| Sorting nexin-30 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 316 bits (809), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 162/349 (46%), Positives = 233/349 (66%), Gaps = 16/349 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PEF + E IVRRRYNDF+WL KLV+ P+HIIPP+P KH+LL L+RYSKEFI+ RM+L
Sbjct: 112 PEFEEGEYIVRRRYNDFIWLRQKLVDNYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMRL 171
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL RV +HP+LS + + IFLT K AEF +++K+ +L KM++S L NI TT +
Sbjct: 172 LHIFLNRVVNHPILSCDKNLHIFLTTKPAEFLIYRKNRGNVLGKMTDS---LQNIATTYT 228
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ HH EFEQ Y + L EK+SA +KI R+YKER+DY+ E HQ + W EP+L
Sbjct: 229 MKQHHLEFEQIRDYCTALSEKLSAIDKINHRIYKERQDYLLELHQLHPIFTLWTTSEPEL 288
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+S++ ++KAV+T A H+ LL E+ + ++Y+ YI+AVK L+RRD +Q E+++
Sbjct: 289 ASILLAIAKAVETNAIAHQKLL-----ENVPNDEREYISYIEAVKNALSRRDSMQIEYEI 343
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLT 299
+ L KK EK+QL T+ T + SLWK+ S D +LE+L IP+L
Sbjct: 344 TVDVLAKKRLEKDQLIGN-------TNYTIPAQGWGGSLWKAESRDEKLERLGQTIPRLA 396
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q+EI ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+ I +YQQ
Sbjct: 397 KQVEILQDRVECANENLRSDLQRWNVEKQQDLKNMLIAMADRHIRHYQQ 445
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350424617|ref|XP_003493855.1| PREDICTED: sorting nexin-30-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/349 (45%), Positives = 232/349 (66%), Gaps = 16/349 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PEF + E IVRRRYNDF+WL KLV+ P+HIIPP+P KH+LL L+RYSKEFI+ RMKL
Sbjct: 111 PEFEEGEYIVRRRYNDFIWLRQKLVDLYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMKL 170
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL RV +HP+LS + + IFLT K AEF +H+K+ +L KM++S N+ + YT
Sbjct: 171 LHVFLNRVVNHPILSCDKNLYIFLTTKPAEFLIHRKNRGNVLVKMTDSLQNIASTYT--- 227
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ H EFEQ Y + L EK++ +KI R++KER+DY+ E HQ + WA EP+L
Sbjct: 228 MKQRHFEFEQIRDYCTALSEKLATVDKINHRIHKERQDYLLELHQLHPIFTLWATSEPEL 287
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+S + ++KA++ A H+ LL E+ ++ ++Y+ Y+DAV+ L+RRD +Q E++M
Sbjct: 288 ASFLLAIAKAIECNAVAHQKLL-----ENVTNEEREYISYVDAVRNALSRRDSMQIEYEM 342
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLT 299
EEL KK EK+QL TS +++ SLWK+ S D +LE+L IP+L
Sbjct: 343 TVEELAKKRLEKDQLMGL-------TSGNSSTQNWGGSLWKAESRDEKLERLGQTIPRLA 395
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q E+ ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+QI +YQQ
Sbjct: 396 KQTELLQDRVECANENLRSDLQRWNVEKQMDLKNMLISMADRQIRHYQQ 444
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726740|ref|XP_003401711.1| PREDICTED: sorting nexin-30-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 160/349 (45%), Positives = 233/349 (66%), Gaps = 16/349 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PEF + E IVRRRYNDF+WL KLV+ P+HIIPP+P KH+LL L+RYSKEFI+ RMKL
Sbjct: 111 PEFEEGEYIVRRRYNDFIWLRQKLVDLYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMKL 170
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL RV +HP+LS + + IFLT K AEF +H+K+ +L KM++S L NI +T +
Sbjct: 171 LHVFLNRVVNHPILSCDKNLYIFLTTKPAEFLIHRKNRGNVLVKMTDS---LQNIASTCT 227
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ H EFEQ Y + L EK++ +KI R++KER+DY+ E HQ + WA EP+L
Sbjct: 228 MKQRHFEFEQIRDYCTALSEKLATVDKINHRIHKERQDYLLELHQLHPIFTLWATSEPEL 287
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+S + ++KA++ A H+ LL E+ ++ ++Y+ Y+DAV+ L+RRD +Q E++M
Sbjct: 288 ASFLLAIAKAIECNAVAHQKLL-----ENVTNEEREYISYVDAVRNALSRRDSMQIEYEM 342
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLT 299
EEL KK EK+QL TS +++ SLWK+ S D +LE+L IP+L
Sbjct: 343 TVEELAKKRLEKDQLMGH-------TSGNSSTQNWGGSLWKAESRDEKLERLGQTIPRLA 395
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q E+ ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+QI +YQQ
Sbjct: 396 KQTELLQDRVECANENLRSDLQRWNVEKQMDLKNMLISMADRQIRHYQQ 444
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307200847|gb|EFN80900.1| Sorting nexin-30 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/349 (45%), Positives = 229/349 (65%), Gaps = 16/349 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PEF + E IVRRRYNDF+WL KLV+T P+HIIPP+P KH+LL L+RYSKEF++ RMKL
Sbjct: 111 PEFEEGEYIVRRRYNDFIWLRQKLVDTYPTHIIPPMPGKHTLLAQLDRYSKEFVIARMKL 170
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL RV +HP+LS + IFLT K AEF +H+K+ +L KM++S N+ + YT
Sbjct: 171 LHIFLNRVVNHPILSCDKSLHIFLTTKPAEFLVHRKNRGNVLVKMTDSLQNIASTYT--- 227
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ H EFEQ Y + L EK+S +KI R++KER+DY+ E HQ + WA EP+L
Sbjct: 228 MKQRHLEFEQIRDYCTALSEKLSTIDKINHRIHKERQDYLLELHQLYPIFTLWATSEPEL 287
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+ ++ ++KAVD+ A H+ LL E+ + ++Y+ YI+AVK L+RRD +Q E+++
Sbjct: 288 APILLAIAKAVDSNALAHQKLL-----ENVPNDEREYVSYIEAVKSALSRRDSMQIEYEI 342
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLT 299
+EL K+ EK+QL TS T S SLWK+ S D +LE+L IP+L
Sbjct: 343 TVDELAKRRLEKDQLVGV-------TSCTVPSQGWGGSLWKAESRDEKLERLGQTIPRLA 395
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q EI ++++ AN +LRSDL+RW +EK+ DLK +L+ + D+ I +YQQ
Sbjct: 396 KQAEILQDRVECANENLRSDLQRWNIEKQVDLKNMLISMTDRHIRHYQQ 444
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383851305|ref|XP_003701174.1| PREDICTED: sorting nexin-30-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 158/349 (45%), Positives = 231/349 (66%), Gaps = 16/349 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
PEF + E IVRRRYNDF+WL KLV++ P+HIIPP+P KH+LL L+RYSKEFI+ RMKL
Sbjct: 111 PEFEEGEYIVRRRYNDFIWLRQKLVDSYPTHIIPPMPGKHTLLAQLDRYSKEFIVARMKL 170
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS 120
L FL RV +HP+LS + + IFLT+K AEF +H+K+ +L KM++S N+ + YT
Sbjct: 171 LHIFLNRVVNHPILSCDKNLHIFLTSKPAEFLIHRKNRGNVLVKMTDSLQNIASTYT--- 227
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
++ H EFEQ +Y L EK++ +KI R+ K+R+DY+ E HQ + WA EP+L
Sbjct: 228 MKQRHFEFEQIREYCIALSEKLATIDKINHRIQKDRQDYLVELHQLHPIFTLWATSEPEL 287
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+ ++ ++KA++ A H+ LL E+ + ++Y+ YIDAVK L+RRD +Q E++M
Sbjct: 288 APILLAIAKAIECNAVAHQKLL-----ENVPNEEREYISYIDAVKGALSRRDSMQIEYEM 342
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLT 299
E+L KK EK+QL S ++ SLWK+ S D +LE+L AIP+L
Sbjct: 343 TIEDLAKKKLEKDQLM-------GIVSGNISTQNWGGSLWKAESRDEKLERLGQAIPRLA 395
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q E+ ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+QI +YQQ
Sbjct: 396 KQAELLQDRVECANENLRSDLQRWNVEKQMDLKNMLILMADRQIRHYQQ 444
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328784676|ref|XP_392678.3| PREDICTED: sorting nexin-30-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 159/348 (45%), Positives = 230/348 (66%), Gaps = 16/348 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF + E IVRRRYNDF+WL KLV++ P+HIIPP+P KH+LL L+RYSKEFI+ RMKLL
Sbjct: 115 EFEEGEYIVRRRYNDFIWLRQKLVDSYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMKLL 174
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
FL RV +HP+LS + + IFLT K AEF +H+K+ +L KM++S N+ + YT +
Sbjct: 175 HMFLNRVINHPILSYDKNLYIFLTTKPAEFLIHRKNRGNVLIKMTDSLQNIASTYT---M 231
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ H EFEQ Y L EK++ ++I R++KER+DY+ E HQ + WA EP+L+
Sbjct: 232 KQRHFEFEQIRDYCIALNEKLATIDRINHRIHKERQDYLLELHQLHPIFTLWATSEPELA 291
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ ++KA++ A H+ LL E + ++Y+ Y+DAVK L+RRD +Q E+++
Sbjct: 292 PFLMAIAKAIECNAMAHQKLL-----ESTPNEEREYISYVDAVKSALSRRDSMQIEYEIT 346
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLTS 300
EEL KK EK+QL DS+S +ST SLWK+ S D +LE+L IP+L
Sbjct: 347 VEELAKKRLEKDQLM----DSTSGNTSTQNWGG---SLWKAESRDEKLERLGQTIPRLAK 399
Query: 301 QLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q E+ ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+QI +YQQ
Sbjct: 400 QAELLQDRVECANENLRSDLQRWNVEKQMDLKNMLISMADRQIRHYQQ 447
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380020486|ref|XP_003694114.1| PREDICTED: sorting nexin-30-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 161/348 (46%), Positives = 229/348 (65%), Gaps = 16/348 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF + E IVRRRYNDF+WL KLV + P+HIIPP+P KH+LL L+RYSKEFI+ RMKLL
Sbjct: 115 EFEEGEYIVRRRYNDFIWLRQKLVNSYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMKLL 174
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
FL RV +HP+LS + + IFLT K AEF +H+K+ +L KM++S N+ + YT +
Sbjct: 175 HIFLNRVINHPILSYDKNLYIFLTTKPAEFLVHRKNRGNVLIKMTDSLQNIASTYT---M 231
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ H EFEQ Y L EK+ +KI R++KER+DY+ E HQ + WA EP+L+
Sbjct: 232 KQCHFEFEQIRDYCIALNEKLITIDKINNRIHKERQDYLLELHQLHPIFTLWATSEPELA 291
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
S + ++KA++ A H+ LL E + ++Y+ Y+DAVK L+RRD +Q E+++
Sbjct: 292 SFLMAIAKAIECNAMAHQKLL-----ESTPNEEREYISYVDAVKSALSRRDSMQIEYEIT 346
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLTS 300
EEL KK EK+QL DS+S +ST SLWK+ S D +LE+L IP+L
Sbjct: 347 VEELAKKRLEKDQLM----DSTSGNTSTQNWGG---SLWKAESRDEKLERLGQTIPRLAK 399
Query: 301 QLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q E+ ++++ AN +LRSDL+RW +EK+ DLK +L+ +AD+QI +YQQ
Sbjct: 400 QAELLQDRMECANENLRSDLQRWNVEKQMDLKNMLISMADRQIRHYQQ 447
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332016777|gb|EGI57598.1| Sorting nexin-30 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 156/348 (44%), Positives = 229/348 (65%), Gaps = 16/348 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF + E +VRRRYNDF+WL KLV+T P+HIIPP+P KH+LL L+RYSKEFI+ RMKLL
Sbjct: 114 EFEEGEYVVRRRYNDFIWLRQKLVDTYPTHIIPPMPGKHTLLAQLDRYSKEFIIARMKLL 173
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
FL RV +HP+LS + + IFLT K +EF +H+K+ +L K+++S N+ + YT +
Sbjct: 174 HIFLNRVVNHPILSCDKNLHIFLTTKPSEFLVHRKNRGNMLGKVTDSLQNIASTYT---I 230
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ H EFEQ Y + L EK+SA +KI R++KER+DY+ E HQ + WA EP+L+
Sbjct: 231 KQRHLEFEQIRDYCTALGEKLSAIDKINHRIHKERQDYLLELHQLHPIFTLWATSEPELT 290
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ ++KAV+ A H+ LL E+ + ++Y+ YI+AVK L+RRD +Q E+++
Sbjct: 291 PILLAIAKAVEANAMAHQKLL-----ENVPNDEREYVSYIEAVKNALSRRDSMQIEYEIT 345
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED-RLEKLSTAIPKLTS 300
+ L K+ EK+QL TS T + SLWK+ S D +LE+L AIP+L
Sbjct: 346 VDVLAKRRLEKDQLVGN-------TSYTIPAQGWGGSLWKAESRDEKLERLGQAIPRLAK 398
Query: 301 QLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
Q EI ++++ AN +LRSD +RW +EK+ DLK +L+ +AD+ I +YQQ
Sbjct: 399 QAEILQDRVECANENLRSDFQRWNVEKQQDLKNMLITMADRHIRHYQQ 446
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090194|ref|XP_967096.1| PREDICTED: similar to sorting nexin family member 30 [Tribolium castaneum] gi|270013469|gb|EFA09917.1| hypothetical protein TcasGA2_TC012068 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 140/348 (40%), Positives = 219/348 (62%), Gaps = 16/348 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
E+ + E +VRRRYNDF+WL KL E P I+PPLP KHSL+ L+RYSK+FIL RMK L
Sbjct: 37 EYSENEYVVRRRYNDFIWLRQKLTECHPFCIVPPLPGKHSLIGQLDRYSKDFILLRMKAL 96
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMS- 120
+ F+ R+ +HP+LS N H FLTAK +F++H++ NK+ L++ +T S
Sbjct: 97 NVFVSRIVNHPILSCNEHFKTFLTAKQPDFNLHRRQRTNSENKIR----TLSHSNSTHSA 152
Query: 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL 180
L++ H EF++ Y++ L EK+S+ EKI +R+ KER D++ E + + + TWA EP+L
Sbjct: 153 LKNRHLEFDKTKSYLTVLSEKLSSIEKISSRINKERIDFIVELNSYHPIFTTWATSEPEL 212
Query: 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240
+++++ + AV+ + +N+L++ + +P++D+L YID V+ + +R+ Q ++
Sbjct: 213 AALLQNIGCAVERNTAA-QNMLVQSYPTVIGNPIRDFLTYIDVVQDTIKKREAYQCAYEN 271
Query: 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS-EDRLEKLSTAIPKLT 299
EEL K+ +EK++L SS S +SLWK S +++LEKL IP+L
Sbjct: 272 SLEELNKRHSEKDKLI---------ASSHNPSQAAGFSLWKQPSCDEKLEKLGVYIPQLL 322
Query: 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQ 347
++E + L+ AN LRSD+E W+LEK+ LKKILL ++QI YYQ
Sbjct: 323 KKVEANQDSLECANESLRSDIEHWQLEKQQCLKKILLDFVNKQIEYYQ 370
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 357 | ||||||
| UNIPROTKB|F1ND98 | 385 | SNX30 "Uncharacterized protein | 0.694 | 0.644 | 0.366 | 2.3e-48 | |
| UNIPROTKB|E1BMD8 | 389 | SNX30 "Uncharacterized protein | 0.694 | 0.637 | 0.362 | 2.9e-48 | |
| UNIPROTKB|F1SNA5 | 393 | SNX30 "Uncharacterized protein | 0.694 | 0.631 | 0.358 | 6e-48 | |
| MGI|MGI:2443882 | 437 | Snx30 "sorting nexin family me | 0.694 | 0.567 | 0.362 | 7.7e-48 | |
| UNIPROTKB|F1Q3P2 | 351 | SNX30 "Uncharacterized protein | 0.649 | 0.660 | 0.378 | 1.2e-47 | |
| UNIPROTKB|F2Z4F6 | 451 | SNX7 "Uncharacterized protein" | 0.711 | 0.563 | 0.354 | 3.3e-47 | |
| UNIPROTKB|Q5VWJ9 | 437 | SNX30 "Sorting nexin-30" [Homo | 0.649 | 0.530 | 0.378 | 5.3e-47 | |
| RGD|1305480 | 387 | Snx7 "sorting nexin 7" [Rattus | 0.711 | 0.656 | 0.334 | 1.1e-44 | |
| UNIPROTKB|F1S551 | 387 | LOC100515025 "Uncharacterized | 0.711 | 0.656 | 0.342 | 1.1e-44 | |
| UNIPROTKB|E2RSU1 | 390 | SNX7 "Uncharacterized protein" | 0.711 | 0.651 | 0.338 | 7.6e-44 |
| UNIPROTKB|F1ND98 SNX30 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 434 (157.8 bits), Expect = 2.3e-48, Sum P(2) = 2.3e-48
Identities = 93/254 (36%), Positives = 147/254 (57%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 69 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 128
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + + +KK LL+KM ES +T Y L
Sbjct: 129 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNAYKKQGMALLSKMGESVKYVTGGY---KL 183
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF +Y+ K+ ++I R+ KE+ +Y+ E ++ + +TW G E +LS
Sbjct: 184 RSRPLEFAAIGEYLDTFSLKLGTIDRIAQRIIKEQLEYLVELREYGPIYSTWGGLEVELS 243
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + + + L E + +++Y++Y +++K VL +RD +QAE++
Sbjct: 244 EPLEGVSACIGNCCTALEELS-EDMTDDFLPVLREYILYSESMKNVLKKRDQVQAEYEAK 302
Query: 242 GEELQKKTAEKEQL 255
E + K ++ ++
Sbjct: 303 LEAVALKKEDRPKV 316
|
|
| UNIPROTKB|E1BMD8 SNX30 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 2.9e-48, Sum P(2) = 2.9e-48
Identities = 92/254 (36%), Positives = 147/254 (57%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 73 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 132
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + + HKK LL ++ ES ++ Y L
Sbjct: 133 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNAHKKQGMALLTRVGESVKHVAGGY---KL 187
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R+ EF +Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 188 RNRPLEFAAIGEYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 247
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 248 EPLEGVSACIGNCSTALEELT-DDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYETK 306
Query: 242 GEELQKKTAEKEQL 255
E + K E+ ++
Sbjct: 307 LEAVALKKEERPKV 320
|
|
| UNIPROTKB|F1SNA5 SNX30 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 429 (156.1 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 91/254 (35%), Positives = 149/254 (58%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 77 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 136
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + +++KK LL+++ ES ++T Y L
Sbjct: 137 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNVYKKQGMALLSRVGESVKHVTGGY---KL 191
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF +Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 192 RSRPLEFAAIGEYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 251
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 252 EPLEGVSACIGNCSTALEELT-DDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYEAK 310
Query: 242 GEELQKKTAEKEQL 255
E + + E+ ++
Sbjct: 311 LEAVALRKEERPKV 324
|
|
| MGI|MGI:2443882 Snx30 "sorting nexin family member 30" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 92/254 (36%), Positives = 148/254 (58%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 121 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 180
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + + +KK LL+++ ES ++T Y L
Sbjct: 181 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSRVGESVKHVTGGY---KL 235
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF S Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 236 RSRPLEFAAISDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 295
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 296 EPLEGVSACIGNCSTALEELT-DDITEEFLPVLREYVLYSDSMKGVLKKRDQVQAEYEAK 354
Query: 242 GEELQKKTAEKEQL 255
E + + E+ ++
Sbjct: 355 LEAVALRKEERPKV 368
|
|
| UNIPROTKB|F1Q3P2 SNX30 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 425 (154.7 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
Identities = 90/238 (37%), Positives = 139/238 (58%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 17 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 76
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H +FLTAK + + +KK LL ++ ES ++T Y L
Sbjct: 77 DKFLKRITDHPVLSFNEHFNVFLTAK--DLNAYKKQGMALLTRVGESVKHVTGGY---KL 131
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +LS
Sbjct: 132 RSRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELS 191
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHD 239
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 192 EPLEGVSACIGNCSTALEELT-DDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYE 248
|
|
| UNIPROTKB|F2Z4F6 SNX7 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 91/257 (35%), Positives = 142/257 (55%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 126 EFDSSEFEVRRRYQDFLWLKEKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 185
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N IFLTA+ +EFS HKK PGLL++M +S + + +
Sbjct: 186 HKFLNRIADHPTLTFNEDFKIFLTAQASEFSSHKKQGPGLLSRMGQSVRAVA--LSMRGV 243
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ EF + + +I +KI+ +KI R+YKE ++Y+ E ++ + W+ E L+
Sbjct: 244 KSRPEEFMEMNNFIEIFSQKINLIDKISQRIYKEEREYLDEMKEYGPIHILWSASEEDLA 303
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ V+ +D + + F E + +Y++Y + + V+ RRD IQAE D
Sbjct: 304 DTLKSVASCIDKCCKATEKRM-SGFSEALLPVVHEYVLYSEMLMAVMKRRDQIQAELDSK 362
Query: 242 GEELQKKTAEKEQLTNK 258
E L K A+ + LT +
Sbjct: 363 VEALTSKKADTDLLTEE 379
|
|
| UNIPROTKB|Q5VWJ9 SNX30 "Sorting nexin-30" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 420 (152.9 bits), Expect = 5.3e-47, Sum P(2) = 5.3e-47
Identities = 90/238 (37%), Positives = 139/238 (58%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL +KL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 121 EFDLPEYSVRRRYQDFDWLRSKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 180
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
D+FL+R+T HPVLS N H IFLTAK + + +KK LL +M ES ++T Y L
Sbjct: 181 DKFLKRITDHPVLSFNEHFNIFLTAK--DLNAYKKQGIALLTRMGESVKHVTGGY---KL 235
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
R EF Y+ K+ ++I R+ KE +Y+ E ++ V +TW+ E +L+
Sbjct: 236 RTRPLEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELA 295
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHD 239
+ VS + ++ + L + E +++Y++Y D++K VL +RD +QAE++
Sbjct: 296 EPLEGVSACIGNCSTALEELT-DDMTEDFLPVLREYILYSDSMKSVLKKRDQVQAEYE 352
|
|
| RGD|1305480 Snx7 "sorting nexin 7" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 397 (144.8 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 86/257 (33%), Positives = 139/257 (54%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N +FLTA+ E S +KK PGLL++M ++ + + + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKVFLTAEAWELSSYKKQGPGLLSRMGQTVRAVAS--SMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
++ EF + + +I +KI+ +KI R+YKE +DY E ++ + W+ E L
Sbjct: 180 KNRPDEFTEMNNFIETFSQKINLIDKISQRIYKEERDYFDEMKEYGPIHTLWSTSEEDLV 239
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ ++ +D + + E + +Y++Y + + V+ RRD IQAE D
Sbjct: 240 DTLKGIASCIDQCCKATEKRM-SGLSEALLPVVHEYVLYSEMLVGVMKRRDQIQAELDSK 298
Query: 242 GEELQKKTAEKEQLTNK 258
E L K A+ + LT +
Sbjct: 299 VEALTYKKADADLLTEE 315
|
|
| UNIPROTKB|F1S551 LOC100515025 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 88/257 (34%), Positives = 137/257 (53%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKEKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N +FLTA+ E S HKK PGLL++M ++ ++ + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKVFLTAQAWELSSHKKQGPGLLSRMGQTVRSVA--LSMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ EF + + +I KI+ +KI R+YKE +DY E ++ + W+ E L
Sbjct: 180 KSRPEEFMEMNNFIEIFSHKINLIDKISQRIYKEERDYFDEMKEYGPIHILWSASEEDLV 239
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ V+ +D + + E + +Y++Y + + V+ RRD IQAE D
Sbjct: 240 DPLKGVASCLDKCCKATEKRM-SGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELDSK 298
Query: 242 GEELQKKTAEKEQLTNK 258
E L K A+ + LT +
Sbjct: 299 VEALTSKKADTDLLTEE 315
|
|
| UNIPROTKB|E2RSU1 SNX7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 391 (142.7 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 87/257 (33%), Positives = 137/257 (53%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K L
Sbjct: 62 EFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKAL 121
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSL 121
+FL R+ HP L+ N +FLTA+ E S HKK PGLL++M ++ + + +
Sbjct: 122 HKFLNRIADHPTLTFNEDFKVFLTAQAWELSSHKKQGPGLLSRMGQTVRAVA--MSMRGV 179
Query: 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS 181
+ EF + + +I +KI+ +KI R+YKE ++Y E ++ + W+ E L
Sbjct: 180 KSRPEEFMEMNNFIEIFSQKINLIDKISQRIYKEEREYSDEMKEYGPIHVLWSASEEDLV 239
Query: 182 SVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
++ V+ +D + + E + +Y++Y + + V+ RRD IQAE D
Sbjct: 240 DTLKGVASCIDQCCKATEKRM-SGLSEALLPVVHEYVLYSEMLMGVMKRRDQIQAELDSK 298
Query: 242 GEELQKKTAEKEQLTNK 258
E L K A+ + LT +
Sbjct: 299 VEALTYKKADTDLLTEE 315
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8CE50 | SNX30_MOUSE | No assigned EC number | 0.3170 | 0.8347 | 0.6819 | yes | N/A |
| Q5VWJ9 | SNX30_HUMAN | No assigned EC number | 0.3256 | 0.8347 | 0.6819 | yes | N/A |
| Q28E02 | SNX30_XENTR | No assigned EC number | 0.3314 | 0.8347 | 0.6681 | yes | N/A |
| Q6CTQ0 | SNX4_KLULA | No assigned EC number | 0.2507 | 0.8991 | 0.8025 | yes | N/A |
| Q566W7 | SNX30_DANRE | No assigned EC number | 0.3083 | 0.8291 | 0.6883 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 357 | |||
| cd07624 | 200 | cd07624, BAR_SNX7_30, The Bin/Amphiphysin/Rvs (BAR | 5e-41 | |
| cd06860 | 116 | cd06860, PX_SNX7_30_like, The phosphoinositide bin | 9e-38 | |
| cd07667 | 240 | cd07667, BAR_SNX30, The Bin/Amphiphysin/Rvs (BAR) | 4e-32 | |
| cd07666 | 243 | cd07666, BAR_SNX7, The Bin/Amphiphysin/Rvs (BAR) d | 8e-30 | |
| cd07283 | 116 | cd07283, PX_SNX30, The phosphoinositide binding Ph | 9e-25 | |
| cd06863 | 118 | cd06863, PX_Atg24p, The phosphoinositide binding P | 3e-24 | |
| cd06859 | 114 | cd06859, PX_SNX1_2_like, The phosphoinositide bind | 1e-20 | |
| cd07284 | 116 | cd07284, PX_SNX7, The phosphoinositide binding Pho | 3e-20 | |
| cd07596 | 218 | cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) do | 5e-20 | |
| COG5391 | 524 | COG5391, COG5391, Phox homology (PX) domain protei | 8e-20 | |
| pfam00787 | 109 | pfam00787, PX, PX domain | 2e-15 | |
| cd06093 | 106 | cd06093, PX_domain, The Phox Homology domain, a ph | 3e-15 | |
| cd06864 | 129 | cd06864, PX_SNX4, The phosphoinositide binding Pho | 5e-15 | |
| cd06862 | 125 | cd06862, PX_SNX9_18_like, The phosphoinositide bin | 1e-14 | |
| cd06861 | 112 | cd06861, PX_Vps5p, The phosphoinositide binding Ph | 2e-14 | |
| smart00312 | 105 | smart00312, PX, PhoX homologous domain, present in | 1e-13 | |
| cd06867 | 112 | cd06867, PX_SNX41_42, The phosphoinositide binding | 5e-13 | |
| cd06865 | 120 | cd06865, PX_SNX_like, The phosphoinositide binding | 7e-13 | |
| cd06866 | 105 | cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide | 1e-12 | |
| cd06894 | 123 | cd06894, PX_SNX3_like, The phosphoinositide bindin | 2e-10 | |
| cd06898 | 113 | cd06898, PX_SNX10, The phosphoinositide binding Ph | 1e-09 | |
| cd07295 | 116 | cd07295, PX_Grd19, The phosphoinositide binding Ph | 2e-09 | |
| cd07294 | 132 | cd07294, PX_SNX12, The phosphoinositide binding Ph | 7e-08 | |
| cd07280 | 120 | cd07280, PX_YPT35, The phosphoinositide binding Ph | 9e-08 | |
| cd07293 | 123 | cd07293, PX_SNX3, The phosphoinositide binding Pho | 1e-07 | |
| cd07286 | 127 | cd07286, PX_SNX18, The phosphoinositide binding Ph | 2e-07 | |
| cd06897 | 108 | cd06897, PX_SNARE, The phosphoinositide binding Ph | 1e-06 | |
| cd07285 | 126 | cd07285, PX_SNX9, The phosphoinositide binding Pho | 2e-06 | |
| cd07282 | 124 | cd07282, PX_SNX2, The phosphoinositide binding Pho | 3e-06 | |
| cd06871 | 120 | cd06871, PX_MONaKA, The phosphoinositide binding P | 5e-06 | |
| cd07281 | 124 | cd07281, PX_SNX1, The phosphoinositide binding Pho | 1e-05 | |
| cd07291 | 141 | cd07291, PX_SNX5, The phosphoinositide binding Pho | 3e-05 | |
| cd06892 | 141 | cd06892, PX_SNX5_like, The phosphoinositide bindin | 8e-05 | |
| cd06873 | 120 | cd06873, PX_SNX13, The phosphoinositide binding Ph | 2e-04 | |
| cd07622 | 201 | cd07622, BAR_SNX4, The Bin/Amphiphysin/Rvs (BAR) d | 4e-04 | |
| cd06869 | 119 | cd06869, PX_UP2_fungi, The phosphoinositide bindin | 5e-04 | |
| cd06877 | 119 | cd06877, PX_SNX14, The phosphoinositide binding Ph | 5e-04 | |
| cd07276 | 110 | cd07276, PX_SNX16, The phosphoinositide binding Ph | 0.001 | |
| cd06868 | 120 | cd06868, PX_HS1BP3, The phosphoinositide binding P | 0.003 | |
| cd06893 | 132 | cd06893, PX_SNX19, The phosphoinositide binding Ph | 0.003 |
| >gnl|CDD|153308 cd07624, BAR_SNX7_30, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 5e-41
Identities = 75/237 (31%), Positives = 119/237 (50%), Gaps = 50/237 (21%)
Query: 114 NIYTTMS-LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT 172
+TM L++ EF++ ++Y++ EK+ E+I R++KER +Y E +++ +
Sbjct: 1 RNTSTMYLLKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQL 60
Query: 173 WAGYEPQLSSVIRQVSKAVDT-TASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARR 231
W+ E +L+ ++ VS AV+ TA+L L F P+++YL+Y DAVK VL RR
Sbjct: 61 WSASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLP--PLREYLLYSDAVKDVLKRR 118
Query: 232 DVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291
D Q E+++ EEL KK E
Sbjct: 119 DQFQIEYELSVEELNKKRLE---------------------------------------- 138
Query: 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
L ++E +KL+ AN L++DLERW+ K+ DLKKILL +A++QI YY+Q
Sbjct: 139 ------LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQ 189
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 200 |
| >gnl|CDD|132770 cd06860, PX_SNX7_30_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 9e-38
Identities = 50/87 (57%), Positives = 62/87 (71%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
EF +E VRRRY DF+WL KL E+ P+HIIPPLPEKHS+ L+R+S EF+ RM+
Sbjct: 30 SEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPEFVATRMRA 89
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAK 87
L +FL R+ HPVLS N H +FLTAK
Sbjct: 90 LHKFLNRIVEHPVLSFNEHLKVFLTAK 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of the sorting nexins in this subfamily has yet to be elucidated. Length = 116 |
| >gnl|CDD|153351 cd07667, BAR_SNX30, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 4e-32
Identities = 75/278 (26%), Positives = 134/278 (48%), Gaps = 49/278 (17%)
Query: 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQ 130
HPVLS N H +FLTAK + + +KK LL+KM ES +T Y LR EF
Sbjct: 1 HPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSKMGESVKYVTGGY---KLRSRPLEFAA 55
Query: 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKA 190
Y+ K+ ++I R+ KE +Y+ E ++ V +TW+G E +L+ + VS
Sbjct: 56 IGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSAC 115
Query: 191 VDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTA 250
+ ++ + L E E +++Y++Y +++K VL +RD +QAE++ E + +
Sbjct: 116 IGNCSTALEE-LTEDMTEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKE 174
Query: 251 EKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310
E+ PK+ + +E C ++++
Sbjct: 175 ER-------------------------------------------PKVPTDVEKCQDRVE 191
Query: 311 TANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
N L++D+ERW+ K+ D +++L+ +AD+ I YY++
Sbjct: 192 CFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEK 229
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 240 |
| >gnl|CDD|153350 cd07666, BAR_SNX7, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-30
Identities = 76/285 (26%), Positives = 136/285 (47%), Gaps = 60/285 (21%)
Query: 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQ 130
HP L+ N IFLTA+ E S HKK PGLL++M ++ + + + +++ EF +
Sbjct: 1 HPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVKAVAS--SVRGVKNRPEEFTE 58
Query: 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKA 190
++Y+ +KI+ +KI R+YKE+++Y E ++ + W+ E +L+ ++ ++
Sbjct: 59 MNEYVEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASC 118
Query: 191 VD----TTASLHKNL---LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGE 243
+D T K L L+ HE Y++Y + + V+ RRD IQAE D E
Sbjct: 119 IDRCCKATDKRMKGLSEQLLPVIHE--------YVLYSETLMGVIKRRDQIQAELDSKVE 170
Query: 244 ELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLE 303
L K A+++ L ++ +EKL
Sbjct: 171 ALANKKADRDLL-----------------------------KEEIEKL------------ 189
Query: 304 ICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
++K++ ANN L++D ERW+ + DL+ +A+ I+YY++
Sbjct: 190 --EDKVECANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEE 232
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 243 |
| >gnl|CDD|132816 cd07283, PX_SNX30, The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Score = 97.1 bits (241), Expect = 9e-25
Identities = 48/86 (55%), Positives = 61/86 (70%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF E VRRRY DF WL NKL E+ P+H+IPPLPEK + ++R+S+EF+ R K L
Sbjct: 31 EFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKAL 90
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAK 87
D+FL+R+ HPVLS N H +FLTAK
Sbjct: 91 DKFLKRIADHPVLSFNEHFNVFLTAK 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX30 has yet to be elucidated. Length = 116 |
| >gnl|CDD|132773 cd06863, PX_Atg24p, The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 3e-24
Identities = 41/87 (47%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL--NRYSKEFILCRM 58
P F E VRRRY+DFV+LH L P+ ++PPLP+KH LE++ +R+S EFI R
Sbjct: 31 PSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHR-LEYITGDRFSPEFITRRA 89
Query: 59 KLLDQFLRRVTSHPVLSVNSHAIIFLT 85
+ L +FLRR++ HPVLS + FL
Sbjct: 90 QSLQRFLRRISLHPVLSQSKILHQFLE 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Length = 118 |
| >gnl|CDD|132769 cd06859, PX_SNX1_2_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-20
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
P+F +E V RRY+DF+WL+ +LVE P I+PP PEK ++ + EFI R
Sbjct: 30 PDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV--GRFKVKFEFIEKRRAA 87
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTA 86
L++FLRR+ +HPVL + +FL +
Sbjct: 88 LERFLRRIAAHPVLRKDPDFRLFLES 113
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Length = 114 |
| >gnl|CDD|132817 cd07284, PX_SNX7, The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Score = 84.6 bits (209), Expect = 3e-20
Identities = 41/86 (47%), Positives = 55/86 (63%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
EF +E VRRRY DF+WL +L E P+ IIPPLPEK + + R++++FI R K L
Sbjct: 31 EFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKAL 90
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAK 87
+FL R+ HP L+ N IFLTA+
Sbjct: 91 HKFLNRIADHPTLTFNEDFKIFLTAQ 116
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, and SNX32. Both domains have been shown to determine the specific membrane-targeting of SNX1. The specific function of SNX7 has yet to be elucidated. Length = 116 |
| >gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 5e-20
Identities = 53/229 (23%), Positives = 95/229 (41%), Gaps = 27/229 (11%)
Query: 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ----LSS 182
EFE+ YI L E++ K RL K R++ S +F L A E + L
Sbjct: 5 EFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGE 64
Query: 183 VIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCG 242
+ ++ KA + +SL + + + P+K+YL Y AVK+ L R
Sbjct: 65 ALSKLGKAAEELSSLSEAQANQELVKLLE-PLKEYLRYCQAVKETLDDRADALLTLQSLK 123
Query: 243 EELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQL 302
++L K A+ E+L ++E+L + + S L
Sbjct: 124 KDLASKKAQLEKLKAA----------------------PGIKPAKVEELEEELEEAESAL 161
Query: 303 EICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351
E ++ + + L+ +L+R+ E+ DLK L + A Q+ Y ++ ++
Sbjct: 162 EEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAE 210
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 218 |
| >gnl|CDD|227680 COG5391, COG5391, Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 8e-20
Identities = 84/347 (24%), Positives = 142/347 (40%), Gaps = 20/347 (5%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL-NRYSKEFILCRMKLLDQFLRRV 68
VRRRY+DF LH+ L++ LP IPPLP K S E+ +R+S EFI R + L FLRRV
Sbjct: 175 VRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFLRRV 234
Query: 69 TSHPVLS--VNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHS 126
++HP+LS NS + + L+ F N+ S ++ +T
Sbjct: 235 STHPLLSNYKNSKSWESHSTLLSSFI---------ENRKSVPTPLSLDLTSTTQELDMER 285
Query: 127 EF--EQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVI 184
+ E S+ I N+ S FEKI +L E + +L + + +
Sbjct: 286 KELNESTSKAIHNILSIFSLFEKILIQLESEEESLTRLLESLNNLLLLVLNFSGVFAKRL 345
Query: 185 RQVSKAVDTTASLHK-NLLIEPFHEHN--SHPMKDYLMYIDAVKQVLARRDVIQAEHDMC 241
Q ++ + L +K I + D + +
Sbjct: 346 EQNQNSILNEGVVQAETLRSSLKELLTQLQDEIKSRESLILTDSNLEKLTDQNLEDVEEL 405
Query: 242 GEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQ 301
L+K ++++ TS + S + + + +E L KL Q
Sbjct: 406 SRSLRKNSSQR---AVVSQQPEGLTSFSKLSYKLRDFVQEKSRSKSIESLQQDKEKLEEQ 462
Query: 302 LEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
L I ++ Q N L+++L+ + + +DL+KIL +AD I + ++
Sbjct: 463 LAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEE 509
|
Length = 524 |
| >gnl|CDD|216119 pfam00787, PX, PX domain | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-15
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V+RRY+DF LH +L+ P IIPPLP K R+S+EFI R K L+++L+R+
Sbjct: 36 VKRRYSDFEELHKQLLRKFPGRIIPPLPPKK----LFGRFSEEFIEKRRKGLEEYLQRLL 91
Query: 70 SHPVLSVNSHAIIFLT 85
HP LS + + FL
Sbjct: 92 QHPELSNSEVVLEFLE 107
|
PX domains bind to phosphoinositides. Length = 109 |
| >gnl|CDD|132768 cd06093, PX_domain, The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-15
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RRY+DF LH KL + P I+PPLP K EFI R K L+Q+L+ +
Sbjct: 33 TVYRRYSDFEELHEKLKKKFPGVILPPLPPKKL----FGNLDPEFIEERRKQLEQYLQSL 88
Query: 69 TSHPVLSVNSHAIIFLT 85
+HP L + FL
Sbjct: 89 LNHPELRNSEELKEFLE 105
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. Length = 106 |
| >gnl|CDD|132774 cd06864, PX_SNX4, The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-15
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLN----RYSKEFILCRM 58
+ RRY++F L N LV T P I+PPLPEK ++ + +F+ R
Sbjct: 41 LSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFMWQKLSSDTFDPDFVERRR 100
Query: 59 KLLDQFLRRVTSHPVLSVNSHAIIFLT 85
L+ FL RV HP L + + FLT
Sbjct: 101 AGLENFLLRVAGHPELCQDKIFLEFLT 127
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and the long form of the leptin receptor. Length = 129 |
| >gnl|CDD|132772 cd06862, PX_SNX9_18_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 1e-14
Identities = 33/81 (40%), Positives = 44/81 (54%), Gaps = 10/81 (12%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V RRY F WL+ +LVE IPPLPEK + R+ ++FI R + L+ ++ R+
Sbjct: 34 VSRRYKHFDWLYERLVEKYSCIAIPPLPEK----QVTGRFEEDFIEKRRERLELWMNRLA 89
Query: 70 SHPVLS---VNSHAIIFLTAK 87
HPVLS V H FLT
Sbjct: 90 RHPVLSQSEVFRH---FLTCT 107
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 125 |
| >gnl|CDD|132771 cd06861, PX_Vps5p, The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-14
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 4/86 (4%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
P F + V RRY DF WL+ +L P I+PP PEK S + R+ F+ R
Sbjct: 30 PNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQS----VGRFDDNFVEQRRAA 85
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTA 86
L++ LR++ +HPVL + +FL +
Sbjct: 86 LEKMLRKIANHPVLQKDPDFRLFLES 111
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P). Similar to SNX1, Vps5p contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. Length = 112 |
| >gnl|CDD|214610 smart00312, PX, PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-13
Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Query: 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQ 63
E V RRY+DF+ LH+KL + P I+PPLP K LN +S+EFI R + L++
Sbjct: 24 GLEEWTVSRRYSDFLELHSKLKKHFPRSILPPLPGKKLFGR-LNNFSEEFIEKRRRGLEK 82
Query: 64 FLRRVTSHPVLSVNSHAII-FLT 85
+L+ + +HP L +S ++ FL
Sbjct: 83 YLQSLLNHPELINHSEVVLEFLE 105
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. Length = 105 |
| >gnl|CDD|132777 cd06867, PX_SNX41_42, The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-13
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSK-----EFILCRMKLLDQ 63
V+RRY++F L L P+ IIPP+PEKHSL ++ + SK + I R ++L +
Sbjct: 29 EVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKIIERRKRMLQR 88
Query: 64 FLRRVTSHPVLS 75
FL R HP+L
Sbjct: 89 FLNRCLQHPILR 100
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back to the late Golgi in yeast. Length = 112 |
| >gnl|CDD|132775 cd06865, PX_SNX_like, The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 7e-13
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
VRRR+ D V L ++L E +PP P+K ++E S EFI R L+++L R+
Sbjct: 44 VRRRFRDVVALADRLAEAYRGAFVPPRPDKS-VVESQVMQSAEFIEQRRVALEKYLNRLA 102
Query: 70 SHPVLSVNSHAI-IFLTA 86
+HPV+ S + +FLT
Sbjct: 103 AHPVIG-LSDELRVFLTL 119
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architecture as a subfamily of sorting nexins, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX-BAR structural unit is known to determine specific membrane localization. Length = 120 |
| >gnl|CDD|132776 cd06866, PX_SNX8_Mvp1p_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-12
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLR 66
+ V RRY+DFVWLH L++ P ++P LP K +EF+ R + L +FL
Sbjct: 29 KSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIGGSA----DREFLEARRRGLSRFLN 84
Query: 67 RVTSHPVLSVNSHAIIFLTA 86
V HPVLS + FLT
Sbjct: 85 LVARHPVLSEDELVRTFLTE 104
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. Length = 105 |
| >gnl|CDD|132804 cd06894, PX_SNX3_like, The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 33/93 (35%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL------NRYSKEFI 54
P F E VRRRY+DF WL ++L E ++PPLP K +L L + +EFI
Sbjct: 31 PVFKKKESSVRRRYSDFEWLRSEL-ERDSKIVVPPLPGK-ALKRQLPFRGDDGIFEEEFI 88
Query: 55 LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87
R K L+ F+ +V HP+ +FL +
Sbjct: 89 EERRKGLETFINKVAGHPLAQNEKCLHMFLQEE 121
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. Length = 123 |
| >gnl|CDD|132808 cd06898, PX_SNX10, The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 1e-09
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
VRRRY++FVWL N+L + +P LP K +L N ++ FI R + L FL +V
Sbjct: 39 VRRRYSEFVWLRNRLQKNALLIQLPSLPPK-NLFGRFN--NEGFIEERQQGLQDFLEKVL 95
Query: 70 SHPVLSVNSHAIIFL 84
P+L +S +FL
Sbjct: 96 QTPLLLSDSRLHLFL 110
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. Length = 113 |
| >gnl|CDD|132828 cd07295, PX_Grd19, The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-09
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
P F VRRRY+DF + + L P +IPPLP K NR+S E I R +
Sbjct: 31 PAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGK----IFTNRFSDEVIEERRQG 86
Query: 61 LDQFLRRVTSHPVLSVNS 78
L+ FL+ V HP+L S
Sbjct: 87 LETFLQSVAGHPLLQTGS 104
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. Length = 116 |
| >gnl|CDD|132827 cd07294, PX_SNX12, The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-08
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL------NRYSKEFI 54
P F E VRRRY+DF WL N+L E ++PPLP K +L L + + FI
Sbjct: 33 PIFKLKESCVRRRYSDFEWLKNEL-ERDSKIVVPPLPGK-ALKRQLPFRGDEGIFEESFI 90
Query: 55 LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPG 100
R + L+QF+ ++ HP L+ N + L + ++ + + PG
Sbjct: 91 EERRQGLEQFINKIAGHP-LAQNERCLHMF---LQDETIDRNYVPG 132
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. Length = 132 |
| >gnl|CDD|132813 cd07280, PX_YPT35, The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-08
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH---IIPPLPEKHSLLEHLNRYSKEFILCRMKLLD 62
+ + +RY++FV L L++ P H IP LP K + +K ++ R + L
Sbjct: 37 SSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNLNKAWLEKRRRGLQ 96
Query: 63 QFLRRVTSHPVLS 75
FL V +PV
Sbjct: 97 YFLNCVLLNPVFG 109
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. Length = 120 |
| >gnl|CDD|132826 cd07293, PX_SNX3, The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 1e-07
Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL------NRYSKEFI 54
P F E VRRRY+DF WL ++L E ++PPLP K +L L + FI
Sbjct: 31 PIFKLKESTVRRRYSDFEWLRSEL-ERESKVVVPPLPGK-ALFRQLPFRGDDGIFDDSFI 88
Query: 55 LCRMKLLDQFLRRVTSHPV 73
R + L+QFL +V HP+
Sbjct: 89 EERKQGLEQFLNKVAGHPL 107
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. SNX3 is required for the formation of multivesicular bodies, which function as transport intermediates to late endosomes. It also promotes cell surface expression of the amiloride-sensitive epithelial Na+ channel (ENaC), which is critical in sodium homeostasis and maintenance of extracellular fluid volume. Length = 123 |
| >gnl|CDD|132819 cd07286, PX_SNX18, The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Score = 49.3 bits (117), Expect = 2e-07
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFL 65
T V RRY F WL+ +L E P +P +PEK + R+ ++FI R K L ++
Sbjct: 30 TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQA----TGRFEEDFISKRRKGLIWWM 85
Query: 66 RRVTSHPVLS 75
+ SHPVL+
Sbjct: 86 DHMCSHPVLA 95
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. Length = 127 |
| >gnl|CDD|132807 cd06897, PX_SNARE, The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-06
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
P V RRY++FV LH +L + PLP K L + + + + R L
Sbjct: 23 RLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLSTSS--NPKLVEERRVGL 80
Query: 62 DQFLRRVTSHP 72
+ FLR + +
Sbjct: 81 EAFLRALLNDE 91
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. Length = 108 |
| >gnl|CDD|132818 cd07285, PX_SNX9, The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RY F WL+ +L+ I IP LP+K R+ +EFI RM+ L ++ R+
Sbjct: 34 VNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRM 89
Query: 69 TSHPVLS 75
HPV+S
Sbjct: 90 CRHPVIS 96
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. Through its SH3 domain, SNX9 binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis. Its array of interacting partners suggests that SNX9 functions at the interface between endocytosis and actin cytoskeletal organization. Length = 126 |
| >gnl|CDD|132815 cd07282, PX_SNX2, The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 3 FPDTECIVRRRYNDFVWLHNKLVETL--PSHIIPPLPEKHSL------LEHLNRYSKEFI 54
F +E VRRR++DF+ LH+KL +I+PP PEK + + + S EF+
Sbjct: 32 FSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFV 91
Query: 55 LCRMKLLDQFLRRVTSHPVL 74
R L+++L+R HP L
Sbjct: 92 EKRRAALERYLQRTVKHPTL 111
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. Similar to SNX1, SNX2 contains a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. The PX domain of SNX2 preferentially binds phosphatidylinositol-3-phosphate (PI3P), but not PI(3,4,5)P3. Studies on mice deficient with SNX1 and/or SNX2 suggest that they provide an essential function in embryogenesis and are functionally redundant. Length = 124 |
| >gnl|CDD|132781 cd06871, PX_MONaKA, The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 5e-06
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V RRYNDF L+ L S I PLP K L+ +++R EFI R + L +L +
Sbjct: 40 VIRRYNDFDLLNASL---QISGISLPLPPK-KLIGNMDR---EFIAERQQGLQNYLNVIL 92
Query: 70 SHPVLS 75
+P+L+
Sbjct: 93 MNPILA 98
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120 |
| >gnl|CDD|132814 cd07281, PX_SNX1, The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSL------LEHLNRYSKE 52
F V+RR++DF+ L+ KL E + I+PP PEK + + + S E
Sbjct: 30 LMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 89
Query: 53 FILCRMKLLDQFLRRVTSHPVL 74
F+ R L+++L+R+ SHP L
Sbjct: 90 FLERRRAALERYLQRIVSHPSL 111
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sorting by facilitating proper membrane localization of the cargo-recognition subcomplex. SNX1 contains a Bin/Amphiphysin/Rvs (BAR) domain C-terminal to the PX domain. The PX domain of SNX1 specifically binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,5)P2, while the BAR domain detects membrane curvature. Both domains help determine the specific membrane-targeting of SNX1, which is localized to a microdomain in early endosomes where it regulates cation-independent mannose-6-phosphate receptor retrieval to the trans Golgi network. Length = 124 |
| >gnl|CDD|132824 cd07291, PX_SNX5, The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-05
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 27/111 (24%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEK----------HSLLEHLNR 48
P F + V R++ DF+WLH+ L+ET IIPP P K L E
Sbjct: 28 PSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKLGEGEGS 87
Query: 49 YSK-EFILCRMKLLDQ--------------FLRRVTSHPVLSVNSHAIIFL 84
+K EF + +L + FL+R++SHP LS + + IFL
Sbjct: 88 MTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSHPSLSKDRNFHIFL 138
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It also binds the Fanconi anaemia complementation group A protein (FANCA). SNX5 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. The PX domain of SNX5 binds phosphatidylinositol-3-phosphate (PI3P) and PI(3,4)P2. SNX5 is localized to a subdomain of early endosome and is recruited to the plasma membrane following EGF stimulation and elevation of PI(3,4)P2 levels. Length = 141 |
| >gnl|CDD|132802 cd06892, PX_SNX5_like, The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 8e-05
Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 29/112 (25%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEK----------HSLLEHLNR 48
P F E V R++ +FVWLH+ LVE IIPP P K L E
Sbjct: 28 PTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGS 87
Query: 49 YSKEFILCRMK----------------LLDQFLRRVTSHPVLSVNSHAIIFL 84
+KE +MK + + FLRR+ SHPVL +++ +FL
Sbjct: 88 MTKEEFE-KMKQELEAEYLAIFKKTVAMHEVFLRRLASHPVLRNDANFRVFL 138
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of some SNXs. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. Length = 141 |
| >gnl|CDD|132783 cd06873, PX_SNX13, The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 2e-04
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 4/68 (5%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V RRY+DF LH +L E P+ P K + N + F+ R K+L+Q+L+ +
Sbjct: 43 VYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKT----FNNLDRAFLEKRRKMLNQYLQSLL 98
Query: 70 SHPVLSVN 77
+ VL N
Sbjct: 99 NPEVLDAN 106
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, through the RGS domain. It preferentially binds phosphatidylinositol-3-phosphate (PI3P) through the PX domain and is localized in early endosomes. SNX13 is involved in endosomal sorting of EGFR into multivesicular bodies (MVB) for delivery to the lysosome. Length = 120 |
| >gnl|CDD|153306 cd07622, BAR_SNX4, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 30/138 (21%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 118 TMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAH-QFAIVLNTWAGY 176
+ LR+ FE Y L ++ K+ RL ER V + H + V + W+
Sbjct: 6 SFRLRNPDKRFEDLKNYSDELQTNLNNLLKVRARL-AERLYGVYKIHANYGRVFSEWSAI 64
Query: 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQA 236
E ++ +++ +D+ A+ N L + E + +K+YL + D+++ V + +++Q
Sbjct: 65 EKEMGDGLQKAGHYMDSYAASIDNGLED--EELIADQLKEYLFFADSLRAVCKKHELLQY 122
Query: 237 EHDMCGEELQKKTAEKEQ 254
+ + + L K + E+
Sbjct: 123 DLEKAEDALANKKQQGEE 140
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. Length = 201 |
| >gnl|CDD|132779 cd06869, PX_UP2_fungi, The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT 69
V RRY+DF LH+ L + P +P LP K L R S L Q+LR +
Sbjct: 52 VARRYSDFKKLHHDLKKEFPGKKLPKLPHKDKLPREKLRLS----------LRQYLRSLL 101
Query: 70 SHP 72
P
Sbjct: 102 KDP 104
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. Length = 119 |
| >gnl|CDD|132787 cd06877, PX_SNX14, The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RRYN+F L +KL E PLP + S EF+ + ++ ++FL+++
Sbjct: 45 SVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRI----FGPKSYEFLESKREIFEEFLQKL 100
Query: 69 TSHPVLS 75
P L
Sbjct: 101 LQKPELR 107
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. Length = 119 |
| >gnl|CDD|132809 cd07276, PX_SNX16, The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.001
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V RRY DFV L++KL + P LP K + + +F+ R L F+ +
Sbjct: 36 FVFRRYTDFVRLNDKLKQMFP-GFRLSLPPKRWF---KDNFDPDFLEERQLGLQAFVNNI 91
Query: 69 TSHPVLS 75
+H ++
Sbjct: 92 MAHKDIA 98
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. Length = 110 |
| >gnl|CDD|132778 cd06868, PX_HS1BP3, The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
+V ++Y++F L+ KL E P I+PPLP K + S+ I R + F+R +
Sbjct: 48 MVSKKYSEFEELYKKLSEKYPGTILPPLPRKALFV------SESDIRERRAAFNDFMRFI 101
Query: 69 TSHPVLSVNSHAIIFLTAK 87
+ L+ + FL K
Sbjct: 102 SKDEKLANCPELLEFLGVK 120
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. Length = 120 |
| >gnl|CDD|132803 cd06893, PX_SNX19, The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Score = 37.1 bits (86), Expect = 0.003
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL----------PSHIIPPLPEKHSLLEHLNRYS 50
E P V RR+ +F+ L +L E P + LP
Sbjct: 44 SEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFDLP--------FGNMD 95
Query: 51 KEFILCRMKLLDQFLRRVTSHPVLS 75
K+ I R LL+ FLR++ S P +S
Sbjct: 96 KDKIEARRGLLETFLRQLCSIPEIS 120
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found in type-1 diabetes. It inhibits the conversion of phosphatidylinositol-4,5-bisphosphate [PI(4,5)P2] to PI(3,4,5)P3, which leads in the decrease of protein phosphorylation in the Akt signaling pathway, resulting in apoptosis. SNX19 may also be implicated in coronary heart disease and thyroid oncocytic tumors. Length = 132 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| KOG2273|consensus | 503 | 100.0 | ||
| cd07666 | 243 | BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| cd07667 | 240 | BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07664 | 234 | BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| cd07665 | 234 | BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of S | 100.0 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 100.0 | |
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07623 | 224 | BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of | 100.0 | |
| cd07624 | 200 | BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain o | 100.0 | |
| KOG1660|consensus | 399 | 100.0 | ||
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 99.97 | |
| cd07662 | 218 | BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.97 | |
| cd07621 | 219 | BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.97 | |
| cd07663 | 218 | BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.97 | |
| cd07622 | 201 | BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.97 | |
| cd07625 | 230 | BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.96 | |
| cd07628 | 185 | BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.96 | |
| cd07630 | 198 | BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.96 | |
| COG5391 | 524 | Phox homology (PX) domain protein [Intracellular t | 99.95 | |
| cd07284 | 116 | PX_SNX7 The phosphoinositide binding Phox Homology | 99.95 | |
| cd07283 | 116 | PX_SNX30 The phosphoinositide binding Phox Homolog | 99.95 | |
| KOG2528|consensus | 490 | 99.94 | ||
| cd07286 | 127 | PX_SNX18 The phosphoinositide binding Phox Homolog | 99.94 | |
| cd06891 | 140 | PX_Vps17p The phosphoinositide binding Phox Homolo | 99.94 | |
| cd06860 | 116 | PX_SNX7_30_like The phosphoinositide binding Phox | 99.94 | |
| cd07629 | 187 | BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of | 99.93 | |
| cd07291 | 141 | PX_SNX5 The phosphoinositide binding Phox Homology | 99.93 | |
| cd07292 | 141 | PX_SNX6 The phosphoinositide binding Phox Homology | 99.93 | |
| cd07285 | 126 | PX_SNX9 The phosphoinositide binding Phox Homology | 99.93 | |
| cd07282 | 124 | PX_SNX2 The phosphoinositide binding Phox Homology | 99.92 | |
| cd07293 | 123 | PX_SNX3 The phosphoinositide binding Phox Homology | 99.92 | |
| cd06861 | 112 | PX_Vps5p The phosphoinositide binding Phox Homolog | 99.92 | |
| cd06892 | 141 | PX_SNX5_like The phosphoinositide binding Phox Hom | 99.92 | |
| cd07294 | 132 | PX_SNX12 The phosphoinositide binding Phox Homolog | 99.91 | |
| cd07295 | 116 | PX_Grd19 The phosphoinositide binding Phox Homolog | 99.91 | |
| cd06894 | 123 | PX_SNX3_like The phosphoinositide binding Phox Hom | 99.91 | |
| cd06865 | 120 | PX_SNX_like The phosphoinositide binding Phox Homo | 99.91 | |
| cd06863 | 118 | PX_Atg24p The phosphoinositide binding Phox Homolo | 99.91 | |
| cd06864 | 129 | PX_SNX4 The phosphoinositide binding Phox Homology | 99.9 | |
| cd07281 | 124 | PX_SNX1 The phosphoinositide binding Phox Homology | 99.89 | |
| cd06898 | 113 | PX_SNX10 The phosphoinositide binding Phox Homolog | 99.89 | |
| cd06866 | 105 | PX_SNX8_Mvp1p_like The phosphoinositide binding Ph | 99.88 | |
| cd07598 | 211 | BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.88 | |
| cd07288 | 118 | PX_SNX15 The phosphoinositide binding Phox Homolog | 99.88 | |
| cd06867 | 112 | PX_SNX41_42 The phosphoinositide binding Phox Homo | 99.88 | |
| cd06862 | 125 | PX_SNX9_18_like The phosphoinositide binding Phox | 99.88 | |
| cd06868 | 120 | PX_HS1BP3 The phosphoinositide binding Phox Homolo | 99.88 | |
| cd06859 | 114 | PX_SNX1_2_like The phosphoinositide binding Phox H | 99.86 | |
| cd06877 | 119 | PX_SNX14 The phosphoinositide binding Phox Homolog | 99.86 | |
| cd07287 | 118 | PX_RPK118_like The phosphoinositide binding Phox H | 99.86 | |
| cd07300 | 114 | PX_SNX20 The phosphoinositide binding Phox Homolog | 99.86 | |
| cd06879 | 138 | PX_UP1_plant The phosphoinositide binding Phox Hom | 99.85 | |
| cd07280 | 120 | PX_YPT35 The phosphoinositide binding Phox Homolog | 99.85 | |
| cd07279 | 112 | PX_SNX20_21_like The phosphoinositide binding Phox | 99.85 | |
| cd07301 | 112 | PX_SNX21 The phosphoinositide binding Phox Homolog | 99.85 | |
| cd06881 | 117 | PX_SNX15_like The phosphoinositide binding Phox Ho | 99.84 | |
| KOG2527|consensus | 144 | 99.83 | ||
| cd07276 | 110 | PX_SNX16 The phosphoinositide binding Phox Homolog | 99.82 | |
| cd07597 | 246 | BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.81 | |
| cd06893 | 132 | PX_SNX19 The phosphoinositide binding Phox Homolog | 99.81 | |
| cd06870 | 109 | PX_CISK The phosphoinositide binding Phox Homology | 99.81 | |
| cd06886 | 106 | PX_SNX27 The phosphoinositide binding Phox Homolog | 99.81 | |
| cd06897 | 108 | PX_SNARE The phosphoinositide binding Phox Homolog | 99.8 | |
| cd06871 | 120 | PX_MONaKA The phosphoinositide binding Phox Homolo | 99.78 | |
| cd06869 | 119 | PX_UP2_fungi The phosphoinositide binding Phox Hom | 99.77 | |
| cd06872 | 107 | PX_SNX19_like_plant The phosphoinositide binding P | 99.77 | |
| cd06873 | 120 | PX_SNX13 The phosphoinositide binding Phox Homolog | 99.76 | |
| cd06885 | 104 | PX_SNX17_31 The phosphoinositide binding Phox Homo | 99.76 | |
| cd06876 | 133 | PX_MDM1p The phosphoinositide binding Phox Homolog | 99.75 | |
| cd06875 | 116 | PX_IRAS The phosphoinositide binding Phox Homology | 99.75 | |
| cd06878 | 127 | PX_SNX25 The phosphoinositide binding Phox Homolog | 99.74 | |
| cd07626 | 199 | BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain | 99.73 | |
| smart00312 | 105 | PX PhoX homologous domain, present in p47phox and | 99.72 | |
| cd06882 | 123 | PX_p40phox The phosphoinositide binding Phox Homol | 99.72 | |
| cd07277 | 118 | PX_RUN The phosphoinositide binding Phox Homology | 99.68 | |
| cd06880 | 110 | PX_SNX22 The phosphoinositide binding Phox Homolog | 99.68 | |
| cd06093 | 106 | PX_domain The Phox Homology domain, a phosphoinosi | 99.66 | |
| cd06883 | 109 | PX_PI3K_C2 The phosphoinositide binding Phox Homol | 99.66 | |
| PF00787 | 113 | PX: PX domain; InterPro: IPR001683 The PX (phox) d | 99.63 | |
| cd06884 | 111 | PX_PI3K_C2_68D The phosphoinositide binding Phox H | 99.55 | |
| cd06890 | 112 | PX_Bem1p The phosphoinositide binding Phox Homolog | 99.53 | |
| cd06874 | 127 | PX_KIF16B_SNX23 The phosphoinositide binding Phox | 99.52 | |
| PF10456 | 237 | BAR_3_WASP_bdg: WASP-binding domain of Sorting nex | 99.52 | |
| cd06895 | 140 | PX_PLD The phosphoinositide binding Phox Homology | 99.49 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 99.47 | |
| cd06887 | 118 | PX_p47phox The phosphoinositide binding Phox Homol | 99.46 | |
| cd07670 | 207 | BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.46 | |
| cd07669 | 207 | BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of | 99.45 | |
| cd07668 | 210 | BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of S | 99.44 | |
| cd06888 | 119 | PX_FISH The phosphoinositide binding Phox Homology | 99.41 | |
| cd07590 | 225 | BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of B | 99.4 | |
| cd07290 | 109 | PX_PI3K_C2_beta The phosphoinositide binding Phox | 99.38 | |
| cd07588 | 211 | BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) doma | 99.37 | |
| cd07611 | 211 | BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) | 99.32 | |
| PF06730 | 219 | FAM92: FAM92 protein; InterPro: IPR009602 This fam | 99.32 | |
| PF03114 | 229 | BAR: BAR domain; InterPro: IPR004148 Endocytosis a | 99.31 | |
| cd07591 | 224 | BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain o | 99.26 | |
| cd07289 | 109 | PX_PI3K_C2_alpha The phosphoinositide binding Phox | 99.26 | |
| cd07612 | 211 | BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of B | 99.22 | |
| cd07599 | 216 | BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain o | 99.19 | |
| cd07296 | 135 | PX_PLD1 The phosphoinositide binding Phox Homology | 99.15 | |
| smart00721 | 239 | BAR BAR domain. | 99.14 | |
| cd07589 | 195 | BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of | 99.08 | |
| cd06889 | 121 | PX_NoxO1 The phosphoinositide binding Phox Homolog | 98.98 | |
| KOG3771|consensus | 460 | 98.88 | ||
| cd06896 | 101 | PX_PI3K_C2_gamma The phosphoinositide binding Phox | 98.77 | |
| cd07603 | 200 | BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 98.64 | |
| cd07593 | 215 | BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) dom | 98.64 | |
| cd07604 | 215 | BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of | 98.58 | |
| cd07601 | 215 | BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of A | 98.52 | |
| cd07602 | 207 | BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR | 98.5 | |
| cd07606 | 202 | BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain | 98.5 | |
| cd07637 | 200 | BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.47 | |
| cd07595 | 244 | BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) | 98.46 | |
| cd07638 | 200 | BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.45 | |
| cd07639 | 200 | BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.43 | |
| cd07297 | 130 | PX_PLD2 The phosphoinositide binding Phox Homology | 98.42 | |
| cd07594 | 229 | BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) dom | 98.35 | |
| cd07619 | 248 | BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.32 | |
| KOG1259|consensus | 490 | 98.31 | ||
| cd07620 | 257 | BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.29 | |
| KOG3784|consensus | 407 | 98.28 | ||
| cd07615 | 223 | BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) do | 98.23 | |
| cd07618 | 246 | BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.21 | |
| cd07592 | 223 | BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) dom | 98.14 | |
| PF06456 | 229 | Arfaptin: Arfaptin-like domain; InterPro: IPR01050 | 98.14 | |
| cd07660 | 201 | BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain | 98.13 | |
| cd07614 | 223 | BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) do | 98.12 | |
| cd07635 | 207 | BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.09 | |
| cd07636 | 207 | BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of G | 98.06 | |
| cd07613 | 223 | BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) do | 98.05 | |
| cd07642 | 215 | BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of | 98.04 | |
| cd00011 | 203 | BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) do | 98.0 | |
| PF08397 | 219 | IMD: IRSp53/MIM homology domain; InterPro: IPR0136 | 97.99 | |
| cd07600 | 242 | BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.96 | |
| cd07616 | 229 | BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) do | 97.94 | |
| cd07641 | 215 | BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.92 | |
| cd07634 | 207 | BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domai | 97.88 | |
| cd07617 | 220 | BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) do | 97.73 | |
| cd07605 | 223 | I-BAR_IMD Inverse (I)-BAR, also known as the IRSp5 | 97.61 | |
| PF13805 | 271 | Pil1: Eisosome component PIL1; PDB: 3PLT_B. | 97.44 | |
| cd07645 | 226 | I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as | 97.37 | |
| cd07632 | 215 | BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.34 | |
| cd07653 | 251 | F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and B | 97.28 | |
| KOG2101|consensus | 362 | 97.27 | ||
| cd07646 | 232 | I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as th | 97.26 | |
| cd07633 | 207 | BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.25 | |
| cd07649 | 233 | F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Am | 97.22 | |
| cd07659 | 215 | BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.05 | |
| cd07655 | 258 | F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ | 97.03 | |
| cd07631 | 215 | BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of | 97.0 | |
| cd07640 | 213 | BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of | 96.96 | |
| KOG1118|consensus | 366 | 96.89 | ||
| cd07658 | 239 | F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin | 96.8 | |
| cd07298 | 115 | PX_RICS The phosphoinositide binding Phox Homology | 96.78 | |
| PF10455 | 289 | BAR_2: Bin/amphiphysin/Rvs domain for vesicular tr | 96.51 | |
| KOG4773|consensus | 386 | 96.43 | ||
| cd07651 | 236 | F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology | 96.33 | |
| cd07648 | 261 | F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Am | 96.19 | |
| KOG3876|consensus | 341 | 96.1 | ||
| KOG0521|consensus | 785 | 95.64 | ||
| cd07674 | 261 | F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/A | 95.39 | |
| KOG3651|consensus | 429 | 95.31 | ||
| cd07661 | 204 | BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of | 95.31 | |
| PF09325 | 236 | Vps5: Vps5 C terminal like; InterPro: IPR015404 Vp | 95.29 | |
| cd07596 | 218 | BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of So | 95.14 | |
| cd07299 | 113 | PX_TCGAP The phosphoinositide binding Phox Homolog | 95.11 | |
| KOG0905|consensus | 1639 | 95.07 | ||
| cd07676 | 253 | F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/A | 94.94 | |
| cd07650 | 228 | F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and | 94.86 | |
| cd07680 | 258 | F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin | 94.85 | |
| cd07681 | 258 | F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin | 94.8 | |
| cd07643 | 231 | I-BAR_IMD_MIM Inverse (I)-BAR, also known as the I | 94.73 | |
| cd07278 | 114 | PX_RICS_like The phosphoinositide binding Phox Hom | 94.69 | |
| cd07672 | 240 | F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin | 94.4 | |
| cd07679 | 258 | F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin | 94.38 | |
| cd07673 | 269 | F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/A | 94.2 | |
| KOG3725|consensus | 375 | 93.0 | ||
| cd07686 | 234 | F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amp | 92.84 | |
| cd07647 | 239 | F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/ | 92.18 | |
| PF11559 | 151 | ADIP: Afadin- and alpha -actinin-Binding; InterPro | 91.94 | |
| COG5391 | 524 | Phox homology (PX) domain protein [Intracellular t | 91.62 | |
| cd07657 | 237 | F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin | 91.11 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.9 | |
| KOG1451|consensus | 812 | 90.69 | ||
| cd07651 | 236 | F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology | 90.46 | |
| PF12128 | 1201 | DUF3584: Protein of unknown function (DUF3584); In | 90.11 | |
| cd07671 | 242 | F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin | 89.81 | |
| KOG2273|consensus | 503 | 88.88 | ||
| PRK11546 | 143 | zraP zinc resistance protein; Provisional | 88.03 | |
| cd07610 | 191 | FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or | 86.28 | |
| cd07307 | 194 | BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimeri | 85.98 | |
| PF04048 | 142 | Sec8_exocyst: Sec8 exocyst complex component speci | 85.75 | |
| cd07598 | 211 | BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of | 85.71 | |
| cd07655 | 258 | F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/ | 85.47 | |
| KOG4460|consensus | 741 | 81.73 | ||
| cd07627 | 216 | BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of | 81.71 | |
| PF15642 | 385 | Tox-ODYAM1: Toxin in Odyssella and Amoebophilus | 80.87 |
| >KOG2273|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=326.64 Aligned_cols=338 Identities=27% Similarity=0.449 Sum_probs=278.7
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch-hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE-HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~-~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|....+.|+|||+||.|||+.|...|||++|||+|+|....+ .++.++++|+++||++|++||++|+.||+|++++.
T Consensus 140 ~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP~k~~~~~~~~~~~s~ef~e~rr~~L~~~l~r~~~hP~l~~~~~ 219 (503)
T KOG2273|consen 140 PIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLPEKSIVGSKSGDSFSDEFIEKRRKALERFLNRLSLHPVLSNDED 219 (503)
T ss_pred CcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCCchhhhhccccCCCCHHHHHHHHHHHHHHHHHHhcCcccccCHH
Confidence 67888899999999999999999999999999999999999855 44678999999999999999999999999999999
Q ss_pred hhccccccc----cchhhcccCCCCc-----cccch-hhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 80 AIIFLTAKL----AEFSMHKKHSPGL-----LNKMS-ESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG 149 (357)
Q Consensus 80 ~~~FL~~~~----~~~~~~~k~~~~~-----~~~~~-~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~ 149 (357)
|..||+.+. ++...+.+++.+. ++... .....+...+.. +.+.+++|.+..+++++++..+..+.+.+
T Consensus 220 ~~~FL~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~f~e~~~~i~~l~~~l~~l~~~~ 297 (503)
T KOG2273|consen 220 FRLFLESDSKELPTDVNSRFKSGADLLSKQFFGETSSTDAVSLLPSFKK--FKESDKEFTEKKEKIDKLEQQLKKLSKQV 297 (503)
T ss_pred HHHHhcccccccchhhHHHHhcchhhccccccCcccchhhhhccccccc--cccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999994 2333334443332 22222 111111112222 67789999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhCCch---hHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhcchhHHHHHHHHHHHH
Q psy18202 150 TRLYKERKDYVSEAHQFAIVLNTWAGYEP---QLSSVIRQVSKAVDTTASLHKNLL-IEPFHEHNSHPMKDYLMYIDAVK 225 (357)
Q Consensus 150 ~~l~k~~~~l~~~~~~~~~~~~~l~~~E~---~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~a~k 225 (357)
.+++..+..++..+.++|.++..|+.++. .++..+..++.+...++...++ . .......+.+.+++|++++++++
T Consensus 298 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~e~-~~~~~~~~~~~~~l~~~i~~~~~~k 376 (503)
T KOG2273|consen 298 QRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIESLSKLLEK-LTAEKDSKKLAEQLREYIRYLESVK 376 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 6889999999999999988877 5 55556799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc-c--HHHHHHHHhhHhHHHHHH
Q psy18202 226 QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST-S--EDRLEKLSTAIPKLTSQL 302 (357)
Q Consensus 226 ~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~--~~ki~~l~~~i~~le~~~ 302 (357)
.++..|..++..++.++..+.+++....++...+. .+++... + ..++.+++.++..+++.+
T Consensus 377 ~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~~~----------------~~~~~~k~~~~~~e~~~~~~~~~~~~~~~ 440 (503)
T KOG2273|consen 377 SLFEQRSKALQKLQEAQRELSSKKEQLSKLKKKNR----------------SSFGFDKIDLAEKEIEKLEEKVNELEELL 440 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhh----------------hhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988886620 0000000 1 155555566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 303 EICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 303 ~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
...+..+..|++.+..|+.+|...+..||+.++..|++.+++++++++++|...+
T Consensus 441 ~~~~~~~~~i~~~~~~e~~~f~~~~~~d~~~~~~~~~d~~i~~~~~~l~~W~~~~ 495 (503)
T KOG2273|consen 441 ALKELELDEISERIRAELERFEESRRQDFKESLKKYADLHVEYAEQILKAWEKFL 495 (503)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6555566699999999999999999999999999999999999999999998653
|
|
| >cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=277.77 Aligned_cols=240 Identities=30% Similarity=0.557 Sum_probs=216.3
Q ss_pred CccccCChhhhccccccccchhhcccCCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGT 150 (357)
Q Consensus 71 hp~L~~~~~~~~FL~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~ 150 (357)
||+|+.++.|+.||++++|+...++++++|+++++++++.++.++|.+ ++.+|++|.++++|+++++.+|..+.+++.
T Consensus 1 HPvLs~~~~~~~FL~s~~W~~~~~~~~~~g~~~~~~d~~~~~~s~~~~--v~~~~~eF~Emkey~d~L~~~L~~ieki~~ 78 (243)
T cd07666 1 HPTLTFNEDFKIFLTAQAWELSSHKKQGPGLLSRMGQTVKAVASSVRG--VKNRPEEFTEMNEYVEAFSQKINVLDKISQ 78 (243)
T ss_pred CCccccChHHHHHHcCchHHHHHHHhcchhhhhhhHHHHHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 999999999999999999988888999999999999999999998876 799999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy18202 151 RLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLAR 230 (357)
Q Consensus 151 ~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~ 230 (357)
||+++..++...+.+||.++..||++|++|..+|..+|.+++.++..+.. +...+...|.++|++|++|+.++|.+|+.
T Consensus 79 Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~-~~~~l~~~f~~~Lkeyv~y~~slK~vlk~ 157 (243)
T cd07666 79 RIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDK-RMKGLSEQLLPVIHEYVLYSETLMGVIKR 157 (243)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777 55556679999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
|+.++.+++...+++.++++++ +.++.+|.+++.+++
T Consensus 158 R~~~Q~~le~k~e~l~k~~~dr------------------------------------~~~~~ev~~~e~kve------- 194 (243)
T cd07666 158 RDQIQAELDSKVEALANKKADR------------------------------------DLLKEEIEKLEDKVE------- 194 (243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhH------------------------------------HHHHHHHHHHHHHHH-------
Confidence 9999998888888877754433 244455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 311 TANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 311 ~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..++.++.|++||+.+|..||+.+|.+|++.+|.+|++++..|+.+
T Consensus 195 ~a~~~~k~e~~Rf~~~k~~D~k~~~~~yae~~i~~~~~~~~~We~f 240 (243)
T cd07666 195 CANNALKADWERWKQNMQTDLRSAFTDMAENNISYYEECLATWESF 240 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477799999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=262.38 Aligned_cols=237 Identities=31% Similarity=0.544 Sum_probs=216.1
Q ss_pred CccccCChhhhccccccccchhhcccCCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 71 HPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGT 150 (357)
Q Consensus 71 hp~L~~~~~~~~FL~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~ 150 (357)
||+|+.++.|+.||+++ +|..++++++|..++++++...+++.+. ++.+|++|.++++|+++++..|..+.++..
T Consensus 1 HPvLs~~~~f~~FLts~--dw~a~~kq~~~~~~~~~~~~~~lna~~k---v~~~d~eF~e~~ey~d~l~~~l~~ieki~~ 75 (240)
T cd07667 1 HPVLSFNEHFNVFLTAK--DLNAYKKQGIALLSKMGESVKYVTGGYK---LRSRPLEFAAIGDYLDTFALKLGTIDRIAQ 75 (240)
T ss_pred CCccccChHHHHHHcch--hHHHHhhcccccccccchHHHHHHHHhc---cCCCChHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999 5688899998888888888877777664 899999999999999999999999999999
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHH
Q psy18202 151 RLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLAR 230 (357)
Q Consensus 151 ~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~ 230 (357)
|++++..++..++.++|.+|..|+.+|+.|..+|..++.+++.++..+.+ +.+..+..|.++|++|..|+.++|.+|+.
T Consensus 76 Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~-l~~~~~~~yl~~Lke~~~Y~~slk~vlK~ 154 (240)
T cd07667 76 RIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEE-LTEDMTEDFLPVLREYILYSESMKNVLKK 154 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 87777779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~ 310 (357)
|++++.+|+.+.+++.-+ ++++++|+.+|++++++ ++
T Consensus 155 RdqkQ~d~E~l~E~l~~r------------------------------------re~~~kLe~~ie~~~~~-------ve 191 (240)
T cd07667 155 RDQVQAEYEAKLEAVALR------------------------------------KEERPKVPTDVEKCQDR-------VE 191 (240)
T ss_pred HHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHHHHHHHHHHH-------HH
Confidence 999999999998887321 35666666666555554 48
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 311 TANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 311 ~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
.|++.++.|+.+|+..|..||+..|.+||+.||+||++++++|+-+
T Consensus 192 ~f~~~~~~E~~~Fe~~K~~e~k~~l~~~Ad~~i~fy~~~~~~We~~ 237 (240)
T cd07667 192 CFNADLKADMERWQNNKRQDFRQLLMGMADKNIQYYEKCLTAWESI 237 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=247.31 Aligned_cols=226 Identities=19% Similarity=0.260 Sum_probs=210.8
Q ss_pred ccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-
Q psy18202 101 LLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ- 179 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~- 179 (357)
+++++++++.+++.. +.|+|+||.+.+.|++.|+.+|+.+.+.++.|+++|++|+.++.+||.++..||.+|.+
T Consensus 2 ~~~~~~~~~~~~~~k-----~~E~D~~F~~~k~yi~~Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~ 76 (234)
T cd07664 2 MVNKAADAVNKMTIK-----MNESDAWFEEKQQQFENLDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHT 76 (234)
T ss_pred hhhHHHHHHHhcccc-----ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 456777777776544 78999999999999999999999999999999999999999999999999999999864
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|..+|++.++++.++.+ .+.....+|+++|++|++.++|+|.+|.+|.+++..|++++.+|.++++.+.||..+
T Consensus 77 ~ls~~l~~laev~~ki~~~~~~-qa~~d~~~l~e~L~eYiR~i~svK~~f~~R~k~~~~~~~a~~~L~kkr~~~~Kl~~~ 155 (234)
T cd07664 77 ALSRALSQLAEVEEKIDQLHQD-QAFADFYLFSELLGDYIRLIAAVKGVFDQRMKCWQKWQDAQVTLQKKREAEAKLQYA 155 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999888 776777899999999999999999999999999999999999999999999999654
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ .++|++.++.+|.+++.++..++.+|+.|++.++.|+.||+.+|..||+.+|..|
T Consensus 156 --~----------------------k~dK~~~~~~ev~~~e~~~~~a~~~fe~Is~~~k~El~rFe~er~~dfk~~l~~f 211 (234)
T cd07664 156 --N----------------------KPDKLQQAKDEIKEWEAKVQQGERDFEQISKTIRKEVGRFEKERVKDFKTVIIKY 211 (234)
T ss_pred --C----------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q psy18202 339 ADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~~~ 356 (357)
++.+|++.+++++.|+.+
T Consensus 212 les~ie~qke~ie~We~f 229 (234)
T cd07664 212 LESLVQTQQQLIKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=245.01 Aligned_cols=226 Identities=18% Similarity=0.236 Sum_probs=210.9
Q ss_pred ccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-
Q psy18202 101 LLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ- 179 (357)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~- 179 (357)
+++++++++..++.. +.|+|+||.+.+.|++.|+.+|+++.+.+..|+++|++|+..+.+||.++..||.+|.+
T Consensus 2 ~~~~~~d~~~~~~~k-----~~E~D~wF~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~ 76 (234)
T cd07665 2 MFNKATDAVSKMTIK-----MNESDVWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNT 76 (234)
T ss_pred hhhHHHHHHhccccC-----cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 356777777776544 78999999999999999999999999999999999999999999999999999999965
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|..+|++.++++..++. .+.....+|+++|++|++.++|||.+|..|.+++..|++++.+|.+|+..+.+|..+
T Consensus 77 ~Ls~als~laev~~~i~~~~~~-qa~qd~~~f~e~l~eYiRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~ 155 (234)
T cd07665 77 ALSRALSQLAEVEEKIEQLHQE-QANNDFFLLAELLADYIRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWA 155 (234)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888 776777899999999999999999999999999999999999999999999999643
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ .++|+..++.+|.+++.+++.++.+|+.|++.|+.|+.||+.+|..||+.++..|
T Consensus 156 --~----------------------~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er~~Dfk~~v~~f 211 (234)
T cd07665 156 --N----------------------KPDKLQQAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEKSKDFKNHIIKY 211 (234)
T ss_pred --C----------------------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1489999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccc
Q psy18202 339 ADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~~~ 356 (357)
++.+|+..+++++.|+.+
T Consensus 212 les~ie~qke~ie~We~f 229 (234)
T cd07665 212 LETLLHSQQQLVKYWEAF 229 (234)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999875
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization |
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=251.21 Aligned_cols=229 Identities=27% Similarity=0.423 Sum_probs=210.7
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
|+++++..++.+... + ++++|++|.+.++|++.|+.+|+.+.+.+.+|++++++++.++.+||.+|..||.+|.+
T Consensus 3 ~~~~~~~~s~~~~~~---~--~~e~D~~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~ 77 (236)
T PF09325_consen 3 GLFGKLFDSVSNSSP---K--MKEPDEWFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE 77 (236)
T ss_pred hHHHHHHHHHHccCC---C--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 455566665555422 2 88999999999999999999999999999999999999999999999999999999977
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 180 --LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 180 --l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
++.++..+|++++.++.++.. ++......|+++|++|++|+.++|++|.+|..++.+|+++..+|++++++++++..
T Consensus 78 ~~l~~~l~~l~~~~~~~~~~~~~-~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~ 156 (236)
T PF09325_consen 78 KSLSEALSQLAEAFEKISELLEE-QANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKLKA 156 (236)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999887 77777789999999999999999999999999999999999999999999999886
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.. + ..++|++.++.+|.+++..++.++.+++.|++.++.|+.||+..|..||+.+|..
T Consensus 157 ~~--~--------------------~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k~~d~k~~l~~ 214 (236)
T PF09325_consen 157 SG--K--------------------NRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEKVKDFKSMLEE 214 (236)
T ss_pred cc--h--------------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 51 0 1259999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc
Q psy18202 338 IADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~~~ 356 (357)
|++.||.++++++++|+.+
T Consensus 215 ~~~~~i~~~~~~~~~We~~ 233 (236)
T PF09325_consen 215 YAESQIEYQKKMLEAWETF 233 (236)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999865
|
This is the C-terminal dimerisation domain []. |
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=241.32 Aligned_cols=211 Identities=17% Similarity=0.234 Sum_probs=199.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc--hhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE--PQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E--~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
|+|+||.+.+.|++.|+.+|+.+.+.++.++++|++++.++.+||.++..|+.+| ++|+.+|.++|++.++++..+..
T Consensus 1 e~D~~F~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 1 EPDEWFIEKKQYLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999998 45999999999999999999887
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
.+.....+|+++|++|++++.|+|++|.+|.+++..|++++.+|.+++++++||..+ ++
T Consensus 81 -~a~~e~~~l~~~L~ey~r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~--~~------------------ 139 (216)
T cd07627 81 -QALQDVLTLGVTLDEYIRSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ--GK------------------ 139 (216)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC------------------
Confidence 777777899999999999999999999999999999999999999999999999754 11
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..++|++.++.+|.+++.+++.++.+++.|++.++.|+.+|+..|..+|+.+|..|++.+|++++++++.|+.|
T Consensus 140 --s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~dfk~~l~~~~e~~ie~~k~~ie~We~f 213 (216)
T cd07627 140 --TQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVEDFRNSVEIYLESAIESQKELIELWETF 213 (216)
T ss_pred --ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12599999999999999999999999999999999999999999999999999999999999999999999865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=236.12 Aligned_cols=211 Identities=19% Similarity=0.280 Sum_probs=200.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
+.|+|+||.+.+.|++.|+.+|+.+.+.++.++++|++++..+.+||.++..||.+|.+ |+.+|.++|++.++++.+.
T Consensus 7 ~~E~D~~F~~~k~~i~~Le~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~ 86 (224)
T cd07623 7 MDETDQWFEEKQQQIENLDQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLH 86 (224)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999999999999853 9999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++......|+++|++|++.+.++|++|..|..++..|++++.+|.++++.++||... +
T Consensus 87 ~~-qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl~~~--~----------------- 146 (224)
T cd07623 87 GE-QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKLELS--G----------------- 146 (224)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-----------------
Confidence 88 666777899999999999999999999999999999999999999999999999754 1
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
..+|+..++.+|.+++.++..++.+|+.|+..++.|+.||+..|..||+.+|..|++.+|++.+++++.|+.+
T Consensus 147 -----~~~K~~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~erv~dfk~~l~~~le~~i~~q~~~~~~We~~ 219 (224)
T cd07623 147 -----RTDKLDQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKNRVKDFKDIIIKYLESLLNTQQQLIKYWEAF 219 (224)
T ss_pred -----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1489999999999999999999999999999999999999999999999999999999999999999999865
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh |
| >cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-31 Score=229.94 Aligned_cols=189 Identities=37% Similarity=0.617 Sum_probs=178.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++.+|++|.++++|+++|+.+|..+.+++.++++++.+++.++.+||.+|+.|+.+|++|+.+|..+|.+.+.++..+..
T Consensus 9 ~~~~d~eF~e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~ 88 (200)
T cd07624 9 LKNRSPEFDKMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEV 88 (200)
T ss_pred hcCCCccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....|.+||++|.+|+.++|.+|+.|++++.+|+.+.++|.+|+.+
T Consensus 89 -l~~~~~~~f~e~Lkey~~y~~svk~~l~~R~~~q~~~e~~~e~L~~k~~~----------------------------- 138 (200)
T cd07624 89 -LLSDHEFVFLPPLREYLLYSDAVKDVLKRRDQFQIEYELSVEELNKKRLE----------------------------- 138 (200)
T ss_pred -HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 77777779999999999999999999999999999999999999988765
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
++.+++.++++++.++..++.|+.||+..|..||+.+|.+||+.||+||+++++.|+.+
T Consensus 139 -----------------l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 139 -----------------LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23446778889999999999999999999999999999999999999999999999864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG1660|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=243.30 Aligned_cols=307 Identities=19% Similarity=0.295 Sum_probs=255.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccchh---h-------hc------------CCHHHHH-
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLEH---L-------NR------------YSKEFIL- 55 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~---~-------~~------------~~~~fie- 55 (357)
|.|. .++.|.|.+.+|+|||..+.. +|.|+||||-|+++.+... + +. ...+|++
T Consensus 51 p~~~-~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~ 129 (399)
T KOG1660|consen 51 PLFM-PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLAR 129 (399)
T ss_pred cCCC-CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHH
Confidence 7888 899999999999999999886 7889999999999987321 0 11 1234443
Q ss_pred --HHHHHHHHHHHHHHcCccccCChhhhccccccccchhhcccCC----CCccccchhhhhhhhhhhccccccCCChhHH
Q psy18202 56 --CRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHS----PGLLNKMSESFYNLTNIYTTMSLRHHHSEFE 129 (357)
Q Consensus 56 --~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~~~~~~~~k~~----~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~ 129 (357)
+-..+.+.||+||+.||+|+.+..|+.||+.+. ++....|+. +|+++++..+...+..+-. +++.|.+|.
T Consensus 130 fKKTvamhEvfl~RlaahPvlr~d~nf~vflEy~q-dLsvr~KNkkE~~~~f~k~~~kSAdeillSg~---lkdVddFfe 205 (399)
T KOG1660|consen 130 FKKTVAMHEVFLRRLAAHPVLRLDQNFSVFLEYDQ-DLSVRGKNKKESFGGFLKRFVKSADEILLSGK---LKDVDDFFE 205 (399)
T ss_pred HHHhhccHHHHHHHHhcCCeeecccchhhhhhhcc-cccccccchhhhhhHHHHHHhhhhhheeeecc---eeehhHHHH
Confidence 446788999999999999999999999999984 677766653 5566666655554433211 789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
..+.|+..|...++...-.++++...++..+.++..+|..++.++.-+.. +...+-..+..++.++.+... ...+.+.
T Consensus 206 ~ek~fl~ey~~~ikdas~kadKmt~~hK~~~ddy~~i~~~~~~lg~ed~~~v~~~~l~~~e~f~~~~k~e~R-vs~dedl 284 (399)
T KOG1660|consen 206 TEKNFLKEYHFRIKDASLKADKLTRAHKSVGDDYDQIGNRLNRLGEEDAANVKKFQLKEAEYFEEESKVERR-VSSDEDL 284 (399)
T ss_pred hhhHHHHHHhhHHhhhccchHHhhhhcccccccHHHHHHHHHHhhhhhhcccceeeecchhHHHHHHhHhhh-hchHHHH
Confidence 99999999999999999999999999999999999999999998766543 556666778888888887655 6666778
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.|.+.|++|.+...+.++++.+|.+.+.+|++++++|+|++++-.
T Consensus 285 kL~d~l~yy~r~~~aakdllyRr~Rcl~~ye~ank~l~kar~knk----------------------------------- 329 (399)
T KOG1660|consen 285 KLGDTLRYYDRDSCAAKDLLYRRERCLADYEAANKNLEKARAKNK----------------------------------- 329 (399)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHhccc-----------------------------------
Confidence 999999999999999999999999999999999999998876422
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+|..+|.....+..+|+.|++..++|+..|+..|.+.|+..|.+.++++|.+++..++.-
T Consensus 330 -----dv~~ae~~q~e~c~kfe~~s~~~k~eli~fk~rrvaaf~knl~el~eleikhak~~~~ll 389 (399)
T KOG1660|consen 330 -----DVHAAEAAQQEACQKFESISESAKEELIGFKTRRVAAFKKNLVELSELEIKHAKTNYSLL 389 (399)
T ss_pred -----cchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHhhhhhHHHH
Confidence 233456667788899999999999999999999999999999999999999998877653
|
|
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.7e-29 Score=221.64 Aligned_cols=210 Identities=25% Similarity=0.364 Sum_probs=198.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~~~~ 198 (357)
++|++|.++++|++.++.+++.+.+.+.++++++.+++.++.+||.+|..|+..|.. |+.++..+|++++.++...
T Consensus 1 e~d~~f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~ 80 (218)
T cd07596 1 EEDQEFEEAKDYILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLS 80 (218)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999998854 9999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++......|+++|++|.+++.++|++|.+|+.++.+|+.+.+.+.++++++++|..++
T Consensus 81 ~~-~~~~~~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl~~~~------------------- 140 (218)
T cd07596 81 EA-QANQELVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAP------------------- 140 (218)
T ss_pred HH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------------------
Confidence 87 7777778999999999999999999999999999999999999999999999998751
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
...++||+.++.+|.+++.+++.++.+++.|+..+..|+.+|+..+..+|+.+|..|++.||+|+++++++|+.
T Consensus 141 ---~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~ 214 (218)
T cd07596 141 ---GIKPAKVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWES 214 (218)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 02358999999999999999999999999999999999999999999999999999999999999999999975
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-29 Score=212.35 Aligned_cols=210 Identities=14% Similarity=0.213 Sum_probs=191.8
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
||+++++.+...+.. .+ ++|.|+||++.+.|+..|+.+|+++...+++++.+|++++.++..||.++..|+.+|..
T Consensus 1 ~~~~~~~k~~de~~~--~~--~kd~D~wFe~ek~~l~~~~~~Lk~~~~~~e~l~~~rk~la~~~~~~s~sl~~L~~~e~t 76 (218)
T cd07662 1 DFFKNVVKSADGVIV--SG--VKDVDDFFEHERTFLLEYHNRVKDSSAKSDRMTRSHKSAADDYNRIGSSLYTLGTQDST 76 (218)
T ss_pred CHHHhhhhhhhHHHH--hc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 345556555554433 23 89999999999999999999999999999999999999999999999999999999866
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|.+++++++++..+... ++.+.+.+|++.|++|++++.|+|++|.+|.+++.+|++++++|.|+|..-
T Consensus 77 ~L~~~l~~laev~eki~~l~~~-~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~~------ 149 (218)
T cd07662 77 DICKFFLKVSELFDKTRKIEAR-VAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAKN------ 149 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------
Confidence 999999999999999999887 777778899999999999999999999999999999999999999998861
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.+|.++|.++++++.+|+.|++.++.|+.||+..|..+|+++|.+|
T Consensus 150 ----------------------------------kev~~aE~~~~~a~~~Fe~IS~~aK~El~rF~~~Rv~~Fkk~Lv~y 195 (218)
T cd07662 150 ----------------------------------KDVLQAETTQQLCCQKFEKISESAKQELIDFKTRRVAAFRKNLVEL 195 (218)
T ss_pred ----------------------------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2467789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy18202 339 ADQQIAYYQQRSDRGN 354 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++..++.|.
T Consensus 196 ~E~~lkhak~~~~~~~ 211 (218)
T cd07662 196 AELELKHAKGNLQLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999983
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays |
| >cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-29 Score=215.19 Aligned_cols=210 Identities=17% Similarity=0.233 Sum_probs=188.5
Q ss_pred Cccccchhhhh-hhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch
Q psy18202 100 GLLNKMSESFY-NLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP 178 (357)
Q Consensus 100 ~~~~~~~~~~~-~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~ 178 (357)
|+++.++.+.. .+.. .+ ++|.|+||++.+.|+..|+.+|+.+...+++++.+|++++.++..||.++..||.+|.
T Consensus 1 g~~k~~~k~~D~~v~~--~~--~~d~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~ 76 (219)
T cd07621 1 GFLKSISKSADEELLL--SG--QKDVDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEP 76 (219)
T ss_pred CHHHHhHHhhhHHHHc--CC--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 44555554444 2221 13 8999999999999999999999999999999999999999999999999999999987
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 179 Q-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 179 ~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
. |+.++.++|+.++++..+... ++.+.+.+|+++|++|+++++|+|++|.+|.+++.+|++++++|+|+++.-
T Consensus 77 t~L~~~ls~lae~~ek~~~l~~r-~A~~d~l~L~e~L~~Y~r~~~A~K~~l~rR~ral~~~q~A~k~L~KaR~k~----- 150 (219)
T cd07621 77 TPLDKFLLKVAETFEKLRKLEGR-VASDEDLKLSDTLRYYMRDTQAAKDLLYRRLRCLANYENANKNLEKARAKN----- 150 (219)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhch-----
Confidence 6 999999999999999999887 777777899999999999999999999999999999999999999998621
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
.+|.++|.++++++.+|+.|++.++.|+.||+..|..+|+..|.+
T Consensus 151 -----------------------------------~~v~~AE~~~~~a~~~Fe~iS~~~k~El~rF~~~Rv~~fk~~lve 195 (219)
T cd07621 151 -----------------------------------KDVHAAEAAQQEACEKFESMSESAKQELLDFKTRRVAAFRKNLVE 195 (219)
T ss_pred -----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy18202 338 IADQQIAYYQQRSDRGN 354 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~ 354 (357)
|++.+|.+++..+++|.
T Consensus 196 ~aE~~ik~Ak~~~~~l~ 212 (219)
T cd07621 196 LAELEIKHAKAQIQLLK 212 (219)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999983
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain |
| >cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-28 Score=211.13 Aligned_cols=210 Identities=15% Similarity=0.270 Sum_probs=189.3
Q ss_pred CccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh
Q psy18202 100 GLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~ 179 (357)
|++++++.++..+.- .| ++|.|+||++.+.|+..|+.+|+.+...+++++++|++++.++..||.++..++..|+.
T Consensus 1 ~~~~~~~k~~~e~~~--~~--~ke~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~~s~al~~l~~ee~t 76 (218)
T cd07663 1 GFFKNMVKSADEVLF--SG--VKEVDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIHISAALNSVAAEEPT 76 (218)
T ss_pred CHHHHHHHhHHHHHH--hc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 466777777766543 34 89999999999999999999999999999999999999999999999999988644443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 180 -LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 180 -l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
|+.+|.++|+.++++..+... ++.+.+.+|+++|++|+++++|+|++|.+|.+++.+|++++.+|.|++...
T Consensus 77 ~L~kals~lae~~Ek~~~l~~r-~A~~d~~~L~e~L~~Y~r~~~A~K~ll~rR~ral~~~e~A~~~L~KaR~k~------ 149 (218)
T cd07663 77 VIKKYLLKVAELFEKLRKVEDR-VASDQDLKLTELLRYYMLNIEAAKDLLYRRARALADYENSNKALDKARLKS------ 149 (218)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Confidence 999999999999999999877 777777899999999999999999999999999999999999999998421
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
.+|.++|.++..++.+|+.|++.++.|+.||+..|..+|+..|.+|
T Consensus 150 ----------------------------------kev~~aE~~~~ea~~~Fe~IS~~~k~El~rF~~~Rv~~Fk~~lve~ 195 (218)
T cd07663 150 ----------------------------------KDVKQAEAHQQECCQKFEKLSESAKQELISFKRRRVAAFRKNLIEM 195 (218)
T ss_pred ----------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356678888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q psy18202 339 ADQQIAYYQQRSDRGN 354 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++..++.|.
T Consensus 196 ~E~~ik~ak~~~~~~~ 211 (218)
T cd07663 196 TELEIKHAKNNVSLLQ 211 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999883
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It |
| >cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=208.48 Aligned_cols=187 Identities=20% Similarity=0.349 Sum_probs=174.9
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++.+|++|.++++|++.++.+|..+.+++.|++++..++..++.+||.+|+.|+.+|+.|..+|..+|++++.++..++.
T Consensus 9 ~~~~d~~F~~ikey~~~L~~~l~~iekv~~Rl~~r~~~l~~~~~e~g~~f~~ls~~E~~l~~~le~~g~~~d~~~~~~~~ 88 (201)
T cd07622 9 LRNPDKRFEDLKNYSDELQTNLNNLLKVRARLAERLYGVYKIHANYGRVFSEWSAIEKEMGDGLQKAGHYMDSYAASIDN 88 (201)
T ss_pred CCCCCHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
..+. +..|.+||++|..|+.++|.+|+.|+.++.+++.+.+.|.+++++
T Consensus 89 -~~~~-~~~f~e~LkEy~~ya~slk~vlk~r~~~q~~~e~~~~~L~~k~~~----------------------------- 137 (201)
T cd07622 89 -GLED-EELIADQLKEYLFFADSLRAVCKKHELLQYDLEKAEDALANKKQQ----------------------------- 137 (201)
T ss_pred -HHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------
Confidence 4443 368999999999999999999999999999999999888877443
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++.+++.++..++.+++.++.|+.||+..|..||+.+|.+||..||+||++++++|+-
T Consensus 138 -----------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~K~~dlk~~l~~~A~~qi~~~~~~~~~W~~ 195 (201)
T cd07622 138 -----------------GEEAVKEAKDELNEFVKKALEDVERFKKQKVRDLKEILISYAKLQIKLAKKGLQTWTN 195 (201)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999964
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and |
| >cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-27 Score=205.95 Aligned_cols=212 Identities=14% Similarity=0.141 Sum_probs=200.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP--QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~--~l~~~l~~~~~~~~~~~~~~ 198 (357)
|.|+.+++.+++.-++.++...+++...++++++++++|+.+..+||.++..|+.+|. +|+.++..+|+..+.++++.
T Consensus 13 p~d~~~el~~~rp~vk~~y~~~~~l~~~~~~lvk~rr~La~~~~dfg~~l~~Ls~~E~~~~L~~a~~kLg~v~~~v~dl~ 92 (230)
T cd07625 13 PYDEYTELAEFRPLVKSIYLTAQDLQEKLLRVSKARKQLSLEEADFGQKLIQLSVEETHHGLGNLYEKFGKVLTAVGDID 92 (230)
T ss_pred CCCCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhHH
Confidence 7789999999999999999999999999999999999999999999999999999995 49999999999999999997
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. .+......|+++|.+|++.+.++|++|..|..++.+|++++.++.+|+...++|..++
T Consensus 93 ~~-QA~~d~~tl~d~L~~~~~~~~~vKealtnR~~~~re~~qAq~~~~~K~~~~~rlk~s~------------------- 152 (230)
T cd07625 93 SI-QATVDMATLYDGLEWISRDAYVVKEALTNRHLLMRELIQAQQNTKSKQEAARRLKAKR------------------- 152 (230)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------------
Confidence 76 6666778999999999999999999999999999999999999999999999998651
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
..+++|++.+..++++++..++.+..+++.|+.+|..|+.||..++..||+.+|.+|+..+|++.++.+..|+.
T Consensus 153 ---~i~~~KvdeA~~~l~eA~~~e~~l~~k~~rIs~nm~~E~~rf~~~~~~dl~~~l~ey~~~~ie~erk~l~~lE~ 226 (230)
T cd07625 153 ---DINPLKVDEAIRQLEEATKHEHDLSLKLKRITGNMLIERKEWTDWTEEDLQSAIREYTLRKIEYERKKLSLLER 226 (230)
T ss_pred ---CCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12368999999999999999999999999999999999999999999999999999999999999999999975
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=205.57 Aligned_cols=181 Identities=20% Similarity=0.272 Sum_probs=170.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
++|++|.++++|+++|+.+|..+.+++.|++++..+++.++.+||.+|+.|+.+|++ |+.+|..+|.+++.++..+.+
T Consensus 1 ~~d~~F~ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~- 79 (185)
T cd07628 1 KPDKEFLEIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRV- 79 (185)
T ss_pred CCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHH-
Confidence 478999999999999999999999999999999999999999999999999999999 999999999999999999888
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
+++.++..|.+||++|..|+.++|.+|+.|++++.+|+.+.++|
T Consensus 80 l~~~~~~~f~~~Lkd~~~y~~s~k~~lk~R~~kq~d~e~l~e~l------------------------------------ 123 (185)
T cd07628 80 LNKYTDENYLTSLKDLLHYILSLKNLIKLRDQKQLDYEELSDYL------------------------------------ 123 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH------------------------------------
Confidence 88877789999999999999999999999999999999988777
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNCN 356 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~ 356 (357)
++.+++.++..++.+++.+..|+.||++.|..||+.+|.+||..||+||+++++.|+-+
T Consensus 124 ----------------l~~~ve~a~~~~e~f~~~~~~E~~rF~~~k~~elk~~l~~~a~~qi~~y~~~~~~W~~~ 182 (185)
T cd07628 124 ----------------LTDEVENAKETSDAFNKEVLKEYPNFERIKKQEIKDSLGALADGHIDFYQGLVEDWEKV 182 (185)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 12346788889999999999999999999999999999999999999999999999753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-27 Score=201.89 Aligned_cols=189 Identities=13% Similarity=0.177 Sum_probs=175.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP----QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~----~l~~~l~~~~~~~~~~~~~~ 198 (357)
|.|+||.+.+.|+..|+.+|+.+.+.++.|+++|++++.++.+||.++..|+.+|. .|+.+|..++++++.+..+.
T Consensus 1 d~D~~F~~~k~yl~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~ 80 (198)
T cd07630 1 DVDEFFQKERDMNTKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENI 80 (198)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999983 47999999999999999998
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.. ++.+...+|+++|++|+++++++|++|.+|.+++.+|++++++|.|++.++
T Consensus 81 ~~-~a~~d~~~Lg~~L~~Y~r~i~a~K~~l~~R~~~~~~~~~a~k~l~Kar~~k-------------------------- 133 (198)
T cd07630 81 EV-VAGNNENTLGLTLDLYSRYSESEKDMLFRRTCKLIEFENASKALEKAKPQK-------------------------- 133 (198)
T ss_pred HH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh--------------------------
Confidence 87 777788899999999999999999999999999999999999999865432
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
++.+|.+++.++.+|+.|+..++.||.||+..|..+|+..|..|++.+|.+.+..+++|.
T Consensus 134 ----------------~~~ae~~~~~a~~~fe~iS~~~k~EL~rF~~~Rv~~fk~~l~~~~E~~i~~ak~~~~~~~ 193 (198)
T cd07630 134 ----------------KEQAEEAKKKAETEFEEISSLAKKELERFHRQRVLELQSALVCYAESQIKNAKEAAAVLT 193 (198)
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567778899999999999999999999999999999999999999999999999994
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=213.60 Aligned_cols=332 Identities=23% Similarity=0.310 Sum_probs=201.2
Q ss_pred CCCCCCcc---eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-hhcCCHHHHHHHHHHHHHHHHHHHcCccccC
Q psy18202 1 PEFPDTEC---IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-LNRYSKEFILCRMKLLDQFLRRVTSHPVLSV 76 (357)
Q Consensus 1 p~f~~~~~---~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~ 76 (357)
|-|..... +|.||||||.|||..|...||+|+|||+|+|+....+ .++|+++|++.|+.+|+.|+++++.||.|.+
T Consensus 163 ~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP~K~~~s~~~~~~~~~~~i~~r~~~L~~~~~~~~~hp~lsn 242 (524)
T COG5391 163 PSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLPSKKSNSEYYGDRFSDEFIEERRQSLQNFLRRVSTHPLLSN 242 (524)
T ss_pred ccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCCchhhhccccccccchHHHHHHHHHHHHHHHHHhcCccccc
Confidence 55677777 9999999999999999999999999999999987432 3689999999999999999999999999999
Q ss_pred Chhhhccccccccchhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 77 NSHAIIFLTAKLAEFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIG 149 (357)
Q Consensus 77 ~~~~~~FL~~~~~~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~ 149 (357)
+. ...+| ..+.+ +.....+.+... .... ....+.+..++.....+....+.+.....
T Consensus 243 ~~------~~~~~--~~~~~~~~~~~~~~~s~~~~~~~d---~~~t-----~~~~~~~~~el~~~~s~~~~~~~s~~~~~ 306 (524)
T COG5391 243 YK------NSKSW--ESHSTLLSSFIENRKSVPTPLSLD---LTST-----TQELDMERKELNESTSKAIHNILSIFSLF 306 (524)
T ss_pred cc------ccccH--hhhhHHHHHhhhcccccCcccccc---hhhh-----hhhchhhhhhhhhhHHHHHHhhhhHHHHH
Confidence 77 22222 21111 111011111110 0001 22333344444444444444444444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhcchhHHHHHHHH
Q psy18202 150 TRLYKERKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTA----SLHKNLLIEPFHEHNSHPMKDYLMYI 221 (357)
Q Consensus 150 ~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~~~ 221 (357)
+.+..........+..+...+..+.....+ ....+.......-... ..... .....+..+...++..-.+.
T Consensus 307 ~~i~~~~~~~~e~~t~l~~~~~~l~~~~~~~~~~~~k~~~~~~n~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~e~~~ 385 (524)
T COG5391 307 EKILIQLESEEESLTRLLESLNNLLLLVLNFSGVFAKRLEQNQNSILNEGVVQAETLRS-SLKELLTQLQDEIKSRESLI 385 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhhhhHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 444444444444444444444333222211 1111111111000000 00000 11112234444555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC-cccCCCcccccCCccH-HHHHHHHhhHhHHH
Q psy18202 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSST-ATSSTNSYSLWKSTSE-DRLEKLSTAIPKLT 299 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~-~ki~~l~~~i~~le 299 (357)
.....++..++..+...+.....+.+...+......+ .+..++.+ .+..+.++. .-.++ .++..|+.++..++
T Consensus 386 ~t~~~l~k~~~~~~~~~~~~~~~~~~~s~~~~~~~~~---~~~~t~~~~~~~~~~~~~--~e~sr~k~~~~Lqq~~~~l~ 460 (524)
T COG5391 386 LTDSNLEKLTDQNLEDVEELSRSLRKNSSQRAVVSQQ---PEGLTSFSKLSYKLRDFV--QEKSRSKSIESLQQDKEKLE 460 (524)
T ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHhhhhhhhhhhcc---cccccccccccccccccc--cchhHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555554444433222211 11111111 111222222 12233 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+.+..+..++..|++.+..|++.|...+..++..++..|+++++++++..+++|.
T Consensus 461 ~~L~~a~~d~~~i~e~~~~el~~~~~~~~~~l~~~l~~~~~~hie~~~~~Le~W~ 515 (524)
T COG5391 461 EQLAIAEKDAQEINEELKNELKFFFSVRNSDLEKILKSVADSHIEWAEENLEIWK 515 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999996
|
|
| >cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-28 Score=191.46 Aligned_cols=86 Identities=48% Similarity=0.851 Sum_probs=81.6
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+.+++.|+|||+||+|||+.|...|||++|||||+|..+.++.++++++||++|+++|+.||++|+.||+|+.|++|
T Consensus 30 ~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~ri~~hp~L~~s~~~ 109 (116)
T cd07284 30 SEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLPEKFVMKGMVERFNEDFIETRRKALHKFLNRIADHPTLTFNEDF 109 (116)
T ss_pred CCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCCCcchhhhccccCCHHHHHHHHHHHHHHHHHHHcCcccccChHH
Confidence 67899999999999999999999999999999999999998766567789999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 110 ~~FL~~ 115 (116)
T cd07284 110 KIFLTA 115 (116)
T ss_pred HHhhcC
Confidence 999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30, |
| >cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30 | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-28 Score=189.31 Aligned_cols=86 Identities=55% Similarity=0.920 Sum_probs=81.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+..+|.|+|||+||+|||+.|...||+++|||||+|..+.+..++++++||++||++|+.||++|+.||+|+.|++|
T Consensus 30 ~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~L~~s~~~ 109 (116)
T cd07283 30 TEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLPEKFVVKGVVDRFSEEFVETRRKALDKFLKRIADHPVLSFNEHF 109 (116)
T ss_pred CCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCCCcccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccccCcHH
Confidence 67889999999999999999999999999999999999998765567889999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 110 ~~FLt~ 115 (116)
T cd07283 110 NVFLTA 115 (116)
T ss_pred HHhhcC
Confidence 999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32 |
| >KOG2528|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-26 Score=211.94 Aligned_cols=218 Identities=20% Similarity=0.328 Sum_probs=169.2
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+...|.|||.+|.|||++|..+||.+.|||||+|++. ++|.++||++||+.|+-|++++++||+|++++.|+.||+
T Consensus 215 t~~~v~rrykhfdwl~~rl~~kf~~i~vp~Lpdkq~~----gr~Ee~fi~~rr~~l~~wm~~~~~hpvlsq~evf~hFl~ 290 (490)
T KOG2528|consen 215 TNISVSRRYKHFDWLYERLLLKFPLIPVPPLPDKQVT----GRFEEDFIEKRRKGLQWWMNHMCRHPVLSQCEVFQHFLT 290 (490)
T ss_pred cCcchhhcccccHHHHHHHHhhcccccCCCCCccccc----cchhHHHHHHHHHHHHHHHHHhhcchHhhhhHHHHHHHc
Confidence 4567999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cc-c-cchhhccc--CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHH
Q psy18202 86 AK-L-AEFSMHKK--HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYV 160 (357)
Q Consensus 86 ~~-~-~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~ 160 (357)
++ + ..|...++ .+..+.+.+--++. + . .+.+.+.+...+.++.+++..++.+..|......+.++.- .+-
T Consensus 291 c~~dek~Wk~GKRkAEkDe~~g~~~~~~~-p-~---~ld~~~ve~~ve~~~~f~k~md~~~~~l~~~~~~~~k~~~~~~k 365 (490)
T KOG2528|consen 291 CPTDEKAWKQGKRKAEKDELVGNFLLTIS-P-A---PLDLQEVEMQVERFKRFTKKMDDAVRQLNTTANEFWKRKVGGFK 365 (490)
T ss_pred CCcccccccccccccccCCcccceeeccC-C-c---ccchHHHHHHHHhhhhhhhhhhHHHHHHhhhhHHHHHHhcccch
Confidence 96 4 23554433 22222222211111 1 1 1226677778888899999999999888887777775552 244
Q ss_pred HHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH
Q psy18202 161 SEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD 232 (357)
Q Consensus 161 ~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~ 232 (357)
..+..+|.+|..|+.. +..|+.++...|+.+..+++++.++-..++ ..+++.|..|.+.+..+-+++....
T Consensus 366 ke~qk~g~a~~~l~~~f~~d~~~~s~~L~~ai~~~g~~y~~Ig~lfa~qpk~Dl-~p~~d~l~~y~G~l~nfpDII~~hK 444 (490)
T KOG2528|consen 366 KEYQKMGSAFQTLAQAFEIDPTVDSRPLNEAIGLTGDAYHEIGELFAEQPKQDL-DPVMDLLVLYQGHLQNFPDIIHVHK 444 (490)
T ss_pred HHHHHHHHHHHHHHHhhhcCccccccchhhhhhhhhHHHHHHHHHhhcccccch-hHHHHHHHHhhcccccccchhhhhH
Confidence 5556666666666542 345999999999999999999877333333 5899999999999999999998775
Q ss_pred H
Q psy18202 233 V 233 (357)
Q Consensus 233 ~ 233 (357)
.
T Consensus 445 ~ 445 (490)
T KOG2528|consen 445 G 445 (490)
T ss_pred H
Confidence 4
|
|
| >cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-27 Score=187.01 Aligned_cols=79 Identities=37% Similarity=0.574 Sum_probs=76.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+++.|+||||||.|||+.|...|||++|||||+|..+ ++|+++||++|+++|+.||++|+.||+|+.|+.|+.||+
T Consensus 30 ~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP~K~~~----g~f~~~FIe~Rr~~Lq~FL~ria~hp~L~~s~~~~~FL~ 105 (127)
T cd07286 30 TGLQVHRRYKHFDWLYARLAEKFPVISVPHIPEKQAT----GRFEEDFISKRRKGLIWWMDHMCSHPVLARCDAFQHFLT 105 (127)
T ss_pred CceEEECCCcHHHHHHHHHHHHCCCcEeCCCcCCCcC----CCCCHHHHHHHHHHHHHHHHHHHcCcccccChHHHHHhc
Confidence 6789999999999999999999999999999999987 789999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
.+.
T Consensus 106 ~~~ 108 (127)
T cd07286 106 CPS 108 (127)
T ss_pred CCc
Confidence 873
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki |
| >cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-27 Score=187.30 Aligned_cols=84 Identities=25% Similarity=0.388 Sum_probs=79.4
Q ss_pred CCCCCCcc-eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTEC-IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~-~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|+++++ .|+|||+||+|||++|..++|||+|||||+|.+.. +.++.+|+++|+.+||+||+||+.||+|..|++
T Consensus 56 p~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP~k~~~~---~~~~~E~~~~rr~~LqrfL~RV~~hP~L~~d~~ 132 (140)
T cd06891 56 PTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALPLPSTSY---GSNNEEDARKLKANLQRWFNRVCSDPILIRDEE 132 (140)
T ss_pred cccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCCCccccC---CCCCHHHHHHHHHHHHHHHHHHhCChhhccCHH
Confidence 78999999 79999999999999999999999999999999763 677899999999999999999999999999999
Q ss_pred hhcccccc
Q psy18202 80 AIIFLTAK 87 (357)
Q Consensus 80 ~~~FL~~~ 87 (357)
|+.||+++
T Consensus 133 l~~FLEsd 140 (140)
T cd06891 133 LRFFIESD 140 (140)
T ss_pred HHHHhccC
Confidence 99999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur |
| >cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=183.35 Aligned_cols=87 Identities=57% Similarity=0.997 Sum_probs=81.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+.+.|.|+|||+||.|||+.|...|||++|||||+|..+.+..++++++||++||++||.||++|+.||.|++|+.|
T Consensus 30 ~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~hp~l~~s~~l 109 (116)
T cd06860 30 SEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLPEKHSVKGLLDRFSPEFVATRMRALHKFLNRIVEHPVLSFNEHL 109 (116)
T ss_pred CCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCCCcchhhhhcccCCHHHHHHHHHHHHHHHHHHHcCcccccCcHH
Confidence 56888999999999999999999999999999999999998655557899999999999999999999999999999999
Q ss_pred hcccccc
Q psy18202 81 IIFLTAK 87 (357)
Q Consensus 81 ~~FL~~~ 87 (357)
+.||++.
T Consensus 110 ~~FLt~~ 116 (116)
T cd06860 110 KVFLTAK 116 (116)
T ss_pred HHhhcCC
Confidence 9999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal |
| >cd07629 BAR_Atg20p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg20p | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-24 Score=183.10 Aligned_cols=179 Identities=18% Similarity=0.278 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKIS-AFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHK 199 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~-~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~ 199 (357)
++|++|.+++.++++|+..|. .+.++..++.++..+++.++.+||.+|+.||..|++ |+.+|..+|.+++.++...+
T Consensus 1 ~~d~~F~~~e~~~~~~~~~L~~~l~kv~~Ri~k~~~~l~~dl~elG~~fn~ls~~E~~~~L~~~le~~g~a~D~~~~~~~ 80 (187)
T cd07629 1 EPDDEFTDIEAETKKYEQLLHGGMEKVNRRITKRLGDLAEDMADLGGRFNAFSLEEQKSELAEALEKVGQAVDSTYLATE 80 (187)
T ss_pred CcchHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999995 899999999999999999999999999999999964 89999999999999999988
Q ss_pred HHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccc
Q psy18202 200 NLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL 279 (357)
Q Consensus 200 ~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~ 279 (357)
. +.+.+...|.+||++|+.|+.+++.+|+.|+.++.+|+.+.+.| .+.
T Consensus 81 ~-l~~~l~~~f~EpL~E~~~y~~s~k~vlk~R~~K~~Q~e~l~~~L------~e~------------------------- 128 (187)
T cd07629 81 A-LVGSLYYNINEPLSESAQFAGVVRELLKYRKLKHVQYEMTKDSL------LES------------------------- 128 (187)
T ss_pred H-HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH-------------------------
Confidence 8 77888889999999999999999999999999999999888877 110
Q ss_pred cCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTA-NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 280 ~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i-~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
..+ +..++..+ +..+..|++||+++|..||+.+|.+||..|++|+++++++|..
T Consensus 129 ---------------------~~~-~~~~~~~~~~~~~~~el~rF~~ek~~dl~~~l~~~a~~~~~~a~~~~~~W~~ 183 (187)
T cd07629 129 ---------------------ALV-AASDDLVISSTIKQKDLPRFQREREADLREILKNYSKYHKDWAKQNLEAWKE 183 (187)
T ss_pred ---------------------HHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012 22345556 5888899999999999999999999999999999999999964
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The function of Atg20p is unknown but it has been shown to interact with Atg11p, which plays a role in linking cargo molecules with vesicle-forming components. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5 | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-27 Score=183.35 Aligned_cols=87 Identities=34% Similarity=0.636 Sum_probs=74.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccchhh----------hcC-CHHHHHHH----------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLEHL----------NRY-SKEFILCR---------- 57 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~~~----------~~~-~~~fie~R---------- 57 (357)
|.|++.+++|+|||+||.|||++|.. +||||||||+|+|+.+.+.. +.+ ..+|++.|
T Consensus 28 ~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlPeK~~~~~~~~k~~kl~~~~~~~~~eef~~~r~~~~~~~~~~ 107 (141)
T cd07291 28 PSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAPPKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAV 107 (141)
T ss_pred ccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCCCCccccchHHhhhhcccCcccccHHHHHHHHHHhhhhhhhH
Confidence 78999999999999999999999997 78999999999999873311 111 35777744
Q ss_pred ----HHHHHHHHHHHHcCccccCChhhhcccccc
Q psy18202 58 ----MKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87 (357)
Q Consensus 58 ----~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~ 87 (357)
+++||+||+||++||+|++|+.|+.||+.+
T Consensus 108 ~kk~~a~lE~fL~Ria~HP~l~~d~~f~~FLe~~ 141 (141)
T cd07291 108 FKKTVQVHEVFLQRLSSHPSLSKDRNFHIFLEYD 141 (141)
T ss_pred HHHHHHHHHHHHHHHhhCCeeccCcchhhhccCC
Confidence 577999999999999999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting |
| >cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-26 Score=179.71 Aligned_cols=87 Identities=32% Similarity=0.624 Sum_probs=73.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHh--CCCCCCCCCCCccccch---hhh-------cCC-HHHH-------------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLLE---HLN-------RYS-KEFI------------- 54 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~--~p~~~iPplP~K~~~~~---~~~-------~~~-~~fi------------- 54 (357)
|.|++++++|+|||+||.|||++|..+ |||+||||+|+|+.+.. .++ .+. .+|.
T Consensus 28 p~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~~~~~~~k~~klg~~~~~~~~ee~~~~~~~l~~~~~~~ 107 (141)
T cd07292 28 PNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPDFDASREKLQKLGEGEGSMTKEEFTKMKQELEAEYLAI 107 (141)
T ss_pred cccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCccccchHHHHHhhccccccchHHHHHHHHHHhHHHHHHH
Confidence 789999999999999999999999965 89999999999997621 111 122 2343
Q ss_pred -HHHHHHHHHHHHHHHcCccccCChhhhcccccc
Q psy18202 55 -LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87 (357)
Q Consensus 55 -e~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~ 87 (357)
.+|+++||+||+||++||+|++|..|+.||+.+
T Consensus 108 ~kk~~a~~E~Fl~Ria~HP~l~~D~~f~~FLe~~ 141 (141)
T cd07292 108 FKKTVAMHEVFLCRVAAHPILRKDLNFHVFLEYN 141 (141)
T ss_pred HHHHHHHHHHHHHHHhcCCccccCcchhheeccC
Confidence 277899999999999999999999999999853
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo |
| >cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.93 E-value=6e-26 Score=179.42 Aligned_cols=85 Identities=33% Similarity=0.568 Sum_probs=76.9
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC-CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS-HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
.++++|+||||||.|||+.|...||+ ++|||||+|..+ ++|+++||++|+++|++||++|++||+|+.|+.|+.|
T Consensus 29 ~~~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP~K~~~----g~f~~~FIe~Rr~~Le~FL~ri~~hP~L~~~~~l~~F 104 (126)
T cd07285 29 NTNRSVNHRYKHFDWLYERLLVKFGLAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQF 104 (126)
T ss_pred cCCeEeeCCccHHHHHHHHHHHhcCCCcccCCCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHcCcCcCCCcHHHHH
Confidence 46789999999999999999999975 459999999987 7899999999999999999999999999999999999
Q ss_pred cccccc-chhh
Q psy18202 84 LTAKLA-EFSM 93 (357)
Q Consensus 84 L~~~~~-~~~~ 93 (357)
|+.++. +|..
T Consensus 105 L~~~~~~~w~~ 115 (126)
T cd07285 105 LNFRDEKEWKT 115 (126)
T ss_pred hCCCCHHHHHh
Confidence 998752 3443
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T |
| >cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-25 Score=178.89 Aligned_cols=87 Identities=34% Similarity=0.542 Sum_probs=78.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccch------hhhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLE------HLNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~------~~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|+.++|.|+|||+||+|||+.|...|| |++|||+|+|..+.. ..+.++++||++||++|+.||++|++||
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p 109 (124)
T cd07282 30 SMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSSSTEFVEKRRAALERYLQRTVKHP 109 (124)
T ss_pred CccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCc
Confidence 57889999999999999999999999987 899999999997621 1134689999999999999999999999
Q ss_pred cccCChhhhcccccc
Q psy18202 73 VLSVNSHAIIFLTAK 87 (357)
Q Consensus 73 ~L~~~~~~~~FL~~~ 87 (357)
.|++|+.|+.||++.
T Consensus 110 ~l~~s~~~~~FL~~~ 124 (124)
T cd07282 110 TLLQDPDLRQFLESS 124 (124)
T ss_pred ccccChHHHHhhcCC
Confidence 999999999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort |
| >cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=177.56 Aligned_cols=86 Identities=35% Similarity=0.597 Sum_probs=78.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|...++.|+|||+||.|||+.|.. +||++|||||+|..+... .++++++|+++||++|+.||++|++||+|+
T Consensus 31 p~~~~~~~~V~RRYsDF~~L~~~L~~-~~~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hP~l~ 109 (123)
T cd07293 31 PIFKLKESTVRRRYSDFEWLRSELER-ESKVVVPPLPGKALFRQLPFRGDDGIFDDSFIEERKQGLEQFLNKVAGHPLAQ 109 (123)
T ss_pred CccccCceEEECCchHHHHHHHHHHh-ccCCccCCCCCCchhhhcccccccCCCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 67888999999999999999999975 589999999999986321 257899999999999999999999999999
Q ss_pred CChhhhcccccc
Q psy18202 76 VNSHAIIFLTAK 87 (357)
Q Consensus 76 ~~~~~~~FL~~~ 87 (357)
+|+.|+.||+.+
T Consensus 110 ~~~~l~~FL~~~ 121 (123)
T cd07293 110 NERCLHMFLQDE 121 (123)
T ss_pred cCcHHHhhcCCC
Confidence 999999999875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f |
| >cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=175.19 Aligned_cols=83 Identities=37% Similarity=0.735 Sum_probs=78.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|....|.|+|||+||.|||+.|...|||+++||+|+|..+ ++++++|+++||++|+.||++|+.||+|++|+.|
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP~K~~~----~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~ 105 (112)
T cd06861 30 PNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPPEKQSV----GRFDDNFVEQRRAALEKMLRKIANHPVLQKDPDF 105 (112)
T ss_pred CCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCCCcccc----cCCCHHHHHHHHHHHHHHHHHHHCCcccccCcHH
Confidence 467888999999999999999999999999999999999987 7889999999999999999999999999999999
Q ss_pred hcccccc
Q psy18202 81 IIFLTAK 87 (357)
Q Consensus 81 ~~FL~~~ 87 (357)
+.||+++
T Consensus 106 ~~FL~~~ 112 (112)
T cd06861 106 RLFLESE 112 (112)
T ss_pred HHhcCCC
Confidence 9999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P |
| >cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6 | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=178.24 Aligned_cols=86 Identities=38% Similarity=0.600 Sum_probs=76.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHh--CCCCCCCCCCCccccc---------hhh-hcCCHHHHHHHHHHH-------
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLL---------EHL-NRYSKEFILCRMKLL------- 61 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~--~p~~~iPplP~K~~~~---------~~~-~~~~~~fie~R~~~L------- 61 (357)
|+|++++++|+|||+||+|||+.|..+ |||+||||+|+|+.+. |.. +.++.+|+++|+..|
T Consensus 28 ~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~~~~~~~~k~~klg~~d~~~~~ef~~~r~~~Le~~y~~~ 107 (141)
T cd06892 28 PTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKPDFDASREKLQKLGEGEGSMTKEEFEKMKQELEAEYLAI 107 (141)
T ss_pred ccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCcccccccceeeecccCccccchHHHHHHHHHHhHHHHHH
Confidence 789999999999999999999999976 8999999999998651 111 347899999999988
Q ss_pred --------HHHHHHHHcCccccCChhhhccccc
Q psy18202 62 --------DQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 62 --------~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
++||+||+.||+|+++..|+.||+.
T Consensus 108 ~~k~v~~~e~FL~RiA~HP~L~~~~~l~~FLe~ 140 (141)
T cd06892 108 FKKTVAMHEVFLRRLASHPVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHHHHHHHHHhccCCeeecCHhHHhhhcC
Confidence 5899999999999999999999985
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som |
| >cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12 | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-25 Score=175.37 Aligned_cols=87 Identities=33% Similarity=0.572 Sum_probs=78.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccc-----hhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLL-----EHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~-----~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|+..++.|+||||||.|||+.|.. .||++|||||+|.... +..++++++||++|+++|+.||++|++||.|+
T Consensus 33 ~~~~~~~~~V~RRYsDF~~L~~~L~~-~~g~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~i~~hp~l~ 111 (132)
T cd07294 33 PIFKLKESCVRRRYSDFEWLKNELER-DSKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 111 (132)
T ss_pred CCcccceeEEeCCccHHHHHHHHHHH-cCCCccCCCCCCceeccccccccccCCCHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 56888999999999999999999975 5899999999999742 12257899999999999999999999999999
Q ss_pred CChhhhccccccc
Q psy18202 76 VNSHAIIFLTAKL 88 (357)
Q Consensus 76 ~~~~~~~FL~~~~ 88 (357)
+|+.|+.||+.+.
T Consensus 112 ~~~~l~~FL~~~~ 124 (132)
T cd07294 112 NERCLHMFLQDET 124 (132)
T ss_pred cChHHHHhcCCCC
Confidence 9999999999884
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated. |
| >cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19 | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=171.62 Aligned_cols=85 Identities=38% Similarity=0.565 Sum_probs=79.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc-CChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS-VNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~-~~~~ 79 (357)
|.|....+.|+|||+||.|||+.|...||++.|||+|+|..+ ++++++||++|+++|+.||++|++||+|+ .++.
T Consensus 31 ~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP~K~~~----~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~~s~~ 106 (116)
T cd07295 31 PAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLPGKIFT----NRFSDEVIEERRQGLETFLQSVAGHPLLQTGSKV 106 (116)
T ss_pred ccccccceEEecChhHHHHHHHHHHHHCCCCccCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcCHhhhhCCHH
Confidence 568888999999999999999999999999999999999976 67899999999999999999999999999 5899
Q ss_pred hhcccccccc
Q psy18202 80 AIIFLTAKLA 89 (357)
Q Consensus 80 ~~~FL~~~~~ 89 (357)
|..||+.++|
T Consensus 107 ~~~FL~~~~~ 116 (116)
T cd07295 107 LAAFLQDPKF 116 (116)
T ss_pred HHHhcCCCCC
Confidence 9999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer. |
| >cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-24 Score=172.96 Aligned_cols=86 Identities=35% Similarity=0.615 Sum_probs=78.0
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|+..++.|+||||||+|||+.|... ||++|||||+|..+... .++++++||++|+++|+.||++|++||.|+
T Consensus 31 ~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP~K~~~~~~~~~~~~~~~~~~fie~Rr~~L~~fL~~i~~hp~l~ 109 (123)
T cd06894 31 PVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLPGKALKRQLPFRGDDGIFEEEFIEERRKGLETFINKVAGHPLAQ 109 (123)
T ss_pred cccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCCCCceecccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhc
Confidence 567888999999999999999999866 99999999999986321 267899999999999999999999999999
Q ss_pred CChhhhcccccc
Q psy18202 76 VNSHAIIFLTAK 87 (357)
Q Consensus 76 ~~~~~~~FL~~~ 87 (357)
+|+.|+.||+.+
T Consensus 110 ~s~~~~~FL~~~ 121 (123)
T cd06894 110 NEKCLHMFLQEE 121 (123)
T ss_pred cCCHHHHhcCCC
Confidence 999999999976
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the |
| >cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-24 Score=172.17 Aligned_cols=85 Identities=34% Similarity=0.604 Sum_probs=78.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|....|.|+|||+||.|||+.|...|||++|||||+|..+.+. .+++++||++||++|+.||++|+.||.|++|+.|
T Consensus 35 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~ 113 (120)
T cd06865 35 PSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRPDKSVVESQ-VMQSAEFIEQRRVALEKYLNRLAAHPVIGLSDEL 113 (120)
T ss_pred CCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCcCCcccccc-ccCCHHHHHHHHHHHHHHHHHHHcCceeecCcHH
Confidence 568889999999999999999999999999999999999987321 2469999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||+.
T Consensus 114 ~~FL~~ 119 (120)
T cd06865 114 RVFLTL 119 (120)
T ss_pred HHhccC
Confidence 999986
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu |
| >cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=171.49 Aligned_cols=87 Identities=46% Similarity=0.786 Sum_probs=79.1
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch-hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE-HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~-~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|+...|.|+|||+||.|||+.|...||+++|||||+|..+.. ..++++++||++|+++|+.||++|+.||.|+.|+.
T Consensus 31 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~ 110 (118)
T cd06863 31 PSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLPDKHRLEYITGDRFSPEFITRRAQSLQRFLRRISLHPVLSQSKI 110 (118)
T ss_pred CCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCCCccccccccccCCCHHHHHHHHHHHHHHHHHHhcCcccccCcH
Confidence 56788899999999999999999999999999999999997621 12568999999999999999999999999999999
Q ss_pred hhcccccc
Q psy18202 80 AIIFLTAK 87 (357)
Q Consensus 80 ~~~FL~~~ 87 (357)
|+.||++.
T Consensus 111 l~~FL~s~ 118 (118)
T cd06863 111 LHQFLESS 118 (118)
T ss_pred HHhhcCCC
Confidence 99999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. |
| >cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4 | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-24 Score=169.79 Aligned_cols=86 Identities=35% Similarity=0.576 Sum_probs=77.4
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch----hhhcCCHHHHHHHHHHHHHHHHHHHcCccccCC
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE----HLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~----~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~ 77 (357)
.|....|.|+|||+||+|||+.|...||++++||||+|..+.. ..++++++||++||++|+.||++|++||+|+.|
T Consensus 40 ~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s 119 (129)
T cd06864 40 GLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLPEKRAMFMWQKLSSDTFDPDFVERRRAGLENFLLRVAGHPELCQD 119 (129)
T ss_pred ccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCCCcceecccccccccCCCHHHHHHHHHHHHHHHHHHHcChhhhcC
Confidence 3567889999999999999999999999999999999997421 125789999999999999999999999999999
Q ss_pred hhhhcccccc
Q psy18202 78 SHAIIFLTAK 87 (357)
Q Consensus 78 ~~~~~FL~~~ 87 (357)
++|+.||+.+
T Consensus 120 ~~l~~FL~~~ 129 (129)
T cd06864 120 KIFLEFLTHE 129 (129)
T ss_pred cHHHHhcCCC
Confidence 9999999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of |
| >cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1 | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-23 Score=167.43 Aligned_cols=86 Identities=34% Similarity=0.513 Sum_probs=76.6
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccch------hhhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLE------HLNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~------~~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|+.+.|.|.||||||+|||+.|...|| |+++||+|+|..+.. ..++++++||++||++|+.||++|++||
T Consensus 30 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P~K~~~~~~~~~~~~~~~~~~~fie~Rr~~Le~FL~~l~~~p 109 (124)
T cd07281 30 LMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLERRRAALERYLQRIVSHP 109 (124)
T ss_pred CccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCCCccccccchhhccccccccHHHHHHHHHHHHHHHHHHhcCc
Confidence 56888999999999999999999999986 789999999987521 1135689999999999999999999999
Q ss_pred cccCChhhhccccc
Q psy18202 73 VLSVNSHAIIFLTA 86 (357)
Q Consensus 73 ~L~~~~~~~~FL~~ 86 (357)
+|++|+.|+.||+.
T Consensus 110 ~l~~s~~~~~FL~~ 123 (124)
T cd07281 110 SLLQDPDVREFLEK 123 (124)
T ss_pred ccccChHHHHHhCC
Confidence 99999999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval |
| >cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=162.79 Aligned_cols=82 Identities=35% Similarity=0.601 Sum_probs=76.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHHHHcCccccCChh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRRVTSHPVLSVNSH 79 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~i~~hp~L~~~~~ 79 (357)
|.|....+.|+|||+||.|||..|...+|++.+||||+|..+ ++++ ++||++||++|+.||++|+.||.|..++.
T Consensus 30 ~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~----~~~~~~~fie~Rr~~L~~fL~~i~~~p~l~~s~~ 105 (113)
T cd06898 30 MCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLPPKNLF----GRFNNEGFIEERQQGLQDFLEKVLQTPLLLSDSR 105 (113)
T ss_pred CccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCCCCccc----cCCCCHHHHHHHHHHHHHHHHHHHcChhhccChH
Confidence 356677889999999999999999999999999999999987 5566 99999999999999999999999999999
Q ss_pred hhccccc
Q psy18202 80 AIIFLTA 86 (357)
Q Consensus 80 ~~~FL~~ 86 (357)
|+.||+.
T Consensus 106 l~~FL~~ 112 (113)
T cd06898 106 LHLFLQT 112 (113)
T ss_pred HHHhccC
Confidence 9999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells. |
| >cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-23 Score=159.65 Aligned_cols=77 Identities=40% Similarity=0.678 Sum_probs=74.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
.++.|.||||||.|||+.|...||++++||||+|..+ ++++++|+++|+++|+.||++|+.||.|++|+.|+.||+
T Consensus 28 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~l~~FL~ 103 (105)
T cd06866 28 FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALPPKRIG----GSADREFLEARRRGLSRFLNLVARHPVLSEDELVRTFLT 103 (105)
T ss_pred CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcChhhccChHHHhhcC
Confidence 5789999999999999999999999999999999987 578999999999999999999999999999999999998
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 104 ~ 104 (105)
T cd06866 104 E 104 (105)
T ss_pred C
Confidence 6
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. |
| >cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-20 Score=160.69 Aligned_cols=194 Identities=13% Similarity=0.190 Sum_probs=171.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLI 203 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~ 203 (357)
|....-+.+||..++.++..++..+..+++++.+|+....+||.++..++.+|.. |+.+|..+++++..+.+..+. .+
T Consensus 3 ~~~~k~i~~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~-qv 81 (211)
T cd07598 3 DNQTKFIQERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQA-EV 81 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3445567899999999999999999999999999999999999999999999965 999999999999999988777 67
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 204 EPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 204 ~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
+.+..+|.+||++|.+.|.++++.++. |..+...+-+++.+++++... ++
T Consensus 82 ~~l~~~v~epLk~Y~~l~k~~k~~~K~-------~~~ar~~~~~~~~~leklk~~----~~------------------- 131 (211)
T cd07598 82 ERLEAKVVQPLALYGTICKHARDDLKN-------TFTARNKELKQLKQLEKLRQK----NP------------------- 131 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc----CC-------------------
Confidence 777789999999999999999999942 667777777888888888643 11
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+++. +|.++|.++..+..+++.++..|.+|+.+|+..|..||+.+|.+|+..++.+|.+.+++|+.
T Consensus 132 -~d~~-----~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe~~k~~d~K~~l~~fv~~~m~~~~kale~~~~ 197 (211)
T cd07598 132 -SDRQ-----IISQAESELQKASVDANRSTKELEEQMDNFEKQKIRDIKTIFSDFVLIEMLFHAKALEVYTA 197 (211)
T ss_pred -chhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 67788999999999999999999999999999999999999999999999999999999964
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15 | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=162.14 Aligned_cols=80 Identities=24% Similarity=0.348 Sum_probs=74.1
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCC-----CCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCC
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHI-----IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVN 77 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~-----iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~ 77 (357)
++..++.|+||||||.|||+.|...|++.+ +||+|+|..+ ++|+++||++||.+|++||++|++||.|++|
T Consensus 33 ~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P~K~~~----g~f~~~fIeeRR~~Le~fL~~i~~~p~l~~s 108 (118)
T cd07288 33 EDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFPRAQVF----GRFEAAVIEERRNAAEAMLLFTVNIPALYNS 108 (118)
T ss_pred ccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCCCceee----ccCCHHHHHHHHHHHHHHHHHHhCChhhcCC
Confidence 445689999999999999999999887654 9999999987 7899999999999999999999999999999
Q ss_pred hhhhccccc
Q psy18202 78 SHAIIFLTA 86 (357)
Q Consensus 78 ~~~~~FL~~ 86 (357)
++|+.||+.
T Consensus 109 ~~~~~FL~~ 117 (118)
T cd07288 109 PQLKEFFRD 117 (118)
T ss_pred hHHHHHHhc
Confidence 999999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t |
| >cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42 | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=161.99 Aligned_cols=81 Identities=36% Similarity=0.600 Sum_probs=74.1
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
.|.|.||||||.|||+.|...||++++||||+|..+... .++++++||++||++|+.||++|+.||+|+.|+.|+
T Consensus 27 ~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 106 (112)
T cd06867 27 GSEVKRRYSEFESLRKNLTRLYPTLIIPPIPEKHSLKDYAKKPSKAKNDAKIIERRKRMLQRFLNRCLQHPILRNDIVFQ 106 (112)
T ss_pred eEEEEeccHHHHHHHHHHHHHCcCCCcCCCCCcchhhhhccccccccCcHHHHHHHHHHHHHHHHHHhcChhhccCcHHH
Confidence 489999999999999999999999999999999976432 135799999999999999999999999999999999
Q ss_pred cccccc
Q psy18202 82 IFLTAK 87 (357)
Q Consensus 82 ~FL~~~ 87 (357)
.||+++
T Consensus 107 ~FL~~~ 112 (112)
T cd06867 107 KFLDPN 112 (112)
T ss_pred HhcCCC
Confidence 999874
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back |
| >cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18 | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.9e-23 Score=163.11 Aligned_cols=79 Identities=41% Similarity=0.665 Sum_probs=75.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
..+.|.||||||.|||+.|...||+++|||||+|..+ ++++++||++|+++|+.||++|+.||.|++|+.|+.||+
T Consensus 30 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~----~~~~~~fie~Rr~~Le~fL~~I~~~p~l~~s~~~~~FL~ 105 (125)
T cd06862 30 TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLPEKQVT----GRFEEDFIEKRRERLELWMNRLARHPVLSQSEVFRHFLT 105 (125)
T ss_pred CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCCCCccc----cCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHcC
Confidence 4789999999999999999999999999999999986 678999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
.++
T Consensus 106 ~~~ 108 (125)
T cd06862 106 CTD 108 (125)
T ss_pred Ccc
Confidence 875
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca |
| >cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3 | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-23 Score=161.68 Aligned_cols=74 Identities=30% Similarity=0.487 Sum_probs=70.8
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccccc
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
+|.|.||||||.|||+.|...||++++||||+|..+ + +++||++||++|+.||++|++||.|++|+.|+.||..
T Consensus 46 ~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP~K~~~----~--~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~~ 119 (120)
T cd06868 46 QFMVSKKYSEFEELYKKLSEKYPGTILPPLPRKALF----V--SESDIRERRAAFNDFMRFISKDEKLANCPELLEFLGV 119 (120)
T ss_pred eEEEeCCcHHHHHHHHHHHHHCCCCCCCCCCCCccc----C--CHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHhcC
Confidence 689999999999999999999999999999999987 3 7999999999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-22 Score=158.38 Aligned_cols=83 Identities=45% Similarity=0.865 Sum_probs=76.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCH--HHHHHHHHHHHHHHHHHHcCccccCCh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSK--EFILCRMKLLDQFLRRVTSHPVLSVNS 78 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~--~fie~R~~~L~~fL~~i~~hp~L~~~~ 78 (357)
|.|....|.|+|||+||.|||+.|...+|+.++||||+|..+ ++++. +||++|+.+|+.||++|+.||.|+.|+
T Consensus 30 ~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP~k~~~----~~~~~~~~~ie~Rr~~L~~fL~~i~~~p~l~~s~ 105 (114)
T cd06859 30 PDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPPEKQAV----GRFKVKFEFIEKRRAALERFLRRIAAHPVLRKDP 105 (114)
T ss_pred CCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCCCCccc----CccCccHHHHHHHHHHHHHHHHHHhcChhhccCc
Confidence 457788999999999999999999999999999999999987 55554 499999999999999999999999999
Q ss_pred hhhcccccc
Q psy18202 79 HAIIFLTAK 87 (357)
Q Consensus 79 ~~~~FL~~~ 87 (357)
.|+.||+++
T Consensus 106 ~~~~Fl~~~ 114 (114)
T cd06859 106 DFRLFLESD 114 (114)
T ss_pred HHHhhcCCC
Confidence 999999764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex, |
| >cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14 | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-22 Score=155.97 Aligned_cols=81 Identities=27% Similarity=0.418 Sum_probs=76.1
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
.....|.|.||||||.|||..|...||++.+||||+|..+ ++++++||++||.+||.||+.|+.||.|+.|+.|+.
T Consensus 39 ~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~s~~~~~ 114 (119)
T cd06877 39 HEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLPSRRIF----GPKSYEFLESKREIFEEFLQKLLQKPELRGSELLYD 114 (119)
T ss_pred CCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCcCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCcccccCHHHHH
Confidence 4567899999999999999999999999999999999987 668999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 83 FLTAK 87 (357)
Q Consensus 83 FL~~~ 87 (357)
||+.+
T Consensus 115 FL~~~ 119 (119)
T cd06877 115 FLSPN 119 (119)
T ss_pred hCCCC
Confidence 99864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N |
| >cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-22 Score=155.67 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=71.9
Q ss_pred CcceeecchhhHHHHHHHHHHhCC-----CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLP-----SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p-----~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
..++|+||||||.|||+.|...|| +.++||+|+|..+ ++++++||++||++|+.||++|++||.|++|++|
T Consensus 36 ~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p~k~~~----g~~d~~fIe~RR~~Le~fL~~i~~~p~l~~s~~~ 111 (118)
T cd07287 36 QEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFAKAKVF----GRFDESVIEERRQCAEDLLQFSANIPALYNSSQL 111 (118)
T ss_pred eeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCCCceee----cCCCHHHHHHHHHHHHHHHHHHhcCccccCChHH
Confidence 579999999999999999999887 4578999988887 7899999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||..
T Consensus 112 ~~Fl~~ 117 (118)
T cd07287 112 EDFFKG 117 (118)
T ss_pred HHHhcC
Confidence 999975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma |
| >cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-21 Score=154.28 Aligned_cols=83 Identities=25% Similarity=0.374 Sum_probs=77.6
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCC-CCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~-iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
.|+.+.|+|.||||||.|||..|...+++++ .||+|+|..+ ++++++||++|+.+|+.||++|++||.|+.++.|
T Consensus 30 ~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~ 105 (114)
T cd07300 30 SFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFPKKKLT----GNFSEEIIAERRVALRDYLTLLYSLRFVRRSQAF 105 (114)
T ss_pred CccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHH
Confidence 3778899999999999999999999999876 7899999987 7899999999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||+.++
T Consensus 106 ~~FL~~~~ 113 (114)
T cd07300 106 QDFLTHPE 113 (114)
T ss_pred HHHhCCcc
Confidence 99999873
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom |
| >cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=154.38 Aligned_cols=79 Identities=28% Similarity=0.370 Sum_probs=74.5
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.+||+.|...+|++.+||+|+|..+ +.++++|+++||++||.||++|++||.+++++.|+.|
T Consensus 59 ~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplPpK~~l----~~~~~~fiEeRR~gLE~fLq~Ll~~p~l~~s~~v~~F 134 (138)
T cd06879 59 ITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAPPKGLL----RMKNRALLEERRHSLEEWMGKLLSDIDLSRSVPVASF 134 (138)
T ss_pred cceeeeeecCchHHHHHHHHHHHHCCCCcCCCCCCcccc----cCCCHHHHHHHHHHHHHHHHHHHcCccccCCHHHHHH
Confidence 345889999999999999999999999999999999987 5789999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
|+.
T Consensus 135 Lel 137 (138)
T cd06879 135 LEL 137 (138)
T ss_pred hCC
Confidence 975
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-21 Score=154.68 Aligned_cols=82 Identities=28% Similarity=0.452 Sum_probs=74.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC---CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH---IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~---~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
.++|.|+||||||.|||+.|...||+. +|||||+|..+.....+++++||++|+++|+.||++|+.||.|+.|+.|+
T Consensus 36 ~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP~K~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 115 (120)
T cd07280 36 GSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLPPKVPWYDSRVNLNKAWLEKRRRGLQYFLNCVLLNPVFGGSPVVK 115 (120)
T ss_pred CCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCCCCcccccccccCCHHHHHHHHHHHHHHHHHHhCCHhhccChHHH
Confidence 478999999999999999999999987 89999999987322237899999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||++
T Consensus 116 ~FL~~ 120 (120)
T cd07280 116 EFLLP 120 (120)
T ss_pred HhhCC
Confidence 99974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway. |
| >cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.7e-21 Score=152.51 Aligned_cols=81 Identities=27% Similarity=0.420 Sum_probs=74.3
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCC-CCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHII-PPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~i-PplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
+....|.|+||||||.|||+.|...||+.++ ||+|+|..+ ++++++||++|+.+|+.||++|++||.|++|+.|+
T Consensus 31 ~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~ 106 (112)
T cd07279 31 PDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFPRKVLM----GNFSSELIAERSRAFEQFLGHILSIPNLRDSKAFL 106 (112)
T ss_pred CCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCCCCeec----ccCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHH
Confidence 3456799999999999999999999999874 789999887 67899999999999999999999999999999999
Q ss_pred cccccc
Q psy18202 82 IFLTAK 87 (357)
Q Consensus 82 ~FL~~~ 87 (357)
.||+.+
T Consensus 107 ~FL~~~ 112 (112)
T cd07279 107 DFLQGP 112 (112)
T ss_pred HHhCCC
Confidence 999863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal |
| >cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-21 Score=151.49 Aligned_cols=81 Identities=25% Similarity=0.439 Sum_probs=74.9
Q ss_pred CCCCCcceeecchhhHHHHHHHHHHhCCCCCC-CCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHII-PPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 2 ~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~i-PplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
.|....|.|.||||||.|||+.|...||+.+. ||+|+|..+ ++++++||++|+++|+.||++|++||.|+.++.|
T Consensus 30 ~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P~K~~~----~~~~~~~ie~Rr~~Le~fL~~i~~~p~l~~s~~~ 105 (112)
T cd07301 30 QYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFPRKRLR----KNFTAETIAKRSRAFEQFLCHLHSLPELRASPAF 105 (112)
T ss_pred CCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhcCHHHhcChHH
Confidence 46778899999999999999999999998765 699999987 6799999999999999999999999999999999
Q ss_pred hccccc
Q psy18202 81 IIFLTA 86 (357)
Q Consensus 81 ~~FL~~ 86 (357)
+.||.-
T Consensus 106 ~~FL~l 111 (112)
T cd07301 106 LEFFYL 111 (112)
T ss_pred HHHhCC
Confidence 999964
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development. |
| >cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.7e-21 Score=151.98 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=71.7
Q ss_pred CcceeecchhhHHHHHHHHHHhCCC----CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPS----HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAI 81 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~----~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~ 81 (357)
+.+.|+||||||.|||+.|...||+ ..+||+|+|..+ ++++++||++|+.+|+.||++|++||.|+.++.|+
T Consensus 36 ~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP~K~~~----g~~~~~~IeeRr~~Le~fL~~i~~~p~l~~s~~~~ 111 (117)
T cd06881 36 SEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFPKGKYF----GRFDAAVIEERRQAILELLDFVGNHPALYQSSAFQ 111 (117)
T ss_pred ceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHH
Confidence 5899999999999999999999974 457999999987 78999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||+-
T Consensus 112 ~Fl~~ 116 (117)
T cd06881 112 QFFEE 116 (117)
T ss_pred HHhcc
Confidence 99973
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont |
| >KOG2527|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-21 Score=149.47 Aligned_cols=85 Identities=38% Similarity=0.651 Sum_probs=76.9
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|+..+.+|+||||||+|||.+|...-.-++|||||.|..+.+. + ..+|||+||++|+.||+.|+.||.+.++..+
T Consensus 47 p~F~~k~S~VRRRYsdFewlr~~Ler~s~kvvvP~LPgK~~~~~~--~-fre~IEeRrqgLe~fl~kVaghpL~q~~~~L 123 (144)
T KOG2527|consen 47 PSFKKKESCVRRRYSDFEWLRKRLERESGKVVVPELPGKALFRQL--P-FREFIEERRQGLEVFLRKVAGHPLLQNERCL 123 (144)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHhcC--c-hHHHHHHHHHHHHHHHHHHhCchhhhccHHH
Confidence 678999999999999999999999999988999999999987432 1 2299999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||.+.-
T Consensus 124 h~Flq~~~ 131 (144)
T KOG2527|consen 124 HLFLQSEL 131 (144)
T ss_pred HHHHHhhh
Confidence 99998873
|
|
| >cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16 | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-20 Score=146.07 Aligned_cols=78 Identities=26% Similarity=0.413 Sum_probs=72.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
+..|.|.||||||.|||..|...+|+ ++||||+|..+. ++++++||++|+.+|+.||++|++||.|++++.|+.||
T Consensus 32 ~~~~~v~RRYsdF~~L~~~L~~~~~~-~~~~lP~K~~~~---~~~~~~fie~Rr~~Lq~fL~~ll~~~~l~~s~~~~~FL 107 (110)
T cd07276 32 GDSWFVFRRYTDFVRLNDKLKQMFPG-FRLSLPPKRWFK---DNFDPDFLEERQLGLQAFVNNIMAHKDIAKCKLVREFF 107 (110)
T ss_pred CCEEEEEEehHHHHHHHHHHHHHCCC-CCCCCCCcceec---ccCCHHHHHHHHHHHHHHHHHHhcCHhhhcChHHHHHh
Confidence 36899999999999999999999998 789999999762 35899999999999999999999999999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
..
T Consensus 108 ~~ 109 (110)
T cd07276 108 CL 109 (110)
T ss_pred cc
Confidence 75
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking. |
| >cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8 | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.5e-17 Score=149.07 Aligned_cols=212 Identities=13% Similarity=0.152 Sum_probs=184.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch-------------hHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP-------------QLSSVIRQV 187 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~-------------~l~~~l~~~ 187 (357)
+.+....|...+.+|..+...+.++...+++++++.+.++.++..||..++.|+..+. .+..+|..+
T Consensus 17 p~~~~~~~~~~r~~I~~l~~~~~~l~~l~er~~kR~~~~A~d~~~f~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~ 96 (246)
T cd07597 17 PPDFQEQWANSRERIRRLLESWTKLRVLAERYEKRSQQQAADRAEFARLLNSLGELTARLYPWAGDSDTWGDINEGLSSL 96 (246)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccCCCccHHHHHHHHHHH
Confidence 4556678999999999999999999999999999999999999999999999998653 388999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy18202 188 SKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD-VIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPT 266 (357)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~-~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~ 266 (357)
|.++..++....+ .+..+...+.++|+.|..++.|+|++|.||+ ....++..+.+........+..+....
T Consensus 97 s~~~~~~s~~~~~-~a~~~~~~vlE~Lk~~~d~l~S~r~lf~R~~k~~~~~i~~l~~ri~~~~~kl~~l~~~~------- 168 (246)
T cd07597 97 SKHFQLLSDLSED-EARAEEDGVLEKLKLQLDLLVSLRDLFERHEKLSLNNIQRLLKRIELNKKKLESLRAKP------- 168 (246)
T ss_pred HHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCC-------
Confidence 9999999999887 7777788999999999999999999999999 555577777777766666666655330
Q ss_pred CCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 267 SSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
......+++++..|..-++.+.+...+...|..|++.|+..|+.... .+..++.+|+..|+.+|
T Consensus 169 ---------------~~~~~e~ekl~~~i~~d~~~i~~q~~R~~fi~~Cv~~E~~~fq~~~~-~~~~~l~~~~~~q~~~~ 232 (246)
T cd07597 169 ---------------DVKGAEVDKLEASIIKDKESIANQLNRSWFIRECILEETQLFQETQF-LLTSILQEFVKDEIQYH 232 (246)
T ss_pred ---------------CCchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 01235788899999999999998888899999999999999999876 99999999999999999
Q ss_pred HHHHhccccc
Q psy18202 347 QQRSDRGNCN 356 (357)
Q Consensus 347 ~~~~~~W~~~ 356 (357)
.++.++|...
T Consensus 233 ~~l~~~W~~L 242 (246)
T cd07597 233 SELANVWERL 242 (246)
T ss_pred HHHHHHHHHh
Confidence 9999999753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-20 Score=148.51 Aligned_cols=86 Identities=28% Similarity=0.346 Sum_probs=69.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCCh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNS 78 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~ 78 (357)
|.|+..+|.|.||||||.|||+.|....+ +++.+++|+|....-..++++++||++||.+|+.||++|++||.|+.|+
T Consensus 44 ~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P~k~~p~lp~g~~d~~fie~Rr~~Le~fL~~l~~~p~l~~s~ 123 (132)
T cd06893 44 SEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGPPKRLFDLPFGNMDKDKIEARRGLLETFLRQLCSIPEISNSE 123 (132)
T ss_pred cccccCeEEEECchHHHHHHHHHHHHccCcccccccCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCHhhhcCH
Confidence 57888999999999999999999997532 2333445555431000267899999999999999999999999999999
Q ss_pred hhhccccc
Q psy18202 79 HAIIFLTA 86 (357)
Q Consensus 79 ~~~~FL~~ 86 (357)
+|+.||.-
T Consensus 124 ~l~~FL~~ 131 (132)
T cd06893 124 EVQEFLAY 131 (132)
T ss_pred HHHHHHcc
Confidence 99999964
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found |
| >cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-20 Score=144.35 Aligned_cols=78 Identities=28% Similarity=0.473 Sum_probs=72.3
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhh-cCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLN-RYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~-~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
...|.|.||||||.|||+.|...||+..+ |+|+|..+ + +++++||++|+.+|+.||+.|++||.|.+++.|+.|
T Consensus 31 ~~~~~v~RRYseF~~L~~~L~~~~~~~~~-~lP~K~~~----~~~~~~~~ie~Rr~~Le~fL~~ll~~p~l~~s~~~~~F 105 (109)
T cd06870 31 RSSWFVFRRYAEFDKLYESLKKQFPASNL-KIPGKRLF----GNNFDPDFIKQRRAGLDEFIQRLVSDPKLLNHPDVRAF 105 (109)
T ss_pred CeEEEEEeehHHHHHHHHHHHHHCcccCc-CCCCCccc----ccCCCHHHHHHHHHHHHHHHHHHhCCHhhhcChHHHHH
Confidence 56899999999999999999999999854 79999987 5 789999999999999999999999999999999999
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
|+.+
T Consensus 106 L~~~ 109 (109)
T cd06870 106 LQMD 109 (109)
T ss_pred hCcC
Confidence 9753
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity. |
| >cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27 | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.1e-20 Score=141.98 Aligned_cols=76 Identities=29% Similarity=0.466 Sum_probs=71.5
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.|.||||||.+||+.|...+|++.+||+|+|..+ .++++|+++||++|+.||+.|++||+|+.|+.|+.||+
T Consensus 30 ~~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP~K~~~-----~~~~~~ie~Rr~~Le~fL~~l~~~p~l~~s~~~~~FL~ 104 (106)
T cd06886 30 GRQLCSRRYREFANLHQNLKKEFPDFQFPKLPGKWPF-----SLSEQQLDARRRGLEQYLEKVCSIRVIGESDIMQDFLS 104 (106)
T ss_pred CCEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCCcC-----CCCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHhc
Confidence 4689999999999999999999999999999999986 26889999999999999999999999999999999997
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 105 ~ 105 (106)
T cd06886 105 D 105 (106)
T ss_pred c
Confidence 5
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface |
| >cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=142.17 Aligned_cols=81 Identities=27% Similarity=0.342 Sum_probs=74.9
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc--cccCChhhh
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP--VLSVNSHAI 81 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp--~L~~~~~~~ 81 (357)
....|.|.||||||.+||+.|...+|+..+||+|+|..+.. ++++++||++|+++|+.||+.|+.|| .+++|+.|+
T Consensus 25 ~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~~~--~~~~~~~ie~Rr~~Le~yL~~l~~~~~~~l~~s~~~~ 102 (108)
T cd06897 25 PLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLPPKSWFLS--TSSNPKLVEERRVGLEAFLRALLNDEDSRWRNSPAVK 102 (108)
T ss_pred CCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCCCcCEecc--cCCCHHHHHHHHHHHHHHHHHHHcCCccchhcCHHHH
Confidence 35789999999999999999999999999999999998721 37899999999999999999999999 999999999
Q ss_pred ccccc
Q psy18202 82 IFLTA 86 (357)
Q Consensus 82 ~FL~~ 86 (357)
.||+.
T Consensus 103 ~FL~~ 107 (108)
T cd06897 103 EFLNL 107 (108)
T ss_pred HHhCC
Confidence 99975
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. |
| >cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.2e-19 Score=139.80 Aligned_cols=80 Identities=30% Similarity=0.422 Sum_probs=71.5
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
|....|.|.||||||.+||+.|... +. .||+|+|..+ ++++++||++|+.+|+.||++|+.||.++.++.|..
T Consensus 33 ~~~~~w~V~RRYsdF~~Lh~~L~~~--~~-~~plP~K~~~----g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~ 105 (120)
T cd06871 33 SPENSWQVIRRYNDFDLLNASLQIS--GI-SLPLPPKKLI----GNMDREFIAERQQGLQNYLNVILMNPILASCLPVKK 105 (120)
T ss_pred cCCceeEEEeeHHHHHHHHHHHHHc--CC-CCCCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHcChhhccCHHHHH
Confidence 5567899999999999999999863 33 3579999987 678999999999999999999999999999999999
Q ss_pred ccccccc
Q psy18202 83 FLTAKLA 89 (357)
Q Consensus 83 FL~~~~~ 89 (357)
||+.+++
T Consensus 106 FL~~~~~ 112 (120)
T cd06871 106 FLDPNNY 112 (120)
T ss_pred hcCcccC
Confidence 9997754
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes. |
| >cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-19 Score=139.66 Aligned_cols=73 Identities=32% Similarity=0.397 Sum_probs=68.1
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
.+.|.|.|||+||.|||..|...||++.+||||+|.. .++|+|+.+|+.||++|+.||.|++|+.|..||
T Consensus 47 ~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP~K~~----------~~~E~Rr~~Le~yL~~Ll~~p~l~~s~~~~~FL 116 (119)
T cd06869 47 YRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLPHKDK----------LPREKLRLSLRQYLRSLLKDPEVAHSSILQEFL 116 (119)
T ss_pred CCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCcCCch----------hHHHHHHHHHHHHHHHHhcChhhhcChHHHHhh
Confidence 3589999999999999999999999999999999986 367899999999999999999999999999999
Q ss_pred ccc
Q psy18202 85 TAK 87 (357)
Q Consensus 85 ~~~ 87 (357)
.++
T Consensus 117 ~~~ 119 (119)
T cd06869 117 TSD 119 (119)
T ss_pred CCC
Confidence 864
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. |
| >cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.9e-19 Score=136.89 Aligned_cols=77 Identities=31% Similarity=0.477 Sum_probs=69.7
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.+||+.|.. +|+. .||+|+|..+. ++++++||++|+.+|+.||+.|++||.+..|+.|+.||
T Consensus 30 ~~~w~v~RRYsdF~~L~~~L~~-~~~~-~~~lP~K~~~~---~~~~~~fie~Rr~~Le~yL~~l~~~p~i~~s~~~~~FL 104 (107)
T cd06872 30 NETWVVKRRFRNFETLHRRLKE-VPKY-NLELPPKRFLS---SSLDGAFIEERCKLLDKYLKDLLVIEKVAESHEVWSFL 104 (107)
T ss_pred CceEEEEehHHHHHHHHHHHHh-ccCC-CCCCCCccccC---CCCCHHHHHHHHHHHHHHHHHHhcChhhhcCHHHHHHh
Confidence 4689999999999999999986 6765 77999999873 46799999999999999999999999999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
..
T Consensus 105 ~~ 106 (107)
T cd06872 105 SA 106 (107)
T ss_pred cc
Confidence 64
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom |
| >cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=137.99 Aligned_cols=79 Identities=32% Similarity=0.503 Sum_probs=72.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCCh----h
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNS----H 79 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~----~ 79 (357)
....|.|.||||||.+||+.|...+|+..+||+|+|..+ ++++++||++|+.+|+.||+.|+++|.|++++ .
T Consensus 37 ~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP~K~~~----~~~~~~~ie~Rr~~Le~fL~~ll~~~~l~~~~~~~~~ 112 (120)
T cd06873 37 QEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFPGKKTF----NNLDRAFLEKRRKMLNQYLQSLLNPEVLDANPGLQEI 112 (120)
T ss_pred CccceEEEeehHHHHHHHHHHHHHCcCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhccCHHHHHH
Confidence 456899999999999999999999999999999999987 67899999999999999999999999999995 6
Q ss_pred hhccccc
Q psy18202 80 AIIFLTA 86 (357)
Q Consensus 80 ~~~FL~~ 86 (357)
+..||++
T Consensus 113 l~~FL~~ 119 (120)
T cd06873 113 VLDFLEP 119 (120)
T ss_pred HHHHcCC
Confidence 6777764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug |
| >cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31 | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-18 Score=134.60 Aligned_cols=76 Identities=21% Similarity=0.308 Sum_probs=71.0
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.|.||||||.+||..|...+|++.+||+|+|..+ +++++||++||.+|+.||+.|+.||.|+.|+.|+.||.
T Consensus 27 ~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP~K~~~-----~~~~~~ie~Rr~~Le~yL~~l~~~~~l~~s~~~~~FL~ 101 (104)
T cd06885 27 GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFPPKKLL-----PLTPAQLEERRLQLEKYLQAVVQDPRIANSDIFNSFLL 101 (104)
T ss_pred CcEEEEechHHHHHHHHHHHHHcCCCCCCCCCCCccc-----cCCHHHHHHHHHHHHHHHHHHhcChhhccCHHHHHHHH
Confidence 4678999999999999999999999999999999986 25789999999999999999999999999999999996
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 102 ~ 102 (104)
T cd06885 102 N 102 (104)
T ss_pred h
Confidence 4
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me |
| >cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=139.32 Aligned_cols=78 Identities=23% Similarity=0.407 Sum_probs=72.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC--CHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY--SKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~--~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
...|.|.|||+||.+||+.|...+|+..+||+|+|..+ +.. +++|+++|+.+|+.||+.|+.+|.+++++.|..
T Consensus 54 ~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P~K~~~----~~~~~~~~~ie~Rr~~Le~yL~~Ll~~~~l~~s~~l~~ 129 (133)
T cd06876 54 SSGWVVARRYSEFLELHKYLKKRYPGVLKLDFPQKRKI----SLKYSKTLLVEERRKALEKYLQELLKIPEVCEDEEFRK 129 (133)
T ss_pred cccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCCccccc----cCccCCHHHHHHHHHHHHHHHHHHHcCccccCChHHHH
Confidence 35799999999999999999999999999999999987 333 799999999999999999999999999999999
Q ss_pred cccc
Q psy18202 83 FLTA 86 (357)
Q Consensus 83 FL~~ 86 (357)
||+.
T Consensus 130 FLs~ 133 (133)
T cd06876 130 FLSQ 133 (133)
T ss_pred hhcC
Confidence 9963
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul |
| >cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=136.14 Aligned_cols=83 Identities=29% Similarity=0.325 Sum_probs=76.6
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.+||..|...+ ++..|++|+|..+ ++++++||++|+.+|+.||+.|++||.+..+++|..|
T Consensus 27 ~~~~w~V~RRYseF~~L~~~L~~~~-~~~~~~~P~Kk~~----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~~s~~l~~F 101 (116)
T cd06875 27 GSVEWTVKHRYSDFAELHDKLVAEH-KVDKDLLPPKKLI----GNKSPSFVEKRRKELEIYLQTLLSFFQKTMPRELAHF 101 (116)
T ss_pred CCeEEEEEecHHHHHHHHHHHHHHc-CcccCcCCCcccc----CCCCHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHH
Confidence 3568999999999999999999999 6788999999988 6789999999999999999999999999999999999
Q ss_pred ccccccch
Q psy18202 84 LTAKLAEF 91 (357)
Q Consensus 84 L~~~~~~~ 91 (357)
|..++++.
T Consensus 102 L~~~~~~~ 109 (116)
T cd06875 102 LDFHKYEI 109 (116)
T ss_pred hCCCceeE
Confidence 99987653
|
The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a |
| >cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25 | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.1e-18 Score=136.17 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=69.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC--CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH--IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAII 82 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~--~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~ 82 (357)
...|.|.|||+||.+||+.|...||+. +.+|+|+|..+ ++++++|+++||.+|+.||+.|+.+|.|+.++.|..
T Consensus 47 ~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~ppKk~~----~~~~~~fle~Rr~~Le~YLq~ll~~~~l~~s~~l~~ 122 (127)
T cd06878 47 SSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSLSKKWF----KSIDKKFLDKSKNQLQKYLQFILEDETLCQSEALYS 122 (127)
T ss_pred cceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCCCcccc----ccCCHHHHHHHHHHHHHHHHHHhCChhhcCCHHHHH
Confidence 456999999999999999999999975 44555667766 557999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 83 FLTAK 87 (357)
Q Consensus 83 FL~~~ 87 (357)
||+++
T Consensus 123 FLsp~ 127 (127)
T cd06878 123 FLSPS 127 (127)
T ss_pred HcCCC
Confidence 99863
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S |
| >cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-15 Score=128.39 Aligned_cols=183 Identities=13% Similarity=0.254 Sum_probs=145.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKD-YVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAVDTT 194 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~-l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~~~~ 194 (357)
.+...+.+..++..+++.++.+...+...+++... +-.++..+|.+|..||.+ ...|+.++..+|++++.+
T Consensus 2 ve~~~d~f~~f~~~md~svk~l~~~~~~~~kk~~~~~kkeyqk~G~af~~L~~af~~d~~~~~t~Ls~Al~~~g~~~e~I 81 (199)
T cd07626 2 VEQQVDAFKKFVKSMDDSVKNLINIAQEQAKKHQGPYKKEYQKIGQAFTSLGTAFELDETPTSVPLTQAIKHTGQAYEEI 81 (199)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999998888877744 447778888888888732 123999999999999999
Q ss_pred HHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCC
Q psy18202 195 ASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSST 274 (357)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~ 274 (357)
++++.+ +.......|.+.|++|.+.+.++++++..|..+ |.|++... ++... |+
T Consensus 82 g~l~~e-Qa~~D~~~l~E~L~eY~gll~~~pdi~~~~k~a----------l~K~kE~~-r~~~e--gk------------ 135 (199)
T cd07626 82 GELFAE-QPKHDLIPLLDGLHEYKGLLSTFPDIIGVHKGA----------VQKVKECE-RLVDE--GK------------ 135 (199)
T ss_pred HHHHHH-hhHhhHHHHHHHHHHHHhHHHhhhHHHHHHHHH----------HHHHHHHH-HHHHh--cc------------
Confidence 999988 555555699999999999999999999888775 44444432 33221 11
Q ss_pred CcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 275 NSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 275 ~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+ ...+++.++.+++.|+..++.|+.+|+.+|..||+.+|.+|.+.||.+|++...-++
T Consensus 136 -------------~---------~~~e~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe~qI~fyqqI~~kl~ 193 (199)
T cd07626 136 -------------M---------SSAELEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQQQIEFYQKIAAKLE 193 (199)
T ss_pred -------------c---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 112344577899999999999999999999999999999999999999999887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for |
| >smart00312 PX PhoX homologous domain, present in p47phox and p40phox | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=130.68 Aligned_cols=79 Identities=41% Similarity=0.685 Sum_probs=72.1
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccC-Chhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSV-NSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~-~~~~~~FL 84 (357)
..|.|.|||+||.+||+.|...+|+..+||+|+|..+.. .+..+++++++|+.+|+.||+.|+.||.++. |+.|..||
T Consensus 26 ~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP~k~~~~~-~~~~~~~~i~~R~~~L~~yL~~l~~~~~~~~~s~~~~~Fl 104 (105)
T smart00312 26 EEWTVSRRYSDFLELHSKLKKHFPRRILPPLPPKKLFGR-LNNFSEEFIEKRRRGLERYLQSLLNHPELINESEVVLSFL 104 (105)
T ss_pred ceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCCCchhccc-CCcCCHHHHHHHHHHHHHHHHHHHcCHhhhccChHHHHhc
Confidence 579999999999999999999999999999999997621 1356899999999999999999999999999 99999998
Q ss_pred c
Q psy18202 85 T 85 (357)
Q Consensus 85 ~ 85 (357)
+
T Consensus 105 ~ 105 (105)
T smart00312 105 E 105 (105)
T ss_pred C
Confidence 5
|
Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform. |
| >cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-17 Score=133.27 Aligned_cols=82 Identities=26% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
+..|.|.|||+||.+||..|...||. ++||+||+|..+ ++.+ +|+++|+.+|+.||+.|+++|. +.
T Consensus 32 ~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP~k~~~----~~~~-~~~e~Rr~~Le~yl~~Ll~~p~~i~ 106 (123)
T cd06882 32 GSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLPGKIYV----GRKA-EIAERRIPLLNRYMKELLSLPVWVL 106 (123)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCCCCeec----CccH-HHHHHHHHHHHHHHHHHHcCCHHhc
Confidence 45799999999999999999999995 689999999986 4444 9999999999999999999985 99
Q ss_pred CChhhhccccccccch
Q psy18202 76 VNSHAIIFLTAKLAEF 91 (357)
Q Consensus 76 ~~~~~~~FL~~~~~~~ 91 (357)
.|+.|+.||...+.|+
T Consensus 107 ~~~~v~~Fl~~~~~d~ 122 (123)
T cd06882 107 MDEDVRLFFYQTESDS 122 (123)
T ss_pred CCHHHHHHhCCCcccc
Confidence 9999999999876443
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox |
| >cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.5e-17 Score=127.66 Aligned_cols=79 Identities=28% Similarity=0.411 Sum_probs=71.7
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.|||..|...+|+...|++|+|..+ ++++++|+++||.+||.||+.|+.| .+..++.|..|
T Consensus 28 ~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P~Kk~~----g~~~~~~ie~Rr~~Le~yL~~ll~~-~~~~~~~~~~~ 102 (118)
T cd07277 28 RDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFPPKKAI----GNKDAKFVEERRKRLQVYLRRVVNT-LIQTSPELTAC 102 (118)
T ss_pred CCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCCCCCcc----CCCCHHHHHHHHHHHHHHHHHHHHH-HHHhCchhhcC
Confidence 356899999999999999999999999889999999987 6789999999999999999999998 77788888888
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
|+-.
T Consensus 103 ~~~~ 106 (118)
T cd07277 103 PSKE 106 (118)
T ss_pred CCHH
Confidence 8755
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways. |
| >cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=124.95 Aligned_cols=74 Identities=22% Similarity=0.399 Sum_probs=68.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
+..|+|.||||||.+||..|...++ +|++|+|.. ++++++||++|+.+|+.||+.|+.+|. .++.|..||
T Consensus 30 ~~~~~v~RRYseF~~Lh~~L~~~~~---~p~~P~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~~~--~s~~l~~FL 99 (110)
T cd06880 30 GRRHTVEKRYSEFHALHKKLKKSIK---TPDFPPKRV-----RNWNPKVLEQRRQGLEAYLQGLLKINE--LPKQLLDFL 99 (110)
T ss_pred CeEEEEEccHHHHHHHHHHHHHHCC---CCCCCCCCc-----cCCCHHHHHHHHHHHHHHHHHHHcCcc--ccHHHHHHh
Confidence 4579999999999999999999998 899999985 357899999999999999999999999 699999999
Q ss_pred cccc
Q psy18202 85 TAKL 88 (357)
Q Consensus 85 ~~~~ 88 (357)
+.+.
T Consensus 100 ~~~~ 103 (110)
T cd06880 100 GVRH 103 (110)
T ss_pred CCCC
Confidence 9884
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known. |
| >cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-16 Score=122.88 Aligned_cols=77 Identities=40% Similarity=0.621 Sum_probs=72.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
..|.|+|||+||.|||+.|...+|+..+|++|+|..+ +..+.+++++|+..|+.||+.|+.||.+..++.|..||+
T Consensus 30 ~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP~k~~~----~~~~~~~~~~R~~~L~~yl~~l~~~~~~~~~~~~~~Fl~ 105 (106)
T cd06093 30 EEWTVYRRYSDFEELHEKLKKKFPGVILPPLPPKKLF----GNLDPEFIEERRKQLEQYLQSLLNHPELRNSEELKEFLE 105 (106)
T ss_pred CeEEEEeehHHHHHHHHHHHHHCCCCccCCCCCCccc----ccCCHHHHHHHHHHHHHHHHHHhcCcccccChHHHHHhC
Confidence 6799999999999999999999999999999999987 446789999999999999999999999999999999986
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
.
T Consensus 106 ~ 106 (106)
T cd06093 106 L 106 (106)
T ss_pred C
Confidence 3
|
The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting. |
| >cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=122.82 Aligned_cols=78 Identities=24% Similarity=0.360 Sum_probs=70.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL 84 (357)
..|.|.|||+||.+||..|...||++.+|++|+|..+. ...+.+++++|+.+|+.||+.|+++ |.+++|+.|..||
T Consensus 30 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP~k~~~~---~~~~~~~~e~R~~~Le~YL~~Ll~~~~~i~~s~~v~~F~ 106 (109)
T cd06883 30 EPSFVFRTFEEFQELHNKLSLLFPSLKLPSFPARVVLG---RSHIKQVAERRKIELNSYLKSLFNASPEVAESDLVYTFF 106 (109)
T ss_pred CeEEEEecHHHHHHHHHHHHHHCCCCcCCCCCCCcccC---ccchhHHHHHHHHHHHHHHHHHHcCCHHHhcCHHHHHhc
Confidence 45899999999999999999999999999999998762 2345789999999999999999998 5999999999999
Q ss_pred cc
Q psy18202 85 TA 86 (357)
Q Consensus 85 ~~ 86 (357)
.+
T Consensus 107 ~~ 108 (109)
T cd06883 107 HP 108 (109)
T ss_pred CC
Confidence 75
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d |
| >PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ] | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-16 Score=123.13 Aligned_cols=82 Identities=34% Similarity=0.547 Sum_probs=74.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.|||+||.+||..|...+|+..+||+|++..+... +..+.+++++|+..|+.||+.|+.||.+..++.+..||
T Consensus 32 ~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P~~~~~~~~-~~~~~~~~~~R~~~L~~yL~~l~~~~~~~~s~~l~~FL 110 (113)
T PF00787_consen 32 KESWSVYRRYSDFYELHRKLKKRFPSRKLPPFPPKQWFSNS-RNLDPEFIEERRQALEKYLQSLLSHPELRSSEALKEFL 110 (113)
T ss_dssp SSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSSTSSSSSSS-STTSHHHHHHHHHHHHHHHHHHHTSCHHHHSHHHHHHH
T ss_pred CEEEEEEEEHHHHHHHHHHHhhhhcccccccCCcccccccc-ccccHHHHHHHHHHHHHHHHHHHcChhhhCchHHHHhc
Confidence 36899999999999999999999999999999999987311 24689999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 85 TAK 87 (357)
Q Consensus 85 ~~~ 87 (357)
+.+
T Consensus 111 ~~~ 113 (113)
T PF00787_consen 111 ESS 113 (113)
T ss_dssp CT-
T ss_pred CCC
Confidence 863
|
PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A .... |
| >cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=113.07 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
..++.|.|||+||.+||..|...||+..+||||+|..+ | ...++++.|+|+..|+.||+.|++. |.+++|+.+..|
T Consensus 31 ~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP~k~~~-~--~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~F 107 (111)
T cd06884 31 ASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLSTGSHV-G--RSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTF 107 (111)
T ss_pred CceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCCCceee-c--CCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHh
Confidence 36789999999999999999999999999999999665 1 2346899999999999999999985 999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
+.+
T Consensus 108 F~p 110 (111)
T cd06884 108 FHP 110 (111)
T ss_pred cCc
Confidence 864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a |
| >cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.1e-14 Score=111.97 Aligned_cols=78 Identities=23% Similarity=0.381 Sum_probs=69.9
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCC--------CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc-cc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLP--------SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP-VL 74 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p--------~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp-~L 74 (357)
.++.+.|.|||+||.+||..|...|| ..++|+||++... ..+.+++++|+..|+.||+.++.+| .+
T Consensus 25 ~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~lP~~~~~-----~~~~~~~e~R~~~L~~Yl~~Ll~~p~~i 99 (112)
T cd06890 25 DGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPYLPGPVTD-----VVNDSISLKRLNDLNEYLNELINLPAYI 99 (112)
T ss_pred CCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCCCCCCccC-----cchhHHHHHHHHHHHHHHHHHHcCCHHh
Confidence 35788999999999999999999999 4579999987764 2468999999999999999999999 99
Q ss_pred cCChhhhccccc
Q psy18202 75 SVNSHAIIFLTA 86 (357)
Q Consensus 75 ~~~~~~~~FL~~ 86 (357)
.+|+.|..|+..
T Consensus 100 ~~s~~v~~Ff~~ 111 (112)
T cd06890 100 QTSEVVRDFFAN 111 (112)
T ss_pred ccCHHHHHHcCc
Confidence 999999999864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p |
| >cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23 | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-14 Score=113.98 Aligned_cols=73 Identities=25% Similarity=0.264 Sum_probs=64.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhh
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHA 80 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~ 80 (357)
....|.|.|||+||.+||+.|...||+...||+|+|..+ ++.+++|+++|+.+|+.||+.|+.- +.+..++.+
T Consensus 28 ~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP~Kk~~----g~~~~~~ie~Rr~~Le~yL~~Ll~~~~~~~~~~~~ 101 (127)
T cd06874 28 LDETWTVFRRYSRFRELHKTMKLKYPEVAALEFPPKKLF----GNKSERVAKERRRQLETYLRNFFSVCLKLPACPLY 101 (127)
T ss_pred CCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCCCceec----CCCCHHHHHHHHHHHHHHHHHHHHhchhccCCccc
Confidence 356799999999999999999999999889999999988 6678999999999999999999974 666666643
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso |
| >PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-12 Score=115.26 Aligned_cols=186 Identities=12% Similarity=0.257 Sum_probs=146.6
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhhCC----c----hhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKER-KDYVSEAHQFAIVLNTWAGY----E----PQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~-~~l~~~~~~~~~~~~~l~~~----E----~~l~~~l~~~~~~~ 191 (357)
+.+.+..++.+..++..++..++.+...+....++. ..+..++..+|.+|..||.+ + ..|+.++...|+++
T Consensus 36 ~~~ve~~~e~f~~F~k~Md~sv~~l~~~~~~~~kk~~~~~kkE~qkiG~af~~Ls~afe~d~~~~~~~L~~Al~~tg~~y 115 (237)
T PF10456_consen 36 PQDVESQVESFKKFTKSMDDSVKQLSSVANEFAKKHQGPFKKEYQKIGQAFQSLSQAFELDQQQASMPLTNALKHTGDTY 115 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTS--SSHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHhcCCchhhhHHHHHHHHHHHHH
Confidence 334556788889999999999999988888887655 44567777777777777642 1 23999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
..+++++.+ ....-...+.+.|+.|.+.+..+.++++....++..+..+ ++|... +|
T Consensus 116 ~~Ig~l~~~-Qpk~D~~pl~d~L~~Y~GlL~~~pdii~~hk~A~~k~ke~-----------~kl~~e--~K--------- 172 (237)
T PF10456_consen 116 EEIGDLFAE-QPKNDLIPLLDCLKEYRGLLSNFPDIISVHKGALQKVKEC-----------EKLSDE--GK--------- 172 (237)
T ss_dssp HHHHHHHHT-SGGGTHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTCH-----------HHHHHT--TS---------
T ss_pred HHHHHHHHh-ccccchHHHHHHHHHHhhhHhhCccHHHHHHHHHHHHHHH-----------HHHHhc--cC---------
Confidence 999999887 4443335899999999999999999999887766544332 333322 11
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
+ ...+.+.+..+++.|+..+..|+..|+.+|..||+.+|..|...||.||++.++
T Consensus 173 -----------------------~--~~~~~~~v~~R~d~is~a~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~ 227 (237)
T PF10456_consen 173 -----------------------M--SQQEAEEVQRRCDVISYAVLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAE 227 (237)
T ss_dssp -----------------------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------------------C--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 023456677899999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy18202 352 RGN 354 (357)
Q Consensus 352 ~W~ 354 (357)
.|+
T Consensus 228 kLe 230 (237)
T PF10456_consen 228 KLE 230 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
|
This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A. |
| >cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.5e-14 Score=114.10 Aligned_cols=78 Identities=24% Similarity=0.369 Sum_probs=66.8
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCC-----------------------------CCCCCCCCCccccchhhhcCCHHHH
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLP-----------------------------SHIIPPLPEKHSLLEHLNRYSKEFI 54 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p-----------------------------~~~iPplP~K~~~~~~~~~~~~~fi 54 (357)
....|.|.|||+||.+||..|...++ .+.+|+||.|..+ ...++++
T Consensus 33 g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~~~~~~~~~~lP~lP~~~~~-----~~~~~~i 107 (140)
T cd06895 33 GQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRKPEREKKNRRLPSLPALPDI-----LVSEEQL 107 (140)
T ss_pred CCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccccccccccccCCCCCCcccc-----ccCHHHH
Confidence 34589999999999999999998643 2457777777754 2378999
Q ss_pred HHHHHHHHHHHHHHHcCccccCChhhhccccc
Q psy18202 55 LCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 55 e~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~~ 86 (357)
++|+.+||.||+.|+.+|.+++++.+..||+-
T Consensus 108 e~Rr~~Le~YL~~LL~~~~~rn~~~~~~FLeV 139 (140)
T cd06895 108 DSRKKQLENYLQNLLKIPDYRNHPETLEFLEV 139 (140)
T ss_pred HHHHHHHHHHHHHHHcChhhhcCHHHHhhhcc
Confidence 99999999999999999999999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr |
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.8e-11 Score=103.46 Aligned_cols=182 Identities=18% Similarity=0.262 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 136 SNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-----LSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 136 ~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+.++..++++.+.+..+......+......||.++..++....+ ++.++..++.++..+...... +.+.+...+
T Consensus 3 ~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~-~~~~~~~~v 81 (194)
T cd07307 3 DELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQ-LEQKLENKV 81 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 34455567777777777777777888888888888888876532 688999999999999988777 777777899
Q ss_pred chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 211 SHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 211 ~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
.+||..|. .++..++++.+.++.+..+|+.+...+.+.+....
T Consensus 82 ~~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~------------------------------------ 125 (194)
T cd07307 82 IEPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKK------------------------------------ 125 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------------------------------------
Confidence 99999999 99999999999999999998887666543322100
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
...++.+++.+++.++..++..+..+..++..|+..+..++...|..|+..|+.|++++.++|+.
T Consensus 126 -~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~ 190 (194)
T cd07307 126 -DSSKLAEAEEELQEAKEKYEELREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQ 190 (194)
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 11245667778888999999999999999999999999999999999999999999999999974
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=107.28 Aligned_cols=78 Identities=24% Similarity=0.386 Sum_probs=69.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHH-cCcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVT-SHPV 73 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~-~hp~ 73 (357)
+++++.|.|||+||..||..|...||. +++|+||+|..+ ++ .++.++|+..|+.||+.|+ ..|.
T Consensus 29 ~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~lP~k~~~----~~--~~v~e~Rr~~L~~Yl~~Ll~lp~~ 102 (118)
T cd06887 29 DLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHLPAPKWF----DG--QRAAENRQGTLTEYCSTLLSLPPK 102 (118)
T ss_pred CCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCCCCCccc----Cc--chHHHHHHHHHHHHHHHHHhCCch
Confidence 356789999999999999999999996 899999999987 32 3899999999999999995 5679
Q ss_pred ccCChhhhcccccc
Q psy18202 74 LSVNSHAIIFLTAK 87 (357)
Q Consensus 74 L~~~~~~~~FL~~~ 87 (357)
+++|+.+..|+...
T Consensus 103 i~~s~~v~~Ff~~~ 116 (118)
T cd06887 103 ISRCPHVLDFFKVR 116 (118)
T ss_pred hhCCHHHHHHhCcC
Confidence 99999999999865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one |
| >cd07670 BAR_SNX18 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 18 | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.6e-12 Score=105.07 Aligned_cols=183 Identities=10% Similarity=0.187 Sum_probs=140.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+.+...+.+..++...++.++.+...+....++.. .+-..+..+|.+|..|+.+ ...|++++...|+++
T Consensus 7 ~~~VE~kid~f~~F~k~Md~sv~~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaF~~d~~~~s~~L~~Av~~tg~~y 86 (207)
T cd07670 7 LQDVESRIDGFKAFTKKMDESVLQLNHTANEFARKQVTGFKKEYQKVGQSFKGLSQAFELDQQAFSAGLNQAIAFTGEAY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHccCCcccchHHHHHHHHHHHHH
Confidence 4566778889999999999999999888877776653 2456666777777766642 223999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++.+.++-..++ ..+.|.|+.|.+.+..+.+++.-...++. |..+.+++... ||
T Consensus 87 ~~IG~~faeQpk~Dl-~Pl~d~L~~Y~G~L~~fPDii~v~KgA~~-----------KvKE~~k~~~e--gk--------- 143 (207)
T cd07670 87 EAIGELFAEQPRQDL-DPVMDLLALYQGHLANFPDIIHVQKGALT-----------KVKESKKHVEE--GK--------- 143 (207)
T ss_pred HHHHHHHHhcchhhh-HHHHHHHHHHhCccccCCchHHHhHHHHH-----------HHHHHHHHHHh--hc---------
Confidence 999999888333333 58999999999999999999987755443 33334444322 11
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
++ ..+.+....+++.|+-.+..|+..|+..|..||+.+|..|.+.||.||++...
T Consensus 144 ----------------m~---------~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~~QI~Fyq~v~~ 198 (207)
T cd07670 144 ----------------ME---------LQKADGIQDRCNIISFATLAEIHHFHKIRVRDFKSQMQHFLQQQIRFFQKVTQ 198 (207)
T ss_pred ----------------cc---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11245567889999999999999999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33 | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-11 Score=104.79 Aligned_cols=184 Identities=11% Similarity=0.247 Sum_probs=140.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+.+...+.+..++..+++.++.|...+....++.. .+-..+..+|.+|..||.+ +..|++++...|+++
T Consensus 7 ~~~Ve~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~kkEyqkiG~af~~LsqaFe~d~~~~s~~L~~Av~~tG~~y 86 (207)
T cd07669 7 LQDVEERVDVFKAFSKKMDDSVLQLSNVASELVRKHLGGFRKEFQKLGNAFQAISHSFQLDPPYSSEALNNAISHTGRTY 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHH
Confidence 4456778888999999999999998888777775553 2456667777777777642 234999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++++.+ +.......|.|.|++|.+.+..+.+++.-...+.. |..+.+++...
T Consensus 87 ~~IG~~fae-Qpk~D~~pl~d~L~~Y~GlL~~fPDii~v~K~A~~-----------KvkE~~k~~~e------------- 141 (207)
T cd07669 87 EAVGEMFAE-QPKNDLFQMLDTLSLYQGLLSNFPDIIHLQKGAFA-----------KVKESQRMSDE------------- 141 (207)
T ss_pred HHHHHHHHh-cchhhhhHHHHHHHHHhCcccCCccHHHHHHHHHH-----------HHHHHHHhhHH-------------
Confidence 999999887 43333358999999999999999999987655443 23333444321
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.|+. ..+++....+++.|+-.+..|+..|+..|..|++++|..|.+.||.||++...
T Consensus 142 --------------~Km~---------~~~~~~v~~R~~~isya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~ 198 (207)
T cd07669 142 --------------GRMD---------QDEADGIRKRCRVVGFALQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQ 198 (207)
T ss_pred --------------hhhh---------hhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 12345677889999999999999999999999999999999999999999765
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
-
T Consensus 199 k 199 (207)
T cd07669 199 Q 199 (207)
T ss_pred H
Confidence 3
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >cd07668 BAR_SNX9 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=104.28 Aligned_cols=184 Identities=13% Similarity=0.244 Sum_probs=140.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhhCC--------chhHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERK-DYVSEAHQFAIVLNTWAGY--------EPQLSSVIRQVSKAV 191 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~-~l~~~~~~~~~~~~~l~~~--------E~~l~~~l~~~~~~~ 191 (357)
+.+++...+.+..++..+++.++.+...+....++.. .+-..+..+|.+|..|+.. +..|++++...|+++
T Consensus 7 ~~~VE~kid~f~~F~k~MD~svk~l~~~~~e~~kk~~~~~KkEyqkiG~af~~LsqaFe~d~~~~~~~L~~Ai~~tg~~y 86 (210)
T cd07668 7 LVEIEQKCEAVGRFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSTSGYQGETDLNDAITEAGKTY 86 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 4456677888999999999999988887777765553 2455666677777666532 234999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+++++.+ +.......+.|.|+.|.+.+..+.+++.-...+.. |..+.+++... +
T Consensus 87 ~~IG~~fae-Qpk~Dl~pl~d~L~~Y~G~L~~fPDIi~v~KgA~~-----------KvkE~~k~~~e--g---------- 142 (210)
T cd07668 87 EEIASLVAE-QPKKDLHFLMETNHEYKGFLGCFPDIIGAHKGAIE-----------KVKESDKLVAT--S---------- 142 (210)
T ss_pred HHHHHHHHh-cchhhhHHHHHHHHHHhCccccCccHHHHHHHHHH-----------HHHHHHHHhhh--c----------
Confidence 999999888 44333358999999999999999999987755443 33344444432 1
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
|+. ..+++....+++.|+-.+..|+.+|+..|..||+++|..|.+.||.||++...
T Consensus 143 ---------------km~---------~~~~~~v~~R~dviSya~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~ 198 (210)
T cd07668 143 ---------------KIT---------LQDKQNMVKRVSTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAE 198 (210)
T ss_pred ---------------cch---------hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 12355667889999999999999999999999999999999999999998765
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
-
T Consensus 199 k 199 (210)
T cd07668 199 K 199 (210)
T ss_pred H
Confidence 3
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It binds class I polyproline sequences found in dynamin 1/2 and the WASP/N-WASP actin regulators. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosi |
| >cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.6e-13 Score=104.73 Aligned_cols=78 Identities=27% Similarity=0.505 Sum_probs=67.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PV 73 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~ 73 (357)
++.|.|.|||+||..||..|...||. ++||+||+|..+ ++. ..++.++|+..|+.||+.+++. |.
T Consensus 30 g~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~lP~k~~~----g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~ 105 (119)
T cd06888 30 GSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFLPGKILF----RRSHIRDVAVKRLKPIDEYCKALVRLPPH 105 (119)
T ss_pred CCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCCCCCccc----CcchhHHHHHHHHHHHHHHHHHHHcCCce
Confidence 45689999999999999999999996 489999999987 332 3568999999999999999987 56
Q ss_pred ccCChhhhccccc
Q psy18202 74 LSVNSHAIIFLTA 86 (357)
Q Consensus 74 L~~~~~~~~FL~~ 86 (357)
++.|+.+..|..+
T Consensus 106 Is~~~~v~~FF~p 118 (119)
T cd06888 106 ISQCDEVLRFFEA 118 (119)
T ss_pred eecCHHHHHhcCC
Confidence 7799999999865
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains |
| >cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3 | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.8e-10 Score=98.99 Aligned_cols=197 Identities=14% Similarity=0.185 Sum_probs=150.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
-+..|+.|+.....+..++...++|.+-++.-...-+.|..+...++..+..+...+.+ +..+....-.+...+...+
T Consensus 6 ~~T~D~~fe~~~~rf~~lE~~~~kL~Ke~K~Y~dav~~m~~a~~~is~~l~~~~~~~~~~~~~~~~e~y~~~~~~l~~~~ 85 (225)
T cd07590 6 SKTVDRELEREVQKLQQLESTTKKLYKDMKKYIEAVLALSKAEQRLSQDLASGPLCEDNDELRNLVEALDSVTTQLDKTV 85 (225)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 35578999988888888888888888888888888888888888888888876655543 2233333333333333333
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
.+ +...+..++.+|+..|..+...+++++..|+.++.+|..+...+ ++|... ..
T Consensus 86 ~~-~~~~~~~~vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DYD~~r~~~-------~kl~~K----~~-------------- 139 (225)
T cd07590 86 QE-LVNLIQKTFIEPLKRLRSVFPSVNAAIKRREQSLQEYERLQAKV-------EKLAEK----EK-------------- 139 (225)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHHhC----cc--------------
Confidence 33 44445568999999999999999999999999999987655554 444432 00
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+ .+ +.++...+++++.++..|+.++..++.||+.|..-+..-+...|..|+.+|..||..+..+
T Consensus 140 ----k~----~~-~~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~~~r~~f~~p~Fqsl~~~Ql~f~~e~~k~ 204 (225)
T cd07590 140 ----TG----PN-LAKLEQAEKALAAARADFEKQNIKLLEELPKFYNGRTDYFQPCFEALIKSQVLYYSQSTKI 204 (225)
T ss_pred ----CC----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11 3456677888899999999999999999999999999999999999999999999987665
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.5e-12 Score=100.37 Aligned_cols=75 Identities=23% Similarity=0.426 Sum_probs=66.9
Q ss_pred ceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHH-HHcCccccCChhhhcccc
Q psy18202 8 CIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRR-VTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 8 ~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~-i~~hp~L~~~~~~~~FL~ 85 (357)
+.|.|||+||..||..|...||+.++|+||+|..+ ++.+ .+..|+|+..|+.||+. +...|.+.+|+.+..|+.
T Consensus 32 ~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP~k~~~----g~s~~~~vae~R~~~L~~Yl~~Ll~~~~~Is~s~~v~~FF~ 107 (109)
T cd07290 32 TFVQRTFEEFQELHNKLRLLFPSSKLPSFPSRFVI----GRSRGEAVAERRKEELNGYIWHLIHAPPEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCccccCCCCCCCccc----CccccHHHHHHHHHHHHHHHHHHHcCChheecCHHHHHhcc
Confidence 68999999999999999999999999999999876 5543 68899999999999966 567799999999999986
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
+
T Consensus 108 p 108 (109)
T cd07290 108 P 108 (109)
T ss_pred c
Confidence 4
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai |
| >cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.6e-10 Score=95.90 Aligned_cols=192 Identities=13% Similarity=0.127 Sum_probs=151.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-+..++...++|.+-+..-..+-+.|..+-..|+.++..+..........+.. +++.....+.+
T Consensus 7 ~~T~D~~Fe~~e~~f~~~e~~~~kL~k~~K~Y~~av~~m~~~q~~~~e~l~~lY~p~~~~~~~~~~---v~e~~d~~~~~ 83 (211)
T cd07588 7 DETRDEVFDEHVNNFNKQQASANRLQKDLKNYLNSVRAMKQASKTLSETLKELYEPDWPGREHLAS---IFEQLDLLWND 83 (211)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccHHHHHH---HHHHHHHHHHH
Confidence 445789999999999999999999999988888888889888889999998775444323333333 34444444444
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+...+..|+..|..++..++..+..|..++.+|..+...+ ++|... .
T Consensus 84 -l~~~l~~~Vl~Pl~~~~s~f~~i~k~I~KR~~KllDYDr~r~~~-------~kL~~K----~----------------- 134 (211)
T cd07588 84 -LEEKLSDQVLGPLTAYQSQFPEVKKRIAKRGRKLVDYDSARHNL-------EALKAK----K----------------- 134 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH-------HHHHhc----c-----------------
Confidence 44455678999999999999999999999999999987765555 444432 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..+ +.++..+|++++.++..|+.++..++.||+.|..-|..-+...|..++..|..||..+..+
T Consensus 135 -~kd-------e~KL~kae~el~~Ak~~Ye~lN~~L~~ELP~L~~~ri~f~~p~F~sl~~~q~~F~~e~~~~ 198 (211)
T cd07588 135 -KVD-------DQKLTKAEEELQQAKKVYEELNTELHEELPALYDSRIAFYVDTLQSIFAAESVFHKEIGKV 198 (211)
T ss_pred -ccc-------HhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011 2345567788899999999999999999999999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th |
| >cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=93.72 Aligned_cols=192 Identities=11% Similarity=0.131 Sum_probs=148.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++.......++...++|.+-+..-..+-+.|..+-..|+.++..+.....+.......+++..+. ++++
T Consensus 7 e~T~D~~Fe~~errf~~lE~~~~kL~Ke~K~Y~dav~~m~~sq~~~se~l~e~Y~p~~~g~~~~~~~~~~~d~---~~~d 83 (211)
T cd07611 7 DETKDEQFEEYVQNFKRQETEGTRLQRELRAYLAAIKGMQEASKKLTESLHEVYEPDWYGRDDVKTIGEKCDL---LWED 83 (211)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchHHHHHhhHHH---HHHH
Confidence 4557899999888889999999999888888888888888888899999887764442222223344444443 3333
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.+...+.+|+..|..+...++.++..|+.++.+|..+...+ ++|... ..
T Consensus 84 -l~~~lv~~vl~P~~~~~s~f~~I~~~I~KR~hKllDYD~~r~~~-------~kL~~k----~~---------------- 135 (211)
T cd07611 84 -FHQKLVDGALLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARHHL-------EALQTS----KR---------------- 135 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHhcc----cc----------------
Confidence 33334456899999999999999999999999999987755554 555432 00
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+ +.++..+|++++.|+..|+.++..++.||+.+..-|..-+...|..++..|..||..+..+
T Consensus 136 --kD-------e~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L~~~Ri~f~~psFeal~~~q~~f~~E~~k~ 198 (211)
T cd07611 136 --KD-------EGRIAKAEEEFQKAQKVFEEFNVDLQEELPSLWSRRVGFYVNTFKNVSSLEAKFHKEISVL 198 (211)
T ss_pred --cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 11 3345566777889999999999999999999999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit |
| >PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-09 Score=91.49 Aligned_cols=195 Identities=13% Similarity=0.220 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.|....-+.+-|...+.++..++.....+...-..|-+-...|+..+...++.|.. +..+|..+|+++..+.+..+- .
T Consensus 9 rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa-~ 87 (219)
T PF06730_consen 9 RDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQA-E 87 (219)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHH-H
Confidence 34445556667777777887777777776655555555556778888888888865 888999999999999877555 6
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
.+.++.++..||..|...|...++=++....+.. .--++..+++++...+ |+
T Consensus 88 v~RlE~KVv~pL~~Y~~~cK~~r~elK~~~~ar~-------kEikq~~~Leklr~k~----ps----------------- 139 (219)
T PF06730_consen 88 VERLEAKVVEPLSQYGTICKHARDELKKFNKARN-------KEIKQLKQLEKLRQKN----PS----------------- 139 (219)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHccC----Cc-----------------
Confidence 6777889999999999999988887776654332 2234455566766542 21
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++. .|.+.+.++..+..+....+..+.+-+..|.++|..|++.+|.+|+..+..||-+.+++|+.
T Consensus 140 -dr~-------~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~sdFv~iEM~fHaKALEv~T~ 204 (219)
T PF06730_consen 140 -DRQ-------IISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIFSDFVTIEMVFHAKALEVYTA 204 (219)
T ss_pred -cch-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 24455666777788888889999999999999999999999999999999999999999953
|
Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown. |
| >PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-10 Score=97.45 Aligned_cols=189 Identities=19% Similarity=0.309 Sum_probs=154.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHhhCCch---hHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAH-------QFAIVLNTWAGYEP---QLSSVIRQVSKAVDT 193 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~-------~~~~~~~~l~~~E~---~l~~~l~~~~~~~~~ 193 (357)
.|++|+.....+..++..+..+.+.+......-..+..... .+|.++..++.... .++..+..++.++..
T Consensus 24 ~D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 103 (229)
T PF03114_consen 24 IDEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQKNMKSPFEELADALIELGSEFSDDSSLGNALEKFGEAMQE 103 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTHHHHHHHHHHHHHHHCTSTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhhhhHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHH
Confidence 47889999888899988888888888888877777776666 88988888765422 278899999999999
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccC
Q psy18202 194 TASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSS 273 (357)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~ 273 (357)
+...... +...+...+.+||..+..++..++.++..|+.+..+|+.+...+. ++... ++.
T Consensus 104 i~~~~~~-~~~~~~~~vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~k~~-------k~~~~---~~~--------- 163 (229)
T PF03114_consen 104 IEEARKE-LESQIESTVIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARSKLE-------KLRKK---KSK--------- 163 (229)
T ss_dssp HHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCHTT---SSB---------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhh---hcc---------
Confidence 9887766 666677789999999999999999999999999999877555543 33322 000
Q ss_pred CCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 274 TNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 274 ~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+ +++++.++..|+.++..+..+|+.|...+...+...|..|+..|..||+.+.++|
T Consensus 164 -----------~~~-----------~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l 221 (229)
T PF03114_consen 164 -----------SSK-----------EEKLEEAKEEFEALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQIL 221 (229)
T ss_dssp -----------THH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccc-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 6678888899999999999999999988888888999999999999999999988
Q ss_pred c
Q psy18202 354 N 354 (357)
Q Consensus 354 ~ 354 (357)
.
T Consensus 222 ~ 222 (229)
T PF03114_consen 222 E 222 (229)
T ss_dssp H
T ss_pred H
Confidence 5
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A .... |
| >cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-09 Score=90.95 Aligned_cols=195 Identities=15% Similarity=0.243 Sum_probs=149.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~ 198 (357)
.+..|+.|++....+..++...++|.+.+.......+.|..+...++..|..+.....+ ..........+++.+...+
T Consensus 6 e~T~D~~F~~~e~~f~~~e~~~~kL~k~~k~y~da~~~l~~~q~~i~~~l~~lY~p~~~~~~~~~~~~y~~~v~~l~~~~ 85 (224)
T cd07591 6 ERTVDREFEFEERRYRTMEKASTKLQKEAKGYLDSLRALTSSQARIAETISSFYGDAGDKDGAMLSQEYKQAVEELDAET 85 (224)
T ss_pred cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHhHHHHHHHHHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999887654332 2122233333344443221
Q ss_pred HHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYS 278 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~ 278 (357)
..-+...+...+..|+..+..++..++.++..|+.++.+|+.+...+.+ |... +.
T Consensus 86 ~~el~~~~~~~V~~Pl~~~~~~~~~i~k~IkKR~~KllDYD~~~~k~~k-------l~~K----~~-------------- 140 (224)
T cd07591 86 VKELDGPYRQTVLDPIGRFNSYFPEINEAIKKRNHKLLDYDAARAKVRK-------LIDK----PS-------------- 140 (224)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhHhhHHHHHHHHHH-------HHhc----cc--------------
Confidence 1102222456889999999999999999999999999999887665543 3322 00
Q ss_pred ccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 279 LWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 279 ~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.+ +.++..++.+.+.++..|+.++..++.||+.|..-+..-+...+..++..|..++.....
T Consensus 141 ----kd-------~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~~~~~~y~ 202 (224)
T cd07591 141 ----ED-------PTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLRFFTEGYE 202 (224)
T ss_pred ----CC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 145667778888999999999999999999999999999999999999999999876544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an |
| >cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=94.50 Aligned_cols=75 Identities=24% Similarity=0.377 Sum_probs=66.0
Q ss_pred ceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcccc
Q psy18202 8 CIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFLT 85 (357)
Q Consensus 8 ~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL~ 85 (357)
..|.|||++|..||..|...||.+.+|+||.|..+ |+. ..+..++|+..|+.||+.|++- |.+.+|+.+..|+.
T Consensus 32 ~~I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP~k~~~----grs~~~~vae~R~~~L~~Yl~~Ll~~p~~Is~~d~v~~FF~ 107 (109)
T cd07289 32 SFVFRTFDEFQELHNKLSILFPLWKLPGFPNKMVL----GRTHIKDVAAKRKVELNSYIQSLMNSSTEVAECDLVYTFFH 107 (109)
T ss_pred EEEEeeHHHHHHHHHHHHHHCCcccCCCCCCCeee----CCCcchHHHHHHHHHHHHHHHHHHcCChhhhcChHHHHhcc
Confidence 55999999999999999999999999999999876 432 2578999999999999999865 67889999999975
Q ss_pred c
Q psy18202 86 A 86 (357)
Q Consensus 86 ~ 86 (357)
+
T Consensus 108 p 108 (109)
T cd07289 108 P 108 (109)
T ss_pred c
Confidence 3
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >cd07612 BAR_Bin2 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 2 | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.9e-09 Score=88.81 Aligned_cols=192 Identities=15% Similarity=0.163 Sum_probs=144.4
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-...++...++|.+-+..-..+-+.|..+...|+.++..+.....+-...+..+.+..+... ++
T Consensus 7 e~T~D~~Fe~~e~rf~~le~~~~kL~Ke~K~Y~~av~~M~~~q~~~se~l~e~Y~~~~~~~~~~~~v~e~~d~~~---~~ 83 (211)
T cd07612 7 VETKDEQFEQCAMNLNMQQSDGNRLYKDLKAYLNAVKVMHESSKRLSQTLQDIYEPDWDGHEDLGAIVEGEDLLW---ND 83 (211)
T ss_pred cccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcccHHHHHHhccHHHH---HH
Confidence 345688898888888888888888888887777777778777778888887765433222223333444333333 33
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+...+.+||..|..+...++..+..|..++.+|..+...+ .+|... +
T Consensus 84 -~~~~~~~~vL~pi~~~~s~f~~i~~~i~KR~~KllDYD~~R~~~-------~kl~~k---~------------------ 134 (211)
T cd07612 84 -YEAKLHDQALRTMESYMAQFPDVKERVAKRGRKLVDYDSARHHL-------EALQNA---K------------------ 134 (211)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-------HHHHhc---c------------------
Confidence 33334457899999999999999999999999999987755544 444432 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..+ +.++..++++++.|+..|+.++..++.||+.+..-|..-+...|..++..|..||..+..+
T Consensus 135 -~kD-------~~KL~kAe~el~~Ak~~ye~lN~~L~~ELP~L~~~Ri~f~~psFeal~~~q~~F~~E~~k~ 198 (211)
T cd07612 135 -KKD-------DAKIAKAEEEFNRAQVVFEDINRELREELPILYDSRIGCYVTVFQNISNLRDTFYKEMSKL 198 (211)
T ss_pred -ccc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001 3456667788899999999999999999999999999999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 2 (Bin2) is a BAR domain containing protein that is mainly expressed in hematopoietic cells. It is upregulated during granulocyte differentiation and is thought to function primarily in this lineage. The BAR domain of Bin2 is closely related to the BAR domains of amphiphysins, which function primarily in endocytosis and other membrane remodeling events. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Unlike amphiphysins, Bin2 does not appear to contain a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 ( |
| >cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-08 Score=88.57 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=147.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-------------HHHHHHHHHHHH
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-------------LSSVIRQVSKAV 191 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-------------l~~~l~~~~~~~ 191 (357)
|+.|+....-+...+..++.|.+-+.........|......|+..|..+.....+ ....+......+
T Consensus 1 D~~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 80 (216)
T cd07599 1 DEQFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIVGPKESVGSHPAPESTLARLSRYVKAL 80 (216)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCCcCcCCCCCcHHHHHHHHHHHHHH
Confidence 5678888888888888889998888888888888888888999988887643211 113344455555
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
+.+...... ..+.+...+..|+..+..++..++.++..|+.++.+|+.+...+++. +... +.
T Consensus 81 ~~l~~~~~~-~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~------~~~k----~~------- 142 (216)
T cd07599 81 EELKKELLE-ELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKL------LQKK----KE------- 142 (216)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH------HhcC----CC-------
Confidence 555443333 22345678999999999999999999999999999998877777551 2211 00
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.+ .+=+.++..++.+.+.++..|+.++..++.||+.|-.-...-+..++..|...|..+|..+..
T Consensus 143 -----------~~----~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~ 207 (216)
T cd07599 143 -----------LS----LKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFLPPLFKSFYYIQLNIYYTLHE 207 (216)
T ss_pred -----------CC----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 011344556677788899999999999999999999999999999999999999999987654
Q ss_pred c
Q psy18202 352 R 352 (357)
Q Consensus 352 ~ 352 (357)
.
T Consensus 208 ~ 208 (216)
T cd07599 208 Y 208 (216)
T ss_pred H
Confidence 3
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo |
| >cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1 | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.7e-11 Score=94.19 Aligned_cols=80 Identities=23% Similarity=0.393 Sum_probs=59.6
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccc-------h---h---hh-cCCHHHHH----HHHHHHHHHHHH
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLL-------E---H---LN-RYSKEFIL----CRMKLLDQFLRR 67 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~-------~---~---~~-~~~~~fie----~R~~~L~~fL~~ 67 (357)
-.|.|.|||+||..||..|.. |...+--|||+|..-. + . +. ..+....+ .|+++|+.||+.
T Consensus 37 ~~w~V~rRy~~F~~Lh~~L~~-~~~~~~~plP~k~~~~~r~~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~ 115 (135)
T cd07296 37 FTWQVKRKFKHFQELHRELLR-YKAFIRIPIPTRSHTVRRQTIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSK 115 (135)
T ss_pred EEEEEEeehHHHHHHHHHHHh-cCCCCCCCCCcccchhhccccccccccccccCCCCCCccccccchHHHHHHHHHHHHH
Confidence 479999999999999999998 5544333567766410 0 0 00 11222333 899999999999
Q ss_pred HHcCccccCChhhhccccc
Q psy18202 68 VTSHPVLSVNSHAIIFLTA 86 (357)
Q Consensus 68 i~~hp~L~~~~~~~~FL~~ 86 (357)
|++.|..++++.+..||+.
T Consensus 116 LL~~~~~Rn~~a~~eFLeV 134 (135)
T cd07296 116 LLKMPMYRNYHATMEFIDV 134 (135)
T ss_pred HhcChhhcCCHHHHhheec
Confidence 9999999999999999974
|
The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will |
| >smart00721 BAR BAR domain | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.1e-08 Score=85.77 Aligned_cols=194 Identities=11% Similarity=0.151 Sum_probs=147.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHhhC-------Cch--hHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLY---KERKDYVSEAHQFAIVLNTWAG-------YEP--QLSSVIRQVSKAV 191 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---k~~~~l~~~~~~~~~~~~~l~~-------~E~--~l~~~l~~~~~~~ 191 (357)
.|+.|++...-++.++..+.++.+.+.... ...+.+......|+..+..+.. .+. .+..++..++..+
T Consensus 25 ~D~~f~~le~~~~~~~~~~~kl~k~~~~y~q~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (239)
T smart00721 25 LDEDFEELERRFDTTEAEIEKLQKDTKLYLQPNPAVRAKLASQKKLSKSLGEVYEGGDDGEGLGADSSYGKALDKLGEAL 104 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHhcCCCCccccCchhHHHHHHHHHHHHH
Confidence 399999999999999999999988888887 5666666666666776666522 122 2677788888888
Q ss_pred HHHHHHHHHHhhhhhhhh-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy18202 192 DTTASLHKNLLIEPFHEH-NSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTA 270 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~ 270 (357)
..+...... + ...... +.+++..+...+..++..++.|+.+..+|+.+...+.+.+....+
T Consensus 105 ~~~~~~~~~-~-~~~~~~~i~~~~~~~~~~~~~~~~~~kk~~~~~lDyD~~~~kl~~~~~~~~~---------------- 166 (239)
T smart00721 105 KKLLQVEES-L-SQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDYDSARHKLKKAKKSKEK---------------- 166 (239)
T ss_pred HHHHhhHHH-H-HHHHHHhhhhHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccC----------------
Confidence 888776554 4 333334 444555777999999999999999999998876666544321100
Q ss_pred ccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 271 TSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 271 ~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
+ . .+ ++.+++++++.++..|+.++..+..|+..|...+...+...|..|+..|..||+++.
T Consensus 167 ------------~--~----~~-kl~~~e~el~~ak~~fe~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~ 227 (239)
T smart00721 167 ------------K--K----DE-KLAKAEEELRKAKQEFEESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESY 227 (239)
T ss_pred ------------C--h----hh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 12 566788888999999999999999999999988888899999999999999999999
Q ss_pred hccc
Q psy18202 351 DRGN 354 (357)
Q Consensus 351 ~~W~ 354 (357)
++|+
T Consensus 228 ~~l~ 231 (239)
T smart00721 228 KLLQ 231 (239)
T ss_pred HHHH
Confidence 8875
|
|
| >cd07589 BAR_DNMBP The Bin/Amphiphysin/Rvs (BAR) domain of Dynamin Binding Protein | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-07 Score=81.14 Aligned_cols=181 Identities=13% Similarity=0.130 Sum_probs=138.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.|+.|++....+..++..++.+.+-+..-..+-+.+......++..+..+.....+ ....+..+..+...+....-...
T Consensus 3 ~D~~fd~~e~rF~~~e~~~~~l~kd~k~Y~~~~~~~~~~~~~~~~~~~d~y~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 82 (195)
T cd07589 3 KDKEFDELEKKFGSLEKQVQLVVRNVELYLQHVQESVLVKVLALEVVLDLYPSNHPRLESKWERFRRVVRGISSKALPEF 82 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889888888888888888888888777777777766666777777666554322 22233444455544443322214
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
...+...+..|+..+..+...++.++..|..++.+|+.....+.+ +.
T Consensus 83 ~~~i~~~V~~Pl~~~~~~~~~~~k~I~KR~~KllDYdr~~~~~~k-------~~-------------------------- 129 (195)
T cd07589 83 KSRVRKLVIEPLSSLLKLFSGPQKLIQKRYDKLLDYERYKEKKER-------GG-------------------------- 129 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhccHHHHHHHHHh-------hc--------------------------
Confidence 555667899999999999999999999999999999886654432 11
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
..+.+.+.+...|+.++..++.||++|..-+..-+...|..|+..|..++....+
T Consensus 130 --------------k~e~~l~~a~~~y~~lN~~L~~ELP~l~~~~~~~l~~~~~s~~~~Q~~~~~~~~~ 184 (195)
T cd07589 130 --------------KVDEELEEAANQYEALNAQLKEELPKFNQLTAQLLETCLKSFVELQRDLYDTLLK 184 (195)
T ss_pred --------------chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355678888999999999999999999999999999999999999999987765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. DyNamin Binding Protein (DNMBP), also called Tuba, is a Cdc42-specific Guanine nucleotide Exchange Factor (GEF) that binds dynamin and various actin regulatory proteins. It serves as a link between dynamin function, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. DNMBP contains BAR and SH3 domains as well as a Dbl Homology domain (DH domain), which harbors GEF activity. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of DNMBP may be involved in binding to membranes. The gene encoding DNMBP is a candidate gene for late onset Alzheimer's disease. |
| >cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1 | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=84.67 Aligned_cols=79 Identities=27% Similarity=0.446 Sum_probs=66.6
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcC--CHHHHHHHHHHHHHHHHHHHcC-
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRY--SKEFILCRMKLLDQFLRRVTSH- 71 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~--~~~fie~R~~~L~~fL~~i~~h- 71 (357)
+++++.|.|||+||..||..|...||- ++||.||.+..+ ++. ..+--++|+..|+.|++.+++-
T Consensus 30 dgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~~~~~----~~~~~~~~~a~~R~~~L~~Y~~~Ll~lp 105 (121)
T cd06889 30 DGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKDAPSL----GSLKGSTSRSLARLKLLETYCQELLRLD 105 (121)
T ss_pred CCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCCCccc----CCcccccchHHHHHHHHHHHHHHHHcCC
Confidence 457789999999999999999999992 799999999886 332 2234578999999999999976
Q ss_pred ccccCChhhhccccc
Q psy18202 72 PVLSVNSHAIIFLTA 86 (357)
Q Consensus 72 p~L~~~~~~~~FL~~ 86 (357)
|.+.+|+.+..|...
T Consensus 106 ~~Is~~~~V~~FF~p 120 (121)
T cd06889 106 EKVSRSPEVIQFFAP 120 (121)
T ss_pred cceecCHHHHHhcCC
Confidence 678899999999764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain |
| >KOG3771|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.7e-07 Score=84.91 Aligned_cols=192 Identities=15% Similarity=0.167 Sum_probs=141.7
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++...-+..++..-++|.+-+..-...-+.|..+...|...+......+-.....+..+.+..+.+- .+
T Consensus 25 ~~TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~eiy~p~~~g~~~l~~v~~~~d~l~---~d 101 (460)
T KOG3771|consen 25 DETKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEIYEPDWPGRDYLQAVADNDDLLW---KD 101 (460)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHHH---HH
Confidence 456688898887777777777777777666666666666666666776665544332223444555555444443 33
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+..++..+|..|..+...++..+..|..++++|..+...+++....+++
T Consensus 102 -~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~k-------------------------- 154 (460)
T KOG3771|consen 102 -LDQKLVDQVLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKK-------------------------- 154 (460)
T ss_pred -HHHHHHHhhhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCC--------------------------
Confidence 44445568999999999999999999999999999998776555444333311
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+ +.++...|.+++.++..|+.++..+++||..+-.-|.--+...|..+..+|+.||+.+..+
T Consensus 155 ---d-------~~k~~KAeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl 216 (460)
T KOG3771|consen 155 ---D-------EAKLAKAEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKL 216 (460)
T ss_pred ---C-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Confidence 1 1233347788899999999999999999999999999999999999999999999998554
|
|
| >cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-08 Score=74.22 Aligned_cols=76 Identities=18% Similarity=0.338 Sum_probs=63.6
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
+....|.|+|.+|..||..|...||..++|-+|.+-.+ +..+. -++|.+.|+.||..+++- |.+.+|+.+..|
T Consensus 24 ~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~~~~~----~~~~~--~~~R~~~L~~Yl~~Ll~~~~eVa~sd~v~sF 97 (101)
T cd06896 24 NLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPHWWHL----PFTDS--DHKRVRDLNHYLEQLLSGSREVANSDCVLSF 97 (101)
T ss_pred CCcceeeecHHHHHHHHHHHHHHCccccccCCCCcccc----CcccH--HHHHHHHHHHHHHHHHccCHHHhcchHHHHH
Confidence 45668999999999999999999999999999999654 22233 367999999999998865 789999999888
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
..+
T Consensus 98 F~~ 100 (101)
T cd06896 98 FLS 100 (101)
T ss_pred hhc
Confidence 643
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom |
| >cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.3e-05 Score=64.85 Aligned_cols=188 Identities=16% Similarity=0.239 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc---hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE---PQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E---~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+......++.++..+.++.+....++..-+.+..+...|+.++..++..- +.++.++.+++..+..+...... +.+
T Consensus 4 l~~~E~~~~~l~~~l~kl~K~~~~~~~ag~~~~~a~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~-L~~ 82 (200)
T cd07603 4 LEQVEADVSELETRLEKLLKLCNGMVDSGKTYVNANSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTI-LLD 82 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 45677788999999999999999999888888888889999999988542 23889999999999999887665 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
..+..+.+||..++ ..+..+|++=+.=++...+|+.+ ....-.+...
T Consensus 83 q~~~~i~~pL~~F~k~dL~~vKE~kk~Fdk~s~~yd~a-------l~k~~~~~K~------------------------- 130 (200)
T cd07603 83 QAQRTVSTQLQNFVKEDIKKVKESKKHFEKISDDLDNA-------LVKNAQAPRS------------------------- 130 (200)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhccCCC-------------------------
Confidence 66678888877553 45566666555555555444442 2221111111
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+ ..++.+...++..+...+...+=.....+...+..|..++-+.|..|...|..|+++..+.|+-
T Consensus 131 ------K-~~~~~Ea~~~L~~~Rk~f~~~sldyv~~in~iq~kKk~e~le~ll~~~~A~~tff~qG~el~~d 195 (200)
T cd07603 131 ------K-PQEAEEATNILTATRSCFRHTALDYVLQINVLQAKKRHEILSTLLSYMHAQFTFFHQGYDLLED 195 (200)
T ss_pred ------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 0 1244555566677777776666666667777778888899999999999999999999998863
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.7e-05 Score=69.34 Aligned_cols=185 Identities=14% Similarity=0.203 Sum_probs=121.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhH-----HHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHH
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTR----LYKERK-----DYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKA 190 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~----l~k~~~-----~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~ 190 (357)
+.+..|.++...++.....+..+.+.... |.+.+- +-......+|.++..-|. .+..++.+|..+|++
T Consensus 4 ~l~ddf~~le~~~d~~~~~~~~l~~~~~~y~~~l~k~~~~g~~k~k~~p~~~Lg~~M~~~g~~lg~dS~~G~aL~~~G~a 83 (215)
T cd07593 4 TLSEEFLELEKEIELRKEGMERLHRSTEAYVEYLSKKKPLLDDKDKCLPVEALGLVMINHGEEFPQDSEYGSCLSKLGRA 83 (215)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccccCChHHHHHHHHHHHHhhCCCCChHHHHHHHHHHH
Confidence 34667877777777666666655544433 333320 011133455555544432 233499999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy18202 191 VDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTA 270 (357)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~ 270 (357)
..+++.+... +...+...|.+||..++. .+|++.+.|.++. ...-.++.+++.+.+-.
T Consensus 84 ~~kia~~q~~-f~~~~~~~~l~pL~~~l~---~~k~i~k~RKkLe----~rRLdyD~~ksk~~kak-------------- 141 (215)
T cd07593 84 HCKIGTLQEE-FADRLSDTFLANIERSLA---EMKEYHSARKKLE----SRRLAYDAALTKSQKAK-------------- 141 (215)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc--------------
Confidence 9999998665 666666788999887764 4566666664422 22223333333332211
Q ss_pred ccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 271 TSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 271 ~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
..-..++.+++.++.+|+..++.+...+..|. ....+...-|..|++.|++||+++.
T Consensus 142 ----------------------~~~~~~eeElr~Ae~kfees~E~a~~~M~~i~-~~e~e~~~~L~~lv~AQl~Yh~q~~ 198 (215)
T cd07593 142 ----------------------KEDSRLEEELRRAKAKYEESSEDVEARMVAIK-ESEADQYRDLTDLLDAELDYHQQSL 198 (215)
T ss_pred ----------------------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHHHHHH
Confidence 11124677788899999999999999999996 4468899999999999999999988
Q ss_pred hc
Q psy18202 351 DR 352 (357)
Q Consensus 351 ~~ 352 (357)
++
T Consensus 199 e~ 200 (215)
T cd07593 199 DV 200 (215)
T ss_pred HH
Confidence 76
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol |
| >cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00014 Score=63.75 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCc-----hhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYE-----PQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E-----~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
.+.+-++.+...+.++.+....++..-..+..+...|+.++..++..- +.++.+|..++.++..+...... +..
T Consensus 6 ~lee~l~~~~~~l~Kl~K~~k~~~~~g~~~~~~~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~-L~~ 84 (215)
T cd07604 6 ALEESLEGDRVGLQKLKKAVKAIHNSGLAHVENELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKN-LMQ 84 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 345566777778888888888888888888888888999999888642 23889999999999999988776 777
Q ss_pred hhhhhcchhHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 205 PFHEHNSHPMKDYLMY-IDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~-~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
+....+..||..+... +..++ ++=+.=+++..+|+.+...+.+.|....+.. |
T Consensus 85 ~~~~~i~~pL~~f~k~dL~~~k~e~KK~fdK~s~~ye~~~~k~~k~Kk~~~~~~-------------------~------ 139 (215)
T cd07604 85 NLNNIIMFPLDSLLKGDLKGSKGDLKKPFDKAWKDYETKASKIEKEKKQLAKEA-------------------G------ 139 (215)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh-------------------h------
Confidence 7777889998888776 66666 6555556666566554322222111111000 0
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+-..+....++.++++.....|....-...--|...+..|..+|-+.|..|...|..|+++..++-
T Consensus 140 -----~~r~e~~~~e~~~~l~~~R~~F~~~~~~yv~~l~~lq~kKk~e~Le~ll~~~~Aq~~fF~~G~~ll 205 (215)
T cd07604 140 -----MIRTEITGAEIAEEMEKERRMFQLQMCEYLIKVNEIKTKKGVDLLQHLVEYYHAQNSYFQDGLKVI 205 (215)
T ss_pred -----hcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111224556667777777777665555666777888999999999999999999999987753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate |
| >cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00014 Score=63.49 Aligned_cols=186 Identities=16% Similarity=0.272 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+..-+..++..+++|.+....++...++++.+...|+..+..++ ..++-+..++.+++..+..+...... +
T Consensus 6 ~~E~d~~~L~~~~~kL~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~-L 84 (215)
T cd07601 6 VFEEDALQLSSYMNQLLQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHST-L 84 (215)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 445556777777888888888888888888888888888888883 12222567999999999999988776 7
Q ss_pred hhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.+.....+..||..+. ..+..+|++=+.=++...+|+. +....-+|... +
T Consensus 85 ~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~~d~-------al~K~~~l~k~---k------------------- 135 (215)
T cd07601 85 SSQLADTVLHPISQFMESDLAEIMTLKELFKAASNDHDG-------VLSKYSRLSKK---R------------------- 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHH-------HHHHHhhCCcC---C-------------------
Confidence 7777778999998887 7777777666555555544444 22222333221 0
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+++ ..+++.++......+....-...--|...+..|.-++-+.|..|...|+.|+++..+.-
T Consensus 136 --~~~~~------~~Ea~~~l~~~R~~F~~~~ldYv~~ln~iq~kKk~e~Le~ll~~m~A~~tff~qG~ell 199 (215)
T cd07601 136 --ENTKV------KIEVNDEVYACRKKQHQTAMNYYCALNLLQYKKTTALLEPMIGYLQAQIAFFKMGPEMF 199 (215)
T ss_pred --CchHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111 12566677777777777777777778888889999999999999999999999877653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00028 Score=61.09 Aligned_cols=187 Identities=14% Similarity=0.221 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCch----hHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEP----QLSSVIRQVSKAVDTTASLH 198 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~----~l~~~l~~~~~~~~~~~~~~ 198 (357)
+.+...-++.+...+++|.+....++...++++.+...|+..+..++ ..++ .++.+|..++..+..+....
T Consensus 4 l~~~E~ele~l~~~ikkLiK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~tDDe~~i~~~L~kF~~~l~ei~~~r 83 (207)
T cd07602 4 LHEHEAELERTNKAIKELIKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQTDDEIEIAESLKEFGRLIETVEDER 83 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888888888888888888888888888888888888886 2222 27899999999999998876
Q ss_pred HHHhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcc
Q psy18202 199 KNLLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSY 277 (357)
Q Consensus 199 ~~~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~ 277 (357)
.. +.+.....+..||..+.. .+..+|+.-++=++.-..|.. .....-.|... +
T Consensus 84 ~~-L~~q~~~~l~~pL~~F~k~dl~~~ke~kk~FdK~se~~~~-------al~k~~~lsk~---k--------------- 137 (207)
T cd07602 84 DR-MLENAEEQLIEPLEKFRKEQIGGAKEEKKKFDKETEKFCS-------SLEKHLNLSTK---K--------------- 137 (207)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhccCCC---C---------------
Confidence 65 666666778888887755 455555554444443333322 22221222111 1
Q ss_pred cccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 278 SLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 278 ~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
. ..++.+++..+..+...+...+-...--|...+..|.-+|-+.|..|...++.|+++..++-
T Consensus 138 ------k-------~~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkfefle~ll~~m~a~~tff~qG~el~ 200 (207)
T cd07602 138 ------K-------ENQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKFEFVETLLSFMYGWLTFYHQGHEVA 200 (207)
T ss_pred ------C-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 0 12344556667777777777776666778888888999999999999999999999877653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1 |
| >cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC) | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00032 Score=60.80 Aligned_cols=187 Identities=14% Similarity=0.165 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HH-----HHHHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LS-----SVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~-----~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..+..-++.++..+.++.+....++.....++.+-..|+..+..++....+ +. .+|..++..+..+......
T Consensus 3 i~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~~~~dD~~~~a~gg~~l~kF~~~l~ei~~~~~~- 81 (202)
T cd07606 3 LQELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFGGGHDDPISVAVGGPVMTKFTSALREIGSYKEV- 81 (202)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHhccchHHHHHHHHHHHHHHHHHH-
Confidence 3456666788888888888888888888888888888899999988765433 33 4799999999999887666
Q ss_pred hhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....+..||..+. .++..+|++=++=++...+|+. .....-++...
T Consensus 82 L~~q~~~~l~~pL~~F~k~Dl~~vKe~kK~FdK~s~~yd~-------al~K~~~l~k~---------------------- 132 (202)
T cd07606 82 LRSQVEHMLNDRLAQFADTDLQEVKDARRRFDKASLDYEQ-------ARSKFLSLTKD---------------------- 132 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccc----------------------
Confidence 76666678888888776 4455555554444444444433 22222222211
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+. ++.+++.++..+...+....-....-|...+..|.-++-+.|..|...|+.|+++..++-
T Consensus 133 --~k~~-------~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ll~~m~A~~tFF~qG~ell 196 (202)
T cd07606 133 --AKPE-------ILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLERLSGSMDAHLAFFKSGYELL 196 (202)
T ss_pred --CchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112 234666677777777777777777777778888899999999999999999999987753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00027 Score=61.21 Aligned_cols=186 Identities=12% Similarity=0.215 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY---EPQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~---E~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++..-+..++..|.++.+....+++.-+.+.++...|+..+..+... ++-++.+|..+++++..+...... +.+
T Consensus 4 ~~~~E~~~~~le~~l~kl~K~~~~~~d~g~~~~~a~~~F~~~l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~-l~~ 82 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVKLCSGMIEAGKAYATTNKLFVSGIRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMI-LFD 82 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4566677888899999998888888888888888899999888887643 223889999999999998877655 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
..+..+.+||..+. ..+..+|++=++=++...+|+.+ |.+ ...+.. +
T Consensus 83 q~e~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~a---l~k----~~~~k~----k--------------------- 130 (200)
T cd07637 83 QAQRSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIA---LVK----NAQAPR----H--------------------- 130 (200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHH----HhhcCC----C---------------------
Confidence 66667888887553 45566666555555554444332 211 111110 1
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.+ .++.+...++..+...|...+=.....+...+..|.-+|-+.|..|...|+.|+++..++-
T Consensus 131 k~-------~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~e~le~ll~~~~a~~tff~qG~el~ 193 (200)
T cd07637 131 KP-------HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKFEILDSMLSFMHAQYTFFQQGYSLL 193 (200)
T ss_pred Ch-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 01 2345666677777777777777777888888889999999999999999999999887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00015 Score=64.85 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=116.3
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGT---------RLYKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAV 191 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~---------~l~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~ 191 (357)
.|+.|..+...++.+...+..+.+.+. +.-++.+ ......+|.++..-|. .+..++.+|..+|++.
T Consensus 13 l~d~~~~lE~~~d~~k~~~~~~~k~~~~~lq~n~~~~~ekr~r--k~p~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~ 90 (244)
T cd07595 13 LSDELLQIEKRVEAVKDACQNIHKKLISCLQGQSGEDKDKRLK--KLPEYGLAQSMLESSKELPDDSLLGKVLKLCGEAQ 90 (244)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCCcHHHHhhhhc--cCcHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 567787777777666666655554222 2222111 1123345555443332 2334999999999999
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
.+++..... +...+...|.+||...+. ..++++.+.|.++. ...-.++.++..+.+-...+ +
T Consensus 91 ~~ia~~~~~-~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe----~~RLd~D~~k~r~~ka~k~~-~---------- 152 (244)
T cd07595 91 NTLARELVD-HEMNVEEDVLSPLQNILE--VEIPNIQKQKKRLS----KLVLDMDSARSRYNAAHKSS-G---------- 152 (244)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh----hhhHHHHHHHHHHHhccccc-c----------
Confidence 999988665 444566789999998774 34445555444322 22223333333332211110 0
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
+.....|++.+ +.+++.++.+|+..++.+..+|..|- .+..++-.-|.+|+..|++||+++++
T Consensus 153 ---------~~~~~~K~~~l-------~eE~e~ae~k~e~~~e~~~~~M~~~l-~~E~e~~~~l~~lv~aQl~YH~~a~e 215 (244)
T cd07595 153 ---------GQGAAAKVDAL-------KDEYEEAELKLEQCRDALATDMYEFL-AKEAEIASYLIDLIEAQREYHRTALS 215 (244)
T ss_pred ---------ccccccccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112344444 44556666777777777788888875 55899999999999999999999987
Q ss_pred cc
Q psy18202 352 RG 353 (357)
Q Consensus 352 ~W 353 (357)
+-
T Consensus 216 ~L 217 (244)
T cd07595 216 VL 217 (244)
T ss_pred HH
Confidence 64
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and |
| >cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00042 Score=59.80 Aligned_cols=185 Identities=12% Similarity=0.208 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC--ch-hHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY--EP-QLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~--E~-~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++...+..++..+.++.+....++....+++.+...|+..+..++.. .. -++.++.+++.++..+...... +.+
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~-L~~ 82 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTI-LFD 82 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 4567788899999999999999999999999999999999999888532 22 2789999999999999887665 666
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
.....+..||..+. ..+..+|+.=++=++ +.+ +.-..+.|....+
T Consensus 83 q~~~~l~~~L~~F~k~dl~~vke~kk~FdK-------~s~---~~~~aL~K~~~~~------------------------ 128 (200)
T cd07638 83 QAQRSIKAQLQTFVKEDLRKFKDAKKQFDK-------VSE---EKENALVKNAQVQ------------------------ 128 (200)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HhH---HHHHHHHHhccCC------------------------
Confidence 66667777777653 233444443332222 221 1222223322110
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
..| ..+++++..++..+...+....-....-|...+..|.-+|-+.|..|...|+.|+++..+.
T Consensus 129 -k~k----~~e~eEa~~~l~~~r~~F~~~~ldYv~~ln~vq~kKkfe~le~ll~~m~a~~tff~qG~el 192 (200)
T cd07638 129 -RNK----QHEVEEATNILTATRKCFRHIALDYVLQINVLQSKRRSEILKSMLSFMYAHLTFFHQGYDL 192 (200)
T ss_pred -cCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 011 2455677777888888888777777778888889999999999999999999999987765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00045 Score=59.59 Aligned_cols=186 Identities=12% Similarity=0.195 Sum_probs=136.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-Cch--hHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-YEP--QLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-~E~--~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
+.++..-++.++..|+++.+....++..-++++.+-..|+..+..++. +.. .++.+|.+++..+..+...... +.+
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~-Ll~ 82 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAE-LLE 82 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 456667788899999999999999999999999999999999999886 322 2889999999999988777655 555
Q ss_pred hhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
+....+..+|..+. ..+..+|++=++=++....|+.+ |.|. .++..
T Consensus 83 ~~~~~l~~~L~~F~k~dl~~vKe~kK~FdK~s~~~d~a---l~K~----~~~~k-------------------------- 129 (200)
T cd07639 83 ATQFSFKQQLQLLVKEDLRGFRDARKEFERGAESLEAA---LQHN----AETPR-------------------------- 129 (200)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhHhhcchhHHHH---HHHH----hhccc--------------------------
Confidence 55567777777554 35566776666656655555543 2111 11110
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.| ..+++++..++.....-|....-....-|...+..|..++-+.|..|...+..|+++..++-
T Consensus 130 --~k----~~e~~Ea~~~l~~~R~~F~~~~ldYV~~in~iq~kKkfefle~ll~~m~a~~tfF~qG~ell 193 (200)
T cd07639 130 --RK----AQEVEEAAAALLGARATFRDRALDYALQINVIEDKKKFDILEFMLQLMEAQASFFQQGHEAL 193 (200)
T ss_pred --cc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 12556777777877777777777777788888889999999999999999999999887654
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.8e-07 Score=70.64 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=57.5
Q ss_pred cceeecchhhHHHHHHHHHHhCCCCCCCCCCCcccc-----ch------hhhcCC---HHHHHHHHHHHHHHHHHHHcCc
Q psy18202 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSL-----LE------HLNRYS---KEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 7 ~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~-----~~------~~~~~~---~~fie~R~~~L~~fL~~i~~hp 72 (357)
.|.|.|||.+|..||..|...=...-|||+|..... .+ .+.+-+ .+=+..|++.||.||++|+..|
T Consensus 36 ~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~~~~~~~~~sr~kqLE~YLn~LL~~~ 115 (130)
T cd07297 36 TWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTDREASRRTASKPKYLENYLNNLLENS 115 (130)
T ss_pred EEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCCchhhhhhhhHHHHHHHHHHHHhcch
Confidence 689999999999999999874434444555522210 00 011111 2335678999999999999999
Q ss_pred cccCChhhhccccc
Q psy18202 73 VLSVNSHAIIFLTA 86 (357)
Q Consensus 73 ~L~~~~~~~~FL~~ 86 (357)
.-++.+....||+.
T Consensus 116 ~YRn~~atleFLeV 129 (130)
T cd07297 116 FYRNYHAMMEFLAV 129 (130)
T ss_pred hhcCChhheeeeec
Confidence 99999999999974
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor |
| >cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00044 Score=61.09 Aligned_cols=190 Identities=13% Similarity=0.163 Sum_probs=116.1
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----hh--------------HHHHHHHHHHHHHHHHhhCC---chh
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYK----ER--------------KDYVSEAHQFAIVLNTWAGY---EPQ 179 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k----~~--------------~~l~~~~~~~~~~~~~l~~~---E~~ 179 (357)
..+.|+.|.++...++.....+..+.+......+ .| ..+. ....+|.++..-|.. +..
T Consensus 12 kTe~d~df~~le~~~d~~~~~~e~i~~~~~~~lqpNp~~r~~~~~~~k~~~~~~~~~~-~~e~Lg~~M~~~g~~lg~~S~ 90 (229)
T cd07594 12 KTEYDAHFENLLQRADKTKVWTEKILKQTEAVLQPNPNVRVEDFIYEKLDRKKPDRLS-NLEQLGQAMIEAGNDFGPGTA 90 (229)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHhhcccCCCCC-cHHHHHHHHHHHHhhCCCCCc
Confidence 3456777877777666666655555444433331 00 0011 123455555554421 234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKD 259 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~ 259 (357)
++.+|..+|++..+++.+... +...+...|.+||+.++. ..++++.+.|.++ +...-.++.++..+.+-..
T Consensus 91 ~g~aL~~~g~a~~kia~~~~~-~~~~i~~~fl~pL~~~l~--~dik~i~k~RKkL----e~rRLd~D~~k~r~~kAk~-- 161 (229)
T cd07594 91 YGSALIKVGQAQKKLGQAERE-FIQTSSSNFLQPLRNFLE--GDMKTISKERKLL----ENKRLDLDACKTRVKKAKS-- 161 (229)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcCC--
Confidence 999999999999999988655 555566789999998765 3445555555432 2222233333333322111
Q ss_pred CCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 260 SDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
.++ +..++.+++.++.+|+.-++.+..=+..+... ..+-..-|.+|+
T Consensus 162 -------------------------~~~-------~~~~e~elr~Ae~kF~~~~E~a~~~M~~i~~~-~~~~~~~L~~lv 208 (229)
T cd07594 162 -------------------------AEA-------IEQAEQDLRVAQSEFDRQAEITKLLLEGISST-HANHLRCLRDFV 208 (229)
T ss_pred -------------------------ccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHH
Confidence 111 23456667777888888887777777777533 467788899999
Q ss_pred HHHHHHHHHHHhcc
Q psy18202 340 DQQIAYYQQRSDRG 353 (357)
Q Consensus 340 ~~qi~~~~~~~~~W 353 (357)
..|++||+++.++-
T Consensus 209 ~AQl~Yh~q~~e~L 222 (229)
T cd07594 209 EAQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. |
| >cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2 | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00054 Score=60.91 Aligned_cols=197 Identities=13% Similarity=0.125 Sum_probs=112.8
Q ss_pred cC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhH-----HHHHHHHHHHHHHHHhhCCchhHHHHHHH
Q psy18202 122 RH-HHSEFEQFSQYISNLYEKISAFEKIGTRLY---------KERK-----DYVSEAHQFAIVLNTWAGYEPQLSSVIRQ 186 (357)
Q Consensus 122 ~e-~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---------k~~~-----~l~~~~~~~~~~~~~l~~~E~~l~~~l~~ 186 (357)
.+ .|+.|.++...++.....+..+.+.+.... ++.+ -|+..|.+.|..| +.+..++.+|..
T Consensus 10 Te~ld~~~~~le~r~D~~k~~~~~i~kk~~~~LQpnp~~r~ekr~~k~P~~~L~q~M~~~g~el----g~~s~lg~aL~~ 85 (248)
T cd07619 10 TEVLSEDLLQVEKRLELVKQVSHSTHKKLTACLQGQQGVDADKRSKKLPLTTLAQCMVEGAAVL----GDDSLLGKMLKL 85 (248)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhccCCCHHHHHHHHHHHHHhc----CCCchHHHHHHH
Confidence 45 377888887777766665555544333221 1111 1444444444433 123449999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCC
Q psy18202 187 VSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPT 266 (357)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~ 266 (357)
+|.+..+++..... +-..+...|.+||+.+.. ..++++.+.|.++ +...-.++.+|..+..-... ++
T Consensus 86 ~gea~~kla~a~~~-~d~~i~~~fl~PL~~~le--~dlk~I~k~RK~L----e~~RLD~D~~K~r~~~a~~~----~~-- 152 (248)
T cd07619 86 CGETEDKLAQELIL-FELQIERDVVEPLYVLAE--VEIPNIQKQRKHL----AKLVLDMDSSRTRWQQSSKS----SG-- 152 (248)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhhHhhHHHHHHHHHhcccc----cc--
Confidence 99999999987655 444556789999997765 4556666666542 22333444444433221110 00
Q ss_pred CCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 267 SSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 267 ~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
+ +.+ ..+...+.+.++. +++.++++++...+....++-.|- .+..+.-+-|.+|+..|++||
T Consensus 153 --~------~~~--~~~~~~k~e~lr~-------e~E~ae~~~e~~kd~~~~~m~~~l-~~e~e~~~~l~~Lv~AQleYH 214 (248)
T cd07619 153 --L------SSN--LQPTGAKADALRE-------EMEEAANRMEICRDQLSADMYSFV-AKEIDYANYFQTLIEVQAEYH 214 (248)
T ss_pred --c------ccc--ccCCCCccHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 0 000 0011123344444 445555555555455556666664 446777777999999999999
Q ss_pred HHHHhcc
Q psy18202 347 QQRSDRG 353 (357)
Q Consensus 347 ~~~~~~W 353 (357)
++.+++-
T Consensus 215 r~A~eiL 221 (248)
T cd07619 215 RKSLELL 221 (248)
T ss_pred HHHHHHH
Confidence 9988764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG1259|consensus | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.3e-07 Score=79.75 Aligned_cols=62 Identities=31% Similarity=0.446 Sum_probs=51.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH 71 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h 71 (357)
.-+|.|.|||+||..||+.|...-. +----||||..+ |+..+.|+|+|+..|+.||+.++..
T Consensus 38 ~~ew~v~~ry~df~~lheklv~e~~-i~k~llppkk~i----g~~~~s~~e~r~~~leiylq~ll~~ 99 (490)
T KOG1259|consen 38 KVEWLVERRYRDFANLHEKLVGEIS-ISKKLLPPKKLV----GNKQPSFLEQRREQLEIYLQELLIY 99 (490)
T ss_pred ceeeeehhhhhHHHHHHHHhhhhhe-eccccCCchhhc----CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999986542 222347889887 7789999999999999999998754
|
|
| >cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1 | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00089 Score=59.29 Aligned_cols=205 Identities=11% Similarity=0.151 Sum_probs=112.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHHHHhhCC---chhHHHHHHHHHHHH-
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLY---------KERKDYVSEAHQFAIVLNTWAGY---EPQLSSVIRQVSKAV- 191 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~---------k~~~~l~~~~~~~~~~~~~l~~~---E~~l~~~l~~~~~~~- 191 (357)
++.|.++...++.+...+..+.+.+.... ++.+.+ ....+|.++..-+.- +..++.+| .++..+
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i~kkl~~~LQpn~~~~aekr~kKl--pe~~Ls~~M~es~keLg~dS~lg~aL-e~~~~~e 90 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLIHKKLQGCLQSQPGLEAEKRMKKL--PLMALSISMAESFKDFDAESSIRRVL-EMCCFMQ 90 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhhhc--cHhHHHHHHHHHHhhCCCcchHHHHH-HHHHHHH
Confidence 55677776666665555544433322111 111111 123344444333221 22388888 777777
Q ss_pred HHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcc
Q psy18202 192 DTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTAT 271 (357)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~ 271 (357)
..++..... +-..+...|.+||..... .-++++.+.|.++.. ..-+++.+|....+-... ++. |++...+
T Consensus 91 ~~LA~~l~~-~E~~Ve~~vl~PL~~L~e--~dL~~I~k~rKkL~k----~~LD~D~~K~R~~~a~k~-s~~--~~~~~~~ 160 (257)
T cd07620 91 NMLANILAD-FEMKVEKDVLQPLNKLSE--EDLPEILKNKKQFAK----LTTDWNSAKSRSPQAAGR-SPR--SGGRSEE 160 (257)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhHH--hhHHHHHHHHHHHHh----HHhhHHHHHHHHHHhhcc-ccC--Ccccccc
Confidence 777777555 444556789999987765 567788887766433 333444444433322111 011 1100000
Q ss_pred cCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 272 SSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 272 ~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
..+ ..+.....|++.++.+ ++.+..+++...+....++=.|- .+..++.+-|..|++.|.+||++.+.
T Consensus 161 ~~~----~~~~~~~~K~~~lkeE-------~eea~~K~E~~kd~~~a~Mynfl-~kE~e~a~~l~~lveaQ~~YHrqsl~ 228 (257)
T cd07620 161 VGE----HQGIRRANKGEPLKEE-------EEECWRKLEQCKDQYSADLYHFA-TKEDSYANYFIRLLELQAEYHKNSLE 228 (257)
T ss_pred ccc----cccccccccccccHHH-------HHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011112454455544 44555556555566667888885 66899999999999999999999988
Q ss_pred ccc
Q psy18202 352 RGN 354 (357)
Q Consensus 352 ~W~ 354 (357)
+-+
T Consensus 229 ~Le 231 (257)
T cd07620 229 FLD 231 (257)
T ss_pred HHH
Confidence 753
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >KOG3784|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.6e-06 Score=80.20 Aligned_cols=78 Identities=24% Similarity=0.353 Sum_probs=71.5
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.+.+.+||+.+..||+.|..++-+..+|+.|+|..+ .+++.-++.||..|+.||+.+++||.++.+..+..||.
T Consensus 26 G~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p~k~~f-----~L~~~~~~~rr~~leqylqa~~q~~~l~~s~~~~~fL~ 100 (407)
T KOG3784|consen 26 GRQHGSVRYSQLVELHEQLKKHFYDYCLPQFPPKKLF-----KLTPQQLDSRRRGLEQYLQAVCQDPVLARSELVQKFLM 100 (407)
T ss_pred ceeEEEEehHHHHhHHHHHHHHhhcccCCCCCccccc-----CCChhhhHHHHHHHHHHHHHHhcCccccchhhhhHHHH
Confidence 4567889999999999999999999999999999987 46788899999999999999999999999999999997
Q ss_pred ccc
Q psy18202 86 AKL 88 (357)
Q Consensus 86 ~~~ 88 (357)
...
T Consensus 101 ~~q 103 (407)
T KOG3784|consen 101 RAQ 103 (407)
T ss_pred hcc
Confidence 653
|
|
| >cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00057 Score=59.90 Aligned_cols=141 Identities=9% Similarity=0.123 Sum_probs=94.9
Q ss_pred HHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 164 HQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 164 ~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
..+|.++..-|. .+..++.+|..+|.+..+++..... +.......|.+||.... -..++++.+.|.+
T Consensus 67 ~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~-~~~~v~~~fl~pL~~~l--~~dik~i~k~RKk------- 136 (223)
T cd07615 67 GLLGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDS-LDINVKQNFIDPLQLLQ--DKDLKEIGHHLKK------- 136 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-------
Confidence 345555544432 1334999999999999999988665 55566678999998552 2444555554433
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El 320 (357)
|+.+|-..+-..... ++ ..+.+++.++.+|+..++.+...+
T Consensus 137 ----Le~rRLd~D~~K~r~-~k----------------------------------~~~eE~~~A~~kfees~E~a~~~M 177 (223)
T cd07615 137 ----LEGRRLDFDYKKKRQ-GK----------------------------------IPDEEIRQAVEKFEESKELAERSM 177 (223)
T ss_pred ----HHHHHHHHHHHHHcC-CC----------------------------------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222111110 00 015567888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 321 ERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 321 ~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..|. +...+.-.-|..|++.|++||++++++-+
T Consensus 178 ~n~l-e~e~e~~~~L~~lv~AQl~Yh~~a~eiL~ 210 (223)
T cd07615 178 FNFL-ENDVEQVSQLSVLIEAALDYHRQSTEILE 210 (223)
T ss_pred HHHH-HcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9996 45789999999999999999999988743
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e |
| >cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1 | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00092 Score=59.58 Aligned_cols=194 Identities=11% Similarity=0.131 Sum_probs=117.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHH
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRL---------YKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAVD 192 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l---------~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~ 192 (357)
++.|.++...++.....+..+.+.+... -+.++.+ ....+|..+..-+. .+..++.+|...|.+..
T Consensus 14 ~~~~~~le~r~D~~k~~~~~i~k~~~~~lqpnp~~r~ek~~kk~--p~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~ 91 (246)
T cd07618 14 SEDLLQIERRLDTVRSVSHNVHKRLIACFQGQVGTDAEKRHKKL--PLTALAQNMQEGSAQLGEESLIGKMLDTCGDAEN 91 (246)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4477777777666655555444333222 1222222 13344444443322 13338899999999999
Q ss_pred HHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc
Q psy18202 193 TTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATS 272 (357)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~ 272 (357)
++++.... .-..+...|.+||..++. ..++++.+.|.++ +...-.++.+|..+.+-... .
T Consensus 92 kla~~~~~-~d~~ie~~fl~PL~~~le--~dlk~I~K~RkkL----e~~RLD~D~~K~r~~~a~~~-----~-------- 151 (246)
T cd07618 92 KLAFELSQ-HEVLLEKDILDPLNQLAE--VEIPNIQKQRKQL----AKLVLDWDSARGRYNQAHKS-----S-------- 151 (246)
T ss_pred HHHHHHHh-hHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHH----HhHHhhHHHHHHHHHhcccc-----C--------
Confidence 99966433 222344589999988765 5566777766553 23334455555444322111 0
Q ss_pred CCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 273 STNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 273 ~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
|.+ ..+...|+..|+.++++++.+++.+++.+.. ++-.|- .+..++-+.|.+|+..|++||++.+++
T Consensus 152 ---~~~--~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~-------dm~~~l-~~e~e~~~~l~~lv~aQ~eYHr~a~e~ 218 (246)
T cd07618 152 ---GTN--FQAMPSKIDMLKEEMDEAGNKVEQCKDQLAA-------DMYNFA-SKEGEYAKFFVLLLEAQADYHRKALAV 218 (246)
T ss_pred ---ccc--cccccchhhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0122367777787777777777777766533 666663 778999999999999999999998876
Q ss_pred c
Q psy18202 353 G 353 (357)
Q Consensus 353 W 353 (357)
-
T Consensus 219 L 219 (246)
T cd07618 219 I 219 (246)
T ss_pred H
Confidence 4
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation. |
| >cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0014 Score=57.83 Aligned_cols=140 Identities=11% Similarity=0.178 Sum_probs=94.4
Q ss_pred HHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 164 HQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 164 ~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
..+|.++..-|. .+..++.+|..+|++..+++.+... +...+...|.+||+... -..++++.+.|.++..
T Consensus 67 ~~Lg~~M~~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~-~d~~v~~~fl~pL~~~l--~~dik~i~k~RKkLe~---- 139 (223)
T cd07592 67 GLLGEVMLKYGRELGEDSNFGQALVEVGEALKQLAEVKDS-LDDNVKQNFLDPLQQLQ--DKDLKEINHHRKKLEG---- 139 (223)
T ss_pred cHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----
Confidence 345555544432 1234999999999999999988655 55556678999988652 2445555555544221
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 241 CGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El 320 (357)
..-.++.++... . + ..+.+++.++.+|+..++.+...+
T Consensus 140 rRLdyD~~k~k~---~-----k----------------------------------~~eeEl~~Ae~kfe~s~E~a~~~M 177 (223)
T cd07592 140 RRLDYDYKKRKQ---G-----K----------------------------------GPDEELKQAEEKFEESKELAENSM 177 (223)
T ss_pred HHHHHHHHHHhc---c-----c----------------------------------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222111 0 0 024667888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 321 ERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 321 ~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..|-. ...+..+.|..|++.|++||+++.++-
T Consensus 178 ~~il~-~e~e~~~~L~~lveAQl~Yh~~~~e~L 209 (223)
T cd07592 178 FNLLE-NDVEQVSQLSALVEAQLDYHRQSAEIL 209 (223)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99974 468999999999999999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra |
| >PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0034 Score=55.61 Aligned_cols=194 Identities=9% Similarity=0.113 Sum_probs=126.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
.|++++.--+-+.........+.+.++.+..+-..++.....||..|..+|.-|++ ++..+..+|++...++..-..
T Consensus 31 ~D~eL~~kle~l~~~~~~y~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~e~~~~l~~~f~~~~~~~~~~~~~~~~- 109 (229)
T PF06456_consen 31 VDDELDAKLELLRDTQRTYRGLLKHARAYQNRLQALSQTQKELGDFFAELGVREKSPALGEEFSANGEAQRSLAKQGET- 109 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-CCGHHHHHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46677766677777788888899999999999999999999999999999986654 899999999888777654222
Q ss_pred hhhhhhhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDY-LMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~-~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+. .|...+.-+ -+-+.-.+.++++-+.+-.+| ...+..++.+.... + | . .
T Consensus 110 L~~~l~-~~~~~l~Tf~~kaI~DT~~Tik~ye~aR~EY-------~ay~~~lke~~~e~-~--~-~-------~------ 164 (229)
T PF06456_consen 110 LLKALK-RFLSDLNTFRNKAIPDTLLTIKKYEDARFEY-------DAYRLWLKEMSDEL-D--P-D-------T------ 164 (229)
T ss_dssp HHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--T-S--T-S-------S------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhccc-C--c-h-------h------
Confidence 222221 222222222 112222333344444444444 44444444443210 0 0 0 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.....+.+ ..+..+..++.+|+.....+..=++-....|..+|...|.-|...-..|+.++.+
T Consensus 165 -~~~~~~~r-------~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~~~ 227 (229)
T PF06456_consen 165 -AKQEPKFR-------VAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGNAQ 227 (229)
T ss_dssp -TTCHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hcccchHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHh
Confidence 00013333 3344567888899999999999999999999999999999999999999988765
|
The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D. |
| >cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0043 Score=53.32 Aligned_cols=192 Identities=11% Similarity=0.125 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
.+++.--+.+.........+.+.++++..+-..++.+...||..|..+|.-+++++..+..+++....++..-.
T Consensus 2 ~eLeaklE~L~~~q~~Y~~ll~~~~~l~~~~~~l~qtq~~Lg~~f~~l~~k~p~l~~af~~~aet~k~l~kng~------ 75 (201)
T cd07660 2 LELEAQIEVLRDTQRKYESVLRLARALASQFYQMLQTQKALGDAFADLSQKSPELQEEFTYNAETQKLLCKNGE------ 75 (201)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhHH------
Confidence 34444455566777777888888999999999999999999999999999888888888877777666554322
Q ss_pred hhhhcchhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc
Q psy18202 206 FHEHNSHPMKDYLMYIDAVKQ-VLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284 (357)
Q Consensus 206 ~~~~l~~~l~~~~~~~~a~k~-~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (357)
.+..+|..+...+.-+.+ ++..-..-...|+.+.-+....+...+.+..+.. + ...
T Consensus 76 ---~Ll~al~~f~s~l~T~~~kai~DT~lTI~~ye~aR~EYdayr~D~ee~~~~~~---------------~-----~~~ 132 (201)
T cd07660 76 ---TLLGALNFFVSSLNTLVNKTMEDTLMTVKQYESARIEYDAYRNDLEALNLGPR---------------D-----AAT 132 (201)
T ss_pred ---HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhhHhHHHHhccHHHcccCCC---------------c-----cch
Confidence 233333333333322220 1111111222344444444444444454443300 0 001
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..|++. ++.++..++++|+.....+..=++-....|..+|..-|.-|......|+..+.+.-
T Consensus 133 l~r~~~-------~q~~~~~~k~kf~KLR~DV~~Kl~lLeenrv~vm~~QL~~f~~a~~ay~sgn~~~L 194 (201)
T cd07660 133 SARLEE-------AQRRFQAHKDKYEKLRNDVSVKLKFLEENKVKVMHKQLLLFHNAISAYFSGNQKQL 194 (201)
T ss_pred HhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 134443 55667888899999999999999999999999999999999999999988776653
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im |
| >cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00053 Score=60.17 Aligned_cols=181 Identities=10% Similarity=0.157 Sum_probs=109.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-------------h---H--HHHHHHHHHHHHHHHhhCC---c
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYK----E-------------R---K--DYVSEAHQFAIVLNTWAGY---E 177 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k----~-------------~---~--~l~~~~~~~~~~~~~l~~~---E 177 (357)
+-|+.|.++...++.....+..+.+.+..... . + + .+-.....+|.++..-|.. +
T Consensus 4 ~ld~~f~~le~~~d~t~~~~~~l~~~t~~~LqPNp~~R~~~~~~~~~~k~rg~~k~~~~p~~~~~Lg~~M~~~G~~lg~d 83 (223)
T cd07614 4 KLDDDFKEMEKKVDLTSKAVTEVLARTIEYLQPNPASRAKLTMLNTVSKIRGQVKNPGYPQSEGLLGETMIRYGKELGDE 83 (223)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccccCCCCCChHhHHHHHHHHHHhhCCCC
Confidence 45667777766666665555554443332221 0 0 0 0112234455555554422 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 178 PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 178 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
..++.+|..+|++..+++..... +...+...|.+||+.++. ..++++.+.|.++.. ..-.++-++. ++
T Consensus 84 S~~G~aL~~~G~a~~kia~~~~~-~d~~i~~~fl~pL~~~le--~dik~i~k~RKkLe~----rRLdyD~~K~---r~-- 151 (223)
T cd07614 84 SNFGDALLDAGESMKRLAEVKDS-LDIEVKQNFIDPLQNLCD--KDLKEIQHHLKKLEG----RRLDFDYKKK---RQ-- 151 (223)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHH---cC--
Confidence 34999999999999999988665 555566789999987752 333444444433211 1111221221 11
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
++. .++++..+..+|+..++.+...+..|. ....+..+-|..
T Consensus 152 ---~k~----------------------------------~eeelr~a~ekFees~E~a~~~M~~il-~~e~e~~~~L~~ 193 (223)
T cd07614 152 ---GKI----------------------------------PDEELRQAMEKFEESKEVAETSMHNLL-ETDIEQVSQLSA 193 (223)
T ss_pred ---CCC----------------------------------chHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHH
Confidence 000 024455566688888888888999886 447889999999
Q ss_pred HHHHHHHHHHHHHhcc
Q psy18202 338 IADQQIAYYQQRSDRG 353 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W 353 (357)
|++.|++||+++.++-
T Consensus 194 lveAQl~Yh~qa~eiL 209 (223)
T cd07614 194 LVDAQLDYHRQAVQIL 209 (223)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated |
| >cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2 | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0054 Score=53.11 Aligned_cols=183 Identities=15% Similarity=0.164 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCchh----HHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 132 SQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEPQ----LSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 132 ~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~~----l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
..-+++....+++|.+....++..-+.++.+...|+..+..++ ..+.+ ++..|..++..+..+.+.... +
T Consensus 8 e~~le~~~k~i~kLiK~c~~~i~a~k~~~~a~~~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~-L 86 (207)
T cd07635 8 EAELERTNRFIKELLKDGKNLIAATKSLSAAQRKFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREI-M 86 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3345555555666666666666666677777777777777776 22221 567788888888877766554 5
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..+.. .+..+|+.-+.=++ ..+.+.......-.|... +.
T Consensus 87 ~~~~~~~l~~pL~~F~kedl~~~Ke~KK~FdK-------~se~~~~Al~K~~~ls~k---kk------------------ 138 (207)
T cd07635 87 ALNVTETLIKPLERFRKEQLGAVKEEKKKFDK-------ETEKNYSLLEKHLNLSAK---KK------------------ 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHhccCC---CC------------------
Confidence 55555566777765532 23333333332222 222222222221122111 00
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+.++.+++..+......+...+=...--|...+..|.-+|.+.|..|...++.|+++..++-
T Consensus 139 ----------~~e~~EA~~~l~~~r~~F~~~sLdYv~qin~lQ~rKKfe~le~ll~~m~a~~tffhqG~el~ 200 (207)
T cd07635 139 ----------EPQLQEADVQVEQNRQHFYELSLEYVCKLQEIQERKKFECVEPMLSFFQGVFTFYHQGYELA 200 (207)
T ss_pred ----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12445667777777777777777777788888899999999999999999999999877653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote |
| >cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0063 Score=52.69 Aligned_cols=185 Identities=15% Similarity=0.180 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CCchh----HHHHHHHHHHHHHHHHHHHHH
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GYEPQ----LSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~E~~----l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....-++++...++.+.+....++...++++.+...|+..+..++ ..+.+ ++.+|..++..+..+.+....
T Consensus 6 ~~E~~le~~~k~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~~~L~kF~~~L~ei~~~r~~ 85 (207)
T cd07636 6 SHEAELDKTNKFIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIARSLQEFAAVLRNLEDERTR 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777777777788888888776 33222 778999999999988877555
Q ss_pred HhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSL 279 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~ 279 (357)
+.+.....+..+|..+.. .+..+|+.-++=++.-..|+. . ++|....++.+.
T Consensus 86 -L~~qa~~~l~~~L~~F~kedi~~~Ke~kK~FdK~se~~~~-------a---l~k~~~ls~k~K---------------- 138 (207)
T cd07636 86 -MIENASEVLITPLEKFRKEQIGAAKEAKKKYDKETEKYCA-------V---LEKHLNLSSKKK---------------- 138 (207)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHH-------H---HHHHhcCcccCC----------------
Confidence 655555567777765532 334444444433333322222 2 222222110000
Q ss_pred cCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 280 WKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 280 ~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..++++++..+......|..++-...--|...+..|.-++.+.|..|...+.-|+.+..++-
T Consensus 139 ------------~~~~eEA~~~L~~~r~~F~~~sLdYV~qi~~vq~rKkfefle~llsfm~a~~tffhqG~el~ 200 (207)
T cd07636 139 ------------ESQLHEADSQVDLVRQHFYEVSLEYVFKVQEVQERKMFEFVEPLLAFLQGLFTFYHHGYELA 200 (207)
T ss_pred ------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12466667777777777777777777788888999999999999999999999999877653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o |
| >cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1 | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0035 Score=54.96 Aligned_cols=125 Identities=10% Similarity=0.131 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 179 QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 179 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.++.+|..+|.+..+++..... +...+...|.+||..+. -..+|++.+.|.++.. ..-+++.++. ++.
T Consensus 85 ~~G~aL~~~G~A~~kla~~~~~-~~~~i~~~fl~PL~~~~--~~dik~i~k~RKkLe~----rRLd~D~~K~---r~~-- 152 (223)
T cd07613 85 NFGPALGDVGEAMRELSEVKDS-LDMEVKQNFIDPLQNLH--DKDLREIQHHLKKLEG----RRLDFDYKKK---RQG-- 152 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HHHhHHHHHH---hCC--
Confidence 3999999999999999988665 55566678999998763 3455555555544221 1112222211 110
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
+ + .+.+++.++.+|+..++.+...+..|... ..+.-+-|.+|
T Consensus 153 ---k-------------------------~---------~eeElr~A~~kFees~E~a~~~M~n~l~~-e~e~~~~L~~f 194 (223)
T cd07613 153 ---K-------------------------I---------PDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQLSAL 194 (223)
T ss_pred ---C-------------------------C---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHH
Confidence 0 0 15667888888988888888888888644 45777799999
Q ss_pred HHHHHHHHHHHHhcc
Q psy18202 339 ADQQIAYYQQRSDRG 353 (357)
Q Consensus 339 a~~qi~~~~~~~~~W 353 (357)
++.|++||+++.++-
T Consensus 195 veAQl~Yh~qa~eiL 209 (223)
T cd07613 195 VQAQLEYHKQATQIL 209 (223)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i |
| >cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0068 Score=52.43 Aligned_cols=189 Identities=15% Similarity=0.178 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEH 209 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (357)
++.=...|.++.+.++.|..+-+....+-..|..++..||.. +++++.+|..+|.....+..+... +.++....
T Consensus 11 l~~d~~~l~~~kk~~k~~~~sG~~yv~~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~-L~~~~~~~ 89 (215)
T cd07642 11 LDVDRTVLYKMKKSVKAIHTSGLAHVENEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKN-LVQNMNNI 89 (215)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333345667788888888888888888888888888888863 344999999999999999988776 77777778
Q ss_pred cchhHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 210 NSHPMKDYLM-YIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 210 l~~~l~~~~~-~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
+.-|+..++. .+..+| ++=+.=+++..+|+.+..... +.+...+ |. .|.+ +
T Consensus 90 I~~pl~s~lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~e-----k~~r~~~---K~-----------~~~~--------~ 142 (215)
T cd07642 90 ITFPLDSLLKGDLKGVKGDLKKPFDKAWKDYETKVTKIE-----KEKKEHA---KM-----------HGMI--------R 142 (215)
T ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----hhhhccC---Cc-----------cccc--------h
Confidence 8889988888 888887 666556777777776532111 1111111 10 0110 0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
. +..=+++.++.+.....|....-.-.--+.-.+..+..++-..+..|-..|..|+++.++.-+
T Consensus 143 ~---e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~kk~~eiL~~l~~~~~AQ~tfF~qG~k~le 206 (215)
T cd07642 143 T---EISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKIKKGVDLLQNLIKYFHAQCNFFQDGLKAVE 206 (215)
T ss_pred h---ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000012223333344443333222222344466778899999999999999999999877643
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i |
| >cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.008 Score=51.84 Aligned_cols=193 Identities=10% Similarity=0.103 Sum_probs=125.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhH-HHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQL-SSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l-~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
.+++.--+.+.........+.+.++++..+-..++.....||..|..+|.-++.+ +..+..+|++...++..-.
T Consensus 2 ~eL~akle~l~~~~~~y~~Ll~~~~~~~~~~~~l~q~q~~lG~~f~~l~~~~~~~a~~~f~~~~~a~r~~~k~g~----- 76 (203)
T cd00011 2 LELELQLELLRETKRKYESVLQLGRALTAHLYSLSQTQHALGDAFADLSQKDPELAGEEFGYNAEAQKLLCKNGE----- 76 (203)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhHH-----
Confidence 3444444555666667778888888899899999999999999999999999887 5778888887766654211
Q ss_pred hhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 205 PFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
.+..+|..+...+.-+. .++..-..-...|+.+.-+..........+... ..|
T Consensus 77 ----~ll~~l~~~~~~l~T~~~kai~DT~lTI~~ye~aR~EY~a~~l~~ke~~~e----~~~------------------ 130 (203)
T cd00011 77 ----TLLGAVNFFVSSINTLVTKAIEDTLLTVKQYEAARLEYDAYRLDLKELSLE----PRD------------------ 130 (203)
T ss_pred ----HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhHHHHHHHHHHhccc----CCc------------------
Confidence 23333333333333222 011111111223444444444444444443221 000
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+ +..-..++..+...++.++.+|+.....+..=|+--...|..+|...|..|...-..|+.++...
T Consensus 131 ~---~~~~~~k~r~~q~~~~~~k~kf~kLr~Dv~~Kl~lL~~~r~~~l~~qL~~~~~al~~y~~~~~~~ 196 (203)
T cd00011 131 D---TAGTRGRLRSAQATFQEHRDKFEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNTVSAYFAGNQKV 196 (203)
T ss_pred c---cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 0 00011245566678889999999999999999999999999999999999999999999887654
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is |
| >PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0099 Score=52.54 Aligned_cols=199 Identities=17% Similarity=0.201 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++...+..|...+.+..+..+.++.+...|..++..++. ...+|+.+|.++++....+...+.. +...+..
T Consensus 5 ~~~~~P~~e~lv~~~~kY~~al~~~~~a~~~f~dal~ki~~~A~~s~~s~~lG~~L~~~s~~~r~i~~~~~~-~~~~~~~ 83 (219)
T PF08397_consen 5 MEDFNPAWENLVSLGKKYQKALRAMSQAAAAFFDALQKIGDMASNSRGSKELGDALMQISEVHRRIENELEE-VFKAFHS 83 (219)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 33444555556655666666666666666666666666652 2334888888888888888766555 5666666
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.|..||...+..-... +-........++......|.|...+..++.....+ | +... .
T Consensus 84 ~li~pLe~~~e~d~k~--i~~~~K~y~ke~k~~~~~l~K~~se~~Kl~KK~~k--------------g----k~~~---~ 140 (219)
T PF08397_consen 84 ELIQPLEKKLEEDKKY--ITQLEKDYEKEYKRKRDELKKAESELKKLRKKSRK--------------G----KDDQ---K 140 (219)
T ss_dssp HTHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--------------C----TSCH---H
T ss_pred HHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------------C----Cccc---c
Confidence 7777777554433332 22233335668888888999888888888766211 0 1111 1
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 289 EKLSTAIPKLTSQLEICDEKLQT-ANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 289 ~~l~~~i~~le~~~~~~~~~~~~-i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
..+...+..++.....++.-... ..+.+.+|=.||- -++.--+-.....|-..-+...+..++-|..-|
T Consensus 141 ~~~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~lv~~~~~~~~~~~~~~~~~~~~L~~~~~~w~~~~ 212 (219)
T PF08397_consen 141 YELKEALQDVTERQSELEEFEKQSLREALLEERRRYCFLVEKHCSVVKSELAFHNEAVEHLQEKLDDWQELC 212 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 22222233343333333332222 3344557777775 233333333333333333445666777786443
|
In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A. |
| >cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0013 Score=58.69 Aligned_cols=134 Identities=13% Similarity=0.146 Sum_probs=81.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~ 256 (357)
+..++.+|..+|.+..+++..-.. +-..+...|.++|+.++. ..++++-+.|.++. ...=.++-+|..+.+..
T Consensus 102 ~s~lg~aL~~~g~a~~kIa~ar~~-~D~~I~~~Fl~pL~~~L~--~d~k~i~k~RKkle----~~RLd~D~~K~~~~ka~ 174 (242)
T cd07600 102 EDPLSKALGKYSDAEEKIAEARLE-QDQLIQKEFNAKLRETLN--TSFQKAHKARKKVE----DKRLQLDTARAELKSAE 174 (242)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence 344999999999999999986443 333444678888887755 23344444443321 11122233333222211
Q ss_pred ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 257 NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILL 336 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~ 336 (357)
.. ++- +++..+++.++++|...++....-|..+-. ..+.-+.|.
T Consensus 175 ~~---------------------------~k~-------~~~~~e~E~aEdef~~a~E~a~~~M~~il~--~~e~i~~L~ 218 (242)
T cd07600 175 PA---------------------------EKQ-------EAARVEVETAEDEFVSATEEAVELMKEVLD--NPEPLQLLK 218 (242)
T ss_pred cc---------------------------ccc-------cchHHHHHHHHHHHHHhHHHHHHHHHHHHh--hhHHHHHHH
Confidence 10 111 123344556666776666666666666633 377899999
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy18202 337 KIADQQIAYYQQRSDRG 353 (357)
Q Consensus 337 ~~a~~qi~~~~~~~~~W 353 (357)
.|+..|+.||+++.++-
T Consensus 219 ~fv~AQl~Yh~~~~e~L 235 (242)
T cd07600 219 ELVKAQLAYHKTAAELL 235 (242)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998764
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0094 Score=52.55 Aligned_cols=191 Identities=11% Similarity=0.112 Sum_probs=109.2
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHH-------------HHHHHHHHHHHHHHhhC---CchhH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLY----KERKD-------------YVSEAHQFAIVLNTWAG---YEPQL 180 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~----k~~~~-------------l~~~~~~~~~~~~~l~~---~E~~l 180 (357)
..+.|+.|.++...++.....+..+.+.+.... ..|.. .-.....+|.++..-|. .+..+
T Consensus 12 ~Te~d~df~~l~~~~d~t~~~~~~i~~~t~~~LqPNp~~r~e~~~~~k~~~~~~~~~~~~~~Lg~~M~~~g~~~g~~S~~ 91 (229)
T cd07616 12 KTELDAHLENLLSKAECTKHWTEKIMKQTEVLLQPNPNARIEEFVYEKLDRKAPSRMNNPELLGQYMIDAGNEFGPGTAY 91 (229)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCcH
Confidence 345577777776666655555444433322211 11111 11123345555444332 12349
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS 260 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~ 260 (357)
+.+|..+|++..+++.+... +.......|..||+..+.- .++++-+.|.++. ...=.++.++..+.+-...
T Consensus 92 G~aL~~~g~a~~kia~~~~~-~i~~~~~~Fl~PL~~~le~--dik~i~k~RKkLe----~rRLdyD~~K~r~~kAk~~-- 162 (229)
T cd07616 92 GNALIKCGETQKQIGTADRE-LIQTSAINFLTPLRNFIEG--DYKTITKERKLLQ----NKRLDLDAAKTRLKKAKVA-- 162 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcc--
Confidence 99999999999999988655 6555566899999987643 5566665554422 2222333333332221100
Q ss_pred CCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 261 DSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.-. ..+.+++.++++|+.-++.+..=+..+. ....+...-|.+|++
T Consensus 163 -------------------------~~~~-------~~e~elr~ae~efees~E~a~~~m~~i~-~~~~e~~~~L~~lv~ 209 (229)
T cd07616 163 -------------------------EARA-------AAEQELRITQSEFDRQAEITRLLLEGIS-STHAHHLRCLNDFVE 209 (229)
T ss_pred -------------------------hhhc-------chHHHHHHHHHHHHHHHHHHHHHHHhhh-hcChHHHHHHHHHHH
Confidence 0000 1244555666677666666655444554 346788899999999
Q ss_pred HHHHHHHHHHhcc
Q psy18202 341 QQIAYYQQRSDRG 353 (357)
Q Consensus 341 ~qi~~~~~~~~~W 353 (357)
.|++||+++.++-
T Consensus 210 AQl~Yh~~~~e~L 222 (229)
T cd07616 210 AQMTYYAQCYQYM 222 (229)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact |
| >cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1 | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.011 Score=50.90 Aligned_cols=191 Identities=15% Similarity=0.195 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----chhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----EPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 131 ~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
..+-++.++..|.++.+....|+.+-+.....-..|...+..||.. ++.++.+|.+++..+..+...+.. +.++
T Consensus 7 ~ee~l~~~e~~L~Kl~K~~kam~~SG~~yv~n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~-L~~~ 85 (215)
T cd07641 7 LEEALDQDRTALQKVKKSVKAIYNSGQDHVQNEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKN-LLQG 85 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 4455677778888888888888888888887778888888887643 455999999999999999988776 6666
Q ss_pred hhhhcchhHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCc
Q psy18202 206 FHEHNSHPMKDYL-MYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKST 283 (357)
Q Consensus 206 ~~~~l~~~l~~~~-~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 283 (357)
....+.-+|..++ +.+..+| ++=+.=++++-+|+.+.....+.+.+..|-. |.
T Consensus 86 ~~~~v~~~L~~flK~Dlr~~K~d~KK~FdK~~kDye~k~~K~ek~~r~~~K~~-------------------e~------ 140 (215)
T cd07641 86 LSHNVIFTLDSLLKGDLKGVKGDLKKPFDKAWKDYETKFTKIEKEKREHAKQH-------------------GM------ 140 (215)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHHhhhhhhcCcc-------------------cc------
Confidence 6666666766553 4556666 6666666777777665443333222111100 00
Q ss_pred cHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 284 SEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 284 ~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
...+..=.+..+..+....-|....=.-.--+.-.+..|..|+-..|.+|...|..|+++..+.
T Consensus 141 -----~r~e~~~~Eaa~~l~~~Rr~Fq~~a~dYllqin~iq~Kk~~eiLq~ll~~~hAq~tfFqqG~~~ 204 (215)
T cd07641 141 -----IRTEITGAEIAEEMEKERRLFQLQMCEYLIKVNEIKTKKGVDLLQNLIKYYHAQCNFFQDGLKT 204 (215)
T ss_pred -----hhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000012222222222222222111123334566788999999999999999999998765
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar |
| >cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.014 Score=50.58 Aligned_cols=179 Identities=13% Similarity=0.188 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-----CC--ch--hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy18202 136 SNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-----GY--EP--QLSSVIRQVSKAVDTTASLHKNLLIEPF 206 (357)
Q Consensus 136 ~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-----~~--E~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 206 (357)
+.-...|+++.+....++...++++.+...|+.++..++ .. ++ .++.++..++..+..+.+.... +.++.
T Consensus 12 ~~t~~~ik~liK~c~~li~A~k~~~~a~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~-L~~~~ 90 (207)
T cd07634 12 ERTNKFIKELIKDGSLLIGALRNLSMAVQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRR-LIQNA 90 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 333344445555555555555555555566666666554 11 22 2889999999999999887655 66666
Q ss_pred hhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccH
Q psy18202 207 HEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE 285 (357)
Q Consensus 207 ~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 285 (357)
...+..||..+. ..+..+|+.-++=++...+|.. .+.| --.+... +.
T Consensus 91 ~~~l~~pL~~f~k~dl~~vKe~kK~FDK~se~y~~---aleK----~l~l~~~---kk---------------------- 138 (207)
T cd07634 91 NDVLIAPLEKFRKEQIGAAKDGKKKFDKESEKYYS---ILEK----HLNLSAK---KK---------------------- 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchhHHHhHHHH---HHHH----HHhcccc---CC----------------------
Confidence 667777776554 3455666665555555555433 2211 1111111 10
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..++.+++.++......|....=...--|...+..|.-++-+.|..|...+..|+++..++-
T Consensus 139 ------~~~~~ea~~~l~~~R~~F~~~~ldYv~~i~~vq~kKkfefle~ll~~~~A~~tff~qG~el~ 200 (207)
T cd07634 139 ------ESHLQRADTQIDREHQNFYEASLEYVFKIQEVQEKKKFEFVEPLLAFLQGLFTFYHEGYELA 200 (207)
T ss_pred ------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 12455666777777777777777777778888889999999999999999999999887653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain |
| >cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2 | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.026 Score=49.32 Aligned_cols=182 Identities=15% Similarity=0.187 Sum_probs=101.5
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH----HhhHH----------H---HHHHHHHHHHHHHhhC---CchhH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLY----KERKD----------Y---VSEAHQFAIVLNTWAG---YEPQL 180 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~----k~~~~----------l---~~~~~~~~~~~~~l~~---~E~~l 180 (357)
..+.|+.|.++...++.....+.++.+.+.... ..|.. . -.....+|.++..-|. ....+
T Consensus 12 ~Teld~df~~l~~~~D~tk~~~~~i~~~t~~~LqPNp~~R~~~~~~~k~~~k~~~~~~~~~~Lg~~M~~~g~~~g~~s~~ 91 (220)
T cd07617 12 KTELDAHFENLLARADSTKNWTEKILRQTEVLLQPNPSARVEEFLYEKLDRKVPSRVTNAELLGQYMTEAANDFGPGTPY 91 (220)
T ss_pred CCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHhccCCCCCChHHHHHHHHHHHHHhcCCCCch
Confidence 345567777776666655555444433222211 01100 0 1123345555444332 12349
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS 260 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~ 260 (357)
+.+|..+|.+..+++.+... +.......|.+||+.++. ..+|++.+.|.+ |+.+|-..+...+
T Consensus 92 G~aL~~~g~a~~~ia~~~~~-~~~~v~~~fl~pL~~~l~--~dlk~i~k~RKk-----------Le~rRLd~D~~K~--- 154 (220)
T cd07617 92 GKTLIKVGETQKRLGAAERD-FIHTSSINFLTPLRNFLE--GDWKTISKERRL-----------LQNRRLDLDACKA--- 154 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-----------HHHHHHHHHHHHH---
Confidence 99999999999999988555 545556688888887654 233444444433 2222222221111
Q ss_pred CCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 261 DSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 261 ~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
|+.+ .+.+++.++.+|+.-++....=+..+... ..+-...|.+|++
T Consensus 155 --------------------------r~~k-------ae~elr~A~~kf~~~~E~a~~~M~~il~~-~~e~l~~L~~lv~ 200 (220)
T cd07617 155 --------------------------RLKK-------AEHELRVAQTEFDRQAEVTRLLLEGISST-HVNHLRCLHEFVE 200 (220)
T ss_pred --------------------------HHhc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHHHH
Confidence 1111 12356666677766666555555555433 4566778999999
Q ss_pred HHHHHHHHHHhcc
Q psy18202 341 QQIAYYQQRSDRG 353 (357)
Q Consensus 341 ~qi~~~~~~~~~W 353 (357)
.|++||+++.++-
T Consensus 201 AQl~Yh~q~~e~L 213 (220)
T cd07617 201 AQATYYAQCYRHM 213 (220)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998763
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified |
| >cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.042 Score=48.42 Aligned_cols=193 Identities=17% Similarity=0.197 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy18202 138 LYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNS 211 (357)
Q Consensus 138 l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (357)
..+.+.++...+....+..+.++.....|..+|..++.. -.+|+.+|.++++.+..+..-++. ....+...|.
T Consensus 18 ~~P~~~~li~~~~~Y~kal~a~~~a~~~~~dAl~kia~~A~~s~~sk~lG~~L~~i~~~~r~ie~~l~~-~~~~~~~~li 96 (223)
T cd07605 18 FNPVLRNLIKAGKKYQKALQALSQAAKVFFDALAKIGELASQSRGSQELGEALKQIVDTHKSIEASLEQ-VAKAFHGELI 96 (223)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 334444444444444444455555555555555555432 123777777777777666554443 3333344455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHH
Q psy18202 212 HPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291 (357)
Q Consensus 212 ~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l 291 (357)
.||..-+.. ..|.+-........+|.....+|+|...++.++...+.++++ ...+.+..+.
T Consensus 97 ~pLe~k~e~--d~k~i~~~~K~y~~E~K~~~~~l~K~~sel~Kl~KKs~~~~~-----------------~k~~~~l~~~ 157 (223)
T cd07605 97 LPLEKKLEL--DQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGT-----------------GKYQEKLDQA 157 (223)
T ss_pred HHhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----------------CcccHHHHHH
Confidence 555433221 122222333445667888888999988888887766322110 1112333333
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccC
Q psy18202 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA-------YYQQRSDRGNCNC 357 (357)
Q Consensus 292 ~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~-------~~~~~~~~W~~~~ 357 (357)
-.++...+.+++..... ...+.+.+|-.||- -|-+.+-.++...+. ..+..+..|..-|
T Consensus 158 ~e~v~~k~~ele~~~~~--~lr~al~EERrRyc-----~lv~~~c~v~~~e~~~~~~~~~~L~~~l~~w~~~~ 223 (223)
T cd07605 158 LEELNDKQKELEAFVSQ--GLRDALLEERRRYC-----FLVDKHCSVAKHEIAYHAKAMTLLSTRLPLWQELC 223 (223)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcC
Confidence 33333333333322222 34455667777763 333444444444444 4556777787665
|
Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me |
| >PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.082 Score=47.60 Aligned_cols=141 Identities=14% Similarity=0.218 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 141 KISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 141 ~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.|..|.+.-+.++.....++.+....+..+..||..|.+ |+....++|..+..++++... |.+.+..|..
T Consensus 58 ~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~---------~a~~~d~yR~ 128 (271)
T PF13805_consen 58 KLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQ---------YADRLDQYRI 128 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 344444445555566666777777888999999988755 888888888877777766433 3333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHH
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLT 299 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le 299 (357)
.+.+|++ ++..+..... .-.+-..+..+|.... |...|+..|+.++..+|
T Consensus 129 ~LK~IR~----~E~sl~p~R~---~r~~l~d~I~kLk~k~-----------------------P~s~kl~~LeqELvraE 178 (271)
T PF13805_consen 129 HLKSIRN----REESLQPSRD---RRRKLQDEIAKLKYKD-----------------------PQSPKLVVLEQELVRAE 178 (271)
T ss_dssp HHHHHHH----HHHHHHHHHH---HHHHHHHHHHHHHHH------------------------TTTTTHHHHHHHHHHHH
T ss_pred HHHHHHH----HHHHHhHHHH---HhHHHHHHHHHHHhcC-----------------------CCChHHHHHHHHHHHHH
Confidence 3333322 2221111111 1111222233343321 11257888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy18202 300 SQLEICDEKLQTANNHLRSDL 320 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El 320 (357)
.+.-.++..+..++....+|-
T Consensus 179 ae~lvaEAqL~n~kR~~lKEa 199 (271)
T PF13805_consen 179 AENLVAEAQLSNIKRQKLKEA 199 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHhhHHHHHHH
Confidence 888877777777776655443
|
|
| >cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1 | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.079 Score=45.81 Aligned_cols=199 Identities=12% Similarity=0.152 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+..|......-.++...+..+...+..++..+| ..-.+|+.+|-++++....+...++. ....+..
T Consensus 15 ~eqfnP~lrnLv~lGk~Y~KA~~a~~~A~~~y~dal~Kige~A~~s~~SkeLG~~L~qi~ev~r~i~~~le~-~lK~Fh~ 93 (226)
T cd07645 15 MEQFNPGLRNLINLGKNYEKAVNAMVLAGKAYYDGVAKIGEIAAVSPVSKELGHVLMEISDVHKKLNDSLEE-NFKKFHR 93 (226)
T ss_pred HHhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3444444444444444444444444444334444444333 22344888888888888777765444 3333333
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccH--
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE-- 285 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-- 285 (357)
.+..+|..-.. ++.-+..++ ...+.++......|+|..+++.|+...++|. +.+..
T Consensus 94 Ell~~LE~k~elD~kyi~a~~---Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~------------------kn~~kye 152 (226)
T cd07645 94 EIIAELERKTDLDVKYMTATL---KRYQTEHKNKLDSLEKSQADLKKIRRKSQGR------------------RNASKYE 152 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccCC------------------CCchhhH
Confidence 44444443333 333333333 3467788888999999999999998874331 11111
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
+|..+-...|...+.+++..-.+ ...+.+.+|-.||- -+|+=.+..-+..|-..-.+..+..+..|..-|
T Consensus 153 ~Ke~~~~e~~~~~q~el~~f~~~--~~k~AL~EErRRycFlvdkhC~~~~~~~~yh~k~~~lL~~klp~Wqe~c 224 (226)
T cd07645 153 HKENEYLETVTSRQSDIQKFIAD--GCREALLEEKRRFCFLVDKHCSFSNHIHYFHQQAAELLNSKLPVWQETC 224 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHhh
Confidence 33333333333333333322222 23455668888864 455555555555666666666777888897655
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of |
| >cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2 | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.083 Score=45.49 Aligned_cols=173 Identities=14% Similarity=0.227 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcch
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSH 212 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (357)
...+.|.....||.....+|+.+...++..+-... ..+..+..+|.+++..++.+...... +.+.....+..
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~-L~dqaq~sl~~ 94 (215)
T cd07632 16 DYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSE-LAKQLADTMVL 94 (215)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 33444555566777777777777777777665432 22333889999999999999887665 76666667777
Q ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHH
Q psy18202 213 PMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291 (357)
Q Consensus 213 ~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l 291 (357)
||.-+.. ++..+|+.-+.=++.-.+++. + +.|....+ +.|
T Consensus 95 pL~~F~KeDl~~vKe~KK~FdK~Se~~d~-------A---L~Knaqls-------------------------kkK---- 135 (215)
T cd07632 95 PIIQFREKDLTEVSTLKDLFGIASNEHDL-------S---MAKYSRLP-------------------------KKR---- 135 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------H---HHHHhhCC-------------------------cCC----
Confidence 7776543 455555544433332222222 1 22222110 000
Q ss_pred HhhHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 292 STAIPKLT--SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 292 ~~~i~~le--~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
+.++.+.+ .++......+..++=.----|.-.+..|.-+|-+.|..|...++.|+++..++
T Consensus 136 ~~E~~eae~~~~l~~sRr~F~~~ALdYV~qiN~lQ~RKKfeiLE~mLsym~Aq~TFFhQGyeL 198 (215)
T cd07632 136 ENEKVKAEVAKEVAYSRRKQHLSSLQYYCALNALQYRKRVAMLEPMLGYTHGQINFFKKGAEL 198 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111 12444444444444333456677778888999999999999999999887665
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac |
| >cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.13 Score=46.41 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH-HHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGY----EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA-VKQVLAR 230 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~----E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a-~k~~l~~ 230 (357)
..+++..+..++..+...... +..+..++..+-...+.++..+.. +++.+...+.++|..+...... .|.+...
T Consensus 35 E~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~-~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~ 113 (251)
T cd07653 35 EQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHEL-IAENLNSNVCKELKTLISELRQERKKHLSE 113 (251)
T ss_pred HHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554332211 122556666666666666665554 5555545556666555443322 2234444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHH
Q psy18202 231 RDVIQAEHDMCGEELQKKTAEKEQLT-----------NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLT 299 (357)
Q Consensus 231 R~~~~~~~~~~~~~l~kk~~~~~kL~-----------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le 299 (357)
-.+++.++......+.+.+....++- ....+ + ...+..+++++.++...+
T Consensus 114 ~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~--~-----------------~~s~~~~eK~~~k~~k~~ 174 (251)
T cd07653 114 GSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADAD--M-----------------NLTKADVEKAKANANLKT 174 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--h-----------------ccchhhHHHHHHHHHHHH
Confidence 44444445554444444444322111 11000 0 001234555555555554
Q ss_pred HHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 300 SQLEICDEKLQTANN---------------HLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~---------------~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.....++.+|...-. .+...++.+...|...|+++|..|+.........+..
T Consensus 175 ~~~~~a~~~Y~~~l~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~~~k~~l~~~~~~~~~~~~~~~~ 241 (251)
T cd07653 175 QAAEEAKNEYAAQLQKFNKEQRQHYSTDLPQIFDKLQELDEKRINRTVELLLQAAEIERKVIPIIAK 241 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 444444444322221 2335677888899999999999999988877666544
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l |
| >KOG2101|consensus | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00048 Score=65.77 Aligned_cols=75 Identities=27% Similarity=0.439 Sum_probs=59.3
Q ss_pred CcceeecchhhHHHHHHHHHHhC-CCCCCCCCCCcc---ccchhhhcCCHHHHHHHHHHHHHHH--HHHHcCccccCChh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETL-PSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLDQFL--RRVTSHPVLSVNSH 79 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~-p~~~iPplP~K~---~~~~~~~~~~~~fie~R~~~L~~fL--~~i~~hp~L~~~~~ 79 (357)
..|.|+|||+||..||..|.+.| |...+| .|... ......++++..++..|+..++.|| +....+|.+.++..
T Consensus 152 ~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~fl~~~f~~~~~~~~~~~~ 230 (362)
T KOG2101|consen 152 STAVVSRRYSDFSRLHRRLKRQFNPALRFP-GPKFRNEIQKKKLLGNFDADVIPERSEALEEFLSLQFKDSKPSNVNCKK 230 (362)
T ss_pred cCceeeechhHHHHHHHHHHHhcCccccCC-CccchhHHHHHHhhccchhhhhhhhhhhHHHHHHhhhhhccccccchHH
Confidence 46999999999999999999999 776664 33333 1111237789999999999999999 88888888888776
Q ss_pred hh
Q psy18202 80 AI 81 (357)
Q Consensus 80 ~~ 81 (357)
+.
T Consensus 231 ~~ 232 (362)
T KOG2101|consen 231 VM 232 (362)
T ss_pred hh
Confidence 65
|
|
| >cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53 | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.11 Score=45.30 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+.++........++...+..+...|..+|..+|.. -.+|+.+|-++++....+..-++. +...+..
T Consensus 17 meqfnP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~m~~~hr~i~~~le~-~lk~Fh~ 95 (232)
T cd07646 17 MEQFNPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEE-MLKSFHN 95 (232)
T ss_pred HHccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 333444445554444444444444444445555555554421 234888888888888777654444 3333444
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
.+..+|..-+. +..-+.. -..+.+.++....+.|+|.+.++.||...+.|... ...-.+|
T Consensus 96 eli~pLE~k~E~D~k~i~a---~~Kky~~e~k~k~~sleK~qseLKKlRrKsqg~k~----------------~~ky~~k 156 (232)
T cd07646 96 ELLTQLEQKVELDSRYLTA---ALKKYQTEHRSKGESLEKCQAELKKLRKKSQGSKN----------------PQKYSDK 156 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----------------chhhHHH
Confidence 44555543333 2222222 33456677888888888888888888866332100 0000133
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWR--LEKKNDLKKILLKIADQQIAYYQQRSDRGNCNC 357 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~--~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~~~ 357 (357)
.-+.-..+...+.+++....+ .....+.+|-.||- -+|.=.+..-+..|-..-.+..+..+..|..-|
T Consensus 157 e~q~~~~~~~~q~ele~f~~~--~~k~Al~EErRRycflvdk~C~~~~~~~~yh~k~~~lL~~kl~~Wqe~c 226 (232)
T cd07646 157 ELQYIEAISNKQGELENYVSD--GYKTALTEERRRYCFLVEKQCAVAKNSIAYHSKGKELLTQKLPSWQQAC 226 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHh
Confidence 322322222222233322222 23345668888764 344444555555555555566677788897665
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP |
| >cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.1 Score=44.83 Aligned_cols=184 Identities=11% Similarity=0.122 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----Cc----hhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 131 FSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YE----PQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 131 ~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E----~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
...-++.++..|+++.+....++.+.+.++.+...|+..+..+.- .+ ..++.+|..+++.+..+-+....
T Consensus 7 hE~ele~~~~~IkkliK~~~~li~a~K~~s~A~r~Fa~~L~df~f~~igd~~tdde~~I~~sL~~F~~~L~~ie~~r~~- 85 (207)
T cd07633 7 YEQELERTNKFIKDVIKDGNALISAIKEYSSAVQKFSQTLQSFQFDFIGDTLTDDEINIAESFKEFAELLQEVEEERMM- 85 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 344567777777777777778888888888888888888877742 12 22789999999998888776554
Q ss_pred hhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+.+.....+..+|..+.. .+..+|+.-+.=++.--.|. +.+++-...++.+.
T Consensus 86 l~d~aq~s~~~~L~~F~Kedi~~~Ke~KK~FdK~se~~~----------~aL~k~a~~s~k~K----------------- 138 (207)
T cd07633 86 MVQNASDLLIKPLENFRKEQIGFTKERKKKFEKDSEKFY----------SLLDRHVNLSSKKK----------------- 138 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH----------HHHHHHhcccccCC-----------------
Confidence 655555566666665532 23333333322222111111 11222221111100
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
..+++++...+...+.-|..++=.-.-.|.-.+..|.-++-+.|..|...+.-||.+..++-
T Consensus 139 -----------~~e~eEA~~~L~~~r~~F~~~aLdYV~qI~~vQerKKfeive~mLsf~~a~~tf~hqG~el~ 200 (207)
T cd07633 139 -----------ESQLQEADLQVDKERQNFYESSLEYVYQIQEVQESKKFDVVEPVLAFLHSLFTSNNLTVELT 200 (207)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 12445555556666665555554444567778888899999999999999999998877653
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7 | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.14 Score=45.60 Aligned_cols=151 Identities=15% Similarity=0.171 Sum_probs=85.9
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 175 GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY-IDAVKQVLARRDVIQAEHDMCGEELQKKTAEK 252 (357)
Q Consensus 175 ~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~ 252 (357)
..|.+ |..++..+-...+.++..+.. ++..+...+..+|..|... ....+.+=..=..++..+......+.+.+...
T Consensus 52 ~~e~Gtl~~sw~~~~~e~E~~a~~H~~-la~~L~~ev~~~l~~f~~~~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y 130 (233)
T cd07649 52 AQEEGTLGEAWAQVKKSLADEAEVHLK-FSSKLQSEVEKPLLNFRENFKKDMKKLDHHIADLRKQLASRYAAVEKARKAL 130 (233)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 788888888888888888776 6666666666777766553 22222222222222223322222222222211
Q ss_pred -------HH----hhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHH-------H
Q psy18202 253 -------EQ----LTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTAN-------N 314 (357)
Q Consensus 253 -------~k----L~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~-------~ 314 (357)
+. +... + ....++.+.+++.+....++++..+.+.++.+. .
T Consensus 131 ~~~cke~e~~~~~~~~~---k------------------~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m~ 189 (233)
T cd07649 131 LERQKDLEGKTQQLEIK---L------------------SNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMV 189 (233)
T ss_pred HHHHHHHHHHHHHHHhh---c------------------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0011 0 011245566666666666666665555554433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 315 HLRSDLERWRLEKKNDLKKILLKIADQQIAYYQ 347 (357)
Q Consensus 315 ~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~ 347 (357)
.+-..++.+...|..-|+++|.+|+..-.+.+-
T Consensus 190 ~~~~~~Q~~Ee~Rl~~lk~~L~~y~~~~~~~~~ 222 (233)
T cd07649 190 TTSLELERLEVERIEMIRQHLCQYTQLRHETDM 222 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 345788899999999999999999988776543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.17 Score=43.46 Aligned_cols=196 Identities=11% Similarity=0.084 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEP--QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~--~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+-++........+.+.+.++..+..+|......||.+|..+|.-|+ .++..+..+|+....+...-.. +...+ ..|
T Consensus 9 e~L~~t~~~Y~~l~~~~~~l~~~f~~l~qtqk~~Gd~Fa~l~~re~~p~l~eeF~~~ae~hR~l~k~G~~-ll~ai-~~~ 86 (215)
T cd07659 9 EELEQTAELYKGLVEHTKRLLRAFYALSQTHKEFGDLFANIGVREPQPAASEAFTKFGEAHRSIEKFGIE-LLKTL-KPM 86 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHhHHHHHHHHHhHHH-HHHHh-HHH
Confidence 3344555566778888888999999999999999999999999876 4999998888876666543222 22222 123
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHH
Q psy18202 211 SHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEK 290 (357)
Q Consensus 211 ~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~ 290 (357)
...|.-|+. .++-+++- -+..|+.+.-+...-+.+++.+.... .+. + . -+...-+|+.
T Consensus 87 ~s~l~T~l~--KaipDT~l----TikkY~~ar~EY~ayc~kvkEmd~ee--~~~-----------~-~--~~e~l~rvet 144 (215)
T cd07659 87 LSDLGTYLN--KAIPDTKL----TIKKYADVKFEYLSYCLKVKEMDDEE--YSY-----------A-A--LDEPLYRVET 144 (215)
T ss_pred HHHHHHHHH--hhCchHHH----HHHHHHHHHHHHHHHHHHHHHhcccc--ccc-----------c-c--ccCcHHHHHh
Confidence 333333322 22333322 22234555545555555555554321 000 0 0 0011256665
Q ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 291 LSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 291 l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
-+-+..-.=+..+.+.++++.+...+..=++--+..+.++|..-|.-|...-..|+..+.+.
T Consensus 145 gnyeyrl~lRcrq~~r~kf~kLR~DV~vKlelLe~k~vk~i~~QL~~f~~aisay~~~~~~~ 206 (215)
T cd07659 145 GNYEYRLILRCRQEARARFAKLRQDVLEKLELLDQKHVQDIVFQLQRFVSALSEYHSDCHEL 206 (215)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555556688889999999999999999999999999999999999999998887665
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th |
| >cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.24 Score=44.87 Aligned_cols=57 Identities=18% Similarity=0.289 Sum_probs=37.8
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNH--------------LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~--------------~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
++.+++++.++...+..+..+..+|...-.. +...++.++..|..-|+.+|..|+.+
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~l~~y~~~ 237 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEILLSYHRH 237 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778888877777777777776555333 23455666666666666666666654
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce |
| >cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.2 Score=43.44 Aligned_cols=172 Identities=16% Similarity=0.284 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhh-------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH
Q psy18202 142 ISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWA-------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPM 214 (357)
Q Consensus 142 l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~-------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (357)
.+.+.....||.....+|+.+-..|+..+...- ..+.-+..+|.+++..+..+...... +.+.....+..+|
T Consensus 18 ~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~-L~~q~~~sl~~pL 96 (215)
T cd07631 18 FNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-LSTQLADAMMFPI 96 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344555566777777777777777777776643 11122889999999999999887665 6666666677777
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHh
Q psy18202 215 KDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLST 293 (357)
Q Consensus 215 ~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~ 293 (357)
.-+.. .+..+|++=+. ++.+.+.+......--.|... + ..+.+.
T Consensus 97 ~~F~kedL~~~Ke~KK~-------FdK~Se~~d~Al~K~a~lsk~---K---------------------~~E~~~---- 141 (215)
T cd07631 97 TQFKERDLKEILTLKEV-------FQIASNDHDAAINRYSRLSKR---R---------------------ENEKVK---- 141 (215)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHhcCCCC---C---------------------CchHHH----
Confidence 65532 33444443332 233333333333222222211 1 011111
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 294 AIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 294 ~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
++....+......+..+.-...--|...+..|.-+|.+.|..|.+.++.|+++..+
T Consensus 142 --eea~~~v~~tR~~F~~~aLdYv~qLn~lQ~rKKfefLe~lLs~m~A~~tFFhqG~e 197 (215)
T cd07631 142 --YEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSE 197 (215)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 12333344455555555555556778888889999999999999999999998777
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo |
| >cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.2 Score=42.80 Aligned_cols=180 Identities=13% Similarity=0.172 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhH
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPM 214 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 214 (357)
..|.++.+.++.|..+-......-..+..++..||. .+++++.++-+++.....++.++.. +..++..-+.-|+
T Consensus 16 ~~L~k~kk~vkai~~sg~~hv~ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~-L~qn~nniv~fpl 94 (213)
T cd07640 16 ASLQRIKKIVKAIHNSGLNHVENEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKN-LVQNLNNIVSFPL 94 (213)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhccch
Confidence 445666666666665555555555556666666553 3456999999999999999888877 6666665566666
Q ss_pred HHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHH
Q psy18202 215 KDYL-MYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292 (357)
Q Consensus 215 ~~~~-~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~ 292 (357)
..++ +.+..+| ++-+.=++++-+|+.+.....+.+..+.+ -.|.. .
T Consensus 95 dsflK~dlr~~K~D~KK~FeK~skDyE~kl~K~ak~~r~k~~-------------------~~g~~-------------~ 142 (213)
T cd07640 95 DSLLKGQLRDGRLESKKQMEKAWKDYEAKIGKLEKERREKQK-------------------QHGLI-------------R 142 (213)
T ss_pred HHHHHHHhhhhhHHHHhHHHHHHHHHHHHHHHHhccccccch-------------------hcccc-------------c
Confidence 6543 4555555 55555555555555533222221111100 01111 0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 293 TAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.++++..+..+....-|....=.-.--+.--+..+..|+-..|.+|-..|..|+++..+.
T Consensus 143 ~e~eEaae~l~~eRr~Fql~acdYllkin~iq~KK~~diLq~Llsy~hAQ~~fFqqG~~~ 202 (213)
T cd07640 143 LDMTDTAEDMQRERRNFQLHMCEYLLKAQESQMKQGPDFLQSLIKFFHAQHNFFQDGWKA 202 (213)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333333333333332221111122333345677899999999999999999987665
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran |
| >KOG1118|consensus | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.14 Score=46.36 Aligned_cols=95 Identities=8% Similarity=0.158 Sum_probs=53.6
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HhhH-----HHHHHHHHHHHHHHHhhCC---
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLY-----------------KERK-----DYVSEAHQFAIVLNTWAGY--- 176 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~-----------------k~~~-----~l~~~~~~~~~~~~~l~~~--- 176 (357)
...|..|.+++..++--...+.++...+..-. |.+- .+...-..+|.++...|..
T Consensus 22 TkLdDdF~eme~~vdvt~~~v~~i~~~tteylqpnpa~rakl~~~n~lsKvrG~~k~~~ypq~e~~Lg~~mik~gkeLg~ 101 (366)
T KOG1118|consen 22 TKLDDDFLEMEKEVDVTSKGVTKILAKTTEYLQPNPASRAKLAMLNTLSKVRGQVKEKGYPQTEGLLGDVMIKHGKELGD 101 (366)
T ss_pred CcCChHHHHHHHhHHHHHHHHHHHHHhhHHhcCCChhhhhHHHHHHHHHHhcccccCCCCccchhHHHHHHHHHHHhcCC
Confidence 34556677776666666665555543332222 1110 1112222355555555432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHH
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDY 217 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 217 (357)
+.+.+..+..+|+.+..++..... +.......|.++|..+
T Consensus 102 dSs~g~tl~~~Gesm~~i~evk~s-l~~~vkq~FldpL~~l 141 (366)
T KOG1118|consen 102 DSSFGHTLIDAGESMREIGEVKDS-LDDNVKQNFLDPLQNL 141 (366)
T ss_pred CccccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHh
Confidence 222677788888888888877554 6656666888888766
|
|
| >cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.36 Score=43.25 Aligned_cols=64 Identities=20% Similarity=0.254 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI 221 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 221 (357)
.+++..+..++..+...+..+++ +..++..+....+.++..+.. +++.+...+..+|..|....
T Consensus 36 ~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~-la~~L~~ev~~~l~~~~~~~ 100 (239)
T cd07658 36 LNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRN-LGSALTEEAIKPLRQVLDEQ 100 (239)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666554333333334 888999999999999888877 77777667778888776654
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo |
| >cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0048 Score=47.12 Aligned_cols=57 Identities=32% Similarity=0.544 Sum_probs=42.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-----CCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-----LPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-----~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++..|.|.|+|.||..|.+.|... |.+ +|+||++... +-.++.+ ..+|..||.|+..
T Consensus 37 qgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~--L~eLp~~~~l-----~~~~~~v---~~~l~~YL~RlS~ 98 (115)
T cd07298 37 QGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQ--LPELPRSDSL-----KDSPESV---TQMLMAYLSRLSA 98 (115)
T ss_pred CCCceEEEeeHHHHHHHHHHHHHHHHhhhhhc--cccCCCcccc-----cccHHHH---HHHHHHHHHHHHH
Confidence 467899999999999998888764 555 8899987653 1134555 4578888888764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and |
| >PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.27 Score=44.95 Aligned_cols=134 Identities=13% Similarity=0.179 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy18202 178 PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTN 257 (357)
Q Consensus 178 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~ 257 (357)
..|+.+|..++.+..++++.--. +-..+...|..+|...+. ..+..+-+.|.++ +.+.-.++-.|..+...
T Consensus 148 ~~L~~aL~~~S~~~~~I~~aRL~-qD~~I~~~Fn~~l~~~Ln--~~~~~a~k~RkkV----~~sRL~~D~~R~~~k~~-- 218 (289)
T PF10455_consen 148 DPLSKALLKYSSAYEKIAQARLE-QDQLIQKEFNKKLQTTLN--TDFKKANKARKKV----ENSRLQFDAARANLKNK-- 218 (289)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHhccc--
Confidence 34999999999999999876322 222233456655554432 2333333333322 12222222222222110
Q ss_pred cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 258 KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLK 337 (357)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~ 337 (357)
. ++++-+ ++..+++.++++|...++....+|+.+- ...+.-+.|..
T Consensus 219 ~-------------------------~pekee-------~~r~~lE~aEDeFv~aTeeAv~~Mk~vl--~~~e~l~~Lk~ 264 (289)
T PF10455_consen 219 A-------------------------KPEKEE-------QLRVELEQAEDEFVSATEEAVEVMKEVL--DNSEPLRLLKE 264 (289)
T ss_pred C-------------------------CcccCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHH
Confidence 0 011111 3445577788899999999999999885 34778899999
Q ss_pred HHHHHHHHHHHHHhccc
Q psy18202 338 IADQQIAYYQQRSDRGN 354 (357)
Q Consensus 338 ~a~~qi~~~~~~~~~W~ 354 (357)
|+..|..||+++++.-+
T Consensus 265 lv~AQl~Yhk~aae~L~ 281 (289)
T PF10455_consen 265 LVKAQLEYHKKAAEALS 281 (289)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987643
|
Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO []. |
| >KOG4773|consensus | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0047 Score=56.56 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=66.7
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCC---------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPS---------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV 73 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~---------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~ 73 (357)
+..++..|.|||-+|..++..|.+++++ |++|+||.+-.+ .|.++--+.|...|..|+.-+++-|+
T Consensus 48 ~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~f-----dfkqe~Ae~r~~~ln~y~e~LlslPi 122 (386)
T KOG4773|consen 48 YGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYF-----DFKQEIAEERIPALNAYCEWLLSLPI 122 (386)
T ss_pred hccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEe-----chhhhhhhhhhHHHHHHHHHHHhcch
Confidence 4567889999999999999999999983 789999999876 25678888999999999999999998
Q ss_pred ccC-Chhhhccccc
Q psy18202 74 LSV-NSHAIIFLTA 86 (357)
Q Consensus 74 L~~-~~~~~~FL~~ 86 (357)
-+- ++.|..|.-.
T Consensus 123 ~~l~~p~l~~fffv 136 (386)
T KOG4773|consen 123 GRLGGPGLRPFFFV 136 (386)
T ss_pred hhcCCCCceeeeee
Confidence 764 6777776543
|
|
| >cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.72 Score=41.16 Aligned_cols=71 Identities=7% Similarity=0.142 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAE 251 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~ 251 (357)
+..++..+-...+.++..+.. ++..+...+.++|..+......-+ .+...=.+++..+......+++.+..
T Consensus 58 l~~a~~~i~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~ 129 (236)
T cd07651 58 LKNSLDTLRLETESMAKSHLK-FAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREK 129 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776665 555555566666665544333222 22222233444455555555555554
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation |
| >cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.94 Score=41.08 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=37.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
.|+++++.+....-........+|..=-..+...++.++..|..-|+..|..|+...-..
T Consensus 157 ~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y~~~~~~~ 216 (261)
T cd07648 157 AKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASYAEVLSEN 216 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444433333334444444333334557889999999999999999999886543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >KOG3876|consensus | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.94 Score=40.24 Aligned_cols=129 Identities=11% Similarity=0.083 Sum_probs=79.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
-+..|++|+.--+.++........+.+.+..+..+...|......+|.+|..|+.-+++|..-+.--++...-++..
T Consensus 120 ~rTVD~ElEaQie~Lrd~~rkY~~vl~lar~fS~~l~qmv~tq~~L~dsFadLs~K~~elq~eft~nseTqr~l~kn--- 196 (341)
T KOG3876|consen 120 SRTVDLELEAQIEVLRDTKRKYESVLALARAFSHHLTQMVETQHALGDSFADLSQKSPELQEEFTYNSETQRLLGKN--- 196 (341)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHhCcCHHHHHHHhhh---
Confidence 46788888877666777777777777777788888888888888999999999887776665543333332222211
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAV-KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
- ..+...|.+++.-+..+ ..++..--.-..+|+.|.-+.+.-|..++.+..+
T Consensus 197 -----g-etLl~alnfFIsSvnTl~nkTi~DTL~Ti~qyEsARiEyDayR~Dle~~~l~ 249 (341)
T KOG3876|consen 197 -----G-ETLLGALNFFISSVNTLVNKTIEDTLMTIKQYESARIEYDAYRTDLEELTLG 249 (341)
T ss_pred -----H-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhhhhhhhhhHHHhcCC
Confidence 0 13344444443333221 1233333334456777777777777777766543
|
|
| >KOG0521|consensus | Back alignment and domain information |
|---|
Probab=95.64 E-value=1.2 Score=46.60 Aligned_cols=182 Identities=20% Similarity=0.291 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC---CchhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy18202 129 EQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG---YEPQLSSVIRQVSKAVDTTASLHKNLLIEP 205 (357)
Q Consensus 129 ~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~---~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 205 (357)
..+...+..++..+.++.+...++......+..+..+||..+..+.. .+..++..+.+|+.++..+...... +...
T Consensus 24 ~~~ee~~~~~~~~l~k~~~~~~~~~~~~~~~~~~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~-L~~q 102 (785)
T KOG0521|consen 24 DVFEEDAGTLEKYLNKLLKAMTRKYDAGKEFVQATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTE-LRSQ 102 (785)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHH-HHHH
Confidence 35667788888888888888888888889999999999988887732 2333788999999999988877665 5555
Q ss_pred hhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCcc
Q psy18202 206 FHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTS 284 (357)
Q Consensus 206 ~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 284 (357)
....+..++.-+. ..+.-+++. |. .++.+.++++-+.....++....
T Consensus 103 ~~~~~~~~l~~f~k~dl~~v~~~---kk----~f~ka~~~~d~a~~k~~~l~k~~------------------------- 150 (785)
T KOG0521|consen 103 LAHTLSLPLSQFVKGDLHEVKEL---KK----LFEKASEEYDLALVKYSRLPKKR------------------------- 150 (785)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhh---hH----HHHHHHhhHHHHHHHhhhhhhcc-------------------------
Confidence 5555666655432 333444444 22 23334444444444444433220
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
. .....++++.+......+....-...--+---+..|..++-+.+..|...|+.|+++.
T Consensus 151 -----~-~~~~~e~~~~l~~~r~~f~~~~~~y~~~ln~~q~kk~~~~le~~l~~~~aq~~fF~~g 209 (785)
T KOG0521|consen 151 -----R-SKVKTEVEEELAAARRKFQLTALDYVLALNVLQAKKQFEILETLLGFMHAQINFFKQG 209 (785)
T ss_pred -----c-cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchHHHHHHHHHHHhccchhccc
Confidence 0 0111223334444444444333332222333334456777777788888888777665
|
|
| >cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein | Back alignment and domain information |
|---|
Probab=95.39 E-value=2 Score=38.93 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=37.5
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN-------NHLRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~-------~~~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
..++++..++...++.+..+..+++... ..+...++.++..|..-|+++|..|+...
T Consensus 150 k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~~~~~ 213 (261)
T cd07674 150 KELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGYSHSV 213 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555554544444444433 33457889999999999999999998663
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >KOG3651|consensus | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.9 Score=39.28 Aligned_cols=193 Identities=10% Similarity=0.062 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh--HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ--LSSVIRQVSKAVDTTASLHKNLLIEPFHEHN 210 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (357)
+-++.-..-.+.+.....++-+...+++..+..||..|..++.-|++ -+++|..||+....+..--.. .+ ..+
T Consensus 139 eeLE~tae~Ykglveh~~~ml~a~y~lsqt~k~FGd~F~~i~vhEpQq~AsEAF~~Fgd~HR~ieK~g~~-~~----k~i 213 (429)
T KOG3651|consen 139 EELEETAEFYKGLVEHFGDMLQAQYKLSQTQKEFGDIFCDIAVHEPQQTASEAFSSFGDKHRMIEKKGSE-SA----KPI 213 (429)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHhccc-hh----hhh
Confidence 33444555667888888999999999999999999999999988876 788999999876665432111 11 112
Q ss_pred chhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHH
Q psy18202 211 SHPMKDYLMYIDAV----KQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSED 286 (357)
Q Consensus 211 ~~~l~~~~~~~~a~----k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 286 (357)
-..+.+..-|+.-+ +-++++--.+..+|-... |. .++ .+ |... ++.-..-|- =
T Consensus 214 kpmlsDL~tYlnkaiPDTrLTikkYlDvKfeYLSYC--LK-vKE-MD-------DEE~-----------~f~AlqEPL-Y 270 (429)
T KOG3651|consen 214 KPMLSDLQTYLNKAIPDTRLTIKKYLDVKFEYLSYC--LK-VKE-MD-------DEEV-----------EFVALQEPL-Y 270 (429)
T ss_pred hHHHHHHHHHHhccCCcchhhhHHhhhhhHHHHHHH--Hh-hhh-cc-------chhh-----------ceeeecCce-e
Confidence 22222222222211 111111111111111100 00 000 00 0000 000000000 0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
||+.=.=+..-.-+..+.+..+|..+...++.-++.....-..|+..-|..++.....+++.++++.
T Consensus 271 RVeTGNYEYRliLRCRQeaRarF~kmR~DVleKmELLdqKHv~Di~~qL~~l~~tmak~~~~c~~~L 337 (429)
T KOG3651|consen 271 RVETGNYEYRLILRCRQEARARFMKMRDDVLEKMELLDQKHVRDIAQQLAILAKTMAKCQQECAEIL 337 (429)
T ss_pred EeecCCeeeehhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111112234556778888888888888888888889999999999999999999988764
|
|
| >cd07661 BAR_ICA69 The Bin/Amphiphysin/Rvs (BAR) domain of Islet Cell Autoantigen 69-kDa | Back alignment and domain information |
|---|
Probab=95.31 E-value=1.6 Score=37.31 Aligned_cols=186 Identities=10% Similarity=0.138 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy18202 133 QYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLS-SVIRQVSKAVDTTASLHKNLLIEPFHEHNS 211 (357)
Q Consensus 133 ~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~ 211 (357)
+.+.........+.++++.....-..|+..-..+|..|..+|.-++.+. ..+...++++-..++..- ..-
T Consensus 9 elfrsvq~t~~~Llk~i~~yq~~l~~lsq~e~~LG~fl~e~~~~d~t~ag~~m~~t~KaL~~sg~qrl---------~~r 79 (204)
T cd07661 9 ELFRSVQDTCLELLKIIDNYQERLCILSQEENVLGKFLKEQGKIDKTTAGKMMAATGKALSFSSQQRL---------ALR 79 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhhccHHHHHHHHHHHhHHHHH---------HHH
Confidence 3444445555566666777777777788888889999988887776544 334444444444333211 122
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 212 HPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN-KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 212 ~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
.||..+...+..+. .++..-..-...|+.+-.+....+........ .+++- ....+|
T Consensus 80 ~pl~~f~~~v~Tf~~rai~Dtl~Ti~~~E~aR~EY~a~~~~mk~~s~eldP~~-------------------~~~l~k-- 138 (204)
T cd07661 80 VPLLRLYQEVETFRERAIADTLQTIQRMEKCRTEYRAALLWMKSVSQELDPDT-------------------YKQLEK-- 138 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhhcCCcc-------------------chhHHH--
Confidence 23333333332222 01111111111222322222222222222111 00000 000144
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
+..++.++...+++|+.....+..=++--...|..-|...|..|-..-+.|+++.....
T Consensus 139 -----fr~aQ~qvr~~K~kfdkLk~Dv~qKvdlL~asR~n~ls~~L~~yqnal~~y~~kt~~~~ 197 (204)
T cd07661 139 -----FRKAQAQVRSAKERFDKLKMDVCQKVDLLGASRCNLLSHALVTYQNTLLQFWEKTSRTM 197 (204)
T ss_pred -----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556668888899999999999999999999999999999999999999998876544
|
The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Islet cell autoantigen 69-kDa (ICA69) is a diabetes-associated autoantigen that is highly expressed in brain and beta cells. It is involved in membrane trafficking at the Golgi complex in neurosecretory cells. It is coexpressed with Protein Interacting with C Kinase 1 (PICK1), also a the BAR domain containing protein, in many tissues at different developmental stages. In neurons, ICA69 colocalizes with PICK1 in cell bodies and dendrites but is absent in synapses where PICK1 is enriched. ICA69 contains an N-terminal BAR domain and a conserved C-terminal domain of unknown function. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. ICA69 associate |
| >PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking | Back alignment and domain information |
|---|
Probab=95.29 E-value=2 Score=38.13 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--hhCCchhHHHHHHHHHHHHHHHH
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT--WAGYEPQLSSVIRQVSKAVDTTA 195 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~--l~~~E~~l~~~l~~~~~~~~~~~ 195 (357)
.++..+...+..+...+..+.+....+.....+++..+..+|..=.. ++..-..++.++..++...+..+
T Consensus 31 ~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a 102 (236)
T PF09325_consen 31 DYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQA 102 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777777777777777777777777765543322 22222234444444444444433
|
This is the C-terminal dimerisation domain []. |
| >cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins | Back alignment and domain information |
|---|
Probab=95.14 E-value=2 Score=37.36 Aligned_cols=71 Identities=10% Similarity=0.073 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----hhCCchhHHHHHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT----WAGYEPQLSSVIRQVSKAVDTTASL 197 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~----l~~~E~~l~~~l~~~~~~~~~~~~~ 197 (357)
.+..+...+..+...+..+.+....+.....+++..+..+|..... |+..-..++..+..++......+..
T Consensus 12 ~v~~le~~l~~l~~~~~~~~k~~~~l~~~~~elg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (218)
T cd07596 12 YILKLEEQLKKLSKQAQRLVKRRRELGSALGEFGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQ 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777777777776543 4444444666666666666655543
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.061 Score=40.84 Aligned_cols=59 Identities=24% Similarity=0.320 Sum_probs=39.0
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-CC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-LP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++.+|.|.|.|.||..|.+.|... |- ..-+++||+-... +. .+ +.-..+|..||.|+..
T Consensus 35 qgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~l----~~-~~---~~~~~~l~~YL~RlS~ 96 (113)
T cd07299 35 QGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPPLCEI----GD-RL---QILTPLLSEYLNRLTG 96 (113)
T ss_pred cCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCccccc----cc-hH---HHHHHHHHHHHHHHHH
Confidence 457899999999999988888752 21 2345666665432 11 12 2335688899998864
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs |
| >KOG0905|consensus | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.032 Score=58.86 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=62.1
Q ss_pred eeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCC-HHHHHHHHHHHHHHHHHHHcC-ccccCChhhhccccc
Q psy18202 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYS-KEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIFLTA 86 (357)
Q Consensus 9 ~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~-~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~FL~~ 86 (357)
-+.|.|.+|..||..|...||..-+|.+|..-.. ++.. ...-++|.+.|++||..+.+- +.+..++.+..|.-+
T Consensus 1409 ~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~~~~~----grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhp 1484 (1639)
T KOG0905|consen 1409 FIFRSFEEFQELHNKLRARFPSMKLPSFPHRIHL----GRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHP 1484 (1639)
T ss_pred HHHHhHHHHHHHHHHHHHhCccccCCCCCceeee----cccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeech
Confidence 3679999999999999999999999999977665 4433 456789999999999999854 778888888888764
|
|
| >cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17 | Back alignment and domain information |
|---|
Probab=94.94 E-value=2.7 Score=37.91 Aligned_cols=65 Identities=6% Similarity=-0.011 Sum_probs=43.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTA---------------NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i---------------~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
+..+++++.....-+...+.++.+|..- --.+...++.++..|...|+++|..|+...-......
T Consensus 162 k~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~~l~e~l~~~~~~e~~~~~~i 241 (253)
T cd07676 162 KADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIGRVGESMKTYAEVDRQVIPII 241 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3556666666666666666666553222 1223467788999999999999999998887765543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.7 Score=37.37 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 301 QLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
.++.+..+++.=-..+.+-++.-+.+|..-|+++|..|+...-.++.+.-+
T Consensus 147 ~l~~~~~~We~~~~~~~e~fQ~leeeRl~~lk~~l~~y~~~~sd~~~~~~~ 197 (228)
T cd07650 147 DLEEARQQWDSQAPFLFELLQAIDEERLNHLKDVLLQFQTHESDYALRTTE 197 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhhH
Confidence 344555556555555666777778889999999999999988887765433
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) | Back alignment and domain information |
|---|
Probab=94.85 E-value=2.9 Score=37.79 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=26.6
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW 323 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF 323 (357)
++.+++++.+++.....++.++.+|......+...-.+|
T Consensus 167 ~~q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y 205 (258)
T cd07680 167 PEQQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQY 205 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467777888888877777777777766665554444444
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog |
| >cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3) | Back alignment and domain information |
|---|
Probab=94.80 E-value=3 Score=37.69 Aligned_cols=56 Identities=21% Similarity=0.275 Sum_probs=34.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRS--------------DLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~--------------El~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.+++++.+++..+.+++.+..+|+.....+.. -.+.|..+|..-|+++|.+|-.
T Consensus 167 ~~q~~K~~~kleK~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~flK~~L~~~~~ 236 (258)
T cd07681 167 QEQLRKLQDRVEKCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCFFKEMLLDLHQ 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777777776665554433 3344445555555555555544
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to |
| >cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis | Back alignment and domain information |
|---|
Probab=94.73 E-value=2.7 Score=36.86 Aligned_cols=128 Identities=13% Similarity=0.186 Sum_probs=67.3
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
++...|-+.++...-.+|+..+..+.-.. ..+.+.+..+|..-....+.-.+|+.+|.+++.....+-.-...
T Consensus 17 ~k~s~P~~~d~v~ka~K~~saL~a~~~A~-------~~f~Da~qKvad~A~~s~GaSkElG~~Ltri~~~hr~iE~~lk~ 89 (231)
T cd07643 17 MKGSYPLWEDFVSKATKLHSQLRATIVAT-------SAFLDAFQKIADAATNTRGATKEIGSALTRMCMRHKSIETKLKQ 89 (231)
T ss_pred hccCCccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777777777777765543332 22333333333332222222334777887777777665444443
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
++..+...|..||..-+.+-.-.-..|+ ...-.+|..+..+|.|+...--+|+..
T Consensus 90 -f~~~L~~~lI~pLe~k~E~wkk~~~~ld--Kd~~k~~kk~R~elKk~~~dt~klqkk 144 (231)
T cd07643 90 -FTSALMDCLVNPLQEKIEEWKKVANQLD--KDHAKEYKKARQEIKKKSSDTIRLQKK 144 (231)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4555555556666544333222222222 223345677777777777765566543
|
The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate |
| >cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.1 Score=39.77 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=39.4
Q ss_pred CCCcceeecchhhHHHHHHHHHHh-CC--CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVET-LP--SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~-~p--~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
++..|.|.|.|.||..|-+.|... |- -.-+++||+-... .. .+ +.-..+|..||.|+..
T Consensus 36 qg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~~~~~----~~-~~---~~~~~~l~~YL~RlS~ 97 (114)
T cd07278 36 QGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPEECIE----KR-EQ---QNLHQVLSDYLKRLSS 97 (114)
T ss_pred CCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCccccc----cc-hH---HHHHHHHHHHHHHHHH
Confidence 457899999999999998888762 22 2346777775432 11 11 2335678888888764
|
The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d |
| >cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2 | Back alignment and domain information |
|---|
Probab=94.40 E-value=3.6 Score=36.85 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW--------------RLEKKNDLKKILLKIAD 340 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF--------------~~~k~~~l~~~l~~~a~ 340 (357)
+.+++++.+++.....++.+..+|......+..--++| ..+|..-|+.+|-.||.
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~~~c~~fq~lEeeRi~f~k~~lw~~~n 222 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHVKACEFFEKQECERINFFRNAVWTHVN 222 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777766666666655544443333333 44455555555555543
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca |
| >cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2) | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.7 Score=36.95 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDL--------------ERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El--------------~rF~~~k~~~l~~~l~~~a~ 340 (357)
++.+++++.+++..+.+++.+...++..-..+..-- +.|..+|..-|+.+|..+..
T Consensus 167 ~~q~~K~~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F~K~~l~~~~~ 236 (258)
T cd07679 167 PEQLKKLQDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQK 236 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777655544443322 33444455555555555443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su |
| >cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein | Back alignment and domain information |
|---|
Probab=94.20 E-value=4.3 Score=37.01 Aligned_cols=58 Identities=10% Similarity=0.122 Sum_probs=36.9
Q ss_pred HHHHHHHHhhHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICD-------EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~-------~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
+.++++++.++....+..+.+- .+|+.--..+...++.++..|..-|+++|..|+..-
T Consensus 156 ~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~~k~~l~~y~~~~ 220 (269)
T cd07673 156 QREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIRIKEIIGSYSNSV 220 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544444333 333333334557888899999999999999999843
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >KOG3725|consensus | Back alignment and domain information |
|---|
Probab=93.00 E-value=6.3 Score=35.07 Aligned_cols=137 Identities=18% Similarity=0.347 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhh
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQ---AEHDMCGEELQKKTAEKEQLT 256 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~---~~~~~~~~~l~kk~~~~~kL~ 256 (357)
.+.++-++++.-.+++..-.+ +.......|..||+.++. ..+|.+-+.|..++ .++..+...|.|+++.- +.
T Consensus 111 YG~aLiKvaetekrlG~AeRe-li~taa~nfLtPlRnFlE--GD~KTI~KERklLqnkRLDLDAcKsRLKKAKaae--~q 185 (375)
T KOG3725|consen 111 YGSALIKVAETEKRLGQAERE-LIGTAATNFLTPLRNFLE--GDMKTIQKERKLLQNKRLDLDACKSRLKKAKAAE--LQ 185 (375)
T ss_pred chHHHHHHHHHHHHhhHHHHH-HHHHHHHHhHHHHHHHhh--ccHHHHHHHHHHHhhcccChHHHHHHHHHhhhhh--hh
Confidence 567788888888888877655 444444578888887753 34444444454333 35666766776655532 22
Q ss_pred ccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 257 NKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQT---ANNHLRSDLERWRLEKKNDLKK 333 (357)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~---i~~~~~~El~rF~~~k~~~l~~ 333 (357)
...+.+ .++|+ .|+..|+++..++.+|+. |+..+.+-|.-=| ... -+
T Consensus 186 ~~rN~~----------~s~~~----------------~ie~aEqelRvaQ~EFDrQaEiTrLLLEGIsstH---~nh-Lr 235 (375)
T KOG3725|consen 186 TVRNSK----------TSGGF----------------TIEQAEQELRVAQAEFDRQAEITRLLLEGISSTH---NNH-LR 235 (375)
T ss_pred cccccc----------ccCcc----------------hHhHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhh---hhH-HH
Confidence 111011 11222 344455555555555554 4444555544433 223 34
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy18202 334 ILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 334 ~l~~~a~~qi~~~~~~~~ 351 (357)
.|.+|++.|..||-++..
T Consensus 236 CL~dFVeaQmtyYAQcyq 253 (375)
T KOG3725|consen 236 CLRDFVEAQMTYYAQCYQ 253 (375)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 678899999888776543
|
|
| >cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase | Back alignment and domain information |
|---|
Probab=92.84 E-value=6.6 Score=34.93 Aligned_cols=95 Identities=16% Similarity=0.151 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHhhCCchh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGYEPQ----LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARR 231 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~E~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R 231 (357)
.++++..+..++..+..-+..+.+ +..++..+-.-.+.++..... .++++...+.+.|.-+......++..+..-
T Consensus 35 EkEYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~-~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~ 113 (234)
T cd07686 35 DKEYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKT-HAEELNSGPLHRLTMMIKDKQQVKKSYIGV 113 (234)
T ss_pred HHHHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666554332222211 223444444444444444333 444454455555655555555544333222
Q ss_pred -HHHHHHHHH-HHHHHHHHHHH
Q psy18202 232 -DVIQAEHDM-CGEELQKKTAE 251 (357)
Q Consensus 232 -~~~~~~~~~-~~~~l~kk~~~ 251 (357)
.++..++.. ....+.|.+..
T Consensus 114 ~~kl~~e~~~~~~~~l~K~K~~ 135 (234)
T cd07686 114 HQQIEAEMYKVTKTELEKLKCS 135 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 333333332 33445555544
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran |
| >cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins | Back alignment and domain information |
|---|
Probab=92.18 E-value=8.3 Score=34.45 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=31.7
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNH--------------LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~--------------~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
..+++++.++...+..++.+..+|...... +...++.++..|..-|+..|-.||..
T Consensus 153 ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~y~n~ 222 (239)
T cd07647 153 KEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATACQVFQNMEEERIKFLRNALWVHCNL 222 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666666666665555555554333222 33455666666666666666666643
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. |
| >PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch | Back alignment and domain information |
|---|
Probab=91.94 E-value=6.2 Score=32.48 Aligned_cols=81 Identities=20% Similarity=0.343 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhh
Q psy18202 215 KDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTA 294 (357)
Q Consensus 215 ~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~ 294 (357)
......+..+-++|..|+.-+...+.+...+.+...+..+|... ++.|+.+
T Consensus 31 ~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~-----------------------------~~rL~~~ 81 (151)
T PF11559_consen 31 DNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQND-----------------------------VERLKEQ 81 (151)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----------------------------HHHHHHH
Confidence 44566777788888888888888888888888888877776643 4455555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 295 IPKLTSQLEICDEKLQTANNHLRSDLERWR 324 (357)
Q Consensus 295 i~~le~~~~~~~~~~~~i~~~~~~El~rF~ 324 (357)
+++++.++..++.+.......+..+....+
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444444444333333
|
pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions. |
| >COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only] | Back alignment and domain information |
|---|
Probab=91.62 E-value=16 Score=36.62 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhh-----h---cCCHHHHHHHHHHHHHHHHHHHcCccc
Q psy18202 3 FPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL-----N---RYSKEFILCRMKLLDQFLRRVTSHPVL 74 (357)
Q Consensus 3 f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~-----~---~~~~~fie~R~~~L~~fL~~i~~hp~L 74 (357)
.....-+|.+||++|..+...+...+|.+..||+|.+.....+. . .-... +..|...++-++.++.++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~-~~s~~~~~~y~i~~~~n~~~f 165 (524)
T COG5391 87 IAIHDSKIHSRASEFRSLRDMLSLLLPTSLQPPLSTSHTILDYFISSTVSNPQSLTLL-VDSRDKHTSYEIITVTNLPSF 165 (524)
T ss_pred ccCCccccccchhhhhhhhhhhhhcCchhcCCCCcccccchHhHhhhccccchhcccc-cccCCCcceeeEEEeecCccc
Confidence 34456689999999999999999999999999999998753211 0 00001 334455556666677777777
Q ss_pred cCChhh
Q psy18202 75 SVNSHA 80 (357)
Q Consensus 75 ~~~~~~ 80 (357)
......
T Consensus 166 ~~~~~~ 171 (524)
T COG5391 166 QLRESR 171 (524)
T ss_pred cccccc
Confidence 666553
|
|
| >cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases | Back alignment and domain information |
|---|
Probab=91.11 E-value=11 Score=33.71 Aligned_cols=141 Identities=18% Similarity=0.186 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q psy18202 181 SSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN-- 257 (357)
Q Consensus 181 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~-- 257 (357)
+.++..+-...+.++..... .++.+...+.++|.-+......++ .......++..++.....+|++.+...+++-.
T Consensus 64 ~~sW~~iL~ete~~A~~~~~-~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~ 142 (237)
T cd07657 64 SKSWKEIMDSTDQLSKLIKQ-HAEALESGTLDKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDY 142 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333 455555566666665555555544 33344444455555555555555544322211
Q ss_pred ---------cCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHH-------------
Q psy18202 258 ---------KDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNH------------- 315 (357)
Q Consensus 258 ---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~------------- 315 (357)
...+. ......+++++.+..+...+...++.++-..-..
T Consensus 143 e~Ar~k~e~a~~~~-------------------~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l~~aN~~q~~yY~~~l 203 (237)
T cd07657 143 KAAKSKFEEAVVKG-------------------GRGGRKLDKARDKYQKACRKLHLCHNDYVLALLEAQEHEEDYRTLLL 203 (237)
T ss_pred HHHHHHHHHHHhhc-------------------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 10000 0112456667777666666666666665443333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 316 --LRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 316 --~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
+...++.++..+...++++|..|++.
T Consensus 204 P~ll~~lQ~l~E~ri~~~k~~l~~~~~~ 231 (237)
T cd07657 204 PGLLNSLQSLQEEFITQWKKILQEYLRY 231 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666666666666666666653
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.90 E-value=17 Score=38.11 Aligned_cols=37 Identities=22% Similarity=0.434 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 313 NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 313 ~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
...+.+|++++... ...|+..+.+ +...+++.+..++
T Consensus 634 Er~~~~EL~~~~~~-l~~l~~si~~-lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 634 EREFKKELERMKDQ-LQDLKASIEQ-LKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHh
Confidence 34456777777764 5667766666 4555555444443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG1451|consensus | Back alignment and domain information |
|---|
Probab=90.69 E-value=20 Score=35.98 Aligned_cols=171 Identities=13% Similarity=0.185 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-----hCCchh----HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy18202 139 YEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTW-----AGYEPQ----LSSVIRQVSKAVDTTASLHKNLLIEPFHEH 209 (357)
Q Consensus 139 ~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l-----~~~E~~----l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (357)
...++.+.+-...++...++++.+...|+..++.+ |..|++ ++..|+.+|..+..+-+.--. +..+..+.
T Consensus 33 nkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f~f~~igd~~tdde~~ia~slkefa~ll~~ve~er~~-~v~~Ase~ 111 (812)
T KOG1451|consen 33 NKFIKELIKDGKELISALKNLSSAVRKFAQTLQEFKFECIGDAETDDEIFIATSLKEFASLLNQVEDERMR-MVGNASES 111 (812)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhheeeeccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHH
Confidence 34445556666677777777888888888877765 333433 788889999888777654322 33333346
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHH
Q psy18202 210 NSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLE 289 (357)
Q Consensus 210 l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~ 289 (357)
+.+||..+....-. +++.+.++.. ++-+|-=..+++-...++ .|
T Consensus 112 li~PlekFRkEqIG---~~KE~KkKyd------Ke~ekfy~~LekHLhLSs-------------------------kk-- 155 (812)
T KOG1451|consen 112 LIEPLEKFRKEQIG---TLKEEKKKYD------KESEKFYQTLEKHLHLSS-------------------------KK-- 155 (812)
T ss_pred HHhHHHHHHHHHhh---hhHHHHhhhh------hhhHHHHHHHHHHhcccc-------------------------ch--
Confidence 67777655322111 2222222111 001111111232222210 01
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 290 KLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 290 ~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
+.++.++..+++.-...|=..+-.-.-|++..+..+.-++-+-|..|...-..++.-
T Consensus 156 --esqlqeAD~Qvd~~r~nFfe~SL~YV~~vQeVQErk~FefVEpllafl~slf~f~h~ 212 (812)
T KOG1451|consen 156 --ESQLQEADAQVDTQRKNFFEASLQYVAEVQEVQERKRFEFVEPLLAFLYSLFSFFHV 212 (812)
T ss_pred --hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhh
Confidence 334445555555555555444444456788888888888888888888777666544
|
|
| >cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins | Back alignment and domain information |
|---|
Probab=90.46 E-value=12 Score=33.23 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 318 SDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 318 ~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
..++.+...|..-|+..|..|+.
T Consensus 196 ~~~Q~lEe~Ri~~lk~~l~~~a~ 218 (236)
T cd07651 196 DDFQDLEEERIQFLKSNCWTFAN 218 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation |
| >PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=90.11 E-value=36 Score=38.07 Aligned_cols=49 Identities=20% Similarity=0.275 Sum_probs=29.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKI 334 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~ 334 (357)
+.++.++..+..++.....++.+|+.....+..+..++...+......+
T Consensus 359 ~~~~~l~~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~ 407 (1201)
T PF12128_consen 359 NELENLQEQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEI 407 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666666666666555555555554443333
|
|
| >cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=89.81 E-value=14 Score=33.04 Aligned_cols=56 Identities=9% Similarity=0.041 Sum_probs=32.4
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRS--------------DLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~--------------El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+..+++++.++......++.+..+|...-+.+.. -++.+..+|..-|+.+|-.|+.
T Consensus 152 ~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~~~~Q~lEeeRi~f~K~~lw~~~n 221 (242)
T cd07671 152 PKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTCEVFQLQEDDRITILRNALWVHCN 221 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556777777777777777777776555443333 3344444555555555555544
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR |
| >KOG2273|consensus | Back alignment and domain information |
|---|
Probab=88.88 E-value=27 Score=34.91 Aligned_cols=196 Identities=17% Similarity=0.182 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHH--HHH-HHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 132 SQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSS--VIR-QVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 132 ~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~--~l~-~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
...+.+....+..+......+.+....+......++..+..++..-..++. ... .++..+..+...... +.... .
T Consensus 273 ~~~f~e~~~~i~~l~~~l~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~~~~l~~~~~~~~~~~~~-~~~~~-e 350 (503)
T KOG2273|consen 273 DKEFTEKKEKIDKLEQQLKKLSKQVQRLVKRRRELASNLAELGKALAQLSALEGETDELSEALSGLAKVIES-LSKLL-E 350 (503)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH-HHHHH-H
Confidence 455667777777777777776666666666666666666665443332221 111 333333333333222 21111 1
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHH
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRL 288 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki 288 (357)
.+. ...++..+...+++.+...+.+...++...+.+.+.......+.... .. ...+. .+.
T Consensus 351 ~~~-~~~~~~~~~~~l~~~i~~~~~~k~~~~~r~~~~~~~~~~~~~~~~~~---e~-----------~~~~~-----~~~ 410 (503)
T KOG2273|consen 351 KLT-AEKDSKKLAEQLREYIRYLESVKSLFEQRSKALQKLQEAQRELSSKK---EQ-----------LSKLK-----KKN 410 (503)
T ss_pred Hhh-hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HH-----------HHHHH-----Hhh
Confidence 111 66888889999999999988887777776665555544444443320 00 00000 000
Q ss_pred HH--HHhhHhHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 289 EK--LSTAIPKLTSQLEICDEKLQTANNHLR-SDLE--RWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 289 ~~--l~~~i~~le~~~~~~~~~~~~i~~~~~-~El~--rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.. -..+++..+.++.....+.+.++..+. .++. .+...-..+ +..|-..+..-.+.++..|
T Consensus 411 ~~~~~~~k~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e----~~~f~~~~~~d~~~~~~~~ 476 (503)
T KOG2273|consen 411 RSSFGFDKIDLAEKEIEKLEEKVNELEELLALKELELDEISERIRAE----LERFEESRRQDFKESLKKY 476 (503)
T ss_pred hhhhccchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 00 123335555555555566666665543 3333 554443333 6666666666555555555
|
|
| >PRK11546 zraP zinc resistance protein; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=6.2 Score=32.15 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHH
Q psy18202 236 AEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 236 ~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~ 307 (357)
.+-..+.+.|-.|+.+++.|..+ ..|++.+|.+|..||.+|..++.....
T Consensus 61 ~~t~~LRqqL~aKr~ELnALl~~----------------------~~pD~~kI~aL~kEI~~Lr~kL~e~r~ 110 (143)
T PRK11546 61 AQTSALRQQLVSKRYEYNALLTA----------------------NPPDSSKINAVAKEMENLRQSLDELRV 110 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556677788888888765 125678999999999988876664443
|
|
| >cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes | Back alignment and domain information |
|---|
Probab=86.28 E-value=20 Score=30.46 Aligned_cols=66 Identities=12% Similarity=0.230 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAGYE-PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA 223 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~~E-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a 223 (357)
.+++..+..++..+..-.... ..+..++..+....+.++..+.. +++.+...+.+++..+......
T Consensus 31 ~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~-~a~~l~~~i~~~~~~~~~~~~~ 97 (191)
T cd07610 31 EEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEE-LSEKLSQLIREPLEKVKEDKEQ 97 (191)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445544433211111 13677777777777777776555 5554544556666655554443
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein. |
| >cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature | Back alignment and domain information |
|---|
Probab=85.98 E-value=19 Score=29.99 Aligned_cols=69 Identities=6% Similarity=0.115 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----CchhHHHHHHHHHHHHHHHHH
Q psy18202 128 FEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----YEPQLSSVIRQVSKAVDTTAS 196 (357)
Q Consensus 128 f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~E~~l~~~l~~~~~~~~~~~~ 196 (357)
|..++..++++....+.+......+......++..+.++|..+...+. .-..++..+..++........
T Consensus 2 ~~~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~ 75 (194)
T cd07307 2 LDELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQ 75 (194)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777776667777777777777777776655432 122255556666655555544
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F- |
| >PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane | Back alignment and domain information |
|---|
Probab=85.75 E-value=18 Score=29.49 Aligned_cols=97 Identities=6% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 161 SEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDM 240 (357)
Q Consensus 161 ~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~ 240 (357)
.++..+..++..|-..-.++..-+..|-+..+.+...++. ..+.....|...+..|......+.+.=.+-..+-..++.
T Consensus 19 ~~~~pv~~al~~ld~ss~g~~~~~~~f~~~~~~~~~~L~~-vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ 97 (142)
T PF04048_consen 19 DDFNPVELALSLLDDSSVGRAHRYQEFEELKKRIEKALQE-VVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQE 97 (142)
T ss_pred CCCcHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666665544434556667777777777776666 433344588899999999999888887777777777888
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy18202 241 CGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 241 ~~~~l~kk~~~~~kL~~~ 258 (357)
+...|..++.++.+|-..
T Consensus 98 ak~~L~~~~~eL~~L~~~ 115 (142)
T PF04048_consen 98 AKSLLGCRREELKELWQR 115 (142)
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 888887777777776543
|
The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst |
| >cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92) | Back alignment and domain information |
|---|
Probab=85.71 E-value=24 Score=30.93 Aligned_cols=115 Identities=8% Similarity=0.054 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy18202 126 SEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNT-WAGYEPQLSSVIRQVSKAVDTTASLHKNLLIE 204 (357)
Q Consensus 126 ~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~-l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~ 204 (357)
..+..+..++.++...+..+.+...++.....+++.++..+|.+=+. |+..-.+++..+..+++..+.-.......+.
T Consensus 11 ~~i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~- 89 (211)
T cd07598 11 ERITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEVERLEAKVV- 89 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 46677888888888888888888888888888888777777765422 2223334666666666655555443222122
Q ss_pred hhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 205 PFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEE 244 (357)
Q Consensus 205 ~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~ 244 (357)
..|.+....+...-..+|.....|++.....+...+.
T Consensus 90 ---epLk~Y~~l~k~~k~~~K~~~~ar~~~~~~~~~lekl 126 (211)
T cd07598 90 ---QPLALYGTICKHARDDLKNTFTARNKELKQLKQLEKL 126 (211)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666677888887777765444443
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. |
| >cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins | Back alignment and domain information |
|---|
Probab=85.47 E-value=28 Score=31.49 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=28.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 293 TAIPKLTSQLEICDEKLQTANNHL---RSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~~~~i~~~~---~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
.+++.++..+..+....+...+.- ...+..++.....+|..++..+-+.+.+.-.-.-++
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~~lk~~ 230 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLDFFKEI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544443332 234445554555555555555555444443333333
|
F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=81.73 E-value=59 Score=32.44 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=29.3
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 287 RLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRL------EKKNDLKKILLKIADQQIAYYQQRS 350 (357)
Q Consensus 287 ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~------~k~~~l~~~l~~~a~~qi~~~~~~~ 350 (357)
++..++.....++++++.+..+-+....++.+=+.+|+. .-+.||+.-+ .|+-.+.+..+..+
T Consensus 610 er~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~El-q~~~~~~~~L~~~i 678 (741)
T KOG4460|consen 610 ERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKEL-QLIPDQLRHLGNAI 678 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 333333333444444444444444444444444444432 2345666666 56655555544443
|
|
| >cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p | Back alignment and domain information |
|---|
Probab=81.71 E-value=35 Score=29.85 Aligned_cols=67 Identities=7% Similarity=0.253 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH--HHhhCCchhHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVL--NTWAGYEPQLSSVIRQVSKAVDT 193 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~--~~l~~~E~~l~~~l~~~~~~~~~ 193 (357)
.+......+..+...+..+.+.-..+.....+++.++..+|..= ..++..-..++....+++.....
T Consensus 12 ~i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~ 80 (216)
T cd07627 12 YLDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLER 80 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777777766677777777776666666543 22332223344444444444443
|
BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in |
| >PF15642 Tox-ODYAM1: Toxin in Odyssella and Amoebophilus | Back alignment and domain information |
|---|
Probab=80.87 E-value=43 Score=30.22 Aligned_cols=89 Identities=21% Similarity=0.271 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCCCCCCCcccCCCcccccCCccH-HHHHHHHhhHhHHHHHHHHHH
Q psy18202 229 ARRDVIQAEHDMCGEELQKKTAEKE-QLTNKDSDSSSPTSSTATSSTNSYSLWKSTSE-DRLEKLSTAIPKLTSQLEICD 306 (357)
Q Consensus 229 ~~R~~~~~~~~~~~~~l~kk~~~~~-kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~ki~~l~~~i~~le~~~~~~~ 306 (357)
.+|..+-..|+...+.|++++.... +|.-. + ..+ +=++++..-..+++++.+-.+
T Consensus 120 Er~~~iTt~~qq~ee~Le~k~~~is~qL~~~-~----------------------~~r~EL~~~~~~l~~QL~Eeee~y~ 176 (385)
T PF15642_consen 120 ERRKKITTSHQQHEEALEKKKEDISRQLQVI-P----------------------KHRVELKQKQDDLTKQLEEEEEIYK 176 (385)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHhcc-h----------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455567777888888877654 33311 0 001 111222222223333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 307 EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIA 344 (357)
Q Consensus 307 ~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~ 344 (357)
.-+..+..-...-++.|..+| ++.+.+|..+++.
T Consensus 177 ~alk~l~nPaq~AlEDFYdWK----RSVFhdFtKLHLG 210 (385)
T PF15642_consen 177 AALKRLTNPAQAALEDFYDWK----RSVFHDFTKLHLG 210 (385)
T ss_pred HHHHHhcChHHHHHHHHHHHH----HHHHHHHHHHhhc
Confidence 334445555566777777776 3455666666554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 357 | ||||
| 3iq2_A | 138 | Human Sorting Nexin 7, Phox Homology (Px) Domain Le | 3e-17 | ||
| 2csk_A | 146 | Solution Structure Of Px Domain From Human Snx12 Le | 5e-06 | ||
| 4akv_A | 386 | Crystal Structure Of Human Sorting Nexin 33 (Snx33) | 1e-05 | ||
| 3dyu_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), H32 Leng | 2e-05 | ||
| 2raj_A | 392 | So4 Bound Px-Bar Membrane Remodeling Unit Of Sortin | 2e-05 | ||
| 3hpc_X | 161 | Crystal Structure Of Snx5-Px Domain In P21 Space Gr | 4e-05 | ||
| 3hpb_A | 161 | Crystal Structure Of Snx5-Px Domain In P212121 Spac | 5e-05 | ||
| 2i4k_A | 128 | Solution Structure Of The Px Domain Of Sorting Nexi | 5e-05 | ||
| 1ocs_A | 162 | Crystal Structure Of The Yeast Px-Doamin Protein Gr | 1e-04 | ||
| 3dyt_A | 366 | Crystal Structure Of Snx9px-Bar (230-595), C2221 Le | 5e-04 | ||
| 2rai_A | 392 | The Px-Bar Membrane Remodeling Unit Of Sorting Nexi | 7e-04 |
| >pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain Length = 138 | Back alignment and structure |
|
| >pdb|2CSK|A Chain A, Solution Structure Of Px Domain From Human Snx12 Length = 146 | Back alignment and structure |
|
| >pdb|4AKV|A Chain A, Crystal Structure Of Human Sorting Nexin 33 (Snx33) Length = 386 | Back alignment and structure |
|
| >pdb|3DYU|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), H32 Length = 366 | Back alignment and structure |
|
| >pdb|2RAJ|A Chain A, So4 Bound Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
| >pdb|3HPC|X Chain X, Crystal Structure Of Snx5-Px Domain In P21 Space Group Length = 161 | Back alignment and structure |
|
| >pdb|3HPB|A Chain A, Crystal Structure Of Snx5-Px Domain In P212121 Space Group Length = 161 | Back alignment and structure |
|
| >pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1 Length = 128 | Back alignment and structure |
|
| >pdb|1OCS|A Chain A, Crystal Structure Of The Yeast Px-Doamin Protein Grd19p (Sorting Nexin3) Complexed To Phosphatidylinosytol-3-Phosphate. Length = 162 | Back alignment and structure |
|
| >pdb|3DYT|A Chain A, Crystal Structure Of Snx9px-Bar (230-595), C2221 Length = 366 | Back alignment and structure |
|
| >pdb|2RAI|A Chain A, The Px-Bar Membrane Remodeling Unit Of Sorting Nexin 9 Length = 392 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* Length = 366 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 2e-38
Identities = 55/357 (15%), Positives = 113/357 (31%), Gaps = 69/357 (19%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHI-IPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
T V RY F WL+ +L+ S I IP LP+K R+ +EFI RM+ L +
Sbjct: 50 TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAW 105
Query: 65 LRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLTNI-YTTMSLRH 123
+ R+ HPV+S + FL + + K ++ + L
Sbjct: 106 MTRMCRHPVISESEVFQQFLNFRDEKEWKTGKRKAERDELAGVMIFSTMEPEAPDLDLVE 165
Query: 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQ--------FAIVLNTWAG 175
+ E ++ + + + +G +K + + +Q A V ++
Sbjct: 166 IEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRCTGPLPKEYQKIGKALQSLATVFSSSGY 225
Query: 176 YEPQ-LSSVIRQVSKAVDTTASL---HKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARR 231
L+ I + K + ASL + E +Y ++ ++
Sbjct: 226 QGETDLNDAITEAGKTYEEIASLVAEQPKKDLHFLME----CNHEYKGFLGCFPDIIGTH 281
Query: 232 DVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKL 291
K EK + +KL
Sbjct: 282 ---------------KGAIEKVK--------------------------------ESDKL 294
Query: 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ +++ + L++++ + + D ++ +QQ+ +Y+
Sbjct: 295 VATSKITLQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYET 351
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} Length = 386 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 3e-38
Identities = 48/356 (13%), Positives = 110/356 (30%), Gaps = 68/356 (19%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFL 65
V RRY F WL+N+L+ +P LPEK + R+ ++FI R + L ++
Sbjct: 71 AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQA----TGRFEEDFIEKRKRRLILWM 126
Query: 66 RRVTSHPVLSVNSHAIIFLTAK-LAEFSMHKKHSPGLLNKMSESFYNLTNIYTTMSLRHH 124
+TSHPVLS FL+ ++ M K+ + + L+
Sbjct: 127 DHMTSHPVLSQYEGFQHFLSCLDDKQWKMGKRRAEKDEMVGASFLLTFQIPTEHQDLQDV 186
Query: 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKER-KDYVSEAHQFAIVLNTWA--------G 175
+ F + + + + + + L ++ + E + +
Sbjct: 187 EDRVDTFKAFSKKMDDSVLQLSTVASELVRKHVGGFRKEFQKLGSAFQAISHSFQMDPPF 246
Query: 176 YEPQLSSVIRQVSKAVDTTASLH---KNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRD 232
L+S I + + + + + + Y + ++ +
Sbjct: 247 CSEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLD----TLSLYQGLLSNFPDIIHLQK 302
Query: 233 VIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292
A+ +++S
Sbjct: 303 GAFAKVKES-----------------------------------------------QRMS 315
Query: 293 TAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ + + + + L++++ + ++ D K ++ QQI +YQ+
Sbjct: 316 DEGRMVQDEADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQR 371
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} Length = 138 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-30
Identities = 45/96 (46%), Positives = 57/96 (59%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKL 60
EF +E VRRRY DF+WL KL E P+ IIPPLPEK + + R++ +FI R K
Sbjct: 38 GEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKA 97
Query: 61 LDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKK 96
L +FL R+ HP L+ N IFLTA+ E S H
Sbjct: 98 LHKFLNRIADHPTLTFNEDFKIFLTAQAWELSSHAH 133
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 146 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 6e-26
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 6/103 (5%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSL-----LEHLNRYSKEFIL 55
P F E VRRRY+DF WL N+L ++PPLP K + + FI
Sbjct: 40 PIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDEGIFEESFIE 98
Query: 56 CRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHS 98
R + L+QF+ ++ HP+ +FL + + + S
Sbjct: 99 ERRQGLEQFINKIAGHPLAQNERCLHMFLQEEAIDRNYVPGKS 141
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 3e-23
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSH--IIPPLPEKHSL------LEHLNRYSKE 52
P F + V+RR++DF+ L+ KL E + I+PP PEK + + + S E
Sbjct: 33 PLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAE 92
Query: 53 FILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAK 87
F+ R L+++L+R+ +HP + + FL +
Sbjct: 93 FLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* Length = 162 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 4e-23
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETL-----PSHIIPPLPEKHSLLEHLNRYSKEFIL 55
P F VRRRY+DF + L++ + P ++P LP K L NR+S E I
Sbjct: 69 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILL---SNRFSNEVIE 125
Query: 56 CRMKLLDQFLRRVTSHPVLSVNSHA-IIFLTAK 87
R + L+ +++ V HP+L S + F+ A+
Sbjct: 126 ERRQGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 158
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A Length = 115 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-21
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
+ R RY+ + LH +L + ++++P P K L + + R + L+++
Sbjct: 31 NGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPK-----KLFSLTPAEVEQRREQLEKY 85
Query: 65 LRRVTSHPVLSVNSHAIIFLTA 86
++ V P+L + FL
Sbjct: 86 MQAVRQDPLLGSSETFNSFLRR 107
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A Length = 154 | Back alignment and structure |
|---|
Score = 85.4 bits (211), Expect = 3e-20
Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
+E V RRY +F L+N L + P + +P K + + +FI R L
Sbjct: 33 SVGRSEWFVFRRYAEFDKLYNSLKKQFP-AMALKIPAKRIF---GDNFDPDFIKQRRAGL 88
Query: 62 DQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSES 108
++F++ + +P L + FL S + +
Sbjct: 89 NEFIQNLVRYPELYNHPDVRAFLQMD--SPRHQSDPSEDEDERSTSK 133
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A Length = 161 | Back alignment and structure |
|---|
Score = 71.4 bits (174), Expect = 4e-15
Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 28/124 (22%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVET--LPSHIIPPLPEKHSLLEHLNRYSK------- 51
P F E V R++ DFVWLH+ L ET IIPP P K + K
Sbjct: 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGS 96
Query: 52 ------------------EFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSM 93
+ + FL+R++SHPVLS + + +FL + S+
Sbjct: 97 MTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYD-QDLSV 155
Query: 94 HKKH 97
+K+
Sbjct: 156 RRKN 159
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 Length = 117 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 9e-15
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 10 VRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL---NRYSKEFILCRMKLLDQFLR 66
+ +RY++F L +L + S I PEK +L+ E I R L++FL
Sbjct: 31 LYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLN 90
Query: 67 RVTSHPVLSVNSHAIIF 83
+ + S I
Sbjct: 91 ELYNDRFDSRWRDTKIA 107
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} Length = 134 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 1e-14
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
D V RRY+ F +H L P K + I R L
Sbjct: 31 TVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKK----LFGNKDERVIAERRSHL 86
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
+++LR S + S S I
Sbjct: 87 EKYLRDFFSVMLQSATSPLHINK 109
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} Length = 130 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 1e-14
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
E V+ RY+DF LH KLV LP K + + S+ + R K L
Sbjct: 44 TDGSHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKK----IIGKNSRSLVEKREKDL 98
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
+ +L+++ + FL
Sbjct: 99 EVYLQKLLAAFPGVTPRVLAHFL 121
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} Length = 128 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 1e-10
Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
V RRY++F LH ++ + +P P K L + + R + L
Sbjct: 40 LCSGRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSK-----RLPNWRTRGLEQRRQGL 91
Query: 62 DQFLRRVTSHPVL 74
+ +++ +
Sbjct: 92 EAYIQGILYLNQE 104
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A Length = 121 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-10
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 7 ECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLR 66
V R +++F LHNKL P +P P + L + K+ R L+ +L+
Sbjct: 37 PSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL---GRTHIKDVAAKRKIELNSYLQ 93
Query: 67 RVTSHPVLSVNSHAII-FLTAK 87
+ + + F
Sbjct: 94 SLMNASTDVAECDLVCTFFHGS 115
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 3e-10
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 9 IVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRV 68
V R +++F LHNKL P +P P + L + K+ R L+ +L+ +
Sbjct: 54 FVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL---GRTHIKDVAAKRKIELNSYLQSL 110
Query: 69 TS-HPVLSVNSHAIIFLT 85
+ ++ F
Sbjct: 111 MNASTDVAECDLVCTFFH 128
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-09
Identities = 60/414 (14%), Positives = 126/414 (30%), Gaps = 110/414 (26%)
Query: 6 TECIVR-RRYNDFVWLHNKL---VETLPSHIIPPLPEKHSLLEHLN--RYSKEFILCRMK 59
TE ++ ++L + + + L L + L R +K ++ +
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 60 ------LLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKHSPGLLNKMSESFYNLT 113
+ S+ V I +L + +SP + +M +
Sbjct: 160 GSGKTWVALDVCL---SYKVQCKMDFKIFWLN-------LKNCNSPETVLEMLQKLL--Y 207
Query: 114 NIYTTMSLRHHHS-----EFEQFSQYISNL-----YEK-------------ISAFE---K 147
I + R HS + L YE +AF K
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267
Query: 148 I--GTRLYKERKDYVSEAHQFAIVLN--TWAGYEPQLSSVIRQV--------SKAVDTTA 195
I TR +K+ D++S A I L+ + ++ S++ + + V TT
Sbjct: 268 ILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 196 SLHKNLLIEPFHEHNSHPMKDYLMYI--DAVKQVLARRDVIQAEHDMCGEELQKKTAEK- 252
+++ E + + D ++ D + ++ + L+ K
Sbjct: 327 PRRLSIIAESIRDGLATW--DNWKHVNCDKLTTII----------ESSLNVLEPAEYRKM 374
Query: 253 -EQLT--NKDSDSSSPTSSTATSSTNSYSLWKSTSE-------DRLEKLSTA-------- 294
++L+ + + S +W + ++L K S
Sbjct: 375 FDRLSVFPPSAHIPTILLSL---------IWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 295 --IPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346
IP + LE+ + H RS ++ + + K D ++ DQ +
Sbjct: 426 ISIPSI--YLELKVKLENEYALH-RSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 4e-05
Identities = 48/273 (17%), Positives = 76/273 (27%), Gaps = 80/273 (29%)
Query: 123 HHHSEFEQFSQYISNLYEKI-----SAFEK--------------IGTRLYKE---RKDYV 160
HHH +FE Y+ I AF + KD V
Sbjct: 4 HHHMDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 161 SEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY 220
S + L LS V K V+ ++ L+ P P MY
Sbjct: 62 SGTLRLFWTL---------LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 221 IDAVK------QVLARRDVIQAEHDMCGEELQKKTAEKEQLTN----------KDSDSSS 264
I+ QV A+ +V + + +L++ E N K
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPY---LKLRQALLELRPAKNVLIDGVLGSGK------ 163
Query: 265 PTSSTATSSTNSYSL---------W-----KSTSEDRLEKLSTAIPKLTSQLEICDEKLQ 310
+ A SY + W ++ E LE L + ++
Sbjct: 164 --TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDH 219
Query: 311 TANNHLRSDLERWRLE---KKNDLKKILLKIAD 340
++N LR + L K + LL +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL-VLL 251
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 20/146 (13%)
Query: 4 PDTECIVRRRYNDFVWLHNKLVE------TLPSHIIPPLPE-----KHSLLEHLN--RYS 50
P ++ + + LH +V+ T S + P H + HL +
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH-IGHHLKNIEHP 487
Query: 51 KEFILCRMKLLD-QFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKH---SPGLLNKMS 106
+ L RM LD +FL + H + N+ I T L + +K + + ++
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLV 545
Query: 107 ESFYNLTNIYTTMSLRHHHSEFEQFS 132
+ + + +++ + +
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 5e-04
Identities = 27/162 (16%), Positives = 57/162 (35%), Gaps = 37/162 (22%)
Query: 207 HEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAE---KEQLTNKDSDS- 262
H H+ H M + + +D++ D + K + K L+ ++ D
Sbjct: 1 HHHHHH------MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54
Query: 263 -SSPTSSTATSSTNSYSLW----KSTS------EDRLEK----LSTAI------PKLTSQ 301
S + + T W K E+ L L + I P + ++
Sbjct: 55 IMSKDAVSGTL----RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 302 LEI-CDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQ 342
+ I ++L +N + + RL+ L++ LL++ +
Sbjct: 111 MYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} Length = 149 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 9e-09
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH---------IIPPLPEKHSLLEHLNRYSKEFILC 56
++ VRR +++F L L ET P ++P L + L L
Sbjct: 39 SDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL---GRVGRTSRGLA 95
Query: 57 RMKLLDQFLRRVTSHPVLSVNSHAII-FLTAK 87
R++LL+ + RR+ + S I F +
Sbjct: 96 RLQLLETYSRRLLATAERVARSPTITGFFAPQ 127
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 Length = 143 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-08
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 13/75 (17%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSH--------IIPPLPEKHSLLEHLNRYSKEFILCR 57
++ ++ RRY F L +KL E +P LP K +E R
Sbjct: 50 SKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAK-----VYVGVKQEIAEMR 104
Query: 58 MKLLDQFLRRVTSHP 72
+ L+ +++ + S P
Sbjct: 105 IPALNAYMKSLLSLP 119
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A Length = 141 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-07
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLD 62
+E +V RR+ + H L E P PE L + R L
Sbjct: 36 SEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLT 95
Query: 63 QFLRRVTSHPVLSVNSHAII-FLTAK 87
++ + S P ++ F +
Sbjct: 96 EYCSTLMSLPTKISRCPHLLDFFKVR 121
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} Length = 127 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 8e-07
Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQF 64
+ + + + F LH++L + S +P P HL + + R + L+ +
Sbjct: 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWW----HLPFTNSD--HRRFRDLNHY 103
Query: 65 LRRVTSHP 72
+ ++ +
Sbjct: 104 MEQILNVS 111
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A Length = 156 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 5e-05
Identities = 11/91 (12%), Positives = 27/91 (29%), Gaps = 9/91 (9%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHS--------LLEHLNRYSKEFILCR 57
++R Y DF L +L++ P+ + + + R
Sbjct: 45 KTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPYVTNSITKKR 104
Query: 58 MKLLDQFLRRVTSHPVLSVNSHAII-FLTAK 87
+ L+ ++ + + P S +
Sbjct: 105 KEDLNIYVADLVNLPDYISRSEMVHSLFVVL 135
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| 3dyt_A | 366 | Sorting nexin-9; 3-helix bundle, BAR domain, PX do | 100.0 | |
| 4akv_A | 386 | Sorting nexin-33; transport protein, organelle bio | 100.0 | |
| 3hpc_X | 161 | SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosph | 99.92 | |
| 3iq2_A | 138 | Sorting nexin-7; SNX7, PHOX, protein signalling, S | 99.92 | |
| 1ocs_A | 162 | Sorting nexin GRD19; sorting protein, PX-domain, y | 99.89 | |
| 2i4k_A | 128 | Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 al | 99.88 | |
| 2csk_A | 146 | Sorting nexin 12; SNX12, PX domain, structural gen | 99.88 | |
| 3lui_A | 115 | Sorting nexin-17, SNX17; PX domain, endosome, phos | 99.86 | |
| 3p0c_A | 130 | Nischarin; structural genomics, structural genomic | 99.82 | |
| 1kmd_A | 117 | VAM7P, vacuolar morphogenesis protein VAM7; PX dom | 99.82 | |
| 1xte_A | 154 | Serine/threonine-protein kinase SGK3; CISK, PX dom | 99.8 | |
| 1h6h_A | 143 | Neutrophil cytosol factor 4; PX domain; HET: PIB; | 99.77 | |
| 2v14_A | 134 | Kinesin-like motor protein C20ORF23; plus-END kine | 99.77 | |
| 2ett_A | 128 | Sorting nexin-22; PX domain, BC019655, SNX22_human | 99.76 | |
| 2ar5_A | 121 | Phosphoinositide 3-kinase; PX domain, transferase; | 99.76 | |
| 4az9_A | 129 | Sorting nexin-24; protein transport; 1.75A {Homo s | 99.72 | |
| 1kq6_A | 141 | NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha | 99.71 | |
| 2iwl_X | 140 | Phosphatidylinositol-4-phosphate 3-kinase C2 domai | 99.7 | |
| 2v6v_A | 156 | BUD emergence protein 1; homotypic fusion, regulat | 99.63 | |
| 2fic_A | 251 | Bridging integrator 1; BAR domain, homodimer, coil | 99.59 | |
| 1uru_A | 244 | Amphiphysin; endocytosis, coiled-coil, membrane cu | 99.54 | |
| 2l73_A | 149 | NADPH oxidase organizer 1; cell membrane, PX domai | 99.54 | |
| 2wwe_A | 127 | Phosphoinositide-3-kinase, class 2, gamma polypept | 99.36 | |
| 2dyb_A | 341 | Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid | 99.24 | |
| 4avm_A | 237 | Bridging integrator 2; protein binding, plasma mem | 99.23 | |
| 4a3a_A | 243 | Amphiphysin; structural genomics, invagination, kn | 99.14 | |
| 1zww_A | 256 | SH3-containing GRB2-like protein 2; coiled coil, t | 98.79 | |
| 2z0v_A | 240 | SH3-containing GRB2-like protein 3; helix bundle, | 98.6 | |
| 2q12_A | 265 | DIP13 alpha, DCC-interacting protein 13 alpha; APP | 98.55 | |
| 2q13_A | 385 | DCC-interacting protein 13 alpha; APPL1, BAR domai | 98.42 | |
| 1i4d_A | 224 | Arfaptin 2, partner of RAC1; coiled coil, G-protei | 98.32 | |
| 4h8s_A | 407 | DCC-interacting protein 13-beta; BAR domain, pleck | 97.85 | |
| 2ykt_A | 253 | Brain-specific angiogenesis inhibitor 1-associate | 97.39 | |
| 3plt_A | 234 | Sphingolipid long chain base-responsive protein L; | 97.04 | |
| 2d1l_A | 253 | Metastasis suppressor protein 1; IRSP53, actin bin | 97.0 | |
| 3haj_A | 486 | Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, | 96.97 | |
| 4dyl_A | 406 | Tyrosine-protein kinase FES/FPS; structural genomi | 96.65 | |
| 2v0o_A | 276 | FCHO2, FCH domain only protein 2; lipid-binding pr | 96.61 | |
| 2efl_A | 305 | Formin-binding protein 1; EFC domain, structural g | 96.61 | |
| 3abh_A | 312 | Pacsin2, protein kinase C and casein kinase substr | 96.51 | |
| 3aco_A | 350 | Pacsin2, protein kinase C and casein kinase substr | 96.5 | |
| 2efk_A | 301 | CDC42-interacting protein 4; EFC domain, structura | 96.41 | |
| 3i2w_A | 290 | Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocyt | 96.13 | |
| 2x3v_A | 337 | Syndapin I, protein kinase C and casein kinase sub | 95.96 | |
| 3ok8_A | 222 | Brain-specific angiogenesis inhibitor 1-associate | 95.34 | |
| 3m3w_A | 320 | Pacsin3, protein kinase C and casein kinase II sub | 94.35 | |
| 3g9g_A | 287 | Suppressor of yeast profilin deletion; SYP1, BAR d | 93.77 | |
| 3iv1_A | 78 | Tumor susceptibility gene 101 protein; coiled_COIL | 80.17 |
| >3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-45 Score=347.20 Aligned_cols=291 Identities=18% Similarity=0.296 Sum_probs=228.4
Q ss_pred CcceeecchhhHHHHHHHHHHhCCC-CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPS-HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~-~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
++|.|+||||||.|||+.|...||+ ++|||||+|..+ ++++++||++||++|++||++|+.||+|++|+.|+.||
T Consensus 50 ~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP~K~~~----g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~~~~~~~FL 125 (366)
T 3dyt_A 50 TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLPDKQVT----GRFEEEFIKMRMERLQAWMTRMCRHPVISESEVFQQFL 125 (366)
T ss_dssp CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC---------------CHHHHHHHHHHHHHHHHTCTTGGGSHHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCcCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHhh
Confidence 4789999999999999999999999 999999999987 77899999999999999999999999999999999999
Q ss_pred ccccc-chhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q psy18202 85 TAKLA-EFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKE- 155 (357)
Q Consensus 85 ~~~~~-~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~- 155 (357)
+.++. .|....+ .|+++++.+.. +.. ...+.+.+++|+.++.|+..++..++.+.+.+.+++++
T Consensus 126 ~~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 198 (366)
T 3dyt_A 126 NFRDEKEWKTGKRKAERDELAGVMIFSTMEP----EAP---DLDLVEIEQKCEAVGKFTKAMDDGVKELLTVGQEHWKRC 198 (366)
T ss_dssp HCSSHHHHHHHHHHHHTCCCCGGGGGGGEEE----SSC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHhhhhccCcccchHHHHHhcC----CCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98752 2432211 23444433321 111 11245567889999999999999999999999999877
Q ss_pred hHHHHHHHHHHHHHHHHhhCC------c--hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHH
Q psy18202 156 RKDYVSEAHQFAIVLNTWAGY------E--PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQV 227 (357)
Q Consensus 156 ~~~l~~~~~~~~~~~~~l~~~------E--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~ 227 (357)
..+++.++..+|.+|..||.+ + ++|+.++..+|++++.++++..+ ++......|+++|++|.+++.++|++
T Consensus 199 ~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~-qa~~d~~~l~E~L~~Y~~~l~avKd~ 277 (366)
T 3dyt_A 199 TGPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAE-QPKKDLHFLMECNHEYKGFLGCFPDI 277 (366)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHH-SGGGTHHHHHHHHHHHHHHHTTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888887752 2 34999999999999999999888 67666779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHH
Q psy18202 228 LARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDE 307 (357)
Q Consensus 228 l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~ 307 (357)
|.+|..++..+..+. ++... ++. +. .+++.++.
T Consensus 278 l~~r~~aL~k~~e~~-----------kl~~~--~K~--------------------~~--------------~~~~~~~~ 310 (366)
T 3dyt_A 278 IGTHKGAIEKVKESD-----------KLVAT--SKI--------------------TL--------------QDKQNMVK 310 (366)
T ss_dssp HHHHHHHHHHHHTHH-----------HHHHT--TSS--------------------CH--------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----------HHHhc--cCc--------------------ch--------------hHHHHHHH
Confidence 999998766555432 22222 110 01 13566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 308 KLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 308 ~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+++.|+..++.|+.||+.+|..||+.+|.+|++.||.+|++.++.|+.
T Consensus 311 r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~~qi~~~k~~~~~w~~ 358 (366)
T 3dyt_A 311 RVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQ 358 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999964
|
| >4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-45 Score=344.18 Aligned_cols=291 Identities=17% Similarity=0.295 Sum_probs=230.8
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
++|.|+||||||.|||+.|...||+++|||||+|..+ ++++++||++||++|++||++|+.||+|++|+.|+.||+
T Consensus 71 ~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~----g~~~~~fie~Rr~~Le~fL~~i~~~p~l~~s~~~~~FL~ 146 (386)
T 4akv_A 71 AASPVYRRYKHFDWLYNRLLHKFTVISVPHLPEKQAT----GRFEEDFIEKRKRRLILWMDHMTSHPVLSQYEGFQHFLS 146 (386)
T ss_dssp SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCCCCC----------CCTTTHHHHHHHHHHHHHHTCTTGGGCHHHHHHHS
T ss_pred CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCCCCccc----CCCCHHHHHHHHHHHHHHHHHHhCCHhhhCCcHHHHHhC
Confidence 5799999999999999999999999999999999987 778999999999999999999999999999999999999
Q ss_pred cccc-chhhccc-------CCCCccccchhhhhhhhhhhccccccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy18202 86 AKLA-EFSMHKK-------HSPGLLNKMSESFYNLTNIYTTMSLRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKER- 156 (357)
Q Consensus 86 ~~~~-~~~~~~k-------~~~~~~~~~~~~~~~~~~~~~~~~~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~- 156 (357)
.++. .|...++ .|+++++.+.. +. ..+++.+.+++|+.++.|+..++..+..+.+.++++++++
T Consensus 147 ~~~~~~w~~~~r~~~~~~~~g~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~r~~ 219 (386)
T 4akv_A 147 CLDDKQWKMGKRRAEKDEMVGASFLLTFQI----PT---EHQDLQDVEDRVDTFKAFSKKMDDSVLQLSTVASELVRKHV 219 (386)
T ss_dssp CCCSHHHHHHHHHHHTCSCCGGGGGGTSBC----CS---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhhHHHhhhhccCCCccchHHHHHhcC----Cc---cccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8742 2332211 13334433211 11 1122556778999999999999999999999999998874
Q ss_pred HHHHHHHHHHHHHHHHhhC-------Cc-hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWAG-------YE-PQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVL 228 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~~-------~E-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l 228 (357)
.++..++..+|.++..|+. .+ ++|+.++..+|++++.++++..+ ++......|.++|++|.+++.++|++|
T Consensus 220 ~~~~~e~~~l~~~l~~l~~~~~~~~~~~~~~Ls~aL~~l~~~~e~i~~l~~~-Qa~~d~~~L~E~L~~Y~~ll~s~Kdll 298 (386)
T 4akv_A 220 GGFRKEFQKLGSAFQAISHSFQMDPPFCSEALNSAISHTGRTYEAIGEMFAE-QPKNDLFQMLDTLSLYQGLLSNFPDII 298 (386)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHHH-GGGTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667776666654 23 34999999999999999999888 777777899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHH
Q psy18202 229 ARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEK 308 (357)
Q Consensus 229 ~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~ 308 (357)
.+|..++..+..++ ++... +| ++ +.+++.++.+
T Consensus 299 ~~R~~aL~k~~ea~-----------kl~~~--~K--------------------~~--------------~~~~~e~~~r 331 (386)
T 4akv_A 299 HLQKGAFAKVKESQ-----------RMSDE--GR--------------------MV--------------QDEADGIRRR 331 (386)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHT--TS--------------------SC--------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHh--CC--------------------cc--------------HHHHHHHHHH
Confidence 99988766555442 22222 11 01 1234557889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 309 LQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 309 ~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
++.|+..++.|+.+|+.+|..||+.+|.+|++.||.+|++.++.|+.
T Consensus 332 ~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~ 378 (386)
T 4akv_A 332 CRVVGFALQAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEK 378 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999964
|
| >3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-26 Score=189.24 Aligned_cols=96 Identities=34% Similarity=0.613 Sum_probs=80.3
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHH--hCCCCCCCCCCCccccch---------h-------------hhcCCHHHHHH
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVE--TLPSHIIPPLPEKHSLLE---------H-------------LNRYSKEFILC 56 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~--~~p~~~iPplP~K~~~~~---------~-------------~~~~~~~fie~ 56 (357)
|.|..+++.|+|||+||.|||++|.. .|||++|||||+|+.+.. . ...|+++||+.
T Consensus 37 p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP~K~~~~~~~~K~~~~g~~~~~~~~e~~~~~r~~~~~efie~ 116 (161)
T 3hpc_X 37 PTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAPTKPDFDGPREKMQKLGEGEGSMTKEEFAKMKQELEAEYLAV 116 (161)
T ss_dssp TTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCCCCCCCHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCCCcccccchhhhhhcccccccccchhHhhhhcccccHHHHHH
Confidence 78999999999999999999999999 899999999999998621 0 01256789996
Q ss_pred H---HHHHHHHHHHHHcCccccCChhhhccccccccchhhcccC
Q psy18202 57 R---MKLLDQFLRRVTSHPVLSVNSHAIIFLTAKLAEFSMHKKH 97 (357)
Q Consensus 57 R---~~~L~~fL~~i~~hp~L~~~~~~~~FL~~~~~~~~~~~k~ 97 (357)
| +++||+||++|+.||+|++|+.|+.||+.++ ++..+.|+
T Consensus 117 Rrkrr~~Le~FL~ri~~HP~L~~d~~~~~FL~~~~-dl~~~~k~ 159 (161)
T 3hpc_X 117 FKKTVSSHEVFLQRLSSHPVLSKDRNFHVFLEYDQ-DLSVRRKN 159 (161)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGCHHHHHHHHCCS-CSCC----
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCcHHHhhcCCCc-cchhhccC
Confidence 4 4569999999999999999999999999995 78877765
|
| >3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-25 Score=182.44 Aligned_cols=88 Identities=48% Similarity=0.818 Sum_probs=80.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhh
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHA 80 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~ 80 (357)
|.|...+|.|+||||||.|||+.|...||+++|||||+|..+.++.++++++||++||++||.||++|+.||.|++|+.|
T Consensus 38 ~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP~K~~~~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p~l~~s~~~ 117 (138)
T 3iq2_A 38 GEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFNDDFIETRRKALHKFLNRIADHPTLTFNEDF 117 (138)
T ss_dssp SSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCCCCC----CCGGGCHHHHHHHHHHHHHHHHHHHHSTTGGGCHHH
T ss_pred CCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCCcchhhccccccCCHHHHHHHHHHHHHHHHHHHcCHhhhcChHH
Confidence 57888999999999999999999999999999999999998755556789999999999999999999999999999999
Q ss_pred hccccccc
Q psy18202 81 IIFLTAKL 88 (357)
Q Consensus 81 ~~FL~~~~ 88 (357)
+.||+.++
T Consensus 118 ~~FL~~~~ 125 (138)
T 3iq2_A 118 KIFLTAQA 125 (138)
T ss_dssp HHHHHTTC
T ss_pred HhhhCCCC
Confidence 99999885
|
| >1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-24 Score=178.38 Aligned_cols=86 Identities=34% Similarity=0.596 Sum_probs=80.7
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhC-----CCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETL-----PSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~-----p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|....|.|+|||+||.|||+.|...| |+++|||||+|..+. ++++++||++||++||+||++|+.||+|+
T Consensus 69 ~~f~~~~~~V~RRYsdF~~Lh~~L~~~~~~~~~p~~~iP~lP~K~~~~---~~~~~~fie~Rr~~Le~fL~~l~~~p~l~ 145 (162)
T 1ocs_A 69 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS---NRFSNEVIEERRQGLNTWMQSVAGHPLLQ 145 (162)
T ss_dssp TTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSS---CTTSHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCCcceeEEEeeHHHHHHHHHHHHHHhccccCCCccCCCCCCCcccc---cCCCHHHHHHHHHHHHHHHHHHHcCHHhh
Confidence 5788899999999999999999999998 999999999999862 57899999999999999999999999999
Q ss_pred C-Chhhhcccccccc
Q psy18202 76 V-NSHAIIFLTAKLA 89 (357)
Q Consensus 76 ~-~~~~~~FL~~~~~ 89 (357)
. ++.|+.||+.++|
T Consensus 146 ~~s~~l~~FL~~~~~ 160 (162)
T 1ocs_A 146 SGSKVLVRFIEAEKF 160 (162)
T ss_dssp HHCHHHHHHHHCSSC
T ss_pred hCCHHHHHhCCCccc
Confidence 8 8999999999865
|
| >2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-23 Score=167.34 Aligned_cols=87 Identities=32% Similarity=0.539 Sum_probs=78.2
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC--CCCCCCCCCccccchh------hhcCCHHHHHHHHHHHHHHHHHHHcCc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP--SHIIPPLPEKHSLLEH------LNRYSKEFILCRMKLLDQFLRRVTSHP 72 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p--~~~iPplP~K~~~~~~------~~~~~~~fie~R~~~L~~fL~~i~~hp 72 (357)
|.|...+|.|.||||||.|||+.|...|| |++|||||+|..+... .++++++||++|+++||.||++|+.||
T Consensus 33 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP~K~~~~~~~~~~~~~~~~~~~~ie~Rr~~Le~fL~~l~~~p 112 (128)
T 2i4k_A 33 PLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHP 112 (128)
T ss_dssp SSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSSSCCSSSSSSCCCCSCCCSSTTHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCCCCcccchhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHcCc
Confidence 57888999999999999999999999996 6899999999986211 124689999999999999999999999
Q ss_pred cccCChhhhcccccc
Q psy18202 73 VLSVNSHAIIFLTAK 87 (357)
Q Consensus 73 ~L~~~~~~~~FL~~~ 87 (357)
.|++|+.|+.||+.+
T Consensus 113 ~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 113 TMLQDPDVREFLEKE 127 (128)
T ss_dssp HHHCSHHHHTTTTCC
T ss_pred ccccChHHHHhhCCC
Confidence 999999999999976
|
| >2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-23 Score=171.69 Aligned_cols=88 Identities=33% Similarity=0.580 Sum_probs=79.4
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchh-----hhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEH-----LNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~-----~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|...+|.|.||||||.|||+.|... |+++|||||+|..+..+ .++++++||++||++||.||++|+.||.|+
T Consensus 40 ~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP~K~~~~~~~~~~~~g~~~~~fie~Rr~~Le~fL~~l~~~p~l~ 118 (146)
T 2csk_A 40 PIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLPGKALKRQLPFRGDEGIFEESFIEERRQGLEQFINKIAGHPLAQ 118 (146)
T ss_dssp SSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCSCCCCCCSSTTCCCSSCCCHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred CCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCCCCchhhccccccccCCCCHHHHHHHHHHHHHHHHHHHcChhhc
Confidence 568889999999999999999999875 89999999999986211 157899999999999999999999999999
Q ss_pred CChhhhcccccccc
Q psy18202 76 VNSHAIIFLTAKLA 89 (357)
Q Consensus 76 ~~~~~~~FL~~~~~ 89 (357)
.++.|+.||+.+++
T Consensus 119 ~s~~l~~FL~~~~~ 132 (146)
T 2csk_A 119 NERCLHMFLQEEAI 132 (146)
T ss_dssp HCHHHHHHTTCSSC
T ss_pred cCcHHHhhcCCCch
Confidence 99999999999864
|
| >3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-22 Score=160.15 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=74.6
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcccc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFLT 85 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL~ 85 (357)
+.|.|+||||||.|||+.|...||++++||||+|..+ + ++++||++||++||.||++|+.||.|++|+.|+.||+
T Consensus 32 ~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP~K~~~----~-~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~~~~FL~ 106 (115)
T 3lui_A 32 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLF----S-LTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLR 106 (115)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCCCCCSS----C-CCHHHHHHHHHHHHHHHHHHHHSHHHHHCHHHHHHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCCCCccc----C-CCHHHHHHHHHHHHHHHHHHHcChhhhcChHHHHHHC
Confidence 4689999999999999999999999999999999986 3 7899999999999999999999999999999999999
Q ss_pred cccc
Q psy18202 86 AKLA 89 (357)
Q Consensus 86 ~~~~ 89 (357)
.+..
T Consensus 107 ~~~~ 110 (115)
T 3lui_A 107 RAQQ 110 (115)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 8753
|
| >3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-21 Score=153.84 Aligned_cols=82 Identities=27% Similarity=0.298 Sum_probs=75.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.|||+.|...||. .+||||+|..+ ++++++||++||++|+.||++|+.||.|+.|+.|+.||
T Consensus 47 ~~~~~V~RRYSdF~~L~~~L~~~~~~-~~p~lP~K~~~----g~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~FL 121 (130)
T 3p0c_A 47 SHEWTVKHRYSDFHDLHEKLVAERKI-DKNLLPPKKII----GKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFL 121 (130)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHTTSS-CTTSCCCCCCC----SCCCSCSHHHHHHHHHHHHHHHHHTSCSEECHHHHHHH
T ss_pred CeEEEEEehHHHHHHHHHHHHHHcCC-CCCCCCCcccc----ccCCHHHHHHHHHHHHHHHHHHHcChhhhcCHHHHHHh
Confidence 46799999999999999999999974 57999999987 67899999999999999999999999999999999999
Q ss_pred cccccch
Q psy18202 85 TAKLAEF 91 (357)
Q Consensus 85 ~~~~~~~ 91 (357)
+.+++++
T Consensus 122 ~~~~~~~ 128 (130)
T 3p0c_A 122 HFHFYEI 128 (130)
T ss_dssp HSCTTC-
T ss_pred CCCcccc
Confidence 9987653
|
| >1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=8.1e-21 Score=150.13 Aligned_cols=83 Identities=24% Similarity=0.283 Sum_probs=73.3
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCC-CCCCccccch---hhhcCCHHHHHHHHHHHHHHHHHHHcCccc---cCCh
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIP-PLPEKHSLLE---HLNRYSKEFILCRMKLLDQFLRRVTSHPVL---SVNS 78 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iP-plP~K~~~~~---~~~~~~~~fie~R~~~L~~fL~~i~~hp~L---~~~~ 78 (357)
.+|.|.||||||.|||+.|...|| +++| |||+|..+.+ ..++++++||++||++||.||++|+.||.+ +.|+
T Consensus 27 ~~~~V~RRYsdF~~L~~~L~~~~~-~~~P~~lP~K~~~~~~~~~~~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~~~~s~ 105 (117)
T 1kmd_A 27 PNKRLYKRYSEFWKLKTRLERDVG-STIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTK 105 (117)
T ss_dssp SSCCEEECHHHHHHHHHHHHHHHC-SCCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSH
T ss_pred ceEEEEechHHHHHHHHHHHHHcC-ccCCCCCCCCCEecccccccCCCCHHHHHHHHHHHHHHHHHHHhCcchhhhhcCH
Confidence 378999999999999999999998 7899 9999998510 015689999999999999999999999976 7899
Q ss_pred hhhcccccccc
Q psy18202 79 HAIIFLTAKLA 89 (357)
Q Consensus 79 ~~~~FL~~~~~ 89 (357)
.|+.||+.+++
T Consensus 106 ~l~~FL~~~~~ 116 (117)
T 1kmd_A 106 IAQDFLQLSKP 116 (117)
T ss_dssp HHHHHTTCCCC
T ss_pred HHHHhcCCCCC
Confidence 99999998753
|
| >1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-20 Score=152.90 Aligned_cols=79 Identities=27% Similarity=0.443 Sum_probs=73.4
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhh-cCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLN-RYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~-~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
...|.|.|||+||.|||+.|...||++++ |||+|..+ + +++++||++||.+|+.||++|+.||.|+.++.|+.|
T Consensus 36 ~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~-plP~K~~~----g~~~~~~~ie~Rr~~Le~yL~~l~~~p~l~~s~~l~~F 110 (154)
T 1xte_A 36 RSEWFVFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIF----GDNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAF 110 (154)
T ss_dssp TEEEEEEEEHHHHHHHHHHHHHHCGGGCC-CCCCSCCS----SCTTCHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHH
T ss_pred CEEEEEEeeHHHHHHHHHHHHHHCCCCcc-cCCCcccc----CCCCCHHHHHHHHHHHHHHHHHHHcChhhccChHHHHH
Confidence 35799999999999999999999999865 59999987 5 789999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 84 LTAKL 88 (357)
Q Consensus 84 L~~~~ 88 (357)
|+.++
T Consensus 111 L~~~~ 115 (154)
T 1xte_A 111 LQMDS 115 (154)
T ss_dssp TTTTC
T ss_pred hCCCC
Confidence 99875
|
| >1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-19 Score=147.66 Aligned_cols=83 Identities=24% Similarity=0.426 Sum_probs=75.3
Q ss_pred CCcceeecchhhHHHHHHHHHHhCC--------CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLP--------SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p--------~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
...|.|.|||+||.|||..|...|| +++|||||+|..+ ++ +++|+++|+.+|+.||+.|+.||. ++
T Consensus 49 ~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP~K~~~----~~-~~~~ie~Rr~~Le~yL~~ll~~p~~l~ 123 (143)
T 1h6h_A 49 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV----GV-KQEIAEMRIPALNAYMKSLLSLPVWVL 123 (143)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS----SC-HHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCCCCccc----Cc-CHHHHHHHHHHHHHHHHHHHcCCHhhh
Confidence 4689999999999999999999999 4689999999987 44 789999999999999999999997 99
Q ss_pred CChhhhccccccccchh
Q psy18202 76 VNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 76 ~~~~~~~FL~~~~~~~~ 92 (357)
+|+.|..||+..+.++.
T Consensus 124 ~s~~~~~Fl~~~~~d~~ 140 (143)
T 1h6h_A 124 MDEDVRIFFYQSPYDSE 140 (143)
T ss_dssp TCHHHHHHHSCCHHHHT
T ss_pred cCHHHHHHhCCCccccc
Confidence 99999999998865543
|
| >2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-19 Score=145.34 Aligned_cols=73 Identities=23% Similarity=0.278 Sum_probs=67.8
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-ccCChhhh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LSVNSHAI 81 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~~~~~~~ 81 (357)
...|.|.||||||.|||+.|...||++.+||+|+|..+ ++++++||++||.+|+.||++|+.||. |++++.+.
T Consensus 34 ~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP~K~~~----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~l~~sp~~l 107 (134)
T 2v14_A 34 DETWTVFRRYSRFREMHKTLKLKYAELAALEFPPKKLF----GNKDERVIAERRSHLEKYLRDFFSVMLQSATSPLHI 107 (134)
T ss_dssp TEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCCCCCSS----CTTSHHHHHHHHHHHHHHHHHHHHHHHHCTTSTTCT
T ss_pred CeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCcCCccc----cCCCHHHHHHHHHHHHHHHHHHHhChHhhcCCHHHH
Confidence 46799999999999999999999999999999999987 678999999999999999999999997 88898543
|
| >2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.1e-19 Score=142.69 Aligned_cols=75 Identities=19% Similarity=0.314 Sum_probs=69.0
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIFL 84 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~FL 84 (357)
...|.|.||||||.|||+.|...|| +||||+|.. ++++++||++||.+||.||++|+.||.+. ++.|..||
T Consensus 43 ~~~~~V~RRYSdF~~Lh~~L~~~~~---iP~lP~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~p~~~-s~~l~~FL 113 (128)
T 2ett_A 43 GRRHTVPRRYSEFHALHKRIKKLYK---VPDFPSKRL-----PNWRTRGLEQRRQGLEAYIQGILYLNQEV-PKELLEFL 113 (128)
T ss_dssp TEEEEEEEEHHHHHHHHHHHHTTSS---CCCCCCSSC-----CCSSSSCHHHHHHHHHHHHHHHHHHSSSS-CHHHHHHH
T ss_pred CcEEEEECCHHHHHHHHHHHHHHCC---CCCCCCCcc-----CCCCHHHHHHHHHHHHHHHHHHHhCchhc-CHHHHHhc
Confidence 4579999999999999999999987 899999985 36789999999999999999999999887 79999999
Q ss_pred cccc
Q psy18202 85 TAKL 88 (357)
Q Consensus 85 ~~~~ 88 (357)
+.+.
T Consensus 114 ~~~~ 117 (128)
T 2ett_A 114 RLRH 117 (128)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 9884
|
| >2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-19 Score=139.72 Aligned_cols=78 Identities=23% Similarity=0.357 Sum_probs=72.3
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHcC-ccccCChhhhcc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTSH-PVLSVNSHAIIF 83 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~h-p~L~~~~~~~~F 83 (357)
+.|.|.|||+||.|||..|...||+..+||||+|..+ +++ +.+|+++|+.+|+.||+.|+++ |.+++|+.+..|
T Consensus 36 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~----g~~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~F 111 (121)
T 2ar5_A 36 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL----GRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTF 111 (121)
T ss_dssp SCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCCCCCCS----SSSSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHH
T ss_pred eeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCeec----CccCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHH
Confidence 5899999999999999999999999999999999987 443 5789999999999999999986 799999999999
Q ss_pred cccc
Q psy18202 84 LTAK 87 (357)
Q Consensus 84 L~~~ 87 (357)
+++.
T Consensus 112 f~~~ 115 (121)
T 2ar5_A 112 FHGS 115 (121)
T ss_dssp TSSS
T ss_pred cCCc
Confidence 9886
|
| >4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.1e-18 Score=136.36 Aligned_cols=76 Identities=24% Similarity=0.383 Sum_probs=67.1
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
.+..|.|.||||||.|||+.|...+| +||+|+|.. ++++++||++||.+|+.||++|+.||.+. ++.|..|
T Consensus 51 ~~~~w~V~RRYsdF~~L~~~L~~~~~---~p~lP~K~~-----~~~~~~~ie~Rr~~Le~yL~~ll~~~~~~-~~~l~~F 121 (129)
T 4az9_A 51 NGRKHFVEKRYSEFHALHKKLKKCIK---TPEIPSKHV-----RNWVPKVLEQRRQGLETYLQAVILENEEL-PKLFLDF 121 (129)
T ss_dssp TTEEEEEEEEHHHHHHHHHHHTTTSC---CCCCCCSCC-----SCCCHHHHHHHHHHHHHHHHHHHHHCSSC-CHHHHHH
T ss_pred CCEEEEEEeeHHHHHHHHHHHHHhCC---CCCCCcccc-----cCCCHHHHHHHHHHHHHHHHHHHhCchhh-CHHHHHH
Confidence 35679999999999999999999887 688998875 46899999999999999999999999975 7899999
Q ss_pred ccccc
Q psy18202 84 LTAKL 88 (357)
Q Consensus 84 L~~~~ 88 (357)
|+.+.
T Consensus 122 L~~~~ 126 (129)
T 4az9_A 122 LNVRH 126 (129)
T ss_dssp TTC--
T ss_pred CCCCC
Confidence 99873
|
| >1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-17 Score=136.14 Aligned_cols=82 Identities=24% Similarity=0.397 Sum_probs=73.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCC---------CCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSH---------IIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHP-VL 74 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~---------~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp-~L 74 (357)
+..|.|.|||+||.+||..|...||.. +||+||+|..+ + +.+|+++|+.+|+.||+.|+++| .+
T Consensus 35 ~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP~lP~K~~~----~--~~~~~e~Rr~~Le~YL~~Ll~~p~~i 108 (141)
T 1kq6_A 35 LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWF----D--GQRAAENRQGTLTEYCSTLMSLPTKI 108 (141)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCC----C--SHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred CCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccCCCCCcccc----C--CHHHHHHHHHHHHHHHHHHHhCCHhh
Confidence 457999999999999999999999965 89999999987 3 37999999999999999999987 59
Q ss_pred cCChhhhccccccccchh
Q psy18202 75 SVNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 75 ~~~~~~~~FL~~~~~~~~ 92 (357)
++|+.|..||+....++.
T Consensus 109 ~~s~~v~~Fl~~~~~d~~ 126 (141)
T 1kq6_A 109 SRCPHLLDFFKVRPDDLK 126 (141)
T ss_dssp HTCHHHHHHHSCCHHHHS
T ss_pred cCChHHHHHhCCCccccC
Confidence 999999999998865554
|
| >2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-18 Score=140.00 Aligned_cols=82 Identities=23% Similarity=0.341 Sum_probs=67.7
Q ss_pred CcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcC-CHHHHHHHHHHHHHHHHHHHc-CccccCChhhhcc
Q psy18202 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRY-SKEFILCRMKLLDQFLRRVTS-HPVLSVNSHAIIF 83 (357)
Q Consensus 6 ~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~-~~~fie~R~~~L~~fL~~i~~-hp~L~~~~~~~~F 83 (357)
..|.|.|||+||.|||..|...||+..+||||+|..+ +++ +.+|+++|+.+|+.||+.|++ +|.+.+|+.|..|
T Consensus 51 ~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP~K~~~----~~~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~F 126 (140)
T 2iwl_X 51 EPSFVFRTFDEFQELHNKLSIIFPLWKLPGFPNRMVL----GRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTF 126 (140)
T ss_dssp SCEEEEECHHHHHHHHHHHHHHSCGGGSCCCCC--------------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHH
T ss_pred eeEEEEeEHHHHHHHHHHHHHHCcCccCCCCCCCeec----CccchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHH
Confidence 4689999999999999999999999999999999987 443 567999999999999999998 6899999999999
Q ss_pred ccccccch
Q psy18202 84 LTAKLAEF 91 (357)
Q Consensus 84 L~~~~~~~ 91 (357)
|+....+.
T Consensus 127 l~~~~~D~ 134 (140)
T 2iwl_X 127 FHPLLRDE 134 (140)
T ss_dssp HSCCTTTC
T ss_pred hCCCCCCc
Confidence 99875443
|
| >2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.3e-16 Score=127.95 Aligned_cols=83 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS 70 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~ 70 (357)
.+.|.|.|||+||.+||..|...||. ++||+||+|..+ + +.+|+++|+.+|+.||+.|+.
T Consensus 44 ~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP~K~~~----~--~~~~~e~Rr~~Le~YL~~Ll~ 117 (156)
T 2v6v_A 44 GKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIPGPVPY----V--TNSITKKRKEDLNIYVADLVN 117 (156)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCCCCCSS----C--CHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCCCCccc----C--CHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999999999983 789999999875 2 578999999999999999998
Q ss_pred -CccccCChhhhccccccccchhh
Q psy18202 71 -HPVLSVNSHAIIFLTAKLAEFSM 93 (357)
Q Consensus 71 -hp~L~~~~~~~~FL~~~~~~~~~ 93 (357)
+|.++.|+.|..||+..+.++..
T Consensus 118 lp~~i~~s~~v~~Ff~~~~~D~~~ 141 (156)
T 2v6v_A 118 LPDYISRSEMVHSLFVVLNNGFDR 141 (156)
T ss_dssp SCHHHHTSHHHHHTTSCCSSSSCE
T ss_pred CCccccCCHHHHHHhCCCCccccc
Confidence 55799999999999988655543
|
| >2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-13 Score=118.01 Aligned_cols=193 Identities=13% Similarity=0.114 Sum_probs=150.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..|++|+.....+..++..+..+.+.+.......+.+......||.++..+.....+-...+..++..++ ..+.+
T Consensus 48 ~T~D~~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~d- 123 (251)
T 2fic_A 48 ETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYEPDWPGRDEANKIAENND---LLWMD- 123 (251)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSTTHHHHHHHHHHHH---HHHHH-
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCchhHHHHHHHHH---HHHHH-
Confidence 34599999999999999999999999999999999999999999999998875433322334444554444 22233
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
+.+.+...+.+||..|..++..++.++..|+.++.+|+.+...+.+.+....+
T Consensus 124 ~~~~l~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--------------------------- 176 (251)
T 2fic_A 124 YHQKLVDQALLTMDTYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKK--------------------------- 176 (251)
T ss_dssp HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcC---------------------------
Confidence 33345568999999999999999999999999999998876666544332211
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
-+.+|..++.+++.++.+|+.+++.+..||++|...+...+...|..|+..|+.||.++.++|.
T Consensus 177 ---------d~~kl~kae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~ 240 (251)
T 2fic_A 177 ---------DEAKIAKAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQ 240 (251)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234556777788899999999999999999999999999999999999999999999999995
|
| >1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-12 Score=115.92 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=154.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 123 HHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 123 e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
..|++|++....++.++..+..+.+.+.......+.+......||.++..+...+......+..+++. +..++.+ +
T Consensus 34 t~D~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~-~ 109 (244)
T 1uru_A 34 TADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGA---SESLWAD-F 109 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHH---HHHHHHH-H
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCchHHHHHHHH---HHHHHHH-H
Confidence 34899999999999999999999999999888888888888899999988866554333444444443 3334344 4
Q ss_pred hhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCC
Q psy18202 203 IEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKS 282 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (357)
.+.+...+.+||..|..++..++.++..|+.++.+|+.+...+.+.+...++ +
T Consensus 110 ~~~~~~~vi~Pl~~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~k--------~------------------- 162 (244)
T 1uru_A 110 AHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--------R------------------- 162 (244)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--------T-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccc--------C-------------------
Confidence 4455578999999999999999999999999999998877766554321100 0
Q ss_pred ccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 283 TSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 283 ~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
+-+.+|..++.+++.++..|+.++..+..||++|...+...+...|..|+..|..||.++.++|+-
T Consensus 163 -------kd~~kl~~ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~ 228 (244)
T 1uru_A 163 -------KDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSE 228 (244)
T ss_dssp -------TBCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012234456677888999999999999999999999999999999999999999999999999963
|
| >2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-15 Score=120.98 Aligned_cols=84 Identities=24% Similarity=0.436 Sum_probs=73.6
Q ss_pred CCcceeecchhhHHHHHHHHHHhCC---------CCCCCCCCCccccchhhhc-CCHHHHHHHHHHHHHHHHHHHcCc-c
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLP---------SHIIPPLPEKHSLLEHLNR-YSKEFILCRMKLLDQFLRRVTSHP-V 73 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p---------~~~iPplP~K~~~~~~~~~-~~~~fie~R~~~L~~fL~~i~~hp-~ 73 (357)
.+.|.|.|||+||..||..|...|| .++||+||+|..+ ++ .+.+++++|+..|+.||+.|++.| .
T Consensus 38 ~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~lP~k~~~----~~~~~~~~~e~R~~~Le~YL~~Ll~lp~~ 113 (149)
T 2l73_A 38 GSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPKLLDAPLL----GRVGRTSRGLARLQLLETYSRRLLATAER 113 (149)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCCCCCCSCC----SSCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred CCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccCCCCCeee----ccccchHHHHHHHHHHHHHHHHHHhCCcc
Confidence 5679999999999999999999999 3689999999987 22 357899999999999999999866 4
Q ss_pred ccCChhhhccccccccchh
Q psy18202 74 LSVNSHAIIFLTAKLAEFS 92 (357)
Q Consensus 74 L~~~~~~~~FL~~~~~~~~ 92 (357)
+.+|+.|..||....+++.
T Consensus 114 i~~s~~v~~Ff~~~~~D~~ 132 (149)
T 2l73_A 114 VARSPTITGFFAPQPLDLE 132 (149)
T ss_dssp HHHSHHHHHHHSCCGGGGS
T ss_pred ccCCHHHHHHhCCCccccC
Confidence 9999999999998876554
|
| >2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.2e-13 Score=104.15 Aligned_cols=76 Identities=14% Similarity=0.339 Sum_probs=66.1
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHc-CccccCChhhhcc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTS-HPVLSVNSHAIIF 83 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~-hp~L~~~~~~~~F 83 (357)
++.+.|.|||++|..||+.|...||...+|++|+|..+ +. ...-++ |+++|+.||+.|++ .|.+.+|+.|..|
T Consensus 50 ~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP~K~ll----~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~F 123 (127)
T 2wwe_A 50 NETSLTEKSFEQFSKLHSQLQKQFASLTLPEFPHWWHL----PF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSF 123 (127)
T ss_dssp SCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCCCTTSH----HH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHH
T ss_pred CCeEEEEEEHHHHHHHHHHHHHhCccccCCCCCCcccc----Cc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHH
Confidence 56789999999999999999999999999999999965 11 122244 99999999999998 7999999999999
Q ss_pred ccc
Q psy18202 84 LTA 86 (357)
Q Consensus 84 L~~ 86 (357)
|..
T Consensus 124 f~~ 126 (127)
T 2wwe_A 124 FLS 126 (127)
T ss_dssp HHC
T ss_pred hCC
Confidence 864
|
| >2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-12 Score=117.43 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=70.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcc-cc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPV-LS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~-L~ 75 (357)
.+.|.|.|||+||..||..|...||. ++||+||+|..+ ++ ..+|+++|+..|+.||++++.+|. +.
T Consensus 52 ~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP~k~~~----~~-~~~~~e~R~~~Le~yl~~ll~lp~~i~ 126 (341)
T 2dyb_A 52 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLPAKVYV----GV-KQEIAEMRIPALNAYMKSLLSLPVWVL 126 (341)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCCCCCCC----SC-HHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCCCcccc----Cc-cHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 46799999999999999999999993 579999999987 33 577999999999999999999887 99
Q ss_pred CChhhhccccccc
Q psy18202 76 VNSHAIIFLTAKL 88 (357)
Q Consensus 76 ~~~~~~~FL~~~~ 88 (357)
.++.+..|+....
T Consensus 127 ~~~~v~~Ff~~~~ 139 (341)
T 2dyb_A 127 MDEDVRIFFYQSP 139 (341)
T ss_dssp TCHHHHHHHSCCH
T ss_pred hhHHHHHHHhhcc
Confidence 9999999998764
|
| >4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-09 Score=93.40 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=149.8
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
....|+.|++....+..++..++.+.+.+.....+.+.|......++..+..+.....+-...+..+.... ..++.+
T Consensus 28 e~T~D~~Fe~~e~rF~~le~~~~kL~k~~k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~~~~~~~~~~~~~---~~l~~~ 104 (237)
T 4avm_A 28 VETKDERFEQSASNFYQQQAEGHKLYKDLKNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNN---DLLWED 104 (237)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHH---HHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHH---HHHHHH
Confidence 56689999999999999999999998888888888888888888889988887654322122233333222 233343
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
....+...+..|+..|..++..++.++..|+.++.+|+.+...+. +|... +
T Consensus 105 -~~~~l~~~vi~Pl~~~~~~~~~i~k~I~KR~~kllDyd~~~~~~~-------kl~~k----~----------------- 155 (237)
T 4avm_A 105 -YEEKLADQAVRTMEIYVAQFSEIKERIAKRGRKLVDYDSARHHLE-------AVQNA----K----------------- 155 (237)
T ss_dssp -HHHHHCCCCCHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHTC----S-----------------
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhc----c-----------------
Confidence 333445578999999999999999999999999999977665554 34322 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..+. .++..++.+.+.++..|+.++..++.|++.|..-+..-+...|..|+..|..||..+..+|.
T Consensus 156 -~kd~-------~kl~kae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~~i~~q~~f~~~~~~~~~ 221 (237)
T 4avm_A 156 -KKDE-------AKTAKAEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQNISNLRDVFYREMSKLNH 221 (237)
T ss_dssp -SCCH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0122 34555667788888999999999999999999999999999999999999999999998885
|
| >1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-06 Score=77.81 Aligned_cols=182 Identities=10% Similarity=0.106 Sum_probs=131.1
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------Hhh-----HHHHHHHHHHHHHHHHhhC---C
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLY-----------------KER-----KDYVSEAHQFAIVLNTWAG---Y 176 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~-----------------k~~-----~~l~~~~~~~~~~~~~l~~---~ 176 (357)
.+.|+.|.+....++.+...+.++.+.+.... +.+ ..+-.+...||.++...|. .
T Consensus 27 Tel~~d~~~lE~r~d~~k~~~~kl~k~~~~yl~~np~~r~~~~~~~~i~k~~g~~k~~~~p~~~~~L~~~m~~~~~~l~~ 106 (256)
T 1zww_A 27 TKLDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGD 106 (256)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSTTTC---------------------CCHHHHHHHHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHhhCCC
Confidence 44688999998888888888877776665322 100 0000011134444433332 2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 177 EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQL 255 (357)
Q Consensus 177 E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL 255 (357)
+..++.++..+|.+...++..... +...+...|.+||..++. ++..+....+.++.+..+|+.+...+
T Consensus 107 ~s~~g~aL~~~g~a~~~la~~~~~-~~~~i~~~~l~pl~~~l~~~~k~i~k~rkkl~~~rLdyD~~k~k~---------- 175 (256)
T 1zww_A 107 DCNFGPALGEVGEAMRELSEVKDS-LDMEVKQNFIDPLQNLHDKDLREIQHHLKKLEGRRLDFGYKKKRQ---------- 175 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTT----------
T ss_pred CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 334899999999999999988766 555566789999999865 88999999999988888887643221
Q ss_pred hccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 256 TNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKIL 335 (357)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l 335 (357)
.. .++++++.++.+|+..++.+..+|..|-.. ..++-..|
T Consensus 176 ~k---------------------------------------~~eeEle~A~~~fe~~~e~~~~~m~~l~~~-e~e~~~~L 215 (256)
T 1zww_A 176 GK---------------------------------------IPDEELRQALEKFDESKEIAESSMFNLLEM-DIEQVSQL 215 (256)
T ss_dssp TT---------------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred cc---------------------------------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHHHHHH
Confidence 10 025668888999999999999999999754 46777899
Q ss_pred HHHHHHHHHHHHHHHhccc
Q psy18202 336 LKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 336 ~~~a~~qi~~~~~~~~~W~ 354 (357)
..|+..|+.||+++.++++
T Consensus 216 ~~~v~aQl~y~~~~~e~L~ 234 (256)
T 1zww_A 216 SALVQAQLEYHKQAVQILQ 234 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.1e-06 Score=72.02 Aligned_cols=178 Identities=10% Similarity=0.099 Sum_probs=127.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHh----h-------------------------HHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKE----R-------------------------KDYVSEAHQFAIVLNT 172 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~----~-------------------------~~l~~~~~~~~~~~~~ 172 (357)
.+.+++|.++...++.+......+.+.+.....- + ..|+..+.+.|..|.
T Consensus 11 Tel~~d~~~lE~r~d~~~~~~~~l~k~~~~yl~pn~~~r~~~~~~~~i~k~~~~~k~~~~~~~~~~L~~~m~~~~~~l~- 89 (240)
T 2z0v_A 11 TKLDDEFLDMERKIDVTNKVVAEILSKTTEYLQPNPAYRAKLGMLNTVSKIRGQVKTTGYPQTEGLLGDCMLKYGKELG- 89 (240)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHTCCCCCCSSCCCCCCSSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHhhcC-
Confidence 3467889888888888888777777666544220 1 113334444443332
Q ss_pred hhCCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 173 WAGYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAE 251 (357)
Q Consensus 173 l~~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~ 251 (357)
.+..++.+|..+|.+..+++..... +.......|.+||..++ .++..+....+.++....+|+.+...+
T Consensus 90 ---~ds~~g~aL~~~g~a~~~ia~~~~~-~~~~v~~~~l~pL~~~l~~d~k~i~~~rKkle~~rLd~D~ak~k~------ 159 (240)
T 2z0v_A 90 ---EDSTFGNALIEVGESMKLMAEVKDS-LDINVKQTFIDPLQLLQDKDLKEIGHHLKKLEGRRLDYDYKKKRV------ 159 (240)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTT------
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------
Confidence 2344999999999999999988766 55566679999999987 788888888877777777776541111
Q ss_pred HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 252 KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDL 331 (357)
Q Consensus 252 ~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l 331 (357)
. + ..+.+++.++.+|+..++.+..++..+... ..++
T Consensus 160 ----~------------------------------k---------~~eeEl~~A~~~fe~~~e~~~~~m~~~~~~-~~e~ 195 (240)
T 2z0v_A 160 ----G------------------------------K---------IPDEEVRQAVEKFEESKELAERSMFNFLEN-DVEQ 195 (240)
T ss_dssp ----T------------------------------S---------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHS-THHH
T ss_pred ----c------------------------------c---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cHHH
Confidence 0 0 125667888889999999999999999855 4677
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q psy18202 332 KKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 332 ~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
-+.|..|++.|+.||+++.++++
T Consensus 196 l~~l~~~v~aQl~y~~~~~e~L~ 218 (240)
T 2z0v_A 196 VSQLAVFIEAALDYHRQSTEILQ 218 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999988764
|
| >2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A | Back alignment and structure |
|---|
Probab=98.55 E-value=5.1e-05 Score=67.91 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=131.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----C--chhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----Y--EPQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~--E~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.+...++++.+.+..++.....++.+...|+..+..++. . +..+..+|..++..+..+...... +
T Consensus 25 ~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~~~~~~-l 103 (265)
T 2q12_A 25 VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-L 103 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4566677777888888888888888888888888889999888764 1 222778899999999998877665 6
Q ss_pred hhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..++ ..+..+++.=+.=++...+|+.+ ......+... +
T Consensus 104 ~~~~~~~~~~PL~~f~~~dlk~~ke~kk~fdk~~~~yd~a-------l~k~~~~~k~---k------------------- 154 (265)
T 2q12_A 104 STQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAA-------INRYSRLSKK---R------------------- 154 (265)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHTS---C-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhcCCCC---C-------------------
Confidence 6666678899998877 55666666555555555555433 2222222221 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+ . +..+.+.+.++..++..|....-.....+...+..+..++-+.|..|+..|..|+++..+.|.
T Consensus 155 -~-~------e~~l~Ea~~~l~~~Rk~f~~~~ldyv~~l~~l~~kk~~e~le~l~~~~~a~~~ff~~g~e~~~ 219 (265)
T 2q12_A 155 -E-N------DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (265)
T ss_dssp -C-C------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -c-c------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 112345566667777777777766666777777788889999999999999999999988873
|
| >2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00022 Score=67.29 Aligned_cols=187 Identities=17% Similarity=0.254 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-----C-c-hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-----Y-E-PQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-----~-E-~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.++..++++.+.+..+....++++.+...|+..+..++. . . ..+..+|..+++.+..+...... +
T Consensus 25 ~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~~~~~d~~v~~~l~~f~~~~~ei~~~~~~-l 103 (385)
T 2q13_A 25 VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAV-L 103 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCC---CCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4556667777777777777778887777888888888888888664 1 1 22667899999999999777655 6
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+..||..++. .+..+++.-+. ++.+...++........+... +
T Consensus 104 ~~~~~~~~~~PL~~f~~~di~~~ke~kk~-------fek~~~~yd~al~k~~~~~k~---k------------------- 154 (385)
T 2q13_A 104 STQLADAMMFPITQFKERDLKEILTLKEV-------FQIASNDHDAAINRYSRLSKK---R------------------- 154 (385)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTCCSS---S-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhcCCCC---C-------------------
Confidence 66666678888887763 34555544333 333333333333322222211 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
..++ ...+++.++..++..|....-.....|...+..+..++-+.|..|...++.|+++..+.|.
T Consensus 155 --~~e~------~~~ea~~~l~~~rk~f~~~~ldy~~~l~~l~~rk~~e~le~l~~~~~a~~~ff~~g~~~~~ 219 (385)
T 2q13_A 155 --ENDK------VKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSENLN 219 (385)
T ss_dssp --CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred --chhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111 1234455666677777777766666688888888899999999999999999999999984
|
| >1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=0.001 Score=57.15 Aligned_cols=195 Identities=12% Similarity=0.131 Sum_probs=133.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..|.+++.--+.+.........+.+.++++..+-..++.....||..|..+|.-++.++..+..+|+....++..-.
T Consensus 3 rtvD~EL~~klE~l~~~q~~Y~~L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~~p~l~~~f~~~~~~~r~~~k~g~-- 80 (224)
T 1i4d_A 3 RTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGE-- 80 (224)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHH--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHhHH--
Confidence 457888888878888888888999999999999999999999999999999998888888888888887766654321
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVK-QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k-~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
.+..+|..+...+.-+. .++..-..-+..|+.+.-+....+...+.+.....+
T Consensus 81 -------~Ll~~L~~f~s~l~T~~~kaI~DT~lTIk~ye~aR~EY~ay~~~~ee~~~~~~~------------------- 134 (224)
T 1i4d_A 81 -------TLLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD------------------- 134 (224)
T ss_dssp -------HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred -------HHHHHHHHHHHHHHHHHhHhccHHHHHHHHHHHHhHhHHHHHhhHHHhhccccc-------------------
Confidence 23333333333333322 111111112223444444444444444444322000
Q ss_pred CCccH-HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q psy18202 281 KSTSE-DRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRG 353 (357)
Q Consensus 281 ~~~~~-~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W 353 (357)
.++ .| ++.+...+..++.+|+.+...+..=|+-....|..+|...|.-|...-..|+.++.+.-
T Consensus 135 --~~~l~r-------ve~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~~~~l 199 (224)
T 1i4d_A 135 --AGTRGR-------LESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQL 199 (224)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccchhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 001 12 23467778889999999999999999999999999999999999999999998877654
|
| >4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.016 Score=54.87 Aligned_cols=187 Identities=14% Similarity=0.216 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-----c--hhHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 130 QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-----E--PQLSSVIRQVSKAVDTTASLHKNLL 202 (357)
Q Consensus 130 ~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-----E--~~l~~~l~~~~~~~~~~~~~~~~~~ 202 (357)
.+...++.++..++++.+.+.++......+..+...|+..+..++.. . ..+...+..++..+..+...... +
T Consensus 48 ~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~a~~~f~~~l~~~~~~~~~~~~~d~~~~~~l~~f~~~~~ei~~~~~~-L 126 (407)
T 4h8s_A 48 VFEEDAGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQNFALGKGDEEVISTLHYFSKVVDELNLLHTE-L 126 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC----CHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 34555666666677777777777777777777777777777555322 1 22667788888888888776555 5
Q ss_pred hhhhhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 203 IEPFHEHNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 203 ~~~~~~~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
.......+.+||..+.. .+..+++.-+. ++.+.+.+.........+... +
T Consensus 127 ~~~~~~~i~~pL~~f~k~di~~~ke~kK~-------Fek~~~~Yd~~l~Ky~~~~k~---k------------------- 177 (407)
T 4h8s_A 127 AKQLADTMVLPIIQFREKDLTEVSTLKDL-------FGLASNEHDLSMAKYSRLPKK---K------------------- 177 (407)
T ss_dssp HHHHHHHTHHHHHHHHHTHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCST---T-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcccc---C-------------------
Confidence 55566678888877653 34444443333 333333333333333332211 1
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
+..... .+...++..+...+....-.....|...+..+..++-+.|..|...+..+++...+.|.
T Consensus 178 -~~~~~~-------~e~~~~l~~~Rk~f~~asldyv~~l~~lq~rk~~e~le~l~~~~~a~~~~f~~~~~~~~ 242 (407)
T 4h8s_A 178 -ENEKVK-------TEVGKEVAAARRKQHLSSLQYYCALNALQYRKQMAMMEPMIGFAHGQINFFKKGAEMFS 242 (407)
T ss_dssp -CCHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred -CchHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 12233344455556555555556677777888889999999999999999999888774
|
| >2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.061 Score=47.26 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC------chhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY------EPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~------E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
+++..+.+..+...+.+..+..+.+......|..+|..++.. -.+|+.+|.++++....+..-... ....+..
T Consensus 24 m~~~~P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~-~~~~~~~ 102 (253)
T 2ykt_A 24 MEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEE-MLKSFHN 102 (253)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 444555566666556566555566655555666666555431 244888888888877777655554 4444545
Q ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 209 HNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 209 ~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.|..||..-+..-. |.+-........+|..+...|.|+..+..++...
T Consensus 103 ~li~pL~~kie~d~--K~v~~~~K~~~~e~k~~~~~l~K~~~e~~kl~KK 150 (253)
T 2ykt_A 103 ELLTQLEQKVELDS--RYLSAALKKYQTEQRSKGDALDKCQAELKKLRKK 150 (253)
T ss_dssp TTHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHhh
Confidence 67777776554322 2222333345667788888999998888777765
|
| >3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.13 Score=44.10 Aligned_cols=143 Identities=15% Similarity=0.221 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH
Q psy18202 142 ISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY 220 (357)
Q Consensus 142 l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 220 (357)
|..|.+.-+.++......+.+....+..+..||..+.+ |+....++|..+..+++.... ++..++ ..-..|+.....
T Consensus 25 L~~LIk~EK~vi~s~e~~are~~~~A~~Ls~WG~~edddl~DIsdklgvLl~e~ge~e~~-~a~~~d-~yR~~LK~IR~~ 102 (234)
T 3plt_A 25 LSQLVKTEKGVLRAMEVVASERREAAKQLSLWGADNDDDVSDVTDKLGVLIYELGELQDQ-FIDKYD-QYRVTLKSIRNI 102 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHH
Confidence 44444444555556666677777788899999988755 888888888888777776433 332221 222222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHH
Q psy18202 221 IDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTS 300 (357)
Q Consensus 221 ~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~ 300 (357)
=.++...-.+|..+.. ++.+|.... |...|+..|+.++..+|.
T Consensus 103 E~svqp~R~~R~~l~~--------------~I~kLk~k~-----------------------P~s~kl~~LeqELvraEa 145 (234)
T 3plt_A 103 EASVQPSRDRKEKITD--------------EIAHLKYKD-----------------------PQSTKIPVLEQELVRAEA 145 (234)
T ss_dssp HHHHHHHHHHHHHHHH--------------HHHHHHHHC-----------------------TTCTHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH--------------HHHHHhccC-----------------------CCCchHHHHHHHHHHHHH
Confidence 2222222222322222 223333221 112477888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 301 QLEICDEKLQTANNHLRSDLERW 323 (357)
Q Consensus 301 ~~~~~~~~~~~i~~~~~~El~rF 323 (357)
+.-.++..+..++....+|--..
T Consensus 146 e~lvaEAqL~n~kR~~lKEa~~~ 168 (234)
T 3plt_A 146 ESLVAEAQLSNITREKLKAAYSY 168 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHhHHHHHHHHHHH
Confidence 66666666666665544444333
|
| >2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.16 Score=44.48 Aligned_cols=193 Identities=13% Similarity=0.168 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC-------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcch
Q psy18202 140 EKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG-------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSH 212 (357)
Q Consensus 140 ~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~-------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 212 (357)
..+..+.....+..+..+.+..+...|..+|..++. .-.+|+.+|.+++.....+..-.+. ....+...|..
T Consensus 31 P~~e~lv~~g~ky~~al~~~~~a~~af~Da~qKvad~A~~s~g~s~elG~~L~~i~~~hr~ie~~l~~-~~k~~~~eli~ 109 (253)
T 2d1l_A 31 PVWEDFINKAGKLQSQLRTTVVAAAAFLDAFQKVADMATNTRGGTREIGSALTRMCMRHRSIEAKLRQ-FSSALIDCLIN 109 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCcchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 333334333434444444444444444444444432 1234777887777776666544444 44445556666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHH
Q psy18202 213 PMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLS 292 (357)
Q Consensus 213 ~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~ 292 (357)
||..-+..-.-.-..+.++ ...+|..+..++.|+.....++.... .+.++ +| + .+. -..+.
T Consensus 110 pLe~k~e~d~k~~~~~~K~--~~~~~k~~r~elkk~~~~~~k~qkK~-rk~~~-------~g-k------~~~--~~~l~ 170 (253)
T 2d1l_A 110 PLQEQMEEWKKVANQLDKD--HAKEYKKARQEIKKKSSDTLKLQKKA-KKVDA-------QG-R------GDI--QPQLD 170 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHS-SCGGG-------TT-T------TSH--HHHHH
T ss_pred HHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHHh-ccccc-------cC-C------Ccc--hHHHH
Confidence 6665555443333333332 44556677778888888777766441 11100 00 0 011 11233
Q ss_pred hhHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHhcccccC
Q psy18202 293 TAIPKLTSQLEICDEK-LQTANNHLRSDLERWRLEKKNDLKKILLKIADQQI------AYYQQRSDRGNCNC 357 (357)
Q Consensus 293 ~~i~~le~~~~~~~~~-~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi------~~~~~~~~~W~~~~ 357 (357)
..+.++......++.- -+.+...+.+|-.||- .|-+.+..++..++ .+++..++-|...|
T Consensus 171 ~a~q~v~~~~~~le~~~~~~~r~AL~EERrRyc-----flv~~l~pv~~~e~~~~~e~~~l~~~l~~~~~~~ 237 (253)
T 2d1l_A 171 SALQDVNDKYLLLEETEKQAVRKALIEERGRFC-----TFISMLRPVIEEEISMLGEITHLQTISEDLKSLT 237 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHGGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3333333222211111 1224455667877774 34444455555544 57788888886443
|
| >3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.3 Score=47.21 Aligned_cols=165 Identities=12% Similarity=0.161 Sum_probs=83.5
Q ss_pred HhhHHHHHHHHHHHHHHHH-hh-CCch-hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH---------
Q psy18202 154 KERKDYVSEAHQFAIVLNT-WA-GYEP-QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI--------- 221 (357)
Q Consensus 154 k~~~~l~~~~~~~~~~~~~-l~-~~E~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------- 221 (357)
....+++..+..++..+.. +. ..+. .+..++..+-..++.++..+.. +++.+...+.++|..+....
T Consensus 50 ~iE~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~e~~~K~~~~~~ 128 (486)
T 3haj_A 50 RIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQKEAFHKQMMGGF 128 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHCCBCSSSSB
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Confidence 3344566666666665432 22 2333 2677777777777777766655 55555555666666655432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 222 DAVKQVLARRDVIQAEHDMCGEELQKKTAE--------------KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 222 ~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~--------------~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
..-|++...=.+++..++.....+.+.+.. ..+.... .+ .....
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d---~~-------------------~t~k~ 186 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKAD---PS-------------------LNPEQ 186 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-------------------SCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---cc-------------------CCHHH
Confidence 111222222222222333333333333332 2221111 00 01244
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTAN--------------NHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~--------------~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
+++++.++.....+++.++.+|.... ..+...++.++.+|..-|+.+|..|+..
T Consensus 187 ~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~~lK~~L~~y~~~ 254 (486)
T 3haj_A 187 LKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLRFFREVLLEVQKH 254 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556555555555555543332 2344567777888888888888888765
|
| >4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.46 Score=44.75 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHh--
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAV-KQVLARRDVIQAEHDMCG-EELQKKTAEKEQL-- 255 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~~R~~~~~~~~~~~-~~l~kk~~~~~kL-- 255 (357)
++.++..+-...+.++..+.. +++.+...+..+|..+....... |.....-.+++..+.... ..+.+.+....+.
T Consensus 70 l~~aW~~ll~ete~~a~~H~~-lae~L~~~v~~~l~~~~ke~~~~rK~~~~~~~klqk~~~k~~~~~lekaKk~Y~~~ck 148 (406)
T 4dyl_A 70 ISQSWAEITSQTEGLSRLLRQ-HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALAR 148 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777776655 55555555666666555544332 222222333344444444 4454444432221
Q ss_pred -----hccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH---------------H
Q psy18202 256 -----TNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANN---------------H 315 (357)
Q Consensus 256 -----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~---------------~ 315 (357)
..... +. .....+++++.+.......+..++.+|..... .
T Consensus 149 e~e~A~~k~~-~~-------------------~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N~~~~~yy~~~lp~ 208 (406)
T 4dyl_A 149 DSAQAKRKYQ-EA-------------------SKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPG 208 (406)
T ss_dssp HHHHHHHCC-----------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHh-hc-------------------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 11100 00 00022344444454555445555544432211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 316 LRSDLERWRLEKKNDLKKILLKIADQQ 342 (357)
Q Consensus 316 ~~~El~rF~~~k~~~l~~~l~~~a~~q 342 (357)
+...++.++..|..-|+.+|..|+...
T Consensus 209 ~~d~lQ~lEe~Ri~~lk~~L~~~~~~~ 235 (406)
T 4dyl_A 209 LLRSLQDLHEEMACILKEILQEYLEIS 235 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234456677788888888888887754
|
| >2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.34 Score=42.79 Aligned_cols=199 Identities=9% Similarity=0.080 Sum_probs=92.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchh-HHHHHHHHHHHHHHHHHHHHHHhh
Q psy18202 125 HSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQ-LSSVIRQVSKAVDTTASLHKNLLI 203 (357)
Q Consensus 125 d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~ 203 (357)
+.-|..+..+++.=...++.+......=+....+++..+..++..+.. ..+.+ +..++..+-...+.++..+.. ++
T Consensus 17 ~~g~~~l~~~~~~g~~~~~el~~f~~eRa~iE~eYak~L~kLa~~~~~--~~~~gs~~~~w~~~~~~~e~~a~~h~~-~a 93 (276)
T 2v0o_A 17 NSGFDVLYHNMKHGQISTKELADFVRERATIEEAYSRSMTKLAKSASN--YSQLGTFAPVWDVFKTSTEKLANCHLD-LV 93 (276)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--SCCCSSSGGGHHHHHHHHHHHHHHHHH-HH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 334555544444444444444444433334445566666666666532 22322 444455555555555555443 44
Q ss_pred hhhhhhcchhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-------HHHhhccCCCCCCCCCCCccc
Q psy18202 204 EPFHEHNSHPMKDYLMYIDAVKQVLAR----RDVIQAEHDMCGEELQKKTAE-------KEQLTNKDSDSSSPTSSTATS 272 (357)
Q Consensus 204 ~~~~~~l~~~l~~~~~~~~a~k~~l~~----R~~~~~~~~~~~~~l~kk~~~-------~~kL~~~~~~~~~~~~~~~~~ 272 (357)
+.+. .+.++|..+.......+.-+.. -.+++..++.+...+.|.+.. .+++... +.+
T Consensus 94 ~~l~-~~~~~l~~~~~~~~~~rK~~~~~~~~~~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~--~~s--------- 161 (276)
T 2v0o_A 94 RKLQ-ELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKE--GAT--------- 161 (276)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCC---------
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC---------
Confidence 4442 4455665555444332211110 012333444444444444432 2222211 000
Q ss_pred CCCcccccCCcc--HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 273 STNSYSLWKSTS--EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAY 345 (357)
Q Consensus 273 ~~~g~~~~~~~~--~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~ 345 (357)
+ +..+ ..|+.+++.+....-.....+..+++.--..+...++.+...|..-|+.+|..|+...-..
T Consensus 162 ---~----k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ~le~~R~~~lk~~l~~~~~~~~~~ 229 (276)
T 2v0o_A 162 ---Q----REIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSNAIKEI 229 (276)
T ss_dssp ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0000 1334444444333333444444444333344556778888999999999999999765543
|
| >2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.37 Score=43.17 Aligned_cols=144 Identities=8% Similarity=0.040 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHH-HHHHHHHHHHHHHH--------------HHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDA-VKQVLARRDVIQAE--------------HDMCGEE 244 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a-~k~~l~~R~~~~~~--------------~~~~~~~ 244 (357)
+..++..+-..++.++..+.. +++.+...+.++|..+...... -|.+...-.+++.. |....+.
T Consensus 74 ~~~aw~~~~~~~e~~a~~h~~-~a~~l~~~v~~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~~~e 152 (305)
T 2efl_A 74 SCKAFISNLNEMNDYAGQHEV-ISENMASQIIVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKE 152 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666554 5555555666666666555442 22222222233333 3344444
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHH-----------
Q psy18202 245 LQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTAN----------- 313 (357)
Q Consensus 245 l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~----------- 313 (357)
+++++...++.... + + ..+.++++++.+.......++.++.+|....
T Consensus 153 ~e~a~~~~~~~~~~-----~-----------~------~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~ 210 (305)
T 2efl_A 153 ADRAQQYFEKMDAD-----I-----------N------VTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYY 210 (305)
T ss_dssp HHHHHHHHHHHHHC-----T-----------T------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-----c-----------c------ccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333333211 0 0 1123455555555555444444444433221
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 314 ----NHLRSDLERWRLEKKNDLKKILLKIADQQIAYY 346 (357)
Q Consensus 314 ----~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~ 346 (357)
-.+...++.+...+..-|+.+|..|+.......
T Consensus 211 ~~~~~~~~~~lQ~le~~r~~~lk~~l~~~~~~~~~~~ 247 (305)
T 2efl_A 211 HTHIPNIFQKIQEMEERRIVRMGESMKTYAEVDRQVI 247 (305)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 223356778888999999999999998765443
|
| >3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A | Back alignment and structure |
|---|
Probab=96.51 E-value=0.45 Score=42.95 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHh--hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW--AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l--~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... +..|.+ +..++..+-..++.++..+.. +++.+...+.++|..+..
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~ 124 (312)
T 3abh_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQK 124 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666666655431 233433 777777777777777777665 666665566677765544
|
| >3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.5 Score=43.42 Aligned_cols=62 Identities=11% Similarity=0.187 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHh--hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW--AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l--~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... +..|.+ +..++..+-..++.++..+.. +++.+...+..+|..+..
T Consensus 60 ~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~-la~~L~~~v~~~l~~~~~ 124 (350)
T 3aco_A 60 KAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLE-VKASLMNDDFEKIKNWQK 124 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45666666666655432 123333 777777777777777777665 665565566666665543
|
| >2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.49 Score=42.32 Aligned_cols=168 Identities=10% Similarity=0.063 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHhh------CCchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHH-HHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTWA------GYEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAV-KQVLA 229 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l~------~~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~-k~~l~ 229 (357)
.+++..+..++..+.... ..+..+..++..+-...+.++..+.. +++.+...+.++|..+....... |....
T Consensus 38 ~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~-~a~~L~~~v~~~l~~~~~~~~~~rK~~~~ 116 (301)
T 2efk_A 38 QAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQREL-VAENLSVRVCLELTKYSQEMKQERKMHFQ 116 (301)
T ss_dssp HHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543210 01223566666666667777766555 55555556667776665554443 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------HHHhhccCCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhH
Q psy18202 230 RRDVIQAEHDMCGEELQKKTAE--------------KEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAI 295 (357)
Q Consensus 230 ~R~~~~~~~~~~~~~l~kk~~~--------------~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i 295 (357)
.-.++..++..+...+.+.+.. ..+.... + + ..+..+++++.++
T Consensus 117 ~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~-----~-----------~------~s~~~~eK~~~k~ 174 (301)
T 2efk_A 117 EGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQD-----I-----------N------ATKADVEKAKQQA 174 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----T-----------T------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-----c-----------c------cCHHHHHHHHHHH
Confidence 3333344444444444444332 2222111 0 0 1123445555555
Q ss_pred hHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 296 PKLTSQLEICDEKLQTA---------------NNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQ 347 (357)
Q Consensus 296 ~~le~~~~~~~~~~~~i---------------~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~ 347 (357)
......++.+..+|... -..+...++.+...+..-|+.+|..|+........
T Consensus 175 ~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~~lk~~l~~~~~~~~~~~~ 241 (301)
T 2efk_A 175 HLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVP 241 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555555454443221 11234566777788888999999999987665543
|
| >3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.68 Score=41.23 Aligned_cols=184 Identities=11% Similarity=0.116 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHH-h-hCCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH--------HHHH
Q psy18202 157 KDYVSEAHQFAIVLNT-W-AGYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI--------DAVK 225 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~-l-~~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--------~a~k 225 (357)
.+++..+..++..+.. + ...+.+ +..++..+-..++.++..+.. ++..+...+.++|..+.... ..-|
T Consensus 39 ~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~a~~h~~-~a~~l~~~v~~~l~~~~~e~~~k~~~~~kerK 117 (290)
T 3i2w_A 39 KGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMK-IKDNLCNDVNSQIKTWQKENYHHTLMQIKERK 117 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHHHHCCEETTEEHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 4455555555554432 2 123333 677777777777777777665 66666567778887776543 2224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCCCCCCcccCCCcccccCC----c-cHHHHHHHHhhHhHHH
Q psy18202 226 QVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDS-DSSSPTSSTATSSTNSYSLWKS----T-SEDRLEKLSTAIPKLT 299 (357)
Q Consensus 226 ~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~-~~~~~~~~~~~~~~~g~~~~~~----~-~~~ki~~l~~~i~~le 299 (357)
.+...=.+++..+......+.+.+...+++-.... -+..-..........+.-+.+. . -..++.+.+.+....-
T Consensus 118 ~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~~~v 197 (290)
T 3i2w_A 118 DLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAI 197 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555666677777777776554332200 0000000000000000000000 0 0144555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 300 SQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQ 341 (357)
Q Consensus 300 ~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~ 341 (357)
........+++.--..+...++.+...|..-|+.+|..|+..
T Consensus 198 ~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~~lk~~l~~~~~~ 239 (290)
T 3i2w_A 198 AEITKYNSVYIEDMTSVFEKCQTFEKTRLQFFKEILFNVHSC 239 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554455566788888999999999999999865
|
| >2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.93 Score=41.30 Aligned_cols=62 Identities=15% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHh-h-CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHH
Q psy18202 157 KDYVSEAHQFAIVLNTW-A-GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLM 219 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l-~-~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 219 (357)
.+++..+..++..+... + ..+.+ +..++..+-..++.++..+.. +++.+...+.++|..+..
T Consensus 51 ~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~e~~a~~H~~-~a~~L~~~v~~~l~~~~~ 115 (337)
T 2x3v_A 51 KAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQE-VKNSLLNEDLEKVKNWQK 115 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44555555555544332 1 22333 666777777777777766655 555555556666666544
|
| >3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.34 E-value=1.1 Score=38.03 Aligned_cols=189 Identities=13% Similarity=0.141 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
++++.+.+..+........+.-+.+..+...|-.++..+|. .-.+|+.+|-++++....+..-++. ....+..
T Consensus 22 meqfnP~l~nlv~lg~~Y~kAl~a~~~A~~~y~dA~~Kige~A~~S~~skeLG~vL~qis~~hR~i~~~le~-~~k~f~~ 100 (222)
T 3ok8_A 22 MEQFNPALENLVYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEILVQMSDTQRHLNSDLEV-VVQTFHG 100 (222)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 45555555555555555444444444444444444444432 2234888888888887777665544 3333444
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
.+..||..-+. +..-+.+. +.....+|....+.|.|...++.|+...+. + ...|
T Consensus 101 elI~pLE~k~e~D~k~i~~~---~K~y~~e~k~~~~~leK~~~elkK~~rksq-k---------------------~~~k 155 (222)
T 3ok8_A 101 DLLQHMEKNTKLDMQFIKDS---CQHYEIEYRHRAANLEKCMSELWRMERKRD-K---------------------NARE 155 (222)
T ss_dssp HTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-T---------------------THHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHHHHHHHHHHHHHHHhhhhhc-c---------------------ChHH
Confidence 55555554444 23333333 344666778888889999988888765421 1 1122
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERW--RLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF--~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
....|.....+++....+ ...+.+.+|=.|| --+|.-.+..-+..|-..-....+..+..|.
T Consensus 156 ---~~e~v~~~q~el~~f~~~--s~r~Al~EErRRYcFL~ekhc~~~~~~~~~h~k~~~~L~~kl~~W~ 219 (222)
T 3ok8_A 156 ---MKESVNRLHAQMQAFVSE--SKRAAELEEKRRYRFLAEKHLLLSNTFLQFLGRARGMLQNRVLLWK 219 (222)
T ss_dssp ---HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ---HHHHHHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhh
Confidence 122222222222222222 2334556777775 4566666666677776666777777888885
|
| >3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A | Back alignment and structure |
|---|
Probab=94.35 E-value=2.9 Score=37.82 Aligned_cols=176 Identities=13% Similarity=0.098 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHh-h-CCchh-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHH------HHHH--
Q psy18202 157 KDYVSEAHQFAIVLNTW-A-GYEPQ-LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYI------DAVK-- 225 (357)
Q Consensus 157 ~~l~~~~~~~~~~~~~l-~-~~E~~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~------~a~k-- 225 (357)
.+++..+..++..+... + ..+.+ +..++..+-...+.++..+.. +++.+...+..+|..+.... ..+|
T Consensus 51 ~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~-~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ke~ 129 (320)
T 3m3w_A 51 KAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLE-VREKLHGPDSERVRTWQRGAFHRPVLGGFRAS 129 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTHHHHHHHHHHHHHTC-----CCHHH
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555556666544221 1 23433 777888887778888877666 66666666777777665322 1112
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhcc--CCCCCCCCCCCcccCCCcccccCCcc-----HHHHHHH
Q psy18202 226 -QVLARRDVIQAEHDMCGEELQKKTAEKEQ------LTNK--DSDSSSPTSSTATSSTNSYSLWKSTS-----EDRLEKL 291 (357)
Q Consensus 226 -~~l~~R~~~~~~~~~~~~~l~kk~~~~~k------L~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~ki~~l 291 (357)
.+...=.+++..+....+.+.+.+...++ .... ...++.+ ...+.-+-+... ...+.+.
T Consensus 130 K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~-------~~s~ke~~K~~~k~~k~~~~~~~a 202 (320)
T 3m3w_A 130 RAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADS-------SMSQEQLRKLQERVGRCTKEAEKM 202 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSC-------CC---CCSSSSSTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22111122333444444444444443221 1100 0000000 000111111110 1445555
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 292 STAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIAD 340 (357)
Q Consensus 292 ~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~ 340 (357)
+.+....-........+|..--..+...++.++..|..-|+++|..|+.
T Consensus 203 ~~~Y~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~~~ 251 (320)
T 3m3w_A 203 KTQYEQTLAELNRYTPRYMEDMEQAFESCQAAERQRLLFFKDVLLTLHQ 251 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555565665444556678888999999999999999986
|
| >3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.77 E-value=3.5 Score=36.67 Aligned_cols=122 Identities=11% Similarity=0.172 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKD 259 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~ 259 (357)
+..++..+-..++.++..... ++..+...+..+|+.|..--...++ ...++.+++...+.| +.....
T Consensus 120 l~~~W~~v~~e~e~~a~~H~~-la~~L~~ev~~pL~~~~e~~~~~~e----~~~l~~~L~~~ak~l-------e~~~kk- 186 (287)
T 3g9g_A 120 LRNVWDTVIEELKSDLKSSTE-YYNTLDQQVVRELKESVENNTSWRE----SKDLHSKLSKNAASI-------EHYSKN- 186 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHCSSSSCHHHHH----HHHHHHHHHHHHHHH-------HHCSSC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHccHHHHH----HHHHHHHHHHHHHHH-------HHHHhh-
Confidence 667777777777777777665 6666666677777776532112222 122233333333333 222111
Q ss_pred CCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 260 SDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIA 339 (357)
Q Consensus 260 ~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a 339 (357)
. +....++.+...++.=...+-+-++.++++|..-|+++|..|+
T Consensus 187 ----~--------------------------------~a~~~le~a~~qWes~aP~~fe~fQ~lEEeRL~~Lkd~L~~y~ 230 (287)
T 3g9g_A 187 ----N--------------------------------ENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQ 230 (287)
T ss_dssp ----C--------------------------------SCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----H--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0011245555666655566677788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy18202 340 DQQIAYYQQRS 350 (357)
Q Consensus 340 ~~qi~~~~~~~ 350 (357)
...-.++.+..
T Consensus 231 ~~~sd~~~~~~ 241 (287)
T 3g9g_A 231 TSFSDYLLNTT 241 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 98888877644
|
| >3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.17 E-value=11 Score=26.21 Aligned_cols=37 Identities=30% Similarity=0.280 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 220 YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 220 ~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.+.||-+-|++|-+ -.+..++..|+.-+...+.|..|
T Consensus 4 llSAVeDKLRrrl~--E~~~q~qaEl~sLrrT~~EL~~G 40 (78)
T 3iv1_A 4 LISAVSDKLRWRMK--EEMDRAQAELNALKRTEEDLKKG 40 (78)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHhh
Confidence 45677787877733 34455556666666666666654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 357 | ||||
| d1ocsa_ | 132 | d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast | 7e-16 | |
| d1kmda_ | 117 | d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces | 1e-14 | |
| d1kq6a_ | 140 | d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo | 3e-12 | |
| d1xtea_ | 116 | d.189.1.1 (A:) Serine/threonine-protein kinase Sgk | 5e-12 | |
| d1h6ha_ | 143 | d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo | 4e-08 | |
| d1urua_ | 217 | a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila | 4e-07 |
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 71.3 bits (174), Expect = 7e-16
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 1 PEFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL--NRYSKEFILCRM 58
P F VRRRY+DF + L++ + P + H + L NR+S E I R
Sbjct: 40 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLSNRFSNEVIEERR 99
Query: 59 KLLDQFLRRVTSHPVLSVNSHA-IIFLTAK 87
+ L+ +++ V HP+L S + F+ A+
Sbjct: 100 QGLNTWMQSVAGHPLLQSGSKVLVRFIEAE 129
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.7 bits (165), Expect = 1e-14
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHL---NRYSKEFILCRMKLLD 62
+ +RY++F L +L + S I PEK +L+ E I R L+
Sbjct: 27 PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLE 86
Query: 63 QFLRRVTSHPVLSVNSHAIIFLT 85
+FL + + S I
Sbjct: 87 RFLNELYNDRFDSRWRDTKIAQD 109
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.3 bits (148), Expect = 3e-12
Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 4/98 (4%)
Query: 6 TECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKH---SLLEHLNRYSKEFILCRMKLLD 62
+E +V RR+ + H L E P PE L + R L
Sbjct: 35 SEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLT 94
Query: 63 QFLRRVTSHPVLSVNSHAII-FLTAKLAEFSMHKKHSP 99
++ + S P ++ F + + + +
Sbjct: 95 EYCSTLMSLPTKISRCPHLLDFFKVRPDDLKLPTDNQT 132
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.1 bits (145), Expect = 5e-12
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 2 EFPDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLL 61
+E V RRY +F L+N L + P+ + ++ + + +FI R L
Sbjct: 30 SVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRI----FGDNFDPDFIKQRRAGL 85
Query: 62 DQFLRRVTSHPVLSVNSHAIIFL 84
++F++ + +P L + FL
Sbjct: 86 NEFIQNLVRYPELYNHPDVRAFL 108
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (117), Expect = 4e-08
Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 14/92 (15%)
Query: 5 DTECIVRRRYNDFVWLHNKLVETLPSH--------IIPPLPEKHSLLEHLNRYSKEFILC 56
++ ++ RRY F L +KL E +P LP K +E
Sbjct: 49 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAK-----VYVGVKQEIAEM 103
Query: 57 RMKLLDQFLRRVTS-HPVLSVNSHAIIFLTAK 87
R+ L+ +++ + S + ++ IF
Sbjct: 104 RIPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 135
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 48.2 bits (114), Expect = 4e-07
Identities = 21/222 (9%), Positives = 57/222 (25%), Gaps = 38/222 (17%)
Query: 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQ 186
F+ + + +K + + + + + + ++
Sbjct: 13 IFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQA 72
Query: 187 VSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQ 246
+ A ++ + + L + P+ Y +K+ + +R+ ++D Q
Sbjct: 73 QTGASESLWADFAHKLGDQVLI----PLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQ 128
Query: 247 KKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICD 306
A + K + K QLE
Sbjct: 129 NLQANANK----------------------------------RKDDVKLTKGREQLEEAR 154
Query: 307 EKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348
+ N L +L + L L + + ++ +
Sbjct: 155 RTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNE 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 357 | |||
| d1ocsa_ | 132 | Sorting nexin grd19 {Baker's yeast (Saccharomyces | 99.83 | |
| d1kmda_ | 117 | Vam7p {Baker's yeast (Saccharomyces cerevisiae) [T | 99.78 | |
| d1xtea_ | 116 | Serine/threonine-protein kinase Sgk3, Cisk {Mouse | 99.76 | |
| d1kq6a_ | 140 | p47phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.66 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 99.64 | |
| d1h6ha_ | 143 | p40phox NADPH oxidase {Human (Homo sapiens) [TaxId | 99.64 | |
| d1urua_ | 217 | Amphiphysin {Fruit fly (Drosophila melanogaster) [ | 99.63 | |
| d1y2oa1 | 248 | BAP2/IRSp53 N-terminal domain {Human (Homo sapiens | 98.62 | |
| d2d4ca1 | 237 | Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d2elba1 | 268 | DCC-interacting protein 13-alpha, APPL1 {Human (Ho | 98.41 | |
| d2efla1 | 288 | Formin-binding protein 1, FNBP1 {Human (Homo sapie | 97.04 | |
| d2efka1 | 279 | CDC42-interacting protein 4, CIP4 {Human (Homo sap | 96.68 | |
| d2efla1 | 288 | Formin-binding protein 1, FNBP1 {Human (Homo sapie | 93.02 | |
| d1i4da_ | 200 | Arfaptin, Rac-binding fragment {Human (Homo sapien | 87.66 | |
| d1y2oa1 | 248 | BAP2/IRSp53 N-terminal domain {Human (Homo sapiens | 81.43 | |
| d2efka1 | 279 | CDC42-interacting protein 4, CIP4 {Human (Homo sap | 81.1 |
| >d1ocsa_ d.189.1.1 (A:) Sorting nexin grd19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Sorting nexin grd19 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.7e-21 Score=155.61 Aligned_cols=85 Identities=33% Similarity=0.584 Sum_probs=75.7
Q ss_pred CCCCCCcceeecchhhHHHHHHHHHHhCC-----CCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCcccc
Q psy18202 1 PEFPDTECIVRRRYNDFVWLHNKLVETLP-----SHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLS 75 (357)
Q Consensus 1 p~f~~~~~~V~RRysdF~~L~~~L~~~~p-----~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~ 75 (357)
|.|....|.|+||||||.|||+.|...|| ++.+||+|++..+. ++++++|+++||++||.||++|+.||.|+
T Consensus 40 ~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~p~~p~~~~~~---~~~~~~~ie~Rr~~Le~fL~~l~~~p~l~ 116 (132)
T d1ocsa_ 40 PSFHKRVSKVRRRYSDFEFFRKCLIKEISMLNHPKVMVPHLPGKILLS---NRFSNEVIEERRQGLNTWMQSVAGHPLLQ 116 (132)
T ss_dssp TTCSCSEEEEEEEHHHHHHHHHHHHHHHHHTTCTTCCCCCCTTCCCSS---CTTSHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCCCceEEEEeeHHHHHHHHHHHHHhcccccCcccccCCCccccccc---ccCCHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 67889999999999999999999998655 66788999888763 56799999999999999999999999998
Q ss_pred C-Chhhhccccccc
Q psy18202 76 V-NSHAIIFLTAKL 88 (357)
Q Consensus 76 ~-~~~~~~FL~~~~ 88 (357)
. ++.|+.||+.++
T Consensus 117 ~~s~~l~~FLe~~~ 130 (132)
T d1ocsa_ 117 SGSKVLVRFIEAEK 130 (132)
T ss_dssp HHCHHHHHHHHCSS
T ss_pred hCCHHHHhcCCccc
Confidence 6 688999999875
|
| >d1kmda_ d.189.1.1 (A:) Vam7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Vam7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=5.5e-20 Score=143.12 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch---hhhcCCHHHHHHHHHHHHHHHHHHHcCcc---ccCCh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE---HLNRYSKEFILCRMKLLDQFLRRVTSHPV---LSVNS 78 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~---~~~~~~~~fie~R~~~L~~fL~~i~~hp~---L~~~~ 78 (357)
.+.+.|+||||||.|||+.|...||+.++||+|+|..+.. ..++++++|+++|+++|+.||+.|++||. +++|+
T Consensus 26 ~~~~~V~RRYsdF~~L~~~L~~~~~~~~~p~lP~K~~~~~~~~~~~~~~~~~ie~R~~~Le~yL~~ll~~p~~~~~~~s~ 105 (117)
T d1kmda_ 26 TPNKRLYKRYSEFWKLKTRLERDVGSTIPYDFPEKPGVLDRRWQRRYDDPEMIDERRIGLERFLNELYNDRFDSRWRDTK 105 (117)
T ss_dssp CSSCCEEECHHHHHHHHHHHHHHHCSCCCCCCCCCCCSSCSTTCCCTTCHHHHHHHHTTHHHHHHHHHCCSSCCHHHHSH
T ss_pred ECCEEEEehHHHHHHHHHHHHHHCCCCcCCCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHcCcchhhhcCCH
Confidence 3578899999999999999999999999999999987521 12567999999999999999999999996 67899
Q ss_pred hhhccccccc
Q psy18202 79 HAIIFLTAKL 88 (357)
Q Consensus 79 ~~~~FL~~~~ 88 (357)
.|+.||+.+.
T Consensus 106 ~l~~FL~~s~ 115 (117)
T d1kmda_ 106 IAQDFLQLSK 115 (117)
T ss_dssp HHHHHTTCCC
T ss_pred HHHHHhCCCC
Confidence 9999998764
|
| >d1xtea_ d.189.1.1 (A:) Serine/threonine-protein kinase Sgk3, Cisk {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: Serine/threonine-protein kinase Sgk3, Cisk species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=3.4e-19 Score=138.80 Aligned_cols=81 Identities=23% Similarity=0.333 Sum_probs=74.9
Q ss_pred CCCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcCccccCChhhhcc
Q psy18202 4 PDTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSHPVLSVNSHAIIF 83 (357)
Q Consensus 4 ~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~hp~L~~~~~~~~F 83 (357)
....|.|.||||||.+||+.|...||+..+||+|++... +.++++++++|+.+|+.||++|+.||.+++++.|+.|
T Consensus 32 ~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~p~~~~~~~~----~~~~~~~l~~Rr~~L~~yL~~l~~~~~l~~~~~~~~F 107 (116)
T d1xtea_ 32 GRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFG----DNFDPDFIKQRRAGLNEFIQNLVRYPELYNHPDVRAF 107 (116)
T ss_dssp TTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCCCSCCSS----CTTCHHHHHHHHHHHHHHHHHHTTCHHHHTSHHHHHH
T ss_pred CCcEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCCccccc----CccCHHHHHHHHHHHHHHHHHHHhCHhhhcChHHHhh
Confidence 457899999999999999999999999999988887765 5678999999999999999999999999999999999
Q ss_pred ccccc
Q psy18202 84 LTAKL 88 (357)
Q Consensus 84 L~~~~ 88 (357)
|+.++
T Consensus 108 L~~d~ 112 (116)
T d1xtea_ 108 LQMDS 112 (116)
T ss_dssp TTTTC
T ss_pred cCCCC
Confidence 98875
|
| >d1kq6a_ d.189.1.1 (A:) p47phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p47phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=4.9e-17 Score=130.71 Aligned_cols=88 Identities=19% Similarity=0.224 Sum_probs=75.1
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCCCCCCCCCCccccch---hhhcCCHHHHHHHHHHHHHHHHHHHcCc-cccCChhh
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPSHIIPPLPEKHSLLE---HLNRYSKEFILCRMKLLDQFLRRVTSHP-VLSVNSHA 80 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~~~iPplP~K~~~~~---~~~~~~~~fie~R~~~L~~fL~~i~~hp-~L~~~~~~ 80 (357)
+.+|.|+|||+||.|||+.|...||+..+|++|+|..... ..+..+.++++.|+.+|+.||+.|+.+| .+++|+.|
T Consensus 34 ~~~~~V~RRYsdF~~Lh~~L~~~fp~~~~~~~p~k~~~~~~~~~~~~~~~~~ie~R~~~Le~yL~~Ll~~p~~l~~s~~v 113 (140)
T d1kq6a_ 34 LSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIPHLPAPKWFDGQRAAENRQGTLTEYCSTLMSLPTKISRCPHL 113 (140)
T ss_dssp CCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSCCCCCCCCCCSHHHHHHHHHHHHHHHHHHTTSCHHHHTCHHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHCCcccCCCCchhhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCChhhhCCHHH
Confidence 4679999999999999999999999999999998865421 1244578999999999999999999876 59999999
Q ss_pred hccccccccchh
Q psy18202 81 IIFLTAKLAEFS 92 (357)
Q Consensus 81 ~~FL~~~~~~~~ 92 (357)
..||+..+.++.
T Consensus 114 ~~Fl~~~~~d~~ 125 (140)
T d1kq6a_ 114 LDFFKVRPDDLK 125 (140)
T ss_dssp HHHHSCCHHHHS
T ss_pred HHHhCCCccccC
Confidence 999998754443
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8e-14 Score=118.09 Aligned_cols=198 Identities=11% Similarity=0.103 Sum_probs=165.8
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 122 RHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKNL 201 (357)
Q Consensus 122 ~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~~ 201 (357)
+..|++|+.....+..++..+..+.+.+..+.....+++.....||..|..++..++.++..+..+|..+..+......
T Consensus 2 kT~D~e~e~~~~~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~- 80 (200)
T d1i4da_ 2 RTVDLELELQIELLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGET- 80 (200)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHH-
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH-
Confidence 3579999999999999999999999999999999999999999999999999988888888999999998888776554
Q ss_pred hhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccC
Q psy18202 202 LIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWK 281 (357)
Q Consensus 202 ~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~ 281 (357)
+.......+.+++..+..++..+++++++|+.+..+|+.+...+.+.+.....
T Consensus 81 ~~~~~~~~~~~l~~~~~~~~~~~~~~~kk~~~~~~dyd~~~~k~~~~~~~~~~--------------------------- 133 (200)
T d1i4da_ 81 LLGAVNFFVSSINTLVTKTMEDTLMTVKQYEAARLEYDAYRTDLEELSLGPRD--------------------------- 133 (200)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcccc---------------------------
Confidence 44455567888999999999999999999999999988876666443222110
Q ss_pred CccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q psy18202 282 STSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGN 354 (357)
Q Consensus 282 ~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~ 354 (357)
.+-..++.+++.+++.++..|+.++..+..+|++|+..|..+|...|..|+..+..||+.+.+.|+
T Consensus 134 -------~~~~~kl~~ae~~~~~a~~~fe~~~~~~~~~l~~l~~~r~~~~~~~l~~~~~~~~~f~~~~~~~le 199 (200)
T d1i4da_ 134 -------AGTRGRLESAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGNQKQLE 199 (200)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011235667788889999999999999999999999999999999999999999999999999885
|
| >d1h6ha_ d.189.1.1 (A:) p40phox NADPH oxidase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: PX domain superfamily: PX domain family: PX domain domain: p40phox NADPH oxidase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=8.3e-17 Score=129.76 Aligned_cols=80 Identities=23% Similarity=0.373 Sum_probs=70.2
Q ss_pred CCcceeecchhhHHHHHHHHHHhCCC--------CCCCCCCCccccchhhhcCCHHHHHHHHHHHHHHHHHHHcC-cccc
Q psy18202 5 DTECIVRRRYNDFVWLHNKLVETLPS--------HIIPPLPEKHSLLEHLNRYSKEFILCRMKLLDQFLRRVTSH-PVLS 75 (357)
Q Consensus 5 ~~~~~V~RRysdF~~L~~~L~~~~p~--------~~iPplP~K~~~~~~~~~~~~~fie~R~~~L~~fL~~i~~h-p~L~ 75 (357)
+..|.|.||||||.|||+.|...||. ++||+||+|... +++.+++++|+.+|+.||+.|+.+ |.+.
T Consensus 49 ~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~~~~~~~lP~lP~k~~~-----~~~~~~ie~Rr~~Le~yL~~Ll~~~~~i~ 123 (143)
T d1h6ha_ 49 GSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLPAKVYV-----GVKQEIAEMRIPALNAYMKSLLSLPVWVL 123 (143)
T ss_dssp SCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCCCCCCS-----SCHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred CCEEEEEEeHHHHHHHHHHHHHHCchhhccccccccccCCCccccC-----CCChHHHHHHHHHHHHHHHHHHhCChhhc
Confidence 45799999999999999999999983 579999988764 457899999999999999998875 5799
Q ss_pred CChhhhcccccccc
Q psy18202 76 VNSHAIIFLTAKLA 89 (357)
Q Consensus 76 ~~~~~~~FL~~~~~ 89 (357)
.|+.|..||+....
T Consensus 124 ~s~~v~~Fl~~~~~ 137 (143)
T d1h6ha_ 124 MDEDVRIFFYQSPY 137 (143)
T ss_dssp TCHHHHHHHSCCHH
T ss_pred cCHHHHHHhCCCCc
Confidence 99999999988753
|
| >d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Amphiphysin species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.63 E-value=2.8e-14 Score=122.56 Aligned_cols=197 Identities=11% Similarity=0.058 Sum_probs=160.0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy18202 121 LRHHHSEFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTTASLHKN 200 (357)
Q Consensus 121 ~~e~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~~~~~~~ 200 (357)
.+..|++|++....++.++..++.+.+.+..+....+++......||..+..++..+.+....+..+...++. +..+
T Consensus 7 ~~T~D~~fe~~~~~~~~~e~~l~~l~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~---~~~~ 83 (217)
T d1urua_ 7 DRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASES---LWAD 83 (217)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHH---HHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH---HHHH
Confidence 3445899999999999999999999999999999999999999999999999987776544444444433333 3333
Q ss_pred HhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCccccc
Q psy18202 201 LLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLW 280 (357)
Q Consensus 201 ~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~ 280 (357)
+...+...+.+||..+..++..++.++..|+.+..+|+.+...+.+......+ +
T Consensus 84 -~~~~~~~~v~~pL~~~~~~~~~~~~~~kkr~~~~~dyd~~~~~l~k~~~k~~~--------~----------------- 137 (217)
T d1urua_ 84 -FAHKLGDQVLIPLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANK--------R----------------- 137 (217)
T ss_dssp -HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCB--------T-----------------
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------c-----------------
Confidence 44455668999999999999999999999999999999887777654322100 0
Q ss_pred CCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy18202 281 KSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDRGNC 355 (357)
Q Consensus 281 ~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~W~~ 355 (357)
. ...++.+++.+++.+...|+.++..+..|+++|...+..+|...|..|+..|..||+.+.++|+.
T Consensus 138 --~-------~~~~l~~~e~~~~~a~~~fe~~~~~l~~el~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~ 203 (217)
T d1urua_ 138 --K-------DDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSE 203 (217)
T ss_dssp --T-------BCCTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --c-------chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01234556777889999999999999999999999999999999999999999999999999964
|
| >d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: IMD domain domain: BAP2/IRSp53 N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.7e-05 Score=68.07 Aligned_cols=191 Identities=14% Similarity=0.111 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhC------CchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy18202 135 ISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAG------YEPQLSSVIRQVSKAVDTTASLHKNLLIEPFHE 208 (357)
Q Consensus 135 ~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~------~E~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 208 (357)
+++....++.+.+.+..+.++.+.++.+...|+.++..++. ...+++.+|.++|..+..+...+.. +.+.+..
T Consensus 21 l~~~np~~k~li~~~k~y~~a~~~~~~a~~~f~dal~~~~~~~~~~~~~~~ig~~L~~~~~~~~~i~~~~~~-l~~~~~~ 99 (248)
T d1y2oa1 21 MEQFNPSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEE-MLKSFHN 99 (248)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44455556666666666666666666666666666665542 2345999999999999999988776 7777777
Q ss_pred hcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcccCCCcccccCCccHHH
Q psy18202 209 HNSHPMKDYLM-YIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATSSTNSYSLWKSTSEDR 287 (357)
Q Consensus 209 ~l~~~l~~~~~-~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~k 287 (357)
.|..||..+.. +...+++ .+.....++......+.|...+..++...+.+... .....++
T Consensus 100 ~~i~PL~~~~~~d~k~i~~---~kK~~~k~~k~~~~~l~K~~~~~~k~~kk~~~~~~----------------~~~~~~~ 160 (248)
T d1y2oa1 100 ELLTQLEQKVELDSRYLSA---ALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKN----------------PQKYSDK 160 (248)
T ss_dssp TTHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSC----------------TTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------------chHHHHH
Confidence 89999988755 3344443 34444445555555666666655554433100000 0000122
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 288 LEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 288 i~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
... .++.....+..++.+...+..+.....+.|...+.+.|..|+..++.||.+..++
T Consensus 161 ~~~-------~~e~~~~~~~~~~~~l~~~~~~~~~eerkr~~~lv~~l~~~~~a~~~~~~q~~~~ 218 (248)
T d1y2oa1 161 ELQ-------YIDAISNKQGELENYVSDGYKTALTEERRRFCFLVEKQCAVAKNSAAYHSKGKEL 218 (248)
T ss_dssp HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 2222333444555555555566566666666777899999999999999987764
|
| >d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: Endophilin-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=8.9e-06 Score=69.16 Aligned_cols=185 Identities=9% Similarity=0.090 Sum_probs=117.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHHHHhhC---Cch
Q psy18202 124 HHSEFEQFSQYISNLYEKISAFEKIGTRLYKER----------------------KDYVSEAHQFAIVLNTWAG---YEP 178 (357)
Q Consensus 124 ~d~~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~----------------------~~l~~~~~~~~~~~~~l~~---~E~ 178 (357)
.|++|.+....++.+...+.++.+.+....... ..+......+|..+...+. .+.
T Consensus 19 ld~~f~~lEk~~~~~~~~~~kl~k~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~ 98 (237)
T d2d4ca1 19 LDDDFKEMERKVDVTSRAVMEIMTKTIEYLQPNPASRAKLSMINTMSKIRGQEKGPGYPQAEALLAEAMLKFGRELGDDC 98 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSGGGCSCC-----------------CCCHHHHHHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHhhhcccccccchhhhhHHHHHHHHHhcccCCCCc
Confidence 356777777777777777766666554332110 0011122234444433322 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy18202 179 QLSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNK 258 (357)
Q Consensus 179 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~ 258 (357)
.++.++..+|++...++..... +...+...+..||..++.. .++.+...+......++.....+++++....+
T Consensus 99 ~~~~~L~~~~~~~~~i~~~~~~-~~~~i~~~v~~pl~~~l~~--d~~~~~~~~~~~rk~~d~~~~~~~~~~~k~~~---- 171 (237)
T d2d4ca1 99 NFGPALGEVGEAMRELSEVKDS-LDIEVKQNFIDPLQNLHDK--DLREIQSALQHHLKKLEGRRLDFDYKKKRQGK---- 171 (237)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Confidence 3788999999999999887666 5556667899999988762 33344444334444444444444443332110
Q ss_pred CCCCCCCCCCCcccCCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 259 DSDSSSPTSSTATSSTNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKI 338 (357)
Q Consensus 259 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~ 338 (357)
..+++++.++.+++..+..+..++..+.. +..++...|..|
T Consensus 172 --------------------------------------~~~e~l~~a~~~~e~~~~~~~~~l~~l~~-~~~~~~~~l~~~ 212 (237)
T d2d4ca1 172 --------------------------------------IPDEELRQALEKFDESKEIAESSMFNLLE-MDIEQVSQLSAL 212 (237)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred --------------------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHHHHH
Confidence 12345667788899999999999999875 456777899999
Q ss_pred HHHHHHHHHHHHhccc
Q psy18202 339 ADQQIAYYQQRSDRGN 354 (357)
Q Consensus 339 a~~qi~~~~~~~~~W~ 354 (357)
+..|..||+.+.++++
T Consensus 213 ~~aq~~y~~~~~~~l~ 228 (237)
T d2d4ca1 213 VQAQLEYHKQAVQILQ 228 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998875
|
| >d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: BAR domain domain: DCC-interacting protein 13-alpha, APPL1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.6e-05 Score=66.05 Aligned_cols=190 Identities=16% Similarity=0.256 Sum_probs=131.9
Q ss_pred ChhHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCC-------chhHHHHHHHHHHHHHH
Q psy18202 125 HSEFE----QFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGY-------EPQLSSVIRQVSKAVDT 193 (357)
Q Consensus 125 d~~f~----~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~-------E~~l~~~l~~~~~~~~~ 193 (357)
.|.|. .+...+..++..++++.+....+......+......|...+..++.. ++-+..+|..+++.+..
T Consensus 11 SP~FRa~l~~~E~~~~~l~~~l~kl~k~~~~~~~~~~~~~~~~~~f~~~L~~~~~~~~~~~~dd~~~~~~l~~f~~~~~e 90 (268)
T d2elba1 11 SPQTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDE 90 (268)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSCCC-----CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccCCcHHHHHHHHHHHHHHHH
Confidence 45553 45566677777777777777778777777887777888888776532 12278899999999999
Q ss_pred HHHHHHHHhhhhhhhhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCccc
Q psy18202 194 TASLHKNLLIEPFHEHNSHPMKDYL-MYIDAVKQVLARRDVIQAEHDMCGEELQKKTAEKEQLTNKDSDSSSPTSSTATS 272 (357)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~a~k~~l~~R~~~~~~~~~~~~~l~kk~~~~~kL~~~~~~~~~~~~~~~~~ 272 (357)
+...... +.......+..||..+. ..+..++++-+.=+....+|+.+ .....++... +.
T Consensus 91 l~~~~~~-l~~~~~~~~~~pL~~f~~~di~~~ke~kk~fek~~~~yd~~-------l~k~~~~~k~---k~--------- 150 (268)
T d2elba1 91 LSSCHAV-LSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDAA-------INRYSRLSKK---RE--------- 150 (268)
T ss_dssp HHHHHHH-HHHHHHHHTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTCCCC--------------
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHhccc---CC---------
Confidence 9887665 66666678888888776 45666666555545555555443 2222222211 10
Q ss_pred CCCcccccCCccHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy18202 273 STNSYSLWKSTSEDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSDR 352 (357)
Q Consensus 273 ~~~g~~~~~~~~~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~~ 352 (357)
. ...+.+.+.++..+...++...-.....|..++..+..++-+.|..|...+..|+++..+.
T Consensus 151 ------------~------~~~~~Ea~~~l~~~r~~f~~~~~d~~~~l~~l~~~k~~~~l~~l~~~~~a~~~ff~~~~~~ 212 (268)
T d2elba1 151 ------------N------DKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLGYMQAQISFFKMGSEN 212 (268)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------c------chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1112344556777778888888888889999999999999999999999999999887664
|
| >d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: Formin-binding protein 1, FNBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.04 E-value=0.072 Score=45.03 Aligned_cols=36 Identities=3% Similarity=-0.016 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy18202 316 LRSDLERWRLEKKNDLKKILLKIADQQIAYYQQRSD 351 (357)
Q Consensus 316 ~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~~~ 351 (357)
+...++.+...+...++.+|..|+...+........
T Consensus 212 ~~~~~q~~e~~r~~~~k~~l~~~~~~~~~~~~~~~~ 247 (288)
T d2efla1 212 IFQKIQEMEERRIVRMGESMKTYAEVDRQVIPIIGK 247 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 346778888899999999999999988777665443
|
| >d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: CDC42-interacting protein 4, CIP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.14 Score=42.97 Aligned_cols=64 Identities=8% Similarity=0.009 Sum_probs=38.4
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 286 DRLEKLSTAIPKLTSQLEICDEKLQTAN---------------NHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQR 349 (357)
Q Consensus 286 ~ki~~l~~~i~~le~~~~~~~~~~~~i~---------------~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~~ 349 (357)
.++.++..+.......++.++.++.... ..+...++.....+...++..|..|+..........
T Consensus 158 ~~~~K~~~~~~~~~~~~~~~~~~y~~~l~~~n~~~~~~~~~~~p~~l~~lq~~e~~r~~~lk~~l~~~~~~~~~~~~~~ 236 (279)
T d2efka1 158 ADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQIFDKLQDMDERRATRLGAGYGLLSEAELEVVPII 236 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4455555555555554554444432221 122345667777888888999999988887766543
|
| >d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: Formin-binding protein 1, FNBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=2 Score=35.42 Aligned_cols=64 Identities=6% Similarity=0.088 Sum_probs=40.7
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy18202 285 EDRLEKLSTAIPKLTSQLEICDEKLQTANNHLRSDLERWRLEKKNDLKKILLKIADQQIAYYQQ 348 (357)
Q Consensus 285 ~~ki~~l~~~i~~le~~~~~~~~~~~~i~~~~~~El~rF~~~k~~~l~~~l~~~a~~qi~~~~~ 348 (357)
+.+++++..+......+.+.++.++......+.....+|.......+-+.|..+-...+..-+.
T Consensus 166 ~~~~~K~~~k~~~~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~~q~~e~~r~~~~k~ 229 (288)
T d2efla1 166 KADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRMGE 229 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888888888777777777767765443344444444444444443333
|
| >d1i4da_ a.238.1.2 (A:) Arfaptin, Rac-binding fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: Arfaptin, Rac-binding fragment domain: Arfaptin, Rac-binding fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.66 E-value=4.8 Score=30.90 Aligned_cols=68 Identities=6% Similarity=-0.091 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Q psy18202 127 EFEQFSQYISNLYEKISAFEKIGTRLYKERKDYVSEAHQFAIVLNTWAGYEPQLSSVIRQVSKAVDTT 194 (357)
Q Consensus 127 ~f~~~~~~~~~l~~~l~~l~~~~~~l~k~~~~l~~~~~~~~~~~~~l~~~E~~l~~~l~~~~~~~~~~ 194 (357)
.|.++...+..+...++.+......+......++..+..+|..-...+..-..++..+..++...+.+
T Consensus 14 ~l~~~~~~~~~l~k~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (200)
T d1i4da_ 14 LLRETKRKYESVLQLGRALTAHLYSLLQTQHALGDAFADLSQKSPELQEEFGYNAETQKLLCKNGETL 81 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777777777777777776543332222222444444444443333
|
| >d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: IMD domain domain: BAP2/IRSp53 N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.43 E-value=11 Score=30.07 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMYIDAVKQVLA-RRDVIQAEHDMCGEELQK 247 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~k~~l~-~R~~~~~~~~~~~~~l~k 247 (357)
++..+..++...+.+.....+ .+...|...+......+...+.-+. .+..+-..+..+...+.+
T Consensus 79 ~~~~~~~i~~~~~~l~~~~~~----~~i~PL~~~~~~d~k~i~~~kK~~~k~~k~~~~~l~K~~~~~~k 143 (248)
T d1y2oa1 79 MAEVHRQIQNQLEEMLKSFHN----ELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKK 143 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666665555544332 2223444445555555555544443 233333344444444433
|
| >d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BAR/IMD domain-like superfamily: BAR/IMD domain-like family: FCH domain domain: CDC42-interacting protein 4, CIP4 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.10 E-value=12 Score=30.08 Aligned_cols=40 Identities=13% Similarity=0.090 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhHHHHHHH
Q psy18202 180 LSSVIRQVSKAVDTTASLHKNLLIEPFHEHNSHPMKDYLMY 220 (357)
Q Consensus 180 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 220 (357)
+..++..+-..++..+..+.. +++.+...+..+|..+...
T Consensus 60 ~~~~~~~~~~~~~~~a~~~~~-~~~~l~~~i~~~l~~~~~~ 99 (279)
T d2efka1 60 QQQSFVQILQEVNDFAGQREL-VAENLSVRVCLELTKYSQE 99 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444 4444444555555544433
|