Psyllid ID: psy18229

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQQ
Secondary Structure (PSIPRED)
cEEEEEEEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MFMVASSVVLTVVVLNYhhrtadshempDWIRFLFLQWIpwilcmqrphkkiTRKTIAMSNKMRELELKERTSKSLMANvlnidddfrhvtassmsnssnfiRSEVLLSQQ
Flexible Loop (DISEMBL)
MFMVASSVVLTVVVLNYHHrtadshempDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTAssmsnssnfirsevllsqq
Low Complexity Region (SEG)
MFMvassvvltvvvlNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTAssmsnssnFIRSEVLLSQQ
Disordered region (IsUnstruct)
***VASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR*************************VLNI****************************
Disordered Region (DISOPRED)
MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCM******************************************************************
Disordered Region (DISEMBL)
MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQQ
Disordered Region (DISPRO)
MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP*************************KSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
P48180	498	Acetylcholine receptor su	yes	N/A	0.666	0.148	0.426	2e-10
A8WQK3	499	Acetylcholine receptor su	N/A	N/A	0.684	0.152	0.412	2e-10
Q494W8	412	CHRNA7-FAM7A fusion prote	yes	N/A	0.594	0.160	0.426	1e-09
P36544	502	Neuronal acetylcholine re	no	N/A	0.594	0.131	0.426	2e-09
Q866A2	502	Neuronal acetylcholine re	yes	N/A	0.594	0.131	0.426	3e-09
Q05941	502	Neuronal acetylcholine re	yes	N/A	0.486	0.107	0.462	3e-09
P02712	493	Acetylcholine receptor su	N/A	N/A	0.432	0.097	0.541	3e-09
P22770	502	Neuronal acetylcholine re	yes	N/A	0.594	0.131	0.426	4e-09
P49582	502	Neuronal acetylcholine re	yes	N/A	0.486	0.107	0.462	4e-09
P43681	627	Neuronal acetylcholine re	no	N/A	0.567	0.100	0.446	5e-09

>sp|P48180|ACH1_CAEEL Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis elegans GN=acr-16 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 48/82 (58%), Gaps = 8/82 (9%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIA-- 58
           M +V +S V TV VLN H+RT ++H+M  W R L L WIPWIL M+RP   +T  ++   
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359

Query: 59  MSNKMRELELKERTSKSLMANV 80
            S K        R S+SL+ N+
Sbjct: 360 FSTK------PNRHSESLIRNI 375

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane (By similarity). A subunit of the levamisole-insensitive nicotinic receptor.
Caenorhabditis elegans (taxid: 6239)

>sp|A8WQK3|ACH1_CAEBR Acetylcholine receptor subunit alpha-type acr-16 OS=Caenorhabditis briggsae GN=acr-16 PE=3 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%), Gaps = 4/80 (5%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V +S V TV VLN H+RT ++H+M  W R L L WIPWIL M+RP   +T  ++   
Sbjct: 300 MIVVTASTVFTVYVLNLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSL 359

Query: 61  NKMRELELKERTSKSLMANV 80
              +      R S+SL+ N+
Sbjct: 360 FASK----PNRHSESLIRNI 375

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. A subunit of the levamisole-insensitive nicotinic receptor.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q494W8|CRFM7_HUMAN CHRNA7-FAM7A fusion protein OS=Homo sapiens GN=CHRFAM7A PE=2 SV=1

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R   A  
Sbjct: 211 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 268

Query: 61  NKMRELEL 68
           +K R   L
Sbjct: 269 HKQRRCSL 276

Homo sapiens (taxid: 9606)

>sp|P36544|ACHA7_HUMAN Neuronal acetylcholine receptor subunit alpha-7 OS=Homo sapiens GN=CHRNA7 PE=1 SV=5

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R   A  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358

Query: 61  NKMRELEL 68
           +K R   L
Sbjct: 359 HKQRRCSL 366

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Homo sapiens (taxid: 9606)

>sp|Q866A2|ACHA7_MACMU Neuronal acetylcholine receptor subunit alpha-7 OS=Macaca mulatta GN=CHRNA7 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R   A  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358

Query: 61  NKMRELEL 68
           +K R   L
Sbjct: 359 HKQRRCSL 366

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Macaca mulatta (taxid: 9544)

>sp|Q05941|ACHA7_RAT Neuronal acetylcholine receptor subunit alpha-7 OS=Rattus norvegicus GN=Chrna7 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR 54
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVR 354

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Rattus norvegicus (taxid: 10116)

>sp|P02712|ACHB_TORCA Acetylcholine receptor subunit beta OS=Torpedo californica GN=CHRNB1 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 38/48 (79%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
           M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P  L +QRP
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRP 359

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Torpedo californica (taxid: 7787)

>sp|P22770|ACHA7_CHICK Neuronal acetylcholine receptor subunit alpha-7 OS=Gallus gallus GN=CHRNA7 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R   A  
Sbjct: 301 MIIVGLSVVVTVIVLQYHHHDPDGGKMPKWTRVILLNWCAWFLRMKRPGEDKVRP--ACQ 358

Query: 61  NKMRELEL 68
           +K R   L
Sbjct: 359 HKQRRCSL 366

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Gallus gallus (taxid: 9031)

>sp|P49582|ACHA7_MOUSE Neuronal acetylcholine receptor subunit alpha-7 OS=Mus musculus GN=Chrna7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR 54
           M +V  SVV+TV+VL YHH   D  +MP W R + L W  W L M+RP +   R
Sbjct: 301 MIIVGLSVVVTVIVLRYHHHDPDGGKMPKWTRIILLNWCAWFLRMKRPGEDKVR 354

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane. The channel is blocked by alpha-bungarotoxin.

Mus musculus (taxid: 10090)

>sp|P43681|ACHA4_HUMAN Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH--KKITRKTIA 58
           M  V  S+V+TV VLN HHR+  +H MP W+R +FL  +P +L M+RP   K   R+ I 
Sbjct: 314 MIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLDIVPRLLLMKRPSVVKDNCRRLIE 373

Query: 59  MSNKM 63
             +KM
Sbjct: 374 SMHKM 378

After binding acetylcholine, the AChR responds by an extensive change in conformation that affects all subunits and leads to opening of an ion-conducting channel across the plasma membrane.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
345496845	537	PREDICTED: neuronal acetylcholine recept	0.927	0.191	0.669	5e-36
267925172	481	nicotinic acetylcholine receptor subunit	0.927	0.214	0.669	6e-36
267925140	481	nicotinic acetylcholine receptor subunit	0.927	0.214	0.669	6e-36
267925197	481	nicotinic acetylcholine receptor subunit	0.927	0.214	0.669	6e-36
307207263	235	Acetylcholine receptor subunit alpha-typ	0.936	0.442	0.647	3e-33
408692419	500	nicotinic acetylcholine receptor alpha6	0.936	0.208	0.754	4e-33
408692421	500	nicotinic acetylcholine receptor alpha6	0.936	0.208	0.754	5e-33
327241170	500	nicotinic acetylcholine receptor Paa6 su	0.936	0.208	0.745	1e-32
332017176	216	Acetylcholine receptor subunit alpha-typ	0.936	0.481	0.644	1e-32
408692423	500	nicotinic acetylcholine receptor alpha6	0.936	0.208	0.745	2e-32

>gi|345496845|ref|XP_001601115.2| PREDICTED: neuronal acetylcholine receptor subunit alpha-7 [Nasonia vitripennis]

 Score =  154 bits (390), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 90/103 (87%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR  D++EMP+W + +FLQW+PW+L M RP KKITRKTI MS
Sbjct: 342 MFMVASSVVLTVLVLNYHHRKPDNYEMPNWTKTVFLQWLPWMLRMDRPGKKITRKTILMS 401

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
           N+M+ELEL+ER+SKSL+ANVL+IDDDFR++ +S  + S +++R
Sbjct: 402 NRMKELELQERSSKSLLANVLDIDDDFRNINSSQSAPSRDYMR 444

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925172|gb|ACY82690.1| nicotinic acetylcholine receptor subunit alpha 6 [Nasonia vitripennis]

 Score =  154 bits (390), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 90/103 (87%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR  D++EMP+W + +FLQW+PW+L M RP KKITRKTI MS
Sbjct: 286 MFMVASSVVLTVLVLNYHHRKPDNYEMPNWTKTVFLQWLPWMLRMDRPGKKITRKTILMS 345

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
           N+M+ELEL+ER+SKSL+ANVL+IDDDFR++ +S  + S +++R
Sbjct: 346 NRMKELELQERSSKSLLANVLDIDDDFRNINSSQSAPSRDYMR 388

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925140|gb|ACY82689.1| nicotinic acetylcholine receptor subunit alpha 6 [Nasonia vitripennis]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 90/103 (87%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR  D++EMP+W + +FLQW+PW+L M RP KKITRKTI MS
Sbjct: 286 MFMVASSVVLTVLVLNYHHRKPDNYEMPNWTKTVFLQWLPWMLRMDRPGKKITRKTILMS 345

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
           N+M+ELEL+ER+SKSL+ANVL+IDDDFR++ +S  + S +++R
Sbjct: 346 NRMKELELQERSSKSLLANVLDIDDDFRNINSSQSAPSRDYMR 388

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|267925197|gb|ACY82691.1| nicotinic acetylcholine receptor subunit alpha 6 [Nasonia vitripennis]

 Score =  154 bits (389), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 90/103 (87%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR  D++EMP+W + +FLQW+PW+L M RP KKITRKTI MS
Sbjct: 286 MFMVASSVVLTVLVLNYHHRKPDNYEMPNWTKTVFLQWLPWMLRMDRPGKKITRKTILMS 345

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
           N+M+ELEL+ER+SKSL+ANVL+IDDDFR++ +S  + S +++R
Sbjct: 346 NRMKELELQERSSKSLLANVLDIDDDFRNINSSQSAPSRDYMR 388

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207263|gb|EFN85040.1| Acetylcholine receptor subunit alpha-type acr-16 [Harpegnathos saltator]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 89/105 (84%), Gaps = 1/105 (0%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR+ D + MP+W++ +FLQW+P +L M RP KKIT+KTI MS
Sbjct: 1   MFMVASSVVLTVLVLNYHHRSPDRYVMPNWVKVVFLQWLPCLLRMSRPGKKITKKTILMS 60

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHV-TASSMSNSSNFIRS 104
           N+M+ELEL+ER+SKSL+ANVL+IDDDFRH  +A++ ++  N  RS
Sbjct: 61  NRMKELELQERSSKSLLANVLDIDDDFRHGNSAANPASGYNISRS 105

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408692419|gb|AFU82558.1| nicotinic acetylcholine receptor alpha6 subunit isoform I [Periplaneta americana]

 Score =  145 bits (365), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/106 (75%), Positives = 92/106 (86%), Gaps = 2/106 (1%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTVVVLNYHHRTAD HEMP WI+ +FLQW+PWIL M RP KKITRKTI MS
Sbjct: 308 MFMVASSVVLTVVVLNYHHRTADIHEMPQWIKSVFLQWLPWILGMSRPGKKITRKTILMS 367

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHV--TASSMSNSSNFIRS 104
           N+M+ELELKER+SKSL+ANVL+IDDDFRH   T S+ + S+ F+RS
Sbjct: 368 NRMKELELKERSSKSLLANVLDIDDDFRHCSGTNSTSATSAGFLRS 413

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408692421|gb|AFU82559.1| nicotinic acetylcholine receptor alpha6 subunit isoform VI [Periplaneta americana]

 Score =  144 bits (364), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 80/106 (75%), Positives = 92/106 (86%), Gaps = 2/106 (1%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTVVVLNYHHRTAD HEMP WI+ +FLQW+PWIL M RP KKITRKTI MS
Sbjct: 308 MFMVASSVVLTVVVLNYHHRTADIHEMPQWIKSVFLQWLPWILGMSRPGKKITRKTILMS 367

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHV--TASSMSNSSNFIRS 104
           N+M+ELELKER+SKSL+ANVL+IDDDFRH   T S+ + S+ F+RS
Sbjct: 368 NRMKELELKERSSKSLLANVLDIDDDFRHCSGTNSTSATSAGFLRS 413

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327241170|gb|AEA40429.1| nicotinic acetylcholine receptor Paa6 subunit [Periplaneta americana]

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 92/106 (86%), Gaps = 2/106 (1%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTVVVLNYHHRTAD HEMP WI+ +FLQW+PWIL M RP +KITRKTI MS
Sbjct: 308 MFMVASSVVLTVVVLNYHHRTADIHEMPQWIKSVFLQWLPWILGMSRPGRKITRKTILMS 367

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHV--TASSMSNSSNFIRS 104
           N+M+ELELKER+SKSL+ANVL+IDDDFRH   T S+ + S+ F+RS
Sbjct: 368 NRMKELELKERSSKSLLANVLDIDDDFRHCSGTNSTSATSAGFLRS 413

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017176|gb|EGI57969.1| Acetylcholine receptor subunit alpha-type acr-16 [Acromyrmex echinatior]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/104 (64%), Positives = 85/104 (81%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTV+VLNYHHR+ D + MP+W + +FLQW+P +L M RP KKIT+KTI MS
Sbjct: 1   MFMVASSVVLTVLVLNYHHRSPDRYVMPNWTKIVFLQWLPCVLRMSRPGKKITKKTILMS 60

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRS 104
           N+M+ELEL+ER+SKSL+ANVL+IDDDFRH  +++   S    RS
Sbjct: 61  NRMKELELQERSSKSLLANVLDIDDDFRHGNSAANPASGYISRS 104

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|408692423|gb|AFU82560.1| nicotinic acetylcholine receptor alpha6 subunit isoform VII [Periplaneta americana]

 Score =  143 bits (360), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/106 (74%), Positives = 92/106 (86%), Gaps = 2/106 (1%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           MFMVASSVVLTVVVLNYHHRTAD HEMP WI+ +FL+W+PWIL M RP KKITRKTI MS
Sbjct: 308 MFMVASSVVLTVVVLNYHHRTADIHEMPQWIKSVFLRWLPWILGMSRPGKKITRKTILMS 367

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHV--TASSMSNSSNFIRS 104
           N+M+ELELKER+SKSL+ANVL+IDDDFRH   T S+ + S+ F+RS
Sbjct: 368 NRMKELELKERSSKSLLANVLDIDDDFRHCSGTNSTSATSAGFLRS 413

Source: Periplaneta americana

Species: Periplaneta americana

Genus: Periplaneta

Family: Blattidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0032151	523	nAcRalpha-30D "nicotinic Acety	0.801	0.170	0.674	3.9e-29
FB|FBgn0028875	808	nAcRalpha-34E "nicotinic Acety	0.801	0.110	0.494	2.2e-18
FB|FBgn0086778	564	gfA "giant fibre A" [Drosophil	0.792	0.156	0.464	3.4e-16
WB|WBGene00043066	544	acr-25 [Caenorhabditis elegans	0.594	0.121	0.357	6e-07
WB|WBGene00000055	498	acr-16 [Caenorhabditis elegans	0.549	0.122	0.384	1.1e-06
UNIPROTKB|H9KZ38	190	CHRNB2 "Neuronal acetylcholine	0.450	0.263	0.36	3.4e-06
UNIPROTKB|F1PNA0	395	CHRNA6 "Uncharacterized protei	0.405	0.113	0.478	9.3e-06
UNIPROTKB|F1PQB1	478	CHRNB2 "Uncharacterized protei	0.468	0.108	0.346	9.8e-06
UNIPROTKB|F1MUN1	501	CHRNB2 "Uncharacterized protei	0.468	0.103	0.346	1e-05
UNIPROTKB|F1RGM6	502	CHRNB2 "Uncharacterized protei	0.468	0.103	0.346	1e-05

FB|FBgn0032151 nAcRalpha-30D "nicotinic Acetylcholine Receptor alpha 30D" [Drosophila melanogaster (taxid:7227)]

 Score = 327 (120.2 bits), Expect = 3.9e-29, P = 3.9e-29
 Identities = 60/89 (67%), Positives = 70/89 (78%)

Query:     1 MFMXXXXXXXXXXXXNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
             MFM            NYHHRTAD HEMP WI+ +FLQW+PWIL M RP +KITRKTI +S
Sbjct:   337 MFMVASSVVLTVVVLNYHHRTADIHEMPPWIKSVFLQWLPWILRMGRPGRKITRKTILLS 396

Query:    61 NKMRELELKERTSKSLMANVLNIDDDFRH 89
             N+M+ELELKER+SKSL+ANVL+IDDDFRH
Sbjct:   397 NRMKELELKERSSKSLLANVLDIDDDFRH 425

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0017085 "response to insecticide" evidence=IMP;NAS

GO:0016021 "integral to membrane" evidence=IDA

GO:0046716 "muscle cell homeostasis" evidence=IMP

FB|FBgn0028875 nAcRalpha-34E "nicotinic Acetylcholine Receptor alpha 34E" [Drosophila melanogaster (taxid:7227)]

 Score = 233 (87.1 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/99 (49%), Positives = 61/99 (61%)

Query:     1 MFMXXXXXXXXXXXXNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRK--TIA 58
             MFM            NYHHR AD+HEM +WIR +FL W+PWIL M RP + +  +  T  
Sbjct:   591 MFMVASSVVSTILILNYHHRNADTHEMSEWIRIVFLCWLPWILRMSRPGRPLILEFPTTP 650

Query:    59 MSNKMRE--------LELKERTSKSLMANVLNIDDDFRH 89
              S+   E        +ELKER+SKSL+ANVL+IDDDFRH
Sbjct:   651 CSDTSSERKHQILSDVELKERSSKSLLANVLDIDDDFRH 689

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;IDA;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;IDA;NAS

GO:0006811 "ion transport" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

FB|FBgn0086778 gfA "giant fibre A" [Drosophila melanogaster (taxid:7227)]

 Score = 210 (79.0 bits), Expect = 3.4e-16, P = 3.4e-16
 Identities = 46/99 (46%), Positives = 59/99 (59%)

Query:     1 MFMXXXXXXXXXXXXNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHK--------KI 52
             MFM            NYHHR  D+HEM +WIR +FL W+P IL MQRP +          
Sbjct:   339 MFMVASSVVSTILILNYHHRNPDTHEMSEWIRVIFLYWLPCILRMQRPGQVGYECPPPPS 398

Query:    53 TRKTIAMSNKMREL---ELKERTSKSLMANVLNIDDDFR 88
             +  + A   K +++   ELKER+SKSL+ANVL+IDDDFR
Sbjct:   399 SSSSSASGEKKQQIQNVELKERSSKSLLANVLDIDDDFR 437

GO:0007630 "jump response" evidence=IMP

GO:0007268 "synaptic transmission" evidence=IMP

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=ISS;NAS

GO:0005892 "acetylcholine-gated channel complex" evidence=ISS;NAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0060079 "regulation of excitatory postsynaptic membrane potential" evidence=IMP

GO:0007632 "visual behavior" evidence=IMP

GO:0030425 "dendrite" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

WB|WBGene00043066 acr-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 124 (48.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 25/70 (35%), Positives = 41/70 (58%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITR--KTIAMSNKMRELELKE-RT 72
             N+HHRT  SH+M +  R L L+WIPW+L M+RP   + R  K +   +   E E ++ R 
Sbjct:   318 NFHHRTGKSHQMNNTFRLLMLEWIPWLLMMRRPGY-VARCGKIVKQDDSEDEFEERQTRL 376

Query:    73 SKSLMANVLN 82
              +  +A +++
Sbjct:   377 DQQRIATIIS 386

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

WB|WBGene00000055 acr-16 [Caenorhabditis elegans (taxid:6239)]

 Score = 121 (47.7 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELELKERTSKS 75
             N H+RT ++H+M  W R L L WIPWIL M+RP   +T  ++      +      R S+S
Sbjct:   315 NLHYRTPETHDMGPWTRNLLLYWIPWILRMKRPGHNLTYASLPSLFSTKP----NRHSES 370

Query:    76 LMANV 80
             L+ N+
Sbjct:   371 LIRNI 375

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

UNIPROTKB|H9KZ38 CHRNB2 "Neuronal acetylcholine receptor subunit beta-2" [Gallus gallus (taxid:9031)]

 Score = 108 (43.1 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 18/50 (36%), Positives = 31/50 (62%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRE 65
             N HHR+  +H MP W+R LFL+ +P +L M++P +   R+ +    + +E
Sbjct:    66 NVHHRSPTTHTMPPWVRTLFLRKLPALLFMKQPQQNCARQRLRQRRQTQE 115

GO:0006811 "ion transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PNA0 CHRNA6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 111 (44.1 bits), Expect = 9.3e-06, P = 9.3e-06
 Identities = 22/46 (47%), Positives = 31/46 (67%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSN 61
             N H+RT  +H MP W++ +FLQ +P IL M+RP  K+ RKT +  N
Sbjct:   227 NIHYRTPATHTMPKWVKTVFLQLLPQILMMRRPLDKM-RKTSSDKN 271

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

UNIPROTKB|F1PQB1 CHRNB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 112 (44.5 bits), Expect = 9.8e-06, P = 9.8e-06
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELE 67
             N HHR+  +H M  W++ +FL+ +P +L MQ+P  +  R+ + +  + RE E
Sbjct:   320 NVHHRSPTTHTMAPWVKVVFLEKLPTLLFMQQPRHRCARQRLRLRRRQRERE 371

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

UNIPROTKB|F1MUN1 CHRNB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELE 67
             N HHR+  +H M  W++ +FL+ +P +L MQ+P  +  R+ + +  + RE E
Sbjct:   320 NVHHRSPTTHTMAPWVKVVFLEKLPTLLFMQQPRHRCARQRLRLRRRQRERE 371

GO:0060084 "synaptic transmission involved in micturition" evidence=IEA

GO:0051963 "regulation of synapse assembly" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IEA

GO:0045759 "negative regulation of action potential" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0045188 "regulation of circadian sleep/wake cycle, non-REM sleep" evidence=IEA

GO:0042320 "regulation of circadian sleep/wake cycle, REM sleep" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IEA

GO:0021771 "lateral geniculate nucleus development" evidence=IEA

GO:0021631 "optic nerve morphogenesis" evidence=IEA

GO:0021562 "vestibulocochlear nerve development" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0015464 "acetylcholine receptor activity" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0001661 "conditioned taste aversion" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

UNIPROTKB|F1RGM6 CHRNB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 112 (44.5 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 18/52 (34%), Positives = 32/52 (61%)

Query:    16 NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMSNKMRELE 67
             N HHR+  +H M  W++ +FL+ +P +L MQ+P  +  R+ + +  + RE E
Sbjct:   320 NVHHRSPTTHTMAPWVKVVFLEKLPTLLFMQQPRHRCARQRLRLRRRQRERE 371

GO:0060084 "synaptic transmission involved in micturition" evidence=IEA

GO:0051963 "regulation of synapse assembly" evidence=IEA

GO:0051899 "membrane depolarization" evidence=IEA

GO:0048814 "regulation of dendrite morphogenesis" evidence=IEA

GO:0045759 "negative regulation of action potential" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEA

GO:0045188 "regulation of circadian sleep/wake cycle, non-REM sleep" evidence=IEA

GO:0042320 "regulation of circadian sleep/wake cycle, REM sleep" evidence=IEA

GO:0042220 "response to cocaine" evidence=IEA

GO:0042166 "acetylcholine binding" evidence=IEA

GO:0042113 "B cell activation" evidence=IEA

GO:0042053 "regulation of dopamine metabolic process" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0035095 "behavioral response to nicotine" evidence=IEA

GO:0033603 "positive regulation of dopamine secretion" evidence=IEA

GO:0032226 "positive regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0021952 "central nervous system projection neuron axonogenesis" evidence=IEA

GO:0021771 "lateral geniculate nucleus development" evidence=IEA

GO:0021631 "optic nerve morphogenesis" evidence=IEA

GO:0021562 "vestibulocochlear nerve development" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=IEA

GO:0015464 "acetylcholine receptor activity" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008542 "visual learning" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0006939 "smooth muscle contraction" evidence=IEA

GO:0006816 "calcium ion transport" evidence=IEA

GO:0005892 "acetylcholine-gated channel complex" evidence=IEA

GO:0004889 "acetylcholine-activated cation-selective channel activity" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0001661 "conditioned taste aversion" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
pfam02932	228	pfam02932, Neur_chan_memb, Neurotransmitter-gated	8e-18
TIGR00860	459	TIGR00860, LIC, Cation transporter family protein	0.002

>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel transmembrane region

 Score = 74.6 bits (184), Expect = 8e-18
 Identities = 25/50 (50%), Positives = 37/50 (74%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHK 50
           MF+  +SV   VVVLN HHR+  +H+MP+W+R LFL+ +P +L M+RP +
Sbjct: 66  MFVFTASVEYAVVVLNVHHRSPSTHKMPEWVRKLFLRKLPRLLFMKRPPE 115

This family includes the four transmembrane helices that form the ion channel. Length = 228

>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 13/81 (16%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP--------HKKI 52
           M  V  +++ T  V   HH+     +     R L L+   W LC Q P            
Sbjct: 311 MAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGEDYRRPALDHA 365

Query: 53  TRKTIAMSNKMRELELKERTS 73
           +  ++ M  K     L+  T 
Sbjct: 366 SLSSVEMRAKDGGRGLESPTE 386

The Ligand-gated Ion Channel (LIC) Family of Neurotransmitter Receptors TC 1.A.9)Members of the LIC family of ionotropic neurotransmitter receptors are found only in vertebrate and invertebrate animals. They exhibit receptor specificity for (1)acetylcholine, (2) serotonin, (3) glycine, (4) glutamate and (5) g-aminobutyric acid (GABA). All of these receptor channels are probably hetero- orhomopentameric. The best characterized are the nicotinic acetyl-choline receptors which are pentameric channels of a2bgd subunit composition. All subunits arehomologous. The three dimensional structures of the protein complex in both the open and closed configurations have been solved at 0.9 nm resolution.The channel protein complexes of the LIC family preferentially transport cations or anions depending on the channel (e.g., the acetylcholine receptors are cationselective while glycine receptors are anion selective) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 459

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG3646|consensus	486		99.46
PF02932	237	Neur_chan_memb: Neurotransmitter-gated ion-channel	98.69
KOG3645|consensus	449		98.12
TIGR00860	459	LIC Cation transporter family protein. selective w	98.11

>KOG3646|consensus

Probab=99.46  E-value=7.2e-15  Score=120.99  Aligned_cols=49  Identities=61%  Similarity=1.227  Sum_probs=47.4

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH   49 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~   49 (111)
                      |++|++|+++||+|||+|||+|++|+|++|+|.+||+|+||+|+|+||.
T Consensus       306 m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r~vfL~wlpwll~M~rP~  354 (486)
T KOG3646|consen  306 MFIVAASVVFTVIVLNLHHRTPETHEMSPWTRSVFLEWLPWLLRMKRPF  354 (486)
T ss_pred             HHHHHhhheeEEEEEeeeccCccccccCHHHHHHHHHHHHHHHHhcCCC
Confidence            6889999999999999999999999999999999999999999999993

>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]

Probab=98.69  E-value=3.4e-10  Score=78.94  Aligned_cols=52  Identities=44%  Similarity=0.852  Sum_probs=22.4

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCcc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKI   52 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~~   52 (111)
                      |+++++++..|++++|+||+++..++||+|+|.++++++|+++||++++...
T Consensus        66 ~~v~~~~~~~avv~~~~~~~~~~~~~~~~~~r~~~l~~l~~~l~~~~~~~~~  117 (237)
T PF02932_consen   66 MFVFSASLEFAVVVYNIHHRGPRTRPMPPWVRRLFLEKLARLLCMKRPSEKE  117 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTT-S--------------------------
T ss_pred             chhhhHHHHhhhhhhhhcccccccccccchhHHHHhhhhhhhhhhccccccc
Confidence            4567889999999999999999899999999999999999999999987653

Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....

>KOG3645|consensus

Probab=98.12  E-value=4.5e-07  Score=74.89  Aligned_cols=50  Identities=50%  Similarity=0.924  Sum_probs=47.1

Q ss_pred             CEeeheehheeeeEEEcccCCCCCC-CCChhhHHhhhccccceeeeeCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSH-EMPDWIRFLFLQWIPWILCMQRPHK   50 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~-~mP~WvR~l~L~~lp~lL~m~~p~~   50 (111)
                      |+++++|++.|++++|+|||.+.++ +||.|++++++..+|+++++++++.
T Consensus       311 m~~~~~sv~~tv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (449)
T KOG3645|consen  311 MVLVTISVVVTVVILNLHHRSPTTHPPMPPWVRRVFLEKLPRLLLMSRPED  361 (449)
T ss_pred             HHHHHHHHHHheeEEeeecccCCCCCCCchHHHHHHHHHHHHHHhcCCccc
Confidence            5788999999999999999999998 8999999999999999999998875

>TIGR00860 LIC Cation transporter family protein

Probab=98.11  E-value=2.8e-07  Score=76.26  Aligned_cols=46  Identities=30%  Similarity=0.512  Sum_probs=42.2

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||++.+++     |.++++++|+++||++|++.
T Consensus       311 ~~~v~~sli~tv~V~~~~~~~~~~~~-----r~~~l~~l~~~l~~~~~~~~  356 (459)
T TIGR00860       311 MAFVFLALLETAFVNYVHHKDPAQGK-----RHLLLERCAWRLCKQEPGED  356 (459)
T ss_pred             HHHHHHHHHHHHhheeEEccCCCCCc-----eehHHhhchHHhcccCcccc
Confidence            56789999999999999999998876     99999999999999999764

selective while glycine receptors are anion selective).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
4aq5_B	493	Gating Movement In Acetylcholine Receptor Analysed		5e-05
1oed_B	250	Structure Of Acetylcholine Receptor Pore From Elect		6e-05

>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By Time- Resolved Electron Cryo-Microscopy (Closed Class) Length = 493

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 16  NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
           N HHR+ ++H MP+WIR +F++ +P  L +QRP
Sbjct: 327 NLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRP 359

>pdb|1OED|B Chain B, Structure Of Acetylcholine Receptor Pore From Electron Images Length = 250

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 16  NYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
           N HHR+ ++H MP+WIR +F++ +P  L +QRP
Sbjct: 87  NLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRP 119

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	5e-20
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	3e-19
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	2e-18
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	6e-18
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	2e-16
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	1e-15
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	2e-15
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	3e-14
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	9e-14
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	2e-11
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	2e-09
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	5e-09
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	1e-08
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	2e-08
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	6e-06
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	9e-06
2lkg_A	140	Acetylcholine receptor; transmembrane domain, SIGN	6e-05

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E Length = 488

 Score = 82.5 bits (203), Expect = 5e-20
 Identities = 27/119 (22%), Positives = 48/119 (40%), Gaps = 8/119 (6%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKIT------- 53
           MF+    V   V+VLN   RT ++H + + I+ LFL+++P  L M     + T       
Sbjct: 290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSEETPEKPQPR 349

Query: 54  -RKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQQ 111
            R +  +  K  E  LK+  S+ +     +     R    +S  +    +     L+  
Sbjct: 350 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLANF 408

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B Length = 493

 Score = 80.6 bits (198), Expect = 3e-19
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P  L +QRP    +  +    
Sbjct: 312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 371

Query: 61  NKMRELELKERTSKS 75
                 E   R    
Sbjct: 372 ISRANDEYFIRKPAG 386

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C Length = 522

 Score = 77.9 bits (191), Expect = 2e-18
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 6/89 (6%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V   VV   +VLN+H RT  +H +   ++ +FL+ +P IL M R  +          
Sbjct: 317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIEQP------ 370

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRH 89
           +   +L+L+  +S   ++      +    
Sbjct: 371 DWQNDLKLRRSSSVGYISKAQEYFNIKSR 399

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens} Length = 137

 Score = 72.5 bits (178), Expect = 6e-18
 Identities = 16/51 (31%), Positives = 24/51 (47%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK 51
           M  V  S+V+TV VLN HHR+ ++H            W+  I+C+      
Sbjct: 78  MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFIIVCLLGTVGL 128

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A Length = 461

 Score = 72.0 bits (176), Expect = 2e-16
 Identities = 20/50 (40%), Positives = 32/50 (64%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHK 50
           M  V SS+++TVVV+N HHR+  +H MP W+R +F+  IP ++      +
Sbjct: 306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKR 355

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B Length = 227

 Score = 68.3 bits (166), Expect = 1e-15
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M  V SS+++TVVV+N HHR+  +H MP W+R +F+  IP ++      +    K     
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQENKI 131

Query: 61  NKMR 64
               
Sbjct: 132 FADD 135

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A Length = 260

 Score = 68.8 bits (167), Expect = 2e-15
 Identities = 19/100 (19%), Positives = 37/100 (37%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V   +V   +VLN+H RT  +H +   ++ +FL+ +P IL M R  +          
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSN 100
              R   +   +      N+ +  +      +        
Sbjct: 132 KLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPR 171

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 Length = 260

 Score = 65.3 bits (158), Expect = 3e-14
 Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKIT------- 53
           MF+    V+  V+VLN   RT ++H + + I+ LFL ++P  L MQ    + T       
Sbjct: 73  MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132

Query: 54  -RKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSE 105
            R +  +  K  E  LK+  S+ +     +     R    +S  +    +   
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLY 185

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B Length = 250

 Score = 63.8 bits (154), Expect = 9e-14
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P  L +QRP    +  +    
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131

Query: 61  NKMRELELKERTSKS 75
                 E   R    
Sbjct: 132 ISRANDEYFIRKPAG 146

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A Length = 164

 Score = 56.0 bits (135), Expect = 2e-11
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLF------LQWIPWILCMQRPHKK 51
           M +V  S+V +V VLN HHR+  +H       ++         WI   +C+      
Sbjct: 99  MVLVTFSIVTSVCVLNVHHRSPTTHTPRGGGGYVAMVIDRLFLWIFVFVCVFGTIGM 155

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 11/48 (22%), Positives = 17/48 (35%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
           MF+    V   V+VLN   RT ++H   +   F+              
Sbjct: 283 MFVSLVIVTNCVIVLNVSLRTPNTHSCVEACNFIAKSTKEQNDSGSEN 330

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 369

 Score = 51.0 bits (122), Expect = 5e-09
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH 49
           M +V   VV   +VLN+H RT  +H   D   ++  Q        +   
Sbjct: 281 MSLVTGVVVNCGIVLNFHFRTPSTHSGIDSTNYIVKQIKEKNAYDEEVG 329

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 50.3 bits (120), Expect = 1e-08
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPH 49
           M +VA SV+L+VVVLN HHR+ ++HE  + I+++  Q            
Sbjct: 279 MILVAFSVILSVVVLNLHHRSPNTHEAVEAIKYIAEQLESASEFDDLKK 327

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata} Length = 370

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQ 37
           M  V SS+++TVVV+N HHR+  +H   + ++++   
Sbjct: 282 MIFVISSIIVTVVVINTHHRSPSTHSAIEGVKYIAEH 318

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ... Length = 321

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 8/53 (15%), Positives = 13/53 (24%), Gaps = 8/53 (15%)

Query: 1   MFMVASSVVLTVVV--LNYHHRTADSHEMPDWIRFLF------LQWIPWILCM 45
                 +V+   V   L    + A +  +    R  F         I   L  
Sbjct: 267 YLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLANIILAFLFF 319

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A Length = 322

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 5/48 (10%), Positives = 15/48 (31%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRP 48
              + ++++L +   +      +   +    R  F      I C+   
Sbjct: 270 YGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAIGCVLVI 317

>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A Length = 140

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 1   MFMVASSVVLTVVVLNYHHRT 21
              V SS+ +T  V+N HHR+
Sbjct: 120 KEFVESSIKITEEVINTHHRS 140

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
1oed_B	250	Acetylcholine receptor protein, beta chain; ION ch	99.29
1oed_C	260	Acetylcholine receptor protein, delta chain; ION c	99.28
4aq5_E	488	Acetylcholine receptor gamma subunit; membrane pro	99.24
1oed_E	260	Acetylcholine receptor protein, gamma chain; ION c	99.24
4aq5_C	522	Acetylcholine receptor delta subunit; membrane pro	99.2
4aq5_B	493	Acetylcholine receptor beta subunit; membrane prot	99.19
4aq5_A	461	Acetylcholine receptor subunit alpha; membrane pro	99.15
1oed_A	227	Acetylcholine receptor protein, alpha chain; ION c	99.14
3rqw_A	322	ELIC pentameric ligand gated ION channel from ERW	97.75
2lly_A	137	Neuronal acetylcholine receptor subunit alpha-4; t	97.45
3tlw_A	321	GLR4197 protein, GLIC; Cys-loop receptor family, m	96.19
3rhw_A	347	Avermectin-sensitive glutamate-gated chloride CHA	95.47
2ksr_A	164	Neuronal acetylcholine receptor subunit beta-2; ni	92.19
2bg9_E	370	Acetylcholine receptor protein, gamma chain; ION c	87.79
2bg9_C	369	Acetylcholine receptor protein, delta chain; ION c	87.42
2bg9_B	370	Acetylcholine receptor protein, beta chain; ION ch	86.88
2bg9_A	370	Acetylcholine receptor protein, alpha chain; ION c	84.35

>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B

Probab=99.29  E-value=3.9e-14  Score=108.24  Aligned_cols=51  Identities=51%  Similarity=0.925  Sum_probs=19.6

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||++.+|+||+|+|++|++|+|++|||++|+++
T Consensus        72 m~~v~~sl~~tv~Vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~p~~~  122 (250)
T 1oed_B           72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT  122 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred             HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEecCCCcc
Confidence            567899999999999999999999999999999999999999999999864

>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A

Probab=99.28  E-value=4.1e-14  Score=108.63  Aligned_cols=51  Identities=33%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++|++|+|++|||++|+++
T Consensus        72 m~~v~~s~~~tv~vl~~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~  122 (260)
T 1oed_C           72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADES  122 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHHHHHHHHheeeeeccCCCCCCccHHHHHHHHHhhhHHhEecCCccc
Confidence            568899999999999999999999999999999999999999999999864

>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E

Probab=99.24  E-value=1.7e-13  Score=112.47  Aligned_cols=51  Identities=33%  Similarity=0.525  Sum_probs=24.7

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||++|+++
T Consensus       290 m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~p~~~  340 (488)
T 4aq5_E          290 MFVSLVIVTNCVIVLNVSLRTPNTHSLSEKIKHLFLEFLPKYLGMHLEPSE  340 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSTTTCC-------------------------
T ss_pred             HHHHHHHHHHHhhEEEEEccCCCCCcCChhHhhhhHhhCcceeEecCCccc
Confidence            568899999999999999999999999999999999999999999999764

>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1

Probab=99.24  E-value=8.6e-14  Score=106.84  Aligned_cols=51  Identities=37%  Similarity=0.606  Sum_probs=19.5

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee-CCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ-RPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~-~p~~~   51 (111)
                      |++|++|++.|++|+|+|||++.+|+||+|+|++|++|+|++|||+ +|+++
T Consensus        73 m~~v~~sl~~tv~vln~~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~rp~~~  124 (260)
T 1oed_E           73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEE  124 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------------------------------
T ss_pred             HHHHHHHHHHHhheeeeeccCCCCCCcchHHHHHHHHhhhHHhEeccCCccc
Confidence            5678999999999999999999999999999999999999999999 99764

>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C

Probab=99.20  E-value=3e-13  Score=111.83  Aligned_cols=51  Identities=33%  Similarity=0.525  Sum_probs=23.7

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee-CCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ-RPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~-~p~~~   51 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||+ +|+++
T Consensus       317 m~lv~lSll~tviVlnl~~r~~~~~~mp~wvr~~fl~~l~~~l~m~~~p~~~  368 (522)
T 4aq5_C          317 MSLVTGVVVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRVDEIE  368 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCCSSCC---------------------------
T ss_pred             HHHHHHHHHHHheEEEEEccCCCCCCCChHHHHHHHHhCchheEEecCCCcc
Confidence            5688999999999999999999999999999999999999999999 98654

>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B

Probab=99.19  E-value=3.8e-13  Score=110.49  Aligned_cols=51  Identities=51%  Similarity=0.925  Sum_probs=23.5

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++|||++|+++
T Consensus       312 m~~v~lsll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~m~~~~~~  362 (493)
T 4aq5_B          312 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT  362 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTTC--------------------------
T ss_pred             HHHHHHHHHHHHhheeeeccCCCCCcCCHHHHHHHHHhCcceEEecCCccc
Confidence            567899999999999999999999999999999999999999999999764

>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A

Probab=99.15  E-value=7.3e-13  Score=108.12  Aligned_cols=51  Identities=45%  Similarity=0.883  Sum_probs=23.5

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceee---eeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILC---MQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~---m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++||+++|++||   |++|+++
T Consensus       306 m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~l~~l~~~l~~~~~~~p~~~  359 (461)
T 4aq5_A          306 MIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIFINTIPNVMFFSTMKRASKE  359 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCTTTC-----------------------------
T ss_pred             HHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHHHHhhHHHhhhhhcCCCCcc
Confidence            56789999999999999999999999999999999999999999   9998753

>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B

Probab=99.14  E-value=4.9e-13  Score=100.86  Aligned_cols=50  Identities=44%  Similarity=0.874  Sum_probs=19.5

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeee---CCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQ---RPHK   50 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~---~p~~   50 (111)
                      |++|++|++.|++|+|+|||+|.+|+||+|+|++|++|+|++|||+   +|++
T Consensus        72 m~~v~~sl~~tv~vln~~~r~~~~~~mp~wvr~~~l~~l~~~l~m~~~~rp~~  124 (227)
T 1oed_A           72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASK  124 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCcchHHHHHHHHhccHhheeccccCCcc
Confidence            5678999999999999999999999999999999999999999995   7764

>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*

Probab=97.75  E-value=2.6e-07  Score=71.26  Aligned_cols=42  Identities=10%  Similarity=0.065  Sum_probs=37.8

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccce
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWI   42 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~l   42 (111)
                      |+++++|++.+++|+++|||++.+|+||+|+|++|+..+..+
T Consensus       270 ~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~~fl~~~~~~  311 (322)
T 3rqw_A          270 YGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAI  311 (322)
T ss_dssp             HHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTTHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHccCccccCcchHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999887544

>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}

Probab=97.45  E-value=5.1e-06  Score=57.96  Aligned_cols=40  Identities=40%  Similarity=0.542  Sum_probs=34.6

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCC-ChhhHHhhhcccc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEM-PDWIRFLFLQWIP   40 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~m-P~WvR~l~L~~lp   40 (111)
                      |+++++|++.|++|+|+|||+|++|+| |.|++++++-..+
T Consensus        78 ~~~v~~sl~~tv~V~~~~~r~~~~~~mp~~~~dr~~lwif~  118 (137)
T 2lly_A           78 MIFVTLSIVITVFVLNVHHRSPETHTGGGGGIDRIFLWMFI  118 (137)
T ss_dssp             HHHHHHHHHHHHHHHHCCSSCSSCCSSCSSSHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhhhhhHHhcCCccCccchHHHHHHHHHHHH
Confidence            457889999999999999999999999 5899999984433

>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...

Probab=96.19  E-value=5.9e-05  Score=57.93  Aligned_cols=37  Identities=11%  Similarity=0.079  Sum_probs=32.6

Q ss_pred             CEeeheehheeeeEEEcccCCCCCC--CCChhhHHhhhc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSH--EMPDWIRFLFLQ   37 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~--~mP~WvR~l~L~   37 (111)
                      |++|++|++.+++|+++||+++..+  +||+|+|++|.-
T Consensus       267 ~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~  305 (321)
T 3tlw_A          267 YLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPV  305 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehH
Confidence            4678899999999999999999775  899999998764

>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*

Probab=95.47  E-value=7.3e-05  Score=58.10  Aligned_cols=45  Identities=7%  Similarity=0.191  Sum_probs=39.6

Q ss_pred             CEeeheehheeeeEEEcccCCCCC-CCCChhhHHhhhccccceeee
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADS-HEMPDWIRFLFLQWIPWILCM   45 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~-~~mP~WvR~l~L~~lp~lL~m   45 (111)
                      |++|.+|++.+++|.+++++++.. ++||+|++.+++.++|.++++
T Consensus       284 ~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~i  329 (347)
T 3rhw_A          284 MTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFFV  329 (347)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHHH
Confidence            457789999999999999988755 689999999999999998876

>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A

Probab=92.19  E-value=0.0056  Score=43.70  Aligned_cols=26  Identities=46%  Similarity=0.727  Sum_probs=23.6

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHE   26 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~   26 (111)
                      |+++++|++.|++|+|+|||++.+|+
T Consensus        99 m~~v~~sll~tv~Vl~~~~r~~~~~~  124 (164)
T 2ksr_A           99 MVLVTFSIVTSVCVLNVHHRSPTTHT  124 (164)
T ss_dssp             HHHHHHHHHTHHHHHHHHTSSCCCCS
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCC
Confidence            46788999999999999999999887

>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=87.79  E-value=0.023  Score=44.42  Aligned_cols=26  Identities=38%  Similarity=0.510  Sum_probs=23.3

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHE   26 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~   26 (111)
                      |++|++|++.+++|+|+|||+|.+|+
T Consensus       283 ~~~v~~sll~~v~v~~~~~r~~~~~~  308 (370)
T 2bg9_E          283 MFVSLVIVTNCVIVLNVSLRTPNTHS  308 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSTTTCC
T ss_pred             HHHHHHHHHHHhhheeeeccCCCCCc
Confidence            46788999999999999999999886

>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=87.42  E-value=0.022  Score=44.55  Aligned_cols=26  Identities=42%  Similarity=0.625  Sum_probs=23.4

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHE   26 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~   26 (111)
                      |++|++|++.+++|+|+|||+|.+|+
T Consensus       281 ~~~v~~sll~~v~v~~~~~r~~~~~~  306 (369)
T 2bg9_C          281 MSLVTGVVVNCGIVLNFHFRTPSTHS  306 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSTTTCC
T ss_pred             HHHHHHHHHHHhheeeeeccCCCCCc
Confidence            46788999999999999999999886

>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=86.88  E-value=0.025  Score=44.24  Aligned_cols=26  Identities=62%  Similarity=0.962  Sum_probs=23.3

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHE   26 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~   26 (111)
                      |++|++|++.+++|+|+|||+|.+|+
T Consensus       279 ~~~v~~sll~~v~v~~~~~r~~~~~~  304 (370)
T 2bg9_B          279 MILVAFSVILSVVVLNLHHRSPNTHE  304 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCTTTCC
T ss_pred             HHHHHHHHHHHHHhhhhhccCCCCCc
Confidence            46788999999999999999998886

>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}

Probab=84.35  E-value=0.035  Score=43.39  Aligned_cols=25  Identities=52%  Similarity=0.877  Sum_probs=22.5

Q ss_pred             CEeeheehheeeeEEEcccCCCCCC
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSH   25 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~   25 (111)
                      |++|++|++.+++|+|+|||++.+|
T Consensus       282 ~~~v~~sl~~~~~v~~~~~r~~~~~  306 (370)
T 2bg9_A          282 MIFVISSIIVTVVVINTHHRSPSTH  306 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSTTTC
T ss_pred             HHHHHHHHHHHHHHHhhhccCcccc
Confidence            4678899999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1oedc_	260	f.36.1.1 (C:) Acetylcholine receptor protein, delt	2e-10
d1oedb_	250	f.36.1.1 (B:) Acetylcholine receptor protein, beta	2e-10
d1oeda_	227	f.36.1.1 (A:) Acetylcholine receptor protein, alph	7e-10
d1oede_	260	f.36.1.1 (E:) Acetylcholine receptor protein, gamm	2e-09

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 53.6 bits (128), Expect = 2e-10
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +V   +V   +VLN+H RT  +H +   ++ +FL+ +P IL M R  +          
Sbjct: 72  MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADESEQPDWQNDL 131

Query: 61  NKMRE------LELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSE 105
              R        + +E  +    + ++      RH     ++    F  + 
Sbjct: 132 KLRRSSSVGYISKAQEYFNIKSRSELMFEKQSERHGLVPRVTPRIGFGNNN 182

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 250

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 53.2 bits (127), Expect = 2e-10
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M +VA SV+L+VVVLN HHR+ ++H MP+WIR +F++ +P  L +QRP    +  +    
Sbjct: 72  MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTTPSPDSKPTI 131

Query: 61  NKMRELELKERTSKS 75
                 E   R    
Sbjct: 132 ISRANDEYFIRKPAG 146

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 227

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 52.0 bits (124), Expect = 7e-10
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 1/103 (0%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKITRKTIAMS 60
           M  V SS+++TVVV+N HHR+  +H MP W+R +F+  IP ++      +    K     
Sbjct: 72  MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRASKEKQ-ENK 130

Query: 61  NKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIR 103
               ++++ + + K +   V+      ++    S      +I 
Sbjct: 131 IFADDIDISDISGKQVTGEVIFQTPLIKNPDVKSAIEGVKYIA 173

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 260

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 1   MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKKIT------- 53
           MF+    V+  V+VLN   RT ++H + + I+ LFL ++P  L MQ    + T       
Sbjct: 73  MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSEETPEKPQPR 132

Query: 54  -RKTIAMSNKMRELELKERTSKSLMANVLNIDDDFRHVTASSMSNSSNFIRSEVLLSQ 110
            R +  +  K  E  LK+  S+ +     +     R    +S  +    +     L+ 
Sbjct: 133 RRSSFGIMIKAEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLAN 190

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1oedc_	260	Acetylcholine receptor protein, delta chain {Marbl	99.1
d1oedb_	250	Acetylcholine receptor protein, beta chain {Marble	99.09
d1oede_	260	Acetylcholine receptor protein, gamma chain {Marbl	98.74
d1oeda_	227	Acetylcholine receptor protein, alpha chain {Marbl	98.5

>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, delta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.10  E-value=4.3e-13  Score=98.01  Aligned_cols=51  Identities=33%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |++|++|++.|++|+|+|||++.+++||+|+|+++++++|+++||+++.+.
T Consensus        72 ~~~v~~s~~~t~~Vl~~~~~~~~~~~~p~w~R~~~l~~l~~~l~m~~~~~~  122 (260)
T d1oedc_          72 MSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKLPRILHMSRADES  122 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHHHHHHHHhheeeeecccccCccchHHHHHHHHhccHHHcccccccc
Confidence            568899999999999999999999999999999999999999999988654

>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, beta chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.09  E-value=6.4e-13  Score=97.03  Aligned_cols=51  Identities=51%  Similarity=0.925  Sum_probs=19.4

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |+++++|++.|++|+|+||+++.+++||+|+|++|++|+|+++||++|...
T Consensus        72 ~~~~~~~~~~~~~v~~~~~~~~~~~p~P~wvR~lfL~~la~ll~m~~~~~~  122 (250)
T d1oedb_          72 MILVAFSVILSVVVLNLHHRSPNTHTMPNWIRQIFIETLPPFLWIQRPVTT  122 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC------------------------------
T ss_pred             HHHHHHHHHHHHhheeeeccCcccCCcchHHHHHHHHhhhHHhcccCCCCc
Confidence            467899999999999999999999999999999999999999999988754

>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, gamma chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.74  E-value=5.6e-11  Score=86.92  Aligned_cols=51  Identities=35%  Similarity=0.524  Sum_probs=19.4

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |+++++|++.|++|+|+||+++.+++||+|+|.++++|+|+++||+.+...
T Consensus        73 ~~~v~~sl~~t~iVl~~~~~~~~~~~~p~~~r~~~l~~l~~~l~~~~~~~~  123 (260)
T d1oede_          73 MFVSMLIVMNCVIVLNVSLRTPNTHSLSEKIKHLFLGFLPKYLGMQLEPSE  123 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHHHHHHHHheeeEEccCCCCCCCcchhHHHHhhhCCceeeecCCccc
Confidence            467899999999999999999999999999999999999999999987654

>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Membrane and cell surface proteins and peptides
fold: Neurotransmitter-gated ion-channel transmembrane pore
superfamily: Neurotransmitter-gated ion-channel transmembrane pore
family: Neurotransmitter-gated ion-channel transmembrane pore
domain: Acetylcholine receptor protein, alpha chain
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=98.50  E-value=7.1e-10  Score=79.93  Aligned_cols=51  Identities=39%  Similarity=0.806  Sum_probs=19.3

Q ss_pred             CEeeheehheeeeEEEcccCCCCCCCCChhhHHhhhccccceeeeeCCCCc
Q psy18229          1 MFMVASSVVLTVVVLNYHHRTADSHEMPDWIRFLFLQWIPWILCMQRPHKK   51 (111)
Q Consensus         1 Mvlv~lSlv~Tv~VLn~h~r~~~~~~mP~WvR~l~L~~lp~lL~m~~p~~~   51 (111)
                      |+++++|++.|++|+|+||+++..+++|+|+|.++++++++++|++.+.+.
T Consensus        72 ~~~v~~sli~tiiV~~l~~~~~~~~~~p~w~r~~~~~~l~~~l~~~~~~~~  122 (227)
T d1oeda_          72 MIFVISSIIITVVVINTHHRSPSTHTMPQWVRKIFIDTIPNVMFFSTMKRA  122 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------------------------------
T ss_pred             HHHHHHHHHHHHHHhheeccCCCCCCCchHHHHHHHHhhhHHhccCCcCcc
Confidence            467899999999999999999999999999999999999999999876654