Psyllid ID: psy1866

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQLL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccHHHHHHccccccccccccccccHHHHHHHc
Coil and Loop (DISEMBL)
mmvltstpnneAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEwttnpamfqtplvspglpstnfltrslpsflgttpplvtslsspsvssnvplpsspppvestsqnfspgqspaevssplqltpvlddsQIAKLADIAQQLVRALphlepkaqnskkKICKDLEAVFQMSDEAVILKVKDnvhdsnleritnkkygrqll
Flexible Loop (DISEMBL)
mmvltstpnneAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPVLDDSQIAKLADIAQQLVRALPhlepkaqnskkkICKDLEAVFQMSDEAVILKVkdnvhdsnleritnkkygrqll
Low Complexity Region (SEG)
MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFlgttpplvtslsspsvssnvplpsspppvestsQNFSPGQSPAEVSSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQLL
Disordered region (IsUnstruct)
*************LQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSL**F***********************************************************IAKLADIAQQLVRAL************KICKDLEAVFQMSDEAVILKVKDNV******************
Disordered Region (DISOPRED)
*********NEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPL*****************************************************************************IAKLADI***********************************************SNLERITNKK*GRQ**
Disordered Region (DISEMBL)
MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLV***************************************PLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQLL
Disordered Region (DISPRO)
MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPL*T*******************************************PVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKY***LL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQLL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q59E55	625	NGFI-A-binding protein ho	yes	N/A	0.863	0.324	0.466	1e-47
Q13506	487	NGFI-A-binding protein 1	yes	N/A	0.634	0.305	0.532	4e-35
Q62722	485	NGFI-A-binding protein 1	yes	N/A	0.846	0.410	0.388	1e-34
O35589	485	NGFI-A-binding protein 1	N/A	N/A	0.855	0.414	0.387	4e-34
Q61122	486	NGFI-A-binding protein 1	yes	N/A	0.651	0.314	0.528	2e-33
Q61127	525	NGFI-A-binding protein 2	no	N/A	0.617	0.276	0.5	3e-33
Q15742	525	NGFI-A-binding protein 2	no	N/A	0.617	0.276	0.5	4e-33

>sp|Q59E55|NAB_DROME NGFI-A-binding protein homolog OS=Drosophila melanogaster GN=nab PE=1 SV=3

 Score =  189 bits (481), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 145/253 (57%), Gaps = 50/253 (19%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 107 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 166

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNF--L 99
           SKPLHVRRLQKAL EW  NP +FQ P++                    +P LP   F   
Sbjct: 167 SKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTTPALPRQKFPSF 226

Query: 100 TRSLPSFL----------------GTTPPLVTSLSSPSVSSNVPLP--------SSPPPV 135
             S  SF+                  T PL T +S PS  S             SSP P 
Sbjct: 227 NPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAPSVPLPLVLPPNPLTSSPHP- 285

Query: 136 ESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKI 194
            S + N  P  +  +VSS   QLTPVL ++QI ++   A ++ R LP  EP+AQ ++K+ 
Sbjct: 286 -SANSNL-PANTAHQVSSSSPQLTPVLTEAQIQRITMCADKIGRQLPQREPRAQTTRKRT 343

Query: 195 CKDLEAVFQMSDE 207
            ++LE V  M ++
Sbjct: 344 TRELEQVIAMGEQ 356

Transcriptional regulator that can both act as a coactivator or a corepressor depending on the context. Lacks DNA-binding domains and acts by associating with other transcription factors such as rotund (rn) and squeeze (sqz). Acts as a coactivator of sqz and is required to limit the number of neurons that express the LIM-homeodomain gene apterous and to specify Tv neuronal fate. Acts as corepressor of rn in wing development and is required to limit the expression of wingless (wg) in the wing hinge, where wg plays a mitogenic role.
Drosophila melanogaster (taxid: 7227)

>sp|Q13506|NAB1_HUMAN NGFI-A-binding protein 1 OS=Homo sapiens GN=NAB1 PE=1 SV=2

 Score =  148 bits (373), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 82/154 (53%), Positives = 100/154 (64%), Gaps = 5/154 (3%)

Query: 8   PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
           P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct: 6   PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query: 68  RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
           RRLQKAL++W TNP +F  PL S  LP ++     LP   G+   L  S SS   SSN  
Sbjct: 66  RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCSSYERSSNAR 121

Query: 128 LPS-SPPPVESTSQNFSPGQSPAEVSSPLQLTPV 160
            P    P   +T+   S GQ  ++V   L L  V
Sbjct: 122 EPHLKIPKCAATTCVQSLGQGKSDVVGSLALQSV 155

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2.

Homo sapiens (taxid: 9606)

>sp|Q62722|NAB1_RAT NGFI-A-binding protein 1 OS=Rattus norvegicus GN=Nab1 PE=2 SV=2

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/242 (38%), Positives = 130/242 (53%), Gaps = 43/242 (17%)

Query: 5   TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
           T+ P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3   TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query: 65  LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSS 124
           LHVRRLQKAL++W TNP +F  PL S  LP ++     LP   G+   L  S +S   SS
Sbjct: 63  LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCNSYERSS 118

Query: 125 NVPLPS-SPPPVESTSQNFSPGQSPAEV-------------------------------- 151
           +   P    P   +T+   S GQ  +EV                                
Sbjct: 119 SAREPHLKVPKCAATTCVQSLGQGKSEVGSLALQSVSESRLWQGHHTTESEHSLSPADLG 178

Query: 152 --SSPLQLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKICKDLEAVFQMS 205
             +SP + +  LD +    +A+  +++   LP  +     +   + KK+ K +  +F+MS
Sbjct: 179 SPASPKESSEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKNNKKLAKMIGHIFEMS 238

Query: 206 DE 207
           DE
Sbjct: 239 DE 240

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2. Also represses multiple types of non-EGR1 activation domains (in vitro).

Rattus norvegicus (taxid: 10116)

>sp|O35589|NAB1_MESAU NGFI-A-binding protein 1 OS=Mesocricetus auratus GN=NAB1 PE=2 SV=1

 Score =  144 bits (364), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/240 (38%), Positives = 131/240 (54%), Gaps = 39/240 (16%)

Query: 5   TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
           T+ P    ELQLYR++Q+A+LL+Y+   ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3   TALPRTLGELQLYRILQKANLLSYFGAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query: 65  LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNF----LTRSLPSFLGTTPPLVTSLSSP 120
           LHVRRLQKAL++W TNP +F  PL S  LP ++     L +  P++LG +       SS 
Sbjct: 63  LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPKGSPTWLGISCNSYERNSSA 120

Query: 121 SVSS-NVPLPSSPPPVESTSQNFSP----------------GQ---------SPAEVSSP 154
                 +P  ++   V+S  Q  S                 G          SPA+V SP
Sbjct: 121 REPHLKIPKCAATTCVQSLGQGKSEVGSLAVQSVSESRLWQGHHATESEHSLSPADVGSP 180

Query: 155 L---QLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKICKDLEAVFQMSDE 207
               + +  LD +    +A+  +++   LP  +     +   + KK+ K +  +F+MSDE
Sbjct: 181 ASPKESSEALDAAAALSVAECVERMASTLPKSDLNEVKELLKNNKKLAKMIGHIFEMSDE 240

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2.

Mesocricetus auratus (taxid: 10036)

>sp|Q61122|NAB1_MOUSE NGFI-A-binding protein 1 OS=Mus musculus GN=Nab1 PE=1 SV=2

 Score =  142 bits (358), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 104/159 (65%), Gaps = 6/159 (3%)

Query: 5   TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
           T+ P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 3   TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query: 65  LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSS 124
           LHVRRLQKAL++W TNP +F  PL S  LP ++     LP   G+   L  S +S   SS
Sbjct: 63  LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLPE--GSPTWLGISCNSYERSS 118

Query: 125 NVPLPS-SPPPVESTSQNFSPGQSPAEVSSPLQLTPVLD 162
           +   P    P   +T+   S GQ  +EV S L L  V D
Sbjct: 119 SSREPHLKIPKCAATTCVQSLGQGKSEVGS-LALQSVSD 156

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2.

Mus musculus (taxid: 10090)

>sp|Q61127|NAB2_MOUSE NGFI-A-binding protein 2 OS=Mus musculus GN=Nab2 PE=1 SV=2

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 17/162 (10%)

Query: 8   PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
           P    ELQLYRV+QRA+LL+YY+T ++ GGDDVQQLCEAGEEEFLEIMALVGMA+KPLHV
Sbjct: 37  PRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHV 96

Query: 68  RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
           RRLQKAL+EW TNP +F  P+  P +P +     S+P F       ++  +     S   
Sbjct: 97  RRLQKALREWATNPGLFSQPV--PAVPVS-----SIPLF------KISETAGTRKGSMSN 143

Query: 128 LPSSPPPVESTSQNFSPGQSPAEVS---SPLQLTPVLDDSQI 166
              SP     ++++FSP +SP E+    SPL   P   D +I
Sbjct: 144 GHGSPGEKAGSARSFSP-KSPLELGEKLSPLPGGPGAGDPRI 184

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2. Isoform 2 lacks repression ability.

Mus musculus (taxid: 10090)

>sp|Q15742|NAB2_HUMAN NGFI-A-binding protein 2 OS=Homo sapiens GN=NAB2 PE=1 SV=1

 Score =  141 bits (355), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/162 (50%), Positives = 104/162 (64%), Gaps = 17/162 (10%)

Query: 8   PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
           P    ELQLYRV+QRA+LL+YY+T ++ GGDDVQQLCEAGEEEFLEIMALVGMA+KPLHV
Sbjct: 37  PRTLGELQLYRVLQRANLLSYYETFIQQGGDDVQQLCEAGEEEFLEIMALVGMATKPLHV 96

Query: 68  RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSSNVP 127
           RRLQKAL+EW TNP +F  P+  P +P +     S+P F       ++  +     S   
Sbjct: 97  RRLQKALREWATNPGLFSQPV--PAVPVS-----SIPLF------KISETAGTRKGSMSN 143

Query: 128 LPSSPPPVESTSQNFSPGQSPAEVS---SPLQLTPVLDDSQI 166
              SP     ++++FSP +SP E+    SPL   P   D +I
Sbjct: 144 GHGSPGEKAGSARSFSP-KSPLELGEKLSPLPGGPGAGDPRI 184

Acts as a transcriptional repressor for zinc finger transcription factors EGR1 and EGR2. Isoform 2 lacks repression ability.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
328712871	611	PREDICTED: NGFI-A-binding protein homolo	0.863	0.332	0.555	6e-55
157126742	570	hypothetical protein AaeL_AAEL002112 [Ae	0.863	0.356	0.55	3e-53
347968609	628	AGAP002814-PA [Anopheles gambiae str. PE	0.876	0.328	0.517	3e-51
242023284	511	conserved hypothetical protein [Pediculu	0.791	0.363	0.530	8e-48
91076156	470	PREDICTED: similar to nab CG33545-PA [Tr	0.753	0.376	0.519	1e-47
194750817	649	GF23885 [Drosophila ananassae] gi|190625	0.842	0.305	0.457	2e-47
270014567	443	hypothetical protein TcasGA2_TC004602 [T	0.842	0.446	0.517	2e-47
209418020	599	LP22227p [Drosophila melanogaster]	0.863	0.338	0.466	4e-46
281365625	625	nab, isoform C [Drosophila melanogaster]	0.863	0.324	0.466	6e-46
442630138	554	nab, isoform D [Drosophila melanogaster]	0.863	0.366	0.466	7e-46

>gi|328712871|ref|XP_003244927.1| PREDICTED: NGFI-A-binding protein homolog [Acyrthosiphon pisum]

 Score =  219 bits (559), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 131/236 (55%), Positives = 157/236 (66%), Gaps = 33/236 (13%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M++TS+P+NEAELQLYRVMQRASLLAYYDTLLEMGGDD+QQLC+AGEEEFLEIMALVGMA
Sbjct: 54  MIMTSSPSNEAELQLYRVMQRASLLAYYDTLLEMGGDDLQQLCDAGEEEFLEIMALVGMA 113

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLVSP--GLPSTNFLTRSLPS--FLGTTP-PLV-T 115
           SKPLHVRRLQKAL EW +NP MFQ PL SP  G  S+  +    P   FL   P PL+ T
Sbjct: 114 SKPLHVRRLQKALHEWVSNPTMFQAPLTSPVAGGGSSAIVLPPNPVRPFLSVCPNPLIQT 173

Query: 116 SLSSPSVS-----------------SNVPLPSSPPPVESTS---QNF----SPGQSPAEV 151
           S+     +                 S   LP      E+T+   Q++    SPGQSP   
Sbjct: 174 SIHHGYYTPLGYGYQPPTSPSPVPSSTNQLPQVAQTSEATTSAGQHYGDSNSPGQSPG-- 231

Query: 152 SSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSDE 207
            SPLQL+P LD+SQI +LA  A+QLV+ LP  +PKAQ +K+K  K+LE V  M +E
Sbjct: 232 -SPLQLSPSLDESQITRLATSAKQLVQRLPQYQPKAQTAKRKANKELECVMNMPEE 286

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157126742|ref|XP_001654731.1| hypothetical protein AaeL_AAEL002112 [Aedes aegypti] gi|108882517|gb|EAT46742.1| AAEL002112-PA [Aedes aegypti]

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 152/220 (69%), Gaps = 17/220 (7%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           MV TSTP+NEAELQLYRV+QRASLL YYDTLLEMGGDD+QQLCEA EEEFLEIMALVGMA
Sbjct: 113 MVETSTPSNEAELQLYRVLQRASLLNYYDTLLEMGGDDLQQLCEACEEEFLEIMALVGMA 172

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPST-------NFLTRSLPSFLGTTPPLV 114
           SKPLHVRRLQKALQEW TNP+ FQ+PL S   PS          + RS+ S+   + P  
Sbjct: 173 SKPLHVRRLQKALQEWVTNPSAFQSPLTSMDTPSRLTYSPGPGSIARSVGSYPTASAPTS 232

Query: 115 TSLSSPSVSSNVPLPSSPPPVES------TSQNFSPGQSPAEVSSPLQLTPVLDDSQIAK 168
           + +++PS S+N+  PSS   + +      +S   SP  S    ++PLQL+P L + Q+ K
Sbjct: 233 SFIANPSSSTNLQ-PSSLGQLATSLTGSISSNVVSPIGS--TTANPLQLSPSLTEDQVIK 289

Query: 169 LADIAQQLVRALP-HLEPKAQNSKKKICKDLEAVFQMSDE 207
           +   A++L R +P HLEP+ QN KK+  +DLE V  MS+ 
Sbjct: 290 IIQAAERLSRTIPRHLEPRQQNVKKRTTRDLEQVIAMSEH 329

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347968609|ref|XP_312097.5| AGAP002814-PA [Anopheles gambiae str. PEST] gi|333467925|gb|EAA07728.6| AGAP002814-PA [Anopheles gambiae str. PEST]

 Score =  207 bits (527), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 117/226 (51%), Positives = 149/226 (65%), Gaps = 20/226 (8%)

Query: 1   MMVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGM 60
           +MV+TSTP+NEAELQLYRV+QRASLL YYDTLLEMGGDDVQQLC+AGEEEFLEIMALVGM
Sbjct: 152 IMVVTSTPSNEAELQLYRVLQRASLLNYYDTLLEMGGDDVQQLCDAGEEEFLEIMALVGM 211

Query: 61  ASKPLHVRRLQKALQEWTTNPAMFQTPLVSPGLPST-------NFLTRSLPS-----FLG 108
           ASKPLHVRRLQKAL EW TNP+ FQ+PL +  +PS          + RS+ +     + G
Sbjct: 212 ASKPLHVRRLQKALHEWMTNPSAFQSPLTNVDIPSRIPYSPEPGSIARSVSTASTGPYGG 271

Query: 109 --TTPPLVTSLSSPSVSSN------VPLPSSPPPVESTSQNFSPGQSPAEVSSPLQLTPV 160
             T     ++L++ +V+S            S P   S   +    Q  +  S  +QLTP 
Sbjct: 272 PSTVAGSFSNLTANAVASTNLPLTPPTPIPSAPASSSNLSSTISNQIGSTTSGSVQLTPS 331

Query: 161 LDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSD 206
           L + Q+AK+   A++L R LP LEP+ Q+ KK+  +DLEAV  MS+
Sbjct: 332 LTEDQVAKIVQAAERLSRTLPRLEPRQQSIKKRSARDLEAVIAMSE 377

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023284|ref|XP_002432065.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517427|gb|EEB19327.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 114/215 (53%), Positives = 137/215 (63%), Gaps = 29/215 (13%)

Query: 20  MQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT 79
           MQRASLLAYYDTLLEMGGDDVQQLC+AGEEEFLEIMALVGMASKPLHVRRLQKALQEW T
Sbjct: 1   MQRASLLAYYDTLLEMGGDDVQQLCDAGEEEFLEIMALVGMASKPLHVRRLQKALQEWIT 60

Query: 80  NPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPL--------VTSLSSPSVSSNVPLPSS 131
           NPAMFQTPL S  +P+TN +T  +   L +            +   S+P  + NV  P+ 
Sbjct: 61  NPAMFQTPLSSGLVPTTNNITHVVNRPLNSVVTNVTTTGTSAINLSSTPLNTQNVSNPTK 120

Query: 132 P--PPVESTSQNF---------------SPGQSPAEVS----SPLQLTPVLDDSQIAKLA 170
              P V S+  +F                P  SP  ++    SP    PVL + QI KL+
Sbjct: 121 EVVPVVVSSQDSFQVASEVNNQREAIIRGPSPSPTILNQPPGSPSNQNPVLSECQIIKLS 180

Query: 171 DIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMS 205
           + A+ LV+ LP  EPK QN+KKKIC++LE V +MS
Sbjct: 181 EAAEALVKTLPQFEPKPQNAKKKICRNLEKVMKMS 215

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076156|ref|XP_970832.1| PREDICTED: similar to nab CG33545-PA [Tribolium castaneum]

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/235 (51%), Positives = 138/235 (58%), Gaps = 58/235 (24%)

Query: 5   TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
           TS P N AELQLYRVMQ ASLL YYDTLLEMGGDDVQQLC+AGEEEFLEIM+LVGMASKP
Sbjct: 73  TSYPTNLAELQLYRVMQNASLLVYYDTLLEMGGDDVQQLCDAGEEEFLEIMSLVGMASKP 132

Query: 65  LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLPSFLGTTPPLVTSLSSPSVSS 124
           LHVRRLQK+LQEW TNPA F+ PLV    P  +F                  LSSP V+S
Sbjct: 133 LHVRRLQKSLQEWVTNPAKFKLPLV----PGEDF---------------EVELSSPRVTS 173

Query: 125 NVPLPSSPPPVES-----TSQNFSPGQSPA--EVSSP----------------------- 154
           N    S    V+S     T  + SPG   A   ++SP                       
Sbjct: 174 NHGFYS----VDSGDNCRTIYSPSPGDVCALPPIASPGLTLNKRPYSPLDPSCPPSSSSS 229

Query: 155 -----LQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQM 204
                 Q TP L DSQIAKLA  A++L + LP  EPKA N+KKK+CK+LE V  M
Sbjct: 230 PGSSMTQTTPTLVDSQIAKLAAAAERLSKHLPQFEPKAHNTKKKVCKELELVMSM 284

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194750817|ref|XP_001957726.1| GF23885 [Drosophila ananassae] gi|190625008|gb|EDV40532.1| GF23885 [Drosophila ananassae]

 Score =  195 bits (495), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 148/258 (57%), Gaps = 60/258 (23%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M+ TS P+NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 121 MITTSRPSNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 180

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNFLTR 101
           SKPLHVRRLQKAL EW  NP +FQ P++                    +P LP   F   
Sbjct: 181 SKPLHVRRLQKALHEWANNPGLFQGPMLPHLGLCETPPKPALVFNPDATPALPRQKF--- 237

Query: 102 SLPSF---------LGTTPP---------------LVTSLSSPSV--------SSNVPLP 129
             PSF            TP                ++T +S PS           + PL 
Sbjct: 238 --PSFNPAGSSFQHASVTPAPVLAPASVPASAPAAMITQISCPSAVPVPVPLVLPSTPLT 295

Query: 130 SSPPPVESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQ 188
           SSP P   T+ +  P  +  +VSS   QLTPVL + QI ++   A+++ R LPH EP+AQ
Sbjct: 296 SSPHP--PTNSSLPPVSTAHQVSSSSPQLTPVLTEMQIQRITQCAEKIARQLPHREPRAQ 353

Query: 189 NSKKKICKDLEAVFQMSD 206
            ++K+  ++LE V  M +
Sbjct: 354 TTRKRTTRELEQVIAMGE 371

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270014567|gb|EFA11015.1| hypothetical protein TcasGA2_TC004602 [Tribolium castaneum]

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 119/230 (51%), Positives = 142/230 (61%), Gaps = 32/230 (13%)

Query: 5   TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
           TS P N AELQLYRVMQ ASLL YYDTLLEMGGDDVQQLC+AGEEEFLEIM+LVGMASKP
Sbjct: 30  TSYPTNLAELQLYRVMQNASLLVYYDTLLEMGGDDVQQLCDAGEEEFLEIMSLVGMASKP 89

Query: 65  LHVRRLQKALQEWTTNPAMFQTPLV----------SPGLPSTNFL--------TRSL--- 103
           LHVRRLQK+LQEW TNPA F+ PLV          SP + S +           R++   
Sbjct: 90  LHVRRLQKSLQEWVTNPAKFKLPLVPGEDFEVELSSPRVTSNHGFYSVDSGDNCRTIYSP 149

Query: 104 -PSFLGTTPPLVT--------SLSSPSVSSNVPLPSSPPPVESTSQNFSPGQSPAEVSSP 154
            P  +   PP+ +         +S  S++ N  + S   P      +  P  S +  SS 
Sbjct: 150 SPGDVCALPPIASPGLTLNKRQISGSSIAPNHFVASR--PYSPLDPSCPPSSSSSPGSSM 207

Query: 155 LQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKICKDLEAVFQM 204
            Q TP L DSQIAKLA  A++L + LP  EPKA N+KKK+CK+LE V  M
Sbjct: 208 TQTTPTLVDSQIAKLAAAAERLSKHLPQFEPKAHNTKKKVCKELELVMSM 257

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|209418020|gb|ACI46548.1| LP22227p [Drosophila melanogaster]

 Score =  190 bits (483), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 145/253 (57%), Gaps = 50/253 (19%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 142 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 201

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNF--L 99
           SKPLHVRRLQKAL EW  NP +FQ P++                    +P LP   F   
Sbjct: 202 SKPLHVRRLQKALHEWANNPGLFQGPMIPHLGLCETPPKPALIFNPDTTPALPRQKFPSF 261

Query: 100 TRSLPSFL----------------GTTPPLVTSLSSPSVSSNVPLP--------SSPPPV 135
             S  SF+                  T PL T +S PS  S             SSP P 
Sbjct: 262 NPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAPSVPLPLVLPPNPLTSSPHP- 320

Query: 136 ESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKI 194
            S + N  P  +  +VSS   QLTPVL ++QI ++   A ++ R LP  EP+AQ ++K+ 
Sbjct: 321 -SANSNL-PANTAHQVSSSSPQLTPVLTEAQIQRITMCADKIGRQLPQREPRAQTTRKRT 378

Query: 195 CKDLEAVFQMSDE 207
            ++LE V  M ++
Sbjct: 379 TRELEQVIAMGEQ 391

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281365625|ref|NP_001014557.3| nab, isoform C [Drosophila melanogaster] gi|347595789|sp|Q59E55.3|NAB_DROME RecName: Full=NGFI-A-binding protein homolog; Short=dNAB gi|272455043|gb|AAX52730.3| nab, isoform C [Drosophila melanogaster]

 Score =  189 bits (481), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 145/253 (57%), Gaps = 50/253 (19%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 107 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 166

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNF--L 99
           SKPLHVRRLQKAL EW  NP +FQ P++                    +P LP   F   
Sbjct: 167 SKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTTPALPRQKFPSF 226

Query: 100 TRSLPSFL----------------GTTPPLVTSLSSPSVSSNVPLP--------SSPPPV 135
             S  SF+                  T PL T +S PS  S             SSP P 
Sbjct: 227 NPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAPSVPLPLVLPPNPLTSSPHP- 285

Query: 136 ESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKI 194
            S + N  P  +  +VSS   QLTPVL ++QI ++   A ++ R LP  EP+AQ ++K+ 
Sbjct: 286 -SANSNL-PANTAHQVSSSSPQLTPVLTEAQIQRITMCADKIGRQLPQREPRAQTTRKRT 343

Query: 195 CKDLEAVFQMSDE 207
            ++LE V  M ++
Sbjct: 344 TRELEQVIAMGEQ 356

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630138|ref|NP_001261407.1| nab, isoform D [Drosophila melanogaster] gi|440215291|gb|AGB94102.1| nab, isoform D [Drosophila melanogaster]

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 118/253 (46%), Positives = 145/253 (57%), Gaps = 50/253 (19%)

Query: 2   MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
           M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct: 107 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 166

Query: 62  SKPLHVRRLQKALQEWTTNPAMFQTPLV--------------------SPGLPSTNF--L 99
           SKPLHVRRLQKAL EW  NP +FQ P++                    +P LP   F   
Sbjct: 167 SKPLHVRRLQKALHEWANNPGLFQGPMMPHLGLCETPPKPALIFNPDTTPALPRQKFPSF 226

Query: 100 TRSLPSFL----------------GTTPPLVTSLSSPSVSSNVPLP--------SSPPPV 135
             S  SF+                  T PL T +S PS  S             SSP P 
Sbjct: 227 NPSGSSFMPSPVPPAPLPASASVPAPTVPLATQISCPSAPSVPLPLVLPPNPLTSSPHP- 285

Query: 136 ESTSQNFSPGQSPAEVSSPL-QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQNSKKKI 194
            S + N  P  +  +VSS   QLTPVL ++QI ++   A ++ R LP  EP+AQ ++K+ 
Sbjct: 286 -SANSNL-PANTAHQVSSSSPQLTPVLTEAQIQRITMCADKIGRQLPQREPRAQTTRKRT 343

Query: 195 CKDLEAVFQMSDE 207
            ++LE V  M ++
Sbjct: 344 TRELEQVIAMGEQ 356

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
FB|FBgn0259986	625	nab "nab" [Drosophila melanoga	0.374	0.140	0.818	3e-44
MGI|MGI:107564	486	Nab1 "Ngfi-A binding protein 1	0.417	0.201	0.65	3.5e-36
RGD|70882	485	Nab1 "Ngfi-A binding protein 1	0.417	0.202	0.65	3.5e-36
UNIPROTKB|Q62722	485	Nab1 "NGFI-A-binding protein 1	0.417	0.202	0.65	3.5e-36
UNIPROTKB|Q8QG58	499	NAB1 "Ngfi-A binding protein 1	0.417	0.196	0.64	5.4e-36
UNIPROTKB|A7MB61	487	NAB1 "Uncharacterized protein"	0.404	0.195	0.659	9.2e-36
UNIPROTKB|B8ZZS2	486	NAB1 "NGFI-A binding protein 1	0.404	0.195	0.659	5e-35
UNIPROTKB|F8W8J7	458	NAB1 "NGFI-A-binding protein 1	0.404	0.207	0.659	5e-35
UNIPROTKB|Q13506	487	NAB1 "NGFI-A-binding protein 1	0.404	0.195	0.659	5e-35
UNIPROTKB|E2RJE1	487	NAB1 "Uncharacterized protein"	0.404	0.195	0.659	1.3e-34

FB|FBgn0259986 nab "nab" [Drosophila melanogaster (taxid:7227)]

 Score = 375 (137.1 bits), Expect = 3.0e-44, Sum P(2) = 3.0e-44
 Identities = 72/88 (81%), Positives = 79/88 (89%)

Query:     2 MVLTSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMA 61
             M+ TS P NEAE+QLYRV+QRASLLAYYDTLLEMGGDDVQQL +AGEEEFLEIMALVGMA
Sbjct:   107 MITTSRPGNEAEVQLYRVLQRASLLAYYDTLLEMGGDDVQQLYDAGEEEFLEIMALVGMA 166

Query:    62 SKPLHVRRLQKALQEWTTNPAMFQTPLV 89
             SKPLHVRRLQKAL EW  NP +FQ P++
Sbjct:   167 SKPLHVRRLQKALHEWANNPGLFQGPMM 194

GO:0008134 "transcription factor binding" evidence=ISS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0007626 "locomotory behavior" evidence=IMP

GO:0003712 "transcription cofactor activity" evidence=IGI;IMP;IPI

GO:0035222 "wing disc pattern formation" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0014019 "neuroblast development" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

MGI|MGI:107564 Nab1 "Ngfi-A binding protein 1" [Mus musculus (taxid:10090)]

 Score = 340 (124.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 65/100 (65%), Positives = 79/100 (79%)

Query:     5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
             T+ P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct:     3 TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query:    65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             LHVRRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0001958 "endochondral ossification" evidence=IGI

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

GO:0008134 "transcription factor binding" evidence=IDA

GO:0014037 "Schwann cell differentiation" evidence=IGI

GO:0042552 "myelination" evidence=IGI

GO:0045682 "regulation of epidermis development" evidence=IGI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

RGD|70882 Nab1 "Ngfi-A binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 65/100 (65%), Positives = 79/100 (79%)

Query:     5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
             T+ P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct:     3 TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query:    65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             LHVRRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0001958 "endochondral ossification" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0014037 "Schwann cell differentiation" evidence=IEA;ISO

GO:0042552 "myelination" evidence=IEA;ISO

GO:0045682 "regulation of epidermis development" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q62722 Nab1 "NGFI-A-binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 340 (124.7 bits), Expect = 3.5e-36, Sum P(2) = 3.5e-36
 Identities = 65/100 (65%), Positives = 79/100 (79%)

Query:     5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
             T+ P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct:     3 TALPRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query:    65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             LHVRRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0001958 "endochondral ossification" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0014037 "Schwann cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0045682 "regulation of epidermis development" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q8QG58 NAB1 "Ngfi-A binding protein 1" [Gallus gallus (taxid:9031)]

 Score = 333 (122.3 bits), Expect = 5.4e-36, Sum P(2) = 5.4e-36
 Identities = 64/100 (64%), Positives = 78/100 (78%)

Query:     5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
             ++ P    ELQLYR++Q+A+LL Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct:     3 SALPRTLGELQLYRILQKANLLFYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKP 62

Query:    65 LHVRRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             LHVRRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    63 LHVRRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0014037 "Schwann cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0045682 "regulation of epidermis development" evidence=IEA

UNIPROTKB|A7MB61 NAB1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 64/97 (65%), Positives = 77/97 (79%)

Query:     8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
             P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct:     6 PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query:    68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             RRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0045682 "regulation of epidermis development" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0014037 "Schwann cell differentiation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B8ZZS2 NAB1 "NGFI-A binding protein 1 (EGR1 binding protein 1), isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 64/97 (65%), Positives = 77/97 (79%)

Query:     8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
             P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct:     6 PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query:    68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             RRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F8W8J7 NAB1 "NGFI-A-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 64/97 (65%), Positives = 77/97 (79%)

Query:     8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
             P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct:     6 PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query:    68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             RRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q13506 NAB1 "NGFI-A-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 335 (123.0 bits), Expect = 5.0e-35, Sum P(2) = 5.0e-35
 Identities = 64/97 (65%), Positives = 77/97 (79%)

Query:     8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
             P    ELQLYR++Q+A+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct:     6 PRTLGELQLYRILQKANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query:    68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             RRLQKAL++W TNP +F  PL S  LP ++     LP
Sbjct:    66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPIYKLP 100

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0001958 "endochondral ossification" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0014037 "Schwann cell differentiation" evidence=IEA

GO:0042552 "myelination" evidence=IEA

GO:0045682 "regulation of epidermis development" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

UNIPROTKB|E2RJE1 NAB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 336 (123.3 bits), Expect = 1.3e-34, Sum P(2) = 1.3e-34
 Identities = 64/97 (65%), Positives = 77/97 (79%)

Query:     8 PNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 67
             P    ELQLYR++QRA+LL+Y+D  ++ GGDDVQQLCEAGEEEFLEIMALVGMASKPLHV
Sbjct:     6 PRTLGELQLYRILQRANLLSYFDAFIQQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHV 65

Query:    68 RRLQKALQEWTTNPAMFQTPLVSPGLPSTNFLTRSLP 104
             RRLQKAL++W TNP +F  PL S  LP ++     +P
Sbjct:    66 RRLQKALRDWVTNPGLFNQPLTS--LPVSSIPVYKVP 100

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q61122	NAB1_MOUSE	No assigned EC number	0.5283	0.6510	0.3148	yes	N/A
Q13506	NAB1_HUMAN	No assigned EC number	0.5324	0.6340	0.3059	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	235
pfam04904	82	pfam04904, NCD1, NAB conserved region 1 (NCD1)	5e-47
pfam04905	166	pfam04905, NCD2, NAB conserved region 2 (NCD2)	1e-05

>gnl|CDD|147195 pfam04904, NCD1, NAB conserved region 1 (NCD1)

 Score =  150 bits (380), Expect = 5e-47
 Identities = 65/81 (80%), Positives = 68/81 (83%)

Query: 5  TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKP 64
            TP    ELQLYRV+QRA+LL YYDT +  GGDDVQQLCEAGEEEFLEIMALVGMASKP
Sbjct: 1  MPTPTTLGELQLYRVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKP 60

Query: 65 LHVRRLQKALQEWTTNPAMFQ 85
          LHVRRLQKALQEW TNP  FQ
Sbjct: 61 LHVRRLQKALQEWVTNPTAFQ 81

Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This region consists of the N-terminal NAB conserved region 1, which interacts with the EGR1 inhibitory domain (R1). It may also mediate multimerisation. Length = 82

>gnl|CDD|218320 pfam04905, NCD2, NAB conserved region 2 (NCD2)

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 15/73 (20%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 139 SQNFSPGQSPAEVSSPLQLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKI 194
              +       +  +P    P L  +Q++++ + A++  R LP L+    P+   + KK+
Sbjct: 16  GSPYGNDFGDFDSGNP-SENPTLSTAQVSRVVECAERASRTLPRLDLGEVPRLLKNNKKL 74

Query: 195 CKDLEAVFQMSDE 207
            K +  + +MS+ 
Sbjct: 75  AKMVGHILEMSEA 87

Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of transcription factors. This family consists of NAB conserved region 2, near the C-terminus of the protein. It is necessary for transcriptional repression by the Nab proteins. It is also required for transcription activation by Nab proteins at Nab-activated promoters. Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
KOG3835|consensus	495		100.0
PF04904	82	NCD1: NAB conserved region 1 (NCD1); InterPro: IPR	100.0
PF04905	164	NCD2: NAB conserved region 2 (NCD2); InterPro: IPR	99.86
PF00536	64	SAM_1: SAM domain (Sterile alpha motif); InterPro:	97.28
cd00166	63	SAM Sterile alpha motif.; Widespread domain in sig	96.31
smart00454	68	SAM Sterile alpha motif. Widespread domain in sign	95.43
PF07647	66	SAM_2: SAM domain (Sterile alpha motif); InterPro:	94.73
KOG4384|consensus	361		94.45
PRK10880	350	adenine DNA glycosylase; Provisional	90.53
PRK13910	289	DNA glycosylase MutY; Provisional	89.35
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	86.56
KOG3037|consensus	330		80.53

>KOG3835|consensus

Probab=100.00  E-value=1.3e-69  Score=506.40  Aligned_cols=220  Identities=36%  Similarity=0.536  Sum_probs=168.3

Q ss_pred             ccCCCChhhHHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCCCCc
Q psy1866           5 TSTPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMF   84 (235)
Q Consensus         5 ~~~p~~~~elqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p~~F   84 (235)
                      -++|+|+|||||||||||||||+|||+||+||||||||||+||||||||||+||||++||||||||||||+||++||++|
T Consensus         3 malPrTLgElQLyrVLqkANLlsYyd~FIqQGGDDvqQlceagEeEFLEIMaLVGMa~KPLHVRRlQkALrew~tnpglF   82 (495)
T KOG3835|consen    3 MALPRTLGELQLYRVLQKANLLSYYDVFIQQGGDDVQQLCEAGEEEFLEIMALVGMAPKPLHVRRLQKALREWSTNPGLF   82 (495)
T ss_pred             CCCccchHHHHHHHHHHHhhHHHHHHHHHHhcchHHHHHHHhhHHHHHHHHHHhccCCcchhHHHHHHHHHHHhcCcchh
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCC------------------CCCcccccCCCCCCCCCCCCCCC------cccCC------CCCCCCCCCCCCCCC
Q psy1866          85 QTPLVSP------------------GLPSTNFLTRSLPSFLGTTPPLV------TSLSS------PSVSSNVPLPSSPPP  134 (235)
Q Consensus        85 q~PL~s~------------------~~pc~~~~~~~~~~~~s~~p~~~------~s~s~------p~~s~~~~lP~~s~~  134 (235)
                      ++||..+                  |+||....+.+.    .|+++..      +.+++      ++.+++..+++...+
T Consensus        83 nqpl~~ipvssip~yk~~et~pt~lgl~~~s~~~s~~----~p~~~~~s~~s~~~~~v~tlge~~s~~~gs~s~~~~g~s  158 (495)
T KOG3835|consen   83 NQPLQQIPVSSIPNYKPAETDPTALGLPGISAATSPK----FPSLRFLSQLSSVAEKVSTLGEAASTSSGSPSNLNTGSS  158 (495)
T ss_pred             cCcccccCCCCCccccCCCCCcccccCccchhccCCC----CCchhhccccccccccccccccccCCCCCCcccCCCCCC
Confidence            9999865                  455544333322    1222221      11111      112222224433322


Q ss_pred             C-----C--CCCCCCCCCCCCCC-CCCC-----CCCCCCCCHHHHHH--HHHHHHHHHhhCCCCCchhh----hhhhhhH
Q psy1866         135 V-----E--STSQNFSPGQSPAE-VSSP-----LQLTPVLDDSQIAK--LADIAQQLVRALPHLEPKAQ----NSKKKIC  195 (235)
Q Consensus       135 ~-----~--sts~S~S~~~~~gs-~sSp-----~q~tp~L~~~qi~~--v~ecaeRL~~tLPq~dp~~~----~~nKKla  195 (235)
                      +     .  .+..+.|-.++.|| ++||     ++.+..++.++.-.  |.||||||++++|+.|.+++    |+|||++
T Consensus       159 r~wpg~~~~es~~~~s~~~d~gS~p~Sp~~~~~pets~a~~~aa~~ag~v~etverv~~a~P~~d~~ev~~llk~nkkLa  238 (495)
T KOG3835|consen  159 RSWPGAFKFESPLLESLASDQGSSPTSPVRSVLPETSSATSHAALPAGIVPETVERVSAAVPPPDSREVAVLLKNNKKLA  238 (495)
T ss_pred             cccccccccCCcccccchhhcCCCCCCCccccCCCCccccccccccccccHHHHHhhhccCCCCchhHHHHHHhhhHHhh
Confidence            2     1  11222221234443 5666     56677777777777  99999999999999999975    6999999


Q ss_pred             HhHHHHhcCCcccchhhhhhccccchhhhhhhh
Q psy1866         196 KDLEAVFQMSDEAVILKVKDNVHDSNLERITNK  228 (235)
Q Consensus       196 K~lehIf~Mse~DP~re~e~~~~~~~~~~~~~~  228 (235)
                      ++++|||+|.++||++|||||||+--.-|...|
T Consensus       239 ~s~ghifem~d~dp~keeeIrkyS~iyGRfdSk  271 (495)
T KOG3835|consen  239 FSGGHIFEMHDVDPPKEEEIRKYSTIYGRFDSK  271 (495)
T ss_pred             hcccceeeecCCCCchhhhhhcchhhhcccccc
Confidence            999999999999999999999999876665544

>PF04904 NCD1: NAB conserved region 1 (NCD1); InterPro: IPR006988 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []

Probab=100.00  E-value=2e-52  Score=319.59  Aligned_cols=81  Identities=81%  Similarity=1.240  Sum_probs=79.7

Q ss_pred             cCCCChhhHHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCCCCcc
Q psy1866           6 STPNNEAELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQ   85 (235)
Q Consensus         6 ~~p~~~~elqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p~~Fq   85 (235)
                      +.|+|+||||||+||||||||+|||+||++|||||||||+++|+||+|||+||||++||||||||||||+||++||++||
T Consensus         2 ~~p~~l~elqly~vLqrAnLl~Yyd~fi~~GgDDvqQL~~~~e~eF~eim~lvGM~sKPLHVrRlqKAL~ew~~~p~~Fq   81 (82)
T PF04904_consen    2 STPQTLGELQLYRVLQRANLLQYYDTFIAQGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWSTNPHAFQ   81 (82)
T ss_pred             CCCCcHHHHHHHHHHHHhhHHHHHHHHHHHcChhHHHHHhcChHHHHHHHHHhCccCccHHHHHHHHHHHHHhcChhhhc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             c
Q psy1866          86 T   86 (235)
Q Consensus        86 ~   86 (235)
                      .
T Consensus        82 ~   82 (82)
T PF04904_consen   82 D   82 (82)
T ss_pred             C
Confidence            4

This entry represents the N-terminal NAB domain, which interacts with the EGR1 inhibitory domain (R1) []. It may also mediate multimerisation.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

>PF04905 NCD2: NAB conserved region 2 (NCD2); InterPro: IPR006989 Nab1 and Nab2 are co-repressors that specifically interact with and repress transcription mediated by the three members of the NGFI-A (Egr-1, Krox24, zif/268) family of eukaryotic (metazoa) transcription factors []

Probab=99.86  E-value=1.5e-22  Score=171.48  Aligned_cols=80  Identities=35%  Similarity=0.555  Sum_probs=53.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhhCCCCC----chhhhhhhhhHHhHHHHhcCCcccchhhhhhccccchhhhhhhhh-
Q psy1866         155 LQLTPVLDDSQIAKLADIAQQLVRALPHLE----PKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKK-  229 (235)
Q Consensus       155 ~q~tp~L~~~qi~~v~ecaeRL~~tLPq~d----p~~~~~nKKlaK~lehIf~Mse~DP~re~e~~~~~~~~~~~~~~~-  229 (235)
                      .+.+|+||++||++|++|||||+++||++|    ++.+++|||++|+|+|||+|+++||+|++|||||+.-.-|..-|+ 
T Consensus        29 s~~~~~L~~~~v~~l~e~~erl~k~lP~~~~~e~~~~~~~kKK~~k~l~~v~~M~~~dp~r~eEiRkySaIygrfDskRr  108 (164)
T PF04905_consen   29 SSPTPVLDEEQVQKLAECVERLIKTLPRFDLSEVPKLLNTKKKLAKELEHVLEMSEDDPRREEEIRKYSAIYGRFDSKRR  108 (164)
T ss_dssp             ------S-HHHHHHHHHHHHHHHHHS----HHHHHHHHHH-SHHHHHHTHHHHS-SS-HHHHHHHHHH--SSS-S---TT
T ss_pred             ccccccCCHHHHHHHHHHHHHHHHhCCCCchhhhHHHHHhhhHHHHHHHHHHcCCCCChHHHHHHHHHHHHhCccccCCC
Confidence            344599999999999999999999999999    889999999999999999999999999999999998777654443 


Q ss_pred             hhccc
Q psy1866         230 YGRQL  234 (235)
Q Consensus       230 ~~~~~  234 (235)
                      -|++|
T Consensus       109 ~~k~L  113 (164)
T PF04905_consen  109 PGKPL  113 (164)
T ss_dssp             ---S-
T ss_pred             CCCCc
Confidence            35544

This entry represents a NAB domain near the C terminus of the protein. It is necessary for transcriptional repression by the Nab proteins []. It is also required for transcription activation by Nab proteins at Nab-activated promoters [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2YUF_A.

>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=97.28  E-value=0.0013  Score=45.51  Aligned_cols=59  Identities=22%  Similarity=0.293  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          13 ELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        13 elqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      .-++...|+.-+|-+|.+.| ..|-.|.+.|+...++++.+    +|+ .++-|-+||.++++++
T Consensus         5 ~~~V~~WL~~~~l~~y~~~F-~~~~i~g~~L~~lt~~dL~~----lgi-~~~ghr~ki~~~i~~L   63 (64)
T PF00536_consen    5 VEDVSEWLKSLGLEQYAENF-EKNYIDGEDLLSLTEEDLEE----LGI-TKLGHRKKILRAIQKL   63 (64)
T ss_dssp             HHHHHHHHHHTTGGGGHHHH-HHTTSSHHHHTTSCHHHHHH----TT--SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHH-HcCCchHHHHHhcCHHHHHH----cCC-CCHHHHHHHHHHHHHh
Confidence            45788899999999999999 99999999999999999776    455 4679999999999986

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....

>cd00166 SAM Sterile alpha motif

Probab=96.31  E-value=0.024  Score=37.76  Aligned_cols=57  Identities=26%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      ++...|++.++-.|.+.|.+.|= |.+.|+...++++.    -+|+ .+|-|.+|+.+++.+.
T Consensus         6 ~V~~wL~~~~~~~y~~~f~~~~i-~g~~L~~l~~~dL~----~lgi-~~~g~r~~i~~~i~~l   62 (63)
T cd00166           6 DVAEWLESLGLGQYADNFRENGI-DGDLLLLLTEEDLK----ELGI-TLPGHRKKILKAIQKL   62 (63)
T ss_pred             HHHHHHHHcChHHHHHHHHHcCC-CHHHHhHCCHHHHH----HcCC-CCHHHHHHHHHHHHHc
Confidence            56678999999999999999988 89999999988865    4576 4589999999999864

; Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerization.

>smart00454 SAM Sterile alpha motif

Probab=95.43  E-value=0.12  Score=34.58  Aligned_cols=61  Identities=23%  Similarity=0.291  Sum_probs=45.3

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          14 LQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        14 lqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      -++...|+.-++-+|-+.|.+.|=|-...+....++++    +-+|+ .+|.|-+||.+++.+...
T Consensus         7 ~~v~~wL~~~g~~~y~~~f~~~~i~g~~ll~~~~~~~l----~~lgi-~~~~~r~~ll~~i~~l~~   67 (68)
T smart00454        7 ESVADWLESIGLEQYADNFRKNGIDGALLLLLTSEEDL----KELGI-TKLGHRKKILKAIQKLKD   67 (68)
T ss_pred             HHHHHHHHHCChHHHHHHHHHCCCCHHHHHhcChHHHH----HHcCC-CcHHHHHHHHHHHHHHHh
Confidence            35667899999999999999987655554443334443    33787 569999999999998754

Widespread domain in signalling and nuclear proteins. In EPH-related tyrosine kinases, appears to mediate cell-cell initiated signal transduction via the binding of SH2-containing proteins to a conserved tyrosine that is phosphorylated. In many cases mediates homodimerisation.

>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes

Probab=94.73  E-value=0.13  Score=35.46  Aligned_cols=58  Identities=28%  Similarity=0.375  Sum_probs=48.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      ++-..|.+.+|-+|.+.|.++|=|.+..|....++++.    -.|+. ++-|.+||.+++++-
T Consensus         8 ~v~~WL~~~gl~~y~~~f~~~~i~g~~~L~~l~~~~L~----~lGI~-~~~~r~kll~~i~~L   65 (66)
T PF07647_consen    8 DVAEWLKSLGLEQYADNFRENGIDGLEDLLQLTEEDLK----ELGIT-NLGHRRKLLSAIQEL   65 (66)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHTTCSHHHHHTTSCHHHHH----HTTTT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHHcCCcHHHHHhhCCHHHHH----HcCCC-CHHHHHHHHHHHHHc
Confidence            45567889999999999999999999999999888773    45663 577999999999863

The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....

>KOG4384|consensus

Probab=94.45  E-value=0.13  Score=49.26  Aligned_cols=67  Identities=27%  Similarity=0.354  Sum_probs=58.4

Q ss_pred             HHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCCCCccccC
Q psy1866          17 YRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPL   88 (235)
Q Consensus        17 y~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p~~Fq~PL   88 (235)
                      -..|++-||-.|..+|+++|=||++-+-+..|+++.||    |+ .+|=|-++|-.|++-|+.-+..|-++.
T Consensus       219 ~ewL~~i~le~y~~~~L~nGYd~le~~k~i~e~dL~~l----gI-~nP~Hr~kLL~av~~~~e~d~~~~~~~  285 (361)
T KOG4384|consen  219 EEWLRRIGLEEYIETLLENGYDTLEDLKDITEEDLEEL----GI-DNPDHRKKLLSAVELLKEIDSGSEQVG  285 (361)
T ss_pred             HHHHHHhhHHHHHHHHHHcchHHHHHHHhccHHHHHHh----CC-CCHHHHHHHHHHHHHHHhccccccccC
Confidence            34599999999999999999999999999999998875    54 589999999999999998777765443

>PRK10880 adenine DNA glycosylase; Provisional

Probab=90.53  E-value=0.32  Score=45.73  Aligned_cols=56  Identities=27%  Similarity=0.388  Sum_probs=47.9

Q ss_pred             HhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          21 QRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        21 qrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      +-++...||+.|++. .-|++.|++++++|.+++..=+|..+|   .|+|+++.+.++..
T Consensus        44 ~v~~v~~~~~rl~~~-fPt~~~La~a~~eel~~~~~glGyy~R---Ar~L~~~A~~i~~~   99 (350)
T PRK10880         44 QVATVIPYFERFMAR-FPTVTDLANAPLDEVLHLWTGLGYYAR---ARNLHKAAQQVATL   99 (350)
T ss_pred             cHHHHHHHHHHHHHH-CcCHHHHHCcCHHHHHHHHHcCChHHH---HHHHHHHHHHHHHH
Confidence            346778899999996 568999999999999999999999865   88888888877654

>PRK13910 DNA glycosylase MutY; Provisional

Probab=89.35  E-value=0.46  Score=43.61  Aligned_cols=49  Identities=24%  Similarity=0.332  Sum_probs=42.6

Q ss_pred             HHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          27 AYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        27 ~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      .||+.|++.-. |++.|++++++|++++..=+|.-+|   .|+|+++.+..+.
T Consensus        13 ~yy~rf~~~fP-t~e~La~a~~~el~~~~~glGyy~R---Ar~L~~~A~~i~~   61 (289)
T PRK13910         13 RFYSPFLEAFP-TLKDLANAPLEEVLLLWRGLGYYSR---AKNLKKSAEICVK   61 (289)
T ss_pred             HHHHHHHHHCC-CHHHHHCCCHHHHHHHHHcCCcHHH---HHHHHHHHHHHHH
Confidence            49999999877 5999999999999999999999876   7888887776654

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=86.56  E-value=1.2  Score=40.34  Aligned_cols=55  Identities=31%  Similarity=0.462  Sum_probs=46.4

Q ss_pred             hhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          22 RASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        22 rAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      -++...||+.|++. --+++.|++++++|+++++.=+|+.+|   .|+|+++.+....+
T Consensus        41 v~~v~~~~~rl~~~-fpt~~~La~a~~eeL~~~~~~lG~y~R---Ar~L~~~A~~i~~~   95 (275)
T TIGR01084        41 VATVIPYFERFLER-FPTVQALANAPQDEVLKLWEGLGYYAR---ARNLHKAAQEVVEE   95 (275)
T ss_pred             HHHHHHHHHHHHHh-CCCHHHHHCcCHHHHHHHHHHCCcHHH---HHHHHHHHHHHHHH
Confidence            35667899999986 578999999999999999999999876   78888887766553

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>KOG3037|consensus

Probab=80.53  E-value=4.7  Score=38.62  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHH---HHHHHhhCCCCCchh
Q psy1866         151 VSSPLQLTPVLDDSQIAKLADI---AQQLVRALPHLEPKA  187 (235)
Q Consensus       151 ~sSp~q~tp~L~~~qi~~v~ec---aeRL~~tLPq~dp~~  187 (235)
                      +.+...+..+|.++.|..|..|   .|||+.+||..+++.
T Consensus       219 g~~~vdLa~vL~~e~v~~vl~~~~v~erL~phlP~d~~~~  258 (330)
T KOG3037|consen  219 GASTVDLATVLKPEAVAPVLANPGVQERLMPHLPSDHDRA  258 (330)
T ss_pred             CccceehhhhcChHHHHHHhhCcchhhhhcccCCCCCcch
Confidence            3446789999999999999998   899999999988874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
2yuf_A	142	NGFI-A-binding protein 1; transcriptional represso	6e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 52.1 bits (124), Expect = 6e-09
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 152 SSPLQLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQ----NSKKKICKDLEAVFQMSDE 207
            S       LD +    +A+  +++   LP  +         + KK+ K +  +F+M+D+
Sbjct: 1   GSSGSSGEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDD 60

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 39/248 (15%), Positives = 80/248 (32%), Gaps = 68/248 (27%)

Query: 30  DTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPAMFQTPLV 89
           +T+LEM    +Q+L    +  +         ++  L +  +Q  L+            L 
Sbjct: 196 ETVLEM----LQKLLYQIDPNWTS--RSDHSSNIKLRIHSIQAELRRL----------LK 239

Query: 90  SPGLPSTNFL--------TRSLPSFLGTTPPLVTSLSSPSVSSNVPLPSSPPPVESTSQN 141
           S      N L         ++  +F  +   L+T+             ++   ++  S  
Sbjct: 240 SKPYE--NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 142 FSPGQS---------------PAEVS--SPLQLTPV-------------LDDSQIAKLAD 171
            +P +                P EV   +P +L+ +                    KL  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 172 IAQQLVRALPHLEPKAQNSKKKICKDLEAVFQMSD----EAVILKVKDNVHDSNLERITN 227
           I +    +L  LEP      +K+   L +VF          ++  +  +V  S++  + N
Sbjct: 358 IIE---SSLNVLEP---AEYRKMFDRL-SVFP-PSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 228 KKYGRQLL 235
           K +   L+
Sbjct: 410 KLHKYSLV 417

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
2yuf_A	142	NGFI-A-binding protein 1; transcriptional represso	99.86
1ucv_A	81	Ephrin type-A receptor 8; receptor oligomerization	97.31
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	97.29
1b4f_A	82	EPHB2; SAM domain, EPH receptor, signal transducti	97.21
1x40_A	91	ARAP2; ASAP-related protein2, GTPase activity, sig	97.19
2dl0_A	97	SAM and SH3 domain-containing protein 1; cell-free	97.15
2k4p_A	86	Phosphatidylinositol-3,4,5-trisphosphate 5- phosph	97.12
2kso_A	82	Ephrin type-A receptor 2; SAM domain, heterodimer,	97.1
2eao_A	99	Ephrin type-B receptor 1; cell-free protein synthe	97.09
2e8n_A	88	Ephrin type-A receptor 2; cell-free protein synthe	97.03
1b0x_A	94	Protein (EPHA4 receptor tyrosine kinase); protein	96.93
2kg5_A	100	ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-	96.89
2eam_A	80	Putative 47 kDa protein; cell-free protein synthes	96.87
2qkq_A	83	Ephrin type-B receptor 4; ATP-binding, glycoprotei	96.81
2lmr_A	101	ODIN, ankyrin repeat and SAM domain-containing pro	96.62
3h8m_A	90	Ephrin type-A receptor 7; SAM domain, kinase,struc	96.16
3kka_C	86	Ephrin type-A receptor 2; ATP-binding, kinase, nuc	96.07
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	95.89
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	95.68
3hil_A	82	Ephrin type-A receptor 1; ATP-binding, kinase, nuc	95.66
2kiv_A	148	Ankyrin repeat and sterIle alpha motif domain- con	95.54
2ke7_A	103	Ankyrin repeat and sterIle alpha motif domain- con	95.49
3sei_A	149	Caskin-1; SAM domain, protein-protein interaction,	95.29
3bq7_A	81	Diacylglycerol kinase delta; SAM domain, polymeriz	95.22
3k1r_B	74	Usher syndrome type-1G protein; protein-protein co	94.69
2gle_A	74	Neurabin-1; SAM domain, scaffold, protein protein	93.26
2f3n_A	76	SH3 and multiple ankyrin repeat domains 3; postsyn	93.2
2ean_A	83	Connector enhancer of kinase suppressor of RAS 2;	92.5
3bs7_A	78	Protein aveugle; sterIle alpha motif (SAM) domain,	92.08
1v85_A	91	Similar to ring finger protein 36; apoptosis, neur	90.87
1ow5_A	85	Serine/threonine-protein kinase STE11; MAP kinase,	90.61
3bs5_B	80	Connector enhancer of kinase suppressor of RAS 2;	90.45
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	89.27
3bs5_A	106	Protein aveugle; sterIle alpha motif, SAM domain,	88.51
2d8c_A	97	Phosphatidylcholine:ceramide cholinephosphotransfe	83.02
2dkz_A	84	Hypothetical protein LOC64762; cell-free protein s	82.95
3tad_C	265	Liprin-beta-1; protein binding; 2.90A {Mus musculu	82.16
2e8o_A	103	SAM domain and HD domain-containing protein 1; cel	80.62

>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.1e-22  Score=167.56  Aligned_cols=72  Identities=17%  Similarity=0.258  Sum_probs=65.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhhCCCCCchhh----hhhhhhHHhHHHHhcCCcccchhhhhhccccchhhhhhh
Q psy1866         156 QLTPVLDDSQIAKLADIAQQLVRALPHLEPKAQ----NSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITN  227 (235)
Q Consensus       156 q~tp~L~~~qi~~v~ecaeRL~~tLPq~dp~~~----~~nKKlaK~lehIf~Mse~DP~re~e~~~~~~~~~~~~~  227 (235)
                      ..+++||++||++|+||||||+++||++||+++    ++|||+||+|+|||+|+++||+|++|||||+--.-|..-
T Consensus         5 ~~~e~L~~~~v~~v~e~~erl~~tlP~~dp~e~~~~l~~~Kkl~k~l~~i~~m~~~dp~r~~EiRKYSaIYGRFDs   80 (142)
T 2yuf_A            5 SSGEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNKKLAKMIGHIFEMNDDDPHKEEEIRKYSAIYGRFDS   80 (142)
T ss_dssp             CCCCCSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHCSHHHHHHTHHHHSCSSCHHHHHHHHHHCCSSSCSCC
T ss_pred             CcccccCHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHhHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHccccc
Confidence            456799999999999999999999999999975    799999999999999999999999999999976555443

>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=97.31  E-value=0.00068  Score=49.25  Aligned_cols=61  Identities=10%  Similarity=0.144  Sum_probs=52.8

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCC
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNP   81 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p   81 (235)
                      +-..|..-+|-+|.+.|++.|=|+.+.|+.+.++|+.+    +|+. ++=|.+|+.+|+++.....
T Consensus        10 V~~WL~~lgL~~Y~~~F~~~~~d~~~~l~~lt~~DL~~----lGI~-~~GhrkkIl~ai~~l~~~~   70 (81)
T 1ucv_A           10 VGDWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA----LGIT-LMGHQKKILGSIQTMRAQL   70 (81)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCChHHHHHHcCHHHHHh----CCCC-ChhHHHHHHHHHHHHHHHH
Confidence            45579999999999999999999999999999999876    5764 5789999999999876443

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=97.29  E-value=0.0007  Score=49.19  Aligned_cols=58  Identities=28%  Similarity=0.427  Sum_probs=51.0

Q ss_pred             HHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCC
Q psy1866          19 VMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNP   81 (235)
Q Consensus        19 vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p   81 (235)
                      .|...+|-+|.+.|++.|=||++.++...++++.+    +|+. +|=|-+|+.+|++.+....
T Consensus        18 WL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~----lGI~-~~ghrkkil~ai~~L~~~~   75 (78)
T 1v38_A           18 FLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIE----LNIA-DPEDRARLLSAAESLLSGP   75 (78)
T ss_dssp             HHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHH----TTTC-CHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHH----cCCC-CHHHHHHHHHHHHHHHhcc
Confidence            69999999999999999999999999999999776    5764 5889999999999876543

>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A

Probab=97.21  E-value=0.00085  Score=48.50  Aligned_cols=60  Identities=13%  Similarity=0.233  Sum_probs=52.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      .+...|+.-+|-+|.+.|++.|=||.+.|+...++++.+    +|+. ++-|-+|+.+|+++...
T Consensus        13 ~v~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~----lGI~-~~GhrkkIl~ai~~l~~   72 (82)
T 1b4f_A           13 TVDEWLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILR----VGVT-LAGHQKKILNSIQVMRA   72 (82)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----TTCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHH----cCCC-CHHHHHHHHHHHHHHHH
Confidence            455689999999999999999999999999999999875    6764 57899999999988753

>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2

Probab=97.19  E-value=0.00068  Score=50.53  Aligned_cols=60  Identities=20%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      .+...|..-+|-+|-+.|++.|=||++.|+...++|+.+    +|.. ++=|.+|+.+|++++..
T Consensus        17 ~V~~WL~~lgL~qY~~~F~~~g~~~~~~l~~lt~~DL~~----lGI~-~~GHrkkIl~ai~~L~~   76 (91)
T 1x40_A           17 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQK----IGIS-PTGHRRRILKQLQIILS   76 (91)
T ss_dssp             BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHH----HTCC-CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhcCHHHHHH----CCCC-CHhHHHHHHHHHHHHHh
Confidence            355679999999999999999999999999999999776    4664 57899999999887763

>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.15  E-value=0.00038  Score=52.99  Aligned_cols=60  Identities=20%  Similarity=0.232  Sum_probs=52.7

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      +...|..-+|-+|.+.|++.|=|+++.|+...++|+.+|    |+. ++=|.+|+.+++++....
T Consensus        26 V~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~l----GIt-~~gHrkkIl~ai~~lr~~   85 (97)
T 2dl0_A           26 VSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEA----GIT-EERHIRKLLSAARLFKLP   85 (97)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHH----TCC-CHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHC----CCC-CHHHHHHHHHHHHHHHcc
Confidence            556899999999999999999999999999999998765    664 588999999999987644

>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B

Probab=97.12  E-value=0.00083  Score=50.28  Aligned_cols=57  Identities=30%  Similarity=0.403  Sum_probs=49.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      +...|..-+|-+|-+.|++.|=||+++|++..++|+.+    +|.. ++=|-+|+.+|+++.
T Consensus        29 V~eWL~~lgL~qY~~~F~~~g~~~le~l~~lt~~DL~~----lGIt-~~GHRkkIL~aI~~L   85 (86)
T 2k4p_A           29 MSAWLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEE----AGVQ-DPAHKRLLLDTLQLS   85 (86)
T ss_dssp             SHHHHHTTTCGGGHHHHHTTTCCCHHHHTTCCHHHHHH----TTCC-CHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHH----CCCC-CHHHHHHHHHHHHHc
Confidence            33459999999999999999999999999999999875    5654 688999999999863

>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}

Probab=97.10  E-value=0.00086  Score=49.25  Aligned_cols=62  Identities=11%  Similarity=0.327  Sum_probs=52.0

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          13 ELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        13 elqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      --++...|..-+|-+|.+.|++.|=|+.++|+.+.++|+.+    +|+ +++-|.+|+.+|++....
T Consensus        16 ~~~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~lt~~DL~~----lGI-~~~GhRkkIl~ai~~Lr~   77 (82)
T 2kso_A           16 HMTVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKR----IGV-RLPGHQKRIAYSLLGLKD   77 (82)
T ss_dssp             --CHHHHHHHTTCTTHHHHHHHTTCCSHHHHTTCCHHHHHH----HHC-CCTTHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHH----CCC-CChhHHHHHHHHHHHHHH
Confidence            33566789999999999999999999999999999999865    465 457899999999987653

>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.09  E-value=0.00089  Score=50.39  Aligned_cols=62  Identities=15%  Similarity=0.320  Sum_probs=54.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCC
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNP   81 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p   81 (235)
                      .+...|+.-+|-+|.+.|++.|=||.+.|+...++++.+    +|+. ++=|-+|+.+|++++....
T Consensus        24 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~L~~lt~~DL~~----lGI~-~~GhRkkIl~ai~~l~~~~   85 (99)
T 2eao_A           24 TVDDWLSAIKMVQYRDSFLTAGFTSLQLVTQMTSEDLLR----IGIT-LAGHQKKILNSIHSMRVQI   85 (99)
T ss_dssp             BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHCCcHHHHHHHHHcCCChHHHHhhCCHHHHHH----CCCC-ChhHHHHHHHHHHHHHHHh
Confidence            566789999999999999999999999999999999876    5764 5789999999999987554

>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.03  E-value=0.0012  Score=48.70  Aligned_cols=61  Identities=11%  Similarity=0.311  Sum_probs=52.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      .+...|+.-+|-+|.+.|++.|=|++++|+...++++.+    +|+. ++=|-+|+.+|+++....
T Consensus        14 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~----lGI~-~~GhRkkIl~ai~~l~~~   74 (88)
T 2e8n_A           14 TVSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDVKR----IGVR-LPGHQKRIAYSLLGLKDQ   74 (88)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHHTCSSHHHHTTSCTTHHHH----TTCC-SHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCChHHHHHhCCHHHHHH----CCCC-ChhHHHHHHHHHHHHHHh
Confidence            456689999999999999999999999999999999765    5754 578999999999988754

>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2

Probab=96.93  E-value=0.0022  Score=47.84  Aligned_cols=59  Identities=12%  Similarity=0.268  Sum_probs=50.9

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      .+...|..-+|-+|.+.|++.|=||+++|+...++++.+    +|+ .++=|-+|+.+|+++..
T Consensus        28 ~V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~lt~~DL~~----lGI-~~~GhrkkIl~ai~~L~   86 (94)
T 1b0x_A           28 SVGDWLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLAR----IGI-TAITHQNKILSSVQAMR   86 (94)
T ss_dssp             CHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----HTC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCcHHHHHHHHHcCCCCHHHHhhCCHHHHHH----CCC-CChhHHHHHHHHHHHHH
Confidence            455689999999999999999999999999999999765    575 45789999999988764

>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}

Probab=96.89  E-value=0.0025  Score=48.71  Aligned_cols=62  Identities=23%  Similarity=0.264  Sum_probs=54.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCC
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNP   81 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p   81 (235)
                      ++...|...+|-+|.+.|++.|=|+.+.|+.+.++++.+    +|+. ++=|-+|+.+|++.....+
T Consensus        28 ~V~~WL~~lgL~qY~~~F~~~gid~~~~L~~Lt~eDLke----LGIt-~~GhRkkIL~aI~~Lr~~~   89 (100)
T 2kg5_A           28 DIAVWLATVHLEQYADTFRRHGLATAGAARGLGHEELKQ----LGIS-ATGHRKRILRLLQTGTEEG   89 (100)
T ss_dssp             BHHHHHGGGTCGGGHHHHHHTTCCBHHHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHTTTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCChHHHHHhcCHHHHHH----CCCC-ChhHHHHHHHHHHHHHhcc
Confidence            567789999999999999999999999999999999776    5765 5789999999999876543

>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.87  E-value=0.00084  Score=48.43  Aligned_cols=62  Identities=24%  Similarity=0.408  Sum_probs=53.4

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHH--HhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCCC
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQL--CEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPA   82 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql--~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p~   82 (235)
                      +...|+.-+|-+|.+.|++.|=|+.+.|  +...++++.+    +|+. ++-|-+|+.+|++++...|.
T Consensus        15 V~~WL~~lgL~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~----lGI~-~~ghR~kIl~ai~~L~~~~~   78 (80)
T 2eam_A           15 VGQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE----IGIL-NSGHRQRILQAIQLLPSGPS   78 (80)
T ss_dssp             HHHHHHHHTCGGGHHHHHHTTCCCTTTSSSSSSCTTHHHH----SSCC-CHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHH----CCCC-CHHHHHHHHHHHHHHhcCCC
Confidence            4457999999999999999999999999  7999999776    5765 58899999999999877664

>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}

Probab=96.81  E-value=0.002  Score=46.72  Aligned_cols=59  Identities=12%  Similarity=0.259  Sum_probs=51.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      .+...|+.-+|-+|.+.|++.|=+|.++|+...++++.+    +|+. ++-|-+|+.+|+++..
T Consensus        17 ~V~~WL~~lgL~~Y~~~F~~~~~~~~~~l~~lt~~dL~~----lGI~-~~GhrkkIl~ai~~l~   75 (83)
T 2qkq_A           17 SVGEWLRAIKMGRYEESFAAAGFGSFELVSQISAEDLLR----IGVT-LAGHQKKILASVQHMK   75 (83)
T ss_dssp             SHHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHTTC-
T ss_pred             hHHHHHHHCCCHHHHHHHHHcCCCcHHHHhhCCHHHHHH----CCCC-CHHHHHHHHHHHHHHH
Confidence            456689999999999999999889999999999999877    5874 5889999999988754

>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}

Probab=96.62  E-value=0.002  Score=49.52  Aligned_cols=61  Identities=26%  Similarity=0.367  Sum_probs=51.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHH--hhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCC
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLC--EAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNP   81 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~--~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p   81 (235)
                      +...|..-+|-+|.+.|++.|=|+++.|+  ...++++.+    +|.. ++=|-+|+.+|++.+...+
T Consensus        32 V~eWL~~LgL~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~e----LGIt-~~GHRkkIL~aI~~L~~~~   94 (101)
T 2lmr_A           32 VGEWLESIGLQQYESKLLLNGFDDVHFLGSNVMEEQDLRD----IGIS-DPQHRRKLLQAARSLPKVK   94 (101)
T ss_dssp             HHHHHHHHTCGGGHHHHHHTTCCCTTSTTTSCCCHHHHHH----HTCC-CHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCChHHHHhhccCCHHHHHH----CCCC-CHHHHHHHHHHHHHHHhcc
Confidence            34459999999999999999999999998  799998655    5764 6889999999999876554

>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}

Probab=96.16  E-value=0.013  Score=43.97  Aligned_cols=58  Identities=14%  Similarity=0.272  Sum_probs=50.3

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      +...|..-+|-+|.+.|.+.|=|++++|....++|+.+    +|.. +|=|-+|+-+|++++.
T Consensus        28 V~~WL~~lgL~qY~~~F~~~g~d~~e~l~~lt~~DL~~----lGIt-~~GHRkkIL~ai~~Lr   85 (90)
T 3h8m_A           28 VGEWLQAIKMERYKDNFTAAGYNSLESVARMTIEDVMS----LGIT-LVGHQKKIMSSIQTMR   85 (90)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHH----TTCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCChHHHHHHHHHcCCChHHHHhhCCHHHHHH----CCCC-CHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999999765    4764 5789999999999874

>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0

Probab=96.07  E-value=0.014  Score=43.39  Aligned_cols=58  Identities=12%  Similarity=0.331  Sum_probs=50.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      +...|..-+|-+|.+.|.+.|=|++++|....++++.+    +|. .+|=|-+|+-+|+++..
T Consensus        24 V~~WL~~lgL~qY~~~F~~~g~d~le~l~~lt~~DL~~----LGI-t~~GHRkkIL~ai~~Lr   81 (86)
T 3kka_C           24 VSEWLESIKMQQYTEHFMAAGYTAIEKVVQMTNDDIKR----IGV-RLPGHQKRIAYSLLGLK   81 (86)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCSHHHHHTCCHHHHHH----TTC-CCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhCCcHHHHHHHHHcCCChHHHHHhCCHHHHHH----CCC-CCHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999999998875    576 56889999999999864

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=95.89  E-value=0.018  Score=46.16  Aligned_cols=58  Identities=22%  Similarity=0.397  Sum_probs=49.4

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      +-..|+.-+|-+|.+.|.+.|=|+.+.|....++++.+    +|+ +++-|.+|+.+|++.+.
T Consensus        82 v~~WL~~igL~qY~~~F~~~g~d~~~~l~~lt~~dL~~----lGI-~~~gHr~kIl~ai~~l~  139 (149)
T 3sei_A           82 LAVWLSMIGLAQYYKVLVDNGYENIDFITDITWEDLQE----IGI-TKLGHQKKLMLAVRKLA  139 (149)
T ss_dssp             HHHHHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----HTC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCchhhHHHHHHCCCchHHHHhhCCHHHHHH----CCC-CCHHHHHHHHHHHHHHH
Confidence            34458888999999999999999999999999988754    576 46899999999998764

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=95.68  E-value=0.0054  Score=48.74  Aligned_cols=57  Identities=18%  Similarity=0.223  Sum_probs=48.2

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE   76 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~   76 (235)
                      +...|..-+|-+|.+.|.+.|=|+++.|+...++++   +.-+|+. |+-|.+|+.+|+++
T Consensus        91 v~~WL~~i~L~qY~~~F~~~g~~~~~~l~~lt~~dL---l~~lGI~-~~gHrkrIl~ai~~  147 (148)
T 2kiv_A           91 VAEWLDSIELGDYTKAFLINGYTSMDLLKKIAEVEL---INVLKIN-LIGHRKRILASLGD  147 (148)
T ss_dssp             HHHHHHTTTCCTHHHHHHHHTCCSHHHHTSCCHHHH---HHHTCCC-CHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCChHHHHHhCCHHHH---HHhCCCC-ChhHHHHHHHHHhh
Confidence            445799999999999999999999999999998775   3446764 68899999999864

>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A

Probab=95.66  E-value=0.015  Score=42.91  Aligned_cols=55  Identities=18%  Similarity=0.294  Sum_probs=47.8

Q ss_pred             HHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy1866          17 YRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE   76 (235)
Q Consensus        17 y~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~   76 (235)
                      -..|+.-+|-+|.+.|.+.|=|++++|....++|+.+    +|.. +|=|-+|+-+|+++
T Consensus        27 ~~WL~~lgL~qY~~~F~~~g~~s~e~l~~lt~~DL~~----lGIt-~~GHRkkIL~aiq~   81 (82)
T 3hil_A           27 SEWLESIRMKRYILHFHSAGLDTMECVLELTAEDLTQ----MGIT-LPGHQKRILCSIQG   81 (82)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTCCSGGGGTTCCHHHHHH----TTCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHcCCChHHHHhcCCHHHHHH----CCCC-CHHHHHHHHHHHHh
Confidence            3457888999999999999999999999999999865    4764 58899999999986

>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}

Probab=95.54  E-value=0.012  Score=46.80  Aligned_cols=59  Identities=22%  Similarity=0.345  Sum_probs=50.6

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHH--hhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLC--EAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~--~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      +...|..-+|-+|-+.|++.|=|+...++  ...++|+.    -+|+. +|.|-+||.+|++....
T Consensus        17 V~~WL~~igL~~Y~~~F~~~g~d~~~~l~~~~lt~~DL~----~lGI~-~~ghRkkil~ai~~L~~   77 (148)
T 2kiv_A           17 VGQWLESIGLPQYENHLMANGFDNVQAMGSNVMEDQDLL----EIGIL-NSGHRQRILQAIQLLPK   77 (148)
T ss_dssp             HHHHHHHHSCTTSHHHHHHTTTTBGGGGTSSCCCHHHHH----HHCCS-STTSHHHHHHHHHHCSC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCHHHHhhhccCCHHHHH----HCCCC-CHHHHHHHHHHHHHHHH
Confidence            45579999999999999999999999998  88888875    46875 58999999999998743

>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}

Probab=95.49  E-value=0.016  Score=43.92  Aligned_cols=57  Identities=25%  Similarity=0.371  Sum_probs=49.9

Q ss_pred             HHHHHhhhhHHHHHHHHHcCCchHHHH--HhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          17 YRVMQRASLLAYYDTLLEMGGDDVQQL--CEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        17 y~vlqrAnLl~Yyd~~i~~GgDdvqql--~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      ...|+.-+|-+|-+.|++.|=|+...|  +...++++.+    +|+. ++-|-+|+.+|++...
T Consensus        26 ~~WL~~igL~qY~~~F~~~gid~~~~l~~~~lt~~DL~~----lGI~-~~GhRkkIl~ai~~L~   84 (103)
T 2ke7_A           26 GQWLESIGLPQYENHLMANGFDNVQFMGSNVMEDQDLLE----IGIL-NSGHRQRILQAIQLLP   84 (103)
T ss_dssp             THHHHHTTCTTCHHHHHHTTCCCHHHHHTTCCCHHHHHH----HTCC-CHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCcHHHHhcccCCHHHHhH----CCCC-CHHHHHHHHHHHHHHH
Confidence            347999999999999999999999999  7999999776    5764 5889999999999974

>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A

Probab=95.29  E-value=0.026  Score=45.20  Aligned_cols=59  Identities=15%  Similarity=0.327  Sum_probs=51.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      ++...|+.-+|-+|-+.|.+.|=| .++|....++|+.    -+|+. +|.|-+|+.+|++++..
T Consensus        12 ~V~~WL~~lgL~~Y~~~F~~~g~d-~~~l~~lt~~DL~----~lGIt-~~gHrkkil~ai~~L~~   70 (149)
T 3sei_A           12 AVSQWLTAFQLQLYAPNFISAGYD-LPTISRMTPEDLT----AIGVT-KPGHRKKIAAEISGLSI   70 (149)
T ss_dssp             HHHHHHHTTTCGGGHHHHHHTTCC-HHHHTTCCHHHHH----HTTCC-SHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHCCcHHHHHHHHHcCCC-HHHHccCCHHHHH----HcCCC-CHHHHHHHHHHHHHHHh
Confidence            566778999999999999999988 9999999999986    46885 59999999999998743

>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}

Probab=95.22  E-value=0.058  Score=38.80  Aligned_cols=61  Identities=16%  Similarity=0.241  Sum_probs=50.7

Q ss_pred             hHHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          13 ELQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        13 elqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      .-++...|+..+|-+|-+.|.+.|=|... |+.+.++++.+    +|+. ++-|.+|+.+|+++...
T Consensus        12 ~~~V~~WL~~lgl~~Y~~~F~~~~idg~~-Ll~Lt~~dL~~----lGI~-~~ghr~kIl~aI~~L~~   72 (81)
T 3bq7_A           12 TEEVAAWLEHLSLCEYKDIFTRHDIRGSG-LLHLERRDLKD----LGVT-KVGHMKRILCGIKELSR   72 (81)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHTTCCHHH-HTTCCHHHHHH----TTCC-CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHcCCCHHH-HCcCCHHHHhH----cCCC-CHHHHHHHHHHHHHHHH
Confidence            34677789999999999999998877655 99999999765    6764 68899999999998754

>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}

Probab=94.69  E-value=0.089  Score=37.90  Aligned_cols=57  Identities=9%  Similarity=0.088  Sum_probs=48.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      +...|+.-+|-+|.+.|.+.| =|.+.|..+.++++.+    +|+.  +=|-+|+-+|++++..
T Consensus         5 v~~wL~~lgL~~Y~~~F~~~~-id~e~l~~lt~~DL~~----lGI~--~G~RkkIl~ai~~~~~   61 (74)
T 3k1r_B            5 LETFLASLHMEDFAALLRQEK-IDLEALMLCSDLDLRS----ISVP--LGPREKILGAVRRRRQ   61 (74)
T ss_dssp             HHHHHHTTTCGGGHHHHHHTT-CCHHHHTTCCHHHHHH----TTCC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcC-cCHHHHhHCCHHHHHH----cCCC--cchHHHHHHHHHHHHH
Confidence            456789999999999999876 5799999999999664    5776  8899999999999875

>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}

Probab=93.26  E-value=0.12  Score=36.14  Aligned_cols=58  Identities=19%  Similarity=0.203  Sum_probs=46.3

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      ++...|+..+|-+|-+.|.+++=|- +.|+.+.++++.+    +|+. ++-|-+++.+|+++..
T Consensus        11 ~V~~WL~~~gl~~y~~~F~~~~i~g-~~Ll~l~~~dL~~----lGI~-~~g~r~kil~~i~~L~   68 (74)
T 2gle_A           11 QVSHWLVGLSLDQYVSEFSAQNISG-EQLLQLDGNKLKA----LGMT-SSQDRALVKKKLKEMK   68 (74)
T ss_dssp             GGHHHHHHTTTHHHHHHHTTTTCCH-HHHHTCCHHHHHT----TTCC-CHHHHHHHHHHHHSHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCH-HHHhhCCHHHHHH----cCCC-CHHHHHHHHHHHHHHH
Confidence            4566788899999999999986544 8999999998543    6764 4789999999988653

>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A

Probab=93.20  E-value=0.18  Score=35.74  Aligned_cols=59  Identities=15%  Similarity=0.236  Sum_probs=47.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          14 LQLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        14 lqly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      -++...|+..+|-+|-+.|.+.|=|-. .|+.+.++++.    -+|+ +++-|-+|+.+|+++..
T Consensus         8 ~~V~~WL~~lgl~~Y~~~F~~~~idg~-~Ll~Lt~~dL~----~lGI-~~~Ghr~kIl~aI~~l~   66 (76)
T 2f3n_A            8 FDVGDWLESIHLGEHRDRFEDHEIEGA-HLPALTKEDFV----ELGV-TRVGHRENIERALRQLD   66 (76)
T ss_dssp             HHHHHHHHHTTCGGGHHHHHHTTCCGG-GGGGCCHHHHH----HTTC-CCHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHcCCCHH-HHccCCHHHHH----HcCC-CChhHHHHHHHHHHHHH
Confidence            356678999999999999999887665 89999999974    3565 35779999999998754

>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.50  E-value=0.29  Score=34.92  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             HHHHHHHhhh--hHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          15 QLYRVMQRAS--LLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        15 qly~vlqrAn--Ll~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      ++...|+.-+  |-+|-+.|.+.+=| -+.|..+.++++.+    +|+. ++-|-+++.+|++...
T Consensus        15 ~V~~WL~~l~~gl~~Y~~~F~~~~I~-G~~Ll~Lt~~dL~~----LGI~-~~ghr~~il~~I~~L~   74 (83)
T 2ean_A           15 QVVDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELED----LGVS-RIGHQELILEAVDLLC   74 (83)
T ss_dssp             HHHHHHTTSCGGGTTTHHHHHHHTCC-HHHHTTCCHHHHHH----HTCC-CSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHCCCC-HHHHhhCCHHHHHH----hCCC-CHHHHHHHHHHHHHHH
Confidence            5666777664  88999999998764 78999999999865    6775 7889999999887753

>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}

Probab=92.08  E-value=0.59  Score=32.79  Aligned_cols=59  Identities=7%  Similarity=0.120  Sum_probs=47.5

Q ss_pred             HHHHHHHHhh--hhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          14 LQLYRVMQRA--SLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        14 lqly~vlqrA--nLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      =++...|+..  ++-+|-+.|.+++=|- +.|+.+.++++.+    +|+. ++-|-.++.++++.-.
T Consensus         9 ~~V~~WL~~~~~gl~~y~~~F~~~~I~G-~~Ll~L~~~dL~~----lGI~-~~g~r~~il~~I~~Lr   69 (78)
T 3bs7_A            9 SDVLKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQR----MGVT-DNRDREAIWREIVKQR   69 (78)
T ss_dssp             HHHHHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHCCCCH-HHHhhCCHHHHhH----cCCC-CHHHHHHHHHHHHHHH
Confidence            3566778885  8999999999988766 8999999998765    5664 6789999999887653

>1v85_A Similar to ring finger protein 36; apoptosis, neuron, cell death, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=90.87  E-value=0.87  Score=33.37  Aligned_cols=65  Identities=18%  Similarity=0.202  Sum_probs=52.4

Q ss_pred             hHHHHHHHHhhhh--HHHHHHHHHcCCchHHHHHhhChHHHHH-HHHHhcCCCCchHHHHHHHHHHHHhcCCC
Q psy1866          13 ELQLYRVMQRASL--LAYYDTLLEMGGDDVQQLCEAGEEEFLE-IMALVGMASKPLHVRRLQKALQEWTTNPA   82 (235)
Q Consensus        13 elqly~vlqrAnL--l~Yyd~~i~~GgDdvqql~~~~e~efle-im~lvGM~~KPlHVrRlqkal~~w~~~p~   82 (235)
                      .=++-..|++.++  -+|-+.|.++ .=|-+.|+.+.++++.+ -   +|+ .+.-|.+||.+++++....+.
T Consensus        22 ~~dV~~WL~~~gl~~~~Y~~~F~~~-~IdG~~Ll~Lt~~dL~~~~---LGI-~~~g~r~~il~~I~~Lr~~~~   89 (91)
T 1v85_A           22 TEEVVLWLEQLGPWASLYRDRFLSE-RVNGRLLLTLTEEEFSRAP---YTI-ENSSHRRVILTELERVRSGPS   89 (91)
T ss_dssp             HHHHHHHHHHHCGGGHHHHHHHHHT-TCCHHHHHHCCHHHHHSTT---TCC-CCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHh-CCCHHHHhcCCHHHHhccC---CCC-CCHHHHHHHHHHHHHHHhccC
Confidence            3466677999999  9999999987 66788999999998875 2   255 567899999999999876653

>1ow5_A Serine/threonine-protein kinase STE11; MAP kinase, MAPKKK, SAM domain, pointed domain, SCM domain, STE50 regulator, transferase; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1x9x_A

Probab=90.61  E-value=0.33  Score=37.22  Aligned_cols=59  Identities=7%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      ++...|..-|+-+|.+.|++-|=+.++-|.+++.+.+.||    |. +|.=|..|+-|+.....
T Consensus        17 ~v~~wL~si~c~qY~~~F~eN~I~g~d~L~eLd~e~LkEl----GI-~kvGdRirIlk~vk~Lr   75 (85)
T 1ow5_A           17 FVQLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIAL----GV-NKIGDRLKILRKSKSFQ   75 (85)
T ss_dssp             HHHHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHHH----TC-CCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCChhHHHHHHHcCCCcHHHHHHcCHHHHHHh----CC-CcccHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999998877664    65 47889999999887654

>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}

Probab=90.45  E-value=1  Score=31.73  Aligned_cols=59  Identities=17%  Similarity=0.153  Sum_probs=47.0

Q ss_pred             HHHHHHHHhh--hhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          14 LQLYRVMQRA--SLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        14 lqly~vlqrA--nLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      -++...|+.-  +|-+|-+.|.+.+=| -+.|..+.++++.+    +|+. ++-|-+|+.+|++...
T Consensus        10 ~~V~~WL~~l~~gl~~Y~~~F~~~~i~-G~~Ll~L~~~dL~~----lGI~-~~ghr~~il~~I~~L~   70 (80)
T 3bs5_B           10 SQVVDWMKGLDDCLQQYIKNFEREKIS-GDQLLRITHQELED----LGVS-RIGHQELILEAVDLLC   70 (80)
T ss_dssp             HHHHHHHHTSCGGGGGGHHHHHHHTCC-HHHHHTCCHHHHHH----TTCC-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHcCCC-HHHHHHCCHHHHHH----cCCC-CHHHHHHHHHHHHHHH
Confidence            3566778877  499999999998764 78899999998865    6664 6789999999988753

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=89.27  E-value=0.46  Score=42.15  Aligned_cols=60  Identities=22%  Similarity=0.256  Sum_probs=49.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      ++..-|+.=+|-+|-+.|.+.+-|... |..+.++|+.   .-+|| ++|+|-+||..||++...
T Consensus        22 ~V~~WLe~~GL~~Y~~~f~~n~~dG~~-Ll~lt~~dLe---~eLGI-~nplHRkKL~laI~el~~   81 (265)
T 3tad_C           22 QVCSWLAEQGLGSYLSSGKHWIISGQT-LLQASQQDLE---KELGI-KHSLHRKKLQLALQALGS   81 (265)
T ss_dssp             HHHHHHHHTTCCTTHHHHTTTCSCSHH-HHHSCHHHHH---HHTCC-CSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCHHHHHHHHHHhCCchHH-HHhCCHHHHH---HHhCC-CCHHHHHHHHHHHHHhcc
Confidence            556668878899999999999888775 7788888874   23488 599999999999999975

>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}

Probab=88.51  E-value=1.5  Score=33.32  Aligned_cols=57  Identities=7%  Similarity=0.137  Sum_probs=47.4

Q ss_pred             HHHHHHHhh--hhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          15 QLYRVMQRA--SLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        15 qly~vlqrA--nLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      ++...|+..  ++-+|-+.|.+++=|- +.|..+.++++.+    +|+. +.-|.+||.++++..
T Consensus        30 ~V~~WL~~~~~gl~~Y~~~F~~~~I~G-~~Ll~Lt~~dLk~----LGI~-~~GhR~kIl~~I~~L   88 (106)
T 3bs5_A           30 DVLKWYRRHCGEYTQYEQLFAQHDITG-RALLRITDSSLQR----MGVT-DNRDREAIWREIVKQ   88 (106)
T ss_dssp             HHHHHHHHHSGGGGGGHHHHHHTTCCH-HHHTTCCHHHHHH----HTCC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcchHHHHHHHHHcCccH-HHHhhCCHHHHHh----cCCC-CHHHHHHHHHHHHHH
Confidence            667778988  9999999999987665 8999999998765    6764 578999999988765

>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2

Probab=83.02  E-value=0.47  Score=35.97  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=52.4

Q ss_pred             CCChhhH---HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866           8 PNNEAEL---QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus         8 p~~~~el---qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      +....+|   ++-.-|++.++-+|-+.| .+  =|=+.|..+.+++|.+. . +|+ .+.-|.+||..|+++..+
T Consensus        14 ~~~v~~Ws~edV~~WL~~~Gl~~Y~~~F-~~--IdG~~LL~Lt~~dLk~~-~-LgI-~~~g~rkkl~~~I~~L~~   82 (97)
T 2d8c_A           14 MKEVVYWSPKKVADWLLENAMPEYCEPL-EH--FTGQDLINLTQEDFKKP-P-LYR-VSSDNGQRLLDMIETLKM   82 (97)
T ss_dssp             CSCCSSCCTTHHHHHHHHTTCTTTTTTT-TT--CCHHHHHTCCHHHHHSS-S-SSS-CSTTTTHHHHHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHHcCCHHHHHHH-Hc--CCCHHHhcCCHHHHhhC-C-CCC-CCHHHHHHHHHHHHHHHH
Confidence            3444455   888889999999999999 55  77889999999999871 0 254 678899999999998764

>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.95  E-value=0.63  Score=35.68  Aligned_cols=66  Identities=15%  Similarity=0.148  Sum_probs=49.3

Q ss_pred             CCChhhH---HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866           8 PNNEAEL---QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus         8 p~~~~el---qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      |.++.+|   ++-..|+-.+|-.||=.+.+.-+=|=.-|++..||+..|   -.||  ++|||+.+-|.++-|-
T Consensus        12 P~dLs~lSv~EVs~~Lr~igL~e~vv~~F~~e~IDG~lL~~L~ee~L~e---df~l--s~Lq~kKi~~fI~GWr   80 (84)
T 2dkz_A           12 PADLSGLSIEEVSKSLRFIGLSEDVISFFVTEKIDGNLLVQLTEEILSE---DFKL--SKLQVKKIMQFINGSG   80 (84)
T ss_dssp             CSCCSSCCHHHHHHHGGGTCCCHHHHHHHHTTTCCHHHHHHCCHHHHHH---TSCC--CHHHHHHHHHHHHCCC
T ss_pred             chhhhhcCHHHHHHHHHHcCCcHHHHHHHHHHccchHHHHhCCHHHHHh---hcCC--CHHHHHHHHHHHhcCC
Confidence            5555555   566778899999988555555556667788888876544   3577  8999999999999884

>3tad_C Liprin-beta-1; protein binding; 2.90A {Mus musculus}

Probab=82.16  E-value=2.4  Score=37.63  Aligned_cols=59  Identities=20%  Similarity=0.175  Sum_probs=50.5

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      .+-+-|..-+|-||.+.|.+.|-| ..-|-...++|+.    -.||.+ ++|-++|..|++....
T Consensus        94 wv~~WL~~IGL~QY~~~F~~~~iD-g~~L~~LT~~DL~----~LGIt~-~~HR~kil~aI~~L~~  152 (265)
T 3tad_C           94 WVTRWLDDIGLPQYKTQFDEGRVD-GRMLHYMTVDDLL----SLKVVS-VLHHLSIKRAIQVLRI  152 (265)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHTCC-HHHHHTCBHHHHH----HTTCCB-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHcCCC-HHHhcccCHHHHH----HcCCCc-HHhHHHHHHHHHHHhh
Confidence            456889999999999999999988 5788888899988    479976 9999999999987543

>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.62  E-value=2.5  Score=31.57  Aligned_cols=61  Identities=15%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             hhHHHHHHHHhhhhHH--HHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          12 AELQLYRVMQRASLLA--YYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        12 ~elqly~vlqrAnLl~--Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      ..-|+...|+..+|-+  |-+.|.+++=|- +.|+.+.++++.|    +|+. +.-|-++|.+++++..
T Consensus        31 s~~~V~~WL~~lgl~~~~y~~~F~~~~I~G-~~Ll~Lt~~dLke----LGI~-~~G~R~kil~~I~~Lr   93 (103)
T 2e8o_A           31 GPEQVCSFLRRGGFEEPVLLKNIRENEITG-ALLPCLDESRFEN----LGVS-SLGERKKLLSYIQRLV   93 (103)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTCCT-TTTTTCCHHHHHH----TTCC-CHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCChHHHHHHHHHcCCCH-HHHHhCCHHHHHH----cCCC-CHHHHHHHHHHHHHHH
Confidence            3446777899999987  999999975433 3788888888765    5664 5778889988888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1dlja3	108	c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD	0.003

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 181 PHLEPKAQNSKKKICKDLEAVFQMSDEAVILKVKDNVHDSNLERITNKKYGRQL 234
           P L       +  +  DLE   + ++  +I+    N +D+ L+ + NK Y R +
Sbjct: 56  PMLNKLESEDQSVLVNDLENFKKQAN--IIVT---NRYDNELQDVKNKVYSRDI 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1v38a_	78	Sam-domain protein samsn-1 {Mouse (Mus musculus) [	98.05
d1ow5a_	60	Serine/threonine-protein kinase ste11 {Baker's yea	97.7
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	97.67
d1ucva_	81	Ephrin type-A receptor 8, C-terminal domain {Human	97.65
d1b0xa_	72	EphA4 receptor tyrosine kinases {Mouse (Mus muscul	97.62
d1x40a1	78	Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [Ta	97.52
d1b4fa_	74	EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]	97.13
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	96.09
d2f3na1	64	Sh3 and multiple ankyrin repeat domains 3 (Shank3)	94.33
d1wwva1	78	Connector enhancer of kinase suppressor of Ras 1,	83.25
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	82.93
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	81.06

>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sam-domain protein samsn-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=5.3e-06  Score=58.09  Aligned_cols=62  Identities=24%  Similarity=0.407  Sum_probs=54.5

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcCCC
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTNPA   82 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~p~   82 (235)
                      +...|+.-+|-+|.+.|++.|=|+.++|+...++++.+    +|+ .+|-|.+||.+|++.....|+
T Consensus        15 V~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~----lGI-~~~~hr~kil~ai~~L~~~~s   76 (78)
T d1v38a_          15 IQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIE----LNI-ADPEDRARLLSAAESLLSGPS   76 (78)
T ss_dssp             HHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHH----TTT-CCHHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHCCHHHHHHHHHHcCccchHHHccCCHHHHhH----cCC-CCHHHHHHHHHHHHHhhcCCC
Confidence            33449999999999999999999999999999998754    588 789999999999999987765

>d1ow5a_ a.60.1.2 (A:) Serine/threonine-protein kinase ste11 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Serine/threonine-protein kinase ste11
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.70  E-value=4.9e-05  Score=50.89  Aligned_cols=55  Identities=7%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             HHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy1866          17 YRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE   76 (235)
Q Consensus        17 y~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~   76 (235)
                      -..|++.+|-+|.+.|+++|-+|.+.|+...|+++.+    +|+. |+-|-+|+-+|+++
T Consensus         4 ~~wL~~lgL~~Y~~~F~~~~~i~~~~l~~l~~~dL~~----lGI~-~~ghr~ril~~i~~   58 (60)
T d1ow5a_           4 QLFLEEIGCTQYLDSFIQCNLVTEEEIKYLDKDILIA----LGVN-KIGDRLKILRKSKS   58 (60)
T ss_dssp             HHHHHHHSCTHHHHHHHHHTCCCHHHHHHCCHHHHHH----HTCC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHcCCCcHHHHHhCCHHHHHH----cCCC-CHHHHHHHHHHHHH
Confidence            3568999999999999999999999999999999876    4654 78999999999986

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=3.5e-05  Score=52.04  Aligned_cols=54  Identities=9%  Similarity=0.073  Sum_probs=48.3

Q ss_pred             HHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy1866          17 YRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE   76 (235)
Q Consensus        17 y~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~   76 (235)
                      ...|..-+|-+|.|.|+++|=|+++++++..+||+.+    .|+..  =|-+|+.||+++
T Consensus         3 ~~wL~~lgL~~Y~~~F~~~G~~~l~~l~~lt~eDL~~----lGI~~--~hr~kilk~i~~   56 (57)
T d1dxsa_           3 VSFLTGLGCPNCIEYFTSQGLQSIYHLQNLTIEDLGA----LKIPE--QYRMTIWRGLQD   56 (57)
T ss_dssp             HHHHHHTTCTTSHHHHHTTTCCCHHHHHTCCHHHHHH----TTCCT--TTHHHHHHHHHH
T ss_pred             HHHHHHCCcHHHHHHHHHccCCcHHHHHHhhHHHHHH----cCCCH--HHHHHHHHHHHh
Confidence            4568999999999999999999999999999999876    58854  699999999986

>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Ephrin type-A receptor 8, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.2e-05  Score=52.92  Aligned_cols=58  Identities=10%  Similarity=0.182  Sum_probs=51.1

Q ss_pred             HHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          18 RVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        18 ~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      ..|..-+|-+|.+.|.+.|=|++++|+...++++.+    +|| .++.|.+||.+|+++....
T Consensus        12 ~WL~~lgL~qY~~~F~~~gi~~~~~L~~lt~~dL~~----lGI-~~~ghr~kIl~~i~~Lk~~   69 (81)
T d1ucva_          12 DWLDSIRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA----LGI-TLMGHQKKILGSIQTMRAQ   69 (81)
T ss_dssp             HHHHHTTCGGGHHHHHHTTCCBHHHHTTCCHHHHHH----HTC-CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCccHHHHHHHHHcCCchHHHHHhCCHHHHHH----cCC-CCHHHHHHHHHHHHHHHHH
Confidence            458999999999999999999999999999999765    576 5789999999999987653

>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphA4 receptor tyrosine kinases
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=6.5e-05  Score=51.65  Aligned_cols=55  Identities=13%  Similarity=0.301  Sum_probs=48.9

Q ss_pred             HHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          19 VMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        19 vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      .|+..+|-+|.+.|.+.|=|+.+.|+...++++.+    +|+ .++-|.+||.+|++.-.
T Consensus        10 WL~~lgL~~Y~~~F~~~~~~~~~~l~~l~~~dL~~----lGI-~~~ghr~ki~~ai~~Lr   64 (72)
T d1b0xa_          10 WLQAIKMDRYKDNFTAAGYTTLEAVVHMSQDDLAR----IGI-TAITHQNKILSSVQAMR   64 (72)
T ss_dssp             HHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----HTC-CCHHHHHHHHHHHHHHH
T ss_pred             HHHHCCcHHHHHHHHHcCCCcHHHHHHCCHHHHHH----cCC-CCHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999999875    475 57899999999998753

>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Centaurin-delta 1 (Arap2)
species: Human(Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.6e-05  Score=53.04  Aligned_cols=60  Identities=23%  Similarity=0.267  Sum_probs=53.0

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      ++...|++-+|-+|.+.|.+.|=||+++|++..++++.++    |+ +++-|.+|+.+|++.-.+
T Consensus        10 dV~~WL~~lgL~~Y~~~F~~~g~~~~~~l~~l~~~dL~~l----GI-~~~ghr~kil~~i~~Lr~   69 (78)
T d1x40a1          10 DIKDFLMSINLEQYLLHFHESGFTTVKDCAAINDSLLQKI----GI-SPTGHRRRILKQLQIILS   69 (78)
T ss_dssp             BHHHHHHTTTCGGGHHHHHHHTCCBSGGGGGCCHHHHHHH----TC-CCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHCchHHHHHHHHHcCCCCHHHHHHCCHHHHHHc----CC-CCHHHHHHHHHHHHHHHH
Confidence            3677899999999999999999999999999999987663    65 578999999999998765

>d1b4fa_ a.60.1.2 (A:) EphB2 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: EphB2 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00052  Score=47.04  Aligned_cols=54  Identities=15%  Similarity=0.265  Sum_probs=47.5

Q ss_pred             HHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Q psy1866          19 VMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEW   77 (235)
Q Consensus        19 vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w   77 (235)
                      .|..-+|-+|.+.|.++|=|+++.|+...++++.+    +|+ .++-|.+|+.++++..
T Consensus        12 WL~~lgL~~Y~~~F~~~~idg~~~l~~l~~~~L~~----lGI-~~~ghr~ril~~i~~L   65 (74)
T d1b4fa_          12 WLEAIKMGQYKESFANAGFTSFDVVSQMMMEDILR----VGV-TLAGHQKKILNSIQVM   65 (74)
T ss_dssp             HHHHTTCGGGHHHHHHTTCCSHHHHTTCCHHHHHH----TTC-CCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHH----cCC-CChhHHHHHHHHHHHH
Confidence            48899999999999999999999999999887765    576 4789999999999865

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=96.09  E-value=0.0011  Score=45.06  Aligned_cols=54  Identities=15%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             HHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHh
Q psy1866          16 LYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWT   78 (235)
Q Consensus        16 ly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~   78 (235)
                      +...|..-+|-+|-+.|.+.|.|+   |....|+++.+    +|+. + =|-+||.+|+++..
T Consensus         8 v~~WL~~l~L~~Y~~~F~~~~~d~---l~~lt~~dL~~----lGI~-~-GhRkkil~~I~~Lk   61 (62)
T d1oxja1           8 IGLWLKSLRLHKYIELFKNMTYEE---MLLITEDFLQS----VGVT-K-GASHKLALCIDKLK   61 (62)
T ss_dssp             HHHHHHHTTCGGGGGGGTTCCHHH---HTTCCHHHHHH----TTCC-H-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCcHHHHHHHHhCCHHH---HHhCCHHHHHH----cCCC-H-HHHHHHHHHHHHhc
Confidence            445689999999999999998875   56677777643    6884 5 49999999998763

>d2f3na1 a.60.1.2 (A:2-65) Sh3 and multiple ankyrin repeat domains 3 (Shank3) {Rat(Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Sh3 and multiple ankyrin repeat domains 3 (Shank3)
species: Rat(Rattus norvegicus) [TaxId: 10116]

Probab=94.33  E-value=0.034  Score=36.20  Aligned_cols=56  Identities=18%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHH
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQE   76 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~   76 (235)
                      ++..-|+.-+|-+|.+.|.++|= |-..|....++++.+    +|+ .++-|-+|+.+|+++
T Consensus         8 ~V~~wL~~~gl~~y~~~F~~~~i-~g~~L~~l~~~dL~~----lGi-~~~g~r~~il~~i~~   63 (64)
T d2f3na1           8 DVGDWLESIHLGEHRDRFEDHEI-EGAHLPALTKEDFVE----LGV-TRVGHRENIERALRQ   63 (64)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHTTC-CGGGGGGCCHHHHHH----TTC-CCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHCCC-cHHHhhcCCHHHHHH----cCC-CCHHHHHHHHHHHHh
Confidence            56677889999999999999874 347788888888653    576 468899999999874

>d1wwva1 a.60.1.2 (A:8-85) Connector enhancer of kinase suppressor of Ras 1, CNK1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: Connector enhancer of kinase suppressor of Ras 1, CNK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.28  Score=32.98  Aligned_cols=59  Identities=3%  Similarity=-0.069  Sum_probs=46.6

Q ss_pred             HHHHHHHhhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhc
Q psy1866          15 QLYRVMQRASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTT   79 (235)
Q Consensus        15 qly~vlqrAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~   79 (235)
                      ++..-|+..++-+|-+.|.+.+=| -..|+...++++.+    .|+ .|.-|-+|+-+++....+
T Consensus        11 ~V~~WL~~~gl~~y~~~F~~~~I~-G~~Ll~L~~~dL~~----lgI-~~~ghr~~il~~i~~Lk~   69 (78)
T d1wwva1          11 KVATWLRGLDDSLQDYPFEDWQLP-GKNLLQLCPQSLEA----LAV-RSLGHQELILGGVEQLQA   69 (78)
T ss_dssp             THHHHHHHHCHHHHTSCHHHHCCC-HHHHTTCCTTTGGG----GTC-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcchHHHHHHHHHcCCC-cHHHHHhhHHHHHH----hCC-CCHHHHHHHHHHHHHHHH
Confidence            355567888999999999988764 47799999999765    354 567899999999988754

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=82.93  E-value=0.42  Score=37.95  Aligned_cols=54  Identities=26%  Similarity=0.394  Sum_probs=46.3

Q ss_pred             hhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCCCchHHHHHHHHHHHHhcC
Q psy1866          23 ASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMASKPLHVRRLQKALQEWTTN   80 (235)
Q Consensus        23 AnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~KPlHVrRlqkal~~w~~~   80 (235)
                      ++...||+.|++... +++.|.+++++|+.+++.=+|+-.|=   +||+++.+..+.+
T Consensus        46 ~~v~~~~~~l~~~~p-t~~~la~a~~~~l~~~i~~~g~~~ka---~~l~~~~~~i~~~   99 (224)
T d1kg2a_          46 ATVIPYFERFMARFP-TVTDLANAPLDEVLHLWTGLGYYARA---RNLHKAAQQVATL   99 (224)
T ss_dssp             HHHHHHHHHHHHHCS-SHHHHHHSCHHHHHHHHTTSCCTHHH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHhhHHHHHhHhhhhhHHHHH---HHHHHhhhhhhhh
Confidence            566789999999864 89999999999999999999998764   7888888877765

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=81.06  E-value=0.57  Score=37.21  Aligned_cols=56  Identities=9%  Similarity=0.181  Sum_probs=46.8

Q ss_pred             hhhhHHHHHHHHHcCCchHHHHHhhChHHHHHHHHHhcCCC-CchHHHHHHHHHHHHh
Q psy1866          22 RASLLAYYDTLLEMGGDDVQQLCEAGEEEFLEIMALVGMAS-KPLHVRRLQKALQEWT   78 (235)
Q Consensus        22 rAnLl~Yyd~~i~~GgDdvqql~~~~e~efleim~lvGM~~-KPlHVrRlqkal~~w~   78 (235)
                      .++...+|+.|++.-+ |++.|..++++|+.+++.=+|+.. |--++.++-+.|.+..
T Consensus        48 ~~~v~~~~~~l~~~~p-t~~~la~a~~~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~  104 (217)
T d1keaa_          48 AGHVKKIYDKFFVKYK-CFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDY  104 (217)
T ss_dssp             HHHHHHHHHHHHHHCC-SHHHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc-cHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc
Confidence            4677889999999875 899999999999999999999874 8777777777666653