Psyllid ID: psy1883


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80-
MGPRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
cccccccHHHHHHHcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccc
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEcc
mgprkkelSTYYLLNYLEAHRALELLEDYhskltdpsdKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
mgprkkelSTYYLLNYLEAHRALELLEDYHSkltdpsdkQLRSAIERVIRIFKSRLFQALLGqlggaigisvlGIFKIWDL
MGPRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRlfqallgqlggaigiSVLGIFKIWDL
********STYYLLNYLEAHRALELLEDYHSKL*******LRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIW**
**********YYLLNYLEAHRALELLEDYHS*************IERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
MGPRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
**PRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGPRKKELSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIGISVLGIFKIWDL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query81 2.2.26 [Sep-21-2011]
P31007 970 Disks large 1 tumor suppr yes N/A 0.543 0.045 0.818 4e-15
Q811D0 905 Disks large homolog 1 OS= yes N/A 0.543 0.048 0.636 1e-09
Q62696 911 Disks large homolog 1 OS= yes N/A 0.543 0.048 0.636 1e-09
Q12959 904 Disks large homolog 1 OS= yes N/A 0.543 0.048 0.636 1e-09
Q5PYH6 873 Disks large homolog 1 OS= yes N/A 0.543 0.050 0.613 2e-08
Q28C55 927 Disks large homolog 1 OS= yes N/A 0.543 0.047 0.613 4e-08
>sp|P31007|DLG1_DROME Disks large 1 tumor suppressor protein OS=Drosophila melanogaster GN=dlg1 PE=1 SV=2 Back     alignment and function desciption
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/44 (81%), Positives = 41/44 (93%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
          EAHRALELLEDYH++L++P D+ LR AIERVIRIFKSRLFQALL
Sbjct: 7  EAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSRLFQALL 50




During embryonic development, some isoforms are essential for proper neuronal differentiation and organization. Required for cell polarity; maintenance of apicobasal polarity. Plays a critical role at septate junctions in cellular growth control during larval development. The presence of a guanylate kinase domain suggests involvement in cellular adhesion as well as signal transduction to control cellular proliferation.
Drosophila melanogaster (taxid: 7227)
>sp|Q811D0|DLG1_MOUSE Disks large homolog 1 OS=Mus musculus GN=Dlg1 PE=1 SV=1 Back     alignment and function description
>sp|Q62696|DLG1_RAT Disks large homolog 1 OS=Rattus norvegicus GN=Dlg1 PE=1 SV=1 Back     alignment and function description
>sp|Q12959|DLG1_HUMAN Disks large homolog 1 OS=Homo sapiens GN=DLG1 PE=1 SV=2 Back     alignment and function description
>sp|Q5PYH6|DLG1_DANRE Disks large homolog 1 OS=Danio rerio GN=dlg1 PE=2 SV=2 Back     alignment and function description
>sp|Q28C55|DLG1_XENTR Disks large homolog 1 OS=Xenopus tropicalis GN=dlg1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
32279472573 hypothetical protein SINV_00978 [Solenop 0.691 0.767 0.767 5e-16
332025051 452 Disks large 1 tumor suppressor protein [ 0.555 0.099 0.888 3e-15
350416596 287 PREDICTED: hypothetical protein LOC10074 0.543 0.153 0.909 1e-14
260807941 319 hypothetical protein BRAFLDRAFT_74556 [B 0.543 0.137 0.863 2e-14
333033759 882 discs large 1 [Gryllus bimaculatus] 0.543 0.049 0.886 2e-14
383849085 946 PREDICTED: disks large 1 tumor suppresso 0.641 0.054 0.769 3e-14
347963470 911 AGAP000255-PA [Anopheles gambiae str. PE 0.543 0.048 0.863 3e-14
347963476 939 AGAP000255-PE [Anopheles gambiae str. PE 0.543 0.046 0.863 3e-14
346468259103 hypothetical protein [Amblyomma maculatu 0.543 0.427 0.886 4e-14
195131251 497 GI15715 [Drosophila mojavensis] gi|19390 0.555 0.090 0.822 7e-14
>gi|322794725|gb|EFZ17675.1| hypothetical protein SINV_00978 [Solenopsis invicta] Back     alignment and taxonomy information
 Score = 88.6 bits (218), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 48/56 (85%)

Query: 8  LSTYYLLNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQ 63
          LS +    ++EAHRALELLEDYH+KLT P DKQLR AIERVIRIFKSRLFQALLG+
Sbjct: 10 LSVHLFFVFIEAHRALELLEDYHAKLTRPQDKQLRLAIERVIRIFKSRLFQALLGK 65




Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025051|gb|EGI65238.1| Disks large 1 tumor suppressor protein [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|350416596|ref|XP_003491009.1| PREDICTED: hypothetical protein LOC100743865 [Bombus impatiens] Back     alignment and taxonomy information
>gi|260807941|ref|XP_002598766.1| hypothetical protein BRAFLDRAFT_74556 [Branchiostoma floridae] gi|229284041|gb|EEN54778.1| hypothetical protein BRAFLDRAFT_74556 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|333033759|dbj|BAK23256.1| discs large 1 [Gryllus bimaculatus] Back     alignment and taxonomy information
>gi|383849085|ref|XP_003700177.1| PREDICTED: disks large 1 tumor suppressor protein-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|347963470|ref|XP_310865.5| AGAP000255-PA [Anopheles gambiae str. PEST] gi|347963472|ref|XP_003436951.1| AGAP000255-PB [Anopheles gambiae str. PEST] gi|347963474|ref|XP_003436952.1| AGAP000255-PC [Anopheles gambiae str. PEST] gi|333467180|gb|EAA06750.6| AGAP000255-PA [Anopheles gambiae str. PEST] gi|333467181|gb|EGK96492.1| AGAP000255-PB [Anopheles gambiae str. PEST] gi|333467182|gb|EGK96493.1| AGAP000255-PC [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|347963476|ref|XP_003436953.1| AGAP000255-PE [Anopheles gambiae str. PEST] gi|333467184|gb|EGK96495.1| AGAP000255-PE [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|346468259|gb|AEO33974.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|195131251|ref|XP_002010064.1| GI15715 [Drosophila mojavensis] gi|193908514|gb|EDW07381.1| GI15715 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query81
FB|FBgn0001624 970 dlg1 "discs large 1" [Drosophi 0.469 0.039 0.789 6.3e-10
UNIPROTKB|C9JN61154 DLG1 "Disks large homolog 1" [ 0.456 0.240 0.621 6.1e-07
UNIPROTKB|C9JUA9123 DLG1 "Disks large homolog 1" [ 0.456 0.300 0.621 6.1e-07
UNIPROTKB|F2Z2L0106 DLG1 "Disks large homolog 1" [ 0.456 0.349 0.621 6.1e-07
UNIPROTKB|A8MUT6 208 DLG1 "Disks large homolog 1" [ 0.456 0.177 0.621 9.7e-07
UNIPROTKB|Q12959 904 DLG1 "Disks large homolog 1" [ 0.456 0.040 0.621 1.4e-05
MGI|MGI:107231 905 Dlg1 "discs, large homolog 1 ( 0.456 0.040 0.621 1.4e-05
RGD|2505 911 Dlg1 "discs, large homolog 1 ( 0.456 0.040 0.621 1.8e-05
ZFIN|ZDB-GENE-010724-8 909 dlg1 "discs, large (Drosophila 0.456 0.040 0.594 7.7e-05
UNIPROTKB|E1BT38 933 DLG1 "Uncharacterized protein" 0.456 0.039 0.567 0.0001
FB|FBgn0001624 dlg1 "discs large 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 155 (59.6 bits), Expect = 6.3e-10, P = 6.3e-10
 Identities = 30/38 (78%), Positives = 35/38 (92%)

Query:    18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSR 55
             EAHRALELLEDYH++L++P D+ LR AIERVIRIFKSR
Sbjct:     7 EAHRALELLEDYHARLSEPQDRALRIAIERVIRIFKSR 44




GO:0005886 "plasma membrane" evidence=IDA;IMP;NAS
GO:0005918 "septate junction" evidence=NAS;TAS
GO:0007391 "dorsal closure" evidence=NAS;TAS
GO:0008104 "protein localization" evidence=IMP;TAS
GO:0007268 "synaptic transmission" evidence=IMP
GO:0004385 "guanylate kinase activity" evidence=TAS
GO:0016020 "membrane" evidence=TAS
GO:0005856 "cytoskeleton" evidence=NAS
GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IGI
GO:0016327 "apicolateral plasma membrane" evidence=IDA
GO:0008283 "cell proliferation" evidence=TAS
GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=TAS
GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=NAS;TAS
GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP
GO:0030710 "regulation of border follicle cell delamination" evidence=TAS
GO:0005938 "cell cortex" evidence=IDA
GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS
GO:0008105 "asymmetric protein localization" evidence=IMP;TAS
GO:0007399 "nervous system development" evidence=IMP
GO:0045175 "basal protein localization" evidence=NAS;IMP
GO:0045179 "apical cortex" evidence=IDA
GO:0005198 "structural molecule activity" evidence=TAS
GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=TAS
GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS
GO:0002009 "morphogenesis of an epithelium" evidence=TAS
GO:0043195 "terminal bouton" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0042734 "presynaptic membrane" evidence=IDA
GO:0019991 "septate junction assembly" evidence=TAS
GO:0042127 "regulation of cell proliferation" evidence=TAS
GO:0007010 "cytoskeleton organization" evidence=NAS
GO:0051726 "regulation of cell cycle" evidence=NAS
GO:0005154 "epidermal growth factor receptor binding" evidence=TAS
GO:0008285 "negative regulation of cell proliferation" evidence=TAS
GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS
GO:0016323 "basolateral plasma membrane" evidence=TAS
GO:0045202 "synapse" evidence=IDA;TAS
GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=TAS
GO:0045211 "postsynaptic membrane" evidence=IDA
GO:0051294 "establishment of spindle orientation" evidence=IMP
GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP
GO:0031594 "neuromuscular junction" evidence=IDA
GO:0008049 "male courtship behavior" evidence=IMP
GO:0045475 "locomotor rhythm" evidence=IMP
GO:0007617 "mating behavior" evidence=IMP
GO:0046956 "positive phototaxis" evidence=IMP
GO:0016328 "lateral plasma membrane" evidence=IDA
GO:0048471 "perinuclear region of cytoplasm" evidence=IDA
GO:0005920 "smooth septate junction" evidence=IDA
UNIPROTKB|C9JN61 DLG1 "Disks large homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9JUA9 DLG1 "Disks large homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z2L0 DLG1 "Disks large homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A8MUT6 DLG1 "Disks large homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q12959 DLG1 "Disks large homolog 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:107231 Dlg1 "discs, large homolog 1 (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2505 Dlg1 "discs, large homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-010724-8 dlg1 "discs, large (Drosophila) homolog 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT38 DLG1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q811D0DLG1_MOUSENo assigned EC number0.63630.54320.0486yesN/A
Q5PYH6DLG1_DANRENo assigned EC number0.61360.54320.0504yesN/A
Q12959DLG1_HUMANNo assigned EC number0.63630.54320.0486yesN/A
P31007DLG1_DROMENo assigned EC number0.81810.54320.0453yesN/A
Q28C55DLG1_XENTRNo assigned EC number0.61360.54320.0474yesN/A
Q62696DLG1_RATNo assigned EC number0.63630.54320.0482yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
pfam0905863 pfam09058, L27_1, L27_1 1e-18
smart0056953 smart00569, L27, domain in receptor targeting prot 0.004
>gnl|CDD|192200 pfam09058, L27_1, L27_1 Back     alignment and domain information
 Score = 71.4 bits (175), Expect = 1e-18
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
          +  RAL+LLE+Y SKL+   D+ LRS+IERVI IF+S LFQALL
Sbjct: 6  DTQRALQLLEEYQSKLSQTGDRGLRSSIERVINIFQSDLFQALL 49


The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity. L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices. Length = 63

>gnl|CDD|197794 smart00569, L27, domain in receptor targeting proteins Lin-2 and Lin-7 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 81
PF0905864 L27_1: L27_1; InterPro: IPR015143 The L27 domain i 99.96
PF0904558 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain 97.74
smart0056955 L27 domain in receptor targeting proteins Lin-2 an 97.26
PF0282856 L27: L27 domain; InterPro: IPR014775 The L27 domai 93.35
PRK14736133 atpC F0F1 ATP synthase subunit epsilon; Provisiona 82.89
>PF09058 L27_1: L27_1; InterPro: IPR015143 The L27 domain is a protein interaction module that exists in a large family of scaffold proteins, functioning as an organisation centre of large protein assemblies required for the establishment and maintenance of cell polarity Back     alignment and domain information
Probab=99.96  E-value=9.5e-30  Score=162.70  Aligned_cols=56  Identities=59%  Similarity=0.800  Sum_probs=51.8

Q ss_pred             hchHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q psy1883          14 LNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIG   69 (81)
Q Consensus        14 ~~~~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~~~~   69 (81)
                      ++++||||||++||+||++|++|+|++||++|+||||+|||+||||||||||||+.
T Consensus         3 v~k~dA~rALelLe~y~~~L~~~~D~~lr~~ierli~ifkS~LF~ALLDIqe~YE~   58 (64)
T PF09058_consen    3 VRKEDAHRALELLEEYHNKLSRPEDEELRTAIERLINIFKSRLFQALLDIQEFYEV   58 (64)
T ss_dssp             --HHHHHHHHHHHHHHHHTTSSSS-CCHHHHHHHHHHHHHSHHHHHHHHHCCCCCE
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999983



L27 domains form specific heterotetrameric complexes, in which each domain contains three alpha-helices []. ; PDB: 3LRA_A 1RSO_A.

>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes Back     alignment and domain information
>smart00569 L27 domain in receptor targeting proteins Lin-2 and Lin-7 Back     alignment and domain information
>PF02828 L27: L27 domain; InterPro: IPR014775 The L27 domain is found in receptor targeting proteins Lin-2 and Lin-7, as well as some protein kinases and human MPP2 protein Back     alignment and domain information
>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
1rso_A60 Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complex 8e-07
3lra_A 254 Structural Basis For Assembling A Human Tripartite 1e-06
>pdb|1RSO|A Chain A, Hetero-Tetrameric L27 (Lin-2, Lin-7) Domain Complexes As Organization Platforms Of Supra-Molecular Assemblies Length = 60 Back     alignment and structure

Iteration: 1

Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 23/37 (62%), Positives = 29/37 (78%) Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKS 54 + RAL LLE+Y SKL+ D+QLRS+IERVI IF+S Sbjct: 4 DTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQS 40
>pdb|3LRA|A Chain A, Structural Basis For Assembling A Human Tripartite Complex Dlg1-Mpp7- Mals3 Length = 254 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query81
3lra_A 254 Disks large homolog 1, maguk P55 subfamily member 4e-17
3uit_A 265 INAD-like protein, maguk P55 subfamily member 5, L 8e-08
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A Length = 254 Back     alignment and structure
 Score = 71.9 bits (175), Expect = 4e-17
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
          +  RAL LLE+Y SKL+   D+QLRS+IERVI IF+S LFQAL+
Sbjct: 6  DTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALI 49


>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A Length = 265 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query81
3lra_A 254 Disks large homolog 1, maguk P55 subfamily member 99.92
1vf6_A83 PALS-1, PALS1-associated tight junction protein; L 96.31
3uit_A 265 INAD-like protein, maguk P55 subfamily member 5, L 95.11
1zl8_A53 LIN-7; heterodimer, alpha helix, scaffold, assembl 89.34
2v9v_A135 Selenocysteine-specific elongation factor; transcr 80.19
>3lra_A Disks large homolog 1, maguk P55 subfamily member protein LIN-7 homolog C; tripartite complex, L27 tetramer, cell junction; 2.95A {Homo sapiens} PDB: 1rso_A Back     alignment and structure
Probab=99.92  E-value=1.3e-25  Score=169.97  Aligned_cols=56  Identities=50%  Similarity=0.665  Sum_probs=54.0

Q ss_pred             hchHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhH
Q psy1883          14 LNYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAIG   69 (81)
Q Consensus        14 ~~~~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~~~~   69 (81)
                      ++++||||||++||+||++|++++|++||++||||||+||||||||||||||||+.
T Consensus         2 ~~~~~~~ral~~l~~y~~~l~~~~d~~l~~~~~~~i~~f~s~lf~~lldi~e~ye~   57 (254)
T 3lra_A            2 VRKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVINIFQSNLFQALIDIQEFYEV   57 (254)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCSSSCTTHHHHHHHHHHHHHSHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999984



>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1 Back     alignment and structure
>3uit_A INAD-like protein, maguk P55 subfamily member 5, LIN-7 homolog B; L27 domain, cell polarization, cell adhesion; 2.05A {Mus musculus} PDB: 1y76_A 1y76_B 1y74_A Back     alignment and structure
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1 Back     alignment and structure
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 81
d1rsoa_60 a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rat 1e-20
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 60 Back     information, alignment and structure

class: All alpha proteins
fold: L27 domain
superfamily: L27 domain
family: L27 domain
domain: Presynaptic protein sap97
species: Rat (Rattus norvegicus) [TaxId: 10116]
 Score = 74.7 bits (184), Expect = 1e-20
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 18 EAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALL 61
          +  RAL LLE+Y SKL+   D+QLRS+IERVI IF+S LFQAL+
Sbjct: 4  DTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQSNLFQALI 47


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query81
d1rsoa_60 Presynaptic protein sap97 {Rat (Rattus norvegicus) 99.96
d1vf6a_58 Associated tight junction protein Pals-1 {Human (H 90.2
d1y74a157 Lin-7 {Mouse (Mus musculus) [TaxId: 10090]} 88.69
d1zl8a150 Lin-7 {Caenorhabditis elegans [TaxId: 6239]} 88.54
>d1rsoa_ a.194.1.1 (A:) Presynaptic protein sap97 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: L27 domain
superfamily: L27 domain
family: L27 domain
domain: Presynaptic protein sap97
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96  E-value=2.8e-30  Score=161.25  Aligned_cols=54  Identities=52%  Similarity=0.695  Sum_probs=52.7

Q ss_pred             chHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Q psy1883          15 NYLEAHRALELLEDYHSKLTDPSDKQLRSAIERVIRIFKSRLFQALLGQLGGAI   68 (81)
Q Consensus        15 ~~~dAhRALeLLE~Y~~kL~~~~D~~Lr~aiervIniFkS~LFqALLDI~e~~~   68 (81)
                      +++||||||++||+||++|++|+|++||++|+||||+|||+||||||||||||+
T Consensus         1 rk~da~RAL~lLe~Y~~~L~~~~D~~lr~~iervI~iFkS~LF~aLlDIqe~YE   54 (60)
T d1rsoa_           1 RKQDTQRALHLLEEYRSKLSQTEDRQLRSSIERVISIFQSNLFQALIDIQEFYE   54 (60)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHCHHHHHHHHHTTSEE
T ss_pred             CchHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999998



>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y74a1 a.194.1.1 (A:17-73) Lin-7 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1zl8a1 a.194.1.1 (A:4-53) Lin-7 {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure