Psyllid ID: psy1909

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90--
Protein Sequence
MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Secondary Structure (PSIPRED)
ccccHHHHHHHccccHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEccccHHHHEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHccEEcc
Coil and Loop (DISEMBL)
mqhkdvldkqsrprdrkedislglkstailfgdktklylsgfggvMMSSLVTCGilsgqtwpYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Flexible Loop (DISEMBL)
mqhkdvldkqsrprdrkedislglkstailfgdKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Low Complexity Region (SEG)
MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Disordered region (IsUnstruct)
*********************LGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFY*
Disordered Region (DISOPRED)
MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Disordered Region (DISEMBL)
*****************EDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Disordered Region (DISPRO)
MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLGLQFYC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	92	2.2.26 [Sep-21-2011]
Q16QL3	441	4-hydroxybenzoate polypre	N/A	N/A	0.760	0.158	0.528	4e-15
Q2KIQ4	371	4-hydroxybenzoate polypre	yes	N/A	0.760	0.188	0.528	1e-14
Q96H96	371	4-hydroxybenzoate polypre	no	N/A	0.760	0.188	0.5	3e-14
Q298G6	397	4-hydroxybenzoate polypre	yes	N/A	0.760	0.176	0.442	7e-13
Q9VHS7	392	4-hydroxybenzoate polypre	yes	N/A	0.760	0.178	0.428	3e-12
Q8I7J4	356	4-hydroxybenzoate polypre	no	N/A	0.760	0.196	0.442	2e-11
Q499N4	374	4-hydroxybenzoate polypre	yes	N/A	0.760	0.187	0.514	5e-10
Q66JT7	374	4-hydroxybenzoate polypre	yes	N/A	0.760	0.187	0.485	1e-09
Q93YP7	407	4-hydroxybenzoate polypre	yes	N/A	0.760	0.171	0.385	5e-08
Q10252	360	4-hydroxybenzoate polypre	yes	N/A	0.75	0.191	0.375	3e-07

>sp|Q16QL3|COQ2_AEDAE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 51/70 (72%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D  LG+KSTAI FGD TKL+LSGF   M+  LV  G++  QTWPY+ ++ +I +H
Sbjct: 299 QDKVDDALLGIKSTAIRFGDNTKLWLSGFSTAMIGGLVASGMVCEQTWPYYSAVGVISAH 358

Query: 74  LASQIYHLDI 83
           LA QIY L+I
Sbjct: 359 LAHQIYSLNI 368

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 3EC: 9

>sp|Q2KIQ4|COQ2_BOVIN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+K+D  +GLKSTA+LF + TK +LSGF   M+ +L   G+ SGQT PY+ +L+ +G+H
Sbjct: 254 QDKKDDALIGLKSTALLFREDTKKWLSGFSVAMLGALSLVGVNSGQTMPYYTALAAVGAH 313

Query: 74  LASQIYHLDI 83
           LA QIY LDI
Sbjct: 314 LAHQIYTLDI 323

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q96H96|COQ2_HUMAN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+++D+ +GLKSTA+ FG+ TK +LSGF   M+ +L   G+ SGQT PY+ +L  +G+H
Sbjct: 254 QDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQTAPYYAALGAVGAH 313

Query: 74  LASQIYHLDI 83
           L  QIY LDI
Sbjct: 314 LTHQIYTLDI 323

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q298G6|COQ2_DROPS 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 50/70 (71%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FG+ TK++LSGF   M++ L T G    QT PY+ ++ ++G+H
Sbjct: 266 QDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSTAGWACDQTLPYYAAVGVVGAH 325

Query: 74  LASQIYHLDI 83
           L  QIY L+I
Sbjct: 326 LVQQIYSLNI 335

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q9VHS7|COQ2_DROME 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 49/70 (70%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FG+ TK++LSGF   M++ L   G    QT PY+ ++ ++G+H
Sbjct: 260 QDKLDDLQIGVKSTALRFGENTKVWLSGFTAAMLTGLSAAGWACDQTVPYYAAVGVVGAH 319

Query: 74  LASQIYHLDI 83
           L  QIY L+I
Sbjct: 320 LVQQIYSLNI 329

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q8I7J4|COQ2_CAEEL 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Caenorhabditis elegans GN=coq-2 PE=2 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 47/70 (67%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +DI +G+KSTA+  G  TK +LS FG   ++SL  CGI S QTWPY+++L+   + 
Sbjct: 245 QDKADDIMIGVKSTALRLGADTKKWLSAFGVGTVASLTACGIASDQTWPYYVALAATTAQ 304

Query: 74  LASQIYHLDI 83
           L  Q+  +DI
Sbjct: 305 LGWQVGTVDI 314

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q499N4|COQ2_RAT 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+K+D  +GLKSTA+LF + TK +LSGFG  M+ +L   G  SGQT PY+ +++ +G+H
Sbjct: 254 QDKKDDALIGLKSTALLFRENTKQWLSGFGVAMVGALSLVGASSGQTLPYYAAVAAVGAH 313

Query: 74  LASQIYHLDI 83
           LA QIY +DI
Sbjct: 314 LAHQIYTVDI 323

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q66JT7|COQ2_MOUSE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 53/70 (75%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+K+D  +GLKSTA+LF + T+ +LSGFG  M+++L   G  +GQT PY+ +++ +G+H
Sbjct: 254 QDKKDDALIGLKSTALLFQENTRQWLSGFGVAMVAALSLAGANNGQTVPYYAAVAAVGAH 313

Query: 74  LASQIYHLDI 83
           LA QIY +DI
Sbjct: 314 LAHQIYTVDI 323

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q93YP7|4HPT_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 42/70 (60%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+++D+ +G+KSTA+ FGD TKL+L+GFG   +  L   G  +   W Y+ SL+     
Sbjct: 307 QDKEDDVKVGVKSTALRFGDNTKLWLTGFGTASIGFLALSGFSADLGWQYYASLAAASGQ 366

Query: 74  LASQIYHLDI 83
           L  QI   D+
Sbjct: 367 LGWQIGTADL 376

Involved in coenzyme Q (CoQ) biosynthesis. Catalyzes the prenylation of para-hydroxybenzoate (PHB) with a polyprenyl group. Required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q10252|COQ2_SCHPO 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coq2 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 3/72 (4%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGS- 72
           +D+++D+   + STA+ FGD TK  L G   + +++L T GI++GQ  P F +L + G+ 
Sbjct: 253 QDKRDDVKANIYSTALRFGDNTKPVLCGLAALQIATLATAGIMNGQG-PVFYTLGVAGAA 311

Query: 73  -HLASQIYHLDI 83
             L+S IY +D+
Sbjct: 312 YRLSSMIYKVDL 323

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
332023983	368	Para-hydroxybenzoate--polyprenyltransfer	0.760	0.190	0.585	2e-17
307179433	339	Para-hydroxybenzoate--polyprenyltransfer	0.760	0.206	0.614	4e-17
328782186	300	PREDICTED: LOW QUALITY PROTEIN: 4-hydrox	0.760	0.233	0.528	1e-16
347972047	438	AGAP004513-PA [Anopheles gambiae str. PE	0.760	0.159	0.542	3e-16
350397487	412	PREDICTED: 4-hydroxybenzoate polyprenylt	0.760	0.169	0.528	4e-16
340715298	410	PREDICTED: 4-hydroxybenzoate polyprenylt	0.760	0.170	0.528	4e-16
307215250	300	Para-hydroxybenzoate--polyprenyltransfer	0.760	0.233	0.528	1e-15
345481641	415	PREDICTED: 4-hydroxybenzoate polyprenylt	0.760	0.168	0.571	3e-15
312380983	484	hypothetical protein AND_06803 [Anophele	0.760	0.144	0.528	1e-14
170043503	315	para-hydroxybenzoate-polyprenyltransfera	0.847	0.247	0.512	1e-14

>gi|332023983|gb|EGI64201.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Acromyrmex echinatior]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +DR +DI +G+KSTAI FG+ TK YLSGFG VM++SL+T GIL+ QTWPY+ ++ LI +H
Sbjct: 239 QDRLDDIRIGIKSTAIKFGEDTKFYLSGFGIVMIASLITSGILTTQTWPYYTTIGLIAAH 298

Query: 74  LASQIYHLDI 83
           + +QIY L+I
Sbjct: 299 INNQIYTLNI 308

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179433|gb|EFN67757.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Camponotus floridanus]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/70 (61%), Positives = 56/70 (80%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +DR +DI LG KSTAI FGD TK YLSGFG VM++SL+T GIL+ QTWPY+ ++ LI  H
Sbjct: 208 QDRVDDILLGTKSTAIKFGDDTKFYLSGFGMVMIASLITSGILTTQTWPYYTAVGLIAIH 267

Query: 74  LASQIYHLDI 83
           +++QIY L+I
Sbjct: 268 ISNQIYTLNI 277

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782186|ref|XP_001120171.2| PREDICTED: LOW QUALITY PROTEIN: 4-hydroxybenzoate polyprenyltransferase, mitochondrial, partial [Apis mellifera]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 58/70 (82%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FGDK+K+YLSGF  VM++ L+  GIL+ QTWPY+ ++ L+G+H
Sbjct: 178 QDKMDDVIIGIKSTALKFGDKSKIYLSGFSTVMITGLIASGILAAQTWPYYTAVGLVGTH 237

Query: 74  LASQIYHLDI 83
           L +QIY+L+I
Sbjct: 238 LVNQIYNLNI 247

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347972047|ref|XP_313812.5| AGAP004513-PA [Anopheles gambiae str. PEST] gi|347972049|ref|XP_003436832.1| AGAP004513-PB [Anopheles gambiae str. PEST] gi|333469147|gb|EAA09225.5| AGAP004513-PA [Anopheles gambiae str. PEST] gi|333469148|gb|EGK97190.1| AGAP004513-PB [Anopheles gambiae str. PEST]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/70 (54%), Positives = 56/70 (80%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FGDKTKL+LSGF   M+ +L+T G++  QTWPY+ S+ LIG+H
Sbjct: 304 QDKVDDLIIGIKSTALRFGDKTKLWLSGFTAAMIGNLLTAGLVCDQTWPYYTSIGLIGAH 363

Query: 74  LASQIYHLDI 83
           LA QI+ L+I
Sbjct: 364 LAHQIHSLNI 373

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397487|ref|XP_003484892.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Bombus impatiens]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 57/70 (81%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FG+KTKLYLSGF  +M++ L+  GIL+ QTWPY+ ++ L+G+H
Sbjct: 286 QDKVDDVIVGIKSTALKFGNKTKLYLSGFSTIMITGLLASGILTAQTWPYYTAVGLVGTH 345

Query: 74  LASQIYHLDI 83
           L +QIY L+I
Sbjct: 346 LVNQIYSLNI 355

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715298|ref|XP_003396153.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Bombus terrestris]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 57/70 (81%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FG+KTKLYLSGF  +M++ L+  GIL+ QTWPY+ ++ L+G+H
Sbjct: 284 QDKVDDVIVGIKSTALKFGNKTKLYLSGFSTIMITGLLASGILTAQTWPYYTAVGLVGTH 343

Query: 74  LASQIYHLDI 83
           L +QIY L+I
Sbjct: 344 LVNQIYSLNI 353

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215250|gb|EFN90004.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Harpegnathos saltator]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 55/70 (78%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +DR +DI LG+KSTAI FG+ TK YLSGF   M++S VT GIL+ QTWPY+ ++ ++ +H
Sbjct: 180 QDRTDDILLGIKSTAIKFGNDTKFYLSGFAVAMLASFVTSGILAAQTWPYYTAVGVLAAH 239

Query: 74  LASQIYHLDI 83
           +++QIY L++
Sbjct: 240 ISNQIYTLNV 249

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481641|ref|XP_001605798.2| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Nasonia vitripennis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 56/70 (80%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ LG+KSTA+ FGDKTKLYL+ FG  M+SSLV  GI + QT+PY++++ L+GSH
Sbjct: 286 QDKIDDVLLGIKSTALKFGDKTKLYLASFGTTMISSLVVSGICADQTFPYYIAVGLVGSH 345

Query: 74  LASQIYHLDI 83
           L  Q+Y LDI
Sbjct: 346 LFHQLYTLDI 355

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380983|gb|EFR26840.1| hypothetical protein AND_06803 [Anopheles darlingi]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+ +D+ +G+KSTA+ FGD TKL+LSGF G MM +L+  G    QTWPY+ S+ LI +H
Sbjct: 133 QDKVDDLLIGIKSTALRFGDNTKLWLSGFTGAMMVNLMAAGAACDQTWPYYTSVGLIAAH 192

Query: 74  LASQIYHLDI 83
           LA QI+ L+I
Sbjct: 193 LAQQIHSLNI 202

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043503|ref|XP_001849425.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus] gi|167866821|gb|EDS30204.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%)

Query: 6   VLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFL 65
           V D     +D+ +D+ LG+KSTAI FGD TKL+L+GF   M+  LV+ GI+  QTWPY+ 
Sbjct: 169 VYDTIYAHQDKVDDVLLGIKSTAIRFGDNTKLWLTGFSTAMLGGLVSSGIVCDQTWPYYS 228

Query: 66  SLSLIGSHLASQIYHLDI 83
           +L +I +HLA QIY L+I
Sbjct: 229 ALGIISAHLAHQIYSLNI 246

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	92
UNIPROTKB|Q16QL3	441	coq2 "4-hydroxybenzoate polypr	0.760	0.158	0.528	5.1e-15
UNIPROTKB|F1N1G6	371	COQ2 "4-hydroxybenzoate polypr	0.760	0.188	0.528	6.6e-15
UNIPROTKB|Q2KIQ4	371	COQ2 "4-hydroxybenzoate polypr	0.760	0.188	0.528	6.6e-15
UNIPROTKB|E2QT06	368	COQ2 "Uncharacterized protein"	0.760	0.190	0.514	1.8e-14
UNIPROTKB|Q96H96	371	COQ2 "4-hydroxybenzoate polypr	0.760	0.188	0.5	1.8e-14
RGD|1306722	374	Coq2 "coenzyme Q2 homolog, pre	0.760	0.187	0.514	1.9e-14
MGI|MGI:1919133	374	Coq2 "coenzyme Q2 homolog, pre	0.760	0.187	0.485	8.7e-14
UNIPROTKB|F1RVD9	371	COQ2 "Uncharacterized protein"	0.760	0.188	0.485	1.8e-13
ZFIN|ZDB-GENE-070410-84	378	coq2 "coenzyme Q2 homolog, pre	0.760	0.185	0.471	1.9e-13
UNIPROTKB|H0YAI0	225	COQ2 "4-hydroxybenzoate polypr	0.771	0.315	0.450	2.1e-13

UNIPROTKB|Q16QL3 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Aedes aegypti (taxid:7159)]

 Score = 197 (74.4 bits), Expect = 5.1e-15, P = 5.1e-15
 Identities = 37/70 (52%), Positives = 51/70 (72%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+ +D  LG+KSTAI FGD TKL+LSGF   M+  LV  G++  QTWPY+ ++ +I +H
Sbjct:   299 QDKVDDALLGIKSTAIRFGDNTKLWLSGFSTAMIGGLVASGMVCEQTWPYYSAVGVISAH 358

Query:    74 LASQIYHLDI 83
             LA QIY L+I
Sbjct:   359 LAHQIYSLNI 368

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

UNIPROTKB|F1N1G6 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+K+D  +GLKSTA+LF + TK +LSGF   M+ +L   G+ SGQT PY+ +L+ +G+H
Sbjct:   254 QDKKDDALIGLKSTALLFREDTKKWLSGFSVAMLGALSLVGVNSGQTMPYYTALAAVGAH 313

Query:    74 LASQIYHLDI 83
             LA QIY LDI
Sbjct:   314 LAHQIYTLDI 323

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

UNIPROTKB|Q2KIQ4 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 194 (73.4 bits), Expect = 6.6e-15, P = 6.6e-15
 Identities = 37/70 (52%), Positives = 52/70 (74%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+K+D  +GLKSTA+LF + TK +LSGF   M+ +L   G+ SGQT PY+ +L+ +G+H
Sbjct:   254 QDKKDDALIGLKSTALLFREDTKKWLSGFSVAMLGALSLVGVNSGQTMPYYTALAAVGAH 313

Query:    74 LASQIYHLDI 83
             LA QIY LDI
Sbjct:   314 LAHQIYTLDI 323

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

UNIPROTKB|E2QT06 COQ2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+++D  +GLKSTA+ F + TK +LSGFG  M+ +L   G+ SGQT PY+ +L+ +G+H
Sbjct:   252 QDKRDDALIGLKSTALRFQENTKQWLSGFGVAMLGALSLVGVNSGQTAPYYTALAAVGAH 311

Query:    74 LASQIYHLDI 83
             LA QIY LDI
Sbjct:   312 LAHQIYTLDI 321

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

UNIPROTKB|Q96H96 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 35/70 (50%), Positives = 51/70 (72%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+++D+ +GLKSTA+ FG+ TK +LSGF   M+ +L   G+ SGQT PY+ +L  +G+H
Sbjct:   254 QDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQTAPYYAALGAVGAH 313

Query:    74 LASQIYHLDI 83
             L  QIY LDI
Sbjct:   314 LTHQIYTLDI 323

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=RCA

GO:0006071 "glycerol metabolic process" evidence=IGI

GO:0016021 "integral to membrane" evidence=RCA

RGD|1306722 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 36/70 (51%), Positives = 52/70 (74%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+K+D  +GLKSTA+LF + TK +LSGFG  M+ +L   G  SGQT PY+ +++ +G+H
Sbjct:   254 QDKKDDALIGLKSTALLFRENTKQWLSGFGVAMVGALSLVGASSGQTLPYYAAVAAVGAH 313

Query:    74 LASQIYHLDI 83
             LA QIY +DI
Sbjct:   314 LAHQIYTVDI 323

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006071 "glycerol metabolic process" evidence=IEA;ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA;ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

MGI|MGI:1919133 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Mus musculus (taxid:10090)]

 Score = 184 (69.8 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 34/70 (48%), Positives = 53/70 (75%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+K+D  +GLKSTA+LF + T+ +LSGFG  M+++L   G  +GQT PY+ +++ +G+H
Sbjct:   254 QDKKDDALIGLKSTALLFQENTRQWLSGFGVAMVAALSLAGANNGQTVPYYAAVAAVGAH 313

Query:    74 LASQIYHLDI 83
             LA QIY +DI
Sbjct:   314 LAHQIYTVDI 323

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006071 "glycerol metabolic process" evidence=ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

UNIPROTKB|F1RVD9 COQ2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+K+D  +GLKSTA+ F + TK +LSGF   M+ +L   G+ S QT PY+++L+ +G+H
Sbjct:   254 QDKKDDALIGLKSTALRFREDTKQWLSGFSVAMLGALSLVGVNSDQTAPYYIALAAVGAH 313

Query:    74 LASQIYHLDI 83
             LA Q+Y LDI
Sbjct:   314 LAHQVYTLDI 323

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

ZFIN|ZDB-GENE-070410-84 coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 33/70 (47%), Positives = 51/70 (72%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+ +D+ +G+KSTA+ F + TKL+LSGF G M+S L+  G+ + QT PY+ ++S +  H
Sbjct:   262 QDKDDDLKVGVKSTALRFQENTKLWLSGFTGAMLSGLLLAGVNADQTAPYYCAVSAVALH 321

Query:    74 LASQIYHLDI 83
             LA QIY +DI
Sbjct:   322 LAHQIYSVDI 331

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|H0YAI0 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 32/71 (45%), Positives = 51/71 (71%)

Query:    14 RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
             +D+++D+ +GLKSTA+ FG+ TK +LSGF   M+ +L   G+ SGQT PY+ +L  +G+H
Sbjct:   151 QDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQTAPYYAALGAVGAH 210

Query:    74 LASQIYHLDIV 84
             L  Q + L+I+
Sbjct:   211 LTHQKWGLEIL 221

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2KIQ4	COQ2_BOVIN	2, ., 5, ., 1, ., 3, 9	0.5285	0.7608	0.1886	yes	N/A
Q499N4	COQ2_RAT	2, ., 5, ., 1, ., 3, 9	0.5142	0.7608	0.1871	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	92
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	5e-17
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	6e-17
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	1e-10
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	2e-10
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	1e-08
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	9e-08
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	7e-07
PRK12873	294	PRK12873, ubiA, prenyltransferase; Reviewed	0.004

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 72.7 bits (179), Expect = 5e-17
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHL 74
           D+++DI +G+KSTA+ FGD TK +L G   +M+  L   G+++G    Y+L L+     L
Sbjct: 184 DKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGLAAAALLL 243

Query: 75  ASQIYHLDI 83
             QI  LDI
Sbjct: 244 IRQIATLDI 252

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 72.4 bits (178), Expect = 6e-17
 Identities = 30/70 (42%), Positives = 46/70 (65%)

Query: 14  RDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSH 73
           +D+++D+ +G+KSTA+ FGD TKL+L+GFG   +  L   G  +G  WPY+  L+    H
Sbjct: 189 QDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYYAGLAAAAGH 248

Query: 74  LASQIYHLDI 83
           LA QI  +D+
Sbjct: 249 LAWQIQTVDL 258

Length = 289

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHL 74
           DR +D+ +G+KSTAILFG   KL +       ++ L   G L G  W Y+  L +  +  
Sbjct: 186 DRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWGLLVAAALF 245

Query: 75  ASQIYHL 81
             Q   L
Sbjct: 246 VYQ-QKL 251

Length = 282

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 28/69 (40%), Positives = 39/69 (56%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHL 74
           D+++D  +G+KSTA LFGD TK +L  F G+ +  +     L+G      L L    +HL
Sbjct: 216 DKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGVPLLALLGLLAAAAHL 275

Query: 75  ASQIYHLDI 83
           A QI  LDI
Sbjct: 276 AWQIARLDI 284

Length = 314

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 18/67 (26%), Positives = 33/67 (49%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHL 74
           DR++D+ +G+ S+AI FG      +  F  + +  L   G+L     P+++ L++     
Sbjct: 190 DREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWIGLAIAAVLW 249

Query: 75  ASQIYHL 81
           A Q   L
Sbjct: 250 ARQYRRL 256

Length = 290

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 47.2 bits (113), Expect = 9e-08
 Identities = 21/69 (30%), Positives = 37/69 (53%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHL 74
           D+K+D+ +G+KSTAI FG+KT+ Y+     + +   +  GI+S     ++L++       
Sbjct: 189 DKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAILAAAGIF 248

Query: 75  ASQIYHLDI 83
             Q   LD 
Sbjct: 249 YYQYKLLDF 257

Length = 285

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWP-YFLSLSLIGSH 73
           D + D   GLKS  +LFG K  L L+    +  + LV  G+L+G     Y L L +    
Sbjct: 191 DIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALL 250

Query: 74  LASQIYHLDI 83
           L  QI  +D+
Sbjct: 251 LLYQILIVDV 260

Length = 289

>gnl|CDD|171787 PRK12873, ubiA, prenyltransferase; Reviewed

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 21/95 (22%)

Query: 15  DRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQT---WPYFL------ 65
           DR++D  +GL S+A+  G      +     +    L     ++      WP++L      
Sbjct: 194 DRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQVGFIFWPFWLIASIGM 253

Query: 66  ------------SLSLIGSHLASQIYHLDIVFLGL 88
                       S+  IG+H ++Q+    ++ LGL
Sbjct: 254 QRDILKLFPEKQSIKTIGNHFSNQVILGSLLLLGL 288

Length = 294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	92
KOG1381|consensus	353		99.95
PRK12895	286	ubiA prenyltransferase; Reviewed	99.92
PRK12873	294	ubiA prenyltransferase; Reviewed	99.9
PRK13106	300	ubiA prenyltransferase; Reviewed	99.87
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.87
PRK12876	300	ubiA prenyltransferase; Reviewed	99.84
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.84
PRK12888	284	ubiA prenyltransferase; Reviewed	99.84
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.74
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.72
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.72
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.7
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.7
PRK12874	291	ubiA prenyltransferase; Reviewed	99.69
PRK12886	291	ubiA prenyltransferase; Reviewed	99.68
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.66
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.56
PRK12871	297	ubiA prenyltransferase; Reviewed	99.55
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.5
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.46
PRK12884	279	ubiA prenyltransferase; Reviewed	99.4
PRK13595	292	ubiA prenyltransferase; Provisional	99.35
PRK12882	276	ubiA prenyltransferase; Reviewed	99.34
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	99.33
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	99.26
PRK12875	282	ubiA prenyltransferase; Reviewed	99.21
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.13
PRK13105	282	ubiA prenyltransferase; Reviewed	99.07
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	99.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.99
PRK12872	285	ubiA prenyltransferase; Reviewed	98.9
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	98.88
PLN02776	341	prenyltransferase	98.82
PRK13362	306	protoheme IX farnesyltransferase; Provisional	98.81
PLN00012	375	chlorophyll synthetase; Provisional	98.81
PRK05951	296	ubiA prenyltransferase; Reviewed	98.79
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	98.62
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	98.59
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	98.01
PLN02878	280	homogentisate phytyltransferase	97.48
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	97.4
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	97.36
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	97.34
PRK13591	307	ubiA prenyltransferase; Provisional	97.21
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	97.18
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	97.12
PLN02922	315	prenyltransferase	96.87
PRK13592	299	ubiA prenyltransferase; Provisional	93.26

>KOG1381|consensus

Probab=99.95  E-value=1.6e-28  Score=182.66  Aligned_cols=87  Identities=41%  Similarity=0.725  Sum_probs=84.9

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      .+||+.||||||||||+||+|+||||+|++||+++|+++..+.+.++..+..+|..++++|+||+++++.+.++.+|++.
T Consensus       234 v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~La~aG~~s~q~~pyy~~lg~~~~~L~~~i~~  313 (353)
T KOG1381|consen  234 VCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASLAAAGIASDQTWPYYAALGAVAARLGSQIYK  313 (353)
T ss_pred             hhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHhheee
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCcc
Q psy1909          81 LDIVFLG   87 (92)
Q Consensus        81 ~~~~~~~   87 (92)
                      +|+||.+
T Consensus       314 vdiDnp~  320 (353)
T KOG1381|consen  314 VDIDNPS  320 (353)
T ss_pred             eecCChH
Confidence            9999876

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.92  E-value=3.6e-25  Score=164.93  Aligned_cols=86  Identities=21%  Similarity=0.033  Sum_probs=78.9

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIY   79 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~   79 (92)
                      ++|+++|||+||+||+|||+|+|+||+|++||++++. +...+++.++.++...|...+ +++||+++++.+.+++|||.
T Consensus       169 ~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~-~~~y~~~~~~~~~~l~~q~~  247 (286)
T PRK12895        169 SLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR-TLWYLAALIIIYTLVIYQHL  247 (286)
T ss_pred             HHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999999988765 556899999999999998887 89999999999999999999


Q ss_pred             HhccCCcc
Q psy1909          80 HLDIVFLG   87 (92)
Q Consensus        80 ~~~~~~~~   87 (92)
                      ++|++|.+
T Consensus       248 ~~~~~~~~  255 (286)
T PRK12895        248 IIDPRNPI  255 (286)
T ss_pred             HhcCCCHH
Confidence            99988764

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.90  E-value=6.8e-24  Score=158.74  Aligned_cols=86  Identities=14%  Similarity=0.093  Sum_probs=82.4

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      ++|+.+|||+||+||+|||+|+|+||+|+++|++++.++..+|+.+++++..+|+..++|++||+++++.+.++.+||..
T Consensus       180 ~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll~~~g~~~~l~~~y~~~~~~~~~~l~~~~~~  259 (294)
T PRK12873        180 LLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFLALAAFIAQVGFIFWPFWLIASIGMQRDILK  259 (294)
T ss_pred             HHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      +|+++.
T Consensus       260 ~~~~~~  265 (294)
T PRK12873        260 LFPEKQ  265 (294)
T ss_pred             hCcCcc
Confidence            998764

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.87  E-value=2e-22  Score=150.90  Aligned_cols=84  Identities=15%  Similarity=0.038  Sum_probs=80.2

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      ++|+++|||+|++||+|||+|.|+||+|++||++++.++..++..+++++...|+..++|++||+++.+...++.+|+..
T Consensus       187 ~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G~~a~~~~~~~~~~~v~l~~~~~~~~~lg~~y~~~~~~~~~~l~~~~~~  266 (300)
T PRK13106        187 ILWAAGFDLYNHIPDAEFDREMGLHSFAVVLGKWALTFAGLNQLFSVVLDLLGDLYYGLGPIAIAATILHGLIMAYAYYL  266 (300)
T ss_pred             HHHHHHHHHHHHccchhhHHHCCCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             hccC
Q psy1909          81 LDIV   84 (92)
Q Consensus        81 ~~~~   84 (92)
                      ++++
T Consensus       267 ~~~~  270 (300)
T PRK13106        267 ASKK  270 (300)
T ss_pred             hCCc
Confidence            8876

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.87  E-value=3.1e-22  Score=149.12  Aligned_cols=86  Identities=37%  Similarity=0.637  Sum_probs=80.9

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL   81 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~   81 (92)
                      +|+.+|||+||+||+|||+|.|+||+|+++|++++.++..++..+..++..+|+..+++++||+++.+.+.++.+|+..+
T Consensus       177 ~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~v  256 (289)
T PLN02809        177 CWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLALSGYNAGLGWPYYAGLAAAAGHLAWQIQTV  256 (289)
T ss_pred             HHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHc
Confidence            69999999999999999999999999999999988888889999999999999999999999999999999999999999


Q ss_pred             ccCCcc
Q psy1909          82 DIVFLG   87 (92)
Q Consensus        82 ~~~~~~   87 (92)
                      |+++.+
T Consensus       257 ~~~~~~  262 (289)
T PLN02809        257 DLSSRA  262 (289)
T ss_pred             CCCCHH
Confidence            987653

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=3.6e-21  Score=144.49  Aligned_cols=82  Identities=20%  Similarity=0.075  Sum_probs=68.1

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHHHH-HHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK-LYLSGFGGVMMSSLVTCGILSGQTWPYFL-SLSLIGSHL-ASQI   78 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~l~~~~~~l-~~q~   78 (92)
                      +|+++|||+||+||+|||+|.|+||+|++||+++. .++..++..+++++..+|+..+++++||. ++++.+..+ .+||
T Consensus       183 ~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~~l~~~~~  262 (300)
T PRK12876        183 MIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTVILKTIKH  262 (300)
T ss_pred             HHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            57779999999999999999999999999998764 67889999999999999999999988554 665444444 4555


Q ss_pred             -HHhcc
Q psy1909          79 -YHLDI   83 (92)
Q Consensus        79 -~~~~~   83 (92)
                       ++++.
T Consensus       263 ~~~~~~  268 (300)
T PRK12876        263 YSLIDK  268 (300)
T ss_pred             HHHcCC
Confidence             77743

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.84  E-value=4.7e-21  Score=142.53  Aligned_cols=86  Identities=23%  Similarity=0.324  Sum_probs=79.9

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      .+|+.++|++||+||+|||+|.|+||+|+++|+++...+..++..+..++..+|+..|++++||+++++...++.+|+..
T Consensus       176 ~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~  255 (290)
T PRK12870        176 VFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILGVLLELHLPFWIGLAIAAVLWARQYRR  255 (290)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999998888888999999999999999999999999999999999999999


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      +++|+.
T Consensus       256 ~~~~~~  261 (290)
T PRK12870        256 LRQANL  261 (290)
T ss_pred             hcccCC
Confidence            966544

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=4.1e-21  Score=142.69  Aligned_cols=87  Identities=16%  Similarity=0.117  Sum_probs=80.1

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK-LYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~-~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.++|++|++||+|||+|.|+||+|+++|++.. .+...++..+.+++...|...+++++||+++++.+.+++||++.
T Consensus       170 ~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~~~~~~~~~~l~~~~~~  249 (284)
T PRK12888        170 LWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWWIGLAITAGAFAYEHAI  249 (284)
T ss_pred             HHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999998754 45778999999999999999999999999999999999999999


Q ss_pred             hccCCccc
Q psy1909          81 LDIVFLGL   88 (92)
Q Consensus        81 ~~~~~~~~   88 (92)
                      +|+++.++
T Consensus       250 ~~~~~~~~  257 (284)
T PRK12888        250 VSPTDLSR  257 (284)
T ss_pred             cCccCHHH
Confidence            99987653

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.74  E-value=1e-17  Score=123.93  Aligned_cols=85  Identities=28%  Similarity=0.353  Sum_probs=78.6

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL   81 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~   81 (92)
                      +|+..+|++||+||+|||+|.|+||+|+++|++....+..++..+..++...++..++++.|++++++....+.+|+..+
T Consensus       173 ~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~  252 (282)
T PRK12848        173 LWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWAGWLLGLGWAYYWGLLVAAALFVYQQKLI  252 (282)
T ss_pred             HHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHc
Confidence            79999999999999999999999999999998877777788999999999999999999999999999999999999998


Q ss_pred             ccCCc
Q psy1909          82 DIVFL   86 (92)
Q Consensus        82 ~~~~~   86 (92)
                      |.++.
T Consensus       253 ~~~~~  257 (282)
T PRK12848        253 RDRER  257 (282)
T ss_pred             CCCCH
Confidence            87654

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.72  E-value=1.7e-17  Score=122.77  Aligned_cols=86  Identities=34%  Similarity=0.454  Sum_probs=78.3

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      .+|+.++|++|++||+|||+|.|+||+|+++|++...+...++..+..++...++..+.+++|++++.+....+.+|+..
T Consensus       170 ~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~  249 (281)
T TIGR01474       170 ILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAGLGPVYYLGLAAAALLLIRQIAT  249 (281)
T ss_pred             HHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999888888888899988888999999999999999988899999999998


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      +++++.
T Consensus       250 ~~~~~~  255 (281)
T TIGR01474       250 LDIRDP  255 (281)
T ss_pred             hCCCCH
Confidence            876543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.72  E-value=2.7e-17  Score=121.58  Aligned_cols=85  Identities=26%  Similarity=0.297  Sum_probs=76.2

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHh
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHL   81 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~   81 (92)
                      +|+.++|++||+||+|||+|.|+||+|+++|++.......+...+..++..+++..|.+++||.++.+...++.+|+..+
T Consensus       176 ~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~  255 (285)
T PRK12847        176 FWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFYLAILAAAGIFYYQYKLL  255 (285)
T ss_pred             HHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            79999999999999999999999999999998877777777788888888899999999999988777788999999999


Q ss_pred             ccCCc
Q psy1909          82 DIVFL   86 (92)
Q Consensus        82 ~~~~~   86 (92)
                      |+++.
T Consensus       256 ~~~~~  260 (285)
T PRK12847        256 DFDNP  260 (285)
T ss_pred             CCCCH
Confidence            87764

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.70  E-value=4.5e-17  Score=122.56  Aligned_cols=86  Identities=34%  Similarity=0.341  Sum_probs=76.6

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      ++|+.++|++|++||+|||+|.|+||+|+++|++....+..++.....++..++...++++.|+++++.....+.+|+..
T Consensus       202 ~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  281 (314)
T PRK12878        202 IAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLLMGLAFWLAGVPLLALLGLLAAAAHLAWQIAR  281 (314)
T ss_pred             HHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            37999999999999999999999999999999987777778888888888888888899999988877777889999999


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      +|+++.
T Consensus       282 ~~~~~~  287 (314)
T PRK12878        282 LDIDDP  287 (314)
T ss_pred             cccCCh
Confidence            876654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.70  E-value=3.9e-17  Score=120.85  Aligned_cols=87  Identities=29%  Similarity=0.222  Sum_probs=76.3

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTW-PYFLSLSLIGSHLASQIY   79 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~-~~~~~l~~~~~~l~~q~~   79 (92)
                      ++|++++|++|++||+|+|++.|+||+|+.||+++...+..+.....+++..+++..+... +|+.++...+..+.+|+.
T Consensus       177 ~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (289)
T COG0382         177 ILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLGLIYLLGLLVAALLLLYQIL  256 (289)
T ss_pred             HHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999999999999999988777766666688888888899988886 788899999999999999


Q ss_pred             HhccCCcc
Q psy1909          80 HLDIVFLG   87 (92)
Q Consensus        80 ~~~~~~~~   87 (92)
                      .++.++.+
T Consensus       257 ~~~~~~~~  264 (289)
T COG0382         257 IVDVRDPP  264 (289)
T ss_pred             HhcccChH
Confidence            99876543

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=7.7e-17  Score=120.19  Aligned_cols=84  Identities=17%  Similarity=0.047  Sum_probs=74.6

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.++|++|++||+|||+|.|+||+|+++|++. ......++..+.+++...+...+.++.+++++.+.+.++.+|++.
T Consensus       178 ~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  257 (291)
T PRK12874        178 FWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLGLFAYLGVIVSALILLYEHYL  257 (291)
T ss_pred             HHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999775 445678888888888888888888888889999999999999999


Q ss_pred             hccCC
Q psy1909          81 LDIVF   85 (92)
Q Consensus        81 ~~~~~   85 (92)
                      ++.++
T Consensus       258 ~~~~~  262 (291)
T PRK12874        258 VRKDF  262 (291)
T ss_pred             hcCCC
Confidence            86543

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.68  E-value=1.7e-16  Score=118.25  Aligned_cols=85  Identities=22%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.++|++||+||+|||+|.|+||+|+++|++... ....++..++.+....+...+.++.|+++..+....+.+|++.
T Consensus       173 lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~  252 (291)
T PRK12886        173 FWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGPWFLAGLAVTGILLLYEHWL  252 (291)
T ss_pred             HHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999987544 4557888888888888988999999998877788888899999


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      ++++|.
T Consensus       253 ~~~~~~  258 (291)
T PRK12886        253 LRGGDL  258 (291)
T ss_pred             hCCCCh
Confidence            987763

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.66  E-value=3.6e-16  Score=115.33  Aligned_cols=85  Identities=25%  Similarity=0.154  Sum_probs=76.6

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFG-DKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.++|++|++||+|+|+|.|+||+|+++| ++++.....++..++.++...+...+.|+.|+++..+....+.+|++.
T Consensus       169 ~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~y~~~~~~~~~~l~~~~~~  248 (282)
T TIGR01475       169 FWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYIALLALILIGLILAYEHYI  248 (282)
T ss_pred             HHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999999 557777888888999888899999999999998877777889999999


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      +++++.
T Consensus       249 ~~~~~~  254 (282)
T TIGR01475       249 VDPGDQ  254 (282)
T ss_pred             cCCCCH
Confidence            987765

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.56  E-value=7.3e-15  Score=111.52  Aligned_cols=82  Identities=16%  Similarity=0.046  Sum_probs=71.8

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYL-SGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.++|++|++||+|+|+|.|+||+|++||++....+ ..++..+.+++...++..++++.+|..+.+.+.++.+|.++
T Consensus       191 l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~l  270 (331)
T PRK12392        191 FMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFTVLMYFILVGLVLNIVIQIQL  270 (331)
T ss_pred             HHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999998755444 44445888888899999999999999988888999999987


Q ss_pred             hcc
Q psy1909          81 LDI   83 (92)
Q Consensus        81 ~~~   83 (92)
                      .|.
T Consensus       271 ~r~  273 (331)
T PRK12392        271 YRD  273 (331)
T ss_pred             HhC
Confidence            653

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.55  E-value=6e-15  Score=110.43  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWP-YFLSLSLIGSHLASQIY   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~l~~~~~~l~~q~~   79 (92)
                      +|+..+|++|+++|+|||+|.|+||+|+++|++ ++.++..+....+  +..++...+.|+. +|..+.+.+.++.+|.+
T Consensus       186 ~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~--l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  263 (297)
T PRK12871        186 PWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHF--LAAIFFLRELGPIALYGFLAGFVLLAGANLY  263 (297)
T ss_pred             HHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999977 5556655544444  4455677788877 44555778888999999


Q ss_pred             HhccCCccc
Q psy1909          80 HLDIVFLGL   88 (92)
Q Consensus        80 ~~~~~~~~~   88 (92)
                      +.+.++.+.
T Consensus       264 ~~~~~~~~~  272 (297)
T PRK12871        264 LWKEKSQDA  272 (297)
T ss_pred             HhcCCCHHH
Confidence            998876644

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.50  E-value=5e-14  Score=104.93  Aligned_cols=85  Identities=11%  Similarity=-0.062  Sum_probs=66.8

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHH-HHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSG-QTWPYFL-SLSLIGSHLASQIY   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~-~l~~~~~~l~~q~~   79 (92)
                      +|+.++|++|+++|+|||+|.|+||+|+++|++....+..++....+.+..++...+ .|+.|++ ++...+..+.+|++
T Consensus       178 lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~  257 (296)
T PRK04375        178 LWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLLGAWFLYYAWR  257 (296)
T ss_pred             HHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999977545554555444444455555544 7899987 57777888889999


Q ss_pred             HhccCCc
Q psy1909          80 HLDIVFL   86 (92)
Q Consensus        80 ~~~~~~~   86 (92)
                      .+++++.
T Consensus       258 ~~~~~~~  264 (296)
T PRK04375        258 LYRKDDR  264 (296)
T ss_pred             HhcCcCH
Confidence            9987654

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.46  E-value=1.5e-13  Score=101.25  Aligned_cols=83  Identities=10%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHH-HHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY-LSGFGGVMMSSLVTCGILSGQTWPYF-LSLSLIGSHLASQIY   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~-~~l~~~~~~l~~q~~   79 (92)
                      +|+..+|+.|++||+|||+|.|+||+|+++|++.... ....+...+.+....+...+.|+.|+ .++...+..+.+|++
T Consensus       169 ~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~  248 (280)
T TIGR01473       169 LWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGWLYLIVATLLGALFLYLAFK  248 (280)
T ss_pred             HHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999775444 44444554554444466677899999 578788888999999


Q ss_pred             HhccC
Q psy1909          80 HLDIV   84 (92)
Q Consensus        80 ~~~~~   84 (92)
                      ..+++
T Consensus       249 ~~~~~  253 (280)
T TIGR01473       249 FYRDP  253 (280)
T ss_pred             HhcCC
Confidence            98776

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.40  E-value=8.5e-13  Score=96.88  Aligned_cols=84  Identities=12%  Similarity=-0.049  Sum_probs=64.7

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH-H
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI-Y   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~-~   79 (92)
                      +|+.+.|++|++||+|||+|.|+||+|+++|++. ......++..+..+....+.....+++|++...+....+.+|+ +
T Consensus       166 ~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~~  245 (279)
T PRK12884        166 LMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNILYLAPVLVADLIFLYSAYS  245 (279)
T ss_pred             HHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999999999999999999999764 4445555665555544444455567888877778888888886 5


Q ss_pred             HhccCC
Q psy1909          80 HLDIVF   85 (92)
Q Consensus        80 ~~~~~~   85 (92)
                      ..+.++
T Consensus       246 ~~~~~~  251 (279)
T PRK12884        246 LLRSQD  251 (279)
T ss_pred             HhcCCC
Confidence            666554

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.35  E-value=2.3e-12  Score=96.76  Aligned_cols=73  Identities=21%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             CcchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909           1 MQHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIY   79 (92)
Q Consensus         1 ~~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~   79 (92)
                      ++|++++|++|++||.|+||+.|+||+|+++|++ +.++...+.++...++...      +++....+.+....+..+.+
T Consensus       179 ~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~~  252 (292)
T PRK13595        179 MAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLWPV------SRLTALALWLICGGMALALW  252 (292)
T ss_pred             HHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHHHh------cchHHHHHHHHHHHHHHHHh
Confidence            3799999999999999999999999999999965 6677777777777777664      35555545555555555544

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=99.34  E-value=4.1e-12  Score=93.44  Aligned_cols=84  Identities=19%  Similarity=0.098  Sum_probs=59.1

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHH-HHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHH-HHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY-LSGFGGVMMSSLVTCGI-LSGQTWPYFLSLSLI-GSHLASQI   78 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~-~~~~~~~~~~~l~~~g~-~~~~~~~~~~~l~~~-~~~l~~q~   78 (92)
                      +|+.++|++|++||+|+|+|.|+||+|+++|++.... ...++...+. +...++ ..+.++.|++...+. ...+.++.
T Consensus       168 l~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~  246 (276)
T PRK12882        168 LATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVA-ASPLPYLLSTFGLWYLVLVAPADLVMLAAAY  246 (276)
T ss_pred             HHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999765444 4444444443 333333 456788888765444 44444567


Q ss_pred             HHhccCCc
Q psy1909          79 YHLDIVFL   86 (92)
Q Consensus        79 ~~~~~~~~   86 (92)
                      +..+.++.
T Consensus       247 ~~~~~~~~  254 (276)
T PRK12882        247 RSLKKTDP  254 (276)
T ss_pred             HHHcCCCH
Confidence            77766554

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=99.33  E-value=4.8e-12  Score=95.15  Aligned_cols=85  Identities=8%  Similarity=-0.043  Sum_probs=65.7

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHH--HHHHcCCcHHHH-HHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVT--CGILSGQTWPYF-LSLSLIGSHLASQ   77 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~-~~l~~~~~~l~~q   77 (92)
                      +|+.++|++|+.+|+|+|++.|+||+|+++|++ +......+.....+++..  ++...+.++.++ .+..+.+.++.+|
T Consensus       193 ~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (308)
T PRK12887        193 VFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWR  272 (308)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999999999976 444444444444333333  334455677777 6888999999999


Q ss_pred             HHHhccCCc
Q psy1909          78 IYHLDIVFL   86 (92)
Q Consensus        78 ~~~~~~~~~   86 (92)
                      .+.+|.++.
T Consensus       273 ~~~~~~~~~  281 (308)
T PRK12887        273 SQRVDLQDK  281 (308)
T ss_pred             HhhcCcccc
Confidence            999998754

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=99.26  E-value=1.2e-11  Score=91.14  Aligned_cols=83  Identities=10%  Similarity=-0.037  Sum_probs=59.3

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHH-H
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSG-QTWPYFLSLSLIGSHLASQ-I   78 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~l~~~~~~l~~q-~   78 (92)
                      +|+.++|++|.+||+|+|++.|+||+|+++|++. ......++...+.+ ....+..+ .++.|+++..+....+.++ .
T Consensus       165 ~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~y~~~~~~~~~~~l~~~~  243 (279)
T PRK09573        165 FSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVL-SPLPYFLGIFGIYYLIVVIICDILFIIAML  243 (279)
T ss_pred             HHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            6999999999999999999999999999999664 44444444444443 33444444 6888887766666677777 4


Q ss_pred             HHhccCC
Q psy1909          79 YHLDIVF   85 (92)
Q Consensus        79 ~~~~~~~   85 (92)
                      +..+.++
T Consensus       244 ~~~~~~~  250 (279)
T PRK09573        244 ILLKNPS  250 (279)
T ss_pred             HHHcCCC
Confidence            4555443

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.21  E-value=2.2e-11  Score=90.75  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCC
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQ   59 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~   59 (92)
                      +|+.++|++|++||+|+|+|.|+||+|+++|++ ++.+...++..+.+++..++...+.
T Consensus       176 l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~~~~~~  234 (282)
T PRK12875        176 LWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVDLRLGA  234 (282)
T ss_pred             HHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999999976 6678899999999999998765544

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.13  E-value=1.4e-10  Score=85.82  Aligned_cols=83  Identities=12%  Similarity=-0.017  Sum_probs=63.2

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH-HHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLS-LIGSHLASQIY   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~-~~~~~l~~q~~   79 (92)
                      +|+.+..-..+.+|+|||+|.|+||+|+++|++ ++..+..+++.++.+....+. .+.|+.|+++.. ..+..+.+|.+
T Consensus       170 ~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~~y~~~~~~~~~~~l~~~~~  248 (279)
T PRK12869        170 LWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGLIGLILVAILSAALMATSIR  248 (279)
T ss_pred             HHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHH
Confidence            477777544566999999999999999999965 666778888888887777776 788999987654 45556667776


Q ss_pred             HhccCC
Q psy1909          80 HLDIVF   85 (92)
Q Consensus        80 ~~~~~~   85 (92)
                      ..+.++
T Consensus       249 ~~~~~~  254 (279)
T PRK12869        249 ALLNPT  254 (279)
T ss_pred             HhhCCC
Confidence            666443

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.07  E-value=4.7e-10  Score=83.78  Aligned_cols=54  Identities=15%  Similarity=0.084  Sum_probs=48.0

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGI   55 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~   55 (92)
                      +|++++|.+|++||.|.|++.|+||.|+++|++ +..+...++....+++...+.
T Consensus       171 ~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~~  225 (282)
T PRK13105        171 LWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALPW  225 (282)
T ss_pred             HHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            699999999999999999999999999999955 677888899998888876553

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=99.00  E-value=1.4e-09  Score=79.98  Aligned_cols=83  Identities=16%  Similarity=0.062  Sum_probs=56.6

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+...+.+|..||+|+|+|.|+||+|+++|++. +.....++...+ .........+.++.|+..+...+..+..+.+.
T Consensus       165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~-~~~~l~~~~~~~~~y~~~~~~~~~~l~~~~~~  243 (277)
T PRK12883        165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTV-IASFLPVKAGIGLGYLPIIIVDAIILYAAYLV  243 (277)
T ss_pred             HHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHH-HHHHHHHHHcccHHHHHHHHHHHHHHHHHHHH
Confidence            3667788889999999999999999999999774 443333333322 22233445566777777665666666677767


Q ss_pred             hccCC
Q psy1909          81 LDIVF   85 (92)
Q Consensus        81 ~~~~~   85 (92)
                      .+.++
T Consensus       244 ~~~~~  248 (277)
T PRK12883        244 LRNPD  248 (277)
T ss_pred             HhCcc
Confidence            66544

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=98.99  E-value=9e-10  Score=81.45  Aligned_cols=82  Identities=16%  Similarity=0.026  Sum_probs=61.6

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+...++++.++|+|+|++.|.||.|+++|++ ++.+...+.....++.........+++.+..++ +..-...++.+.
T Consensus       179 l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~ll~l-l~~p~~~~~~~~  257 (293)
T PRK06080        179 LLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASPWGLLFL-LSLPLAVKAARP  257 (293)
T ss_pred             HHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHH
Confidence            689999999999999999999999999999976 577778888887777777666665655544433 333455666665


Q ss_pred             hccC
Q psy1909          81 LDIV   84 (92)
Q Consensus        81 ~~~~   84 (92)
                      ...+
T Consensus       258 ~~~~  261 (293)
T PRK06080        258 VLRK  261 (293)
T ss_pred             HHhc
Confidence            5433

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=98.90  E-value=7.5e-09  Score=75.99  Aligned_cols=85  Identities=16%  Similarity=0.051  Sum_probs=62.8

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+...+.++..+|+|.|+|.|+|+.|+++|++ ++.....++......+.........++.++..+......+.+++..
T Consensus       172 l~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (285)
T PRK12872        172 LKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLLLLLAYVLYYIIKL  251 (285)
T ss_pred             HHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            456677888889999999999999999999965 7778888888877777765554444444555566666667677777


Q ss_pred             hccCCc
Q psy1909          81 LDIVFL   86 (92)
Q Consensus        81 ~~~~~~   86 (92)
                      .+.++.
T Consensus       252 ~~~~~~  257 (285)
T PRK12872        252 FAADDK  257 (285)
T ss_pred             Hhcccc
Confidence            655544

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=98.88  E-value=5e-09  Score=78.84  Aligned_cols=81  Identities=16%  Similarity=0.117  Sum_probs=49.5

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHH-HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYL-SGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYH   80 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~   80 (92)
                      +|+.+.|+++.++|+|+|++.|+||+|+++|++....+ ..+.....++........+..+.++.........+.+|...
T Consensus       200 l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  279 (314)
T PRK07566        200 LGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRL  279 (314)
T ss_pred             HHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Confidence            57888999999999999999999999999998754433 33333222222111111233333234444455555666555


Q ss_pred             hc
Q psy1909          81 LD   82 (92)
Q Consensus        81 ~~   82 (92)
                      .+
T Consensus       280 ~~  281 (314)
T PRK07566        280 LR  281 (314)
T ss_pred             hh
Confidence            43

>PLN02776 prenyltransferase

Probab=98.82  E-value=9.8e-09  Score=78.65  Aligned_cols=85  Identities=11%  Similarity=-0.148  Sum_probs=64.0

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHH--hccchHH-HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAIL--FGDKTKL-YLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI   78 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~--fG~~~~~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~   78 (92)
                      +|+..+|+.||++|+|||++.|++++|+.  +|+++.. ++...+..+.+++...+.-....+.++.++++.+..+.+++
T Consensus       162 ~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~~~~~~a~~l~~~~l~~~~  241 (341)
T PLN02776        162 FWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSSPFALEAALLTAYLAASAA  241 (341)
T ss_pred             HHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999983  5666654 44555666666665555444333444467888888899999


Q ss_pred             HHhccCCc
Q psy1909          79 YHLDIVFL   86 (92)
Q Consensus        79 ~~~~~~~~   86 (92)
                      +.+++++.
T Consensus       242 ~~~~~~~~  249 (341)
T PLN02776        242 SFYREPTN  249 (341)
T ss_pred             HHhcCCCh
Confidence            99977654

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=98.81  E-value=1.2e-08  Score=76.82  Aligned_cols=65  Identities=8%  Similarity=-0.088  Sum_probs=48.9

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCC-cHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQ-TWPYFLS   66 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~   66 (92)
                      +|+..+|+.+|++|+|||+|.|+||.|+.+|++.......++....+.+....+..|. |+.|.+.
T Consensus       181 ~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l~~~~g~~g~~y~~~  246 (306)
T PRK13362        181 LWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTALLPLAGYTGIGYLAV  246 (306)
T ss_pred             HHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence            7999999999999999999999999999999764444555555555555555555554 5656543

>PLN00012 chlorophyll synthetase; Provisional

Probab=98.81  E-value=1.3e-08  Score=78.69  Aligned_cols=79  Identities=23%  Similarity=0.282  Sum_probs=53.4

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGFGGVMMSSLVTCGILSGQTWPYFL--SLSLIGSHLASQIY   79 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~l~~~~~~l~~q~~   79 (92)
                      +|+.+.++++.++|+|+|+|.|+||+|+++|++...++.. ....+..+..+++..+.+.++|.  .+......+.+|.+
T Consensus       263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~-~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~~~  341 (375)
T PLN00012        263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV-GSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFK  341 (375)
T ss_pred             HHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            6888999999999999999999999999999765444433 33344444555666665555553  23344444445544


Q ss_pred             Hh
Q psy1909          80 HL   81 (92)
Q Consensus        80 ~~   81 (92)
                      ..
T Consensus       342 ~~  343 (375)
T PLN00012        342 YF  343 (375)
T ss_pred             HH
Confidence            33

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=98.79  E-value=1e-08  Score=76.60  Aligned_cols=84  Identities=15%  Similarity=0.049  Sum_probs=60.5

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchHHHHHHH---HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLYLSGF---GGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQI   78 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~~~~~---~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~   78 (92)
                      +|+.....+...||+|+|+|.|.||+|+++|++...+...+   +..+...+...|.....++.+++++.....++.+|+
T Consensus       182 l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~  261 (296)
T PRK05951        182 LLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQL  261 (296)
T ss_pred             HHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888999999999999999999999997755433232   335556666666665556667777776666677777


Q ss_pred             HHhccCC
Q psy1909          79 YHLDIVF   85 (92)
Q Consensus        79 ~~~~~~~   85 (92)
                      +..+.++
T Consensus       262 ~~~~~~~  268 (296)
T PRK05951        262 RKFPPDP  268 (296)
T ss_pred             hhCcccc
Confidence            6655443

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=98.62  E-value=1.5e-07  Score=70.58  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=32.3

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccchH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDKTK   36 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~   36 (92)
                      +|+.+.++++.++|+|+|+|.|+||+|+++|++..
T Consensus       194 l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a  228 (306)
T TIGR02056       194 IAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETA  228 (306)
T ss_pred             HHHHHHHHHHHccChHHHHHcCCcCcchhcChHHH
Confidence            58999999999999999999999999999997643

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=98.59  E-value=1.6e-07  Score=69.27  Aligned_cols=61  Identities=18%  Similarity=0.238  Sum_probs=42.5

Q ss_pred             cchhhhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHH
Q psy1909           2 QHKDVLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWP   62 (92)
Q Consensus         2 ~W~~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~   62 (92)
                      +|+.+.++++.++|.|+|++.|.|++|+++|++ ++.+...+......+........+..+.
T Consensus       172 l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~  233 (283)
T TIGR01476       172 LGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWV  233 (283)
T ss_pred             HHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH
Confidence            578889999999999999999999999999976 4444444444444333332333444443

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=98.01  E-value=2.3e-05  Score=55.63  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=26.4

Q ss_pred             hhhhhhccccChHhHHHcCchHHHHHhccchHHH
Q psy1909           5 DVLDKQSRPRDRKEDISLGLKSTAILFGDKTKLY   38 (92)
Q Consensus         5 ~~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~~~~~   38 (92)
                      ...-...-++|.|+|++.|.|+.|+++|++....
T Consensus       160 ~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  160 FAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            3334444699999999999999999999764433

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02878 homogentisate phytyltransferase

Probab=97.48  E-value=0.00072  Score=50.89  Aligned_cols=81  Identities=17%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             hhhhhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcH--HHH-HHHHHHHHHHHHHHHHh
Q psy1909           6 VLDKQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTW--PYF-LSLSLIGSHLASQIYHL   81 (92)
Q Consensus         6 ~yDtiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~--~~~-~~l~~~~~~l~~q~~~~   81 (92)
                      +-+.+=..+|.|-|++.|+||.|+++|++ +......+..+.......+|......+  ..- .+-.+.+..+.+|-+.+
T Consensus       171 ~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs~~v  250 (280)
T PLN02878        171 VIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRAQSV  250 (280)
T ss_pred             HHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhc
Confidence            44566678999999999999999999955 555554444444443334554443222  222 23445556677888888


Q ss_pred             ccCCc
Q psy1909          82 DIVFL   86 (92)
Q Consensus        82 ~~~~~   86 (92)
                      |.++.
T Consensus       251 D~~sk  255 (280)
T PLN02878        251 DLSSK  255 (280)
T ss_pred             CcccH
Confidence            87543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=97.40  E-value=0.00056  Score=51.14  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=27.3

Q ss_pred             hccccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHH
Q psy1909          10 QSRPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMM   47 (92)
Q Consensus        10 iYA~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~   47 (92)
                      +--..|.|.|++.|-|+.|+++|++. +..-..+.....
T Consensus       183 ~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay  221 (284)
T TIGR00751       183 INNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAG  221 (284)
T ss_pred             HcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHH
Confidence            34468999999999999999999764 433344433333

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=97.36  E-value=0.00059  Score=51.88  Aligned_cols=75  Identities=20%  Similarity=0.047  Sum_probs=44.7

Q ss_pred             cccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhccCCcc
Q psy1909          12 RPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGILSGQTWPYFLSLSLIGSHLASQIYHLDIVFLG   87 (92)
Q Consensus        12 A~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~l~~~~~~l~~q~~~~~~~~~~   87 (92)
                      -..|.|+|+|.|=|+.|+++|++ ++.+-..+......+....-......+++++. .++.-..++..+.+..+..+
T Consensus       197 NirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll~-ll~~Pl~ir~~r~v~~~~~~  272 (303)
T COG1575         197 NLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLLF-LLALPLAIRAARPVRQNQVP  272 (303)
T ss_pred             ccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-HHHHHHHHHHHHHHHhccCc
Confidence            36899999999999999999976 55555555555555444433333334444332 23333344445556554443

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=97.34  E-value=0.00065  Score=50.81  Aligned_cols=37  Identities=14%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             cccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHH
Q psy1909          12 RPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMS   48 (92)
Q Consensus        12 A~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~   48 (92)
                      -..|+|.|++.|-|+.|+++|++. ...-..+.....+
T Consensus       182 n~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~  219 (285)
T TIGR02235       182 HFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYV  219 (285)
T ss_pred             CCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHH
Confidence            367999999999999999999764 4443444433333

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13591 ubiA prenyltransferase; Provisional

Probab=97.21  E-value=0.00051  Score=52.24  Aligned_cols=47  Identities=23%  Similarity=0.183  Sum_probs=35.4

Q ss_pred             hhccccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHHHHHH
Q psy1909           9 KQSRPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLVTCGI   55 (92)
Q Consensus         9 tiYA~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~~~g~   55 (92)
                      ++.-..|.|.|++.|.|+.|+++|++ ++.+...++....+++.....
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~  244 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALI  244 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999999955 666666666655555544333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=97.18  E-value=0.00089  Score=50.60  Aligned_cols=38  Identities=18%  Similarity=0.305  Sum_probs=27.0

Q ss_pred             cccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHH
Q psy1909          12 RPRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSS   49 (92)
Q Consensus        12 A~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~   49 (92)
                      =..|+|.|++.|.|+.|+++|++. +..-..+......+
T Consensus       195 n~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~  233 (304)
T PRK07419        195 HFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYAL  233 (304)
T ss_pred             CCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHH
Confidence            357999999999999999999764 44334443333333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=97.12  E-value=0.00095  Score=50.58  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=28.7

Q ss_pred             cccChHhHHHcCchHHHHHhccc-hHHHHHHHHHHHHHHHH
Q psy1909          12 RPRDRKEDISLGLKSTAILFGDK-TKLYLSGFGGVMMSSLV   51 (92)
Q Consensus        12 A~qD~~dD~k~Gv~S~A~~fG~~-~~~~~~~~~~~~~~~l~   51 (92)
                      -..|.|.|++.|-|+.|+++|++ +...-..+.....++..
T Consensus       210 n~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~  250 (317)
T PRK13387        210 NLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIA  250 (317)
T ss_pred             CCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHH
Confidence            36799999999999999999976 44444554444444333

>PLN02922 prenyltransferase

Probab=96.87  E-value=0.0038  Score=47.40  Aligned_cols=38  Identities=16%  Similarity=0.073  Sum_probs=27.4

Q ss_pred             ccChHhHHHcCchHHHHHhccch-HHHHHHHHHHHHHHH
Q psy1909          13 PRDRKEDISLGLKSTAILFGDKT-KLYLSGFGGVMMSSL   50 (92)
Q Consensus        13 ~qD~~dD~k~Gv~S~A~~fG~~~-~~~~~~~~~~~~~~l   50 (92)
                      ..|.|.|+|.|-|+.|+++|++. +.....+......+.
T Consensus       210 ~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~  248 (315)
T PLN02922        210 FHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLL  248 (315)
T ss_pred             CcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999764 444444444443333

>PRK13592 ubiA prenyltransferase; Provisional

Probab=93.26  E-value=0.28  Score=37.37  Aligned_cols=68  Identities=15%  Similarity=0.067  Sum_probs=38.5

Q ss_pred             hhhhccccChHhHHHcCchHHHHHhc-cchHHHHHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHHHH
Q psy1909           7 LDKQSRPRDRKEDISLGLKSTAILFG-DKTKLYLSGFGGVMMSSLVTCGI-LSGQTWPYFLSLSLIGSHLASQIY   79 (92)
Q Consensus         7 yDtiYA~qD~~dD~k~Gv~S~A~~fG-~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~l~~~~~~l~~q~~   79 (92)
                      .+.+=...| +||++ |++|.|+++| +++..+...+....+++-..--+ ...+|+   +.+.++...+.+|..
T Consensus       191 rEI~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~~g~---~~l~~~~~~~l~~~~  260 (299)
T PRK13592        191 WEVCRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISHVGV---VVLVLNVIWMTVQFE  260 (299)
T ss_pred             HHHHHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhhhHH---HHHHHHHHHHHHHHH
Confidence            344445689 78886 5999999999 55666666665555543111111 111222   334455556666654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00