Psyllid ID: psy1912

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-------
Protein Sequence
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Secondary Structure (PSIPRED)
cEEEHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHccccEccHHHHHcccccccccccccccccc
Coil and Loop (DISEMBL)
mtfnygalmgysavtgcvdwslclplylsgICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSItnidnvnrglpyq
Flexible Loop (DISEMBL)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFIsksitnidnvnrglpyq
Low Complexity Region (SEG)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Disordered region (IsUnstruct)
**FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNV*******
Disordered Region (DISOPRED)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Disordered Region (DISEMBL)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Disordered Region (DISPRO)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGVNFISKSITNIDNVNRGLPYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	77	2.2.26 [Sep-21-2011]
Q16QL3	441	4-hydroxybenzoate polypre	N/A	N/A	0.766	0.133	0.557	1e-14
Q9VHS7	392	4-hydroxybenzoate polypre	yes	N/A	0.610	0.119	0.638	1e-13
Q298G6	397	4-hydroxybenzoate polypre	yes	N/A	0.610	0.118	0.638	1e-13
Q2KIQ4	371	4-hydroxybenzoate polypre	yes	N/A	0.571	0.118	0.727	2e-13
Q499N4	374	4-hydroxybenzoate polypre	yes	N/A	0.571	0.117	0.681	2e-13
Q66JT7	374	4-hydroxybenzoate polypre	yes	N/A	0.571	0.117	0.681	3e-13
Q54U71	463	4-hydroxybenzoate polypre	yes	N/A	0.818	0.136	0.492	2e-12
Q96H96	371	4-hydroxybenzoate polypre	no	N/A	0.766	0.159	0.557	2e-12
Q93YP7	407	4-hydroxybenzoate polypre	no	N/A	0.571	0.108	0.636	3e-12
Q10252	360	4-hydroxybenzoate polypre	yes	N/A	0.571	0.122	0.586	2e-10

>sp|Q16QL3|COQ2_AEDAE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Aedes aegypti GN=coq2 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 46/61 (75%), Gaps = 2/61 (3%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           MTFN+GAL+G+SA  G V WS CLPLY++G+CWTI+YDTIYAHQ ++   L+ +    + 
Sbjct: 256 MTFNWGALLGWSATQGSVMWSACLPLYVAGVCWTIVYDTIYAHQDKVDDALLGIKSTAIR 315

Query: 59  F 59
           F
Sbjct: 316 F 316

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.
Aedes aegypti (taxid: 7159)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 3EC: 9

>sp|Q9VHS7|COQ2_DROME 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila melanogaster GN=Coq2 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           M FN+GAL+G+ A  G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct: 217 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 263

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q298G6|COQ2_DROPS 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Drosophila pseudoobscura pseudoobscura GN=coq2 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           M FN+GAL+G+ A  G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct: 223 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 269

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q2KIQ4|COQ2_BOVIN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Bos taurus GN=COQ2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TFN+GAL+G+SAV G  D S+CLPLY SGI WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIYDTIYAHQ 254

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q499N4|COQ2_RAT 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Rattus norvegicus GN=Coq2 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TFN+GAL+G+SAV G  D ++CLPLY SG+ WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIYDTIYAHQ 254

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q66JT7|COQ2_MOUSE 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Mus musculus GN=Coq2 PE=2 SV=2

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TFN+GAL+G+SAV G  D ++CLPLY SG+ WT+IYDTIYAHQ
Sbjct: 211 LTFNWGALLGWSAVKGSCDPAVCLPLYFSGVMWTLIYDTIYAHQ 254

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q54U71|COQ2_DICDI 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Dictyostelium discoideum GN=coq2 PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 2/65 (3%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           + FN+GAL GYSA+ G  +WS+  PLYL+GI WT++YDTIYAHQ +    L+ +    + 
Sbjct: 309 LAFNWGALAGYSAIAGSCNWSIVAPLYLAGISWTMVYDTIYAHQDKRDDILVGVKSTALK 368

Query: 59  FISKS 63
           F  KS
Sbjct: 369 FAEKS 373

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q96H96|COQ2_HUMAN 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Homo sapiens GN=COQ2 PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           +TFN+GAL+G+SA+ G  D S+CLPLY SG+ WT+IYDTIYAHQ +    LI L    + 
Sbjct: 211 LTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALR 270

Query: 59  F 59
           F
Sbjct: 271 F 271

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q93YP7|4HPT_ARATH 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Arabidopsis thaliana GN=PPT1 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/44 (63%), Positives = 38/44 (86%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +T N+GAL+G++AV G +  S+ LPLYLSG+CWT++YDTIYAHQ
Sbjct: 264 LTINWGALLGWTAVKGSIAPSIVLPLYLSGVCWTLVYDTIYAHQ 307

Involved in coenzyme Q (CoQ) biosynthesis. Catalyzes the prenylation of para-hydroxybenzoate (PHB) with a polyprenyl group. Required for embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

>sp|Q10252|COQ2_SCHPO 4-hydroxybenzoate polyprenyltransferase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=coq2 PE=1 SV=2

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 36/46 (78%), Gaps = 2/46 (4%)

Query: 1   MTFNYGALMGYSAVTG--CVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TF YGA+MG+ A+ G  C++WS+  PLYLS I W ++YDTIYAHQ
Sbjct: 208 LTFGYGAVMGWPALAGEACMNWSVVAPLYLSTISWIVLYDTIYAHQ 253

Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of coenzyme Q (CoQ) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
307179433	339	Para-hydroxybenzoate--polyprenyltransfer	0.610	0.138	0.723	2e-14
170043503	315	para-hydroxybenzoate-polyprenyltransfera	0.766	0.187	0.590	2e-14
383855726	409	PREDICTED: 4-hydroxybenzoate polyprenylt	0.844	0.158	0.552	4e-14
312380983	484	hypothetical protein AND_06803 [Anophele	0.597	0.095	0.673	4e-14
345481641	415	PREDICTED: 4-hydroxybenzoate polyprenylt	0.818	0.151	0.569	5e-14
380020232	296	PREDICTED: 4-hydroxybenzoate polyprenylt	0.649	0.168	0.68	1e-13
332373142	374	unknown [Dendroctonus ponderosae]	0.610	0.125	0.723	1e-13
432872893	336	PREDICTED: 4-hydroxybenzoate polyprenylt	0.571	0.130	0.727	1e-13
332023983	368	Para-hydroxybenzoate--polyprenyltransfer	0.610	0.127	0.702	1e-13
307215250	300	Para-hydroxybenzoate--polyprenyltransfer	0.597	0.153	0.717	2e-13

>gi|307179433|gb|EFN67757.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Camponotus floridanus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 43/47 (91%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           MTFN+GAL+G+SA+ G  DWS+CLPLY++GICWTI+YDTIYAHQ R+
Sbjct: 165 MTFNWGALLGWSAIRGSCDWSICLPLYIAGICWTILYDTIYAHQDRV 211

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043503|ref|XP_001849425.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus] gi|167866821|gb|EDS30204.1| para-hydroxybenzoate-polyprenyltransferase, mitochondrial [Culex quinquefasciatus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 48/61 (78%), Gaps = 2/61 (3%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           MTFN+GAL+G+SA TG V+WS CLPLYL+G+CWTI+YDTIYAHQ ++   L+ +    + 
Sbjct: 134 MTFNWGALLGWSATTGSVEWSACLPLYLAGVCWTIVYDTIYAHQDKVDDVLLGIKSTAIR 193

Query: 59  F 59
           F
Sbjct: 194 F 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855726|ref|XP_003703361.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Megachile rotundata]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           MTFN+GAL+G+SAV G  DW +CLPLY+SGICWT++YDTIYAHQ ++   ++ +    + 
Sbjct: 244 MTFNWGALLGWSAVQGSCDWCICLPLYISGICWTLLYDTIYAHQDKMDDLIVGIKSTALK 303

Query: 59  FISKSIT 65
           F SK+ T
Sbjct: 304 FGSKTKT 310

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312380983|gb|EFR26840.1| hypothetical protein AND_06803 [Anopheles darlingi]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/46 (67%), Positives = 40/46 (86%)

Query: 2   TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           TFN+GAL+G+SA  G VDW+ CLPLY +G+CWTI+YDTIYAHQ ++
Sbjct: 91  TFNWGALLGWSATQGSVDWAACLPLYAAGVCWTIVYDTIYAHQDKV 136

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481641|ref|XP_001605798.2| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Nasonia vitripennis]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 49/65 (75%), Gaps = 2/65 (3%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
           MTFN+GAL+G+SA+ G  DWS+CLPLY +GICWTI+YDTIYAHQ +I   L+ +    + 
Sbjct: 243 MTFNWGALLGWSAIQGSCDWSVCLPLYTAGICWTILYDTIYAHQDKIDDVLLGIKSTALK 302

Query: 59  FISKS 63
           F  K+
Sbjct: 303 FGDKT 307

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020232|ref|XP_003693995.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like, partial [Apis florea]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLI 50
           MTFN+GAL+G+SAV G  +WS+CLPLY++GICWT++YDTIYAHQ  I +I
Sbjct: 158 MTFNWGALLGWSAVQGSCNWSVCLPLYIAGICWTLLYDTIYAHQXSIVMI 207

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332373142|gb|AEE61712.1| unknown [Dendroctonus ponderosae]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/47 (72%), Positives = 42/47 (89%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           + FN+GAL+GYSAVTG +D ++CLPLY SG+CWTIIYDTIYAHQ R+
Sbjct: 211 LAFNWGALLGYSAVTGSIDPTICLPLYFSGVCWTIIYDTIYAHQDRL 257

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432872893|ref|XP_004072177.1| PREDICTED: 4-hydroxybenzoate polyprenyltransferase, mitochondrial-like [Oryzias latipes]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/44 (72%), Positives = 39/44 (88%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TFN+GAL+G+SAV G  DWS+CLPLY SG+ WT+IYDTIYAHQ
Sbjct: 185 LTFNWGALLGWSAVRGSCDWSVCLPLYFSGVMWTLIYDTIYAHQ 228

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|332023983|gb|EGI64201.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Acromyrmex echinatior]

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/47 (70%), Positives = 43/47 (91%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
           MTFN+GAL+G+SA+ G  +WS+CLPLY++GICWTI+YDTIYAHQ R+
Sbjct: 196 MTFNWGALLGWSAIHGSCNWSICLPLYVAGICWTILYDTIYAHQDRL 242

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215250|gb|EFN90004.1| Para-hydroxybenzoate--polyprenyltransferase, mitochondrial [Harpegnathos saltator]

 Score = 80.1 bits (196), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/46 (71%), Positives = 40/46 (86%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVR 46
           M FN+GAL+G+SAV G  DWS+CLP+Y+ GICWTI+YDTIYAHQ R
Sbjct: 137 MAFNWGALLGWSAVRGSCDWSICLPMYIGGICWTIVYDTIYAHQDR 182

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	77
UNIPROTKB|Q16QL3	441	coq2 "4-hydroxybenzoate polypr	0.766	0.133	0.557	4e-15
ZFIN|ZDB-GENE-070410-84	378	coq2 "coenzyme Q2 homolog, pre	0.571	0.116	0.727	7e-15
UNIPROTKB|F1NYJ7	328	COQ2 "Uncharacterized protein"	0.571	0.134	0.681	1.1e-14
UNIPROTKB|H0YAI0	225	COQ2 "4-hydroxybenzoate polypr	0.571	0.195	0.681	1.3e-13
UNIPROTKB|E2QT06	368	COQ2 "Uncharacterized protein"	0.571	0.119	0.704	1.8e-13
FB|FBgn0037574	392	Coq2 "Coenzyme Q biosynthesis	0.610	0.119	0.638	2.8e-13
UNIPROTKB|Q298G6	397	coq2 "4-hydroxybenzoate polypr	0.610	0.118	0.638	2.9e-13
UNIPROTKB|F1N1G6	371	COQ2 "4-hydroxybenzoate polypr	0.571	0.118	0.727	3e-13
UNIPROTKB|Q2KIQ4	371	COQ2 "4-hydroxybenzoate polypr	0.571	0.118	0.727	3e-13
UNIPROTKB|E2QRG7	328	COQ2 "4-hydroxybenzoate polypr	0.571	0.134	0.681	3.4e-13

UNIPROTKB|Q16QL3 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Aedes aegypti (taxid:7159)]

 Score = 198 (74.8 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 34/61 (55%), Positives = 46/61 (75%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIH--LIDLCENGVN 58
             MTFN+GAL+G+SA  G V WS CLPLY++G+CWTI+YDTIYAHQ ++   L+ +    + 
Sbjct:   256 MTFNWGALLGWSATQGSVMWSACLPLYVAGVCWTIVYDTIYAHQDKVDDALLGIKSTAIR 315

Query:    59 F 59
             F
Sbjct:   316 F 316

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005736 "DNA-directed RNA polymerase I complex" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006360 "transcription from RNA polymerase I promoter" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

ZFIN|ZDB-GENE-070410-84 coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Danio rerio (taxid:7955)]

 Score = 194 (73.4 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 32/44 (72%), Positives = 40/44 (90%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SAV G  DWS+CLPLY+SG+ WT+IYDTIYAHQ
Sbjct:   219 LTFNWGALLGWSAVKGSCDWSVCLPLYVSGVMWTLIYDTIYAHQ 262

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

UNIPROTKB|F1NYJ7 COQ2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 30/44 (68%), Positives = 39/44 (88%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SA+ G  DWS+CLPLY SG+ WT++YDTIYAHQ
Sbjct:   171 LTFNWGALLGWSAIHGSCDWSVCLPLYFSGVMWTLVYDTIYAHQ 214

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA

UNIPROTKB|H0YAI0 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SA+ G  D S+CLPLY SG+ WT+IYDTIYAHQ
Sbjct:   108 LTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIYDTIYAHQ 151

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QT06 COQ2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
 Identities = 31/44 (70%), Positives = 38/44 (86%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SA+ G  D S+CLPLY SGI WT+IYDTIYAHQ
Sbjct:   209 LTFNWGALLGWSAIKGSCDLSICLPLYFSGIMWTLIYDTIYAHQ 252

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

FB|FBgn0037574 Coq2 "Coenzyme Q biosynthesis protein 2" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
             M FN+GAL+G+ A  G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct:   217 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 263

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0006743 "ubiquinone metabolic process" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IDA

GO:0048009 "insulin-like growth factor receptor signaling pathway" evidence=IDA

GO:0050832 "defense response to fungus" evidence=IMP

GO:0050830 "defense response to Gram-positive bacterium" evidence=IMP

GO:0050829 "defense response to Gram-negative bacterium" evidence=IMP

UNIPROTKB|Q298G6 coq2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 180 (68.4 bits), Expect = 2.9e-13, P = 2.9e-13
 Identities = 30/47 (63%), Positives = 39/47 (82%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRI 47
             M FN+GAL+G+ A  G V+ + CLPLYLSG+CWTI+YDTIYAHQ ++
Sbjct:   223 MAFNWGALLGWCATQGSVNLAACLPLYLSGVCWTIVYDTIYAHQDKL 269

GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

GO:0016094 "polyprenol biosynthetic process" evidence=ISS

GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS

UNIPROTKB|F1N1G6 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SAV G  D S+CLPLY SGI WT+IYDTIYAHQ
Sbjct:   211 LTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIYDTIYAHQ 254

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=IEA

UNIPROTKB|Q2KIQ4 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 3.0e-13, P = 3.0e-13
 Identities = 32/44 (72%), Positives = 38/44 (86%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SAV G  D S+CLPLY SGI WT+IYDTIYAHQ
Sbjct:   211 LTFNWGALLGWSAVKGSCDPSVCLPLYFSGIMWTLIYDTIYAHQ 254

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

UNIPROTKB|E2QRG7 COQ2 "4-hydroxybenzoate polyprenyltransferase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 177 (67.4 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 30/44 (68%), Positives = 38/44 (86%)

Query:     1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
             +TFN+GAL+G+SA+ G  D S+CLPLY SG+ WT+IYDTIYAHQ
Sbjct:   211 LTFNWGALLGWSAIKGSCDPSVCLPLYFSGVMWTLIYDTIYAHQ 254

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0006744 "ubiquinone biosynthetic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q66JT7	COQ2_MOUSE	2, ., 5, ., 1, ., 3, 9	0.6818	0.5714	0.1176	yes	N/A
P32378	COQ2_YEAST	2, ., 5, ., 1, ., 3, 9	0.5476	0.5324	0.1102	yes	N/A
Q9VHS7	COQ2_DROME	2, ., 5, ., 1, ., 3, 9	0.6382	0.6103	0.1198	yes	N/A
Q2KIQ4	COQ2_BOVIN	2, ., 5, ., 1, ., 3, 9	0.7272	0.5714	0.1185	yes	N/A
Q499N4	COQ2_RAT	2, ., 5, ., 1, ., 3, 9	0.6818	0.5714	0.1176	yes	N/A
Q10252	COQ2_SCHPO	2, ., 5, ., 1, ., 3, 9	0.5869	0.5714	0.1222	yes	N/A
Q298G6	COQ2_DROPS	2, ., 5, ., 1, ., 3, 9	0.6382	0.6103	0.1183	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	77
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	6e-24
PRK12878	314	PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransf	3e-15
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	8e-15
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	4e-10
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	2e-08
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	3e-07
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	4e-05

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 90.5 bits (225), Expect = 6e-24
 Identities = 28/44 (63%), Positives = 39/44 (88%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           +TFN+GAL+G++AV G +D ++ LPLY SG+CWT++YDTIYAHQ
Sbjct: 146 LTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQ 189

Length = 289

>gnl|CDD|183808 PRK12878, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 67.3 bits (165), Expect = 3e-15
 Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           + F++GALMG++A  G +  +  L LY   I WTI YDTIYAHQ
Sbjct: 173 LAFSWGALMGWAAHFGSLSLAAVL-LYAGSIAWTIGYDTIYAHQ 215

Length = 314

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 66.2 bits (162), Expect = 8e-15
 Identities = 25/46 (54%), Positives = 31/46 (67%), Gaps = 3/46 (6%)

Query: 2   TFNYGALMGYSAVTGCVDWSLCLP-LYLSGICWTIIYDTIYAHQVR 46
            F +GALMG++AVTG  D S     LYL+ I WT+ YDTIYA Q +
Sbjct: 142 AFGWGALMGWAAVTG--DLSTAAWVLYLANILWTLGYDTIYAMQDK 185

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)

Query: 2   TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           TFN G LM ++AV   +D    + LY+  I WTI YDTIYA+Q
Sbjct: 147 TFNMGILMAFAAVQNQLDIE-AILLYIGCIFWTIGYDTIYAYQ 188

Length = 285

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 48.3 bits (116), Expect = 2e-08
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
             F +G  M ++AV G V       L+L+ I WT+ YDT YA
Sbjct: 143 AAFGWGIPMAFAAVQGSVPL-EAWLLFLANILWTVAYDTQYA 183

Length = 282

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)

Query: 3   FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYA 42
           + +  L+ +SAVTG +D    L L+ + + WT+ +DT+YA
Sbjct: 149 WGFAVLISWSAVTGHLDLGTWL-LWAATVFWTLGFDTVYA 187

Length = 290

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 39.2 bits (92), Expect = 4e-05
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 1   MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQ 44
           + F  GAL G +AV G +   L   L L+ I WT+ YD IYA Q
Sbjct: 148 LAFGLGALAGAAAVGGSLPL-LAWLLLLAAILWTLGYDIIYAIQ 190

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	77
KOG1381|consensus	353		99.89
PRK12895	286	ubiA prenyltransferase; Reviewed	99.84
PRK12873	294	ubiA prenyltransferase; Reviewed	99.75
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	99.74
PRK12876	300	ubiA prenyltransferase; Reviewed	99.72
PRK12888	284	ubiA prenyltransferase; Reviewed	99.71
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.7
PRK13106	300	ubiA prenyltransferase; Reviewed	99.69
PRK12874	291	ubiA prenyltransferase; Reviewed	99.62
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.62
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	99.61
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	99.61
PRK12886	291	ubiA prenyltransferase; Reviewed	99.59
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	99.59
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	99.56
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	99.49
PRK04375	296	protoheme IX farnesyltransferase; Provisional	99.46
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.36
PRK12392	331	bacteriochlorophyll c synthase; Provisional	99.31
PRK12871	297	ubiA prenyltransferase; Reviewed	99.28
PLN02776	341	prenyltransferase	99.22
PRK13595	292	ubiA prenyltransferase; Provisional	99.2
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.15
PRK12875	282	ubiA prenyltransferase; Reviewed	99.11
PRK12884	279	ubiA prenyltransferase; Reviewed	99.04
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	99.02
PRK12882	276	ubiA prenyltransferase; Reviewed	98.96
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	98.95
PRK13105	282	ubiA prenyltransferase; Reviewed	98.91
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	98.89
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	98.69
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	98.65
PLN00012	375	chlorophyll synthetase; Provisional	98.53
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	98.46
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	98.27
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	98.25
PRK05951	296	ubiA prenyltransferase; Reviewed	98.14
PRK12872	285	ubiA prenyltransferase; Reviewed	98.01
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	97.82
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	96.37
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	96.31
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	95.84
PLN02922	315	prenyltransferase	94.92
PRK13591	307	ubiA prenyltransferase; Provisional	94.89
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	94.61
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	93.77
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	93.23
PLN02878	280	homogentisate phytyltransferase	93.05

>KOG1381|consensus

Probab=99.89  E-value=5.1e-24  Score=160.65  Aligned_cols=67  Identities=45%  Similarity=0.838  Sum_probs=61.7

Q ss_pred             CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912           1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI   67 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~   67 (77)
                      +|||||+++||.|+.|+..++.+++||++.++||+.|||||||||++||+|+|+||-  +||+++..-+
T Consensus       204 ltfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl  272 (353)
T KOG1381|consen  204 LTFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWL  272 (353)
T ss_pred             hhcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHH
Confidence            589999999999999999887899999999999999999999999999999999994  9998765433

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=99.84  E-value=1.9e-21  Score=144.15  Aligned_cols=69  Identities=20%  Similarity=0.242  Sum_probs=62.0

Q ss_pred             ceehhhHHHHHHhhCCCChh-hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWS-LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~-~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++++++++||++++|++++. .+++|++++++|+++|||+|||||+|||+|+|+||+  +||.|.++.++..
T Consensus       139 ~~g~~~l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~  210 (286)
T PRK12895        139 IIGLGVLAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDI  210 (286)
T ss_pred             HHHhHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHH
Confidence            57899999999999998753 246899999999999999999999999999999998  9999999887743

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=99.75  E-value=8.4e-19  Score=130.83  Aligned_cols=66  Identities=21%  Similarity=0.352  Sum_probs=57.2

Q ss_pred             CceehhhHHHHHHhhCCCChh-hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912           1 MTFNYGALMGYSAVTGCVDWS-LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI   67 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~~~~~-~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~   67 (77)
                      +++++++++||++++|++++. ..++||+++++|+++|||+||+||+|||+|+|+||+  +||++ .+++
T Consensus       149 ~~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~  217 (294)
T PRK12873        149 LCWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKT  217 (294)
T ss_pred             HHHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHH
Confidence            367999999999999999863 245678999999999999999999999999999998  99964 4443

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=99.74  E-value=2.1e-18  Score=127.71  Aligned_cols=69  Identities=42%  Similarity=0.813  Sum_probs=61.4

Q ss_pred             CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +++++++++||++++|++++...+++++++++|+++|||+||+||+|||+|.|+||+  +||.+....++.
T Consensus       146 ~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~  216 (289)
T PLN02809        146 LTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG  216 (289)
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH
Confidence            367899999999999998876444699999999999999999999999999999997  999997777653

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=99.72  E-value=5.3e-18  Score=127.06  Aligned_cols=70  Identities=19%  Similarity=0.096  Sum_probs=56.8

Q ss_pred             CceehhhHHHHHHhhCC-CChh---hHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           1 MTFNYGALMGYSAVTGC-VDWS---LCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~-~~~~---~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +++++|++++|.+++++ +++.   .++++.++..+|+.+|||+||+||+|||+|.|+||+  +||.+.++.++..
T Consensus       148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~  223 (300)
T PRK12876        148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASA  223 (300)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHH
Confidence            36789999999999987 4431   134556667777779999999999999999999998  9999988777653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=99.71  E-value=1e-17  Score=123.52  Aligned_cols=68  Identities=25%  Similarity=0.234  Sum_probs=62.2

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++++++++||.+++|++++. ++++++.+.+|+.+||++|++||+|||+|.|+||+  +||.|.+..++..
T Consensus       141 ~~~~~~l~g~~a~~g~~~~~-~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~  210 (284)
T PRK12888        141 AQAVGPVGAWIAVTGTWSWP-AVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRV  210 (284)
T ss_pred             HHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHH
Confidence            57899999999999999886 78999999999999999999999999999999997  9999988865543

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.70  E-value=1.5e-17  Score=122.67  Aligned_cols=68  Identities=26%  Similarity=0.430  Sum_probs=62.6

Q ss_pred             CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +++++++++||.+++|++++. ++++++++++|+.++|++||+||+|||+|.|+||+  +||.|.+..++.
T Consensus       147 ~~~~~~~l~g~~a~~g~~~~~-~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~  216 (290)
T PRK12870        147 IAWGFAVLISWSAVTGHLDLG-TWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGL  216 (290)
T ss_pred             HHHHhHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHH
Confidence            357899999999999999886 78999999999999999999999999999999997  999998887764

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=99.69  E-value=1.9e-17  Score=123.30  Aligned_cols=67  Identities=12%  Similarity=0.025  Sum_probs=57.6

Q ss_pred             ceehhhHHHHHHhhCCCCh-------hhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDW-------SLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~-------~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      ++++++++||.+++|....       ..++++++++++|+++|||+|++||+|||+|.|+||+  +|| |.++.++.
T Consensus       151 ~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~  226 (300)
T PRK13106        151 IQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAG  226 (300)
T ss_pred             HHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHH
Confidence            5788999999999885421       1357789999999999999999999999999999998  999 77777765

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=99.62  E-value=4.2e-16  Score=115.29  Aligned_cols=68  Identities=19%  Similarity=0.225  Sum_probs=61.8

Q ss_pred             CceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           1 MTFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         1 l~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +++++++++||++++|++++. .+++++++.+|+.++|++|++||+|||+|.|+||+  ++|.|.+..++.
T Consensus       148 ~~~~~~~l~G~~av~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~  217 (291)
T PRK12874        148 LSLGLAPIAGVVAVLGEIPLW-SVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISR  217 (291)
T ss_pred             HHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHH
Confidence            367899999999999999886 68899999999999999999999999999999997  999998877654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.62  E-value=4.8e-16  Score=113.52  Aligned_cols=68  Identities=37%  Similarity=0.532  Sum_probs=62.7

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +++++++++|.+++|++++. ++++++.+++|+..+|++||+||+|||+|.|+||+  ++|.|.+..+...
T Consensus       147 ~~~~~~l~~~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~  216 (285)
T PRK12847        147 TFNMGILMAFAAVQNQLDIE-AILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRL  216 (285)
T ss_pred             HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHH
Confidence            57899999999999999887 78999999999999999999999999999999997  9999988877654

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=99.61  E-value=5.4e-16  Score=115.80  Aligned_cols=67  Identities=36%  Similarity=0.518  Sum_probs=61.8

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +++|++++||.+++|++++. +++++++.++|+.++|++|++||+|||+|.|++|+  +||.+.+..+..
T Consensus       174 ~~~~~~l~g~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~  242 (314)
T PRK12878        174 AFSWGALMGWAAHFGSLSLA-AVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVL  242 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchH-HHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHH
Confidence            57899999999999999986 78999999999999999999999999999999997  999988877654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=99.61  E-value=5.7e-16  Score=113.13  Aligned_cols=69  Identities=30%  Similarity=0.317  Sum_probs=64.0

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhhc
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNVN   71 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~~   71 (77)
                      ++++++++|+++++++.+.. +++|+++.++|++++|++|++||+|+|+|.|+||+  .||.+.++.++...
T Consensus       149 ~~~~~~~~g~~a~~~~~~~~-~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~  219 (289)
T COG0382         149 AFGLGALAGAAAVGGSLPLL-AWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLL  219 (289)
T ss_pred             HHHHHHHHHHHHHhCccchH-HHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHH
Confidence            57899999999999987776 79999999999999999999999999999999997  99999999988654

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=99.59  E-value=1.6e-15  Score=112.05  Aligned_cols=68  Identities=18%  Similarity=0.205  Sum_probs=61.8

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++++++++||.+++|++++. ++++++++.+|+.++|++||+||+|||+|.|+||+  ++|.+.+..++.+
T Consensus       144 ~~~~~~l~g~~a~~g~~~~~-~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~  213 (291)
T PRK12886        144 CLALAPLGAWIAIRGTIELP-AILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARV  213 (291)
T ss_pred             HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHH
Confidence            56789999999999999886 78999999999999999999999999999999997  9999988776543

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=99.59  E-value=1.5e-15  Score=111.03  Aligned_cols=66  Identities=30%  Similarity=0.445  Sum_probs=60.4

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNID   68 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~   68 (77)
                      +++++++++|.++++++++. ++++++++.+|+..+|++||+||+|||+|.|+||+  ++|.|.+..++
T Consensus       144 ~~g~~~~~g~~a~~~~~~~~-~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~  211 (282)
T PRK12848        144 AFGWGIPMAFAAVQGSVPLE-AWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIG  211 (282)
T ss_pred             HHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHH
Confidence            46788999999999999886 78999999999999999999999999999999997  99998876654

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=99.56  E-value=3.8e-15  Score=109.04  Aligned_cols=63  Identities=40%  Similarity=0.624  Sum_probs=57.5

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSIT   65 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~   65 (77)
                      ++++++++||.+++|++++. ++.+++++++|+.++|++|++||+|||+|.|+||+  ++|.+...
T Consensus       142 ~~~~~~~~g~~a~~g~~~~~-~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~  206 (281)
T TIGR01474       142 AFGWGALMGWAAVTGDLSTA-AWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKP  206 (281)
T ss_pred             HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHH
Confidence            57899999999999998876 67799999999999999999999999999999997  99987643

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=99.49  E-value=3e-14  Score=103.82  Aligned_cols=67  Identities=24%  Similarity=0.254  Sum_probs=60.0

Q ss_pred             ceehhhHHHHHHhhCCCC--hhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVD--WSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~--~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      ++++++++||.+++|+++  +. ++++++..++|+..+|++|++||+|+|+|.|+||+  ++|.|.+..+..
T Consensus       138 ~~~~~~~~g~~a~~g~~~~~~~-~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~  208 (282)
T TIGR01475       138 TYGLAPLAGWVAVIGTISFFLV-AWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIAS  208 (282)
T ss_pred             HHHHHHHHHHHHHhCCccchHH-HHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHH
Confidence            467899999999999988  65 68899999999999999999999999999999997  999887766654

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=99.46  E-value=8.5e-14  Score=102.57  Aligned_cols=68  Identities=19%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +.++++++||.+++|++++. ++++++.+.+|++.+|++|++||+|||+|.|+||+  ++|.+.+..++..
T Consensus       149 ~g~~~~l~g~~a~~g~~~~~-~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~  218 (296)
T PRK04375        149 AGAMPPLIGWAAVTGSLSWE-ALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILL  218 (296)
T ss_pred             HHHhHHHHHHHHhCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHH
Confidence            45688999999999999886 78899999999999999999999999999999997  9999877765543

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.36  E-value=8e-13  Score=96.22  Aligned_cols=67  Identities=13%  Similarity=0.002  Sum_probs=60.0

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +.++++++||.+++|++++. ++++++...+|+..+|+.|++||+|||+|.|+||+  ++|.|.+..+..
T Consensus       140 ~g~~~~l~g~~a~~g~~~~~-~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~  208 (280)
T TIGR01473       140 AGAVPPLIGWAAVTGSISLG-AWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIA  208 (280)
T ss_pred             HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHH
Confidence            35678899999999999886 78899999999999999999999999999999997  999988766543

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=99.31  E-value=3.4e-12  Score=96.39  Aligned_cols=68  Identities=6%  Similarity=-0.080  Sum_probs=60.2

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++++.+++++.++.+++++. .+.+++...+|++++|++|++||+|+|+|.|+||+  +||.|.+..++..
T Consensus       162 ~~~~~~~~~~~a~~g~~~~~-~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~  231 (331)
T PRK12392        162 SYGFITFLSANALFSDIRPE-VVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFI  231 (331)
T ss_pred             HHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHH
Confidence            46677788888888888876 67889999999999999999999999999999997  9999999887654

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.28  E-value=5.3e-12  Score=93.89  Aligned_cols=64  Identities=14%  Similarity=0.013  Sum_probs=53.6

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI   67 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~   67 (77)
                      ++++.++.+| +++|++++. .+.+++.+.+|+..+|++|++||+|||+|.|+||+  +||.+.+..+
T Consensus       158 ~~~~~~~~g~-~~~g~~~~~-~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~  223 (297)
T PRK12871        158 DFTLFPAAGY-LCYGQPDMT-ALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYW  223 (297)
T ss_pred             HHHHHHHHHH-HHhCCCcHH-HHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHH
Confidence            3556556665 468888876 78889999999999999999999999999999997  9998876643

>PLN02776 prenyltransferase

Probab=99.22  E-value=1.9e-11  Score=93.26  Aligned_cols=64  Identities=16%  Similarity=0.054  Sum_probs=58.1

Q ss_pred             hhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee----eeccchhhhhhh
Q psy1912           5 YGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV----NFISKSITNIDN   69 (77)
Q Consensus         5 ~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si----~fG~~~~~~~~~   69 (77)
                      +++++||+|++|++++. +++||+++++|+..+|+.||+||+|||+|.|++.+    .+|.+.++.+..
T Consensus       136 ~ppL~Gw~Avtg~~~~~-~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~  203 (341)
T PLN02776        136 IPPLMGWAAASGQLDAG-AMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALR  203 (341)
T ss_pred             HHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHH
Confidence            78999999999999997 79999999999999999999999999999999875    477787777664

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.20  E-value=2.9e-11  Score=90.77  Aligned_cols=59  Identities=12%  Similarity=-0.049  Sum_probs=48.3

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           9 MGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         9 ~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ..+.++.|+..   .+..+++.++|++++|++|++||.|+|+|.|+||+  +||.|.+.+++..
T Consensus       160 ~~~~~~~g~~~---~~~~l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~  220 (292)
T PRK13595        160 ALPALALGAPV---PWPPLLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALA  220 (292)
T ss_pred             HHHHHHcCCcc---hHHHHHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHH
Confidence            34455666532   23445788999999999999999999999999998  9999999998764

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.15  E-value=5.8e-11  Score=88.65  Aligned_cols=65  Identities=18%  Similarity=0.004  Sum_probs=58.9

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI   67 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~   67 (77)
                      +.++++++||.+++|++++. .+++++...+|+..+|+.+|++|+|||+|.|++++  ++|.+.+...
T Consensus       152 ~ga~p~l~G~~a~~g~~~~~-~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~  218 (306)
T PRK13362        152 SGAMPPVVGYCAVTGQFDAG-ALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLH  218 (306)
T ss_pred             HHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHH
Confidence            35788999999999999987 78999999999999999999999999999999997  9998766553

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.11  E-value=1.5e-10  Score=85.77  Aligned_cols=63  Identities=13%  Similarity=0.008  Sum_probs=54.0

Q ss_pred             hhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           5 YGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         5 ~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++++++|.+++|++++   ..++++..+|+.++|++|+.||+|+|+|.|+||+  +||.|.+..++..
T Consensus       152 ~~~~~~y~~~tg~~~~---~~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~  216 (282)
T PRK12875        152 LPGVAAYALVSGSLPP---LLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAA  216 (282)
T ss_pred             HHHHHHHHHHcCCCcH---HHHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHH
Confidence            5667889999988754   4477788999999999999999999999999997  9999988876543

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=99.04  E-value=2.9e-10  Score=82.28  Aligned_cols=64  Identities=11%  Similarity=-0.082  Sum_probs=53.5

Q ss_pred             ehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         4 ~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +..++++|.++++..+ . .+.++...++|+.++|++|++||+|||+|.|++++  ++|.|.+..+..
T Consensus       140 ~~~~~~g~~~~~~~~~-~-~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~  205 (279)
T PRK12884        140 GMTFIFGGIAVGELNE-A-VILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAA  205 (279)
T ss_pred             HHHHHHHHHHhCCCch-H-HHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHH
Confidence            3456778887776533 3 68888999999999999999999999999999998  999998887654

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=99.02  E-value=5.2e-10  Score=81.93  Aligned_cols=67  Identities=21%  Similarity=0.059  Sum_probs=57.6

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +.++++++||++++|++++. ++++++...+|+....-..+.+|+|||+|.|+||+  ++|.|.+..+..
T Consensus       141 ~g~~~~l~g~~a~~g~~~~~-~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~  209 (279)
T PRK12869        141 AGNAAALAGYASGTGSLDLE-AVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAIS  209 (279)
T ss_pred             HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHH
Confidence            45788999999999999886 78889999999999865557799999999999996  999988776543

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=98.96  E-value=9.2e-10  Score=79.93  Aligned_cols=62  Identities=13%  Similarity=-0.092  Sum_probs=49.6

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +.++.+.+...++ ..+++++..++|+..+|++|++||+|+|+|.|+|++  ++|.|.+..++..
T Consensus       145 ~~g~~~~~~~~~~-~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~  208 (276)
T PRK12882        145 LFGGAAVGTEGLL-ALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAA  208 (276)
T ss_pred             HHHHHHhcccchH-HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHH
Confidence            4455555433333 367889999999999999999999999999999997  9999988876543

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=98.95  E-value=7.6e-10  Score=80.60  Aligned_cols=65  Identities=12%  Similarity=-0.005  Sum_probs=55.4

Q ss_pred             eehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           3 FNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         3 f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++..+++||.++++.  .. .+.+++..++|+..+|++|.+||+|+|++.|+|++  ++|.|.+..++..
T Consensus       139 ~G~~~~~g~~~~~~~--~~-~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~  205 (279)
T PRK09573        139 TGLSFIFGGLAVFNV--LR-IIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKI  205 (279)
T ss_pred             HHHHHHHHHHHHccc--hH-HHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHH
Confidence            456688899988873  33 56789999999999999999999999999999997  9999988877654

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=98.91  E-value=2.2e-09  Score=79.88  Aligned_cols=62  Identities=8%  Similarity=-0.014  Sum_probs=52.8

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ..|...+++.+++. .+.+..++.+|+.++|.+|++||.|.|++.|+||+  ++|.|.+..++..
T Consensus       148 v~G~~~~~~~~~~~-~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~  211 (282)
T PRK13105        148 LYGLVLAGAPFTAA-LWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVG  211 (282)
T ss_pred             HHHHHHhhccccHH-HHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHH
Confidence            34444456677765 67889999999999999999999999999999998  9999999988764

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=98.89  E-value=2e-09  Score=80.37  Aligned_cols=66  Identities=9%  Similarity=0.007  Sum_probs=51.8

Q ss_pred             ehhhHHHHHHhhC---CCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912           4 NYGALMGYSAVTG---CVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus         4 ~~g~l~~~~av~g---~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++|+.+.+.+..+   .++.. .+++++.+++|++++|++|+.||+|+|++.|+||+  ++|.|.+..+...
T Consensus       163 ~~g~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~  233 (308)
T PRK12887        163 NLGLFLHFQWLLGGSVLIPPT-VWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCW  233 (308)
T ss_pred             HHHHHHHHHHHHhccccCcHH-HHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHH
Confidence            3455555544332   44454 57788899999999999999999999999999997  9999999876654

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=98.69  E-value=4.8e-08  Score=72.83  Aligned_cols=62  Identities=16%  Similarity=-0.021  Sum_probs=51.7

Q ss_pred             hHHHHHHhhC-CCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           7 ALMGYSAVTG-CVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         7 ~l~~~~av~g-~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      +++++.++++ ..++. .+++++...+|+..+|++|.+||+|+|++.|+|++  ++|.|.+..+..
T Consensus       175 ~~~g~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~  239 (314)
T PRK07566        175 WWAGAAAFGAGLPSWP-IVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIAC  239 (314)
T ss_pred             HHHHHHHhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHH
Confidence            3666777763 56665 67778888899999999999999999999999997  999998877653

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=98.65  E-value=8.1e-08  Score=70.05  Aligned_cols=59  Identities=12%  Similarity=-0.084  Sum_probs=50.8

Q ss_pred             HHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          11 YSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        11 ~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +...++++++. .+++.+...+|+..+++++..||+|+|++.|.+++  ++|.|.+..+...
T Consensus       159 ~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~  219 (293)
T PRK06080        159 YYLQAGTVDSA-VFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAA  219 (293)
T ss_pred             HHHhcCCCCHH-HHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHH
Confidence            44455677776 78889999999999999999999999999999997  9999998877654

>PLN00012 chlorophyll synthetase; Provisional

Probab=98.53  E-value=2.5e-07  Score=71.25  Aligned_cols=55  Identities=13%  Similarity=-0.084  Sum_probs=49.0

Q ss_pred             HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhh
Q psy1912          13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNID   68 (77)
Q Consensus        13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~   68 (77)
                      +++|++++. .+.+++...+|++..++++.+||+|+|+|.|++|+  +||.+.+..+.
T Consensus       245 a~~g~~s~~-~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~  301 (375)
T PLN00012        245 ALFGTLTPD-VVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWIC  301 (375)
T ss_pred             HHcCCCCHH-HHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHH
Confidence            667888876 67888888999999999999999999999999997  99998887765

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=98.46  E-value=5.1e-07  Score=67.13  Aligned_cols=57  Identities=12%  Similarity=-0.137  Sum_probs=50.1

Q ss_pred             HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +++|++++. .+.+.+...+|+...++++..+|+|+|+|.|.|++  ++|.|.+..+...
T Consensus       176 a~~g~~~~~-~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~  234 (306)
T TIGR02056       176 ALFGELNPD-IAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVG  234 (306)
T ss_pred             HHhCCCcHH-HHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHH
Confidence            556888886 67888888999999999999999999999999997  9999988877653

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=98.27  E-value=1.2e-06  Score=63.66  Aligned_cols=60  Identities=10%  Similarity=-0.012  Sum_probs=44.9

Q ss_pred             hHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912           7 ALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus         7 ~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      ++.|+.++ +++++. .++. ...++|+...+.+|..||+|+|+|.|++++  .+|.|.+..+..
T Consensus       143 ~~~g~~a~-~~~~~~-~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~  204 (277)
T PRK12883        143 PIYGAIAV-GRIGLA-GYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGA  204 (277)
T ss_pred             HHHHHHHh-ccccHH-HHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHH
Confidence            34566665 666664 3332 336778888888888999999999999997  999988776654

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=98.25  E-value=2.3e-06  Score=62.33  Aligned_cols=54  Identities=9%  Similarity=-0.106  Sum_probs=46.4

Q ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          16 GCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        16 g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      +++++. .+.+.+...+|+..+++++.++|.|+|++.|.|++  ++|.|.+..+...
T Consensus       157 ~~~~~~-~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~  212 (283)
T TIGR01476       157 APLTWQ-SVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVT  212 (283)
T ss_pred             CCCCHH-HHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHH
Confidence            456665 56677888899999999999999999999999997  9999988877544

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=98.14  E-value=6.6e-06  Score=60.89  Aligned_cols=56  Identities=5%  Similarity=-0.295  Sum_probs=48.2

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchh
Q psy1912           8 LMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSI   64 (77)
Q Consensus         8 l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~   64 (77)
                      +.++...++++++. .+...+...+|+.....++..||+|+|+|.|.||+  +||.|.+
T Consensus       159 lg~~~~~~~~~~~~-~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a  216 (296)
T PRK05951        159 MGLIYVWLGNLSSP-NLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA  216 (296)
T ss_pred             HHHHHHHhCcccHH-HHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH
Confidence            34455667778776 67778888999999999999999999999999997  9999988

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=98.01  E-value=1.5e-05  Score=57.70  Aligned_cols=60  Identities=5%  Similarity=-0.204  Sum_probs=45.4

Q ss_pred             HHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          10 GYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        10 ~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++...++.+++. .+...+..++|+...+.++..+|+|.|+|.|++++  ++|.|.+..+...
T Consensus       151 ~~~~~~~~~~~~-~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~  212 (285)
T PRK12872        151 GVYYYQLTIFSL-LLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLI  212 (285)
T ss_pred             HHHhcccccchH-HHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHH
Confidence            444445444554 45556666777788888888999999999999998  9999988877653

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=97.82  E-value=2.3e-05  Score=54.53  Aligned_cols=64  Identities=11%  Similarity=-0.143  Sum_probs=49.2

Q ss_pred             ceehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhh
Q psy1912           2 TFNYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITN   66 (77)
Q Consensus         2 ~f~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~   66 (77)
                      +++..+++++.+.+++.+.+ .+.+.....+|....-...-++|.|+|+|.|.+++  ++|.+.+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  128 VFGLLILLGAYAAGGDPPPP-PFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             hhhHhhhhhhhhcCCcccHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            34566778888887776554 45566666777777777778999999999999997  899887764

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=96.37  E-value=0.0061  Score=45.31  Aligned_cols=60  Identities=7%  Similarity=-0.228  Sum_probs=42.6

Q ss_pred             HHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhhc
Q psy1912          11 YSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNVN   71 (77)
Q Consensus        11 ~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~~   71 (77)
                      +-..++++++. .+..-+...+.+...=.+--.-|.|.|+|.|-|.+  ++|.|.+..+-...
T Consensus       152 ~yvqt~~~~~~-~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l  213 (285)
T TIGR02235       152 LYAQSQSFSLI-PWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWV  213 (285)
T ss_pred             HHHhCCcCcHH-HHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHH
Confidence            44446677775 45555555555555555555679999999999997  99999998876543

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=96.31  E-value=0.013  Score=43.48  Aligned_cols=59  Identities=8%  Similarity=-0.108  Sum_probs=45.0

Q ss_pred             HHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912          10 GYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus        10 ~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      ++...++++++. .+...+.+.+.+..-=.+--..|.|.|+|.|-+++  ++|.|.+..+-.
T Consensus       154 ~~yvq~~~~~~~-~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~  214 (284)
T TIGR00751       154 TQYLQAHRVDWV-GILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQ  214 (284)
T ss_pred             HHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHH
Confidence            344557778876 45555666677766666788899999999999997  999999887644

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=95.84  E-value=0.017  Score=43.42  Aligned_cols=57  Identities=7%  Similarity=-0.236  Sum_probs=38.2

Q ss_pred             HhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          13 AVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        13 av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ..++++++. .+..-+...+.+...=.+-=..|+|.|+|.|-+.+  ++|.|.+..+-..
T Consensus       167 v~t~~~~~~-~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~  225 (304)
T PRK07419        167 SQTPSWSLI-PLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPW  225 (304)
T ss_pred             HhcCCCCHH-HHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHH
Confidence            345666664 44444444444444434445569999999999996  9999998876544

>PLN02922 prenyltransferase

Probab=94.92  E-value=0.05  Score=41.07  Aligned_cols=48  Identities=4%  Similarity=-0.269  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          23 CLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        23 ~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      .+...+...+++...=.+-=.-|.|.|+|.|-+++  ++|.|.+..+-.+
T Consensus       190 ~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~  239 (315)
T PLN02922        190 VLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRW  239 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHH
Confidence            45667777777777777777889999999999996  9999999877554

>PRK13591 ubiA prenyltransferase; Provisional

Probab=94.89  E-value=0.094  Score=40.03  Aligned_cols=32  Identities=6%  Similarity=-0.145  Sum_probs=28.4

Q ss_pred             HHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          39 TIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        39 TIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ++.-..|.|-|++.|.+++  .+|.+.+..+...
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~  230 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLG  230 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHH
Confidence            6888999999999999997  9999998877653

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=94.61  E-value=0.14  Score=38.61  Aligned_cols=45  Identities=7%  Similarity=-0.246  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhhh
Q psy1912          26 LYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDNV   70 (77)
Q Consensus        26 L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~~   70 (77)
                      ..+...+.+..-=.+--.-|.|.|+|.|-+.+  ++|.|.+..+-.+
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~  240 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAI  240 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHH
Confidence            34444444444445555679999999999997  9999998876543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=93.77  E-value=0.22  Score=38.11  Aligned_cols=58  Identities=14%  Similarity=-0.026  Sum_probs=40.9

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhh
Q psy1912           9 MGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNI   67 (77)
Q Consensus         9 ~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~   67 (77)
                      +++-.-+++++|. .+..-+.+.+=+...--.--.-|.|+|+|.|=+++  ++|.|.+..+
T Consensus       165 g~~yiqt~~~~~~-~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l  224 (303)
T COG1575         165 GAYYIQTGRLSWA-ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKL  224 (303)
T ss_pred             HHHHHhcccchHH-HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHH
Confidence            3333345566775 45555555555555566667899999999999997  9999887654

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=93.23  E-value=0.029  Score=42.97  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             ehhhHHHHHHhhCCCChhhHHHHHHHHHHHHHHHHHHhhccChHHHHHcCcce
Q psy1912           4 NYGALMGYSAVTGCVDWSLCLPLYLSGICWTIIYDTIYAHQVRIHLIDLCENG   56 (77)
Q Consensus         4 ~~g~l~~~~av~g~~~~~~~~~L~~a~~~Wti~yDTIYA~QD~edD~k~Gv~S   56 (77)
                      +.++++||+|++|++++. .++||+-.++||--===-=|+-=+||=++.|+-=
T Consensus       159 a~PpliGwaAvtg~~~~~-a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPM  210 (304)
T COG0109         159 AMPPLIGWAAVTGSISLG-AILLFAIIFLWTPPHFWALALKYKDDYKAAGIPM  210 (304)
T ss_pred             cccccceeeeeeCCCCch-HHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCc
Confidence            567899999999999997 7889999999985422223555577778888743

>PLN02878 homogentisate phytyltransferase

Probab=93.05  E-value=0.3  Score=37.00  Aligned_cols=41  Identities=2%  Similarity=-0.228  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHhhccChHHHHHcCccee--eeccchhhhhhh
Q psy1912          29 SGICWTIIYDTIYAHQVRIHLIDLCENGV--NFISKSITNIDN   69 (77)
Q Consensus        29 a~~~Wti~yDTIYA~QD~edD~k~Gv~Si--~fG~~~~~~~~~   69 (77)
                      ...+-..+.+++=-.+|.|-|++.|++++  ++|.+.+..++.
T Consensus       164 f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~  206 (280)
T PLN02878        164 FMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCV  206 (280)
T ss_pred             HHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHH
Confidence            44566667789999999999999999997  999999888764

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00