Psyllid ID: psy1930

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mklkrrkeRENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Flexible Loop (DISEMBL)
mklkrrkerenkkkkkkkkkkkkkkkkkkkkkkkrvLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Low Complexity Region (SEG)
MKLKRRKERENkkkkkkkkkkkkkkkkkkkkkkkRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFvvavggtvigviwgFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Disordered region (IsUnstruct)
***********************************VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRT***
Disordered Region (DISOPRED)
****************************KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Disordered Region (DISEMBL)
**********************************RVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Disordered Region (DISPRO)
*K**RRKERENKKKKKKKKK****KKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	195	2.2.26 [Sep-21-2011]
P48764	834	Sodium/hydrogen exchanger	yes	N/A	0.815	0.190	0.575	1e-50
P48763	813	Sodium/hydrogen exchanger	yes	N/A	0.805	0.193	0.540	2e-50
P50482	809	Sodium/hydrogen exchanger	yes	N/A	0.805	0.194	0.534	1e-49
Q9UBY0	812	Sodium/hydrogen exchanger	no	N/A	0.805	0.193	0.534	4e-49
P26433	831	Sodium/hydrogen exchanger	no	N/A	0.815	0.191	0.575	7e-49
Q01345	759	Na(+)/H(+) exchanger beta	N/A	N/A	0.805	0.206	0.534	1e-48
P26432	832	Sodium/hydrogen exchanger	yes	N/A	0.815	0.191	0.556	2e-48
Q28362	839	Sodium/hydrogen exchanger	N/A	N/A	0.815	0.189	0.562	2e-48
Q9Z0X2	898	Sodium/hydrogen exchanger	no	N/A	0.815	0.177	0.525	4e-45
Q6AI14	798	Sodium/hydrogen exchanger	no	N/A	0.810	0.197	0.503	2e-44

>sp|P48764|SL9A3_HUMAN Sodium/hydrogen exchanger 3 OS=Homo sapiens GN=SLC9A3 PE=1 SV=2

 Score =  199 bits (505), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 127/160 (79%), Gaps = 1/160 (0%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++FE++  +G +NV  VD + G+ SFFVV++GGT++GV++ FL   VTRFT  VR+I
Sbjct: 226 VLYNVFESFVALGGDNVTGVDCVKGIVSFFVVSLGGTLVGVVFAFLLSLVTRFTKHVRII 285

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP F+F+++YL+YLT+E+  +S ILAITFCGI  + YV+ANIS +S TTV+Y MKML+SS
Sbjct: 286 EPGFVFIISYLSYLTSEMLSLSAILAITFCGICCQKYVKANISEQSATTVRYTMKMLASS 345

Query: 156 SETIIFMFLGISTISD-AHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLGIS ++     WNTAFV+LT+ F S+YR +G
Sbjct: 346 AETIIFMFLGISAVNPFIWTWNTAFVLLTLVFISVYRAIG 385

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.
Homo sapiens (taxid: 9606)

>sp|P48763|SL9A2_RAT Sodium/hydrogen exchanger 2 OS=Rattus norvegicus GN=Slc9a2 PE=1 SV=1

 Score =  198 bits (503), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/159 (54%), Positives = 125/159 (78%), Gaps = 2/159 (1%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++F+++ +M    +  VD+ +G+A+FFVV +GG +IG++ GF+  F TRFT+ +RVI
Sbjct: 253 VLYNLFKSFCQM--KTIQTVDVFAGIANFFVVGIGGVLIGILLGFIAAFTTRFTHNIRVI 310

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+F+F+ +YL+Y+TAE+FH+SGI+AIT C +TM  YVE N+S KS+TT+KY MKMLSS 
Sbjct: 311 EPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSV 370

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SET+IF+F+G+ST+   H WN AFV  T+ FC ++R LG
Sbjct: 371 SETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALG 409

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Seems to play an important role in colonic sodium absorption.

Rattus norvegicus (taxid: 10116)

>sp|P50482|SL9A2_RABIT Sodium/hydrogen exchanger 2 OS=Oryctolagus cuniculus GN=SLC9A2 PE=2 SV=1

 Score =  195 bits (496), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++F+++ +M    +  +D+ +G+A+FFVV +GG +IG+  GF+  F TRFT+ +RVI
Sbjct: 252 VLYNLFKSFCQM--KTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTHNIRVI 309

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+F+F+ +YL+Y+TAE+FH+SGI+AIT C +TM  YVE N+S KS+TT+KY MKMLSS 
Sbjct: 310 EPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSV 369

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SET+IF+F+G+ST+   H WN AFV  T+ FC ++R LG
Sbjct: 370 SETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLIWRALG 408

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Seems to play an important role in colonic sodium absorption.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q9UBY0|SL9A2_HUMAN Sodium/hydrogen exchanger 2 OS=Homo sapiens GN=SLC9A2 PE=2 SV=1

 Score =  194 bits (493), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 124/159 (77%), Gaps = 2/159 (1%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++F+++ +M    +  +D+ +G+A+FFVV +GG +IG+  GF+  F TRFT+ +RVI
Sbjct: 252 VLYNLFKSFCQM--KTIETIDVFAGIANFFVVGIGGVLIGIFLGFIAAFTTRFTHNIRVI 309

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+F+F+ +YL+Y+TAE+FH+SGI+AIT C +TM  YVE N+S KS+TT+KY MKMLSS 
Sbjct: 310 EPLFVFLYSYLSYITAEMFHLSGIMAITACAMTMNKYVEENVSQKSYTTIKYFMKMLSSV 369

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SET+IF+F+G+ST+   H WN AFV  T+ FC ++R LG
Sbjct: 370 SETLIFIFMGVSTVGKNHEWNWAFVCFTLAFCLMWRALG 408

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Seems to play an important role in colonic sodium absorption.

Homo sapiens (taxid: 9606)

>sp|P26433|SL9A3_RAT Sodium/hydrogen exchanger 3 OS=Rattus norvegicus GN=Slc9a3 PE=1 SV=1

 Score =  193 bits (490), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++FE++  +G + V  VD + G+ SFFVV++GGT++GVI+ FL   VTRFT  VR+I
Sbjct: 223 VLYNVFESFVTLGGDAVTGVDCVKGIVSFFVVSLGGTLVGVIFAFLLSLVTRFTKHVRII 282

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP F+FV++YL+YLT+E+  +S ILAITFCGI  + YV+ANIS +S TTV+Y MKML+S 
Sbjct: 283 EPGFVFVISYLSYLTSEMLSLSAILAITFCGICCQKYVKANISEQSATTVRYTMKMLASG 342

Query: 156 SETIIFMFLGISTISDA-HVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLGIS +      WNTAFV+LT+ F S+YR +G
Sbjct: 343 AETIIFMFLGISAVDPVIWTWNTAFVLLTLVFISVYRAIG 382

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|Q01345|NHEB_ONCMY Na(+)/H(+) exchanger beta OS=Oncorhynchus mykiss PE=2 SV=1

 Score =  192 bits (488), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/159 (53%), Positives = 123/159 (77%), Gaps = 2/159 (1%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++FE ++++G   VL  D+  G+  FFVV++GG ++G I+GFL  F +RFT+  RVI
Sbjct: 240 VLYNLFEEFSKVGTVTVL--DVFLGVVCFFVVSLGGVLVGAIYGFLAAFTSRFTSHTRVI 297

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+F+F+ +Y+AYL++E+FH+SGI+A+  CG+ M+ YVEANISHKS+TT+KY +KM SS 
Sbjct: 298 EPLFVFLYSYMAYLSSEMFHLSGIMALIACGVVMRPYVEANISHKSYTTIKYFLKMWSSV 357

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SET+IF+FLG+ST++  H WN  FVI T+  C + R LG
Sbjct: 358 SETLIFIFLGVSTVAGPHAWNWTFVITTVILCLVSRVLG 396

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient.

Oncorhynchus mykiss (taxid: 8022)

>sp|P26432|SL9A3_RABIT Sodium/hydrogen exchanger 3 OS=Oryctolagus cuniculus GN=SLC9A3 PE=1 SV=1

 Score =  191 bits (486), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++F+++  +G + V  VD + G+ SFFVV++GGT++GV++ FL   VTRFT  VRVI
Sbjct: 225 VLYNVFQSFVTLGGDKVTGVDCVKGIVSFFVVSLGGTLVGVVFAFLLSLVTRFTKHVRVI 284

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP F+F+++YL+YLT+E+  +S ILAITFCGI  + YV+ANIS +S TTV+Y MKML+S 
Sbjct: 285 EPGFVFIISYLSYLTSEMLSLSSILAITFCGICCQKYVKANISEQSATTVRYTMKMLASG 344

Query: 156 SETIIFMFLGISTISD-AHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLGIS +      WNTAFV+LT+ F S++R +G
Sbjct: 345 AETIIFMFLGISAVDPLIWTWNTAFVLLTLLFVSVFRAIG 384

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q28362|SL9A3_DIDVI Sodium/hydrogen exchanger 3 OS=Didelphis virginiana GN=SLC9A3 PE=1 SV=1

 Score =  191 bits (486), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY++F+++  +G + V  VD + G+ SFFVV++GGT+IG+I+ FL   VTRFT  VR+I
Sbjct: 231 VLYNVFDSFVSLGADKVTGVDCVKGIVSFFVVSLGGTLIGIIFAFLLSLVTRFTKHVRII 290

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP F+F+++YL+YLT+E+  +S ILAITFCGI  + YV+ANIS +S TTV+Y MKML+S 
Sbjct: 291 EPGFVFIISYLSYLTSEMLSLSAILAITFCGICCQKYVKANISEQSATTVRYTMKMLASG 350

Query: 156 SETIIFMFLGISTISDA-HVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLGIS +  A   WNTAF++LT+ F S+YR +G
Sbjct: 351 AETIIFMFLGISAVDPAIWTWNTAFILLTLVFISVYRAIG 390

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Didelphis marsupialis virginiana (taxid: 9267)

>sp|Q9Z0X2|SL9A5_RAT Sodium/hydrogen exchanger 5 OS=Rattus norvegicus GN=Slc9a5 PE=1 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/160 (52%), Positives = 112/160 (70%), Gaps = 1/160 (0%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY +  ++ EMG  NV   D L G+AS FVV++GG  +G+++ FL    TRFT  VR+I
Sbjct: 221 VLYKVCNSFVEMGSANVQATDYLKGVASLFVVSLGGAAVGLVFAFLLALTTRFTKRVRII 280

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+ +F++AY AYLTAE+  +S ILA+T CG+  K YVEANISHKS T VKY MK L+SS
Sbjct: 281 EPLLVFLLAYAAYLTAEMASLSAILAVTMCGLGCKKYVEANISHKSRTAVKYTMKTLASS 340

Query: 156 SETIIFMFLGISTI-SDAHVWNTAFVILTIFFCSLYRTLG 194
           +ET+IFM LGIS + S    W++  V+ T+FF   +R LG
Sbjct: 341 AETVIFMLLGISAVDSSKWAWDSGLVLGTLFFILFFRALG 380

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction.

Rattus norvegicus (taxid: 10116)

>sp|Q6AI14|SL9A4_HUMAN Sodium/hydrogen exchanger 4 OS=Homo sapiens GN=SLC9A4 PE=1 SV=2

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 80/159 (50%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 36  VLYHMFEAYTEMGH-NNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRV 94
           VLY+M  A+T+M    ++  VD+L+G A F VV +GG + G+++GF++ F+TRFT  +  
Sbjct: 241 VLYNMLIAFTKMHKFEDIETVDILAGCARFIVVGLGGVLFGIVFGFISAFITRFTQNISA 300

Query: 95  IEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSS 154
           IEP+ +F+ +YL+YL AE  ++SGILAIT C +TMK YVE N+S  S+TT+KY MKMLSS
Sbjct: 301 IEPLIVFMFSYLSYLAAETLYLSGILAITACAVTMKKYVEENVSQTSYTTIKYFMKMLSS 360

Query: 155 SSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTL 193
            SET+IF+F+G+ST+   H WN AF+  T+ FC ++R +
Sbjct: 361 VSETLIFIFMGVSTVGKNHEWNWAFICFTLAFCQIWRAI 399

Involved in pH regulation to eliminate acids generated by active metabolism or to counter adverse environmental conditions. Major proton extruding system driven by the inward sodium ion chemical gradient. Plays an important role in signal transduction. May play a specialized role in the kidney in rectifying cell volume in response to extreme fluctuations of hyperosmolar-stimulated cell shrinkage. Is relatively amiloride and ethylisopropylamiloride (EIPA) insensitive. Can be activated under conditions of hyperosmolar-induced cell shrinkage in a sustained intracellular acidification-dependence manner. Activated by 4,4'-diisothiocyanostilbene-2,2'-disulfonic acid (DIDS) in a sustained intracellular acidification-dependence manner. Affects potassium/proton exchange as well as sodium/proton and lithium/proton exchange. In basolateral cell membrane, participates in homeostatic control of intracellular pH, and may play a role in proton extrusion in order to achieve transepithelial HCO3(-) secretion. In apical cell membrane may be involved in mediating sodium absorption. Requires for normal levels of gastric acid secretion, secretory membrane development, parietal cell maturation and/or differentiation and at least secondarily for chief cell differentiation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
242019593	1064	sodium/hydrogen exchanger, putative [Ped	0.815	0.149	0.817	2e-75
332031580	1047	Sodium/hydrogen exchanger 3 [Acromyrmex	0.815	0.151	0.798	1e-74
322802306	1023	hypothetical protein SINV_10800 [Solenop	0.815	0.155	0.792	3e-73
328779129	1042	PREDICTED: sodium/hydrogen exchanger 3 [	0.815	0.152	0.811	3e-73
118791508	1222	AGAP009036-PA [Anopheles gambiae str. PE	0.815	0.130	0.779	5e-73
37727744	1221	alkali metal ion/proton exchanger 3 [Ano	0.815	0.130	0.779	5e-73
383848213	1039	PREDICTED: sodium/hydrogen exchanger 3-l	0.815	0.153	0.805	1e-72
8886699	1179	Na+/H+ antiporter [Aedes aegypti]	0.815	0.134	0.773	2e-72
157119479	1179	sodium/hydrogen exchanger 3 (nhe3) [Aede	0.815	0.134	0.773	2e-72
321459421	949	hypothetical protein DAPPUDRAFT_217278 [	0.815	0.167	0.786	2e-72

>gi|242019593|ref|XP_002430244.1| sodium/hydrogen exchanger, putative [Pediculus humanus corporis] gi|212515351|gb|EEB17506.1| sodium/hydrogen exchanger, putative [Pediculus humanus corporis]

 Score =  287 bits (734), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 147/159 (92%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLYHMFEAY EMG +N+LY D+LSGLASF VVA+GGT+IG++WGFLTG VTR+T+EVRVI
Sbjct: 273 VLYHMFEAYNEMGPSNILYTDVLSGLASFLVVALGGTIIGIVWGFLTGLVTRYTDEVRVI 332

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS
Sbjct: 333 EPIFIFVMAYLAYLNAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 392

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T+ + H WNT FV+LTI FCS++R +G
Sbjct: 393 SETIIFMFLGVATVGNKHEWNTWFVLLTIIFCSVFRVIG 431

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332031580|gb|EGI71052.1| Sodium/hydrogen exchanger 3 [Acromyrmex echinatior]

 Score =  284 bits (727), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 127/159 (79%), Positives = 148/159 (93%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLYHMFE Y+EMG + ++Y D+LSGLASF VVA+GGTVIGV+WGF TGFVTRFT++VRVI
Sbjct: 318 VLYHMFETYSEMGPSRIIYTDVLSGLASFLVVAIGGTVIGVVWGFATGFVTRFTHQVRVI 377

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL+AEIFH+SGI+AITFCGITMKNYVEANISHKSHTTVKY MKMLSSS
Sbjct: 378 EPIFIFVMAYLAYLSAEIFHLSGIMAITFCGITMKNYVEANISHKSHTTVKYTMKMLSSS 437

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T+++AH WNT FV++TI FCS+YR +G
Sbjct: 438 SETIIFMFLGVATVNNAHNWNTWFVVMTIVFCSVYRAMG 476

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322802306|gb|EFZ22702.1| hypothetical protein SINV_10800 [Solenopsis invicta]

 Score =  280 bits (715), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 126/159 (79%), Positives = 146/159 (91%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLYHMFE Y+EMG + + Y D+LSGLASF VVA+GGT+IG++WGF T FVTRFT++VRVI
Sbjct: 327 VLYHMFETYSEMGPSRIAYTDVLSGLASFLVVAIGGTIIGIVWGFATSFVTRFTHQVRVI 386

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL+AEIFH+SGILAITFCGITMKNYVEANISHKSHTTVKY MKMLSSS
Sbjct: 387 EPIFIFVMAYLAYLSAEIFHLSGILAITFCGITMKNYVEANISHKSHTTVKYTMKMLSSS 446

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T+++AH WNT FV++TI FCS+YR LG
Sbjct: 447 SETIIFMFLGVATVNNAHNWNTWFVVMTIVFCSVYRALG 485

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779129|ref|XP_391857.3| PREDICTED: sodium/hydrogen exchanger 3 [Apis mellifera]

 Score =  280 bits (715), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 145/159 (91%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLYHMFEAY E+G   +LY D+LSGLASFFVVA+GGT+IGVIWGF TGFVTRFT++VRVI
Sbjct: 308 VLYHMFEAYNEIGPTEILYTDVLSGLASFFVVAIGGTIIGVIWGFGTGFVTRFTHQVRVI 367

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMS ILAITFCGITMKNYVEANISHKSHTTVKY MKMLSSS
Sbjct: 368 EPIFIFVMAYLAYLNAEIFHMSSILAITFCGITMKNYVEANISHKSHTTVKYTMKMLSSS 427

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T+++ H WNT FV++TI FCS+YR +G
Sbjct: 428 SETIIFMFLGVATVNNHHDWNTWFVVMTIVFCSIYRIVG 466

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118791508|ref|XP_552951.2| AGAP009036-PA [Anopheles gambiae str. PEST] gi|116117635|gb|EAL39028.2| AGAP009036-PA [Anopheles gambiae str. PEST]

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 124/159 (77%), Positives = 146/159 (91%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           V+YHMFE Y E+G + ++ VD++SG+ASFFVVA+GGT+IGVIWGFLTG VTRFT+ VRVI
Sbjct: 417 VMYHMFEVYNEIGASEIIAVDIVSGIASFFVVALGGTIIGVIWGFLTGLVTRFTDHVRVI 476

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMSGILAITFCGITMKNYVE N+SHKSHTT+KYA+KMLSSS
Sbjct: 477 EPIFIFVMAYLAYLNAEIFHMSGILAITFCGITMKNYVEQNVSHKSHTTIKYALKMLSSS 536

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLG++T+++ HVWNT FV+LTI FCS+YR LG
Sbjct: 537 AETIIFMFLGVATVNNKHVWNTWFVLLTIIFCSVYRILG 575

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|37727744|gb|AAO34131.1| alkali metal ion/proton exchanger 3 [Anopheles gambiae]

 Score =  279 bits (713), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 124/159 (77%), Positives = 146/159 (91%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           V+YHMFE Y E+G + ++ VD++SG+ASFFVVA+GGT+IGVIWGFLTG VTRFT+ VRVI
Sbjct: 416 VMYHMFEVYNEIGASEIIAVDIVSGIASFFVVALGGTIIGVIWGFLTGLVTRFTDHVRVI 475

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMSGILAITFCGITMKNYVE N+SHKSHTT+KYA+KMLSSS
Sbjct: 476 EPIFIFVMAYLAYLNAEIFHMSGILAITFCGITMKNYVEQNVSHKSHTTIKYALKMLSSS 535

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLG++T+++ HVWNT FV+LTI FCS+YR LG
Sbjct: 536 AETIIFMFLGVATVNNKHVWNTWFVLLTIIFCSVYRILG 574

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848213|ref|XP_003699746.1| PREDICTED: sodium/hydrogen exchanger 3-like [Megachile rotundata]

 Score =  277 bits (709), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 128/159 (80%), Positives = 144/159 (90%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLYHMFEAY E+G   +LY DLL+GLASFFVVA+GGT+IGVIWGF TGFVTRFT++VRVI
Sbjct: 297 VLYHMFEAYNEIGPTEILYTDLLTGLASFFVVAIGGTIIGVIWGFATGFVTRFTHQVRVI 356

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMS ILAITFCGITMKNYVEANISHKSHTTVKY MKMLSSS
Sbjct: 357 EPIFIFVMAYLAYLNAEIFHMSSILAITFCGITMKNYVEANISHKSHTTVKYTMKMLSSS 416

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T+++ H W+T FV +TI FCS+YR +G
Sbjct: 417 SETIIFMFLGVATVNNDHYWDTWFVAMTIVFCSIYRIVG 455

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8886699|gb|AAF80554.1|AF187723_1 Na+/H+ antiporter [Aedes aegypti]

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/159 (77%), Positives = 147/159 (92%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           V+YHMFE+Y E+G +N+  VD++SG+ASFFVVA+GGT+IGVIWGFLTG VTRFT+ VRVI
Sbjct: 421 VMYHMFESYNEIGASNIQVVDIVSGVASFFVVALGGTIIGVIWGFLTGLVTRFTDHVRVI 480

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMSGILAITFCGITMKNYVE N+SHKSHTT+KYA+KMLSSS
Sbjct: 481 EPIFIFVMAYLAYLNAEIFHMSGILAITFCGITMKNYVEQNVSHKSHTTIKYALKMLSSS 540

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLG++T+++ H+WNT FVILTI FCS++R +G
Sbjct: 541 AETIIFMFLGVATVNNRHIWNTWFVILTIVFCSVFRIIG 579

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157119479|ref|XP_001653402.1| sodium/hydrogen exchanger 3 (nhe3) [Aedes aegypti] gi|108883185|gb|EAT47410.1| AAEL001503-PA [Aedes aegypti]

 Score =  277 bits (708), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 123/159 (77%), Positives = 147/159 (92%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           V+YHMFE+Y E+G +N+  VD++SG+ASFFVVA+GGT+IGVIWGFLTG VTRFT+ VRVI
Sbjct: 421 VMYHMFESYNEIGASNIQVVDIVSGVASFFVVALGGTIIGVIWGFLTGLVTRFTDHVRVI 480

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVMAYLAYL AEIFHMSGILAITFCGITMKNYVE N+SHKSHTT+KYA+KMLSSS
Sbjct: 481 EPIFIFVMAYLAYLNAEIFHMSGILAITFCGITMKNYVEQNVSHKSHTTIKYALKMLSSS 540

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           +ETIIFMFLG++T+++ H+WNT FVILTI FCS++R +G
Sbjct: 541 AETIIFMFLGVATVNNRHIWNTWFVILTIVFCSVFRIIG 579

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321459421|gb|EFX70475.1| hypothetical protein DAPPUDRAFT_217278 [Daphnia pulex]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 125/159 (78%), Positives = 143/159 (89%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY+MF+AY  MG  N+ Y D+LSG ASF VVA+GGT+IG+IWGFLTGFVTRFTN VRVI
Sbjct: 289 VLYNMFDAYVGMGQENIKYTDILSGFASFIVVAIGGTLIGIIWGFLTGFVTRFTNHVRVI 348

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EPIFIFVM+YLAYL AEIFHMSGILAITFCGITMKNYVE NIS KSHTT+KYAMKMLSSS
Sbjct: 349 EPIFIFVMSYLAYLNAEIFHMSGILAITFCGITMKNYVEGNISPKSHTTIKYAMKMLSSS 408

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SETIIFMFLG++T++D H WNTAF++LTI FCS++R +G
Sbjct: 409 SETIIFMFLGVNTVNDQHDWNTAFILLTILFCSVFRAIG 447

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50482	SL9A2_RABIT	No assigned EC number	0.5345	0.8051	0.1940	yes	N/A
P26432	SL9A3_RABIT	No assigned EC number	0.5562	0.8153	0.1911	yes	N/A
P48763	SL9A2_RAT	No assigned EC number	0.5408	0.8051	0.1931	yes	N/A
P48764	SL9A3_HUMAN	No assigned EC number	0.575	0.8153	0.1906	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	195
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	1e-68
pfam00999	370	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchang	1e-29
COG0025	429	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiport	3e-14
TIGR00831	525	TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial fo	1e-09
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	9e-07
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	8e-06
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-05
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	2e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	3e-05
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	4e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	5e-05
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	7e-05
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	7e-05
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	8e-05
PRK14552	414	PRK14552, PRK14552, C/D box methylation guide ribo	1e-04
PRK11192	434	PRK11192, PRK11192, ATP-dependent RNA helicase Srm	1e-04
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	1e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	1e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	1e-04
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	1e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	1e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	2e-04
pfam08079	71	pfam08079, Ribosomal_L30_N, Ribosomal L30 N-termin	2e-04
cd13332	198	cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C	2e-04
PRK05326	562	PRK05326, PRK05326, potassium/proton antiporter; R	2e-04
pfam06658	142	pfam06658, DUF1168, Protein of unknown function (D	3e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	3e-04
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	3e-04
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	4e-04
COG3263	574	COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antip	4e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	4e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	5e-04
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	6e-04
PRK04195	482	PRK04195, PRK04195, replication factor C large sub	6e-04
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	6e-04
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	7e-04
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	8e-04
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	9e-04
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.001
pfam08208	193	pfam08208, RNA_polI_A34, DNA-directed RNA polymera	0.001
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.001
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.001
pfam04935	206	pfam04935, SURF6, Surfeit locus protein 6	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.001
pfam08597	242	pfam08597, eIF3_subunit, Translation initiation fa	0.001
pfam10278	178	pfam10278, Med19, Mediator of RNA pol II transcrip	0.002
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.002
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	0.002
pfam07771	120	pfam07771, TSGP1, Tick salivary peptide group 1	0.002
pfam09468	287	pfam09468, RNase_H2-Ydr279, Ydr279p protein family	0.002
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.002
pfam04557	83	pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthe	0.002
PRK11778	330	PRK11778, PRK11778, putative inner membrane peptid	0.002
COG1173	289	COG1173, DppC, ABC-type dipeptide/oligopeptide/nic	0.002
pfam05764	238	pfam05764, YL1, YL1 nuclear protein	0.003
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.003
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.003
PRK04950	213	PRK04950, PRK04950, ProP expression regulator; Pro	0.003
pfam05766	188	pfam05766, NinG, Bacteriophage Lambda NinG protein	0.003
pfam12589	85	pfam12589, WBS_methylT, Methyltransferase involved	0.003
pfam03343	603	pfam03343, SART-1, SART-1 family	0.003
pfam05104	151	pfam05104, Rib_recp_KP_reg, Ribosome receptor lysi	0.003
pfam09428	130	pfam09428, DUF2011, Fungal protein of unknown func	0.004
PTZ00074	135	PTZ00074, PTZ00074, 60S ribosomal protein L34; Pro	0.004
pfam08432	182	pfam08432, DUF1742, Fungal protein of unknown func	0.004
pfam08496	154	pfam08496, Peptidase_S49_N, Peptidase family S49 N	0.004
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.004

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score =  218 bits (557), Expect = 1e-68
 Identities = 90/159 (56%), Positives = 121/159 (76%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VLY+ F  + +     V  VD+  G ASFFVV  GG ++GV++GFL  F+TRFT+ +R I
Sbjct: 179 VLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQI 238

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSS 155
           EP+F+F+++YL+YL AE  H+SGILA+ FCGITMK YVEAN+S +S TT+KY MKMLSS 
Sbjct: 239 EPLFVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSL 298

Query: 156 SETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG 194
           SET+IF+FLG+S +++ H WN AFV+ T+ FC +YR LG
Sbjct: 299 SETLIFIFLGVSLVTENHEWNWAFVVATLSFCVIYRVLG 337

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

>gnl|CDD|216235 pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family

 Score =  111 bits (280), Expect = 1e-29
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 13/161 (8%)

Query: 36  VLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVI 95
           VL  +  A   +G       DL   L  F VVA+GG ++G+++G+L   +TRFT+  R +
Sbjct: 155 VLLAVLLALAGVGGL----SDLGLLLLIFLVVALGGLLLGLVFGWLLRLITRFTSGDREL 210

Query: 96  EPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEAN-ISHKSHTTVKYAMKMLSS 154
           E + +  +A LA L AE+  +SGIL     G+ + NY  AN +S K              
Sbjct: 211 EVLLVLALALLAALLAELLGLSGILGAFLAGLVLSNYAFANELSEKLE-------PFGYG 263

Query: 155 SSETIIFMFLGIST-ISDAHVWNTAFVILTIFFCSLYRTLG 194
               + F+ +G+S  +S   +     V+L +    L + LG
Sbjct: 264 LFLPLFFVSVGLSLDLSSLLLSLLLLVLLLLVAILLGKLLG 304

Na/H antiporters are key transporters in maintaining the pH of actively metabolising cells. The molecular mechanisms of antiport are unclear. These antiporters contain 10-12 transmembrane regions (M) at the amino-terminus and a large cytoplasmic region at the carboxyl terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. Length = 370

>gnl|CDD|223104 COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

 Score = 69.6 bits (171), Expect = 3e-14
 Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 56  DLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV----RVIEPIFIFVMAYLAYLTA 111
            L   L  F + A+GG ++G++ G+L G + R  +       ++E +   ++A+ AYL A
Sbjct: 182 SLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAYLLA 241

Query: 112 EIFHMSGILAITFCGITMKNYVEANISHKSH-TTVKYAMKMLSSSSETIIFMFLG----I 166
           E   +SGILA+   G+ +   V  N+S  S    +    ++L      ++F+ LG    +
Sbjct: 242 EALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPL 301

Query: 167 STISDAHVWNTAFVILTIFFC 187
           S +    +      ++ +   
Sbjct: 302 SLLLALGLLGLLVALVAVLLA 322

Length = 429

>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 55  VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIF 114
            D L+    F VV VGG   G+  G+L   + R   +  ++E     +  +  +L AE F
Sbjct: 169 FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAGFLLAERF 228

Query: 115 HMSGILAITFCGITMKNY-VEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST 168
           H SG++A+   G+ + NY  + ++S  +         ++      IIF+ +G+ T
Sbjct: 229 HFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQT 283

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 525

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 18/34 (52%), Positives = 26/34 (76%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K  ++K  E K +K+KKKKK+KKK KK+KKK ++
Sbjct: 381 KPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 46.1 bits (110), Expect = 3e-06
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 3   LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           L +R E++ K+K+K K KK+ +  K   K++K
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K  E K+K+K+K K KK+ +  K   K+R
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRR 426

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 45.7 bits (109), Expect = 4e-06
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K   +R  KK+K+K+K K KK+ +  K   KR
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 44.9 bits (107), Expect = 8e-06
 Identities = 11/33 (33%), Positives = 20/33 (60%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
             KR +++E +K+K K KK+ +  K   K++K 
Sbjct: 396 LAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKP 428

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
              K  K+   K+ +KK+K+K+K K KK+ +  K +
Sbjct: 387 KTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422

Length = 434

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 18/28 (64%), Positives = 25/28 (89%)

Query: 8   ERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           E+++KKKK +  K++KKKKK+KKKKKKR
Sbjct: 141 EKKHKKKKHEDDKERKKKKKEKKKKKKR 168

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K   +KE+E +K K KK+ +  K   K++K    
Sbjct: 398 KRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K+  ++  + +K+K+K K KK+ +  K   K+++
Sbjct: 394 KVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427

Length = 434

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)

Query: 2   KLKRRKERENKKKKKK---KKKKKKKKKKKKKKKKKR 35
           K K   E++  K  KK   K+ +KK+K+K+K K KKR
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKR 415

Length = 434

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 2/34 (5%)

Query: 4   KRRKERE--NKKKKKKKKKKKKKKKKKKKKKKKR 35
           K+RK+ E   KK+ K++KKK+KKKKKKK KK  +
Sbjct: 75  KKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNK 108

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.8 bits (96), Expect = 7e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
            K + +K ++ +K  KK+ K++KKK+KKKKKKK 
Sbjct: 70  QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKA 103

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 40.7 bits (96), Expect = 7e-05
 Identities = 13/32 (40%), Positives = 25/32 (78%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
           + +R KER  K+K+ +K ++KK K+++K+K+K
Sbjct: 99  RRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           KE+  +KK+KKKKKKKKKKK  KK  KK+
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKAAKKK 134

Length = 135

>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein complex aNOP56 subunit; Provisional

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 16/32 (50%), Positives = 25/32 (78%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K +  +  KKK+++KK +K+KKKKK+KKK K+
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKK 407

Length = 414

>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           K   +  ++   K+ +KK+K+K+K K KK+ +  
Sbjct: 386 KKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419

Length = 434

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
           K  E K KKKK +  K++KKKKK+KKKK+ 
Sbjct: 138 KGHEKKHKKKKHEDDKERKKKKKEKKKKKK 167

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 18/37 (48%), Positives = 27/37 (72%), Gaps = 6/37 (16%)

Query: 4   KRRKERENK------KKKKKKKKKKKKKKKKKKKKKK 34
           ++R+E++ K      KK+ K++KKK+KKKKKKK KK 
Sbjct: 70  QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKG 106

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           ++ + K ++ K+KKKKKKKKKKK  KK  KKKK
Sbjct: 103 QVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 19/31 (61%), Positives = 21/31 (67%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K +KE E K+K K KKKK KKKK K K KK 
Sbjct: 73  KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKD 103

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 19/30 (63%), Positives = 24/30 (80%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
            E E KK+KKKKK+ KK+KK+KK KK+K V
Sbjct: 149 VEEEEKKEKKKKKEVKKEKKEKKDKKEKMV 178

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 17/33 (51%), Positives = 25/33 (75%)

Query: 3   LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
            K+R +R+ KK+KKKKKKK KK  KK++K+  +
Sbjct: 84  AKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 2  KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
           LK+RK  E  + K+ KK+  KK  +KKK+K 
Sbjct: 2  LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKL 33

This presumed domain is found at the N-terminus of Ribosomal L30 proteins and has been termed RL30NT or NUC018. Length = 71

>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%)

Query: 12  KKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGH 49
           KKKK K KK K K KK + KKK R  ++ F  + E+ H
Sbjct: 91  KKKKGKSKKNKLKGKKDEDKKKAREGWNNFSYFPEITH 128

JAK1 is a tyrosine kinase protein essential in signaling type I and type II cytokines. It interacts with the gamma chain of type I cytokine receptors to elicit signals from the IL-2 receptor family, the IL-4 receptor family, the gp130 receptor family, ciliary neurotrophic factor receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and Leptin-R). It also is involved in transducing a signal by type I (IFN-alpha/beta) and type II (IFN-gamma) interferons, and members of the IL-10 family via type II cytokine receptors. JAK (also called Just Another Kinase) is a family of intracellular, non-receptor tyrosine kinases that transduce cytokine-mediated signals via the JAK-STAT pathway. The JAK family in mammals consists of 4 members: JAK1, JAK2, JAK3 and TYK2. JAKs are composed of seven JAK homology (JH) domains (JH1-JH7) . The C-terminal JH1 domain is the main catalytic domain, followed by JH2, which is often referred to as a pseudokinase domain, followed by JH3-JH4 which is homologous to the SH2 domain, and lastly JH5-JH7 which is a FERM domain. Named after Janus, the two-faced Roman god of doorways, JAKs possess two near-identical phosphate-transferring domains; one which displays the kinase activity (JH1), while the other negatively regulates the kinase activity of the first (JH2). The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM domain is also found in protein tyrosine phosphatases (PTPs) , the tyrosine kinases FAK and JAK, in addition to other proteins involved in signaling. This domain is structurally similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites. Length = 198

>gnl|CDD|235410 PRK05326, PRK05326, potassium/proton antiporter; Reviewed

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 19/84 (22%), Positives = 31/84 (36%), Gaps = 4/84 (4%)

Query: 61  LASFFVVAVGGTVIGVIWGFLTGFVTRFTN-EVRVIEPIFIFVMAYLAYLTAEIFHMSGI 119
           L  F      G +IG++ G+L   +          + PI +   A L +        SG 
Sbjct: 188 LLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLIFALTAALGGSGF 247

Query: 120 LAITFCGITMKNYVEANISHKSHT 143
           LA+   G+ + N     I H+   
Sbjct: 248 LAVYLAGLVLGN---RPIRHRHSI 268

Length = 562

>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168)

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K  K+R  ++KKK+KKKKKKK KK  KK++K
Sbjct: 82  KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEK 112

This family consists of several hypothetical eukaryotic proteins of unknown function. Length = 142

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
            K + +KE++ KK KK+K  + K  KKKKKKKKK+
Sbjct: 159 KKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 39.0 bits (92), Expect = 3e-04
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
           K  K  E  +KK +K K K +KKK KK++ K  L+
Sbjct: 66  KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLF 100

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 38.4 bits (90), Expect = 4e-04
 Identities = 11/35 (31%), Positives = 27/35 (77%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           + L+ R+ER  ++ +K+K+ +K ++KK K+++K++
Sbjct: 94  IALRLRRERTKERAEKEKRTRKNREKKFKRRQKEK 128

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 18/32 (56%), Positives = 24/32 (75%)

Query: 3   LKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           +K+  + + K+KK+KKKKKKKKKKK  KK  K
Sbjct: 101 VKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAK 132

Length = 135

>gnl|CDD|225802 COG3263, COG3263, NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 6/111 (5%)

Query: 57  LLSGLASFFVVAVG-GTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAYLTAEIFH 115
           L  G    F+   G G ++G+  G L   +    N    + PI       L +       
Sbjct: 182 LSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIFSLTGAIG 241

Query: 116 MSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGI 166
            SGILA+   G+     +  N   ++   +      L+  ++ ++F+ LG+
Sbjct: 242 GSGILAVYLAGL-----LLGNRPIRARHGILRFFDGLAWLAQILMFLVLGL 287

Length = 574

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 39.7 bits (93), Expect = 4e-04
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
           K  +R+ER  KKK+ K K  K+  KKKKKK     
Sbjct: 76  KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAA 110

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K+ ++  +E  K+KK+KKKKKKKKKKK  KK  
Sbjct: 99  KIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAA 131

Length = 135

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           ++  +RE + KKKK+ K K  K+  KKKKKK
Sbjct: 75  EKELQREERLKKKKRVKTKAYKEPTKKKKKK 105

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional

 Score = 39.5 bits (93), Expect = 6e-04
 Identities = 14/35 (40%), Positives = 25/35 (71%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           +  K  K+RE +KK+KKKK    KKK+++++++K 
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449

Length = 482

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
            + K+R   EN KK+K  KK KKKKK KKK +  
Sbjct: 175 ERQKKR--EENLKKRKDDKKNKKKKKAKKKGRIL 206

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 37.6 bits (87), Expect = 7e-04
 Identities = 16/26 (61%), Positives = 16/26 (61%)

Query: 8   ERENKKKKKKKKKKKKKKKKKKKKKK 33
           E   K KKKKKK KK KK KK  KK 
Sbjct: 95  EPTEKPKKKKKKSKKTKKPKKSSKKD 120

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 9/43 (20%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKK---------KKKKKKKKR 35
           + + +KE++ KK+ KK+KK+KK KK         KKKKKKKK+
Sbjct: 150 EEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 18/31 (58%), Positives = 24/31 (77%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKK 31
           +K K +++++ KKKKKKKKKK  KK  KKKK
Sbjct: 105 LKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135

Length = 135

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 11/35 (31%), Positives = 28/35 (80%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           ++L+R + +E  +K+K+ +K ++KK K+++K+K++
Sbjct: 96  LRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 18/33 (54%), Positives = 21/33 (63%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K+K+  E + K K KKKK KKKK K K KK  K
Sbjct: 73  KVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDK 105

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
           K + +++  KKKK K K KK  KK  K +KK  
Sbjct: 83  KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
             K  KE E ++++KK+KKKKK+ KK+KK+KK +
Sbjct: 140 TAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDK 173

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 18/33 (54%), Positives = 27/33 (81%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K+++  E E ++KK+KKKKK+ KK+KK+KK KK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKK 174

5. This is a family of proteins conserved from yeasts to human. Subunit A34.5 of RNA polymerase I is a non-essential subunit which is thought to help Pol I overcome topological constraints imposed on ribosomal DNA during the process of transcription. Length = 193

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 2  KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
          K  +  E+  KK +K K K +KKK KK++ K +
Sbjct: 66 KELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 37.1 bits (87), Expect = 0.001
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 2  KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
          K + +   + +KK +K K K +KKK KK++ K R+
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
           K +R+K+RE   KK+K  KK KKKKK KKK +
Sbjct: 173 KAERQKKREENLKKRKDDKKNKKKKKAKKKGR 204

The surfeit locus protein SURF-6 is shown to be a component of the nucleolar matrix and has a strong binding capacity for nucleic acids. Length = 206

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 15/33 (45%), Positives = 26/33 (78%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K K  KE +N+  K+++K+K++ K++KKKKK+K
Sbjct: 91  KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEK 123

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3 subunit

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 10/43 (23%), Positives = 15/43 (34%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTE 46
           K + E+  K  KKKK K K K                 + + +
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDDYDGYDDDFYD 236

This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein eIF3j (HCR1) has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p. Length = 242

>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19

 Score = 37.1 bits (86), Expect = 0.002
 Identities = 15/28 (53%), Positives = 23/28 (82%)

Query: 2   KLKRRKERENKKKKKKKKKKKKKKKKKK 29
           K  ++K+ E+ K++KKKKK+KKKKKK+ 
Sbjct: 142 KKHKKKKHEDDKERKKKKKEKKKKKKRH 169

Med19 represents a family of conserved proteins which are members of the multi-protein co-activator Mediator complex. Mediator is required for activation of RNA polymerase II transcription by DNA binding transactivators. Length = 178

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 36.7 bits (86), Expect = 0.002
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 1  MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
          ++     ++E K  +K +KK +K K K +KKK K
Sbjct: 58 LEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 15/22 (68%), Positives = 15/22 (68%)

Query: 13  KKKKKKKKKKKKKKKKKKKKKK 34
           K KKKKKK KK KK KK  KK 
Sbjct: 99  KPKKKKKKSKKTKKPKKSSKKD 120

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 16/25 (64%), Positives = 17/25 (68%)

Query: 10  ENKKKKKKKKKKKKKKKKKKKKKKK 34
           E  +K KKKKKK KK KK KK  KK
Sbjct: 95  EPTEKPKKKKKKSKKTKKPKKSSKK 119

This contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis. Also present are peptides from a related tick species, Ixodes ricinus. They are characterized by a putative signal peptide indicative of secretion and conserved cysteine residues. Length = 120

>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2 complex component)

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
            + KR+ + E KKKK K+ K  K  KK   K  K+
Sbjct: 248 AEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282

RNases H are enzymes that specifically hydrolyse RNA when annealed to a complementary DNA and are present in all living organisms. In yeast RNase H2 is composed of a complex of three proteins (Rnh2Ap, Ydr279p and Ylr154p), this family represents the homologues of Ydr279p. It is not known whether non yeast proteins in this family fulfil the same function. Length = 287

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 14/27 (51%), Positives = 23/27 (85%)

Query: 8   ERENKKKKKKKKKKKKKKKKKKKKKKK 34
           E+++KK KKK+KK+K+K++ K KKK+ 
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEV 222

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 38.1 bits (88), Expect = 0.002
 Identities = 18/65 (27%), Positives = 37/65 (56%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLAS 63
           +  + +++ K KKKK++K+K++KKKKKK      +H      +   N  +  + L  ++S
Sbjct: 270 EAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQPVQNGAVEEEPLPPMSS 329

Query: 64  FFVVA 68
           + ++A
Sbjct: 330 YKLLA 334

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 6  RKERENKKKKKKKKKKKKKKKKKKKKKKK 34
          + E +  KKKKKKKKKK +      K KK
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKK 45

This is a region found N terminal to the catalytic domain of glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes but not in Escherichia coli. This region is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function. Length = 83

>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional

 Score = 37.9 bits (89), Expect = 0.002
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 1  MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLY 38
          +K     ++E K   K +KKK+K++ K  K K K  L+
Sbjct: 56 LKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPRLF 93

Length = 330

>gnl|CDD|224094 COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 7/74 (9%)

Query: 55  VDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIE-----PIFIFVMAYLAYL 109
           + LL GL +  +  V GT++G++ G+  G+V R    +R+ +     P  +  +  +A L
Sbjct: 87  ISLLIGLLAVLISLVIGTLLGLLAGYFGGWVDRVL--MRITDIFLAFPSLLLAILLVAIL 144

Query: 110 TAEIFHMSGILAIT 123
              + ++   LA+ 
Sbjct: 145 GPGLLNLILALALV 158

Length = 289

>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKKKKKRV 36
            E+E +++++ KKKK+ K K  K+  KK+ 
Sbjct: 74  GEKELQREERLKKKKRVKTKAYKEPTKKKK 103

The proteins in this family are designated YL1. These proteins have been shown to be DNA-binding and may be a transcription factor. Length = 238

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 37.4 bits (86), Expect = 0.003
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 10  ENKKKKKKKKKKKKKKKKKKKKKKKRV 36
           E K KK KKK+KK+K+K++ K KKK V
Sbjct: 196 EKKSKKPKKKEKKEKEKERDKDKKKEV 222

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 37.2 bits (87), Expect = 0.003
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           ++ K+RE   +K+K  ++++K K K  +KK++
Sbjct: 117 QQAKKREAAGEKEKAPRRERKPKPKAPRKKRK 148

Length = 213

>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 4   KRRKERENKKKKKKKKKKKKKKKKKKKKKKK 34
           K+R+    K+K  ++++K K K  +KK+K +
Sbjct: 120 KKREAAGEKEKAPRRERKPKPKAPRKKRKPR 150

Length = 213

>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 2/43 (4%)

Query: 1  MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVLYHMFEA 43
          + LKR K +E K+K + + ++++ K +K+K K +     + EA
Sbjct: 32 LALKREKAQEKKRKAEAQAERRELKARKEKLKTRS--DWLKEA 72

NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway. Length = 188

>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in Williams-Beuren syndrome

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%)

Query: 3  LKRRKERENKKKKKKKKKKKKKKKKKKK----KKKKR 35
          +   K R   ++ ++KKKKKKK KKK K    +KK++
Sbjct: 27 IDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQ 63

This domain family is found in eukaryotes, and is typically between 72 and 83 amino acids in length. The family is found in association with pfam08241. This family is made up of S-adenosylmethionine-dependent methyltransferases. The proteins are deleted in Williams-Beuren syndrome (WBS), a complex developmental disorder with multisystemic manifestations including supravalvular aortic stenosis (SVAS) and a specific cognitive phenotype. Length = 85

>gnl|CDD|217502 pfam03343, SART-1, SART-1 family

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 14/25 (56%), Positives = 16/25 (64%)

Query: 7   KERENKKKKKKKKKKKKKKKKKKKK 31
              E  K KK KKKKKKKKK++K  
Sbjct: 268 DVSEMVKFKKPKKKKKKKKKRRKDL 292

SART-1 is a protein involved in cell cycle arrest and pre-mRNA splicing. It has been shown to be a component of U4/U6 x U5 tri-snRNP complex in human, Schizosaccharomyces pombe and Saccharomyces cerevisiae. SART-1 is a known tumour antigen in a range of cancers recognised by T cells. Length = 603

>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich region

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 15/32 (46%), Positives = 21/32 (65%)

Query: 4  KRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
          K+RKE    + +K  KKKK+K  +KK K KK+
Sbjct: 12 KQRKESGKTQSQKSDKKKKEKVSEKKGKSKKK 43

This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear. Length = 151

>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011)

 Score = 35.7 bits (83), Expect = 0.004
 Identities = 10/33 (30%), Positives = 22/33 (66%)

Query: 1   MKLKRRKERENKKKKKKKKKKKKKKKKKKKKKK 33
            ++  R  RE  K++ +K+K+ +K ++KK K++
Sbjct: 92  RRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124

This is a family of fungal proteins whose function is unknown. Length = 130

>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 17/25 (68%), Positives = 21/25 (84%)

Query: 12  KKKKKKKKKKKKKKKKKKKKKKKRV 36
           K+K K+KK+KKKKKKKKKKK  K+ 
Sbjct: 106 KEKAKQKKQKKKKKKKKKKKTSKKA 130

Length = 135

>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742)

 Score = 36.2 bits (84), Expect = 0.004
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)

Query: 3   LKRRKERENK----KKKKKKKKKKKKKKKKKKKKKK 34
           L    E+  K    K+K K KKKK KKKK K K KK
Sbjct: 67  LAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKK 102

This is a family of fungal proteins of unknown function. Length = 182

>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal

 Score = 36.0 bits (84), Expect = 0.004
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 3   LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKRVL 37
           LK  ++ E K +K K K +KKK KK++ K +  VL
Sbjct: 68  LKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRLFVL 102

This domain is found to the N-terminus of bacterial signal peptidases of the S49 family (pfam01343). Length = 154

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 37.0 bits (85), Expect = 0.004
 Identities = 10/33 (30%), Positives = 26/33 (78%)

Query: 3   LKRRKERENKKKKKKKKKKKKKKKKKKKKKKKR 35
           +K  +ER ++++ +K K++KKK++K+K+ +++ 
Sbjct: 82  VKLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.96
KOG1965|consensus	575		99.96
KOG1966|consensus	670		99.95
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.9
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.89
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.89
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.82
PRK05326	562	potassium/proton antiporter; Reviewed	99.81
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	99.32
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	98.94
KOG4505|consensus	467		98.94
PRK03562	621	glutathione-regulated potassium-efflux system prot	98.39
PRK10669	558	putative cation:proton antiport protein; Provision	98.2
PLN03159	832	cation/H(+) antiporter 15; Provisional	98.14
PRK03659	601	glutathione-regulated potassium-efflux system prot	98.1
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	98.02
COG4651	408	RosB Kef-type K+ transport system, predicted NAD-b	96.29
PF06375	154	BLVR: Bovine leukaemia virus receptor (BLVR); Inte	94.92
KOG3794|consensus	453		85.56
KOG2422|consensus	665		85.25
PF15086	74	UPF0542: Uncharacterised protein family UPF0542	84.98
PF04956	99	TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conju	81.19
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	80.12

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.96  E-value=5.1e-29  Score=230.62  Aligned_cols=168  Identities=54%  Similarity=0.968  Sum_probs=148.4

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA  107 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~  107 (195)
                      -.|||+|+++|.++.++...++++.+..+..+....|+...+||+++|+++|++.++++++.++++..++.++++++|++
T Consensus       171 llNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~~~e~~l~l~~~yl~  250 (559)
T TIGR00840       171 LLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIRQIEPLFVFLISYLS  250 (559)
T ss_pred             hhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence            36999999999999998753323344445666677888888889999999999999999999766789999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q psy1930         108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFC  187 (195)
Q Consensus       108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~  187 (195)
                      |.+||.+|.||++|+++||+++++|.+.|++++++....+||+.+++++|+++|+++|+++......|+|.++++++++|
T Consensus       251 Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~~~~~~~i~~~l~~~  330 (559)
T TIGR00840       251 YLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENHEWNWAFVVATLSFC  330 (559)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999886655678888888889999


Q ss_pred             HHHhccCC
Q psy1930         188 SLYRTLGK  195 (195)
Q Consensus       188 lv~R~l~v  195 (195)
                      +++|+++|
T Consensus       331 ll~R~l~V  338 (559)
T TIGR00840       331 VIYRVLGV  338 (559)
T ss_pred             HHHHHHHH
Confidence            99999875

This model is specific for the eukaryotic members members of this family.

>KOG1965|consensus

Probab=99.96  E-value=1.9e-28  Score=223.01  Aligned_cols=165  Identities=28%  Similarity=0.453  Sum_probs=148.5

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcc--ccccHHHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTN--EVRVIEPIFIFVMAY  105 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~--~~~~~~~~l~la~a~  105 (195)
                      -.|||+|||+|+++..+...+.   +..+..+++..|+..+.|+..+|+++|++.++++|+++  ++|..|..+++.++|
T Consensus       202 vLNDAvsIVlf~~i~~~~~~~~---~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll~sY  278 (575)
T KOG1965|consen  202 VLNDAVSIVLFNTIQKFQLGSL---NDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLLMSY  278 (575)
T ss_pred             hccchhHHHHHHHHHHHccCCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            3699999999999999886443   23445579999999999999999999999999999875  578999999999999


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-hhhH-HHHHHHH
Q psy1930         106 LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVWN-TAFVILT  183 (195)
Q Consensus       106 ~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~-~~~~-~~~i~~~  183 (195)
                      .+|++||.+|.||++||++||++|+||.++|+++++|...+++|+++++++|+++|.|+|+.+++.. ..|. ..++.++
T Consensus       279 ~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~fv~~~  358 (575)
T KOG1965|consen  279 LSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQFVFGA  358 (575)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999887644 5666 4778889


Q ss_pred             HHHHHHHhccCC
Q psy1930         184 IFFCSLYRTLGK  195 (195)
Q Consensus       184 i~~~lv~R~l~v  195 (195)
                      .++++++|++.|
T Consensus       359 ~vlV~lgRa~nv  370 (575)
T KOG1965|consen  359 GVLVLLGRAANV  370 (575)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

>KOG1966|consensus

Probab=99.95  E-value=1.2e-28  Score=224.22  Aligned_cols=168  Identities=57%  Similarity=1.030  Sum_probs=159.6

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA  107 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~  107 (195)
                      -.|||+++|||++|.++.+.|++++.+.+...+..+|+.+.+||+++|+++|+++++..|+..+-+.+|+++.+.+||++
T Consensus       203 LlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~pYla  282 (670)
T KOG1966|consen  203 LLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLLPYLA  282 (670)
T ss_pred             hhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhHHHHH
Confidence            47999999999999999988877777767777889999999999999999999999999999988899999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHH
Q psy1930         108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFC  187 (195)
Q Consensus       108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~  187 (195)
                      |..||.+|.|||+|+.+||+.|.+|.+.|+++++......|..+++..+|+++|+++|++..+..++|++.++.++++.|
T Consensus       283 YL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~~h~wd~~Fi~~T~~fc  362 (670)
T KOG1966|consen  283 YLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSSNHHWDFAFICLTLVFC  362 (670)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCCcceeehhhhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999998878899999999999999


Q ss_pred             HHHhccCC
Q psy1930         188 SLYRTLGK  195 (195)
Q Consensus       188 lv~R~l~v  195 (195)
                      ++.|+++|
T Consensus       363 ~~~R~lgv  370 (670)
T KOG1966|consen  363 LIYRAIGV  370 (670)
T ss_pred             HHHHHHHh
Confidence            99999985

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.90  E-value=2.2e-23  Score=187.88  Aligned_cols=164  Identities=23%  Similarity=0.318  Sum_probs=139.2

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc----cccHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE----VRVIEPIFIFVM  103 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~----~~~~~~~l~la~  103 (195)
                      -.|||+++++|.+.+++...++ +   .+......+|++.+++|+++|+++|++..+++++.++    ++..+..++++.
T Consensus       158 l~ND~~giv~f~~~l~~~~~~~-~---~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~  233 (429)
T COG0025         158 LLNDGVGIVLFKVALAALLGTG-A---FSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLL  233 (429)
T ss_pred             HhhhHHHHHHHHHHHHHHhccC-C---CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHH
Confidence            5799999999999999886432 2   2345678999999999999999999999999999886    478999999999


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccCh-hHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch-hhHHHHHH
Q psy1930         104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISH-KSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH-VWNTAFVI  181 (195)
Q Consensus       104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~-~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~-~~~~~~i~  181 (195)
                      ++.+|.+||.+|+||++|++++|++++++...+.++ +.+...++|||.+++++|+++|+++|+++..... .+.+..++
T Consensus       234 ~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~~l  313 (429)
T COG0025         234 AFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLGLL  313 (429)
T ss_pred             HHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Confidence            999999999999999999999999998444444454 4478889999999999999999999999975443 33456666


Q ss_pred             HHHHHHHHHhccCC
Q psy1930         182 LTIFFCSLYRTLGK  195 (195)
Q Consensus       182 ~~i~~~lv~R~l~v  195 (195)
                      ++.+.++++||++|
T Consensus       314 ~~~~~~~v~R~~~V  327 (429)
T COG0025         314 VALVAVLLARPLWV  327 (429)
T ss_pred             HHHHHHHHHHHHHH
Confidence            78889999999875

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.89  E-value=1.5e-22  Score=186.56  Aligned_cols=139  Identities=23%  Similarity=0.343  Sum_probs=122.3

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA  107 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~  107 (195)
                      -.||++++++|.++..+..+++ +   .++.+.+..|++.+++|+++|+++|++..+++++..+++..+..++++++|++
T Consensus       146 llND~~alvlf~~~~~~~~~~~-~---~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~~~~~~~l~l~~~~~~  221 (525)
T TIGR00831       146 LLNDGAALVVFAIAVAVALGKG-V---FDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDDPLVEIALTILAPFAG  221 (525)
T ss_pred             hhcchHHHHHHHHHHHHHhcCC-C---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            3799999999999998875322 1   34555678899999999999999999999988665555778999999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhccccc-ccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930         108 YLTAEIFHMSGILAITFCGITMKNYVEA-NISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS  170 (195)
Q Consensus       108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~-~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~  170 (195)
                      |.+||.+|.||++|+++||++++|+.++ +.+++.+...++|||.+++++|+++|+++|+++..
T Consensus       222 y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~  285 (525)
T TIGR00831       222 FLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPG  285 (525)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998876 67888888999999999999999999999999854

This model is specific for the bacterial members of this family.

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.89  E-value=2.4e-22  Score=178.19  Aligned_cols=158  Identities=16%  Similarity=0.161  Sum_probs=137.4

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLAY  108 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~y  108 (195)
                      -||++|++|..++.++...|+.++   ++... ..|++|++.|+++|+..|++.+++.++.+-+..+.+++.++.+.++|
T Consensus       159 tNDPmAvfLTitlieli~~get~l---~~~~l-l~f~~q~glG~l~G~~gg~l~~~~Inr~nLd~GL~pil~la~~Ll~f  234 (574)
T COG3263         159 SNDPMAVFLTITLIELIAGGETNL---SWGFL-LGFLQQFGLGLLLGLGGGKLLLQLINRINLDSGLYPILALAGGLLIF  234 (574)
T ss_pred             CCCceeeehhHHHHHHHhcccccc---CHHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            499999999999999987775443   33333 44999999999999999999999999998667899999999999999


Q ss_pred             HHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc-hhhHHHHHHHHHHHH
Q psy1930         109 LTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA-HVWNTAFVILTIFFC  187 (195)
Q Consensus       109 ~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~-~~~~~~~i~~~i~~~  187 (195)
                      .+++.+|+||++||+.||+.++|.     +-+.++.+.+|.|.++|++|+.+|+++|+.++|.+ .......+++++.++
T Consensus       235 s~t~aiGGsG~LaVYl~Gll~GN~-----~i~~r~~I~~f~dG~twlaQI~MFlvLGLLvtPsql~~iavPailL~l~mi  309 (574)
T COG3263         235 SLTGAIGGSGILAVYLAGLLLGNR-----PIRARHGILRFFDGLAWLAQILMFLVLGLLVTPSQLLPIAIPAILLSLWMI  309 (574)
T ss_pred             HHHHHhcCcccHHHHHHHHHhCCC-----cchhHHHHHHHhccHHHHHHHHHHHHHHHhcCHhhhhHhhHHHHHHHHHHH
Confidence            999999999999999999999984     44566788999999999999999999999998754 344555667789999


Q ss_pred             HHHhccCC
Q psy1930         188 SLYRTLGK  195 (195)
Q Consensus       188 lv~R~l~v  195 (195)
                      +++||++|
T Consensus       310 fvaRP~aV  317 (574)
T COG3263         310 FVARPLAV  317 (574)
T ss_pred             HHHhHHHH
Confidence            99999986

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.82  E-value=1.9e-19  Score=170.55  Aligned_cols=163  Identities=13%  Similarity=0.055  Sum_probs=124.6

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccc----ccHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEV----RVIEPIFIFVM  103 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~----~~~~~~l~la~  103 (195)
                      -.|||+|+.++.+.+.+...++..-.+ .....+.++++++++|+++|+++|++..+++++.++.    +.....+.+++
T Consensus       173 GlNDGlAfpfv~LaL~ll~~~~~g~~~-~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaL  251 (810)
T TIGR00844       173 GCNDGLAFPFVFLSMDLLLYPGRGGEI-VKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLIL  251 (810)
T ss_pred             hcccHHHHHHHHHHHHHHhccCccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            369999999998887766422111001 1112468899999999999999999999999887632    12345678889


Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch------hhHH
Q psy1930         104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH------VWNT  177 (195)
Q Consensus       104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~------~~~~  177 (195)
                      ++++|.+++.+|+||+||||+||+++++...  ..++  ....+||+.++.++|.++|+++|+.+.+...      .+.|
T Consensus       252 Ali~~gla~lLggSGfLAVFVAGl~~gn~~~--~~~~--~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w  327 (810)
T TIGR00844       252 ALTCAGFGSMLGVDDLLVSFFAGTAFAWDGW--FAQK--THESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVW  327 (810)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHhcccc--hhhh--HHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHH
Confidence            9999999999999999999999999998643  1222  2346799999999999999999999864321      2457


Q ss_pred             HHHHHHHHHHHHHhccCC
Q psy1930         178 AFVILTIFFCSLYRTLGK  195 (195)
Q Consensus       178 ~~i~~~i~~~lv~R~l~v  195 (195)
                      ..++++++++++.||.+|
T Consensus       328 ~~ilLaL~LifVrRPpaV  345 (810)
T TIGR00844       328 RLIILSLVVIFLRRIPAV  345 (810)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777788999999998653

This model is specific for the fungal members of this family.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=99.81  E-value=7.4e-19  Score=163.19  Aligned_cols=158  Identities=17%  Similarity=0.186  Sum_probs=126.6

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE-VRVIEPIFIFVMAYLA  107 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~-~~~~~~~l~la~a~~~  107 (195)
                      .||++|+++|.++.++...++.+    ..+..+..++.++++|+++|+++|++..+++++.+. ++..+.++++++++++
T Consensus       160 ~nD~~ai~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~~~~~~~i~~l~~~l~~  235 (562)
T PRK05326        160 SNDPMAVFLTITLIELITGGETG----LSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALPAEGLYPILVLAGALLI  235 (562)
T ss_pred             cccHHHHHHHHHHHHHHhCCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHH
Confidence            59999999999999877544322    112346788999999999999999999999998864 3457788999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch-hhHHHHHHHHHHH
Q psy1930         108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH-VWNTAFVILTIFF  186 (195)
Q Consensus       108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~-~~~~~~i~~~i~~  186 (195)
                      |.+||.+|.||++|++++|++++|...     +.++...++|+.++++++.+.|+++|+.+++... ...+..+++++++
T Consensus       236 ~~~a~~lg~Sg~la~~iaGl~l~n~~~-----~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~l~i~~~l  310 (562)
T PRK05326        236 FALTAALGGSGFLAVYLAGLVLGNRPI-----RHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPALLLALFL  310 (562)
T ss_pred             HHHHHHHCCcHHHHHHHHHHHHhCCcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998532     2234578999999999999999999999876432 2223334445677


Q ss_pred             HHHHhccCC
Q psy1930         187 CSLYRTLGK  195 (195)
Q Consensus       187 ~lv~R~l~v  195 (195)
                      ++++||++|
T Consensus       311 ~~vaR~l~v  319 (562)
T PRK05326        311 ILVARPLAV  319 (562)
T ss_pred             HHHHHHHHH
Confidence            889999864

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=99.32  E-value=2.4e-13  Score=119.73  Aligned_cols=158  Identities=20%  Similarity=0.252  Sum_probs=10.0

Q ss_pred             hhccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Q psy1930          28 KKKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVRVIEPIFIFVMAYLA  107 (195)
Q Consensus        28 ~~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~~~~~~l~la~a~~~  107 (195)
                      -.||..+++++..+.+..+.+.    ..+.......+...+..|+++|...+++..++.++.++++..+...++++++.+
T Consensus       150 ~i~d~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  225 (380)
T PF00999_consen  150 VINDIIAIILLSILISLAQASG----QSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLL  225 (380)
T ss_dssp             TTTTTTTTTTT---------------------------------------------------------------------
T ss_pred             hhhccchhhhhhhhhhhhcccc----cccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhh
Confidence            4699999999999998872211    134556778888888888999999998888888886444578899999999999


Q ss_pred             HHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccch---hhHHHHHHHHH
Q psy1930         108 YLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAH---VWNTAFVILTI  184 (195)
Q Consensus       108 y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~---~~~~~~i~~~i  184 (195)
                      |.++|.+|.||+++++++|+.+++...   .++.++..+++|+   .+++.+.|+++|+.++....   ...+...+..+
T Consensus       226 ~~~a~~~g~s~~l~af~~Gl~~~~~~~---~~~~~~~l~~~~~---~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~  299 (380)
T PF00999_consen  226 YGLAEILGLSGILGAFIAGLILSNSPF---AERLEEKLESFWY---GFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLL  299 (380)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccceeeeeehccccccc---cchhhhcccchhh---HHHhhHHhhhhcccccccccccchhhhhhHHHHH
Confidence            999999999999999999999995432   3445555777776   88999999999999975433   23344444456


Q ss_pred             HHHHHHhccCC
Q psy1930         185 FFCSLYRTLGK  195 (195)
Q Consensus       185 ~~~lv~R~l~v  195 (195)
                      +.++++|++++
T Consensus       300 ~~~~~~k~~~~  310 (380)
T PF00999_consen  300 IAILLGKFIGV  310 (380)
T ss_dssp             -----------
T ss_pred             HHHHHhhhcee
Confidence            67778888764

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=98.94  E-value=1.8e-08  Score=85.41  Aligned_cols=128  Identities=11%  Similarity=0.110  Sum_probs=92.8

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc--cccHHHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE--VRVIEPIFIFVMAYL  106 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~--~~~~~~~l~la~a~~  106 (195)
                      .||..+++++.++....+.++  .   +.......+...++..+++|++.++...++.++.++  ++..+...++.+++.
T Consensus       143 ~~D~~~i~~l~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  217 (273)
T TIGR00932       143 FQDIAVVPLLALLPLLATSAS--T---EHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRPSELFTAGSLLLMFG  217 (273)
T ss_pred             HHHHHHHHHHHHHHHHhcCCC--c---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            799999999999887764321  1   111223344455556667778888888888877643  234667888999999


Q ss_pred             HHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q psy1930         107 AYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGIST  168 (195)
Q Consensus       107 ~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v  168 (195)
                      .+.++|.+|.|++++++++|+.+++...   .    +...+..+.+..+..-+-|+.+|+++
T Consensus       218 ~~~la~~~g~s~~lgaf~aGl~~~~~~~---~----~~l~~~l~~~~~~f~plFF~~~G~~~  272 (273)
T TIGR00932       218 SAYFADLLGLSMALGAFLAGVVLSESEY---R----HKLESDLEPIGGVLLPLFFISVGMSV  272 (273)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHcCCch---H----HHHHHHHHhHHHHHHHHHHHHhCccC
Confidence            9999999999999999999999997421   1    22444455555778888899999875

>KOG4505|consensus

Probab=98.94  E-value=9.7e-09  Score=89.55  Aligned_cols=160  Identities=15%  Similarity=0.119  Sum_probs=117.8

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccccc----cHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNEVR----VIEPIFIFVMA  104 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~~~----~~~~~l~la~a  104 (195)
                      -||++|+-++-..+.+...+.+ -...-. -.....+++...|+++|.++|++....+|+.+..+    ....+..++++
T Consensus       175 cNDGMaipflflai~Ll~h~~~-r~~~rd-wv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~  252 (467)
T KOG4505|consen  175 CNDGMAIPFLFLAIDLLRHKPR-RKAGRD-WVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLA  252 (467)
T ss_pred             CCCCcchhHHHHHHHHHhcCch-hccCCc-eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            5999999998888887654432 111111 14567888999999999999999999998765332    23456678888


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccchhhH------HH
Q psy1930         105 YLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDAHVWN------TA  178 (195)
Q Consensus       105 ~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~~~~~------~~  178 (195)
                      +.|-.+.+.+|++-.+-.+++|++++.-+.  ++.++++  .+.-+.+..+++..-|++.|..++..+.+|+      |.
T Consensus       253 lfc~gigtiiGvddLl~sFfAGi~Fswd~w--Fsk~t~~--s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwr  328 (467)
T KOG4505|consen  253 LFCMGIGTIIGVDDLLVSFFAGIVFSWDEW--FSKKTKE--SRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWR  328 (467)
T ss_pred             HHHhhhhheechhHHHHHHHhhhhcchhHH--hhhhhhh--ccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHH
Confidence            899999999999999999999999986442  4454433  4566777888999999999998865543333      55


Q ss_pred             HHHHHHHHHHHHhccC
Q psy1930         179 FVILTIFFCSLYRTLG  194 (195)
Q Consensus       179 ~i~~~i~~~lv~R~l~  194 (195)
                      .+++++...++=|+-.
T Consensus       329 lvilsi~iif~RRip~  344 (467)
T KOG4505|consen  329 LVILSITIIFIRRIPA  344 (467)
T ss_pred             HHHHHHHHHHhcccce
Confidence            6767777666666543

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=98.39  E-value=9.4e-06  Score=76.83  Aligned_cols=106  Identities=13%  Similarity=0.107  Sum_probs=68.1

Q ss_pred             HHHHHHhhcccc--ccHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhH
Q psy1930          81 LTGFVTRFTNEV--RVIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSET  158 (195)
Q Consensus        81 l~~~llk~~~~~--~~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~  158 (195)
                      +..+++++..+.  +......++.+++++..++|.+|.|..+++|++|+++++..   ..++.++.+..|-    .++-.
T Consensus       203 l~~~l~~~~~~~~~~e~~~~~~l~lv~~~a~la~~~Gls~~lGAFlAGl~l~~~~---~~~~le~~i~pf~----~lll~  275 (621)
T PRK03562        203 VTRPALRFVARSGLREVFTAVALFLVFGFGLLMEEVGLSMALGAFLAGVLLASSE---YRHALESDIEPFK----GLLLG  275 (621)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCc---cHHHHHHHHHHHH----HHHHH
Confidence            444555555322  33456667778888889999999999999999999999732   2344444444543    45668


Q ss_pred             HHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhcc
Q psy1930         159 IIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTL  193 (195)
Q Consensus       159 ~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l  193 (195)
                      +-|+.+|+.++......++..++..++..++.+++
T Consensus       276 lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~  310 (621)
T PRK03562        276 LFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIA  310 (621)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999986533222333333333345555554

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=98.20  E-value=4.4e-05  Score=71.24  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHhhcccccc--HHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHH
Q psy1930          74 IGVIWGFLTGFVTRFTNEVRV--IEPIFIFVMAYL-AYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMK  150 (195)
Q Consensus        74 iG~~~G~l~~~llk~~~~~~~--~~~~l~la~a~~-~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~  150 (195)
                      ++++..++..+++++..+...  ......++++++ ++..+|.+|.|.+++.+++|+++++..   ..++..+....+  
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~~e~~~l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~~---~~~~~~~~~~~~--  277 (558)
T PRK10669        203 MMLVGRRLVPWILARSAATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESE---LSHRAAHDTLPL--  277 (558)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCCh---hHHHHHHHHhhH--
Confidence            344444555566665543222  223333444443 445679999999999999999998631   223222222222  


Q ss_pred             HHHHHHhHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhccC
Q psy1930         151 MLSSSSETIIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTLG  194 (195)
Q Consensus       151 ~l~~l~~~~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l~  194 (195)
                        ..++-.+-|+.+|++++.....-++..+...+++.+++|+++
T Consensus       278 --~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~  319 (558)
T PRK10669        278 --RDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLA  319 (558)
T ss_pred             --HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              345677899999999875432212333333444556666554

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=98.14  E-value=6.4e-05  Score=73.47  Aligned_cols=130  Identities=12%  Similarity=0.051  Sum_probs=78.2

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhccc-cc--cHHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIWGFLTGFVTRFTNE-VR--VIEPIFIFVMAY  105 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~G~l~~~llk~~~~-~~--~~~~~l~la~a~  105 (195)
                      .||-.+++++.++..+...+...      ...+..++..++..+++.+++-.+..|+.++..+ .+  .....++++..+
T Consensus       209 v~Dl~~~ilLav~~~l~~~~~~~------~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl  282 (832)
T PLN03159        209 VNDMCAWILLALAIALAENDSTS------LASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVM  282 (832)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHH
Confidence            57888888888776665433211      1111222222222233333444555666666542 22  244556677778


Q ss_pred             HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcc
Q psy1930         106 LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTIS  170 (195)
Q Consensus       106 ~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~  170 (195)
                      ++.+++|.+|.|.+++.|++|+++.+ .+  ..++.   .+.+-.....++--+-|+.+|+.++.
T Consensus       283 ~~a~lae~~Gl~~ilGAFlaGl~lp~-~~--~~~~l---~ekle~~~~~lflPlFFv~vGl~idl  341 (832)
T PLN03159        283 ISGFITDAIGTHSVFGAFVFGLVIPN-GP--LGVTL---IEKLEDFVSGLLLPLFFAISGLKTNV  341 (832)
T ss_pred             HHHHHHHHhCccHHHHHHHHhhccCC-cc--hHHHH---HHHHHHHHHHHHHHHHHHHhhheeeH
Confidence            88889999999999999999999985 11  22222   23333333456778889999998864

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=98.10  E-value=9.4e-05  Score=69.83  Aligned_cols=106  Identities=11%  Similarity=0.121  Sum_probs=67.3

Q ss_pred             HHHHHHhhccccc--cHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhH
Q psy1930          81 LTGFVTRFTNEVR--VIEPIFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSET  158 (195)
Q Consensus        81 l~~~llk~~~~~~--~~~~~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~  158 (195)
                      +...++++..+.+  ......++.+++++-.++|.+|.|..+++|++|+++++..   ..++.+..++.|.    .++-.
T Consensus       200 ~~~~~~~~~~~~~~~e~~~~~~l~~vl~~a~l~~~~Gls~~LGAFlaGl~l~~s~---~~~~l~~~i~pf~----~lll~  272 (601)
T PRK03659        200 LLRPLFRFIAASGVREVFTAAALLLVLGSALFMDALGLSMALGTFIAGVLLAESE---YRHELEIAIEPFK----GLLLG  272 (601)
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhcCCc---hHHHHHHHHHHHH----HHHHH
Confidence            3445555543222  3444555666666677889999999999999999999732   3455445566664    45668


Q ss_pred             HHHHHHhhhhcccchhhHHHHHHHHHHHHHHHhcc
Q psy1930         159 IIFMFLGISTISDAHVWNTAFVILTIFFCSLYRTL  193 (195)
Q Consensus       159 ~iFvllG~~v~~~~~~~~~~~i~~~i~~~lv~R~l  193 (195)
                      +.|+.+|+.++.....-+|..++..+++.+++|++
T Consensus       273 lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~  307 (601)
T PRK03659        273 LFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGL  307 (601)
T ss_pred             HHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            99999999986533222333333334445556554

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=98.02  E-value=0.0002  Score=64.46  Aligned_cols=132  Identities=14%  Similarity=0.143  Sum_probs=84.9

Q ss_pred             hccchhhHHHHHHHHHHhhcCcchhhhhHHHHHHHHHHHhhcchhHHHHH-H-HHHHHHHhhccc--cccHHHHHHHHHH
Q psy1930          29 KKKKKKRVLYHMFEAYTEMGHNNVLYVDLLSGLASFFVVAVGGTVIGVIW-G-FLTGFVTRFTNE--VRVIEPIFIFVMA  104 (195)
Q Consensus        29 ~ND~~AIVLF~~~~~~~~~g~~~~~~~s~~~~~~~f~~~~~gGiliG~~~-G-~l~~~llk~~~~--~~~~~~~l~la~a  104 (195)
                      .+|-.++.+......+...++.+.  ..    ...+...+ +...+.... | ++..+++|+..+  .+......++++.
T Consensus       159 ~~Di~~i~lLai~~~l~~~g~~~~--~~----~~~~~~~~-~~f~~~~l~~g~~l~~~~~r~~~~~~~~e~~~~~~l~i~  231 (397)
T COG0475         159 FDDIAAILLLAIVPALAGGGSGSV--GF----ILGLLLAI-LAFLALLLLLGRYLLPPLFRRVAKTESSELFILFVLLLV  231 (397)
T ss_pred             HHHHHHHHHHHHHHHHccCCCccH--hH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            467777777777777765443221  11    12222211 122222222 4 666667777653  3456777888888


Q ss_pred             HHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHHHHhHHHHHHHhhhhcccc
Q psy1930         105 YLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSSSSETIIFMFLGISTISDA  172 (195)
Q Consensus       105 ~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~l~~~~iFvllG~~v~~~~  172 (195)
                      +.+=+++|.+|.|-++..+.+|+.++....+  .++.++.++.+-+   .+.--+-|+.+|+.++...
T Consensus       232 l~~a~l~e~~gls~ilGAFlaGl~ls~~~~~--~~~l~~~i~~~~~---~~fiplFFi~vG~~~dl~~  294 (397)
T COG0475         232 LGAAYLAELLGLSMILGAFLAGLLLSESEYR--KHELEEKIEPFGD---GLFIPLFFISVGMSLDLGV  294 (397)
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHhcccccc--hHHHHHHHHhHHh---HHHHHHHHHHhhHHcCHHH
Confidence            8899999999999999999999999975432  1344444555442   1678889999999997643

>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.29  E-value=0.077  Score=46.51  Aligned_cols=94  Identities=16%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHH-HHHHhhcccccc--HHHHHHHHHHH-HHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHH
Q psy1930          72 TVIGVIWGFLT-GFVTRFTNEVRV--IEPIFIFVMAY-LAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKY  147 (195)
Q Consensus        72 iliG~~~G~l~-~~llk~~~~~~~--~~~~l~la~a~-~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~  147 (195)
                      +.+++++|.-. -|.+.+.....+  +-....++++. ++|..+|.+|+|=-+..+++|++++..+   .|++..+....
T Consensus       200 ~alml~VgrrviPw~le~~a~tGsrElf~L~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~ese---lshraa~~slp  276 (408)
T COG4651         200 IAIMLVVGRRLIPWILERVAATGSRELFTLAVLAIALGVAFGAAELFGVSFALGAFFAGMVLAESE---LSHRAAEDSLP  276 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHhhccceeeccchhHHHHHHHHHhcchh---hhHHHHHhccC
Confidence            55666777444 455555543222  22333444444 3566778999999999999999998653   45554444333


Q ss_pred             HHHHHHHHHhHHHHHHHhhhhcccc
Q psy1930         148 AMKMLSSSSETIIFMFLGISTISDA  172 (195)
Q Consensus       148 fw~~l~~l~~~~iFvllG~~v~~~~  172 (195)
                      .-|    ..-.+-|+-+|+..+|..
T Consensus       277 Lrd----aFaVlFFvsVGmlf~P~~  297 (408)
T COG4651         277 LRD----AFAVLFFVSVGMLFDPMI  297 (408)
T ss_pred             HHH----HHHHHHHHHhhhhcCcHH
Confidence            332    334567889999887643

>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected

Probab=94.92  E-value=0.0071  Score=47.69  Aligned_cols=17  Identities=82%  Similarity=0.919  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHH
Q psy1930          10 ENKKKKKKKKKKKKKKK   26 (195)
Q Consensus        10 ~~~~~~~~~~~~~~~~~   26 (195)
                      .+||+||+|||||+++|
T Consensus        84 ~kKK~KKkkKkkKk~~k  100 (154)
T PF06375_consen   84 KKKKKKKKKKKKKKSKK  100 (154)
T ss_dssp             -----------------
T ss_pred             hhhhccchhcccccCCC
Confidence            33344444444455544

It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.

>KOG3794|consensus

Probab=85.56  E-value=0.53  Score=42.26  Aligned_cols=6  Identities=33%  Similarity=0.374  Sum_probs=2.6

Q ss_pred             Hhhccc
Q psy1930          27 KKKKKK   32 (195)
Q Consensus        27 ~~~ND~   32 (195)
                      +..|++
T Consensus       255 ~~s~e~  260 (453)
T KOG3794|consen  255 SKSKEG  260 (453)
T ss_pred             hhcccc
Confidence            344444

>KOG2422|consensus

Probab=85.25  E-value=0.16  Score=47.80  Aligned_cols=6  Identities=33%  Similarity=0.850  Sum_probs=2.4

Q ss_pred             hhhhHH
Q psy1930         115 HMSGIL  120 (195)
Q Consensus       115 ~~SGiL  120 (195)
                      |+.++|
T Consensus       283 HvdsLL  288 (665)
T KOG2422|consen  283 HVDSLL  288 (665)
T ss_pred             chhHHH
Confidence            334443

>PF15086 UPF0542: Uncharacterised protein family UPF0542

Probab=84.98  E-value=1.2  Score=30.61  Aligned_cols=7  Identities=86%  Similarity=1.061  Sum_probs=2.6

Q ss_pred             HHHHHHH
Q psy1930           8 ERENKKK   14 (195)
Q Consensus         8 ~~~~~~~   14 (195)
                      |+++|+|
T Consensus        52 ere~K~k   58 (74)
T PF15086_consen   52 EREKKKK   58 (74)
T ss_pred             HHHHHHH
Confidence            3333333

>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria

Probab=81.19  E-value=16  Score=25.86  Aligned_cols=36  Identities=8%  Similarity=-0.085  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHhhcc
Q psy1930          55 VDLLSGLASFFVV-AVGGTVIGVIWGFLTGFVTRFTN   90 (195)
Q Consensus        55 ~s~~~~~~~f~~~-~~gGiliG~~~G~l~~~llk~~~   90 (195)
                      .+....+.+.+.. +...+.+..++.....+++.+.+
T Consensus        39 ~~~l~~i~~~l~gp~~~~i~~i~ii~~g~~~~~g~~~   75 (99)
T PF04956_consen   39 TSFLCKIIDWLTGPIGKAIAIIAIIVAGIMMMFGRQS   75 (99)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence            3455555666655 44444444444444444444433

The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=80.12  E-value=13  Score=36.80  Aligned_cols=42  Identities=10%  Similarity=0.180  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccCh
Q psy1930          98 IFIFVMAYLAYLTAEIFHMSGILAITFCGITMKNYVEANISH  139 (195)
Q Consensus        98 ~l~la~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~  139 (195)
                      .+++..++++.+++|.+..|..+..+++|++++.+....+.+
T Consensus        20 ~~lll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP   61 (810)
T TIGR00844        20 IFSSIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNP   61 (810)
T ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCCh
Confidence            345566666777777777777777778888777654433333

This model is specific for the fungal members of this family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
2k3c_A	33	TMIX peptide; membrane peptide, dodecylphosphochol	98.44
2htg_A	28	NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute;	89.91
1zcd_A	388	Na(+)/H(+) antiporter 1; membrane protein; 3.45A {	86.65

>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}

Probab=98.44  E-value=8e-10  Score=64.29  Aligned_cols=31  Identities=45%  Similarity=0.866  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhhhhhhHHHHHHHHHhhhccc
Q psy1930         103 MAYLAYLTAEIFHMSGILAITFCGITMKNYV  133 (195)
Q Consensus       103 ~a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~  133 (195)
                      .||++|.+||.+|.||++|+++||+++++|.
T Consensus         2 ~~y~~Yl~AE~~~lSGIlavv~~Gi~~~~y~   32 (33)
T 2k3c_A            2 KSYMAYLSAELFHLSGIMALIASGVVMRPKK   32 (33)
T ss_dssp             CCSTTTGGGSSSTTTTTTTTTTTTSCCCCCC
T ss_pred             hhHHHHHHHHHhCcChHHHHHHHHHHHhhcc
Confidence            4789999999999999999999999999874

>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}

Probab=89.91  E-value=0.04  Score=30.27  Aligned_cols=13  Identities=23%  Similarity=0.194  Sum_probs=11.0

Q ss_pred             hhccchhhHHHHH
Q psy1930          28 KKKKKKKRVLYHM   40 (195)
Q Consensus        28 ~~ND~~AIVLF~~   40 (195)
                      -.||++|+|+|.+
T Consensus        15 llNDavaiVlf~~   27 (28)
T 2htg_A           15 LLNDAVTVVLYKK   27 (28)
T ss_dssp             TTTTTTTTTTTTC
T ss_pred             eecccEEEEEEec
Confidence            3699999999964

>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A

Probab=86.65  E-value=3.6  Score=35.94  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=42.9

Q ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHhhhcccccccChhHHHHHHHHHHHHHH--HHhHHHHHHHhhhhcc
Q psy1930         104 AYLAYLTAEIFHMSGILAITFCGITMKNYVEANISHKSHTTVKYAMKMLSS--SSETIIFMFLGISTIS  170 (195)
Q Consensus       104 a~~~y~lae~l~~SGiLAvvv~Gl~l~~~~~~~~~~~~~~~~~~fw~~l~~--l~~~~iFvllG~~v~~  170 (195)
                      ...+++..|..|....++.|.+|+++....+++.++  .++.++-.+-...  ++=.+.|+..|+.+..
T Consensus       212 gl~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~--~~~le~~l~p~v~~~ilPlFaFanaGv~l~~  278 (388)
T 1zcd_A          212 GVVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSP--AKRLEHVLHPWVAYLILPLFAFANAGVSLQG  278 (388)
T ss_dssp             HHHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCH--HHHHHHHHHHHHHHTHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCH--HHHHHHHHHHHHHHHHHHHHHHHhcCeeecc
Confidence            335677778999999999999999998753321222  2334444444442  3555557889998854

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00