Psyllid ID: psy1968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MDKLASHLLGKVPSSGNLMDSFHLDDSDLDSDDENDRRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccEEcccccccccccccccccccccccccccHHHHHHHHHcccEEEEcccccccccEEcccHHHHHcccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHccccccccccccccEcccccccccccccccccccccccccEEEEccccHHHHHHHcccccEEEEEccccccccccHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccEEEEEEcccccccccHHccHHHHHHHHHHHcccccccccccccccccccHHHHHHccccHHHHHHHHHHHHEEEcc
Coil and Loop (DISEMBL)
mdklashllgkvpssgnlmdsfhlddsdldsddendrrppivqpivpikyetldRDKVLNAYRTTLGrlglvwtppgglspksvcavpaasdypetylrntdkeKLLIWYCENFRrqyssryplrrpLVMALENECGVQKMVCTsinvtrfplvefkswsgcasfvsdhivyepldhptnlpvrlrspstvfngqsghcfeLSTLLVSLLLVRVE
Flexible Loop (DISEMBL)
mdklashllgkvpssgnlmdSFHLDDSDLDsddendrrppivqpivpikyetldrDKVLNAYRTTLGrlglvwtppgglsPKSVCAVPAASDypetylrntdkekLLIWYCENFRRqyssryplrRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Low Complexity Region (SEG)
MDKLASHLLGKVPSSGNlmdsfhlddsdldsddendRRppivqpivpiKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFElstllvslllvRVE
Disordered region (IsUnstruct)
****************************************IVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVR**
Disordered Region (DISOPRED)
*********GKVPSSGNL****************************************LNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Disordered Region (DISEMBL)
MDKLASHLLGKVPSSGNLMDSFHLDDS********DRRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Disordered Region (DISPRO)
**********KVP*********************NDRRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKLASHLLGKVPSSGNLMDSFHLDDSDLDSDDENDRRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVRVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q4V516	897	Coiled-coil domain-contai	yes	N/A	0.553	0.132	0.491	8e-25
Q0V9S9	856	Coiled-coil domain-contai	yes	N/A	0.539	0.135	0.448	2e-23
Q95JL1	874	Coiled-coil domain-contai	N/A	N/A	0.8	0.196	0.36	9e-20
Q8IY82	874	Coiled-coil domain-contai	yes	N/A	0.562	0.138	0.438	1e-18
Q6V3W6	876	Coiled-coil domain-contai	yes	N/A	0.548	0.134	0.432	2e-18
A8JAM0	1159	Coiled-coil domain-contai	N/A	N/A	0.581	0.107	0.344	2e-18
G2HE57	874	Coiled-coil domain-contai	no	N/A	0.562	0.138	0.429	1e-17
Q2T9M4	872	Coiled-coil domain-contai	yes	N/A	0.567	0.139	0.434	7e-15

>sp|Q4V516|CC135_DROME Coiled-coil domain-containing protein lobo OS=Drosophila melanogaster GN=lobo PE=1 SV=1

 Score =  113 bits (283), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/120 (49%), Positives = 77/120 (64%), Gaps = 1/120 (0%)

Query: 93  YPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP 152
           YP +Y   + KE+LL+ Y ENFR+Q    YP RR +V+AL NEC VQK VCT+I  T F 
Sbjct: 93  YPPSYYTLSPKERLLLLYAENFRKQLVLSYPKRRAMVLALPNECKVQKFVCTTIRPTAFI 152

Query: 153 LVEF-KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
             +   S    A FV+D I YEPL  P NLP RL SP T+   + G+ +E++TLLVS+L+
Sbjct: 153 YTQLISSVEEIAKFVADFIQYEPLQDPINLPNRLISPETLLRKRKGNSYEMATLLVSMLI 212

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis. Involved in sperm motility. Required for the sperm to enter in the coiled storage seminal receptacle (SR) tubule.
Drosophila melanogaster (taxid: 7227)

>sp|Q0V9S9|CC135_XENTR Coiled-coil domain-containing protein lobo homolog OS=Xenopus tropicalis GN=ccdc135 PE=2 SV=1

 Score =  108 bits (270), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/116 (44%), Positives = 74/116 (63%)

Query: 96  TYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVE 155
           +Y  N++KE++L+   +NF  QY+  YP R+PL M   NECGV+K VCT+++ T  P  +
Sbjct: 69  SYTTNSEKEEMLLGLADNFWHQYTHLYPDRKPLFMCPRNECGVEKFVCTTLHPTLLPYSD 128

Query: 156 FKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
              W   A FVS+++  EPL+ P  LP  L S ++V   QSG+CF+ S LL SLLL
Sbjct: 129 LYDWDQSAKFVSEYLTMEPLNPPLELPRSLFSSTSVLQKQSGNCFDFSVLLCSLLL 184

May play a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis. May be involved in sperm motility.

Xenopus tropicalis (taxid: 8364)

>sp|Q95JL1|CC135_MACFA Coiled-coil domain-containing protein lobo homolog OS=Macaca fascicularis GN=CCDC135 PE=2 SV=3

 Score = 97.1 bits (240), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/175 (36%), Positives = 86/175 (49%), Gaps = 3/175 (1%)

Query: 37  RRPPIVQPIVPIKYETLDRDKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPET 96
           R   +++P+   K ET    ++L   R    +L  +  P     P         S  P +
Sbjct: 27  RTEKMMRPVEVRKEETTLTQEML---RDLEKKLSEIQIPISAELPAFTKDTIDISKLPVS 83

Query: 97  YLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPLVEF 156
           Y  NT KE+ L+   +NF RQYS   P R PL +   NEC V K V T++  T  P  E 
Sbjct: 84  YKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTLMPYPEL 143

Query: 157 KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
            +W  CA FVSD +   PL  P   P  L S +TV N Q G+CF+ ST+L S+L+
Sbjct: 144 YNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLNYQKGNCFDFSTMLCSMLI 198

Plays a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis. May be involved in sperm motility.

Macaca fascicularis (taxid: 9541)

>sp|Q8IY82|CC135_HUMAN Coiled-coil domain-containing protein lobo homolog OS=Homo sapiens GN=CCDC135 PE=2 SV=3

 Score = 93.2 bits (230), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 67/121 (55%)

Query: 91  SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
           S  P +Y  NT KE+ L+   +NF RQYS   P R PL +   NEC V K V T++  T 
Sbjct: 78  SKLPISYKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTL 137

Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
            P  E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+ STLL S+L
Sbjct: 138 MPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFDFSTLLCSML 197

Query: 211 L 211
           +
Sbjct: 198 I 198

Plays a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis. May be involved in sperm motility.

Homo sapiens (taxid: 9606)

>sp|Q6V3W6|CC135_MOUSE Coiled-coil domain-containing protein lobo homolog OS=Mus musculus GN=Ccdc135 PE=1 SV=4

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/118 (43%), Positives = 66/118 (55%)

Query: 94  PETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPL 153
           P +Y  N+ KE+ L+   +NF RQYS   P R PL +   NEC V K V T++  T  P 
Sbjct: 82  PPSYTTNSLKEEHLLLVADNFSRQYSHLCPDRVPLFLHPLNECNVPKFVSTTLRPTLMPY 141

Query: 154 VEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
            E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+ STLL S+L+
Sbjct: 142 PELYNWDSCAQFVSDFLTMVPLVDPLKPPTHLYSSTTVLKCQKGNCFDFSTLLCSMLI 199

May be involved in sperm motility (By similarity). Plays a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis.

Mus musculus (taxid: 10090)

>sp|A8JAM0|CC135_CHLRE Coiled-coil domain-containing protein lobo homolog (Fragment) OS=Chlamydomonas reinhardtii GN=FAP50 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/125 (34%), Positives = 72/125 (57%)

Query: 87  VPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSI 146
           +  A   P ++ +++  E  ++ Y ++F+R +   YP RRPL +   NECGV K VCTS+
Sbjct: 612 INTAGKMPRSFTQHSAHEARVLQYVQDFQRIFEELYPYRRPLYLTPRNECGVPKFVCTSL 671

Query: 147 NVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLL 206
             ++    E     G + FV+D + YEPL+ P + P  L SP +    ++G  F+++T+L
Sbjct: 672 RPSQLVYTELYDLDGASQFVADFLSYEPLEDPLHPPDTLPSPMSALEWRAGDSFDMATVL 731

Query: 207 VSLLL 211
            S+LL
Sbjct: 732 ASMLL 736

May play a role in the regulation of germ cells differentiation, particularly during meiosis and spermiogenesis (By similarity). May be involved in sperm motility.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|G2HE57|CC135_PANTR Coiled-coil domain-containing protein lobo homolog OS=Pan troglodytes GN=CCDC135 PE=2 SV=1

 Score = 89.7 bits (221), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 66/121 (54%)

Query: 91  SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
           S  P +Y  NT KE+ L+   +NF  QYS   P R PL +   NEC V K V T++  T 
Sbjct: 78  SKLPVSYKTNTPKEEHLLQVADNFSCQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTL 137

Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
            P  E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+ STLL S+L
Sbjct: 138 MPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFDFSTLLCSML 197

Query: 211 L 211
           +
Sbjct: 198 I 198

Plays a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis. May be involved in sperm motility.

Pan troglodytes (taxid: 9598)

>sp|Q2T9M4|CC135_BOVIN Coiled-coil domain-containing protein lobo homolog OS=Bos taurus GN=CCDC135 PE=2 SV=1

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 68/122 (55%)

Query: 90  ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVT 149
            S  P +Y  NT KE+ L+   +NF RQYS   P R PL +   NEC V K V T+I  T
Sbjct: 75  TSKLPLSYQSNTLKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTIRPT 134

Query: 150 RFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSL 209
             P  E  +W  CA F+SD +   PL  P   P+ L S +TV   Q G+CF+ STLL S+
Sbjct: 135 LMPYPELYNWDTCAQFISDFLSMVPLPDPLKPPLYLYSSTTVLKYQKGNCFDFSTLLCSM 194

Query: 210 LL 211
           L+
Sbjct: 195 LI 196

Plays a role in the regulation of germ cells differentiation during spermatogenesis, particularly during meiosis and spermiogenesis. May be involved in sperm motility.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
390368936	682	PREDICTED: coiled-coil domain-containing	0.618	0.195	0.5	6e-29
443711459	223	hypothetical protein CAPTEDRAFT_207331,	0.572	0.551	0.479	1e-27
443708811	879	hypothetical protein CAPTEDRAFT_151783 [	0.572	0.139	0.479	2e-27
156381896	817	predicted protein [Nematostella vectensi	0.595	0.156	0.462	6e-26
347968336	908	AGAP002677-PA [Anopheles gambiae str. PE	0.711	0.168	0.430	1e-25
291242959	870	PREDICTED: hypothetical protein [Saccogl	0.553	0.136	0.504	2e-25
198431234	837	PREDICTED: similar to coiled-coil domain	0.562	0.144	0.462	3e-25
260831294	850	hypothetical protein BRAFLDRAFT_275841 [	0.651	0.164	0.407	6e-25
449666729	825	PREDICTED: coiled-coil domain-containing	0.553	0.144	0.428	8e-24
326680037	842	PREDICTED: coiled-coil domain-containing	0.562	0.143	0.471	1e-23

>gi|390368936|ref|XP_795345.3| PREDICTED: coiled-coil domain-containing protein lobo homolog, partial [Strongylocentrotus purpuratus]

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 86/136 (63%), Gaps = 3/136 (2%)

Query: 79  LSPKSVCAVPA---ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENE 135
           L P  +   PA      YP TY  N +KEKL++ Y ENFRRQY   Y  R+PL++   NE
Sbjct: 50  LQPPKIDMTPADLPMQSYPLTYKENDNKEKLVLAYAENFRRQYVHLYRDRKPLLLCPLNE 109

Query: 136 CGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQ 195
           CGV+K VCT+I  T  P  E   + GCA FVSD++ ++PLD P +LP  L S +TV   Q
Sbjct: 110 CGVEKFVCTTIRPTTLPFQELYDYDGCAEFVSDYVTFDPLDPPVDLPKSLLSSTTVLRRQ 169

Query: 196 SGHCFELSTLLVSLLL 211
            G+CFE+STLL SLLL
Sbjct: 170 RGNCFEMSTLLCSLLL 185

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|443711459|gb|ELU05230.1| hypothetical protein CAPTEDRAFT_207331, partial [Capitella teleta]

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 83/123 (67%)

Query: 90  ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVT 149
           +S++P+++  N  KEKL++ Y ENFRRQY   Y  R+PL +   NECG++K+VCT+I  T
Sbjct: 99  SSEFPQSFKENNPKEKLILAYAENFRRQYVHLYRDRKPLFLNPNNECGLEKLVCTTIRPT 158

Query: 150 RFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSL 209
           + P  E   W G A FV+D++ +  L+    LPVRL SP+T+   Q G+CFE STLLVSL
Sbjct: 159 QLPYKELYDWDGAAEFVADYLNFTMLEPAHELPVRLLSPTTIMKRQKGNCFEYSTLLVSL 218

Query: 210 LLV 212
           L+ 
Sbjct: 219 LVA 221

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|443708811|gb|ELU03777.1| hypothetical protein CAPTEDRAFT_151783 [Capitella teleta]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 83/123 (67%)

Query: 90  ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVT 149
           +S++P+++  N  KEKL++ Y ENFRRQY   Y  R+PL +   NECG++K+VCT+I  T
Sbjct: 86  SSEFPQSFKENNPKEKLILAYAENFRRQYVHLYRDRKPLFLNPNNECGLEKLVCTTIRPT 145

Query: 150 RFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSL 209
           + P  E   W G A FV+D++ +  L+    LPVRL SP+T+   Q G+CFE STLLVSL
Sbjct: 146 QLPYKELYDWDGAAEFVADYLNFTMLEPAHELPVRLLSPTTIMKRQKGNCFEYSTLLVSL 205

Query: 210 LLV 212
           L+ 
Sbjct: 206 LVA 208

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|156381896|ref|XP_001632291.1| predicted protein [Nematostella vectensis] gi|156219345|gb|EDO40228.1| predicted protein [Nematostella vectensis]

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 84/132 (63%), Gaps = 4/132 (3%)

Query: 84  VCAVPAASDYPET----YLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQ 139
           V  +P+A  +P +    Y  N  +EKL++ + ENFRRQ+   Y  RRPL++   NECGV+
Sbjct: 18  VADMPSAKVHPNSLPGSYKTNNPQEKLVLSFAENFRRQFVHLYRDRRPLLLNPVNECGVE 77

Query: 140 KMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHC 199
           K +CT I  T  P  E   + GCA FVSD++ +EPLD P +LP +L S ++V   Q G+C
Sbjct: 78  KFICTYIRATLLPYKEIYDYDGCAQFVSDYLTFEPLDPPIDLPSKLCSSTSVLKKQQGNC 137

Query: 200 FELSTLLVSLLL 211
           FE STLL SLL+
Sbjct: 138 FEFSTLLCSLLI 149

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|347968336|ref|XP_312247.5| AGAP002677-PA [Anopheles gambiae str. PEST] gi|333468052|gb|EAA08162.5| AGAP002677-PA [Anopheles gambiae str. PEST]

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 5/158 (3%)

Query: 56  DKVLNAYRTTLGRLGLVWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFR 115
           ++ L A +  LG +   +  P    P        A DYP+TY   + KEKL++ + ENFR
Sbjct: 57  NETLEAMKRKLGVIDTCF--PAYQPPVDGQTGEDAVDYPDTYRTLSSKEKLVLLFAENFR 114

Query: 116 RQYSSRYPLRRPLVMALENECGVQKMVCTSIN--VTRFPLVEFKSWSGCASFVSDHIVYE 173
           +QY  ++P R+PLV+A  NECGVQK VCT++   V  FP +   SW   A+FV+D+IVYE
Sbjct: 115 QQYREKFPHRQPLVLAPPNECGVQKFVCTTLRPAVLLFPDL-IGSWQEIAAFVADYIVYE 173

Query: 174 PLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
           PL    N+P RL SP  V   +  + FEL+TLL S L+
Sbjct: 174 PLVDQVNMPTRLVSPDEVLKRRRANSFELATLLASFLI 211

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291242959|ref|XP_002741356.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 60/119 (50%), Positives = 76/119 (63%)

Query: 93  YPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP 152
           YP +Y  N +KE L++ Y ENFRRQ+   Y  R+PL++   NECGV+K VCT+I  T  P
Sbjct: 78  YPLSYKENDNKETLVLQYAENFRRQFVHLYRDRKPLLLNPLNECGVEKFVCTTIRPTLLP 137

Query: 153 LVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
             E   + G A FV+D+I + PL  P  LP  L SP+TV   Q GHC E+STLL SLLL
Sbjct: 138 YQEMYDYDGAAEFVADYITFVPLAPPIELPKTLFSPATVLAKQKGHCLEMSTLLCSLLL 196

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|198431234|ref|XP_002123665.1| PREDICTED: similar to coiled-coil domain containing 135 [Ciona intestinalis]

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/121 (46%), Positives = 79/121 (65%)

Query: 91  SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
           S+YPE+Y  NT+KEKL++ Y EN+RRQY   +  R+PL +   NECG++K VCT++  T 
Sbjct: 48  SEYPESYKDNTNKEKLILAYVENYRRQYVHLFRDRKPLFLNPLNECGIEKFVCTTLRPTL 107

Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
                   W GCA FV+D++  + L+ P  LP+ L SPST+   Q G+CF+ S +L SLL
Sbjct: 108 LSYKALYHWQGCAEFVADYLTMKQLEPPQELPMCLFSPSTILKRQLGNCFDFSNILCSLL 167

Query: 211 L 211
           L
Sbjct: 168 L 168

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|260831294|ref|XP_002610594.1| hypothetical protein BRAFLDRAFT_275841 [Branchiostoma floridae] gi|229295961|gb|EEN66604.1| hypothetical protein BRAFLDRAFT_275841 [Branchiostoma floridae]

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/140 (40%), Positives = 86/140 (61%)

Query: 72  VWTPPGGLSPKSVCAVPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMA 131
           +  P   +S   +    A +++P +Y  NT+KEKL++ Y ENFRRQY   Y  R+PL++ 
Sbjct: 40  IEVPEVEISEVHIQQEDAYAEFPMSYKENTNKEKLILAYAENFRRQYVHLYRDRKPLLLN 99

Query: 132 LENECGVQKMVCTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTV 191
             NECG++K V T+I  T  P  E   +  CA FV+D++ ++ LD P +LP +L SP+T 
Sbjct: 100 PVNECGIEKFVSTTIRPTLLPFQELYGYDNCAEFVADYLEFQALDPPVDLPNQLVSPTTA 159

Query: 192 FNGQSGHCFELSTLLVSLLL 211
              Q G+ F+ +TLL S+LL
Sbjct: 160 LKRQKGNSFDFATLLCSMLL 179

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449666729|ref|XP_002161522.2| PREDICTED: coiled-coil domain-containing protein lobo homolog [Hydra magnipapillata]

 Score =  115 bits (289), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/119 (42%), Positives = 80/119 (67%)

Query: 93  YPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP 152
           YP++Y  N ++EK ++  CENF+RQY   YP R+ L++A +NE GV+K +C++I  T   
Sbjct: 51  YPKSYFENNEQEKHMLSCCENFQRQYCQLYPDRKLLLLAPKNEFGVEKFICSTIRPTLVK 110

Query: 153 LVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL 211
            +E  ++ GC+ FV+D++ ++PLD P NLP  + SP+T    Q G CF+ + LL SLL+
Sbjct: 111 HLEMYNFIGCSRFVADYLTFKPLDSPINLPSVVSSPTTTLKLQKGTCFDYAILLCSLLI 169

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|326680037|ref|XP_683491.5| PREDICTED: coiled-coil domain-containing protein 135-like [Danio rerio]

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 77/121 (63%)

Query: 91  SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
           S YP +Y +N+ +E L++   ENFR+Q+   YP R+ L+++  NECGVQK V T++  + 
Sbjct: 54  SRYPSSYKQNSSQETLMLAMAENFRQQFVLLYPDRKALLLSPVNECGVQKFVSTTLRSSL 113

Query: 151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL 210
            P  E   W GCASFVSD++  E LD P  LP +L SP+ V   Q G CFE S +L SLL
Sbjct: 114 LPYPELYDWEGCASFVSDYLSLELLDPPFELPKQLSSPTRVLQTQRGTCFEFSMVLCSLL 173

Query: 211 L 211
           L
Sbjct: 174 L 174

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
FB|FBgn0083946	897	lobo "lost boys" [Drosophila m	0.506	0.121	0.481	2.4e-20
RGD|1565601	874	Ccdc135 "coiled-coil domain co	0.548	0.135	0.403	2.3e-17
UNIPROTKB|A8JAM0	1159	FAP50 "Coiled-coil domain-cont	0.534	0.099	0.330	1.5e-16
UNIPROTKB|Q8IY82	874	CCDC135 "Coiled-coil domain-co	0.516	0.127	0.423	1.7e-16
MGI|MGI:2685616	876	Ccdc135 "coiled-coil domain co	0.502	0.123	0.416	4.5e-16
UNIPROTKB|Q2T9M4	872	CCDC135 "Coiled-coil domain-co	0.516	0.127	0.423	5.7e-16
UNIPROTKB|E1BQT1	812	E1BQT1 "Uncharacterized protei	0.409	0.108	0.420	7.7e-15

FB|FBgn0083946 lobo "lost boys" [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 53/110 (48%), Positives = 67/110 (60%)

Query:    93 YPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFP 152
             YP +Y   + KE+LL+ Y ENFR+Q    YP RR +V+AL NEC VQK VCT+I  T F 
Sbjct:    93 YPPSYYTLSPKERLLLLYAENFRKQLVLSYPKRRAMVLALPNECKVQKFVCTTIRPTAFI 152

Query:   153 LVEF-KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
               +   S    A FV+D I YEPL  P NLP RL SP T+   + G+ +E
Sbjct:   153 YTQLISSVEEIAKFVADFIQYEPLQDPINLPNRLISPETLLRKRKGNSYE 202

GO:0003674 "molecular_function" evidence=ND

GO:0046693 "sperm storage" evidence=IMP

GO:0031514 "motile cilium" evidence=IDA

GO:0030317 "sperm motility" evidence=IMP

RGD|1565601 Ccdc135 "coiled-coil domain containing 135" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 2.3e-17, P = 2.3e-17
 Identities = 48/119 (40%), Positives = 63/119 (52%)

Query:    84 VCAVPA-ASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMV 142
             +C VP   +  P +Y  N+ KE+ L+   +NF RQYS   P R PL +   NEC V K V
Sbjct:    71 ICQVPVDVTKLPPSYTTNSLKEEHLLLVADNFSRQYSHLCPDRVPLFLHPLNECNVPKFV 130

Query:   143 CTSINVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
              T++  T  P  E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+
Sbjct:   131 STTLRPTLMPYPELYNWDSCAQFVSDFLTMVPLVDPLKPPTHLYSSTTVLQCQKGNCFD 189

GO:0005737 "cytoplasm" evidence=IEA;ISO

UNIPROTKB|A8JAM0 FAP50 "Coiled-coil domain-containing protein lobo homolog" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 202 (76.2 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
 Identities = 38/115 (33%), Positives = 63/115 (54%)

Query:    87 VPAASDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSI 146
             +  A   P ++ +++  E  ++ Y ++F+R +   YP RRPL +   NECGV K VCTS+
Sbjct:   612 INTAGKMPRSFTQHSAHEARVLQYVQDFQRIFEELYPYRRPLYLTPRNECGVPKFVCTSL 671

Query:   147 NVTRFPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
               ++    E     G + FV+D + YEPL+ P + P  L SP +    ++G  F+
Sbjct:   672 RPSQLVYTELYDLDGASQFVADFLSYEPLEDPLHPPDTLPSPMSALEWRAGDSFD 726

GO:0031514 "motile cilium" evidence=IDA

UNIPROTKB|Q8IY82 CCDC135 "Coiled-coil domain-containing protein lobo homolog" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 1.7e-16, P = 1.7e-16
 Identities = 47/111 (42%), Positives = 59/111 (53%)

Query:    91 SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
             S  P +Y  NT KE+ L+   +NF RQYS   P R PL +   NEC V K V T++  T 
Sbjct:    78 SKLPISYKTNTPKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTLRPTL 137

Query:   151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
              P  E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+
Sbjct:   138 MPYPELYNWDSCAQFVSDFLTMVPLPDPLKPPSHLYSSTTVLKYQKGNCFD 188

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:2685616 Ccdc135 "coiled-coil domain containing 135" [Mus musculus (taxid:10090)]

 Score = 212 (79.7 bits), Expect = 4.5e-16, P = 4.5e-16
 Identities = 45/108 (41%), Positives = 58/108 (53%)

Query:    94 PETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTRFPL 153
             P +Y  N+ KE+ L+   +NF RQYS   P R PL +   NEC V K V T++  T  P 
Sbjct:    82 PPSYTTNSLKEEHLLLVADNFSRQYSHLCPDRVPLFLHPLNECNVPKFVSTTLRPTLMPY 141

Query:   154 VEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
              E  +W  CA FVSD +   PL  P   P  L S +TV   Q G+CF+
Sbjct:   142 PELYNWDSCAQFVSDFLTMVPLVDPLKPPTHLYSSTTVLKCQKGNCFD 189

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005929 "cilium" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030154 "cell differentiation" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q2T9M4 CCDC135 "Coiled-coil domain-containing protein lobo homolog" [Bos taurus (taxid:9913)]

 Score = 211 (79.3 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 47/111 (42%), Positives = 60/111 (54%)

Query:    91 SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
             S  P +Y  NT KE+ L+   +NF RQYS   P R PL +   NEC V K V T+I  T 
Sbjct:    76 SKLPLSYQSNTLKEEHLLQVADNFSRQYSHLCPDRVPLFLHPLNECEVPKFVSTTIRPTL 135

Query:   151 FPLVEFKSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFE 201
              P  E  +W  CA F+SD +   PL  P   P+ L S +TV   Q G+CF+
Sbjct:   136 MPYPELYNWDTCAQFISDFLSMVPLPDPLKPPLYLYSSTTVLKYQKGNCFD 186

GO:0005737 "cytoplasm" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

UNIPROTKB|E1BQT1 E1BQT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 200 (75.5 bits), Expect = 7.7e-15, P = 7.7e-15
 Identities = 37/88 (42%), Positives = 54/88 (61%)

Query:    91 SDYPETYLRNTDKEKLLIWYCENFRRQYSSRYPLRRPLVMALENECGVQKMVCTSINVTR 150
             S  P++Y  N+ +EK L+   +++ +QY+   P R+PL +   NECGV+K V T++  T 
Sbjct:    80 SQLPDSYKMNSPREKKLLRIADHYHQQYTHLCPERKPLFLHPVNECGVEKFVSTTVRPTL 139

Query:   151 FPLVEFKSWSGCASFVSDHIVYEPLDHP 178
              P  E   W GCASFVSD++  EPL  P
Sbjct:   140 LPYTELYHWDGCASFVSDYLTMEPLKCP 167


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.429    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      215       175   0.00078  109 3  11 22  0.40    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  176 KB (2102 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.93u 0.06s 15.99t   Elapsed:  00:00:05
  Total cpu time:  15.93u 0.06s 15.99t   Elapsed:  00:00:05
  Start:  Thu Aug 15 11:13:08 2013   End:  Thu Aug 15 11:13:13 2013

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PF01841	113	Transglut_core: Transglutaminase-like superfamily;	96.57
KOG3639|consensus	1239		96.28
PF04473	153	DUF553: Transglutaminase-like domain; InterPro: IP	94.0
smart00460	68	TGc Transglutaminase/protease-like homologues. Tra	87.82
COG1305	319	Transglutaminase-like enzymes, putative cysteine p	87.72

>PF01841 Transglut_core: Transglutaminase-like superfamily; InterPro: IPR002931 This domain is found in many proteins known to have transglutaminase activity, i

Probab=96.57  E-value=0.00081  Score=49.58  Aligned_cols=51  Identities=25%  Similarity=0.417  Sum_probs=38.4

Q ss_pred             cChhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968         157 KSWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL  211 (215)
Q Consensus       157 y~~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl  211 (215)
                      .-...+.+||.+.+.|.    .......-.+|..+|..++|+|.|+|+|+++||-
T Consensus        16 ~~~~~i~~~v~~~~~y~----~~~~~~~~~~~~~~l~~~~G~C~~~a~l~~allr   66 (113)
T PF01841_consen   16 EKAKAIYDWVRSNIRYD----DPNYSPGPRDASEVLRSGRGDCEDYASLFVALLR   66 (113)
T ss_dssp             CCCCCCCCCCCCCCCEC-----TCCCCCCTTHHHHHHCEEESHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcEEe----CCCCCCCCCCHHHHHHcCCCccHHHHHHHHHHHh
Confidence            44455667888999999    2222333345999999999999999999999973

e. which cross-link proteins through an acyl-transfer reaction between the gamma-carboxamide group of peptide-bound glutamine and the epsilon-amino group of peptide-bound lysine, resulting in a epsilon-(gamma-glutamyl)lysine isopeptide bond. Tranglutaminases have been found in a diverse range of species, from bacteria through to mammals. The enzymes require calcium binding and their activity leads to post-translational modification of proteins through acyl-transfer reactions, involving peptidyl glutamine residues as acyl donors and a variety of primary amines as acyl acceptors, with the generation of proteinase resistant isopeptide bonds []. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterised transglutaminase, the human blood clotting factor XIIIa' []. On the basis of the experimentally demonstrated activity of the Methanobacterium phage psiM2 pseudomurein endoisopeptidase [], it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease []. A subunit of plasma Factor XIII revealed that each Factor XIIIA subunit is composed of four domains (termed N-terminal beta-sandwich, core domain (containing the catalytic and the regulatory sites), and C-terminal beta-barrels 1 and 2) and that two monomers assemble into the native dimer through the surfaces in domains 1 and 2, in opposite orientation. This organisation in four domains is highly conserved during evolution among transglutaminase isoforms [].; PDB: 2F4M_A 2F4O_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B ....

>KOG3639|consensus

Probab=96.28  E-value=0.01  Score=61.18  Aligned_cols=111  Identities=17%  Similarity=0.149  Sum_probs=85.0

Q ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCCC--CCcceecCcccCCcceeeeeeeccCCCCcccc---------ChhhHHHHhh
Q psy1968          99 RNTDKEKLLIWYCENFRRQYSSRYPLR--RPLVMALENECGVQKMVCTSINVTRFPLVEFK---------SWSGCASFVS  167 (215)
Q Consensus        99 ~nS~KE~llL~yAenF~rQF~~lyPdR--RpL~L~p~NECGV~KFVCTTIRPT~Lpy~ELy---------~~~~cA~FVS  167 (215)
                      ..|-....+|+.++||..+-..+||.|  +|+++--   +|-.-|+--|+||..-| .+|-         +..-+||++|
T Consensus       877 feS~EdeKlLea~ekfeaeca~kFPkR~cl~lViDi---nghstf~TRYLkPiaPP-Qelln~~annlqanaeLiaR~aa  952 (1239)
T KOG3639|consen  877 FESFEDEKLLEACEKFEAECAEKFPKRICLPLVIDI---NGHSTFCTRYLKPIAPP-QELLNENANNLQANAELIARLAA  952 (1239)
T ss_pred             cccccchHHHHHHHHHHHHHHHhCccccccceEEec---CCceeEeehhccCCCCh-HHHHhhCccchhhchHHHHHHHH
Confidence            345566789999999999999999999  7887743   56666666699999988 4543         4455677777


Q ss_pred             cccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhhhc
Q psy1968         168 DHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLVR  213 (215)
Q Consensus       168 d~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlGa  213 (215)
                      -...--+-.+-+.--+.|.....++.--.|+=.+||||||-.++-+
T Consensus       953 ~Ipf~~drVdfgg~cDiWgnsdQfldiaaGdeEEhatLLc~~fLhf  998 (1239)
T KOG3639|consen  953 KIPFGMDRVDFGGHCDIWGNSDQFLDIAAGDEEEHATLLCCWFLHF  998 (1239)
T ss_pred             hcccCCCccccCccccccccHHHHHHHhcCchHHhHHHHHHHHHHh
Confidence            3332223355566678899999999999999999999999987754

>PF04473 DUF553: Transglutaminase-like domain; InterPro: IPR007562 This entry represents a transglutaminase-like domain found in a family of uncharacterised archaeal proteins that had previously been called DUF553 and UPF0252

Probab=94.00  E-value=0.036  Score=46.46  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=28.0

Q ss_pred             ccccChhhHhhcccCCcchhhHHHHHhhhhc
Q psy1968         183 VRLRSPSTVFNGQSGHCFELSTLLVSLLLVR  213 (215)
Q Consensus       183 ~~l~SPtt~L~~QkGnCFD~S~LLCSLLlGa  213 (215)
                      ..+.||..++..++|.|-|+|+|..+||+.+
T Consensus        62 ~~i~tp~etl~~k~GiC~DYA~Lta~lLl~~   92 (153)
T PF04473_consen   62 TYIQTPYETLKYKKGICGDYAILTAALLLNM   92 (153)
T ss_pred             ccccCHHHHHHcCCeeeHHHHHHHHHHHHHC
Confidence            3567999999999999999999999999863

>smart00460 TGc Transglutaminase/protease-like homologues

Probab=87.82  E-value=0.26  Score=33.51  Aligned_cols=21  Identities=33%  Similarity=0.624  Sum_probs=18.7

Q ss_pred             HhhcccCCcchhhHHHHHhhh
Q psy1968         191 VFNGQSGHCFELSTLLVSLLL  211 (215)
Q Consensus       191 ~L~~QkGnCFD~S~LLCSLLl  211 (215)
                      +|+.+.|+|.++|.+++++|-
T Consensus         1 ~~~~~~G~C~~~a~l~~~llr   21 (68)
T smart00460        1 LLKTKYGTCGEFAALFVALLR   21 (68)
T ss_pred             CCcccceeeHHHHHHHHHHHH
Confidence            467899999999999999984

Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.

>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]

Probab=87.72  E-value=0.59  Score=39.32  Aligned_cols=31  Identities=29%  Similarity=0.349  Sum_probs=27.3

Q ss_pred             CccccChhhHhhcccCCcchhhHHHHHhhhh
Q psy1968         182 PVRLRSPSTVFNGQSGHCFELSTLLVSLLLV  212 (215)
Q Consensus       182 P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlG  212 (215)
                      -....++..+|..++|+|-|+|.|+.+||=.
T Consensus       180 ~~~~~~~~~~l~~~~G~C~d~a~l~val~Ra  210 (319)
T COG1305         180 TPVTGSASDALRLGRGVCRDFAHLLVALLRA  210 (319)
T ss_pred             CCCCCCHHHHHHhCCcccccHHHHHHHHHHH
Confidence            4577889999999999999999999999843

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	215
4fgq_A	193	Periplasmic protein; DUF920, protease, calcium bin	94.34
3kd4_A	506	Putative protease; structural genomics, joint cent	93.49
3isr_A	293	Transglutaminase-like enzymes, putative cysteine;	90.27

>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A

Probab=94.34  E-value=0.025  Score=48.12  Aligned_cols=52  Identities=17%  Similarity=0.227  Sum_probs=38.0

Q ss_pred             hhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhhh
Q psy1968         160 SGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLLV  212 (215)
Q Consensus       160 ~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLlG  212 (215)
                      ...-+||- -|.|..=..--+..++|.+|..+|....|||.|+|++--.+|+.
T Consensus        48 ~~VN~~vN-~i~~~~D~~~~G~~DyWatP~E~l~~g~GDCEDyaI~K~~~L~~   99 (193)
T 4fgq_A           48 EKVNSFFN-QFNYETDPITGASDDYWKSPVEFIVDGGGDCEDFAIIKYFTLVA   99 (193)
T ss_dssp             HHHHHHHH-TSEECCCTTTSSCCSSCCCHHHHHHHTEECHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hcccccchhhcCCCCcCCCcHhHhCCCCcCcHHHHHHHHHHHHH
Confidence            34445665 44443322224557999999999999999999999998888864

>3kd4_A Putative protease; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 2.00A {Parabacteroides distasonis atcc 8503}

Probab=93.49  E-value=0.026  Score=52.45  Aligned_cols=52  Identities=17%  Similarity=0.208  Sum_probs=39.3

Q ss_pred             hhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhhh
Q psy1968         159 WSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLLL  211 (215)
Q Consensus       159 ~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLLl  211 (215)
                      -+.+-+||.+-+.|.+...-.. .-.-.++..+|+.+.|||.|+|+||++||=
T Consensus       248 ~~~iy~~V~~~i~y~~~~~~~~-g~~~~~a~~vl~~~~G~C~d~a~Ll~AllR  299 (506)
T 3kd4_A          248 VNIIRDHILNNLSTCPIPMAMT-GYTVRDIDTVLRSAYGTPLEIAQLLNVMLN  299 (506)
T ss_dssp             HHHHHHHHHHHCEECCCCGGGG-TTCCCCHHHHHHHTEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccEecceecccC-CCCCCCHHHHHHhCCcchHHHHHHHHHHHH
Confidence            3456669999999986532111 112357999999999999999999999984

>3isr_A Transglutaminase-like enzymes, putative cysteine; protease, hutchinsoni MCSG, structural genomics; 1.90A {Cytophaga hutchinsonii}

Probab=90.27  E-value=0.15  Score=44.79  Aligned_cols=48  Identities=13%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             ChhhHHHHhhcccccccCCCCCCCCccccChhhHhhcccCCcchhhHHHHHhh
Q psy1968         158 SWSGCASFVSDHIVYEPLDHPTNLPVRLRSPSTVFNGQSGHCFELSTLLVSLL  210 (215)
Q Consensus       158 ~~~~cA~FVSd~L~YEpLe~P~~~P~~l~SPtt~L~~QkGnCFD~S~LLCSLL  210 (215)
                      -...+.+||.+-+.|.+-..+     .-.++..+|..++|.|-|+|.|+++||
T Consensus       145 ~~~ai~~~v~~~~~Y~~~~~~-----~~~~a~~~l~~~~G~C~d~A~l~val~  192 (293)
T 3isr_A          145 KVLAITDWIYNNVEYISGSTN-----SQTSAFDTITERAGVCRDFAHLGIALC  192 (293)
T ss_dssp             HHHHHHHHHHHHSEECTTSCC-----TTCCHHHHHHHCEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcEEeccCCC-----CCCCHHHhhcCCcEehHHHHHHHHHHH
Confidence            356778899999999875332     224788999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00