Psyllid ID: psy1987

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MVKKRPLLVYPFDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME
Secondary Structure (PSIPRED)
ccccccccccccccEEcccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccEEEEcccEEEEEccccEEcccccEEEEEEEEEcccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccEEccccEEEEEcccccEEEEccccccccccccccccccccccEEEEEcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mvkkrpllvypfdatlycsqpeldqsytylssrqvvdgasddslsaedndvkrskrrditltrrPSYRKILNDLRGaeiatgkvessgsdcddsnldselsshslpthyqtvipaghihlssqggdhqtlptitmtnassaggtivqysqdgqffvpseigtgedqSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME
Flexible Loop (DISEMBL)
mvkkrpllvypfdATLYCSQPELDQSYTYLSSRQvvdgasddslsaedndvkrskrrditltrrpsyrkilndlrgaeiatgkvessgsdcDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPseigtgedqsrkrEMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME
Low Complexity Region (SEG)
MVKKRPLLVYPFDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLknreaakecrrkkkeYIKCLENRVAILENQNKALIDELKSLKELYCQQEME
Disordered region (IsUnstruct)
******LLVYPFDATLYCSQPELDQSYTYL******************************************************************************YQTVIPAGHIH***********************GTIVQYSQDGQFFV********************************KEYIKCLENRVAILENQNKALIDELKSLKELYC*****
Disordered Region (DISOPRED)
********VYPFDATLY*****************************************************************************************************************************************************************************YIKCLENRVAILENQNKALIDELKSL***YC*****
Disordered Region (DISEMBL)
MVKKRPLLVYPFDATLYCSQPELDQSYTYLSSRQVVD****************SKRRDITLTRRPSYRKILNDLRGAEIAT*********************HSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME
Disordered Region (DISPRO)
***KRPLLVYPFDATLYCSQPELDQSYTYLSSRQVVDGA******************DITLTRRPSYRKILNDLR***********************ELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKKRPLLVYPFDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYCQQEME
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
P27925	325	Cyclic AMP-responsive ele	yes	N/A	0.898	0.624	0.412	1e-36
P15337	341	Cyclic AMP-responsive ele	yes	N/A	0.792	0.524	0.437	5e-36
P16220	341	Cyclic AMP-responsive ele	yes	N/A	0.792	0.524	0.437	5e-36
Q01147	341	Cyclic AMP-responsive ele	yes	N/A	0.792	0.524	0.437	5e-36
P79145	360	cAMP-responsive element m	no	N/A	0.893	0.561	0.388	7e-34
P18846	271	Cyclic AMP-dependent tran	no	N/A	0.707	0.590	0.424	2e-32
Q08DA8	270	Cyclic AMP-dependent tran	no	N/A	0.699	0.585	0.431	1e-31
P81269	269	Cyclic AMP-dependent tran	no	N/A	0.703	0.591	0.417	3e-30
Q1LZH5	360	cAMP-responsive element m	no	N/A	0.902	0.566	0.363	3e-29
Q03060	361	cAMP-responsive element m	no	N/A	0.902	0.565	0.363	4e-29

>sp|P27925|CREB1_BOVIN Cyclic AMP-responsive element-binding protein 1 OS=Bos taurus GN=CREB1 PE=1 SV=2

 Score =  153 bits (386), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 143/257 (55%), Gaps = 54/257 (21%)

Query: 16  LYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLR 75
           +  +QP + QS    + +      S+DS  + D+     KRR+I L+RRPSYRKILNDL 
Sbjct: 68  IQAAQPSVIQSPQVQTVQISTIAESEDSQESVDSVTDSQKRREI-LSRRPSYRKILNDLS 126

Query: 76  GAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------VIPAGHIHLSSQGGDH 127
                  ++E   S+ + S     +++ ++PT  YQT       +   G I L++ G D 
Sbjct: 127 SDAPGVPRIEEEKSEEETS--APAITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDG 184

Query: 128 -QTLPTITMTNASSA--GGTIVQYSQ--DGQ-FFVPSE---------------------- 159
            Q L T+TMTNA++   G TI+QY+Q  DGQ   VPS                       
Sbjct: 185 VQGLQTLTMTNAAATQPGTTILQYAQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTS 244

Query: 160 -IGTG--------------EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILEN 204
            I  G              E+ +RKRE+RL+KNREAA+ECRRKKKEY+KCLENRVA+LEN
Sbjct: 245 TIAPGVVMASSPALPTQPAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLEN 304

Query: 205 QNKALIDELKSLKELYC 221
           QNK LI+ELK+LK+LYC
Sbjct: 305 QNKTLIEELKALKDLYC 321

Phosphorylation-dependent transcription factor that stimulates transcription upon binding to the DNA cAMP response element (CRE), a sequence present in many viral and cellular promoters. Transcription activation is enhanced by the TORC coactivators which act independently of Ser-117 phosphorylation. Involved in different cellular processes including the synchronization of circadian rhythmicity and the differentiation of adipose cells.
Bos taurus (taxid: 9913)

>sp|P15337|CREB1_RAT Cyclic AMP-responsive element-binding protein 1 OS=Rattus norvegicus GN=Creb1 PE=1 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 134/233 (57%), Gaps = 54/233 (23%)

Query: 40  SDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSE 99
           S+DS  + D+     KRR+I L+RRPSYRKILNDL        ++E   S+ + S     
Sbjct: 108 SEDSQESVDSVTDSQKRREI-LSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETSA--PA 164

Query: 100 LSSHSLPTH-YQT-------VIPAGHIHLSSQGGDH-QTLPTITMTNASSA--GGTIVQY 148
           +++ ++PT  YQT       +   G I L++ G D  Q L T+TMTNA++   G TI+QY
Sbjct: 165 ITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQY 224

Query: 149 SQ--DGQ-FFVPSE-----------------------IGTG--------------EDQSR 168
           +Q  DGQ   VPS                        I  G              E+ +R
Sbjct: 225 AQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAAR 284

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221
           KRE+RL+KNREAA+ECRRKKKEY+KCLENRVA+LENQNK LI+ELK+LK+LYC
Sbjct: 285 KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYC 337

Phosphorylation-dependent transcription factor that stimulates transcription upon binding to the DNA cAMP response element (CRE), a sequence present in many viral and cellular promoters. Transcription activation is enhanced by the TORC coactivators which act independently of Ser-117 phosphorylation. Involved in different cellular processes including the synchronization of circadian rhythmicity and the differentiation of adipose cells.

Rattus norvegicus (taxid: 10116)

>sp|P16220|CREB1_HUMAN Cyclic AMP-responsive element-binding protein 1 OS=Homo sapiens GN=CREB1 PE=1 SV=2

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 134/233 (57%), Gaps = 54/233 (23%)

Query: 40  SDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSE 99
           S+DS  + D+     KRR+I L+RRPSYRKILNDL        ++E   S+ + S     
Sbjct: 108 SEDSQESVDSVTDSQKRREI-LSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETS--APA 164

Query: 100 LSSHSLPTH-YQT-------VIPAGHIHLSSQGGDH-QTLPTITMTNASSA--GGTIVQY 148
           +++ ++PT  YQT       +   G I L++ G D  Q L T+TMTNA++   G TI+QY
Sbjct: 165 ITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQY 224

Query: 149 SQ--DGQ-FFVPSE-----------------------IGTG--------------EDQSR 168
           +Q  DGQ   VPS                        I  G              E+ +R
Sbjct: 225 AQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAAR 284

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221
           KRE+RL+KNREAA+ECRRKKKEY+KCLENRVA+LENQNK LI+ELK+LK+LYC
Sbjct: 285 KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYC 337

Phosphorylation-dependent transcription factor that stimulates transcription upon binding to the DNA cAMP response element (CRE), a sequence present in many viral and cellular promoters. Transcription activation is enhanced by the TORC coactivators which act independently of Ser-133 phosphorylation. Involved in different cellular processes including the synchronization of circadian rhythmicity and the differentiation of adipose cells.

Homo sapiens (taxid: 9606)

>sp|Q01147|CREB1_MOUSE Cyclic AMP-responsive element-binding protein 1 OS=Mus musculus GN=Creb1 PE=1 SV=1

 Score =  150 bits (380), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 134/233 (57%), Gaps = 54/233 (23%)

Query: 40  SDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSE 99
           S+DS  + D+     KRR+I L+RRPSYRKILNDL        ++E   S+ + S     
Sbjct: 108 SEDSQESVDSVTDSQKRREI-LSRRPSYRKILNDLSSDAPGVPRIEEEKSEEETS--APA 164

Query: 100 LSSHSLPTH-YQT-------VIPAGHIHLSSQGGDH-QTLPTITMTNASSA--GGTIVQY 148
           +++ ++PT  YQT       +   G I L++ G D  Q L T+TMTNA++   G TI+QY
Sbjct: 165 ITTVTVPTPIYQTSSGQYIAITQGGAIQLANNGTDGVQGLQTLTMTNAAATQPGTTILQY 224

Query: 149 SQ--DGQ-FFVPSE-----------------------IGTG--------------EDQSR 168
           +Q  DGQ   VPS                        I  G              E+ +R
Sbjct: 225 AQTTDGQQILVPSNQVVVQAASGDVQTYQIRTAPTSTIAPGVVMASSPALPTQPAEEAAR 284

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221
           KRE+RL+KNREAA+ECRRKKKEY+KCLENRVA+LENQNK LI+ELK+LK+LYC
Sbjct: 285 KREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEELKALKDLYC 337

Phosphorylation-dependent transcription factor that stimulates transcription upon binding to the DNA cAMP response element (CRE), a sequence present in many viral and cellular promoters. Transcription activation is enhanced by the TORC coactivators which act independently of Ser-133 phosphorylation. Involved in different cellular processes including the synchronization of circadian rhythmicity and the differentiation of adipose cells.

Mus musculus (taxid: 10090)

>sp|P79145|CREM_CANFA cAMP-responsive element modulator OS=Canis familiaris GN=CREM PE=2 SV=2

 Score =  144 bits (362), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 106/273 (38%), Positives = 139/273 (50%), Gaps = 71/273 (26%)

Query: 16  LYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLR 75
           +   QP + QS   + + QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L 
Sbjct: 88  IQTPQPSVIQS-PQIQTVQVATIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELS 145

Query: 76  GAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------VIPAGHIHLSSQGGDH 127
                  K+E   S+ + +     +++ ++PT  YQT       +   G I +S+ G D 
Sbjct: 146 SDVPGVPKIEEEKSEEEGT--PPNIATMAVPTSIYQTSTGQYIAIAQGGTIQISNPGSDG 203

Query: 128 -QTLPTITMTN--ASSAGGTIVQY---SQDG--QFFVPSE-----------------IGT 162
            Q L  +TMTN  A   G TIVQY   S DG  QFFVP                     T
Sbjct: 204 VQGLQALTMTNSGAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQDEETELAPSHMAAAT 263

Query: 163 G----------------------------------EDQSRKREMRLLKNREAAKECRRKK 188
           G                                  E+ +RKRE+RL+KNREAA+ECRRKK
Sbjct: 264 GDMPTYQIRAPTTALPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKNREAARECRRKK 323

Query: 189 KEYIKCLENRVAILENQNKALIDELKSLKELYC 221
           KEY+KCLENRVA+LENQNK LI+ELK+LK+LYC
Sbjct: 324 KEYVKCLENRVAVLENQNKTLIEELKALKDLYC 356

Transcriptional regulator that binds the cAMP response element (CRE), a sequence present in many viral and cellular promoters. Isoforms are either transcriptional activators or repressors. Isoform Tau is a transcriptional activator. Plays a role in spermatogenesis and is involved in spermatid maturation.

Canis familiaris (taxid: 9615)

>sp|P18846|ATF1_HUMAN Cyclic AMP-dependent transcription factor ATF-1 OS=Homo sapiens GN=ATF1 PE=1 SV=2

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/219 (42%), Positives = 122/219 (55%), Gaps = 59/219 (26%)

Query: 61  LTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------V 112
           L RRPSYRKIL DL   +    K      D ++S + + ++S S+PT  YQT       +
Sbjct: 58  LARRPSYRKILKDLSSEDTRGRK-----GDGENSGVSAAVTSMSVPTPIYQTSSGQYIAI 112

Query: 113 IPAGHIHLSSQGGDH-QTLPTITMTNASSA--GGTIVQYSQ--DGQ-FFVPS-----EIG 161
            P G + L+S G D  Q L T+TMTN+ S   G TI+QY+Q  DGQ   VPS     +  
Sbjct: 113 APNGALQLASPGTDGVQGLQTLTMTNSGSTQQGTTILQYAQTSDGQQILVPSNQVVVQTA 172

Query: 162 TGEDQSR-----------------------------------KREMRLLKNREAAKECRR 186
           +G+ Q+                                    KRE+RL+KNREAA+ECRR
Sbjct: 173 SGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTTKTDDPQLKREIRLMKNREAARECRR 232

Query: 187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225
           KKKEY+KCLENRVA+LENQNK LI+ELK+LK+LY  + +
Sbjct: 233 KKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSNKSV 271

This protein binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3'), a sequence present in many viral and cellular promoters. Binds to the Tax-responsive element (TRE) of HTLV-I. Mediates PKA-induced stimulation of CRE-reporter genes. Represses the expression of FTH1 and other antioxidant detoxification genes. Triggers cell proliferation and transformation.

Homo sapiens (taxid: 9606)

>sp|Q08DA8|ATF1_BOVIN Cyclic AMP-dependent transcription factor ATF-1 OS=Bos taurus GN=ATF1 PE=2 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/220 (43%), Positives = 120/220 (54%), Gaps = 62/220 (28%)

Query: 61  LTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLD-SELSSHSLPTH-YQT------- 111
           L RRPSYRKIL DL   +I        G   D  N   S ++S S+PT  YQT       
Sbjct: 58  LARRPSYRKILKDLSSEDI-------RGRKGDGENPGVSAVTSMSVPTPIYQTSTGQYIA 110

Query: 112 VIPAGHIHLSSQGGDH-QTLPTITMTNASSA--GGTIVQYSQ--DGQ-FFVPS-----EI 160
           + P G + L+S G D  Q L T+TMTN+ S   G TI+QY+Q  DGQ   VPS     + 
Sbjct: 111 IAPNGALQLASPGTDGVQGLQTLTMTNSGSTQQGTTILQYAQTSDGQQILVPSNQVVVQT 170

Query: 161 GTGEDQSR-----------------------------------KREMRLLKNREAAKECR 185
            +G+ Q+                                    KRE+RL+KNREAA+ECR
Sbjct: 171 ASGDMQTYQIRTTPSATSLPQTVVMTSPVTLTSQTSKTDDPQLKREIRLMKNREAARECR 230

Query: 186 RKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225
           RKKKEY+KCLENRVA+LENQNK LI+ELK+LK+LY  + +
Sbjct: 231 RKKKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSNKSV 270

This protein binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3'), a sequence present in many viral and cellular promoters. Mediates PKA-induced stimulation of CRE-reporter genes. Represses the expression of FTH1 and other antioxidant detoxification genes. Triggers cell proliferation and transformation.

Bos taurus (taxid: 9913)

>sp|P81269|ATF1_MOUSE Cyclic AMP-dependent transcription factor ATF-1 OS=Mus musculus GN=Atf1 PE=1 SV=1

 Score =  131 bits (330), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/218 (41%), Positives = 116/218 (53%), Gaps = 59/218 (27%)

Query: 61  LTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------V 112
           L RRPSYRKIL DL   +    K E            S ++S S+P   YQT       +
Sbjct: 58  LARRPSYRKILKDLSSEDTRGRKGEGENPSI------SAITSMSVPAPIYQTSSGQYIAI 111

Query: 113 IPAGHIHLSSQGGDH-QTLPTITMTNASSAG-GTIVQYSQ--DGQ-FFVPS-----EIGT 162
            P G + L+S   D  Q L T+TMTN+SS   GTI+QY+Q  DGQ   VPS     +  +
Sbjct: 112 APNGALQLASPSTDGVQALQTLTMTNSSSTQQGTILQYAQTSDGQQILVPSNQVVVQTAS 171

Query: 163 GE-----------------------------------DQSRKREMRLLKNREAAKECRRK 187
           G+                                   D   +RE+RL+KNREAA+ECRRK
Sbjct: 172 GDMQTYQIRTTPSATSLPQTVVMTSPVTLASQTTKTDDPQLRREIRLMKNREAARECRRK 231

Query: 188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM 225
           KKEY+KCLENRVA+LENQNK LI+ELK+LK+LY  + +
Sbjct: 232 KKEYVKCLENRVAVLENQNKTLIEELKTLKDLYSHKSV 269

Binds the cAMP response element (CRE) (consensus: 5'-GTGACGT[AC][AG]-3'), a sequence present in many viral and cellular promoters. Binds to the Tax-responsive element (TRE) of HTLV-I. Mediates PKA-induced stimulation of CRE-reporter genes. Represses the expression of FTH1 and other antioxidant detoxification genes. Triggers cell proliferation and transformation.

Mus musculus (taxid: 10090)

>sp|Q1LZH5|CREM_BOVIN cAMP-responsive element modulator OS=Bos taurus GN=CREM PE=2 SV=3

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/275 (36%), Positives = 137/275 (49%), Gaps = 71/275 (25%)

Query: 12  FDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKIL 71
               +   QP + QS   + + QV   A  D  +  +  +   KRR+I L+RRPSYRKIL
Sbjct: 84  VQGVIQTPQPSVIQS-PQIQTVQVATIAETDESAESEGVIDSHKRREI-LSRRPSYRKIL 141

Query: 72  NDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------VIPAGHIHLSSQ 123
           N+L        K+E   S+ + +  +  +++ ++PT  YQT       +   G I +S+ 
Sbjct: 142 NELSSDVPGVPKIEEEKSEEEGTPPN--IAAMAVPTSIYQTSTGQYIAIAQGGTIQISNP 199

Query: 124 GGDH-QTLPTITMTN--ASSAGGTIVQY---SQDG--QFFVPSE---------------- 159
           G D  Q L  +TMTN  A   G TIVQY   S DG  QFFVP                  
Sbjct: 200 GSDGVQGLQALTMTNSGAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQDEETELAPSHM 259

Query: 160 -IGTG----------------------------------EDQSRKREMRLLKNREAAKEC 184
              TG                                  E+ +RKRE+RL+KNREAAKEC
Sbjct: 260 AAATGDMPTYQIRAPTTALPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKNREAAKEC 319

Query: 185 RRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 219
           RR+KKEY+KCLE+RVA+LE QNK LI+EL++LK++
Sbjct: 320 RRRKKEYVKCLESRVAVLEVQNKKLIEELETLKDI 354

Transcriptional regulator that binds the cAMP response element (CRE), a sequence present in many viral and cellular promoters. Isoforms are either transcriptional activators or repressors. Isoform 1 and isoform 2 are transcriptional activators. Plays a role in spermatogenesis and is involved in spermatid maturation.

Bos taurus (taxid: 9913)

>sp|Q03060|CREM_HUMAN cAMP-responsive element modulator OS=Homo sapiens GN=CREM PE=1 SV=5

 Score =  128 bits (321), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/275 (36%), Positives = 137/275 (49%), Gaps = 71/275 (25%)

Query: 12  FDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKIL 71
               +   QP + QS + + + QV   A  D  +  +  +   KRR+I L+RRPSYRKIL
Sbjct: 84  VQGVIQTPQPWVIQS-SEIHTVQVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKIL 141

Query: 72  NDLRGAEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQT-------VIPAGHIHLSSQ 123
           N+L        K+E   S+ + +     +++ ++PT  YQT       +   G I +S+ 
Sbjct: 142 NELSSDVPGVPKIEEERSEEEGT--PPSIATMAVPTSIYQTSTGQYIAIAQGGTIQISNP 199

Query: 124 GGDH-QTLPTITMTN--ASSAGGTIVQY---SQDG--QFFVPSE---------------- 159
           G D  Q L  +TMTN  A   G TIVQY   S DG  QFFVP                  
Sbjct: 200 GSDGVQGLQALTMTNSGAPPPGATIVQYAAQSADGTQQFFVPGSQVVVQDEETELAPSHM 259

Query: 160 -IGTG----------------------------------EDQSRKREMRLLKNREAAKEC 184
              TG                                  E+ +RKRE+RL+KNREAAKEC
Sbjct: 260 AAATGDMPTYQIRAPTAALPQGVVMAASPGSLHSPQQLAEEATRKRELRLMKNREAAKEC 319

Query: 185 RRKKKEYIKCLENRVAILENQNKALIDELKSLKEL 219
           RR+KKEY+KCLE+RVA+LE QNK LI+EL++LK++
Sbjct: 320 RRRKKEYVKCLESRVAVLEVQNKKLIEELETLKDI 354

Transcriptional regulator that binds the cAMP response element (CRE), a sequence present in many viral and cellular promoters. Isoforms are either transcriptional activators or repressors. Plays a role in spermatogenesis and is involved in spermatid maturation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
328720283	272	PREDICTED: cyclic AMP-responsive element	0.823	0.683	0.661	5e-62
307201142	305	cAMP response element-binding protein [H	0.827	0.613	0.651	1e-60
205361471	306	CREB1 isoform protein [Cotesia glomerata	0.831	0.614	0.623	2e-56
307189396	618	Annexin-B9 [Camponotus floridanus]	0.730	0.266	0.676	3e-56
205361477	274	CREB4 isoform protein [Cotesia glomerata	0.831	0.686	0.623	3e-56
205361473	303	CREB2 isoform protein [Cotesia glomerata	0.831	0.620	0.623	3e-56
340715767	305	PREDICTED: cyclic AMP-responsive element	0.814	0.603	0.624	5e-56
328791029	305	PREDICTED: cyclic AMP-responsive element	0.814	0.603	0.624	5e-56
383853128	306	PREDICTED: cyclic AMP-responsive element	0.814	0.601	0.624	9e-56
383853130	273	PREDICTED: cyclic AMP-responsive element	0.814	0.673	0.624	1e-55

>gi|328720283|ref|XP_001944709.2| PREDICTED: cyclic AMP-responsive element-binding protein 1-like [Acyrthosiphon pisum]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 139/210 (66%), Positives = 159/210 (75%), Gaps = 24/210 (11%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGS 89
           + + QVV+  SD+SLSA ++  KR  R D  LTRRPSYRKILND     IA GKVESSGS
Sbjct: 74  IQTLQVVEAGSDESLSANEDSPKR-IRHD-ALTRRPSYRKILND-----IAGGKVESSGS 126

Query: 90  DCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASS-AGGTIVQY 148
           DCD SNLDSELSS+SL  HYQTV PA  + LSSQG  H  +PT+TM+NA+S  GGTI+QY
Sbjct: 127 DCD-SNLDSELSSNSLSAHYQTVPPA--MQLSSQGEMHN-IPTLTMSNATSTGGGTILQY 182

Query: 149 -SQDGQFFVPSEIGTG-----------EDQSRKREMRLLKNREAAKECRRKKKEYIKCLE 196
            SQDGQFFVP     G           EDQ +KREMRLLKNREAA+ECRRKKKEYIKCLE
Sbjct: 183 ASQDGQFFVPVVTQGGSSTLNTSSLVPEDQVKKREMRLLKNREAARECRRKKKEYIKCLE 242

Query: 197 NRVAILENQNKALIDELKSLKELYCQQEME 226
           NRV++LENQNKALI+ELK+LKELYCQ + E
Sbjct: 243 NRVSVLENQNKALIEELKALKELYCQTKTE 272

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307201142|gb|EFN81053.1| cAMP response element-binding protein [Harpegnathos saltator]

 Score =  238 bits (607), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 155/201 (77%), Gaps = 14/201 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVES--S 87
           L + QVV+  SDDS S E++     KRRDI LTRRPSYRKILNDL G EI  G++    S
Sbjct: 110 LQTLQVVETGSDDSFSDEESP---KKRRDI-LTRRPSYRKILNDLGGGEITDGRLPPLES 165

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
            S+CD SN+DSE+SSHSL  HYQTVIPAG I +++QG     L T+TM+NA++ GG IVQ
Sbjct: 166 SSECD-SNVDSEVSSHSL--HYQTVIPAGTIQIATQGEGVPGLHTLTMSNAATPGGAIVQ 222

Query: 148 YSQ--DGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+Q  D QFFVP+  G G   ED +RKREMRLLKNREAA+ECRRKKKEYIKCLENRVA+L
Sbjct: 223 YAQGQDTQFFVPAYTGHGVVVEDAARKREMRLLKNREAARECRRKKKEYIKCLENRVAVL 282

Query: 203 ENQNKALIDELKSLKELYCQQ 223
           EN+N+ LIDELKSLKELY Q+
Sbjct: 283 ENRNQTLIDELKSLKELYQQK 303

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|205361471|gb|ACI03614.1| CREB1 isoform protein [Cotesia glomerata] gi|205361489|gb|ACI03623.1| CREB1 isoform protein [Cotesia rubecula]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 152/202 (75%), Gaps = 14/202 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+ ASD+S S   +D    KRRD+ LTRR SYRKILNDL  +EIA G +    S
Sbjct: 109 LQALQVVETASDESCS---DDESPKKRRDL-LTRRASYRKILNDLSASEIAAGPLPPLES 164

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
             +CD SN+DS++SSHSL   YQTVIPAG I +++QG     L T+TM+NA++AGGTIVQ
Sbjct: 165 SLECD-SNVDSDMSSHSL--QYQTVIPAGTIQIATQGEGVPGLHTLTMSNATTAGGTIVQ 221

Query: 148 YSQ--DGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+Q  D QFFVP   G G   ED +RKREMRL KNREAA+ECRRKKKEYIKCLENRVA+L
Sbjct: 222 YAQGQDTQFFVPDYTGHGVVVEDAARKREMRLQKNREAARECRRKKKEYIKCLENRVAVL 281

Query: 203 ENQNKALIDELKSLKELYCQQE 224
           EN+N+ LIDELK+LKELY  Q+
Sbjct: 282 ENRNQTLIDELKTLKELYQHQQ 303

Source: Cotesia glomerata

Species: Cotesia glomerata

Genus: Cotesia

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189396|gb|EFN73806.1| Annexin-B9 [Camponotus floridanus]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 119/176 (67%), Positives = 142/176 (80%), Gaps = 11/176 (6%)

Query: 55  KRRDITLTRRPSYRKILNDLRGAEIATGKVE--SSGSDCDDSNLDSELSSHSLPTHYQTV 112
           K+R+I LTRRPSYRKILNDL G EI  G++    S S+CD SN+DSE+SSHSL  HYQTV
Sbjct: 445 KKRNI-LTRRPSYRKILNDLGGGEITDGRLPPLESSSECD-SNVDSEVSSHSL--HYQTV 500

Query: 113 IPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQ--DGQFFVPSEIGTG---EDQS 167
           IPAG I +++QG     L T+TM+NA++AGG IVQY+Q  D QFFVP+  G G   ED +
Sbjct: 501 IPAGTIQIATQGEGVPGLHTLTMSNAATAGGAIVQYAQGQDTQFFVPAYTGHGVVVEDAA 560

Query: 168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223
           RKRE+RLLKNREAA+ECRRKKKEYIKCLENRVA+LEN+N+ LIDELKSLKELY Q+
Sbjct: 561 RKRELRLLKNREAARECRRKKKEYIKCLENRVAVLENRNQTLIDELKSLKELYQQK 616

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|205361477|gb|ACI03617.1| CREB4 isoform protein [Cotesia glomerata] gi|205361495|gb|ACI03626.1| CREB4 isoform protein [Cotesia rubecula]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/202 (62%), Positives = 152/202 (75%), Gaps = 14/202 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+ ASD+S S   +D    KRRD+ LTRR SYRKILNDL  +EIA G +    S
Sbjct: 77  LQALQVVETASDESCS---DDESPKKRRDL-LTRRASYRKILNDLSASEIAAGPLPPLES 132

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
             +CD SN+DS++SSHSL   YQTVIPAG I +++QG     L T+TM+NA++AGGTIVQ
Sbjct: 133 SLECD-SNVDSDMSSHSL--QYQTVIPAGTIQIATQGEGVPGLHTLTMSNATTAGGTIVQ 189

Query: 148 YSQ--DGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+Q  D QFFVP   G G   ED +RKREMRL KNREAA+ECRRKKKEYIKCLENRVA+L
Sbjct: 190 YAQGQDTQFFVPDYTGHGVVVEDAARKREMRLQKNREAARECRRKKKEYIKCLENRVAVL 249

Query: 203 ENQNKALIDELKSLKELYCQQE 224
           EN+N+ LIDELK+LKELY  Q+
Sbjct: 250 ENRNQTLIDELKTLKELYQHQQ 271

Source: Cotesia glomerata

Species: Cotesia glomerata

Genus: Cotesia

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|205361473|gb|ACI03615.1| CREB2 isoform protein [Cotesia glomerata] gi|205361491|gb|ACI03624.1| CREB2 isoform protein [Cotesia rubecula]

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/199 (62%), Positives = 150/199 (75%), Gaps = 11/199 (5%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+ ASD+S S   +D    KRRD+ LTRR SYRKILNDL  +EIA G +    S
Sbjct: 109 LQALQVVETASDESCS---DDESPKKRRDL-LTRRASYRKILNDLSASEIAAGPLPPLES 164

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
             +CD SN+DS++SSHSL   YQTVIPAG I +++QG     L T+TM+NA++AGGTIVQ
Sbjct: 165 SLECD-SNVDSDMSSHSL--QYQTVIPAGTIQIATQGEGVPGLHTLTMSNATTAGGTIVQ 221

Query: 148 YSQ--DGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQ 205
           Y+Q  D QFFVP      ED +RKREMRL KNREAA+ECRRKKKEYIKCLENRVA+LEN+
Sbjct: 222 YAQGQDTQFFVPGHGVVVEDAARKREMRLQKNREAARECRRKKKEYIKCLENRVAVLENR 281

Query: 206 NKALIDELKSLKELYCQQE 224
           N+ LIDELK+LKELY  Q+
Sbjct: 282 NQTLIDELKTLKELYQHQQ 300

Source: Cotesia glomerata

Species: Cotesia glomerata

Genus: Cotesia

Family: Braconidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715767|ref|XP_003396380.1| PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform 1 [Bombus terrestris] gi|350418097|ref|XP_003491733.1| PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform 2 [Bombus impatiens]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 151/197 (76%), Gaps = 13/197 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+  SDDS S  D++    +R  I LTRRPSY+KILNDL G EI  G++    S
Sbjct: 109 LQTLQVVETGSDDSFS--DSEESPEQRGGI-LTRRPSYKKILNDLGGGEITDGRLPPLES 165

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
            S+C DSN+DSE+SSHSL  HYQTVIPAG I +++QG     L T+TM+NA++AGG IVQ
Sbjct: 166 SSEC-DSNVDSEVSSHSL--HYQTVIPAGTIQIATQGEGVPGLHTLTMSNAATAGGAIVQ 222

Query: 148 YS--QDGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+  QD QFFVP+  G G   ED +RKRE+RLLKNR+AA+ECRRKKKEYIKCLENRVAIL
Sbjct: 223 YAQGQDTQFFVPAYTGHGVVVEDAARKRELRLLKNRQAARECRRKKKEYIKCLENRVAIL 282

Query: 203 ENQNKALIDELKSLKEL 219
           EN+N+ LI+ELKSLK+L
Sbjct: 283 ENRNQTLIEELKSLKQL 299

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791029|ref|XP_623346.2| PREDICTED: cyclic AMP-responsive element-binding protein 1 [Apis mellifera] gi|380019369|ref|XP_003693581.1| PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform 2 [Apis florea] gi|22205100|emb|CAD23075.1| CREB 5 protein [Apis mellifera carnica]

 Score =  223 bits (568), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 151/197 (76%), Gaps = 13/197 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+  SDDS S  D++    +R  I LTRRPSY+KILNDL G EI  G++    S
Sbjct: 109 LQTLQVVETGSDDSFS--DSEESPEQRGGI-LTRRPSYKKILNDLGGGEITDGRLPPLES 165

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
            S+C DSN+DSE+SSHSL  HYQTVIPAG I +++QG     L T+TM+NA++AGG IVQ
Sbjct: 166 SSEC-DSNVDSEVSSHSL--HYQTVIPAGTIQIATQGEGVPGLHTLTMSNAATAGGAIVQ 222

Query: 148 YS--QDGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+  QD QFFVP+  G G   ED +RKRE+RLLKNR+AA+ECRRKKKEYIKCLENRVAIL
Sbjct: 223 YAQGQDTQFFVPAYTGHGVVVEDAARKRELRLLKNRQAARECRRKKKEYIKCLENRVAIL 282

Query: 203 ENQNKALIDELKSLKEL 219
           EN+N+ LI+ELKSLK+L
Sbjct: 283 ENRNQTLIEELKSLKQL 299

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853128|ref|XP_003702075.1| PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform 2 [Megachile rotundata]

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 150/197 (76%), Gaps = 13/197 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVE--SS 87
           L + QVV+  SDDS S  D++    +R  I LTRRPSY+KILNDL G EI  G++    S
Sbjct: 110 LQTLQVVETGSDDSFS--DSEESPEQRGGI-LTRRPSYKKILNDLGGGEITDGRLPPLES 166

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
            S+C DSN+DSE+SSHSL  HYQTVIPAG I +++QG     L T+TM+N ++AGG IVQ
Sbjct: 167 SSEC-DSNVDSEVSSHSL--HYQTVIPAGTIQIATQGEGVPGLHTLTMSNPATAGGAIVQ 223

Query: 148 YS--QDGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+  QD QFFVP+  G G   ED +RKRE+RLLKNREAA+ECRRKKKEYIKCLENRVAIL
Sbjct: 224 YAQGQDTQFFVPAYTGHGVVVEDAARKRELRLLKNREAARECRRKKKEYIKCLENRVAIL 283

Query: 203 ENQNKALIDELKSLKEL 219
           EN+N+ LI+ELKSLK+L
Sbjct: 284 ENRNQTLIEELKSLKQL 300

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853130|ref|XP_003702076.1| PREDICTED: cyclic AMP-responsive element-binding protein 1-like isoform 3 [Megachile rotundata]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 123/197 (62%), Positives = 150/197 (76%), Gaps = 13/197 (6%)

Query: 30  LSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVES--S 87
           L + QVV+  SDDS S  D++    +R  I LTRRPSY+KILNDL G EI  G++    S
Sbjct: 77  LQTLQVVETGSDDSFS--DSEESPEQRGGI-LTRRPSYKKILNDLGGGEITDGRLPPLES 133

Query: 88  GSDCDDSNLDSELSSHSLPTHYQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQ 147
            S+C DSN+DSE+SSHSL  HYQTVIPAG I +++QG     L T+TM+N ++AGG IVQ
Sbjct: 134 SSEC-DSNVDSEVSSHSL--HYQTVIPAGTIQIATQGEGVPGLHTLTMSNPATAGGAIVQ 190

Query: 148 YS--QDGQFFVPSEIGTG---EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAIL 202
           Y+  QD QFFVP+  G G   ED +RKRE+RLLKNREAA+ECRRKKKEYIKCLENRVAIL
Sbjct: 191 YAQGQDTQFFVPAYTGHGVVVEDAARKRELRLLKNREAARECRRKKKEYIKCLENRVAIL 250

Query: 203 ENQNKALIDELKSLKEL 219
           EN+N+ LI+ELKSLK+L
Sbjct: 251 ENRNQTLIEELKSLKQL 267

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
UNIPROTKB|J9P6E3	285	CREM "cAMP-responsive element	0.845	0.670	0.360	1.1e-23
UNIPROTKB|E9PSX1	294	Crem "cAMP-responsive element	0.858	0.659	0.355	2.9e-23
UNIPROTKB|D4A726	264	Crem "cAMP-responsive element	0.836	0.715	0.367	3.8e-23
UNIPROTKB|C9IYZ7	269	CREM "cAMP-responsive element	0.845	0.710	0.360	4.8e-23
UNIPROTKB|C9JK96	285	CREM "cAMP-responsive element	0.845	0.670	0.360	4.8e-23
UNIPROTKB|A8MPQ2	236	CREM "cAMP-responsive element	0.787	0.754	0.366	1.6e-22
UNIPROTKB|J9NWM2	193	CREB1 "Uncharacterized protein	0.774	0.906	0.362	2.6e-22
FB|FBgn0014467	359	CrebB-17A "Cyclic-AMP response	0.274	0.172	0.645	1.5e-21
UNIPROTKB|J3KR46	219	CREM "cAMP-responsive element	0.889	0.917	0.316	1.5e-19
UNIPROTKB|C9JAW9	270	CREM "cAMP-responsive element	0.853	0.714	0.331	4e-19

UNIPROTKB|J9P6E3 CREM "cAMP-responsive element modulator" [Canis lupus familiaris (taxid:9615)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 74/205 (36%), Positives = 106/205 (51%)

Query:    20 QPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEI 79
             QP + QS   + + QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L     
Sbjct:    92 QPSVIQS-PQIQTVQVATIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSSDVP 149

Query:    80 ATGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNA 138
                K+E   S+  +      +++ ++PT  YQT    G    +   GD  T      T A
Sbjct:   150 GVPKIEEEKSE--EEGTPPNIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTTA 202

Query:   139 SSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENR 198
                G  +V  +  G    P ++   E+ +RKRE+RL+               Y+KCLENR
Sbjct:   203 LPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYVKCLENR 258

Query:   199 VAILENQNKALIDELKSLKELYCQQ 223
             VA+LENQNK LI+ELK+LK+LYC +
Sbjct:   259 VAVLENQNKTLIEELKALKDLYCHK 283

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|E9PSX1 Crem "cAMP-responsive element modulator" [Rattus norvegicus (taxid:10116)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 75/211 (35%), Positives = 108/211 (51%)

Query:    21 PELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIA 80
             P + QS   + + QV   A  D  SA+   +   KRR+I L+RRPSYRKILN+L      
Sbjct:    91 PSVIQS-PQIQTVQVATIAETDD-SADSEVIDSHKRREI-LSRRPSYRKILNELSSDVPG 147

Query:    81 TGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVI-------PAGHIHLSSQGGDHQTLPT 132
               K+E   S+  +      +++ ++PT  YQT              H+++  GD  T   
Sbjct:   148 IPKIEEEKSE--EEGTPPNIATMAVPTSIYQTSTGQYNEETDLAPSHMAAATGDMPTYQI 205

Query:   133 ITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYI 192
                T A   G  +V  +  G    P ++   E+ +RKRE+RL+               Y+
Sbjct:   206 RAPTTALPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYV 261

Query:   193 KCLENRVAILENQNKALIDELKSLKELYCQQ 223
             KCLENRVA+LENQNK LI+ELK+LK+LYC +
Sbjct:   262 KCLENRVAVLENQNKTLIEELKALKDLYCHK 292

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|D4A726 Crem "cAMP-responsive element modulator" [Rattus norvegicus (taxid:10116)]

 Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
 Identities = 75/204 (36%), Positives = 106/204 (51%)

Query:    21 PELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIA 80
             P + QS   + + QV   A  D  SA+   +   KRR+I L+RRPSYRKILN+L      
Sbjct:    73 PSVIQS-PQIQTVQVATIAETDD-SADSEVIDSHKRREI-LSRRPSYRKILNELSSDVPG 129

Query:    81 TGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNAS 139
               K+E   S+  +      +++ ++PT  YQT    G    +   GD  T      T A 
Sbjct:   130 IPKIEEEKSE--EEGTPPNIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTTAL 182

Query:   140 SAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENRV 199
               G  +V  +  G    P ++   E+ +RKRE+RL+               Y+KCLENRV
Sbjct:   183 PQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYVKCLENRV 238

Query:   200 AILENQNKALIDELKSLKELYCQQ 223
             A+LENQNK LI+ELK+LK+LYC +
Sbjct:   239 AVLENQNKTLIEELKALKDLYCHK 262

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|C9IYZ7 CREM "cAMP-responsive element modulator" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 74/205 (36%), Positives = 107/205 (52%)

Query:    20 QPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEI 79
             QP + QS + + + QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L     
Sbjct:    76 QPWVIQS-SEIHTVQVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSSDVP 133

Query:    80 ATGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNA 138
                K+E   S+  +      +++ ++PT  YQT    G    +   GD  T      T A
Sbjct:   134 GVPKIEEERSE--EEGTPPSIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTAA 186

Query:   139 SSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENR 198
                G  +V  +  G    P ++   E+ +RKRE+RL+               Y+KCLENR
Sbjct:   187 LPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYVKCLENR 242

Query:   199 VAILENQNKALIDELKSLKELYCQQ 223
             VA+LENQNK LI+ELK+LK+LYC +
Sbjct:   243 VAVLENQNKTLIEELKALKDLYCHK 267

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|C9JK96 CREM "cAMP-responsive element modulator" [Homo sapiens (taxid:9606)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 74/205 (36%), Positives = 107/205 (52%)

Query:    20 QPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEI 79
             QP + QS + + + QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L     
Sbjct:    92 QPWVIQS-SEIHTVQVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSSDVP 149

Query:    80 ATGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNA 138
                K+E   S+  +      +++ ++PT  YQT    G    +   GD  T      T A
Sbjct:   150 GVPKIEEERSE--EEGTPPSIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTAA 202

Query:   139 SSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENR 198
                G  +V  +  G    P ++   E+ +RKRE+RL+               Y+KCLENR
Sbjct:   203 LPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYVKCLENR 258

Query:   199 VAILENQNKALIDELKSLKELYCQQ 223
             VA+LENQNK LI+ELK+LK+LYC +
Sbjct:   259 VAVLENQNKTLIEELKALKDLYCHK 283

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|A8MPQ2 CREM "cAMP-responsive element modulator" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 70/191 (36%), Positives = 99/191 (51%)

Query:    34 QVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDD 93
             QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L        K+E   S+  +
Sbjct:    56 QVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSSDVPGVPKIEEERSE--E 112

Query:    94 SNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQDG 152
                   +++ ++PT  YQT    G    +   GD  T      T A   G  +V  +  G
Sbjct:   113 EGTPPSIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTAALPQG--VVMAASPG 165

Query:   153 QFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENRVAILENQNKALIDE 212
                 P ++   E+ +RKRE+RL+               Y+KCLENRVA+LENQNK LI+E
Sbjct:   166 SLHSPQQLA--EEATRKRELRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIEE 223

Query:   213 LKSLKELYCQQ 223
             LK+LK+LYC +
Sbjct:   224 LKALKDLYCHK 234

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|J9NWM2 CREB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 70/193 (36%), Positives = 108/193 (55%)

Query:    40 SDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVESSGSDCDDSNLDSE 99
             S+DS  + D+     KRR+I L+RRPSYRKILNDL        ++E   S+ ++++  + 
Sbjct:     8 SEDSQESVDSVTDSQKRREI-LSRRPSYRKILNDLSSDAPGVPRIEEEKSE-EETSAPA- 64

Query:   100 LSSHSLPTH-YQT-----VIPAGH---IHLSSQGGDHQTLPTITMTNASSAGGTIVQYSQ 150
             +++ ++PT  YQT     +  +      H  +  GD QT    T   ++ A G ++  S 
Sbjct:    65 ITTVTVPTPIYQTSSGQYIYKSREEKKSHFLTASGDVQTYQIRTAPTSTIAPGVVMASSP 124

Query:   151 DGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENRVAILENQNKALI 210
                  +P++    E+ +RKRE+RL+               Y+KCLENRVA+LENQNK LI
Sbjct:   125 A----LPTQ--PAEEAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLI 178

Query:   211 DELKSLKELYCQQ 223
             +ELK+LK+LYC +
Sbjct:   179 EELKALKDLYCHK 191

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

FB|FBgn0014467 CrebB-17A "Cyclic-AMP response element binding protein B at 17A" [Drosophila melanogaster (taxid:7227)]

 Score = 194 (73.4 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 40/62 (64%), Positives = 44/62 (70%)

Query:   161 GTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENRVAILENQNKALIDELKSLKELY 220
             G  EDQ+RKRE+RL                YIKCLENRVA+LENQNKALI+ELKSLKELY
Sbjct:   294 GIAEDQTRKREIRLQKNREAARECRRKKKEYIKCLENRVAVLENQNKALIEELKSLKELY 353

Query:   221 CQ 222
             CQ
Sbjct:   354 CQ 355

GO:0005634 "nucleus" evidence=NAS;IMP

GO:0003677 "DNA binding" evidence=NAS;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0007611 "learning or memory" evidence=NAS

GO:0045475 "locomotor rhythm" evidence=NAS

GO:0007622 "rhythmic behavior" evidence=TAS

GO:0046983 "protein dimerization activity" evidence=ISS

GO:0045187 "regulation of circadian sleep/wake cycle, sleep" evidence=TAS

GO:0007623 "circadian rhythm" evidence=TAS

GO:0007616 "long-term memory" evidence=IDA;IMP;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0072375 "medium-term memory" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0007528 "neuromuscular junction development" evidence=IMP

UNIPROTKB|J3KR46 CREM "cAMP-responsive element modulator" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 69/218 (31%), Positives = 109/218 (50%)

Query:    18 CSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRS-KRRDITLTRRPSYRKILNDLRG 76
             C +  +++ Y+     + V   ++   SAE   V  S KRR+I L+RRPSYRKILN+L  
Sbjct:     9 CFRRPIEEDYSSGDVEEKVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSS 67

Query:    77 AEIATGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVI-------PAGHIHLSSQGGDHQ 128
                   K+E   S+  +      +++ ++PT  YQT              H+++  GD  
Sbjct:    68 DVPGVPKIEEERSE--EEGTPPSIATMAVPTSIYQTSTGQYNEETELAPSHMAAATGDMP 125

Query:   129 TLPTITMTNASSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXX 188
             T      T A   G  +V  +  G    P ++   E+ +RKRE+RL+             
Sbjct:   126 TYQIRAPTAALPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAAKECRRRK 181

Query:   189 XXYIKCLENRVAILENQNKALIDELKSLKELYCQQEME 226
               Y+KCLE+RVA+LE QNK LI+EL++LK++ C  + +
Sbjct:   182 KEYVKCLESRVAVLEVQNKKLIEELETLKDI-CSPKTD 218

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|C9JAW9 CREM "cAMP-responsive element modulator" [Homo sapiens (taxid:9606)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 69/208 (33%), Positives = 106/208 (50%)

Query:    20 QPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRPSYRKILNDLRGAEI 79
             QP + QS + + + QV   A  D  +  +  +   KRR+I L+RRPSYRKILN+L     
Sbjct:    76 QPWVIQS-SEIHTVQVAAIAETDESAESEGVIDSHKRREI-LSRRPSYRKILNELSSDVP 133

Query:    80 ATGKVESSGSDCDDSNLDSELSSHSLPTH-YQTVIPAGHIHLSSQGGDHQTLPTITMTNA 138
                K+E   S+  +      +++ ++PT  YQT    G    +   GD  T      T A
Sbjct:   134 GVPKIEEERSE--EEGTPPSIATMAVPTSIYQT--STGQYTAT---GDMPTYQIRAPTAA 186

Query:   139 SSAGGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLXXXXXXXXXXXXXXXYIKCLENR 198
                G  +V  +  G    P ++   E+ +RKRE+RL+               Y+KCLE+R
Sbjct:   187 LPQG--VVMAASPGSLHSPQQLA--EEATRKRELRLMKNREAAKECRRRKKEYVKCLESR 242

Query:   199 VAILENQNKALIDELKSLKELYCQQEME 226
             VA+LE QNK LI+EL++LK++ C  + +
Sbjct:   243 VAVLEVQNKKLIEELETLKDI-CSPKTD 269

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P27925	CREB1_BOVIN	No assigned EC number	0.4124	0.8982	0.6246	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	226
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	5e-18
smart00338	65	smart00338, BRLZ, basic region leucin zipper	4e-12
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	2e-10
pfam02173	41	pfam02173, pKID, pKID domain	1e-06
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-06

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 74.7 bits (184), Expect = 5e-18
 Identities = 28/62 (45%), Positives = 39/62 (62%)

Query: 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224
           ++  KRE R  KNREAA+  R +KK YI+ LE +V  LE +NK L  EL+ LK+   + +
Sbjct: 1   EKELKRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLK 60

Query: 225 ME 226
            E
Sbjct: 61  SE 62

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 59.1 bits (144), Expect = 4e-12
 Identities = 21/52 (40%), Positives = 31/52 (59%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELY 220
           KR  R  +NREAA+  R +KK  I+ LE +V  LE +N+ L  E++ L+   
Sbjct: 5   KRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRREL 56

Length = 65

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 54.2 bits (131), Expect = 2e-10
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYC 221
            R  +  +NREAA+  R +K E +K LE++V  L ++N  L DE+  LK+   
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKKALA 54

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

>gnl|CDD|145367 pfam02173, pKID, pKID domain

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 19/32 (59%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 55 KRRDITLTRRPSYRKILNDLRGAEIATGKVES 86
          KRR+I L+RRPSYRKILNDL G +    K   
Sbjct: 11 KRREI-LSRRPSYRKILNDLSGEDTVGPKGAD 41

CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB. Length = 41

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 43.0 bits (102), Expect = 2e-06
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLK 217
           +   R  +N EAA+  R KKK+  + LE RV  LE +N  L  +++ L+
Sbjct: 4   EYRDRRRRNNEAARRSREKKKQREEELEERVKELEEENAQLRQKVEQLE 52

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG3584|consensus	348		100.0
PF02173	41	pKID: pKID domain; InterPro: IPR003102 The nuclear	99.68
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.46
smart00338	65	BRLZ basic region leucin zipper.	99.44
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.18
KOG4343|consensus	655		99.06
KOG0709|consensus	472		99.01
KOG4005|consensus	292		98.9
KOG0837|consensus	279		98.76
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.41
KOG3119|consensus	269		98.14
KOG4571|consensus	294		98.03
KOG3863|consensus	604		97.63
KOG4196|consensus	135		97.1
KOG1414|consensus	395		97.07
KOG1414|consensus	395		95.72
KOG3584|consensus	348		92.02
KOG3119|consensus	269		87.25
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.52
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.05

>KOG3584|consensus

Probab=100.00  E-value=1.1e-53  Score=386.09  Aligned_cols=217  Identities=45%  Similarity=0.699  Sum_probs=189.6

Q ss_pred             ceeeeecce------EEEeccCeeecCCCceeeEE--Eee-ccCCCCCcccccccccccccccccccCchHHHHh-hhcc
Q psy1987           6 PLLVYPFDA------TLYCSQPELDQSYTYLSSRQ--VVD-GASDDSLSAEDNDVKRSKRRDITLTRRPSYRKIL-NDLR   75 (226)
Q Consensus         6 ~~~~~p~~~------~~~~~~p~i~~~~~~iqtvQ--v~~-~~sdds~~~~d~~~~~~k~r~~iLsRRPSYRKIl-nels   75 (226)
                      -|++||.|+      ||..++|++|+++ ++|+||  |.. +++++|+++.|.+-.++ +|++||+||||||||| |+|+
T Consensus        56 tl~~lptg~t~~~qgv~~tp~~~viqsp-q~~~v~~qvs~~~~~~~sq~Ss~ri~~Sq-~~~~ila~rpsy~~~l~~~i~  133 (348)
T KOG3584|consen   56 TLVQLPTGQTVMVQGVIQTPQSSVIQSP-QTQTVQRQVSPIAESEESQESSDRILDSQ-KRREILARRPSYRKILGNDIS  133 (348)
T ss_pred             EeecCCCcceeeecccccCCcchhhcch-hhhhhhcccCCCCCChhhhcccccccccc-cchhhhccCchhccccccccc
Confidence            378999999      6677888899987 699997  755 69999999988666555 5555699999999999 9999


Q ss_pred             ccccccCccccCCCCCCCCCCCCccccCCCCc------------ceeeecCCCcccccCCC-CCCCccceecccCC---C
Q psy1987          76 GAEIATGKVESSGSDCDDSNLDSELSSHSLPT------------HYQTVIPAGHIHLSSQG-GDHQTLPTITMTNA---S  139 (226)
Q Consensus        76 s~~~~~~~~~e~~~~~~~~~~~~~~~~~~~p~------------~y~~i~p~g~~ql~~~g-~g~qgl~~lt~~~~---~  139 (226)
                      |+.+++.++++++.|+  +....+|++|++|+            +|++|.++|+|+++++| +|+||+++|||+|+   .
T Consensus       134 S~~p~v~~~~~~~~e~--~~~~~ai~~~s~P~~~i~~~tS~G~~qqi~i~~gg~~~~~~pgs~gvqglq~~~~T~S~~s~  211 (348)
T KOG3584|consen  134 SDAPGVTRIEEENGEE--ETFSAAIATVSVPTGSIGYQTSSGGPQQIAIAQGGTIQLANPGSDGVQGLQTLTMTNSGPST  211 (348)
T ss_pred             ccCCCCCccccccccc--cccchhheeeecCCCcceeeecCCCceeeeecCCCccccCCCCCCccccccccCcccCCCCC
Confidence            9999999999988776  33456888999987            57789999999999999 99999999999994   4


Q ss_pred             CCCCceeeec---CCC--ccccCCC---------------------------------------------CCCCccHHHH
Q psy1987         140 SAGGTIVQYS---QDG--QFFVPSE---------------------------------------------IGTGEDQSRK  169 (226)
Q Consensus       140 ~~g~tivq~a---~dg--q~~vp~~---------------------------------------------~~~~ee~e~K  169 (226)
                      ++|.+|+||.   .||  +|++|.+                                             ++..||..+|
T Consensus       212 Q~~~t~Lq~~a~~~~~~~qi~~p~~qv~~~q~atgd~qs~~i~tg~sssps~tl~pg~~~~~~~~~ltsp~~~aee~trK  291 (348)
T KOG3584|consen  212 QQGTTILQYTAQTIDGAQQILVPSNQVVVPQAATGDMQSYQIRTGYSSSPSATLTPGVVMMGSPSYLTSPTQGAEEATRK  291 (348)
T ss_pred             CCceeeEeecccccccceeeeccccceeecccccCcccchhhcccccCCCccccCCceEEecCcccccCCCccchhhhhH
Confidence            6899999995   577  6888875                                             0235888999


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy1987         170 REMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEME  226 (226)
Q Consensus       170 rerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~~  226 (226)
                      |+.||+|||+||++||+|||||++|||++|+.||++|+.|++||+.||++|||++.+
T Consensus       292 RevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc~k~~d  348 (348)
T KOG3584|consen  292 REVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYCHKSKD  348 (348)
T ss_pred             HHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhhcccCC
Confidence            999999999999999999999999999999999999999999999999999999864

>PF02173 pKID: pKID domain; InterPro: IPR003102 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner

Probab=99.68  E-value=2.5e-18  Score=115.67  Aligned_cols=36  Identities=44%  Similarity=0.651  Sum_probs=21.2

Q ss_pred             ccccccccccccccCchHHHHhhhccccccccCcccc
Q psy1987          50 DVKRSKRRDITLTRRPSYRKILNDLRGAEIATGKVES   86 (226)
Q Consensus        50 ~~~~~k~r~~iLsRRPSYRKIlnelss~~~~~~~~~e   86 (226)
                      +.+++ ||++||+||||||||||||||++++.++++|
T Consensus         6 ~~~~~-krReiLsRRPSYRKIlndLs~~~~~~~k~~e   41 (41)
T PF02173_consen    6 EEDSQ-KRREILSRRPSYRKILNDLSSEDTGIPKGEE   41 (41)
T ss_dssp             --HHH-HHHHHHTTSTHHHHHHHHHHHH---------
T ss_pred             ccchH-HHHHHHhhCchHHHHHHHhcccccccCcCCC
Confidence            34444 5555699999999999999999999887653

CBP and P300 bind to the pKID (phosphorylated kinase-inducible-domain) domain of CREB [].; GO: 0005515 protein binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1KDX_B.

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.46  E-value=2.2e-13  Score=97.72  Aligned_cols=61  Identities=41%  Similarity=0.562  Sum_probs=55.2

Q ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      ++..++.+|+++||+||++||.|||.|+.+||.++..|+.+|..|..++..|+.++..|+.
T Consensus         1 e~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~   61 (64)
T PF00170_consen    1 EKEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKS   61 (64)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999999999999999999999999999998874

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>smart00338 BRLZ basic region leucin zipper

Probab=99.44  E-value=5e-13  Score=95.99  Aligned_cols=59  Identities=36%  Similarity=0.453  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         167 SRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +.|+.+|+++||+||++||.||+.|+..||.++..|+.+|..|..++..|+.++..|++
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~   61 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS   61 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999998875

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.18  E-value=1.6e-10  Score=80.77  Aligned_cols=51  Identities=41%  Similarity=0.532  Sum_probs=46.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         168 RKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKEL  219 (226)
Q Consensus       168 ~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~  219 (226)
                      .++.+|. |||+||++||.|||+++..|+.++..|+.+|..|..++..|+.+
T Consensus         4 ~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    4 EKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4556666 99999999999999999999999999999999999999999864

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG4343|consensus

Probab=99.06  E-value=1.2e-09  Score=106.87  Aligned_cols=63  Identities=37%  Similarity=0.459  Sum_probs=58.7

Q ss_pred             CCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         162 TGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       162 ~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      .+|.+..||+.|++|||++|..+|+|||||+..||.++..|..||..|+.|+..||.++.-+.
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~  336 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELV  336 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence            468889999999999999999999999999999999999999999999999999999886553

>KOG0709|consensus

Probab=99.01  E-value=2.3e-10  Score=109.96  Aligned_cols=56  Identities=39%  Similarity=0.600  Sum_probs=44.4

Q ss_pred             CCCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         161 GTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSL  216 (226)
Q Consensus       161 ~~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~L  216 (226)
                      ++.||+..||.||++||+.+|+++|+|||+||++||.+|.....+|++|.+++..|
T Consensus       243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~L  298 (472)
T KOG0709|consen  243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEEL  298 (472)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHH
Confidence            45689999999999999999999999999999999999765444444444444333

>KOG4005|consensus

Probab=98.90  E-value=1.1e-08  Score=92.15  Aligned_cols=62  Identities=29%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             CCCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987         161 GTGEDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ  223 (226)
Q Consensus       161 ~~~ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql  223 (226)
                      .|+ ..++|-.||++|||+||+-+|.|||+++.+||..+..|+.+|..|..++..|++....|
T Consensus        62 ~HL-S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L  123 (292)
T KOG4005|consen   62 DHL-SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESL  123 (292)
T ss_pred             ccc-CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344 45678999999999999999999999999999999999999999999988888765543

>KOG0837|consensus

Probab=98.76  E-value=2e-08  Score=90.99  Aligned_cols=62  Identities=42%  Similarity=0.591  Sum_probs=55.9

Q ss_pred             ccHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSR-KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~-KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      ++++. |-+|.++|||+||.|||+||.++|..||.+|..|..+|..|-.++..|++++.++|+
T Consensus       200 e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~  262 (279)
T KOG0837|consen  200 EDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ  262 (279)
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            44444 455668999999999999999999999999999999999999999999999999886

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.41  E-value=8.4e-09  Score=79.21  Aligned_cols=60  Identities=30%  Similarity=0.397  Sum_probs=48.4

Q ss_pred             cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       165 e~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      -...|..||..|||.||+.||.||++.+..||.++..|..+...|..++..|+.+...++
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~~~lk   85 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQERDELK   85 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999999999998877766666666666665554443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3119|consensus

Probab=98.14  E-value=7e-06  Score=74.19  Aligned_cols=62  Identities=29%  Similarity=0.366  Sum_probs=56.7

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +.+..+...|+.||-+||++||.+.|....++..++..|+.||..|+.++..|+.++.+++.
T Consensus       189 ~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~  250 (269)
T KOG3119|consen  189 EKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRR  250 (269)
T ss_pred             hcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788899999999999999999999999999999999999999999999999988763

>KOG4571|consensus

Probab=98.03  E-value=2.1e-05  Score=72.42  Aligned_cols=62  Identities=23%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      ...+.+..|.+..|++||.+-|+|||...+.|+.+...|+..|.+|+.++..|..++.-+|+
T Consensus       222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKq  283 (294)
T KOG4571|consen  222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQ  283 (294)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666668899999999999999999999999999999999999999999999987774

>KOG3863|consensus

Probab=97.63  E-value=5.2e-05  Score=75.59  Aligned_cols=55  Identities=29%  Similarity=0.396  Sum_probs=45.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ  223 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql  223 (226)
                      +-.||+=|||+||+.||+||-+.|..||..+..|.++..+|+.|-..+...+..+
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~  544 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVM  544 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999999998888876655555444433

>KOG4196|consensus

Probab=97.10  E-value=0.0031  Score=52.54  Aligned_cols=58  Identities=31%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         167 SRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      .+|.+||-+|||=-|+-||-|+-..-.+||.+...|..+...|++++..++.++..++
T Consensus        51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k  108 (135)
T KOG4196|consen   51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYK  108 (135)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4688889999999999999999999999999888777777777777777776665554

>KOG1414|consensus

Probab=97.07  E-value=7.6e-05  Score=70.65  Aligned_cols=61  Identities=34%  Similarity=0.513  Sum_probs=53.2

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhh
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALI-DELKSLKELYCQQE  224 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~-~el~~Lk~~~~qlk  224 (226)
                      ++...++.+.++|||.||.+||+|||.|+..|+.+...+..+|..|. .++..|+..+.+++
T Consensus       280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~  341 (395)
T KOG1414|consen  280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLS  341 (395)
T ss_pred             CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhc
Confidence            44445558889999999999999999999999999999999999998 88888888877654

>KOG1414|consensus

Probab=95.72  E-value=0.00031  Score=66.53  Aligned_cols=62  Identities=27%  Similarity=0.355  Sum_probs=53.5

Q ss_pred             CccHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q psy1987         163 GEDQSRKREMRLLKNREAAKE---CRRKKKEYIKCLENRVAILE-NQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       163 ~ee~e~KrerRl~KNR~AA~k---cR~RKKeyi~~LE~~v~~Le-~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ..+.+.|+..|++||++||.+   ||.|++++...|+.+++.|+ ..|..|..++..|+++..++.
T Consensus       148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~  213 (395)
T KOG1414|consen  148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLE  213 (395)
T ss_pred             CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHH
Confidence            356678999999999999999   99999999999999999999 888888777777777666553

>KOG3584|consensus

Probab=92.02  E-value=1.1  Score=42.22  Aligned_cols=64  Identities=13%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             EEEeccCe----eecCCCceeeE--------EEeeccCCCCC-----cccccccccccccccccccCchHHHHhhhcccc
Q psy1987          15 TLYCSQPE----LDQSYTYLSSR--------QVVDGASDDSL-----SAEDNDVKRSKRRDITLTRRPSYRKILNDLRGA   77 (226)
Q Consensus        15 ~~~~~~p~----i~~~~~~iqtv--------Qv~~~~sdds~-----~~~d~~~~~~k~r~~iLsRRPSYRKIlnelss~   77 (226)
                      +.++++|-    +||+.|+-|-|        |.+.-.+|--+     ...-++++.++.+-| |.+||+|.+|+-+++..
T Consensus       156 i~~~s~P~~~i~~~tS~G~~qqi~i~~gg~~~~~~pgs~gvqglq~~~~T~S~~s~Q~~~t~-Lq~~a~~~~~~~qi~~p  234 (348)
T KOG3584|consen  156 IATVSVPTGSIGYQTSSGGPQQIAIAQGGTIQLANPGSDGVQGLQTLTMTNSGPSTQQGTTI-LQYTAQTIDGAQQILVP  234 (348)
T ss_pred             heeeecCCCcceeeecCCCceeeeecCCCccccCCCCCCccccccccCcccCCCCCCCceee-Eeecccccccceeeecc
Confidence            77888885    89999866554        32211122111     111123456777877 99999999999999866


Q ss_pred             cc
Q psy1987          78 EI   79 (226)
Q Consensus        78 ~~   79 (226)
                      ..
T Consensus       235 ~~  236 (348)
T KOG3584|consen  235 SN  236 (348)
T ss_pred             cc
Confidence            43

>KOG3119|consensus

Probab=87.25  E-value=3.9  Score=37.26  Aligned_cols=63  Identities=24%  Similarity=0.326  Sum_probs=50.5

Q ss_pred             CCccHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         162 TGEDQSRKREMR----LLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       162 ~~ee~e~KrerR----l~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ..+++.+.|++|    ..|-|.+++.--..-+.++..||.+.+.|..++.+|+.++..|+..+.++-
T Consensus       190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~  256 (269)
T KOG3119|consen  190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP  256 (269)
T ss_pred             cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            445555554444    557777777766888889999999999999999999999999999987653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.52  E-value=1.7  Score=32.51  Aligned_cols=35  Identities=31%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      +.+..|+.+++.|..+|..|.++...|+.+..+|+
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~   52 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLK   52 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            44555555566666665555555555555555554

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.05  E-value=5  Score=32.14  Aligned_cols=35  Identities=26%  Similarity=0.222  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ..+..|...+..|..+|..|+-|+..|++.+.++.
T Consensus        22 ~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen   22 EELEELKKQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777788888999999999999999887653

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
1dh3_A	55	Crystal Structure Of A Creb Bzip-Cre Complex Reveal		4e-08

>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The Basis For Creb Faimly Selective Dimerization And Dna Binding Length = 55

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/55 (50%), Positives = 36/55 (65%)
Query: 169 KREMRLLXXXXXXXXXXXXXXXYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223
           KRE+RL+               Y+K LENRVA+LENQNK LI+ELK+LK+LY  +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	1e-20
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	2e-14
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	2e-14
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	8e-12
2wt7_B	90	Transcription factor MAFB; transcription, transcri	5e-09
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	2e-08
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	3e-08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	4e-08
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	1e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	3e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 80.5 bits (199), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 50/55 (90%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223
           KRE+RL+KNREAA+E RRKKKEY+K LENRVA+LENQNK LI+ELK+LK+LY  +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK 55

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 17/50 (34%), Positives = 27/50 (54%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           KR   L +NR AA   R+K+K +++ LE +   L + N  L  E+  L+ 
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222
           K E + ++NR AA + R++K E I  LE +V  L+ QN  L      L+E   Q
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQ 54

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 57.9 bits (140), Expect = 8e-12
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ 222
           KR +R  +N+ AA +CR +++E    L+     LE++  AL  E+ +L +   +
Sbjct: 2   KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 51.1 bits (122), Expect = 5e-09
 Identities = 19/55 (34%), Positives = 26/55 (47%)

Query: 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           E    K++ R LKNR  A+ CR K+ +    LEN    L  Q + L  E+  L  
Sbjct: 22  EVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLAR 76

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           K+  ++ +N+ AA   R+KK+   + L      LE +N+AL +   SL +
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAK 51

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 18/60 (30%), Positives = 35/60 (58%)

Query: 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ 223
            + S    ++  +N EAA+  R +K + +K LE++V  L ++N  L +E+  LK+L  ++
Sbjct: 4   PESSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGER 63

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 19/55 (34%), Positives = 27/55 (49%)

Query: 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           E    K+  R LKNR  A  CR K+    + LE + A L+ + + L  E  S+K 
Sbjct: 32  EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKL 86

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 41.2 bits (96), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 30/62 (48%)

Query: 165 DQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE 224
                   R  +NR A +  R++K++++K LE +V  L+  + +   E   L++   Q E
Sbjct: 4   SDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE 63

Query: 225 ME 226
            E
Sbjct: 64  EE 65

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 12/55 (21%), Positives = 27/55 (49%)

Query: 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKE 218
           +  S + ++R  +N  A ++ R K K      +++V  L  +N+ L  +++ L  
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.1 bits (91), Expect = 8e-05
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 7/66 (10%)

Query: 164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKAL-------IDELKSL 216
           +  S + ++R  +N  A ++ R K K      +++V  L  +N+ L         EL +L
Sbjct: 10  DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69

Query: 217 KELYCQ 222
           + L+ Q
Sbjct: 70  RNLFKQ 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 37/264 (14%), Positives = 81/264 (30%), Gaps = 66/264 (25%)

Query: 6   PLLVYPFDATLYCSQPELDQSYTYLSSRQVVDGASDDSLSAEDNDVKRSKRRDITLTRRP 65
            +    F     C   + D   + LS  ++      D +    + V  + R   TL  + 
Sbjct: 23  SVFEDAFVDNFDCKDVQ-DMPKSILSKEEI------DHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 66  S--------------YRKILNDLRGAEIATGKVESSGSDCDDS--NLDSELSSHSLP--- 106
                          Y+ +++ ++  +     +     +  D   N +   + +++    
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 107 ------THYQTVIPAGHIHLSSQGG------------DHQTLPT-------ITMTNASSA 141
                      + PA ++ +    G             ++           + + N +S 
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195

Query: 142 GGTIVQYSQDGQFFVPSEIGTGEDQSRKREMRLLKNREAAKECRR--KKKEYIKCLENRV 199
             T+++  Q   + +     +  D S   ++R+        E RR  K K Y  CL    
Sbjct: 196 -ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYENCL---- 247

Query: 200 AILEN-QNKALIDELKSLKELYCQ 222
            +L N QN    +       L C+
Sbjct: 248 LVLLNVQNAKAWNAF----NLSCK 267

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.59
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.57
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.54
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.53
1kdx_B	28	CREB; complex (transcription activator/CO-activato	99.41
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.41
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.35
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	99.06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	99.02
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.71
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.63
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.51
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	97.69
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	96.79
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	96.56
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	96.45
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	96.16
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	95.88
3m48_A	33	General control protein GCN4; leucine zipper, synt	95.87
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	95.63
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	95.44
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	95.32
2bni_A	34	General control protein GCN4; four helix bundle, a	95.03
1uo4_A	34	General control protein GCN4; four helix bundle, c	94.89
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	94.69
2hy6_A	34	General control protein GCN4; protein design, para	94.67
2r2v_A	34	GCN4 leucine zipper; coiled coils, anti-parallel t	92.73
2lz1_A	90	Nuclear factor erythroid 2-related factor 2; struc	91.99
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	91.41
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	90.98
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	90.71
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	90.35
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	89.88
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	87.51
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	84.1
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	84.04
1fmh_A	33	General control protein GCN4; coiled coil, leucine	81.4
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	80.57

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.59  E-value=3.5e-15  Score=105.90  Aligned_cols=57  Identities=32%  Similarity=0.402  Sum_probs=55.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      ||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|++++.+|++
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~   57 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ   57 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999999999999999999999999999975

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.57  E-value=8.1e-15  Score=104.97  Aligned_cols=57  Identities=30%  Similarity=0.461  Sum_probs=55.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      |+.+|++|||+||++||+||++|+.+|+.++..|+.+|..|..++..|++++.+|+.
T Consensus         2 kr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~   58 (63)
T 2wt7_A            2 KRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999999999999999999999999999874

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.54  E-value=1.5e-14  Score=102.99  Aligned_cols=57  Identities=35%  Similarity=0.429  Sum_probs=54.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      |.++|++|||+||++||+|||+|+.+||.+|..|+.+|..|..++..|+.++.+|++
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~   57 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ   57 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568899999999999999999999999999999999999999999999999999985

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.53  E-value=1.1e-14  Score=102.21  Aligned_cols=55  Identities=75%  Similarity=1.100  Sum_probs=52.3

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ  223 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql  223 (226)
                      |+.+|+++||+||++||.||++|+++||.+|..|+.+|..|..++..|+++++++
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~~   55 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSHK   55 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5789999999999999999999999999999999999999999999999988763

>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}

Probab=99.41  E-value=1.1e-14  Score=89.96  Aligned_cols=26  Identities=58%  Similarity=0.842  Sum_probs=21.4

Q ss_pred             ccccccccccCchHHHHhhhcccccc
Q psy1987          54 SKRRDITLTRRPSYRKILNDLRGAEI   79 (226)
Q Consensus        54 ~k~r~~iLsRRPSYRKIlnelss~~~   79 (226)
                      .++|++||+||||||||||||||+++
T Consensus         3 ~~krr~iL~rrpSYrkIlndls~~~~   28 (28)
T 1kdx_B            3 SQKRREILSRRPSYRKILNDLSSDAP   28 (28)
T ss_dssp             HHHHHHHHTTSTHHHHHHHHHHHHCC
T ss_pred             hhhhhhhhhcCchHHHHHHhhccCCC
Confidence            34555569999999999999999864

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.41  E-value=3e-13  Score=97.28  Aligned_cols=57  Identities=32%  Similarity=0.405  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987         166 QSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQ  222 (226)
Q Consensus       166 ~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q  222 (226)
                      ...+.++++.|||+||++||.||++|+.+||.+|+.|+.+|..|..++..|++++++
T Consensus         6 ~~d~~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~~   62 (63)
T 2dgc_A            6 SSDPAALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVGE   62 (63)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             cccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566677889999999999999999999999999999999999999999999875

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.35  E-value=1.7e-12  Score=93.07  Aligned_cols=57  Identities=26%  Similarity=0.286  Sum_probs=49.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         169 KREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       169 KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      |+.++++|||+||++||+|||+++.+|+.++..|+.+|..|..++..|+.++..|++
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~   58 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD   58 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678889999999999999999999999999999999999999999999999999874

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=99.06  E-value=5.4e-10  Score=83.63  Aligned_cols=62  Identities=19%  Similarity=0.202  Sum_probs=57.6

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +....+...|+.||.+||++||.++|.+...++.++..|+.+|..|+.++..|+.++..|++
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~   71 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN   71 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55567788889999999999999999999999999999999999999999999999998874

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=99.02  E-value=9.3e-10  Score=83.91  Aligned_cols=62  Identities=19%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +.++.+...|+.||.+||++||.++|....+++.++..|+.+|..|+.++..|+.++..|+.
T Consensus        10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~   71 (87)
T 1hjb_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRN   71 (87)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55567788889999999999999999999999999999999999999999999999988763

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.71  E-value=2.9e-08  Score=72.95  Aligned_cols=54  Identities=28%  Similarity=0.361  Sum_probs=46.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         171 EMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       171 erRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      .+|+..||.|++.+|.||+.||.+||.+|..|+..|..|..++..|+..+..|.
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~   63 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLE   63 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567899999999999999999999999999998877777777777777666554

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.63  E-value=2.6e-09  Score=84.27  Aligned_cols=62  Identities=31%  Similarity=0.246  Sum_probs=50.8

Q ss_pred             ccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         164 EDQSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       164 ee~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +....|..||..|||.||+.||.||.+.+.+||.++..|..+...|..|+..|+.++..+|.
T Consensus        32 e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~~E~~~lk~   93 (107)
T 3a5t_A           32 EIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRS   93 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHHHTTTSSSS
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567999999999999999999999999999988887777777777777777666655543

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.51  E-value=5.5e-07  Score=69.09  Aligned_cols=59  Identities=31%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         166 QSRKREMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       166 ~e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ...|..||..|||.+|+.||.||.+....||.++..|..+...|+.++..+..+...+|
T Consensus        24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k   82 (90)
T 2wt7_B           24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYK   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999988887777777777777766665554

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=97.69  E-value=1.2e-05  Score=61.71  Aligned_cols=31  Identities=23%  Similarity=0.363  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy1987         167 SRKREMRLLKNREAAKECRRKKKEYIKCLEN  197 (226)
Q Consensus       167 e~KrerRl~KNR~AA~kcR~RKKeyi~~LE~  197 (226)
                      ..+..||+.|||+||++||+||.+.+++|+.
T Consensus        60 ~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           60 LIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            4578899999999999999999999888763

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=96.79  E-value=0.0062  Score=43.17  Aligned_cols=43  Identities=30%  Similarity=0.322  Sum_probs=35.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         171 EMRLLKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDEL  213 (226)
Q Consensus       171 erRl~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el  213 (226)
                      ++.+.|||+|+++||.|=|..++....-.+.-.+||..|+--+
T Consensus         3 e~kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~   45 (63)
T 2c9l_Y            3 EIKRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLL   45 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence            4567899999999999999999988887777788888776544

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=96.56  E-value=0.0042  Score=41.50  Aligned_cols=36  Identities=36%  Similarity=0.441  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         189 KEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      |.|+.+||.+++.|+..|.+|.+.+..|+++..-|.
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLR   37 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLR   37 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            689999999999999999999999999988876654

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=96.45  E-value=0.00011  Score=56.39  Aligned_cols=25  Identities=32%  Similarity=0.260  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy1987         167 SRKREMRLLKNREAAKECRRKKKEY  191 (226)
Q Consensus       167 e~KrerRl~KNR~AA~kcR~RKKey  191 (226)
                      -.+..||+-|||+||+.||+||.+.
T Consensus        64 lIrdiRRRgKNKvAAqnCRKRKld~   88 (91)
T 2kz5_A           64 LVRDIRRRGKNKVAAQNYRKRKLET   88 (91)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3578889999999999999999764

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=96.16  E-value=0.0075  Score=38.59  Aligned_cols=32  Identities=31%  Similarity=0.310  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      ++|..||.+|+.|-.+|..|..++..|++++.
T Consensus         1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            46899999999999999999999999999875

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=95.88  E-value=0.014  Score=37.79  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ++|..||.+|+.|-.+|..|..++..|++++..-|
T Consensus         1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~   35 (36)
T 1kd8_B            1 XKVKQLKAKVEELKSKLWHLKNKVARLKKKNAECK   35 (36)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            46889999999999999999999999999887543

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=95.87  E-value=0.0073  Score=38.47  Aligned_cols=31  Identities=32%  Similarity=0.322  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      +|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         1 RM~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            1 RMAQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            4678999999999999999999999999875

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=95.63  E-value=0.018  Score=36.84  Aligned_cols=32  Identities=9%  Similarity=0.120  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      ++|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            1 XRMXQIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999874

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=95.44  E-value=0.016  Score=37.49  Aligned_cols=33  Identities=24%  Similarity=0.257  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYCQ  222 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~q  222 (226)
                      ++|..||.+|+.|..+|..|..++..|++++..
T Consensus         1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A            1 XEVKQLEAEVEEIESEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            357899999999999999999999999998753

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=95.32  E-value=0.026  Score=35.84  Aligned_cols=31  Identities=16%  Similarity=0.290  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      +|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         1 RMnQLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            1 RMKXIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            3789999999999999999999999999874

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=95.03  E-value=0.022  Score=36.42  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      ++|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         1 eRMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~   32 (34)
T 2bni_A            1 XRMKQIEDKLEEILSKGHHICNELARIKKLLG   32 (34)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CchhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999998764

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=94.89  E-value=0.026  Score=36.10  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      +|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~LL~   32 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKKLLG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence            5789999999999999999999999998864

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=94.69  E-value=0.05  Score=34.56  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      +|..||.+|+.|-.+|..|..|+..|++++.
T Consensus         1 RMnQLEdKVEell~~~~~le~EV~Rl~~ll~   31 (33)
T 2wq1_A            1 RMKQLEDKIEENTSKIYHNTNEIARNTKLVG   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            3789999999999999999999999998864

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=94.67  E-value=0.046  Score=34.93  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      ++..||.+|+.|-.+|..|..++..|++++.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~   32 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKAVG   32 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999998874

>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1

Probab=92.73  E-value=0.19  Score=32.06  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      ++..||.+|+.|-++|..|..|+..|++++.
T Consensus         2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg   32 (34)
T 2r2v_A            2 KLKQVADKLEEVASKLYHNANELARVAKLLG   32 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999998874

>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=91.99  E-value=0.0031  Score=48.30  Aligned_cols=23  Identities=39%  Similarity=0.508  Sum_probs=20.3

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Q psy1987         168 RKREMRLLKNREAAKECRRKKKE  190 (226)
Q Consensus       168 ~KrerRl~KNR~AA~kcR~RKKe  190 (226)
                      .+..||+-|||+||+.||+||.+
T Consensus        65 IrdiRRRgKNkvAAqnCRKRKld   87 (90)
T 2lz1_A           65 IRDIRRRGKNKVAAQNCRKRKLE   87 (90)
T ss_dssp             HHHHHHHSCSCCCCCCCSCCCCS
T ss_pred             HHHHHHhhhhHHHHHHcchhhcc
Confidence            46788999999999999999865

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=91.41  E-value=0.81  Score=34.46  Aligned_cols=50  Identities=24%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      .|-|.+++.--.--...+.+|+.+...|..+...|..|+..|+.++.++.
T Consensus        28 rrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p   77 (87)
T 1hjb_A           28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence            35555554444555678899999999999999999999999999998764

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=90.98  E-value=0.52  Score=34.60  Aligned_cols=37  Identities=30%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy1987         187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQ  223 (226)
Q Consensus       187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~ql  223 (226)
                      +-.+||..|+.+...|..++..|+.++..|+..+.+|
T Consensus        44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~l   80 (80)
T 1nlw_A           44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEKL   80 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4569999999999999999999999999999988765

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=90.71  E-value=0.41  Score=32.16  Aligned_cols=31  Identities=39%  Similarity=0.439  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         191 YIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       191 yi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      .+..||++|+.|+++|..|+..+-.-++++.
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdlia   34 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIA   34 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHH
Confidence            4678999999999999999877655555444

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=90.35  E-value=0.66  Score=33.64  Aligned_cols=38  Identities=16%  Similarity=0.159  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      +--+||..|+.++..|+.+...|+.++..|+..+..|.
T Consensus        44 ~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~   81 (83)
T 1nkp_B           44 KATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34589999999999999999999999999999988764

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=89.88  E-value=0.66  Score=34.28  Aligned_cols=50  Identities=24%  Similarity=0.264  Sum_probs=39.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         175 LKNREAAKECRRKKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       175 ~KNR~AA~kcR~RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      .|-|.+++.--.--...+.+|+.+...|..+...|..++..|+.++.++.
T Consensus        28 krSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~p   77 (78)
T 1gu4_A           28 RKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP   77 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            35566655555566678999999999999999999999999999987764

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=87.51  E-value=1.4  Score=32.65  Aligned_cols=39  Identities=21%  Similarity=0.149  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy1987         187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQEM  225 (226)
Q Consensus       187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk~  225 (226)
                      +--+||..|+.+...|..+...|..+...|+..+.+|+.
T Consensus        49 ~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~   87 (88)
T 1nkp_A           49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG   87 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            456899999999999988888899999999988888763

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=84.10  E-value=1.3  Score=32.35  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         188 KKEYIKCLENRVAILENQNKALIDELKSLK  217 (226)
Q Consensus       188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk  217 (226)
                      --+||..|+.++..|+.+|..|+.+++..+
T Consensus        48 Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A           48 AIDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            347888888888888888888887776654

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=84.04  E-value=2.6  Score=28.04  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy1987         192 IKCLENRVAILENQNKALIDEL  213 (226)
Q Consensus       192 i~~LE~~v~~Le~eN~~L~~el  213 (226)
                      ..+||+++..|++||..|++-+
T Consensus        19 naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           19 NSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHh
Confidence            4566666666666666666544

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=81.40  E-value=2.9  Score=25.99  Aligned_cols=29  Identities=31%  Similarity=0.323  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         192 IKCLENRVAILENQNKALIDELKSLKELY  220 (226)
Q Consensus       192 i~~LE~~v~~Le~eN~~L~~el~~Lk~~~  220 (226)
                      +..||.+|+..+.+|-+|.+++..|..++
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            56789999999999999999998887664

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=80.57  E-value=2.2  Score=30.82  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         190 EYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       190 eyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      ..+..|+.....|..+|..|+.++..|..++..|+
T Consensus        36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr   70 (70)
T 1gd2_E           36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK   70 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            34678898899999999999999999999988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	96.73
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	88.7
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	84.15
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	81.9
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	81.86
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	80.05

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.73  E-value=0.00026  Score=50.71  Aligned_cols=27  Identities=26%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy1987         168 RKREMRLLKNREAAKECRRKKKEYIKC  194 (226)
Q Consensus       168 ~KrerRl~KNR~AA~kcR~RKKeyi~~  194 (226)
                      .+..||+=|||+||+.||+||.+..+.
T Consensus        47 irDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          47 IRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            467889999999999999999876543

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=0.51  Score=32.72  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      +-.+||..|+.++..|..+...|..++..|+..+.+|.
T Consensus        49 ~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   86 (88)
T d1nkpa_          49 KATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG   86 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34689999999999999999999999999999988874

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.15  E-value=0.92  Score=31.00  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1987         188 KKEYIKCLENRVAILENQNKALIDELKSLKELYCQQE  224 (226)
Q Consensus       188 KKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~qlk  224 (226)
                      --+||..|+.+...|..++..|..++..|+.++.+|.
T Consensus        45 A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~   81 (83)
T d1nkpb_          45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG   81 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3479999999999999999999999999999988764

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.90  E-value=0.87  Score=29.78  Aligned_cols=26  Identities=27%  Similarity=0.259  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         189 KEYIKCLENRVAILENQNKALIDELK  214 (226)
Q Consensus       189 Keyi~~LE~~v~~Le~eN~~L~~el~  214 (226)
                      -+||..|+.++..|+.+|..|+.++.
T Consensus        32 i~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_          32 IDYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999988887764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.86  E-value=1.7  Score=29.35  Aligned_cols=35  Identities=31%  Similarity=0.164  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         187 KKKEYIKCLENRVAILENQNKALIDELKSLKELYC  221 (226)
Q Consensus       187 RKKeyi~~LE~~v~~Le~eN~~L~~el~~Lk~~~~  221 (226)
                      +-.+||..|+.++..|..++..|..++..|+..+.
T Consensus        44 ~A~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34689999999999999999999999999887653

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.05  E-value=1.1  Score=30.65  Aligned_cols=29  Identities=24%  Similarity=0.370  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1987         189 KEYIKCLENRVAILENQNKALIDELKSLK  217 (226)
Q Consensus       189 Keyi~~LE~~v~~Le~eN~~L~~el~~Lk  217 (226)
                      -+||..|+.++..|..+|..|+.++..++
T Consensus        49 ~~yI~~L~~~~~~L~~e~~~lk~~~~~~~   77 (80)
T d1am9a_          49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            45666666666666666666666655544