Psyllid ID: psy198

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFPIPVL
Secondary Structure (PSIPRED)
ccEEEEccEEEEEEEcccccccccccEEcccccHHHHHHHHHHHHccccEEEccccHHHHccccccHHHHHHHHHHcccccccccEEEEcccccccccccccHHHHHHHHHcccccEEEEEcccccccccccccccEEEEEccccHHHHHHHHHccccEEccccccccccccccHHHHHcccccccEEEEccccccccccccEEEEcccccccEEEcccccHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHHHHHHHHEEccccccEEEEEEcccccHHHHHHHHHHHHcccEEEccccEEEccccccccHHHHHHHHHHccccccccEEEEEccHHHHHHHHcccHHHHHHHHHcccccEEEEEEccccccccEcccccEEEEEccccHHHHHHHHHccccEEccccccccccccccHHHHHHccccEEEEEEccccccEEEEEEEEEEccccccEEEccccccHHHHHHHHccEEEccccccccccc
Coil and Loop (DISEMBL)
mrlrlhsfFTLGLFYhnaialpskmcsivkvTDPKAALLAAQCLKKgcvvalptdtlyglacdatnSKAINILYEIkkrdvnkplAICVSEitdipkwadtHTVSFELLAellpgpvtivfnrsehlnlelnpnvtkvavripDHKFLRQLLKLmdsplaltsanesnepstlCINEFQKLWSQLSVVidggiisnperfgstivdlseenVYSIVRKGVCYDKILKILHKYHLvekntfpipvl
Flexible Loop (DISEMBL)
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEikkrdvnkpLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKyhlvekntfpipvl
Low Complexity Region (SEG)
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPkaallaaqclkkGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFPIPVL
Disordered region (IsUnstruct)
***RLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL**********TLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFP****
Disordered Region (DISOPRED)
********F****************CSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHL*******IPVL
Disordered Region (DISEMBL)
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFPIPVL
Disordered Region (DISPRO)
*RLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEK********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRLRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKNTFPIPVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
Q499R4	280	YrdC domain-containing pr	yes	N/A	0.779	0.682	0.482	1e-46
Q0VC80	276	YrdC domain-containing pr	yes	N/A	0.779	0.692	0.479	6e-43
Q86U90	279	YrdC domain-containing pr	yes	N/A	0.779	0.684	0.492	2e-42
Q3U5F4	280	YrdC domain-containing pr	yes	N/A	0.779	0.682	0.487	2e-41
Q60369	207	Uncharacterized protein M	yes	N/A	0.563	0.666	0.353	7e-19
Q0VTD8	182	tRNA threonylcarbamoylade	yes	N/A	0.689	0.928	0.338	8e-19
Q1QTJ8	185	tRNA threonylcarbamoylade	yes	N/A	0.669	0.886	0.304	3e-16
Q9KVT5	188	tRNA threonylcarbamoylade	no	N/A	0.714	0.930	0.298	4e-16
A5F4C5	188	tRNA threonylcarbamoylade	no	N/A	0.714	0.930	0.298	4e-16
Q7MGL3	186	tRNA threonylcarbamoylade	no	N/A	0.620	0.817	0.339	2e-15

>sp|Q499R4|YRDC_RAT YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 126/197 (63%), Gaps = 6/197 (3%)

Query: 44  LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
           L+ G VVA+PTDTLYGLAC A+ S A++ +Y +K R   KPLA+C+  + D+ ++     
Sbjct: 78  LRAGAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136

Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
           V  ELL +L PGPVT+V  RSE LN +LNP    V +RIPDH F+  L ++   PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTS 196

Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE----RFGSTIVDLSEENVYSIVRKG 219
           AN S++ S+L + EFQ LW  LS+VIDGG I + E    R GST+VDLS    + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSG 256

Query: 220 VCYDKILKILH-KYHLV 235
              +    IL  KY L+
Sbjct: 257 CALENTTAILQGKYGLL 273

May regulate the activity of some transporters.
Rattus norvegicus (taxid: 10116)

>sp|Q0VC80|YRDC_BOVIN YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1

 Score =  174 bits (441), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/196 (47%), Positives = 128/196 (65%), Gaps = 5/196 (2%)

Query: 44  LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
           L+ G VVA+PTDTLYGLAC A+ S+A+  +Y +K R   KPLA+C+  + D+ ++     
Sbjct: 75  LRAGAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR- 133

Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
           V   LL +LLPGPVT+V  RSE LN +LNP    V +RIPDH F++ L ++   PLALTS
Sbjct: 134 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTS 193

Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
           AN S++ S+L + EFQ LW  LS++IDGG I +   PE R GST+VDLS    + I+R G
Sbjct: 194 ANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 253

Query: 220 VCYDKILKILHKYHLV 235
              +    IL +Y L+
Sbjct: 254 CALESTSAILQEYGLL 269

May regulate the activity of some transporters.

Bos taurus (taxid: 9913)

>sp|Q86U90|YRDC_HUMAN YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/197 (49%), Positives = 129/197 (65%), Gaps = 6/197 (3%)

Query: 44  LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
           L+ G VVA+PTDTLYGLAC A+ S A+  +Y +K R   KPLA+C+  + D+ ++     
Sbjct: 77  LRAGAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR- 135

Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
           V   LL +LLPGPVT+V  RSE LN +LNP    V +RIPDH F++ L ++ + PLALTS
Sbjct: 136 VPEGLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTS 195

Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
           AN S++ S+L + EFQ LW QLS+VIDGG I +   PE R GST+VDLS    + I+R G
Sbjct: 196 ANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPG 255

Query: 220 VCYDKILKIL-HKYHLV 235
              +    IL  KY L+
Sbjct: 256 CALESTTAILQQKYGLL 272

May regulate the activity of some transporters.

Homo sapiens (taxid: 9606)

>sp|Q3U5F4|YRDC_MOUSE YrdC domain-containing protein, mitochondrial OS=Mus musculus GN=Yrdc PE=1 SV=1

 Score =  169 bits (428), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/197 (48%), Positives = 128/197 (64%), Gaps = 6/197 (3%)

Query: 44  LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
           L+ G VVA+PTDTLYGLAC A++S A++ +Y +K R   KPLA+C+  + D+ ++     
Sbjct: 78  LRAGAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR- 136

Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
           V  ELL +L PGPVT+V  RSE LN +LNP    V +RIPDH F+  L ++   PLALTS
Sbjct: 137 VPRELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTS 196

Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKG 219
           AN S++ S+L + EFQ LW  LS+VIDGG I +   PE R GST+VDLS    + I+R G
Sbjct: 197 ANLSSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPG 256

Query: 220 VCYDKILKIL-HKYHLV 235
              +    IL  KY L+
Sbjct: 257 CALENTTSILQQKYGLL 273

May regulate the activity of some transporters.

Mus musculus (taxid: 10090)

>sp|Q60369|Y062_METJA Uncharacterized protein MJ0062 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0062 PE=3 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/150 (35%), Positives = 89/150 (59%), Gaps = 12/150 (8%)

Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G +V   TDTLYG++ +A N KA+  +Y IK+R+ NKPL+ICV +  +I K+A  + ++ 
Sbjct: 32  GKIVICGTDTLYGISANALNEKAVRKVYNIKRREFNKPLSICVRDKNEIEKYAYVNDLAK 91

Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK---VAVRIPDHKFLRQLLKLMDSPLALTS 163
           +++ + LPGP+TI+  +   +     P++     + +RIPD   +R+L  +   PL  TS
Sbjct: 92  KIIDKFLPGPLTIILKKKPGI-----PDIVAKDYIGIRIPDEPIIRELSIV---PLTTTS 143

Query: 164 ANESNEPSTLCINEFQK-LWSQLSVVIDGG 192
           AN S + S   ++E  K +  ++  VID G
Sbjct: 144 ANISGKESPTTVDEIDKEVLKKVDYVIDIG 173

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

>sp|Q0VTD8|RIMN_ALCBS tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rimN PE=3 SV=1

 Score = 94.0 bits (232), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 92/180 (51%), Gaps = 11/180 (6%)

Query: 38  LLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPK 97
           L AAQ +++G VVA PT+++YGL CD  N  A+  L  IK R V+K L +    +  +  
Sbjct: 6   LSAAQIIQEGGVVAYPTESVYGLGCDPFNRNAVMQLLAIKHRPVSKGLILIGESLAQLAP 65

Query: 98  WADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS 157
           +   +      L +  P P+T + + S+ L   +     KVAVR+PDH   RQL +L   
Sbjct: 66  YLHLNEQQSAQLEKKWPAPITYLVDASDRLPAWVRGEHRKVAVRVPDHPLARQLCQLAGQ 125

Query: 158 PLALTSANESNEPSTLCINEFQ---KLWSQLSVVIDGGI--ISNPERFGSTIVDLSEENV 212
           P+  TSAN S  P+    N +Q   +L +QL  ++ G     + P    STI+DL    +
Sbjct: 126 PIISTSANISGRPAAR--NRYQVARQLGNQLDFIVSGACDRAAKP----STIIDLESGRI 179

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) (taxid: 393595)

>sp|Q1QTJ8|RIMN_CHRSD tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=rimN PE=3 SV=1

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW- 98
           A   L++G ++A PT+ ++GL CD  +  A+  L  +K+RD  K L +   ++  +  W 
Sbjct: 11  AVAALRRGALLAYPTEAVWGLGCDPDDDAALARLIALKQRDPAKGLILIAGDMDQLEPWL 70

Query: 99  ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
           A    +    LAE  PGP T +   +      L    T +AVR+ DH  +RQL      P
Sbjct: 71  AGLDALQRARLAESWPGPNTWLVPDNGRARPLLRGEHTSLAVRVSDHPLVRQLCAAFGGP 130

Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDG--GIISNPERFGSTIVDL 207
           L  +SAN + EP  +   + +  + +   ++DG  G  + P    STI DL
Sbjct: 131 LVSSSANRAGEPPAMSAADVRAAFGEAVTLLDGALGGYARP----STIRDL 177

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

>sp|Q9KVT5|RIMN_VIBCH tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rimN PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A   L+KGCV+A PT+ ++GL CD  N  A+  L  IK+R V K + +  +    +  + 
Sbjct: 10  AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69

Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
           D   ++ E L ++L   P P+T V   S      +      VAVR+ DH  +++L     
Sbjct: 70  DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129

Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
            PL  TSAN S +P+ +   E   +L +Q++VV++G       R G +  ++ +     +
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG---KTSGRHGPS--EIRDARSLQV 184

Query: 216 VRKG 219
           +R+G
Sbjct: 185 LRQG 188

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) (taxid: 243277)

>sp|A5F4C5|RIMN_VIBC3 tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=rimN PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 9/184 (4%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A   L+KGCV+A PT+ ++GL CD  N  A+  L  IK+R V K + +  +    +  + 
Sbjct: 10  AVDALRKGCVIAYPTEGVFGLGCDPDNQTAMLRLLAIKQRPVEKGVILIAASYAQLRPYV 69

Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
           D   ++ E L ++L   P P+T V   S      +      VAVR+ DH  +++L     
Sbjct: 70  DETQLTAEQLTQVLASWPAPLTWVMPASGDTPSWVRGQFDTVAVRVSDHPVVQKLCLAFG 129

Query: 157 SPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSI 215
            PL  TSAN S +P+ +   E   +L +Q++VV++G       R G +  ++ +     +
Sbjct: 130 KPLTSTSANLSGQPACVTQQEVMVQLGNQIAVVVEG---KTSGRHGPS--EIRDARSLQV 184

Query: 216 VRKG 219
           +R+G
Sbjct: 185 LRQG 188

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) (taxid: 345073)

>sp|Q7MGL3|RIMN_VIBVY tRNA threonylcarbamoyladenosine biosynthesis protein RimN OS=Vibrio vulnificus (strain YJ016) GN=rimN PE=3 SV=2

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 4/156 (2%)

Query: 42  QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
           + LK+G VVA PT+ ++GL CD  N  AI  L  IK+R  +K L +  ++   +  + D 
Sbjct: 10  KALKQGQVVAYPTEGVFGLGCDPDNEVAIERLLTIKQRPSDKGLILIAADFQQLQPYLDL 69

Query: 102 HTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
            ++S E L  +    PGP T V   S   +  +      VAVR+ DH  +++L      P
Sbjct: 70  TSLSAEQLQRVFATWPGPYTWVMPASARASALVTGYRQTVAVRVSDHPLVQKLCSEYGKP 129

Query: 159 LALTSANESNEPSTLCINEFQ-KLWSQLSVVIDGGI 193
           L  TSAN S +     + + Q +L SQ+SV++ G I
Sbjct: 130 LTSTSANLSGQTECKTVEQVQDQLGSQISVILFGEI 165

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
114050899	274	ischemia/reperfusion inducible protein [	0.906	0.810	0.469	1e-55
195401705	259	GJ18829 [Drosophila virilis] gi|19414245	0.873	0.826	0.484	2e-51
357631745	296	ischemia/reperfusion inducible protein [	0.861	0.712	0.497	5e-51
195119554	228	GI19851 [Drosophila mojavensis] gi|19390	0.816	0.877	0.509	2e-50
189233999	210	PREDICTED: similar to CG33786 CG33786-PA	0.828	0.966	0.5	2e-50
225708092	268	Hypothetical protein ywlC [Osmerus morda	0.791	0.723	0.556	2e-50
348526097	267	PREDICTED: yrdC domain-containing protei	0.8	0.734	0.530	1e-49
195029409	250	GH19895 [Drosophila grimshawi] gi|193903	0.824	0.808	0.509	2e-49
270015172	203	hypothetical protein TcasGA2_TC030645 [T	0.812	0.980	0.5	2e-49
139949035	235	yrdC domain-containing protein, mitochon	0.783	0.817	0.536	1e-48

>gi|114050899|ref|NP_001040163.1| ischemia/reperfusion inducible protein [Bombyx mori] gi|87248253|gb|ABD36179.1| ischemia/reperfusion inducible protein [Bombyx mori]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/226 (46%), Positives = 154/226 (68%), Gaps = 4/226 (1%)

Query: 17  NAIALPSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEI 76
            ++ + + M S++   D  A+L AA+CL KG V+A+PTDT+YGLAC A    AI  LY I
Sbjct: 35  QSLMMRNTMTSVISCVDFTASLRAAECLAKGQVIAVPTDTIYGLACSANCPLAIKKLYSI 94

Query: 77  KKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNV 135
           K R+  KP+AICV+ + D+ KW +   +S +LL  LLPGPVT+V  +++HL N  LNP+ 
Sbjct: 95  KGREAVKPVAICVTSVADLRKWGEASHISDKLLDSLLPGPVTVVLQKTKHLDNPFLNPST 154

Query: 136 TKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS 195
           TK+ +RIP H F+  + K+ D P+ALTSAN SNEPSTL I EF+ L+  L+ + DGG++S
Sbjct: 155 TKIGIRIPKHDFMNTVTKIFDMPVALTSANFSNEPSTLSIKEFEHLYPHLAAIFDGGLLS 214

Query: 196 N---PERFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
                 R GST++DLS+  +Y I+RKG+ YD ++K++ +Y L + N
Sbjct: 215 QGLEQNRTGSTVIDLSKNGLYKIIRKGISYDNVIKVVERYGLKKNN 260

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195401705|ref|XP_002059453.1| GJ18829 [Drosophila virilis] gi|194142459|gb|EDW58865.1| GJ18829 [Drosophila virilis]

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/221 (48%), Positives = 145/221 (65%), Gaps = 7/221 (3%)

Query: 22  PSKMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDV 81
           P+ +C++  +    A  LA QCL  G V+ LPTDT+YGLACDA N +AI  LYEIK RD 
Sbjct: 38  PTPVCAVASL---DALKLAEQCLHLGQVIGLPTDTVYGLACDANNEEAIQRLYEIKGRDE 94

Query: 82  NKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAV 140
           +KP+AICV+ I  + ++     +S ELL  LLPGP+TI+  RS  L N  LNP+ TK+ +
Sbjct: 95  HKPVAICVNNIAALRRYGQASHLSDELLTRLLPGPLTIIVERSPQLSNRFLNPSTTKIGI 154

Query: 141 RIPDHKFLRQLLKLM-DSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE- 198
           RIPD+KF+R L     + PLALTSAN S+ PS+L ++EFQ LW QL  V D G I   E 
Sbjct: 155 RIPDYKFMRDLCATWHEQPLALTSANRSSAPSSLQVSEFQSLWPQLGAVFDAGRIGQTEE 214

Query: 199 -RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN 238
            R  ST++DL++   YSIVR GV   + L +LH++  V+++
Sbjct: 215 RRLASTVIDLAKPGSYSIVRAGVALKQTLAVLHEFGYVKQD 255

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631745|gb|EHJ79214.1| ischemia/reperfusion inducible protein [Danaus plexippus]

 Score =  206 bits (525), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/215 (49%), Positives = 145/215 (67%), Gaps = 4/215 (1%)

Query: 24  KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
           KM SI    D  + + AA+ L+KG V+A+PTDT+YGLAC A   +AI  LY IK RD  K
Sbjct: 77  KMASIFPCDDVSSYVKAAEYLEKGEVIAVPTDTIYGLACSAKCPEAIKKLYTIKGRDSIK 136

Query: 84  PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRI 142
           P+AICV+ I D+  W D   +S  LL  LLPGPVT+V  ++++L N  LNP  TK+ +RI
Sbjct: 137 PVAICVNSILDVRHWGDASHLSDILLNNLLPGPVTVVLEKTKYLDNPYLNPQTTKIGIRI 196

Query: 143 PDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS---NPER 199
           P++ F+  +  + + P+ALTSAN SNEPSTLCI EF+ L+  L  V DGG +S   N  R
Sbjct: 197 PNNVFINNMTNVFNKPVALTSANFSNEPSTLCIEEFKHLYEHLGAVFDGGTLSRGLNANR 256

Query: 200 FGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHL 234
            GSTIVDLS +  Y+I+RKG+ Y++I++ L+ Y L
Sbjct: 257 IGSTIVDLSVKGEYNIIRKGISYERIVEFLNSYGL 291

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195119554|ref|XP_002004296.1| GI19851 [Drosophila mojavensis] gi|193909364|gb|EDW08231.1| GI19851 [Drosophila mojavensis]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 137/204 (67%), Gaps = 4/204 (1%)

Query: 39  LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
           LA QCL+ G V+ALPTDT+YGLACDA N +AI  LYEIK RD +KP+AICV+ IT + ++
Sbjct: 22  LAEQCLQLGKVIALPTDTVYGLACDANNEQAIQRLYEIKGRDEHKPVAICVNNITALRRY 81

Query: 99  ADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQL-LKLMD 156
                +S ELL  LLPGP+TI+   + HL N  LNP+ +K+ +RIPD +F+R L  +  +
Sbjct: 82  GQASHLSDELLTRLLPGPLTIIVEHTPHLSNRYLNPSTSKIGIRIPDFQFIRDLCARWHE 141

Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYS 214
            PLALTSAN S+EPS+L I EFQ LW QL  + D G I   E  R  ST++DL+    Y 
Sbjct: 142 QPLALTSANRSSEPSSLEIIEFQALWPQLGAIFDAGRIGQTEERRLASTVIDLANPGCYE 201

Query: 215 IVRKGVCYDKILKILHKYHLVEKN 238
           IVR GV   + L +LH++  V +N
Sbjct: 202 IVRAGVALKQTLSVLHEFGYVNQN 225

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233999|ref|XP_001811736.1| PREDICTED: similar to CG33786 CG33786-PA, partial [Tribolium castaneum]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 103/206 (50%), Positives = 137/206 (66%), Gaps = 3/206 (1%)

Query: 29  VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
           V + DP A  LA   LK G V+ALPTDT+YGLACDATN  +IN LY IK R+  KP+AIC
Sbjct: 5   VPIRDPHAEALAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAIC 64

Query: 89  VSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFL 148
           + ++  +  WA    +   LL  LLPGPVT++   +  L+  L+ N  KV +RIPD+ F+
Sbjct: 65  LGDVPQVKAWAKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFN-AKVGIRIPDYHFI 123

Query: 149 RQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVD 206
           R L + +  PLALTSAN SNEPS+L INEFQ LW+Q+  V DGG +   +  R  ST++D
Sbjct: 124 RALARGLGRPLALTSANLSNEPSSLTINEFQDLWAQVGAVFDGGNLGLDDSRRRASTVID 183

Query: 207 LSEENVYSIVRKGVCYDKILKILHKY 232
           LSE  +++IVR G+  DK + ILHK+
Sbjct: 184 LSECGLFTIVRHGIAVDKTVAILHKF 209

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225708092|gb|ACO09892.1| Hypothetical protein ywlC [Osmerus mordax]

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 109/196 (55%), Positives = 135/196 (68%), Gaps = 2/196 (1%)

Query: 42  QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
           Q LK+G VVALPTDT+YGLAC A NS AI  +YEIK R+  KPLAICV EI DI K+   
Sbjct: 69  QSLKEGQVVALPTDTIYGLACLAQNSDAIKRVYEIKGRNGQKPLAICVGEIQDIYKYCKV 128

Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
            +V  ELL ELLPGPVT+V  RS  LN +LNP    V VRIP+H F+R+L +L   PLAL
Sbjct: 129 -SVKEELLKELLPGPVTLVLQRSTVLNTDLNPFTPLVGVRIPNHPFMRRLCQLCAEPLAL 187

Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
           TSAN S   ST+ ++EFQ LW +L+VV+DGG I +  R GST++DLS    Y I+R G  
Sbjct: 188 TSANISTHSSTVAVHEFQDLWPRLAVVVDGGPIGDHSRLGSTVIDLSVFGKYRIIRPGCA 247

Query: 222 YDKILKIL-HKYHLVE 236
           +   + +L HKY L+E
Sbjct: 248 FSATVDLLEHKYGLLE 263

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348526097|ref|XP_003450557.1| PREDICTED: yrdC domain-containing protein, mitochondrial-like [Oreochromis niloticus]

 Score =  202 bits (513), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/198 (53%), Positives = 135/198 (68%), Gaps = 2/198 (1%)

Query: 42  QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
           + LK+G +VA+PTDT+YGLAC A NS A+   Y+ K R+  KPLAICV EI DI      
Sbjct: 68  KALKEGHIVAVPTDTIYGLACLAQNSDAVRKTYDTKGRNGQKPLAICVGEIQDI-YKYCK 126

Query: 102 HTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLAL 161
             V  ELL +LLPGPVT+VF RSE LN +LNP  + V VRIPDH F+RQL ++   PLAL
Sbjct: 127 VKVKKELLGDLLPGPVTLVFERSEELNTDLNPFTSLVGVRIPDHPFMRQLCQMCGEPLAL 186

Query: 162 TSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVC 221
           TSAN S++ ST+ ++EFQ+LW +L+VV+DGG I +  R GST+VDLS    Y I+R G  
Sbjct: 187 TSANISSQTSTVEVHEFQELWPKLAVVVDGGPIGDQSRLGSTVVDLSVLGKYRIIRPGCA 246

Query: 222 YDKILKIL-HKYHLVEKN 238
               + +L HKY L E +
Sbjct: 247 LSSTVDVLKHKYGLSEHS 264

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|195029409|ref|XP_001987565.1| GH19895 [Drosophila grimshawi] gi|193903565|gb|EDW02432.1| GH19895 [Drosophila grimshawi]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 105/206 (50%), Positives = 134/206 (65%), Gaps = 4/206 (1%)

Query: 39  LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
           LA QCL+ G V+ALPTDT+YGLACDA N +AI  LYEIK RD +KP+AICV+ I  + ++
Sbjct: 42  LAEQCLQLGKVIALPTDTVYGLACDANNEEAIQRLYEIKGRDAHKPVAICVNTIGALRRY 101

Query: 99  ADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKLM-D 156
                +S ELL  LLPGP+TIV  R+  L N  LNP+ T++ +RIPD KF+R L     +
Sbjct: 102 GQASHLSDELLTRLLPGPLTIVIERTPQLSNRFLNPSTTRIGIRIPDFKFMRDLCGTWHE 161

Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGII--SNPERFGSTIVDLSEENVYS 214
            PLALTSAN S+ PS+L I+EFQ LW QL  V D G I  S   R  ST++DL     Y 
Sbjct: 162 QPLALTSANRSSAPSSLHISEFQALWPQLGAVFDAGRIGLSEERRLASTVIDLVTPGCYD 221

Query: 215 IVRKGVCYDKILKILHKYHLVEKNTF 240
           IVR GV   + L +LH++  V K+  
Sbjct: 222 IVRSGVALKQTLAVLHEFGYVAKSQL 247

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015172|gb|EFA11620.1| hypothetical protein TcasGA2_TC030645 [Tribolium castaneum]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 136/202 (67%), Gaps = 3/202 (1%)

Query: 39  LAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKW 98
           LA   LK G V+ALPTDT+YGLACDATN  +IN LY IK R+  KP+AIC+ ++  +  W
Sbjct: 2   LAVDLLKSGRVIALPTDTVYGLACDATNITSINKLYSIKGRNEAKPVAICLGDVPQVKAW 61

Query: 99  ADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSP 158
           A    +   LL  LLPGPVT++   +  L+  L+ N  KV +RIPD+ F+R L + +  P
Sbjct: 62  AKIGHLPQGLLESLLPGPVTVILTSASTLDKSLSFN-AKVGIRIPDYHFIRALARGLGRP 120

Query: 159 LALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIIS--NPERFGSTIVDLSEENVYSIV 216
           LALTSAN SNEPS+L INEFQ LW+Q+  V DGG +   +  R  ST++DLSE  +++IV
Sbjct: 121 LALTSANLSNEPSSLTINEFQDLWAQVGAVFDGGNLGLDDSRRRASTVIDLSECGLFTIV 180

Query: 217 RKGVCYDKILKILHKYHLVEKN 238
           R G+  DK + ILHK+ L+ K+
Sbjct: 181 RHGIAVDKTVAILHKFGLINKH 202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|139949035|ref|NP_001077336.1| yrdC domain-containing protein, mitochondrial [Danio rerio] gi|134025291|gb|AAI34956.1| Zgc:162301 protein [Danio rerio]

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 135/194 (69%), Gaps = 2/194 (1%)

Query: 44  LKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT 103
           LK G VVA+PTDT+YGLAC A NS+AI  +Y+IK R+ +KPLAICV EI DI K+    +
Sbjct: 38  LKAGQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKV-S 96

Query: 104 VSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTS 163
           V   LL +LLPGPVT+V  RS  LN +LNP    + VRIPDH F+R+L ++ D+PLALTS
Sbjct: 97  VKDRLLRDLLPGPVTLVLERSATLNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTPLALTS 156

Query: 164 ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD 223
           AN S + ST+  NEF+ LW +L+VV+DGG I +  R GST+VDLS    Y I+R G    
Sbjct: 157 ANVSTQSSTVAANEFEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIRPGCALS 216

Query: 224 KILKILH-KYHLVE 236
             ++IL  +Y L+E
Sbjct: 217 ATVQILEGRYGLLE 230

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
ZFIN|ZDB-GENE-070410-65	263	zgc:162301 "zgc:162301" [Danio	0.771	0.718	0.534	3.8e-46
UNIPROTKB|F1NJF5	259	YRDC "Uncharacterized protein"	0.783	0.741	0.489	1e-43
FB|FBgn0061361	248	CG33786 [Drosophila melanogast	0.934	0.923	0.436	4.5e-43
MGI|MGI:2387201	280	Yrdc "yrdC domain containing (	0.767	0.671	0.489	7.3e-43
UNIPROTKB|Q0VC80	276	YRDC "YrdC domain-containing p	0.767	0.681	0.481	9.3e-43
UNIPROTKB|Q86U90	279	YRDC "YrdC domain-containing p	0.767	0.673	0.494	1.9e-42
RGD|708492	280	Yrdc "yrdC domain containing (	0.767	0.671	0.489	1.9e-42
UNIPROTKB|E2R8D0	274	YRDC "Uncharacterized protein"	0.767	0.686	0.484	4.6e-41
TAIR|locus:2175173	288	AT5G60590 "AT5G60590" [Arabido	0.869	0.739	0.423	1.1e-39
UNIPROTKB|Q2GDI6	195	NSE_0579 "Sua5/YciO/YrdC/YwlC	0.681	0.856	0.363	7e-22

ZFIN|ZDB-GENE-070410-65 zgc:162301 "zgc:162301" [Danio rerio (taxid:7955)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 102/191 (53%), Positives = 133/191 (69%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VVA+PTDT+YGLAC A NS+AI  +Y+IK R+ +KPLAICV EI DI K+    +V  
Sbjct:    69 GQVVAVPTDTIYGLACVAQNSEAIRRVYDIKGRNGDKPLAICVGEIHDIYKYCKV-SVKD 127

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
              LL +LLPGPVT+V  RS  LN +LNP    + VRIPDH F+R+L ++ D+PLALTSAN 
Sbjct:   128 RLLRDLLPGPVTLVLERSATLNGDLNPFTKLIGVRIPDHPFMRRLCQMCDTPLALTSANV 187

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL 226
             S + ST+  NEF+ LW +L+VV+DGG I +  R GST+VDLS    Y I+R G      +
Sbjct:   188 STQSSTVAANEFEDLWPRLAVVVDGGPIEDKSRLGSTVVDLSVCGRYRIIRPGCALSATV 247

Query:   227 KILH-KYHLVE 236
             +IL  +Y L+E
Sbjct:   248 QILEGRYGLLE 258

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1NJF5 YRDC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 97/198 (48%), Positives = 137/198 (69%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G +VA+PTDT+YG+AC A +S+A+  +Y +K R+  KPLAIC+ ++  I ++   + V  
Sbjct:    63 GGLVAVPTDTVYGVACLAQDSRAVQSIYSLKGRNGTKPLAICLGDVEHIYRYCHVN-VPD 121

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
             ELL +LLPGPVT+V  RSE LN +LNP  + V VRIP+H F+R+L +    PLALTSAN 
Sbjct:   122 ELLQDLLPGPVTLVLKRSEELNKDLNPFTSLVGVRIPNHPFIRELARACPGPLALTSANV 181

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ STL ++EFQ LW QLS+V+DGG I +   PE R GST+VDLS    ++I+R G   
Sbjct:   182 SSQASTLTVSEFQDLWPQLSLVVDGGPIGDVQSPECRLGSTVVDLSVSGKFTIIRPGCAL 241

Query:   223 DKILKILH-KYHLVEKNT 239
                ++IL  KY LV +++
Sbjct:   242 TSTVEILRQKYGLVPESS 259

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0051051 "negative regulation of transport" evidence=IEA

FB|FBgn0061361 CG33786 [Drosophila melanogaster (taxid:7227)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 104/238 (43%), Positives = 137/238 (57%)

Query:     3 LRLHSFFTLGLFYHNAIALPSKMCSIVKVTDPXXXXXXXXXXXXGCVVALPTDTLYGLAC 62
             LR H   T     H A  L + +C+   V D             G V+ALPTDT+YGLAC
Sbjct:    12 LRAHH--TSSRMQHQASELRTPVCA---VGDEAALQLARQCLLGGQVIALPTDTVYGLAC 66

Query:    63 DATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFN 122
             DA N  AI  LYEIK RD +KP+AICV  I  + ++     +S ELL  LLPGP+TIV  
Sbjct:    67 DANNETAIQQLYEIKGRDEHKPVAICVHNIDALRRFGQAAHLSDELLTRLLPGPLTIVIE 126

Query:   123 RSEHL-NLELNPNVTKVAVRIPDHKFLRQLLKL-MDSPLALTSANESNEPSTLCINEFQK 180
             R+  L N  LNP+ +K+ +RIPD  F+R L  +  + PLALTSAN S+ PS+L ++EF+ 
Sbjct:   127 RTSQLSNRFLNPSTSKIGIRIPDFNFMRDLCAVWQEKPLALTSANRSSAPSSLQVSEFRS 186

Query:   181 LWSQLSVVIDGGIISNPE--RFGSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVE 236
             LW QL  V D G I   E  R  ST++DL+    Y IVR GV     L ++ ++ + E
Sbjct:   187 LWPQLGAVFDAGRIGLTEERRLASTVIDLATPGYYEIVRAGVALKPTLSLMEEFGIRE 244

GO:0006412 "translation" evidence=ISS

GO:0045182 "translation regulator activity" evidence=ISS

GO:0003725 "double-stranded RNA binding" evidence=IEA

MGI|MGI:2387201 Yrdc "yrdC domain containing (E.coli)" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 95/194 (48%), Positives = 126/194 (64%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VVA+PTDTLYGLAC A++S A++ +Y +K R   KPLA+C+  + D+ ++     V  
Sbjct:    81 GAVVAVPTDTLYGLACSASSSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR-VPR 139

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
             ELL +L PGPVT+V  RSE LN +LNP    V +RIPDH F+  L ++   PLALTSAN 
Sbjct:   140 ELLEDLFPGPVTLVMERSEELNKDLNPFTRLVGIRIPDHAFMLDLAQMFGGPLALTSANL 199

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ S+L + EFQ LW  LS+VIDGG I +   PE R GST+VDLS    + I+R G   
Sbjct:   200 SSQASSLSVEEFQDLWPHLSLVIDGGPIGDSQSPECRLGSTVVDLSVPGKFGIIRPGCAL 259

Query:   223 DKILKILH-KYHLV 235
             +    IL  KY L+
Sbjct:   260 ENTTSILQQKYGLL 273

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0051051 "negative regulation of transport" evidence=ISA

UNIPROTKB|Q0VC80 YRDC "YrdC domain-containing protein, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 93/193 (48%), Positives = 126/193 (65%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VVA+PTDTLYGLAC A+ S+A+  +Y +K R   KPLA+C+  + D+ ++     V  
Sbjct:    78 GAVVAVPTDTLYGLACSASCSEALGAVYRVKGRSETKPLAVCLGRVADVYRYCHVR-VPE 136

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
              LL +LLPGPVT+V  RSE LN +LNP    V +RIPDH F++ L ++   PLALTSAN 
Sbjct:   137 GLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANL 196

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ S+L + EFQ LW  LS++IDGG I +   PE R GST+VDLS    + I+R G   
Sbjct:   197 SSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCAL 256

Query:   223 DKILKILHKYHLV 235
             +    IL +Y L+
Sbjct:   257 ESTSAILQEYGLL 269

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051051 "negative regulation of transport" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 96/194 (49%), Positives = 127/194 (65%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VVA+PTDTLYGLAC A+ S A+  +Y +K R   KPLA+C+  + D+ ++     V  
Sbjct:    80 GAVVAVPTDTLYGLACAASCSAALRAVYRLKGRSEAKPLAVCLGRVADVYRYCRVR-VPE 138

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
              LL +LLPGPVT+V  RSE LN +LNP    V +RIPDH F++ L ++ + PLALTSAN 
Sbjct:   139 GLLKDLLPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANL 198

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ S+L + EFQ LW QLS+VIDGG I +   PE R GST+VDLS    + I+R G   
Sbjct:   199 SSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQSPECRLGSTVVDLSVPGKFGIIRPGCAL 258

Query:   223 DKILKILH-KYHLV 235
             +    IL  KY L+
Sbjct:   259 ESTTAILQQKYGLL 272

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0051051 "negative regulation of transport" evidence=IDA

RGD|708492 Yrdc "yrdC domain containing (E.coli)" [Rattus norvegicus (taxid:10116)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 95/194 (48%), Positives = 125/194 (64%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VVA+PTDTLYGLAC A+ S A++ +Y +K R   KPLA+C+  + D+ ++     V  
Sbjct:    81 GAVVAVPTDTLYGLACSASCSAALSCVYRLKGRSEAKPLAVCLGRVADVYRYCQVR-VPR 139

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
             ELL +L PGPVT+V  RSE LN +LNP    V +RIPDH F+  L ++   PLALTSAN 
Sbjct:   140 ELLEDLFPGPVTLVMERSEELNKDLNPFTPLVGIRIPDHAFMLDLAQMFGGPLALTSANL 199

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ S+L + EFQ LW  LS+VIDGG I +   PE R GST+VDLS    + I+R G   
Sbjct:   200 SSQASSLSVEEFQDLWPHLSLVIDGGPIGDSESPECRLGSTVVDLSVPGKFGIIRSGCAL 259

Query:   223 DKILKILH-KYHLV 235
             +    IL  KY L+
Sbjct:   260 ENTTAILQGKYGLL 273

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISO

GO:0051051 "negative regulation of transport" evidence=IEA;ISO

UNIPROTKB|E2R8D0 YRDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 94/194 (48%), Positives = 126/194 (64%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VV +PTDTLYG AC A+ S A++ +Y +K R   KPLA+C+  + D+ ++    +V  
Sbjct:    73 GAVVTVPTDTLYGQACAASCSAALDAVYRLKGRSHAKPLAVCLGRVADVYRYCRV-SVPE 131

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
              LL +LLPGPVT+V  RS+ LN +LNP    V VRIPDH F++ L ++   PLALTSAN 
Sbjct:   132 GLLRDLLPGPVTLVLERSQELNRDLNPCTPLVGVRIPDHAFIQDLAQVFGEPLALTSANL 191

Query:   167 SNEPSTLCINEFQKLWSQLSVVIDGGIISN---PE-RFGSTIVDLSEENVYSIVRKGVCY 222
             S++ S+L + EFQ LW QLS+VIDGG I +   PE R GST+VDLS    + I+R G   
Sbjct:   192 SSQASSLTVEEFQDLWPQLSLVIDGGPIGDGQSPEYRLGSTVVDLSVPGKFGIIRPGCAL 251

Query:   223 DKILKILH-KYHLV 235
             +    IL  KY L+
Sbjct:   252 ESTTAILRQKYGLL 265

GO:0003725 "double-stranded RNA binding" evidence=IEA

TAIR|locus:2175173 AT5G60590 "AT5G60590" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.1e-39, P = 1.1e-39
 Identities = 92/217 (42%), Positives = 130/217 (59%)

Query:    23 SKMCSIVKVTDPXXXXXXXXXXXXGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVN 82
             SK C +   T+               V+A+PTDTLYG ACDA + +A++ +YEIK R + 
Sbjct:    63 SKSCLVHPATEAYAQEAIEAIKSEK-VIAVPTDTLYGFACDACSLEAVSRIYEIKGRKLT 121

Query:    83 KPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLE--LNPNVTKVAV 140
              PLAICV ++ DI + A T  +   LL  LLPGPVT+V  R E   LE  LNP +  + V
Sbjct:   122 SPLAICVGDVLDIKRVATTSHLPHGLLDSLLPGPVTLVLQRGESSILEKSLNPGIGTIGV 181

Query:   141 RIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERF 200
             R+PD +F+R++ +   S LALTSAN S + S++C+ +F+ LW   + V DGG++ +  R 
Sbjct:   182 RVPDCEFIREVSRGSGSVLALTSANLSGDRSSVCVKDFENLWQHCAYVYDGGLLPSG-RA 240

Query:   201 GSTIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEK 237
             GSTIVDL++   Y I+R G      + IL KY L E+
Sbjct:   241 GSTIVDLTKVGKYKIIRPGSAKQATVAILEKYLLEEE 277

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2GDI6 NSE_0579 "Sua5/YciO/YrdC/YwlC family protein" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 64/176 (36%), Positives = 99/176 (56%)

Query:    47 GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
             G VV  PT+T+Y LACDA+N +A+  +Y+IK+R+  K L I V+ I+D+  +A  +    
Sbjct:    12 GGVVIFPTETVYALACDASNYRAMLRIYDIKQRNFRKSLPIMVAGISDLGSFASFNESQA 71

Query:   107 ELLAELLPGPVTIVFNRSEHLNLELN-PNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
              L+ E  PGPVT +  R +  +L    P   KVAVR+PD K   ++L+    P+  TS N
Sbjct:    72 RLIQECCPGPVTFILKRKKSAHLRFRFPE--KVAVRVPDSKVALKILRGFKRPVFATSVN 129

Query:   166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG--STIVDLSEENVYSIVRKG 219
              S  P+   ++ F ++ S +   +   I  N E  G  S+I+D+S +    +VRKG
Sbjct:   130 LSGRPA---VSNFTQIGSYIKKRVSRIICDNREVKGTASSIIDISGKRAV-LVRKG 181

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B0U4N0	RIMN_XYLFM	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
B2I8S9	RIMN_XYLF2	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
A8AQH7	RIMN_CITK8	No assigned EC number	0.3067	0.6448	0.8315	yes	N/A
A8GYH9	RIMN_SHEPA	No assigned EC number	0.3208	0.7020	0.9197	yes	N/A
Q9PEV9	RIMN_XYLFA	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
Q8EKQ3	RIMN_SHEON	No assigned EC number	0.3109	0.6448	0.8404	yes	N/A
B0TLD6	RIMN_SHEHH	No assigned EC number	0.3118	0.6979	0.9144	yes	N/A
Q0HPA1	RIMN_SHESM	No assigned EC number	0.3170	0.6448	0.8404	yes	N/A
A6WHB6	RIMN_SHEB8	No assigned EC number	0.3012	0.6448	0.8404	yes	N/A
Q3U5F4	YRDC_MOUSE	No assigned EC number	0.4873	0.7795	0.6821	yes	N/A
Q87AQ5	RIMN_XYLFT	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
A8FP81	RIMN_SHESH	No assigned EC number	0.3136	0.6653	0.8810	yes	N/A
Q8P4F2	RIMN_XANCP	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
Q0VC80	YRDC_BOVIN	No assigned EC number	0.4795	0.7795	0.6920	yes	N/A
Q1QTJ8	RIMN_CHRSD	No assigned EC number	0.3040	0.6693	0.8864	yes	N/A
Q499R4	YRDC_RAT	No assigned EC number	0.4822	0.7795	0.6821	yes	N/A
Q0VTD8	RIMN_ALCBS	No assigned EC number	0.3388	0.6897	0.9285	yes	N/A
B0RWR5	RIMN_XANCB	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
P45831	Y1136_MYCLE	No assigned EC number	0.2910	0.8244	0.9181	yes	N/A
Q86U90	YRDC_HUMAN	No assigned EC number	0.4923	0.7795	0.6845	yes	N/A
A3CYL0	RIMN_SHEB5	No assigned EC number	0.3012	0.6448	0.8404	yes	N/A
Q0I0R7	RIMN_SHESR	No assigned EC number	0.3170	0.6448	0.8404	yes	N/A
Q4UQ07	RIMN_XANC8	No assigned EC number	0.3048	0.6448	0.8449	yes	N/A
A0KR66	RIMN_SHESA	No assigned EC number	0.3170	0.6448	0.8404	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
pfam01300	178	pfam01300, Sua5_yciO_yrdC, Telomere recombination	3e-56
COG0009	211	COG0009, SUA5, Putative translation factor (SUA5)	7e-50
TIGR00057	201	TIGR00057, TIGR00057, tRNA threonylcarbamoyl adeno	8e-42
PRK10634	190	PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarb	6e-14
PRK11630	206	PRK11630, PRK11630, hypothetical protein; Provisio	2e-10
COG0068	750	COG0068, HypF, Hydrogenase maturation factor [Post	6e-10
TIGR00143	711	TIGR00143, hypF, [NiFe] hydrogenase maturation pro	1e-09

>gnl|CDD|216422 pfam01300, Sua5_yciO_yrdC, Telomere recombination

 Score =  177 bits (451), Expect = 3e-56
 Identities = 72/181 (39%), Positives = 106/181 (58%), Gaps = 6/181 (3%)

Query: 42  QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT 101
           + L++G +VA PTDT+YGL CDATN +A+  L EIK R  +KPLA+ VS++  + K+AD 
Sbjct: 1   EALRQGGIVAYPTDTVYGLGCDATNEEAVERLREIKGRPRDKPLAVMVSDLEQLKKYADE 60

Query: 102 HT-VSFELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
               + +L     PGP+T++   S   L   + P +  V VR+PDH   R LL+ +  PL
Sbjct: 61  LEEAALKLAERFWPGPITLILPASKSSLPKLVTPGLGTVGVRLPDHPLARLLLEALGEPL 120

Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRK 218
             TSAN S EPS     E  ++L   + +++DGG I       ST+VDL++     I+R+
Sbjct: 121 VATSANLSGEPSATDAEEVLEELGGIVDLILDGGRIPVGV--DSTVVDLTDGK-PRILRR 177

Query: 219 G 219
           G
Sbjct: 178 G 178

This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast. Length = 178

>gnl|CDD|223088 COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

 Score =  162 bits (411), Expect = 7e-50
 Identities = 75/191 (39%), Positives = 112/191 (58%), Gaps = 9/191 (4%)

Query: 33  DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
            P+A   A + L+KG VVA PTDT+YGL  DATN +A+  LYEIK+R  +KPL + V+ +
Sbjct: 12  QPRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASL 71

Query: 93  TDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLRQL 151
             + ++AD   V+ +LL    PGP+T +   ++ +   L    ++ +AVR+PDH     L
Sbjct: 72  EQLKEYADVPDVARKLLKAFWPGPLTFILPATKEVPRRLVTAGLSTIAVRVPDHPIALAL 131

Query: 152 LKLMDSPLALTSANESNEPSTLCINE-FQKLWSQLSVVIDGGIISNPERFG--STIVDLS 208
           ++ +  PLA TSAN S +PS     E       Q+ ++IDGG    P R G  STI+DL+
Sbjct: 132 IEALGEPLASTSANLSGQPSPTTAEEVRADFGGQVDLIIDGG----PCRGGLPSTIIDLT 187

Query: 209 EENVYSIVRKG 219
           ++    I+R G
Sbjct: 188 DDPPR-ILRPG 197

Length = 211

>gnl|CDD|232802 TIGR00057, TIGR00057, tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family

 Score =  140 bits (356), Expect = 8e-42
 Identities = 64/193 (33%), Positives = 111/193 (57%), Gaps = 8/193 (4%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A + L+KG +V  PTDT+YG+  DA +  A+  LY IK R  NKPL + VS++++I K+A
Sbjct: 14  AVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYA 73

Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
                +  L+ +  PGP+T+V  ++  +   ++     + +R+PD+    +LL+ +  P+
Sbjct: 74  YVPDDAKRLMKKFWPGPLTLVLKKTPEIPRRVSGKRKTIGIRVPDNPIALELLEELGKPI 133

Query: 160 ALTSANESNEPSTLCINE-FQKLWSQLSVVIDGG--IISNPERFGSTIVDLSEENVYSIV 216
             TSAN S +PS   + E   +L   + ++ID G  +   P    STI+DL+++    ++
Sbjct: 134 VATSANLSGKPSATDVEEAVDELGKLVDLIIDAGPCLGGEP----STIIDLTDDTP-KVL 188

Query: 217 RKGVCYDKILKIL 229
           R+GV  + I K+L
Sbjct: 189 REGVGSEPIEKVL 201

Has paralogs, but YrdC called a tRNA modification protein. Ref 2 authors say probably heteromultimeric complex. Paralogs may mean its does the final binding to the tRNA [Protein synthesis, tRNA and rRNA base modification]. Length = 201

>gnl|CDD|182603 PRK10634, PRK10634, tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional

 Score = 67.8 bits (166), Expect = 6e-14
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 3/134 (2%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A   L +  V+A PT+ ++G+ CD  +  A+  L E+K+R V+K L +  +    +  + 
Sbjct: 13  AVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 72

Query: 100 DTHTVSFELLAELL---PGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
           D   ++      +    PGPVT VF         L      +AVR+ DH  +  L +   
Sbjct: 73  DDSMLTDAQRETIFSCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYG 132

Query: 157 SPLALTSANESNEP 170
            PL  TSAN S  P
Sbjct: 133 KPLVSTSANLSGLP 146

Length = 190

>gnl|CDD|183245 PRK11630, PRK11630, hypothetical protein; Provisional

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 42/195 (21%), Positives = 92/195 (47%), Gaps = 13/195 (6%)

Query: 33  DPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVS 90
           +P+  L+  A + ++KG V+  PTD+ Y L C   +  A+  +  I++        +   
Sbjct: 11  NPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCR 70

Query: 91  EITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLEL-NPNVTKVAVRIPDHKFLR 149
           +++++  ++    V+F L+    PG  T +   ++ +   L       + +R+P +    
Sbjct: 71  DLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGLRVPSNPIAL 130

Query: 150 QLLKLMDSPLALTS----ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIV 205
            LL+ +  P+  TS     ++  E     I +  +L  Q+ ++I GG +       +T++
Sbjct: 131 ALLEALGEPMLSTSLMLPGSDFTESDPEEIKD--RLEKQVDLIIHGGYLGQQP---TTVI 185

Query: 206 DLSEENVYSIVRKGV 220
           DL+ ++   +VR+GV
Sbjct: 186 DLT-DDTPVVVREGV 199

Length = 206

>gnl|CDD|223146 COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 15/176 (8%)

Query: 29  VKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAIC 88
                 +A   AA+ LK G +VA+     + LACDA N +A+  L + K R   KP A+ 
Sbjct: 192 AIAEANEAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVM 250

Query: 89  VSEITDIPKWADTHTVSFELL-AELLPGPVTIVFNRSEHLNLELN--PNVTKVAVRIP-- 143
             ++  I ++A+ +    ELL +   P    ++  + +   LE N  P +  + V +P  
Sbjct: 251 AKDLETIEEFAEVNDEEEELLTSPSRP---IVLLKKKKVFLLESNIAPGLHTIGVMLPYT 307

Query: 144 -DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE 198
             H  L  L + +D P  +TSAN   EP  + I+  + L  +L  + D  ++ N E
Sbjct: 308 PLHHLL--LQESLDIPYVMTSANLPGEP--MAIDNEEAL-EKLKGIADYFLLHNRE 358

Length = 750

>gnl|CDD|232844 TIGR00143, hypF, [NiFe] hydrogenase maturation protein HypF

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 36  AALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDI 95
           A L AA+ LKKG ++A+     + LACDA N + +  L   K R   KP A+   ++   
Sbjct: 164 ALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESA 222

Query: 96  PKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELN--PNVTKVAVRIPDHKFLRQLLK 153
            + A+ + +  ELL    P    ++  +   + L  N  PN+  + V +P       LL+
Sbjct: 223 EQHAELNNLECELL--TSPAAPIVLLRKKPDIKLAPNIAPNLPTIGVMLPYTPLHHLLLQ 280

Query: 154 LMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISN 196
           L+  PL +TSAN    P  + I+  + L  +L  + DG ++ N
Sbjct: 281 LLAFPLVMTSANLPGLP--MAIDNAEIL-DKLQGIADGFLVHN 320

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression [Protein fate, Protein modification and repair]. Length = 711

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
COG0009	211	SUA5 Putative translation factor (SUA5) [Translati	100.0
TIGR00057	201	Sua5/YciO/YrdC/YwlC family protein. partial match	100.0
PRK11630	206	hypothetical protein; Provisional	100.0
PRK10634	190	tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modif	100.0
PF01300	179	Sua5_yciO_yrdC: Telomere recombination; InterPro:	100.0
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	100.0
KOG3051|consensus	261		99.97
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	99.92
COG2192	555	Predicted carbamoyl transferase, NodU family [Post	98.07
PF02543	360	CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036	92.55

>COG0009 SUA5 Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.5e-57  Score=391.19  Aligned_cols=193  Identities=37%  Similarity=0.604  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhhC
Q psy198           34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELL  113 (245)
Q Consensus        34 ~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~w  113 (245)
                      +..+++|++.|++|++|+|||||+|||||++.|++||+|||++|||+.+|||+++++|+++++.|+.+++...+++++||
T Consensus        13 ~~~~~~a~~~l~~G~vVa~PTeTVYGLg~~~~~~~Av~~i~~~K~Rp~~kpLil~~~~~~~l~~~~~~~~~~~~l~~~fw   92 (211)
T COG0009          13 PRAIEKAVEALRKGGVVAYPTDTVYGLGADATNEEAVERLYEIKQRPSDKPLILHVASLEQLKEYADVPDVARKLLKAFW   92 (211)
T ss_pred             hHHHHHHHHHHHcCCEEEEEccchheeecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHHhC
Confidence            56899999999999999999999999999999999999999999999999999999999999999998888999999999


Q ss_pred             CCCEEEEecCCCcccc-ccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCccEEEeC
Q psy198          114 PGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLSVVIDG  191 (245)
Q Consensus       114 PGplTlIl~~~~~lp~-~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd~ivd~  191 (245)
                      |||+|||+|+++..|. ..+.+.+|||||||+||++++||+++|.||++||||+||++++++.+++.+.| +++|+|+|+
T Consensus        93 PGPlT~Il~~~~~~~~~~~~~~~~TiavRvP~hpi~~~Li~~~G~Pl~stSANlsG~ps~tt~~ev~~~~~~~v~~iidg  172 (211)
T COG0009          93 PGPLTFILPATKEVPRRLVTAGLSTIAVRVPDHPIALALIEALGEPLASTSANLSGQPSPTTAEEVRADFGGQVDLIIDG  172 (211)
T ss_pred             CCCeEEEEeCCCCCChhhhcCCCCeEEEECCCCHHHHHHHHHhCCceEEcCcCcCCCCCCCCHHHHHHHhcccCeEEEeC
Confidence            9999999999888885 44667789999999999999999999999999999999999999999987655 689999999


Q ss_pred             CCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHHHHH
Q psy198          192 GIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL  229 (245)
Q Consensus       192 g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~~~l  229 (245)
                      |.+..  +.+|||||++ +++++++|+|++..+.++.+
T Consensus       173 g~~~~--g~pSTIiDlt-~~~~~ilR~G~i~~~~i~~~  207 (211)
T COG0009         173 GPCRG--GLPSTIIDLT-DDPPRILRPGAISLEEIEKL  207 (211)
T ss_pred             CccCC--CCCceEEECC-CCCcEEEeCCCCCHHHHHHH
Confidence            99874  9999999999 78899999999877666554

>TIGR00057 Sua5/YciO/YrdC/YwlC family protein

Probab=100.00  E-value=1.6e-56  Score=384.84  Aligned_cols=195  Identities=31%  Similarity=0.515  Sum_probs=180.5

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL  109 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~  109 (245)
                      ++++.+.+++|+++|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||++|++|++++.+|+.+++...+++
T Consensus         4 ~~~~~~~i~~a~~~L~~G~ii~~PTdTvYgL~~~~~~~~av~ri~~iK~R~~~Kpl~~l~~~~~~l~~~~~~~~~~~~l~   83 (201)
T TIGR00057         4 ENPSQRGIEQAVKILRKGGIVVYPTDTVYGIGADALDEDAVRRLYRIKGRPSNKPLTVLVSDLSEIEKYAYVPDDAKRLM   83 (201)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEeCCCHHHhhcCCCCHHHHHHHHHHhCCCCCCCeEEEECCHHHHHHHhcCCHHHHHHH
Confidence            44567789999999999999999999999999999999999999999999999999999999999999998877788999


Q ss_pred             HhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCccEE
Q psy198          110 AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLSVV  188 (245)
Q Consensus       110 ~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd~i  188 (245)
                      ++|||||+|+|+++++.+|+.++++.+|||||+|+|+++++|++.+|.||++||||+||++++++.+++.+.+ +.+|+|
T Consensus        84 ~~~~Pgp~T~Il~~~~~~~~~l~~~~~tigiRvP~~~~~~~L~~~~g~PL~~TSAN~sG~~~~~~~~~i~~~~~~~vd~i  163 (201)
T TIGR00057        84 KKFWPGPLTLVLKKTPEIPRRVSGKRKTIGIRVPDNPIALELLEELGKPIVATSANLSGKPSATDVEEAVDELGKLVDLI  163 (201)
T ss_pred             HhcCCCCeEEEEECCCCCCHhHcCCCCeEEEECCCCHHHHHHHHHhCCCEEECCCCCCCCCCCCCHHHHHHHhCCCccEE
Confidence            9999999999999999999999888899999999999999999999999999999999999999999987555 689999


Q ss_pred             EeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHHH
Q psy198          189 IDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILK  227 (245)
Q Consensus       189 vd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~~  227 (245)
                      +|+|++.  .+.+|||||++ ++.++|+|+|++++++.+
T Consensus       164 ld~g~~~--~~~~STVid~~-~~~~~ilR~G~~~~~i~~  199 (201)
T TIGR00057       164 IDAGPCL--GGEPSTIIDLT-DDTPKVLREGVGSEPIEK  199 (201)
T ss_pred             EcCCCCC--CCCCCcEEEcc-CCceEEEecCCCHHHHHH
Confidence            9999766  38999999998 788999999999854443

partial match to sua5, which is involved in regulation of translation initiation. 3' end of sua5 has matches to sua5, BS3690, and weakly to AF0781 and BB0734.

>PRK11630 hypothetical protein; Provisional

Probab=100.00  E-value=3e-56  Score=384.54  Aligned_cols=191  Identities=21%  Similarity=0.386  Sum_probs=175.2

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL  109 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~  109 (245)
                      ++++.+.+++|+++|++||+|+|||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++.+|+.+++..++++
T Consensus        10 ~~~~~~~i~~a~~~L~~G~vi~~PTdTvYgL~~d~~n~~Av~~l~~lK~R~~~Kpl~ll~~~~~~~~~~~~~~~~~~~l~   89 (206)
T PRK11630         10 DNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM   89 (206)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEeCCChHhhhcCCCCHHHHHHHHHHcCCCCCCCeEEEECCHHHHHHHhcCCHHHHHHH
Confidence            34566679999999999999999999999999999999999999999999999999999999999999998877788999


Q ss_pred             HhhCCCCEEEEecCCCcccc-ccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCC-CCCHHHHHh-hcCCcc
Q psy198          110 AELLPGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQK-LWSQLS  186 (245)
Q Consensus       110 ~~~wPGplTlIl~~~~~lp~-~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~-~~~~e~~~~-~~~~vd  186 (245)
                      ++|||||+|+|+++++.+|+ +++++.+|||||+|+|+++++|++.+|.||++||||+||+++ ..+.+++.+ +.+.+|
T Consensus        90 ~~~wPGplT~Il~a~~~~p~~~~~~~~~tigiRip~~~~~~~L~~~~g~PL~~TSAN~sG~~~~~~~~~~i~~~~~~~vd  169 (206)
T PRK11630         90 KNNTPGNYTFILKGTKEVPRRLLQEKRKTIGLRVPSNPIALALLEALGEPMLSTSLMLPGSDFTESDPEEIKDRLEKQVD  169 (206)
T ss_pred             HhcCCCCeEEEEECCCCCCHHHcCCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcCcCCCCCCCCCHHHHHHHhcCCce
Confidence            99999999999999999996 667778999999999999999999999999999999999876 588999865 446899


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHH
Q psy198          187 VVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDK  224 (245)
Q Consensus       187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~  224 (245)
                      +|+|+|.+.   +.||||||++ +++++|||+|++..+
T Consensus       170 ~ildg~~~~---~~pSTIvd~~-~~~~~ilR~G~~~~~  203 (206)
T PRK11630        170 LIIHGGYLG---QQPTTVIDLT-DDTPVVVREGVGDVK  203 (206)
T ss_pred             EEEeCCCCC---CCCCEEEEcc-CCceEEEecCCCchh
Confidence            999988764   6999999998 788999999998654

>PRK10634 tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; Provisional

Probab=100.00  E-value=1.9e-54  Score=369.01  Aligned_cols=182  Identities=27%  Similarity=0.406  Sum_probs=168.1

Q ss_pred             CCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc---cCchHHHH
Q psy198           32 TDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD---THTVSFEL  108 (245)
Q Consensus        32 ~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~---~~~~~~~l  108 (245)
                      ++.+.+++|+++|++||+|+|||||+|||+|++.|++||+|||++|+|+.+|||+++++|++++.+|+.   +++...++
T Consensus         5 ~~~~~i~~a~~~L~~G~vv~~PTdTvYgL~~~~~n~~Av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~~~~~~~~l   84 (190)
T PRK10634          5 LQGDAIAAAVDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDSMLTDAQRET   84 (190)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEeCCchhhhhcCCCCHHHHHHHHHHhCCCCCCCcEEEECCHHHHHHHHHhcCCCHHHHHH
Confidence            467789999999999999999999999999999999999999999999999999999999999999986   45666789


Q ss_pred             HHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCccE
Q psy198          109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLSV  187 (245)
Q Consensus       109 ~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd~  187 (245)
                      +++|||||+|+|+++++.+|++++++.+|||||+|+|+++++|++.+|.||++||||+||++++++.+++.+.| +.+| 
T Consensus        85 ~~~~wPGPlTlil~~~~~~p~~l~~~~~tigvRiP~~~~~~~ll~~~g~Pl~~TSAN~sG~~~~~~~~~i~~~~~~~v~-  163 (190)
T PRK10634         85 IFSCWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVEEVRAQFGAAFP-  163 (190)
T ss_pred             HHHhCCCCEEEEEECCCCCCHHHcCCCCeEEEECCCCHHHHHHHHHhCCcEEECCcccCCCCCCCCHHHHHHHhCCCcE-
Confidence            99999999999999999999999888999999999999999999999999999999999999999999987655 6788 


Q ss_pred             EEeCCCCCCCCCCCCeEEEEEeCCceEEEecC
Q psy198          188 VIDGGIISNPERFGSTIVDLSEENVYSIVRKG  219 (245)
Q Consensus       188 ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G  219 (245)
                      ++|+|....  +.||||||++ ++  +|||+|
T Consensus       164 i~dg~~~~~--~~pSTIvd~~-~~--~ilR~G  190 (190)
T PRK10634        164 VVPGETGGR--LNPSEIRDAL-TG--ELFRQG  190 (190)
T ss_pred             EEcCCCCCC--CCCCeEEECC-CC--eEEeCC
Confidence            578776653  7999999998 44  899998

>PF01300 Sua5_yciO_yrdC: Telomere recombination; InterPro: IPR006070 The YrdC family of hypothetical proteins are widely distributed in eukaryotes and prokaryotes and occur as: (i) independent proteins, (ii) with C-terminal extensions, and (iii) as domains in larger proteins, some of which are implicated in regulation []

Probab=100.00  E-value=1.6e-53  Score=359.75  Aligned_cols=175  Identities=40%  Similarity=0.648  Sum_probs=154.3

Q ss_pred             HHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc--cCchHHHHHHhhCCCCEEE
Q psy198           42 QCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD--THTVSFELLAELLPGPVTI  119 (245)
Q Consensus        42 ~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~--~~~~~~~l~~~~wPGplTl  119 (245)
                      |+|++||+|++||||+|||+|+++|++|++|||++|+|+.+|||+++++|++|+++|+.  +++...+++++|||||+|+
T Consensus         1 e~Lk~G~vvi~PTdT~ygl~~~~~n~~av~ri~~iK~R~~~Kpl~ll~~~~~~l~~~~~~~~~~~~~~l~~~~wPgp~t~   80 (179)
T PF01300_consen    1 EILKAGGVVIYPTDTVYGLGCDAFNPEAVERIYKIKQRPKNKPLILLVSSIEQLEEYVDSPVSPKARRLLEKFWPGPLTL   80 (179)
T ss_dssp             -HHHTT-EEEEEESSSEEEEEETTSHHHHHHHHHHHTSSTTS--EEEESSHHHHHHHEETT--HHHHHHHHHCHSSSEEE
T ss_pred             CccccCCEEEEECCCEEEEEEecCCHHHHHHHHHhhcccCCCCEEEEECCHHHHHHHhhccccHHHHHHHHhccccCeeE
Confidence            57999999999999999999999999999999999999999999999999999999997  6667788999999999999


Q ss_pred             EecCCCc-cccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHh-hcCCccEEEeCCCCCCC
Q psy198          120 VFNRSEH-LNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQK-LWSQLSVVIDGGIISNP  197 (245)
Q Consensus       120 Il~~~~~-lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~-~~~~vd~ivd~g~~~~~  197 (245)
                      |+++++. +|+.++++.+|||||+|+++++++|++.+|+||++||||+||+++..+.+++.+ +.+.+|+|+|+|...  
T Consensus        81 I~~~~~~~l~~~~~~~~~ti~vRip~~~~~~~l~~~~g~Pl~~TSAN~sg~~~~~~~~~i~~~~~~~vd~iv~~~~~~--  158 (179)
T PF01300_consen   81 ILPAKKENLPKYLTSKRGTIGVRIPDHPILRELLEALGGPLISTSANLSGEPPATDFEEIIERFGDKVDLIVDGGEIP--  158 (179)
T ss_dssp             EEEEGTTCSHHHHHTTTSEEEEECHCSHHHHHHHHHHTS-EEEEESSSTTSSCTTSHHHHHHHHTTTSSEEEECCHHS--
T ss_pred             eeccccccCChhhcCCCCeEEEEecChHHHHHHHHhcCCceEecccccccCCCCCCHHHHHHHhccCceEEEECCCCC--
Confidence            9998554 999998899999999999999999999999999999999999999999999865 447999999999665  


Q ss_pred             CCCCCeEEEEEeCCceEEEecC
Q psy198          198 ERFGSTIVDLSEENVYSIVRKG  219 (245)
Q Consensus       198 ~~~~STIVd~~~~~~~~ilR~G  219 (245)
                      ++.+|||||++ +++++|||+|
T Consensus       159 ~~~~STIvd~~-~~~~~ilR~G  179 (179)
T PF01300_consen  159 SGQPSTIVDLT-NGKPKILREG  179 (179)
T ss_dssp             SSS--EEEETT-SSSSEEEE--
T ss_pred             CCCCCeEEEee-CCceEEEeeC
Confidence            48999999999 8899999998

The YrdC protein, which consists solely of this domain, forms an alpha/beta twisted open-sheet structure composed of seven alpha helices and seven beta strands []. YrdC from Escherichia coli preferentially binds to double-stranded RNA and DNA. YrdC is predicted to be an rRNA maturation factor, as deletions in its gene lead to immature ribosomal 30S subunits and, consequently, fewer translating ribosomes []. Therefore, YrdC may function by keeping an rRNA structure needed for proper processing of 16S rRNA, especially at lower temperatures. Sua5 is an example of a multi-domain protein that contains an N-terminal YrdC-like domain and a C-terminal Sua5 domain. Sua5 was identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a translation initiation defect in the cytochrome c gene and is required for normal growth in yeast; however its exact function remains unknown []. HypF is involved in the synthesis of the active site of [NiFe]-hydrogenases [].; PDB: 3L7V_A 1KK9_A 1K7J_A 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A 2EQA_A ....

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=100.00  E-value=1.1e-39  Score=323.91  Aligned_cols=205  Identities=25%  Similarity=0.334  Sum_probs=175.4

Q ss_pred             CHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhh
Q psy198           33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL  112 (245)
Q Consensus        33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~  112 (245)
                      ..+.+++|+++|++||+|++||||+|||+|+++|++||+|||++|+|+ +|||++|++|++++++|+.+++...+++. .
T Consensus       161 ~~~~i~~aa~~L~~G~IVaipt~ggy~L~cda~n~~AV~rLr~~K~Rp-~KPlavmv~d~~~~~~~~~~~~~e~~lL~-~  238 (711)
T TIGR00143       161 QDDALLEAAKLLKKGKIIAIKGIGGFHLACDARNDEVVERLRLRKNRP-LKPFAVMSPDLESAEQHAELNNLECELLT-S  238 (711)
T ss_pred             chHHHHHHHHHHhCCCEEEEEcCCcceeecCCCCHHHHHHHHHHhCCC-CCCEEEEECCHHHHHHHhcCCHHHHHHHH-c
Confidence            357899999999999999999999999999999999999999999997 79999999999999999998776667774 5


Q ss_pred             CCCCEEEEecCCC--ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccEEE
Q psy198          113 LPGPVTIVFNRSE--HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVI  189 (245)
Q Consensus       113 wPGplTlIl~~~~--~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~iv  189 (245)
                      ||+|+++ +++++  .+++.++++.+|||||+|+||+++.|++.+|.||++||||+||+|+.++.+++. ++.+.+|+++
T Consensus       239 ~~~Pivl-l~~~~~~~l~~~v~~~~~tiGvrlP~~pl~~~Ll~~~g~PLv~TSAN~SGep~~~~~~e~~~~l~~~~D~~L  317 (711)
T TIGR00143       239 PAAPIVL-LRKKPDIKLAPNIAPNLPTIGVMLPYTPLHHLLLQLLAFPLVMTSANLPGLPMAIDNAEILDKLQGIADGFL  317 (711)
T ss_pred             CCCCEEE-EECCCCCCCChhhcCCCCEEEEEcCCCHHHHHHHHHcCCcEEECccCCCCCCCCCCHHHHHHHhcCCccEEE
Confidence            8999875 77765  578888888999999999999999999999999999999999999999999975 5567999988


Q ss_pred             eCCCCCCCCCCCCeEEEEEeCCceEEEecCCChH--HHHH-------HHHhCCccccCCcCC
Q psy198          190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD--KILK-------ILHKYHLVEKNTFPI  242 (245)
Q Consensus       190 d~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~--~~~~-------~l~~~~~~~~~~~~~  242 (245)
                      ++++.. ..+.+||||+++ ++++++||+|..+-  .+.-       .+=+.|-+++|+|.+
T Consensus       318 ~~~r~i-~~~~dsSVV~~~-~~~~~ilR~~RG~aP~~~~l~~~~~~~~vla~G~~lknt~~l  377 (711)
T TIGR00143       318 VHNRRI-VNRVDDSVVQHV-AGEILFLRRSRGFAPQPLTLPPNGNPKKILALGAELKNTFSL  377 (711)
T ss_pred             eCCCCc-CCCCCCceEEEE-CCeeEEEeccCCCCCcccccCCcCCCCcEEEechhhcceEEE
Confidence            877644 258999999998 88999999987542  2211       122567777777753

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>KOG3051|consensus

Probab=99.97  E-value=3.1e-31  Score=229.70  Aligned_cols=182  Identities=36%  Similarity=0.555  Sum_probs=161.4

Q ss_pred             HHHHHH-HHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCcccccccc--CchHHHHHHhhC
Q psy198           37 ALLAAQ-CLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT--HTVSFELLAELL  113 (245)
Q Consensus        37 i~~a~~-~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~--~~~~~~l~~~~w  113 (245)
                      ...|+. +-+.++.+++||||+||+++++.++.|+.+||+.|.|+..+|+++.+++..+++.....  +.....|++.+|
T Consensus        18 ~~~aa~~~r~~~~~va~pT~t~yg~g~~~~~~~av~~v~~~K~rP~~~pL~~~~~s~~~~~~v~~~~i~~~~~~L~~~l~   97 (261)
T KOG3051|consen   18 LYDAALIVRRTDKRVAFPTETVYGLGASAYNEVAVLRLYKLKNRPADNPLIVHVSSVDQLKRVVAINIPSLYLPLASYLW   97 (261)
T ss_pred             hhhhhhheeccCCceecCchhhhhhhhhhhccccchhhhhhhcCccccchhhccccHHHHHHHHhhcchhhhhHHHhhcC
Confidence            334444 45589999999999999999999999999999999999999999999999999886543  455567899999


Q ss_pred             CCCEEEEecCCC-ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCC-CCHHHHHhhcCCccEEEeC
Q psy198          114 PGPVTIVFNRSE-HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPST-LCINEFQKLWSQLSVVIDG  191 (245)
Q Consensus       114 PGplTlIl~~~~-~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~-~~~e~~~~~~~~vd~ivd~  191 (245)
                      |||+|++++... -+++.++.+..++|+|+|+|+++++||..++.|++.||||.|++++. ...++++.+++++++|+|+
T Consensus        98 PGPltlll~~~~~~l~~~~~~~~~svAvRiP~~~~a~~li~~~~~Pla~tSAN~Ssr~s~tlai~~~~Dl~~~i~lilDg  177 (261)
T KOG3051|consen   98 PGPLTLLLERADECLSKLTNPGLPSVAVRIPDHPVASALIPKLGVPLALTSANASSRPSPTLAIHVFADLQPKIPLILDG  177 (261)
T ss_pred             CCceEEEeecchhhccccccCCCcceeEEccCCHHHHHHHHHhCCCccccccccccCCCCcchhhhhhhhccchhheecC
Confidence            999999999988 48888888899999999999999999999999999999999999974 5677788888999999999


Q ss_pred             CCCCCCCCCCCeEEEEEeCCceEEEecCCC
Q psy198          192 GIISNPERFGSTIVDLSEENVYSIVRKGVC  221 (245)
Q Consensus       192 g~~~~~~~~~STIVd~~~~~~~~ilR~G~~  221 (245)
                      |.|..  ++.||+++.. .|...++|+|.+
T Consensus       178 G~c~~--g~~~~~~~g~-~~p~~i~~pgG~  204 (261)
T KOG3051|consen  178 GACGS--GVESTVVEGS-TDPVDILRPGGI  204 (261)
T ss_pred             ccccc--CcCceeeccc-cCcceeeccCCc
Confidence            99984  9999999998 777889998863

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.9e-25  Score=211.91  Aligned_cols=203  Identities=26%  Similarity=0.334  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhhCC
Q psy198           35 KAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELLP  114 (245)
Q Consensus        35 ~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~wP  114 (245)
                      +++.+|++.|+.|++|++..-.+|+|+|+++|++||++|++.|+|| .|||++|+.|++++++||.+++..++++..- -
T Consensus       198 ~ai~~a~klL~~G~IvAIKGiGGFhLaCda~~~eaV~~LR~rk~Rp-~KPFAvM~kdl~~i~~~a~~~~~E~~lL~S~-~  275 (750)
T COG0068         198 EAIRKAAKLLKVGKIVAIKGIGGFHLACDARNEEAVAKLRKRKNRP-LKPFAVMAKDLETIEEFAEVNDEEEELLTSP-S  275 (750)
T ss_pred             HHHHHHHHHHhhCCEEEEeecCceeeeecCCchHHHHHHHHhcCCC-CCCceeeeccHHHHHHhhccCHHHHHHhcCc-c
Confidence            3889999999999999999999999999999999999999999997 9999999999999999999988777776632 3


Q ss_pred             CCEEEEecCCCc--cccccCCCCCeEEEEecCcHHHHHHHH-HcCCCeeeccCCCCCCCCCCCHHHH-HhhcCCccEEEe
Q psy198          115 GPVTIVFNRSEH--LNLELNPNVTKVAVRIPDHKFLRQLLK-LMDSPLALTSANESNEPSTLCINEF-QKLWSQLSVVID  190 (245)
Q Consensus       115 GplTlIl~~~~~--lp~~l~~~~~tvgvRip~~~~~~~Li~-~~g~PL~sTSAN~SG~~~~~~~e~~-~~~~~~vd~ivd  190 (245)
                      .|++++ ++++.  ++..+.++.++|||++|.+|++.-|++ ....|++.||||+||+|...+.+++ .++.+-.|+++.
T Consensus       276 rPIVll-~Kk~~~~~~~~iAP~l~~iGVMLPYtpLhhLLl~~~~~~~~VmTSaNl~g~Pm~~dN~eal~kL~~IADyfL~  354 (750)
T COG0068         276 RPIVLL-KKKKVFLLESNIAPGLHTIGVMLPYTPLHHLLLQESLDIPYVMTSANLPGEPMAIDNEEALEKLKGIADYFLL  354 (750)
T ss_pred             CceEEe-ccccccccccccCCCCCCcceeecCCchhhhhhhhccCceEEEecCCCCCCCcccCCHHHHHHhhhhhheeee
Confidence            578765 54443  456688889999999999999999998 7788999999999999988877774 567778999998


Q ss_pred             CCCCCCCCCCCCeEEEEEeCCceEEEecC--CChHHHHHH------HHhCCccccCCcCC
Q psy198          191 GGIISNPERFGSTIVDLSEENVYSIVRKG--VCYDKILKI------LHKYHLVEKNTFPI  242 (245)
Q Consensus       191 ~g~~~~~~~~~STIVd~~~~~~~~ilR~G--~~~~~~~~~------l~~~~~~~~~~~~~  242 (245)
                      +.+.. .+....+||++. +|...+||+-  ..++.+.-.      +=..|-++.|+|.+
T Consensus       355 HNR~I-~~r~DDSVVrvV-~g~~~~iRrSRGy~P~pi~lp~~~~~~ila~GaelknTf~l  412 (750)
T COG0068         355 HNREI-VNRCDDSVVRVV-AGRIAFIRRSRGYAPKPIELPFNNVKKILALGAELKNTFCL  412 (750)
T ss_pred             ccccc-ccccCCcceeEe-CCceeeeehhcCCCCcceecCCCCccceeeecccccceEEE
Confidence            87655 368999999998 8999999985  455544432      23667788888864

>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=4.7e-05  Score=73.85  Aligned_cols=146  Identities=21%  Similarity=0.241  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHcCCeEE-EecCcEEE--------EeccCCChHHHHHHHHHhC-CCCCCCcEEEeCCcCccccccccCchH
Q psy198           36 AALLAAQCLKKGCVVA-LPTDTLYG--------LACDATNSKAINILYEIKK-RDVNKPLAICVSEITDIPKWADTHTVS  105 (245)
Q Consensus        36 ~i~~a~~~L~~GgvVi-~PTdTvYg--------L~a~a~n~~Av~rI~~iK~-R~~~Kpl~ll~~s~~~l~~~~~~~~~~  105 (245)
                      -.+.+++.|.+|++|. +...--||        |.++|.++...+||+...+ |+.-+||+-.+-+ |.+.+|.      
T Consensus       379 l~~~va~~LadgkvVgwfqGRmEfGPRALGnRSILadPr~~~~kd~iN~~vK~Re~FrPFAPsiL~-E~~~~~f------  451 (555)
T COG2192         379 LPDRVAELLADGKVVGWFQGRMEFGPRALGNRSILADPRDPGMKDKINLKVKFREGFRPFAPSILE-EDVERYF------  451 (555)
T ss_pred             HHHHHHHHHhCCCeEEEEeeccccCccccCCceeecCCCChHHHHHHHHHhcccCccCCcCcchhh-hhhhHHh------
Confidence            5789999999999998 89999998        8899999999999996555 9999999877643 4555553      


Q ss_pred             HHHHHhhCCCC-EEEEecCCCc----ccccc--CCCCCeEEEEecCcHHHHHHHHHc----CCC-eeeccCCCCCCCCCC
Q psy198          106 FELLAELLPGP-VTIVFNRSEH----LNLEL--NPNVTKVAVRIPDHKFLRQLLKLM----DSP-LALTSANESNEPSTL  173 (245)
Q Consensus       106 ~~l~~~~wPGp-lTlIl~~~~~----lp~~l--~~~~~tvgvRip~~~~~~~Li~~~----g~P-L~sTSAN~SG~~~~~  173 (245)
                          +.--|.| .|++++.++.    +|..+  .+....--|+=-.+|....||+++    |.| ++.||-|..|+|-.-
T Consensus       452 ----e~~~~sPyM~~~~~~~~~~r~~lpaV~HvDgTaR~QtV~r~~nP~y~~ll~aF~~~TG~gvllNTSFN~~GEPIVc  527 (555)
T COG2192         452 ----ELPSPSPYMTLVFRVREEFRERLPAVTHVDGTARPQTVRRDANPRYYGLLRAFKERTGVGVLLNTSFNVHGEPIVC  527 (555)
T ss_pred             ----hCCCCCCceeeeehhhHHHHhhCCceEeecCCccceeeccccChhHHHHHHHHHHhcCCcEEEecccccCCCceec
Confidence                3224566 6677776543    55533  222233445666778888988864    667 669999999999888


Q ss_pred             CHHHHHhhc--CCccEEEeCC
Q psy198          174 CINEFQKLW--SQLSVVIDGG  192 (245)
Q Consensus       174 ~~e~~~~~~--~~vd~ivd~g  192 (245)
                      +++++...|  ..+|..+-++
T Consensus       528 sp~DA~~~f~~t~~d~Lvi~~  548 (555)
T COG2192         528 SPADAIRTFLSTGLDALVLED  548 (555)
T ss_pred             CHHHHHHHHHhCCCcEEEEcC
Confidence            888875544  4788776544

>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []

Probab=92.55  E-value=0.1  Score=48.89  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHcCCeEE-EecCcEEE--------EeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCcccccccc
Q psy198           36 AALLAAQCLKKGCVVA-LPTDTLYG--------LACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADT  101 (245)
Q Consensus        36 ~i~~a~~~L~~GgvVi-~PTdTvYg--------L~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~  101 (245)
                      ..++++++|.+|+||. +..-.-||        |.|+|.+++..++|.+.|||+...||+-.+- .|.+.+|.+.
T Consensus       253 ~~~~~A~lLa~gkiVgwfqGr~EfGPRALGnRSILAdP~~~~~~d~iN~~iKRE~fRPfAPsvl-~E~a~~~f~~  326 (360)
T PF02543_consen  253 LAEQVAELLADGKIVGWFQGRMEFGPRALGNRSILADPRSPDMKDRINRRIKREWFRPFAPSVL-EEDAEEYFEL  326 (360)
T ss_dssp             HHHHHHHHHHTT--EEEE-SS-B-SSS--SSEEEEEESS-SSHHHHHHHTTS--TT---EEEEE-HHHHHHHBSS
T ss_pred             HHHHHHHHHHcCCEEEEEecCccccCccccccccccCCCChHHHHHHhhhcCccccCCcCcchh-HHHHHHhccC
Confidence            7789999999999998 88888888        8999999999999999999999999998885 4777888654

The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
1jcu_A	208	Solution Structure Of Mth1692 Protein From Methanob		3e-22
3aje_A	352	Crystal Structure Of S. Tokodaii Sua5 Complexed Wit		1e-15
2eqa_A	352	Crystal Structure Of The Hypothetical Sua5 Protein		2e-15
1hru_A	188	The Structure Of The Yrdc Gene Product From E.Coli		8e-12
1kk9_A	221	Crystal Structure Of E. Coli Ycio Length = 221		1e-06
1k7j_A	206	Structural Genomics, Protein Tf1 Length = 206		1e-06
3vth_A	761	Crystal Structure Of Full-Length Hypf In The Phosph		2e-04
3tsp_A	657	Crystal Structure Of E. Coli Hypf Length = 657		2e-04
3tsq_A	658	Crystal Structure Of E. Coli Hypf With Atp And Carb		2e-04

>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From Methanobacterium Thermoautotrophicum Length = 208

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 100/173 (57%), Gaps = 5/173 (2%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G +V  PTDT+YGL  +A +  A+  L+ +K R  +KP++ICVS + +IP+++     + 
Sbjct: 26  GGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAM 85
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
           EL+  +LPGP T+V  R+E +   +    ++V +R+PD +  R++      P+  TSAN 
Sbjct: 86  ELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANI 143
Query: 167 SNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKG 219
           S +P +  + E  +    + +V+D G   + E   ST++DL+  N   ++R+G
Sbjct: 144 SGKPPSPRLEEIVRDLDAVDLVLDAGDCLDME--PSTVIDLT-VNPPRVLRRG 193

>pdb|3AJE|A Chain A, Crystal Structure Of S. Tokodaii Sua5 Complexed With L-Threonine And Amppnp Length = 352

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 79/148 (53%), Gaps = 2/148 (1%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
           G  VA PT+T+YGL  +A +  A   +++ K R V+ PL + +++   + + A D     
Sbjct: 27  GGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKV 86
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
            E+   + PGP+T V  ++E +  E+   +  VAVR+P H    QL++    P+A  SAN
Sbjct: 87  LEIAQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSAN 146
Query: 166 ESNEPS-TLCINEFQKLWSQLSVVIDGG 192
            +  PS T   +    L  ++ V+IDGG
Sbjct: 147 LATRPSPTKAEDVIVDLNGRVDVIIDGG 174

>pdb|2EQA|A Chain A, Crystal Structure Of The Hypothetical Sua5 Protein From Sulfolobus Tokodaii Length = 352

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 78/148 (52%), Gaps = 2/148 (1%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVS 105
           G  VA PT+T+YGL  +A +  A   +++ K R V+ PL + +++   + + A D     
Sbjct: 27  GGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKV 86
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
            E+   + PGP+T V  ++E +  E+   +  VAVR P H    QL++    P+A  SAN
Sbjct: 87  LEIAQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRXPAHPIALQLIRESGVPIAAPSAN 146
Query: 166 ESNEPS-TLCINEFQKLWSQLSVVIDGG 192
            +  PS T   +    L  ++ V+IDGG
Sbjct: 147 LATRPSPTKAEDVIVDLNGRVDVIIDGG 174

>pdb|1HRU|A Chain A, The Structure Of The Yrdc Gene Product From E.Coli Length = 188

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 3/146 (2%)
Query: 49  VVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHT---VS 105
           V+A PT+ ++G+ CD  +  A+  L E+K+R V+K L +  +    +  + D      V 
Sbjct: 22  VIAYPTEAVFGVGCDPDSETAVXRLLELKQRPVDKGLILIAANYEQLKPYIDDTXLTDVQ 81
Query: 106 FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
            E +    PGPVT VF         L      +AVR+ DH  +  L +    PL  TSAN
Sbjct: 82  RETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSAN 141
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDG 191
            S  P    ++E +  +     V+ G
Sbjct: 142 LSGLPPCRTVDEVRAQFGAAFPVVPG 167

>pdb|1KK9|A Chain A, Crystal Structure Of E. Coli Ycio Length = 221

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G V+  PTD+ Y L C   +  A   +  I++        +   +++++  ++    V+F
Sbjct: 42  GGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTYSFVDNVAF 101
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK-VAVRIPDHKFLRQLLKLMDSPLALTS-- 163
            L     PG  T +   ++ +   L     K +  R+P +   + LL+ +  P   TS  
Sbjct: 102 RLXKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGXRVPSNPIAQALLEALGEPXLSTSLX 161
Query: 164 --ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV 220
              +E  E     I +  +L  Q+ ++I GG +       +T++DL+++    +VR+GV
Sbjct: 162 LPGSEFTESDPEEIKD--RLEKQVDLIIHGGYLGQKP---TTVIDLTDDTPV-VVREGV 214

>pdb|1K7J|A Chain A, Structural Genomics, Protein Tf1 Length = 206

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 80/179 (44%), Gaps = 11/179 (6%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G V+  PTD+ Y L C   +  A   +  I++        +   +++++  ++    V+F
Sbjct: 27  GGVIVYPTDSGYALGCKIEDKNAXERICRIRQLPDGHNFTLXCRDLSELSTYSFVDNVAF 86
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTK-VAVRIPDHKFLRQLLKLMDSPLALTS-- 163
            L     PG  T +   ++ +   L     K +  R+P +   + LL+ +  P   TS  
Sbjct: 87  RLXKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGXRVPSNPIAQALLEALGEPXLSTSLX 146
Query: 164 --ANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGV 220
              +E  E     I +  +L  Q+ ++I GG +       +T++DL+++    +VR+GV
Sbjct: 147 LPGSEFTESDPEEIKD--RLEKQVDLIIHGGYLGQKP---TTVIDLTDDTPV-VVREGV 199

>pdb|3VTH|A Chain A, Crystal Structure Of Full-Length Hypf In The Phosphate- And Nucleotide-Bound Form Length = 761

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G +VA+     + LA +A + +A+  L   KKR   KP A+ + ++ ++ K+        
Sbjct: 215 GKIVAIKGIGGFHLAVNALDDEAVATLRRRKKR-YGKPFAVMMRDVEEVKKYCIVSPEEE 273
Query: 107 ELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANE 166
            LL      P+ ++  + E L   +  ++  + V +P       L++ +D P+ +TS N 
Sbjct: 274 RLLLSQRR-PIVLLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNV 332
Query: 167 SNEP 170
           S EP
Sbjct: 333 SEEP 336

>pdb|3TSP|A Chain A, Crystal Structure Of E. Coli Hypf Length = 657

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G +VA+     + LACDA NS A+  L   K R   KPLA+ +     +P  A       
Sbjct: 124 GNIVAIKGIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADGLPDAA------- 175
Query: 107 ELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
             L      P+ +V  +    L  ++ P + +V V +P +     LL+ +  PL +TS N
Sbjct: 176 RQLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGN 235
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNP---ERFGSTIVDLSEE 210
            S +P    I+  Q L   L  + DG +I N    +R   ++V  S E
Sbjct: 236 LSGKPPA--ISNEQAL-EDLQGIADGFLIHNRDIVQRMDDSVVRESGE 280

>pdb|3TSQ|A Chain A, Crystal Structure Of E. Coli Hypf With Atp And Carbamoyl Phosphate Length = 658

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 47  GCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSF 106
           G +VA+     + LACDA NS A+  L   K R   KPLA+ +     +P  A       
Sbjct: 124 GNIVAIKGIGGFHLACDARNSNAVATLRARKHRPA-KPLAVMLPVADGLPDAA------- 175
Query: 107 ELLAELLPGPVTIVFNRS-EHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSAN 165
             L      P+ +V  +    L  ++ P + +V V +P +     LL+ +  PL +TS N
Sbjct: 176 RQLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGN 235
Query: 166 ESNEPSTLCINEFQKLWSQLSVVIDGGIISNP---ERFGSTIVDLSEE 210
            S +P    I+  Q L   L  + DG +I N    +R   ++V  S E
Sbjct: 236 LSGKPPA--ISNEQAL-EDLQGIADGFLIHNRDIVQRMDDSVVRESGE 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	3e-49
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	1e-46
1hru_A	188	YRDC gene product; protein folding, structural gen	2e-40
2eqa_A	352	Hypothetical protein ST1526; YRDC/RIBB fold, YRDC	6e-37
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	1e-31
3l7v_A	295	Putative uncharacterized protein SMU.1377C; transc	1e-28
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	6e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A Length = 206

 Score =  159 bits (406), Expect = 3e-49
 Identities = 42/202 (20%), Positives = 91/202 (45%), Gaps = 11/202 (5%)

Query: 25  MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
           M     +   +P+  L+  A + ++KG V+  PTD+ Y L C   +  A+  +  I++  
Sbjct: 1   MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 60

Query: 81  VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHL-NLELNPNVTKVA 139
                 +   +++++  ++    V+F L+    PG  T +   ++ +    L      + 
Sbjct: 61  DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 120

Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE--FQKLWSQLSVVIDGGIISNP 197
           +R+P +   + LL+ +  P+  TS        T    E    +L  Q+ ++I GG +   
Sbjct: 121 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 180

Query: 198 ERFGSTIVDLSEENVYSIVRKG 219
               +T++DL+++    +VR+G
Sbjct: 181 P---TTVIDLTDD-TPVVVREG 198

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1 Length = 208

 Score =  153 bits (388), Expect = 1e-46
 Identities = 58/202 (28%), Positives = 103/202 (50%), Gaps = 21/202 (10%)

Query: 28  IVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
           I K+T     P     A   ++ G +V  PTDT+YGL  +A +  A+  L+ +K R  +K
Sbjct: 3   IRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHK 62

Query: 84  PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
           P++ICVS + +IP+++     + EL+  +LPGP T+V  R+E +   +    ++V +R+P
Sbjct: 63  PVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVP 122

Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPS----TLCINEFQKLWSQLSVVIDGGIISNPER 199
           D +  R++      P+  TSAN S +P        + +       + +V+D G       
Sbjct: 123 DDEICRRIAA--RFPVTATSANISGKPPSPRLEEIVRDLDA----VDLVLDAG----DCL 172

Query: 200 FG--STIVDLSEENVYSIVRKG 219
               ST++DL+      ++R+G
Sbjct: 173 DMEPSTVIDLTVNPP-RVLRRG 193

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1 Length = 188

 Score =  136 bits (345), Expect = 2e-40
 Identities = 50/188 (26%), Positives = 77/188 (40%), Gaps = 15/188 (7%)

Query: 33  DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEI 92
              A   A   L +  V+A PT+ ++G+ CD  +  A+  L E+K+R V+K L +  +  
Sbjct: 6   QRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANY 65

Query: 93  TDIPKWADTHTVS---FELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
             +  + D   ++    E +    PGPVT VF         L      +AVR+ DH  + 
Sbjct: 66  EQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVV 125

Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLS---VVIDGGI--ISNPERFGSTI 204
            L +    PL  TSAN S  P         ++ +Q      V+ G      NP    S I
Sbjct: 126 ALCQAYGKPLVSTSANLSGLPP---CRTVDEVRAQFGAAFPVVPGETGGRLNP----SEI 178

Query: 205 VDLSEENV 212
            D     +
Sbjct: 179 RDALTGEL 186

>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A* Length = 352

 Score =  131 bits (333), Expect = 6e-37
 Identities = 61/207 (29%), Positives = 104/207 (50%), Gaps = 21/207 (10%)

Query: 25  MCSIVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
           M  I+K+     +     +AA  ++ G  VA PT+T+YGL  +A +  A   +++ K R 
Sbjct: 1   MTQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRP 60

Query: 81  VNKPLAICVSEITDIPKWADTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVT--- 136
           V+ PL + +++   + + A         +A+++ PGP+T V  ++E     +   VT   
Sbjct: 61  VDNPLIVHIADFNQLFEVAKDIPDKVLEIAQIVWPGPLTFVLKKTER----VPKEVTAGL 116

Query: 137 -KVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQKLWSQLSVVIDGGII 194
             VAVR+P H    QL++    P+A  SAN +  PS T   +    L  ++ V+IDGG  
Sbjct: 117 DTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDVIIDGG-- 174

Query: 195 SNPERFG--STIVDLSEENVYSIVRKG 219
                FG  STI++++ E    ++R G
Sbjct: 175 --HTFFGVESTIINVTVEPP-VLLRPG 198

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A Length = 761

 Score =  121 bits (306), Expect = 1e-31
 Identities = 44/213 (20%), Positives = 91/213 (42%), Gaps = 15/213 (7%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
            A+ LK+G +VA+     + LA +A + +A+  L   KKR   KP A+ + ++ ++ K+ 
Sbjct: 208 VAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYC 266

Query: 100 DTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPL 159
                   LL      P+ ++  + E L   +  ++  + V +P       L++ +D P+
Sbjct: 267 IVSPEEERLLLSQ-RRPIVLLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPI 325

Query: 160 ALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPE---RFGSTIVDLSEENVYSIV 216
            +TS N S EP      + ++   +L  + D  +++N +   R   ++   +      I 
Sbjct: 326 VMTSGNVSEEPI---CKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTSFNAGAERIIR 382

Query: 217 RKGVCYDKILKILHKYHLV-------EKNTFPI 242
           R      + + +  +            KNTF +
Sbjct: 383 RARGYAPQPILLKKEVKASILAVGGFYKNTFCM 415

>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans} Length = 295

 Score =  108 bits (271), Expect = 1e-28
 Identities = 34/249 (13%), Positives = 78/249 (31%), Gaps = 45/249 (18%)

Query: 24  KMCSIVKVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
            M   +      +         +G V+  PT   Y +    ++ K +   +E KKR+ NK
Sbjct: 34  SMTKHIHWDGNLSQEGFEIVKGEGGVIVCPTKVGYIIM--TSDKKGLERKFEAKKRNRNK 91

Query: 84  PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVF---NRSEHLNLELNPNVTK--- 137
           P  +    + ++   A           +     + +      ++E           +   
Sbjct: 92  PGVVLCGSMEELRALAQLTPEIDAFYQKHWDEDILLGCILPWKAEAYEKLKAYGDGREEL 151

Query: 138 -----------VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE-FQKLWSQL 185
                      +   +   +  +++ +     +  +SAN S + +   +    +++ S +
Sbjct: 152 MTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGNRGKVEGIGERIESMV 211

Query: 186 SVVIDGGIISNPERFGSTIVDLSEENVYS-------------------------IVRKGV 220
            +VI+        +   TI    E+ V                           ++RKG+
Sbjct: 212 DLVIEADDYVASIQPDKTIETRYEQGVMVSMVDKDGKLIPQQGADSRSVEPCPVVIRKGL 271

Query: 221 CYDKILKIL 229
             DKI+  L
Sbjct: 272 DIDKIMMHL 280

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A Length = 657

 Score =  104 bits (262), Expect = 6e-26
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 10/162 (6%)

Query: 30  KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICV 89
                 A   A   LK G +VA+     + LACDA NS A+  L   K R   KPLA+ +
Sbjct: 107 HAEQEAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVML 165

Query: 90  SEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLR 149
                +P  A       +LL       V +       L  ++ P + +V V +P +    
Sbjct: 166 PVADGLPDAAR------QLLTTPAAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQH 219

Query: 150 QLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDG 191
            LL+ +  PL +TS N S +P    I+  ++    L  + DG
Sbjct: 220 LLLQELQCPLVMTSGNLSGKPP--AISN-EQALEDLQGIADG 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 35/168 (20%), Positives = 63/168 (37%), Gaps = 50/168 (29%)

Query: 85  LAICVS-EITDIPKWA-DTHTVSFELLAELL-PGPVTIVFNRSEHLNLELNPNVTKVAVR 141
           L   +     D+P+    T+     ++AE +  G  T  ++  +H+N +           
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT--WDNWKHVNCD----------- 353

Query: 142 IPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFG 201
                   +L  +++S L         EP      E++K++ +LSV      I  P    
Sbjct: 354 --------KLTTIIESSL------NVLEP-----AEYRKMFDRLSVFPPSAHI--PT--- 389

Query: 202 STIVDLSEENVYSIVRKGVCYDKILKILHKYHLVEKN----TFPIPVL 245
             +  +  + + S V        ++  LHKY LVEK     T  IP +
Sbjct: 390 ILLSLIWFDVIKSDVMV------VVNKLHKYSLVEKQPKESTISIPSI 431

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
1k7j_A	206	Protein YCIO, protein TF1; structural genomics, X-	100.0
2eqa_A	352	Hypothetical protein ST1526; YRDC/RIBB fold, YRDC	100.0
1jcu_A	208	Conserved protein MTH1692; mixed alpha-beta struct	100.0
1hru_A	188	YRDC gene product; protein folding, structural gen	100.0
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	100.0
3l7v_A	295	Putative uncharacterized protein SMU.1377C; transc	100.0
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	100.0
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	100.0
3ven_A	576	O-carbamoyltransferase TOBZ; antibiotic biosynthes	98.37

>1k7j_A Protein YCIO, protein TF1; structural genomics, X-RAY crystallography, putative translation factor, PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: d.115.1.1 PDB: 1kk9_A

Probab=100.00  E-value=4.2e-54  Score=369.86  Aligned_cols=190  Identities=21%  Similarity=0.388  Sum_probs=175.8

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL  109 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~  109 (245)
                      ++++.+.+++|+++|++||+|+|||||+|||+|+|+|++||+|||++|+|+.+|||+++++|++++++|+++++..++++
T Consensus        10 ~~~~~~~i~~a~~~L~~G~iva~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~ll   89 (206)
T 1k7j_A           10 DNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLM   89 (206)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHhcCCHHHHHHH
Confidence            55678889999999999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             HhhCCCCEEEEecCCCcccc-ccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCC-CCCHHHHHh-hcCCcc
Q psy198          110 AELLPGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEFQK-LWSQLS  186 (245)
Q Consensus       110 ~~~wPGplTlIl~~~~~lp~-~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~-~~~~e~~~~-~~~~vd  186 (245)
                      +++||||+|+|+++++.+|+ .++++.+|||||+|+||++++|++.+|.||++||||+||+++ .++.+++.+ +.+.+|
T Consensus        90 ~~~~PGp~T~il~~~~~~p~~~~~~~~~tvgvR~P~~p~~~~Ll~~~g~Pl~~TSAN~sG~~~p~~~~~~~~~~l~~~vd  169 (206)
T 1k7j_A           90 KNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVD  169 (206)
T ss_dssp             HTSCSSSEEEEEEBCTTSCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHHHHHHTTTCS
T ss_pred             HcCCCCCeEEEEECCCCCCHHHcCCCCCeEEEEecCCHHHHHHHHHhCCceEECCcccCCCCCCCCCHHHHHHHhCCCCc
Confidence            99999999999999999998 566688999999999999999999999999999999999975 689999865 557899


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChH
Q psy198          187 VVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD  223 (245)
Q Consensus       187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~  223 (245)
                      +|+|+|.+.   ..+|||||++ ++.+++||+|.++.
T Consensus       170 ~ild~g~~~---~~~STVvd~~-~~~~~ilR~G~g~~  202 (206)
T 1k7j_A          170 LIIHGGYLG---QKPTTVIDLT-DDTPVVVREGVGDV  202 (206)
T ss_dssp             EEEECCCCC---SCCCEEEECG-GGCCEEEECCSSCS
T ss_pred             EEEeCCCCC---CCCCeEEEee-CCcEEEEEeCCCCh
Confidence            999998665   6899999998 77899999999754

>2eqa_A Hypothetical protein ST1526; YRDC/RIBB fold, YRDC domain, SUA5 domain, structural genomics, NPPSFA; HET: AMP; 1.80A {Sulfolobus tokodaii} PDB: 3aje_A* 4e1b_A*

Probab=100.00  E-value=7.7e-54  Score=393.46  Aligned_cols=197  Identities=29%  Similarity=0.451  Sum_probs=182.0

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCcccccc-ccCchHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA-DTHTVSFEL  108 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~-~~~~~~~~l  108 (245)
                      ++++.+.+++|+++|++||+|+|||||+|||+|+++|++||+|||++|+|+.+|||+++++|++++.+|+ .+++..+++
T Consensus        10 ~~~~~~~i~~aa~~L~~G~iVa~PTeTvYGLg~da~n~~AV~rI~~~K~Rp~~kPliv~v~d~~~l~~~~~~i~~~~~~L   89 (352)
T 2eqa_A           10 LNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAKDIPDKVLEI   89 (352)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCEEECCSSSCEEEEETTCHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHEESCCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHcCCEEEEECCCEeEEEEeCCCHHHHHHHHHHcCCCCCCCEEEEECCHHHHHHHHHhCCHHHHHH
Confidence            4567889999999999999999999999999999999999999999999999999999999999999999 788888899


Q ss_pred             HHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccE
Q psy198          109 LAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSV  187 (245)
Q Consensus       109 ~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~  187 (245)
                      +++|||||+|||+|+++.+|+.++++.+|||||+|+||++++|++.+|.||++||||+||++++++.+++. ++.+.+|+
T Consensus        90 l~~fwPGPlTlIlp~~~~lp~~v~~g~~tvgvRvP~~p~~~~Ll~~~g~PL~atSAN~SG~p~~t~~~~v~~~l~~~vd~  169 (352)
T 2eqa_A           90 AQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVIVDLNGRVDV  169 (352)
T ss_dssp             HHHHCSSSEEEEEEECTTSCHHHHTTCSEEEEECCCCHHHHHHHHHHTSCEEECBSSCTTSCCCCSHHHHHHHHTTTSSE
T ss_pred             HHhCCCCCEEEEEECCCcCCHhHcCCCCeEEEEccCcHHHHHHHHHhCCcEEECccccCCCCCCCCHHHHHHHhcCcCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999975 45579999


Q ss_pred             EEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHHHHH
Q psy198          188 VIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDKILKIL  229 (245)
Q Consensus       188 ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~~~l  229 (245)
                      |+|+|++.  .+.+|||||++ ++.+++||+|.+..+.++.+
T Consensus       170 iLdgg~~~--~g~~STVvd~~-~~~~~iLR~G~i~~e~i~~~  208 (352)
T 2eqa_A          170 IIDGGHTF--FGVESTIINVT-VEPPVLLRPGPFTIEELKKL  208 (352)
T ss_dssp             EEECCCCS--SCSCCEEEECS-CCC-EEEECCSSCHHHHHHH
T ss_pred             EecCCccC--CCCCCeeEECC-CCceEEEcCCCCCHHHHHHH
Confidence            99999976  38999999998 77899999999866555443

>1jcu_A Conserved protein MTH1692; mixed alpha-beta structure, structural genomics; NMR {Methanothermobacterthermautotrophicus} SCOP: d.115.1.1

Probab=100.00  E-value=7.7e-54  Score=368.76  Aligned_cols=190  Identities=31%  Similarity=0.532  Sum_probs=177.4

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL  109 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~  109 (245)
                      ++++.+.+++|+++|++||+|+|||||+|||+|+|+|++|++|||++|+|+.+|||+++++|++++.+|+++++..++++
T Consensus         9 ~~~~~~~i~~a~~~L~~G~vVa~pTdtvygL~~da~n~~Av~rl~~~K~R~~~kPl~v~v~~~~~~~~~~~~~~~~~~ll   88 (208)
T 1jcu_A            9 KNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAMELM   88 (208)
T ss_dssp             SCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEECCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCEEEEEEeCCCHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHH
Confidence            45577889999999999999999999999999999999999999999999999999999999999999999888888999


Q ss_pred             HhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhcCCccEEE
Q psy198          110 AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVI  189 (245)
Q Consensus       110 ~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~~~vd~iv  189 (245)
                      ++|||||+|+|+|+++.+|+.++++.+|||||+|+||++++|++.+  ||++||||+||++++++.+++.+.++.+|+++
T Consensus        89 ~~~wPgp~T~il~~~~~~p~~v~~~~~tvgvR~P~~p~~~~Ll~~~--Pl~~TSAN~sG~p~~~~~~~~~~~l~~vd~il  166 (208)
T 1jcu_A           89 ERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLDAVDLVL  166 (208)
T ss_dssp             HHSCSSSEEEEEEECSCCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHHHHSSSSEECC
T ss_pred             HhcCCCCeEEEEeCCccCCHhhcCCCCeEEEEeCCCHHHHHHHHHh--HHHccCcccCCCCCCCCHHHHHHHhCcCCEEE
Confidence            9999999999999999999999999999999999999999999999  99999999999999999999865448899999


Q ss_pred             eCCCCCCCCCCCCeEEEEEeCCceEEEecCCChHH
Q psy198          190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYDK  224 (245)
Q Consensus       190 d~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~  224 (245)
                      |+|++.  .+.+|||||++ ++++++||+|.++.+
T Consensus       167 d~g~~~--~~~~STVvd~~-~~~~~ilR~G~~~~~  198 (208)
T 1jcu_A          167 DAGDCL--DMEPSTVIDLT-VNPPRVLRRGKGPLD  198 (208)
T ss_dssp             SSCCCS--CSCCCEEECCC-SSSCCEEECCCSSCC
T ss_pred             eCCCcc--CCCCCEEEEee-CCcEEEEecCCCCHH
Confidence            999765  38899999998 778999999998653

>1hru_A YRDC gene product; protein folding, structural genomics, RNA, SUA5, PSI, protein structure initiative, midwest center for structural genomics; 2.00A {Escherichia coli} SCOP: d.115.1.1

Probab=100.00  E-value=6.7e-52  Score=351.47  Aligned_cols=181  Identities=28%  Similarity=0.392  Sum_probs=166.4

Q ss_pred             CCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc---cCchHHH
Q psy198           31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD---THTVSFE  107 (245)
Q Consensus        31 ~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~---~~~~~~~  107 (245)
                      +++.+.+++|+++|++||+|+|||||+|||+|+|+|++|++|||++|+|+.+|||+++++|++++.+|+.   +++..++
T Consensus         4 ~~~~~~i~~a~~~L~~G~iva~ptdt~ygL~~da~~~~av~rl~~~K~R~~~kPl~v~~~~~~~~~~~~~~~~~~~~~~~   83 (188)
T 1hru_A            4 NLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRE   83 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEeCCCEeeeEEcCCCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHHhhcCCCHHHHH
Confidence            3456789999999999999999999999999999999999999999999999999999999999999998   7777778


Q ss_pred             HHHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCcc
Q psy198          108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLS  186 (245)
Q Consensus       108 l~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd  186 (245)
                      +++++||||+|+|+++++.+|+.++++.+|||||+|+||++++|++.+|.||++||||+||++++++.+++.+.+ +.+ 
T Consensus        84 ~~~~~~pgP~tlil~~~~~~p~~v~~~~~tvgvR~p~~p~~~~Ll~~~g~Pl~~TSaN~sG~p~~~~~~~~~~~l~~~v-  162 (188)
T 1hru_A           84 TIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAF-  162 (188)
T ss_dssp             HHHTTCSSSEEEEEECCTTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHHHHHCTTS-
T ss_pred             HHHhCCCCCEEEEEECCCCCCHhHcCCCCeEEEEcCCCHHHHHHHHHhCCeEEEccCCCCCCCCCCCHHHHHHHhCCCE-
Confidence            999999999999999999999999988999999999999999999999999999999999999999999986544 678 


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEEeCCceEEEe
Q psy198          187 VVIDGGIISNPERFGSTIVDLSEENVYSIVR  217 (245)
Q Consensus       187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR  217 (245)
                      +|+|+|.+..  +.+|||||++ ++  +|||
T Consensus       163 ~ildgg~~~~--~~~STIvd~~-~~--~ilR  188 (188)
T 1hru_A          163 PVVPGETGGR--LNPSEIRDAL-TG--ELFR  188 (188)
T ss_dssp             CBCCCCCCSS--CCCCEEEETT-TS--SBCC
T ss_pred             EEEeCCCCCC--CCCCeEEECc-CC--EEEC
Confidence            8889887663  7899999998 54  6766

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=100.00  E-value=1e-43  Score=353.61  Aligned_cols=204  Identities=23%  Similarity=0.294  Sum_probs=181.1

Q ss_pred             CHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhh
Q psy198           33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL  112 (245)
Q Consensus        33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~  112 (245)
                      ..+.+++|+++|++||+|++||||+|||+|+|+|++||+|||++|+|+ +|||++|++|++++++|+++++..+++++. 
T Consensus       201 ~~~~i~~aa~~L~~G~IVa~pt~t~YgL~cda~n~~AV~rL~~~K~Rp-~KPl~vmv~dl~~l~~~~~v~~~~~~ll~~-  278 (761)
T 3vth_A          201 FDDEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRY-GKPFAVMMRDVEEVKKYCIVSPEEERLLLS-  278 (761)
T ss_dssp             CSCHHHHHHHHHHTTCCEEEECSSSEEEECBTTCHHHHHHHHHHHTCC-SSCCCEECSSHHHHHHHBCCCHHHHHHHHS-
T ss_pred             chHHHHHHHHHHHcCCEEEEECCcEEEEEecCCCHHHHHHHHHHhCCC-CCCeEEEeCCHHHHHHHccCCHHHHHHHhC-
Confidence            346899999999999999999999999999999999999999999999 999999999999999999998888889987 


Q ss_pred             CCCCEEEEecCCC-ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccEEEe
Q psy198          113 LPGPVTIVFNRSE-HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVID  190 (245)
Q Consensus       113 wPGplTlIl~~~~-~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~ivd  190 (245)
                      ||||+| |+++++ .+|+.++++.+|||||+|+||+++.|++.+|.||++||||+||+|++++.+++. ++.+.+|+|+|
T Consensus       279 ~pgPit-lL~~~~~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd  357 (761)
T 3vth_A          279 QRRPIV-LLKKKGEKLAKGIADDLDTLGVMLPYAPIHYLLMEEIDFPIVMTSGNVSEEPICKDNEEALEKLKDIADVFLL  357 (761)
T ss_dssp             TTCCEE-EEEBCSSCCCTTSSTTCSEEEEECCCSHHHHHHHHHCSSCEECEESSSTTSCCCCSHHHHHHHTTTTCSEEEE
T ss_pred             CCCCEE-EEECCCCCCCHhHcCCCCeEEEEecCCHHHHHHHHHcCCeEEEcCcccCCCCCCCCHHHHHHHccCcCCEEEE
Confidence            999999 577776 799999999999999999999999999999999999999999999999999985 45579999999


Q ss_pred             CCC-CCCCCCCCCeEEEEEeCCceEEEecCCChHHH--H------HHHHhCCccccCCcCC
Q psy198          191 GGI-ISNPERFGSTIVDLSEENVYSIVRKGVCYDKI--L------KILHKYHLVEKNTFPI  242 (245)
Q Consensus       191 ~g~-~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~--~------~~l~~~~~~~~~~~~~  242 (245)
                      +|+ +.  .+.+|||||++ ++++++||+|.++...  .      ..+=..|-+++|+|.+
T Consensus       358 ~~r~i~--~~~~STVvd~~-~~~~~iLR~grG~~P~~~~l~~~~~~~vla~G~~lknt~~l  415 (761)
T 3vth_A          358 NNRDIV--NRIDDSVTSFN-AGAERIIRRARGYAPQPILLKKEVKASILAVGGFYKNTFCM  415 (761)
T ss_dssp             ESSCCS--SCCCCCEECEE-TTEECCSBCCTTTTTCCEECSSCCSSCEEECCCSTTBCCEE
T ss_pred             CCCCcc--CCCCCeEEEEE-CCcEEEEecCCCCCCCccccCCCCCCcEEEeChhhcceEEE
Confidence            874 44  48999999998 8899999999854332  1      1223677888888864

>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A {Streptococcus mutans}

Probab=100.00  E-value=1.5e-44  Score=324.13  Aligned_cols=160  Identities=15%  Similarity=0.195  Sum_probs=141.1

Q ss_pred             CHHHHHHHHHHHH-cCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHh
Q psy198           33 DPKAALLAAQCLK-KGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAE  111 (245)
Q Consensus        33 ~~~~i~~a~~~L~-~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~  111 (245)
                      +.+.+++|+++|+ +||+|+|||||+|||+|  +|++||+|||++|+|+.+|||++|++|++++++|+++++..++++++
T Consensus        42 ~~~~i~~Aa~~L~~~GgIVa~PTdTvYGL~c--~n~~AV~rL~~iK~Rp~~KPl~vmv~dl~~l~~~~~v~~~~~~Ll~~  119 (295)
T 3l7v_A           42 DGNLSQEGFEIVKGEGGVIVCPTKVGYIIMT--SDKKGLERKFEAKKRNRNKPGVVLCGSMEELRALAQLTPEIDAFYQK  119 (295)
T ss_dssp             CSSCCHHHHHHHHSTTCEEEEEETTEEEEEE--SSHHHHHHHHHHHTCCTTSCCEEECSSHHHHHHHBCCCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCEEEEECCCEEEEEE--cCHHHHHHHHHHcCCCCCCCEEEEeCCHHHHHHHhcCCHHHHHHHHh
Confidence            4457899999999 99999999999999999  89999999999999999999999999999999999998888899999


Q ss_pred             hCCCCEEE--EecCCC----ccc-------cccCCCCCe----EEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCC
Q psy198          112 LLPGPVTI--VFNRSE----HLN-------LELNPNVTK----VAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLC  174 (245)
Q Consensus       112 ~wPGplTl--Il~~~~----~lp-------~~l~~~~~t----vgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~  174 (245)
                      |||||+|+  |+|+++    .+|       +.++++.+|    ||||+|+||++++|++.+|.||++||||+||++++++
T Consensus       120 ~wPGPiTlT~ILp~k~~a~~~lp~~~~~~~~~v~~g~~t~~~~VGVRvP~~pl~~~Ll~~~g~PLvaTSAN~SGep~~~~  199 (295)
T 3l7v_A          120 HWDEDILLGCILPWKAEAYEKLKAYGDGREELMTDIRGTSCFVIKFGVAGEQIAKEMWEKEGRMVYASSANPSGKGNRGK  199 (295)
T ss_dssp             HHHHTCCEEEEEEBCHHHHHHHHHTCSCTHHHHSCTTSEEEEEESSCHHHHHHHHHHHHHHCCCCEEEECC-----CTTC
T ss_pred             cCCCCceeeEEEECCccccccCCcccccchhhccCCCCCcceeeEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCC
Confidence            99999975  999653    366       467788899    9999999999999999999999999999999999999


Q ss_pred             HHHHH-hhcCCccEEEeCCCC
Q psy198          175 INEFQ-KLWSQLSVVIDGGII  194 (245)
Q Consensus       175 ~e~~~-~~~~~vd~ivd~g~~  194 (245)
                      .+++. ++.+.+|+|+|+|++
T Consensus       200 ~ee~~~~L~~~vD~iLd~G~~  220 (295)
T 3l7v_A          200 VEGIGERIESMVDLVIEADDY  220 (295)
T ss_dssp             GGGSCHHHHHHSSEEEECHHH
T ss_pred             HHHHHHHhcCcCcEEEeCCCc
Confidence            99975 455789999998763

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=100.00  E-value=6e-41  Score=328.69  Aligned_cols=196  Identities=26%  Similarity=0.295  Sum_probs=170.7

Q ss_pred             HHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhhC
Q psy198           34 PKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAELL  113 (245)
Q Consensus        34 ~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~w  113 (245)
                      .+.+++|+++|++||||++||||+|||+|+++|++||+|||++|+|+ +|||++|++|++      .+++...++++. |
T Consensus       111 ~~~i~~aa~~L~~G~IVa~pt~ggYgL~cda~n~~AV~rL~~~K~Rp-~KPlavm~~dl~------~v~~~~~~ll~~-~  182 (657)
T 3ttc_A          111 EAALQAAIAQLKMGNIVAIKGIGGFHLACDARNSNAVATLRARKHRP-AKPLAVMLPVAD------GLPDAARQLLTT-P  182 (657)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSEEEEEETTCHHHHHHHHHHTTCS-SSCCCEECSCCT------TSCHHHHHHHTS-T
T ss_pred             hHHHHHHHHHHHcCCEEEEECCceeEEEeecCCHHHHHHHHHHhCCC-CCCEEEEECChH------HCCHHHHHHHhc-C
Confidence            56899999999999999999999999999999999999999999998 899999999998      345556688887 9


Q ss_pred             CCCEEEEecCCC-ccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHH-hhcCCccEEEeC
Q psy198          114 PGPVTIVFNRSE-HLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQ-KLWSQLSVVIDG  191 (245)
Q Consensus       114 PGplTlIl~~~~-~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~-~~~~~vd~ivd~  191 (245)
                      |||+|+|+++++ .+|+.++++.+|||||+|+||+++.|++.+|.||++||||+||++++++.+++. ++.+.+|+|+|+
T Consensus       183 pgPiTli~~~~~~~lp~~v~~~~~tvGvRlP~~pl~~~Ll~~~g~PLv~TSAN~SG~p~~~~~~e~~~~l~~~vD~iLd~  262 (657)
T 3ttc_A          183 AAPIVLVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISNEQALEDLQGIADGFLIH  262 (657)
T ss_dssp             TCCEEEEEGGGCTTSCTTSSTTCSEEEEECCCSHHHHHHHHHHCSCEEEEECCCTTSCCCCSHHHHHHHHTTTCSEEEEE
T ss_pred             CCCEEEEEeCCcCCCCHHHCCCCCceEEEeCCCHHHHHHHHHcCCCeEECCcccCCCCCCCCHHHHHHHhcCCCeEEEEC
Confidence            999999998876 599999999999999999999999999999999999999999999999999986 455799999998


Q ss_pred             CCCCCCCCCCCeEEEEEeCCceEEEecCCChHHHH----------HHHHhCCccccCCcCC
Q psy198          192 GIISNPERFGSTIVDLSEENVYSIVRKGVCYDKIL----------KILHKYHLVEKNTFPI  242 (245)
Q Consensus       192 g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~~~~----------~~l~~~~~~~~~~~~~  242 (245)
                      |+.. ..+.+|||||   + ++++||+|.++...-          ..+=..|-+++|+|.+
T Consensus       263 gr~i-~~~~dsSVV~---~-~~~ilRrgrG~~p~~~~l~~~~~~~~~vla~G~~lknt~~l  318 (657)
T 3ttc_A          263 NRDI-VQRMDDSVVR---E-SGEMLRRSRGYVPDALALPPGFKNVPPVLCLGADLKNTFCL  318 (657)
T ss_dssp             SSCC-CSCCCCCEEE---T-TCCEEECCTTTTTCCEECCTTCCSEEEEEECCCSSSCCCEE
T ss_pred             CCcc-cCCCCCcEEE---C-CCeEEEcCCCCCCCccccCcccCCCCCEEEecccccceEEE
Confidence            8544 2589999999   4 789999998654321          1123678888888854

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=100.00  E-value=5.9e-35  Score=291.56  Aligned_cols=207  Identities=19%  Similarity=0.148  Sum_probs=180.7

Q ss_pred             CHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHHHhh
Q psy198           33 DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELLAEL  112 (245)
Q Consensus        33 ~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~~~~  112 (245)
                      ..+++++|+++|++|++|++||+|+|+|+|||+|++||+||++.|+|+ +|||+||+.|++++++|+.+++...+++...
T Consensus       199 ~~~~i~~a~~~l~~G~iva~kg~ggy~L~cda~n~~aV~~lr~~K~Rp-~kP~avm~~d~~~~~~~~~~~~~e~~~L~s~  277 (772)
T 4g9i_A          199 YGDPLRKAAELIDKGYIVAIKGIGGIHLACDAANEEVVAELRRRTFRP-QKPFAIMAKDIETVKSFAYVSPEEEEELTSY  277 (772)
T ss_dssp             TTHHHHHHHHHHTTSCCEEECCSSSBEEECCTTCHHHHHHHHHHTTCS-SSCCEEECSSHHHHHHHSCCCHHHHHHHSST
T ss_pred             chHHHHHHHHHHHcCCEEEEecCCeeEEEEecCCHHHHHHHHHhhCCC-CCCcEEEeCCHHHHHHHhccCchhhhhhccC
Confidence            357899999999999999999999999999999999999999999998 7999999999999999999988888888887


Q ss_pred             CCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCC-CeeeccCCCCCCCCCCCHHHH-HhhcCCccEEEe
Q psy198          113 LPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDS-PLALTSANESNEPSTLCINEF-QKLWSQLSVVID  190 (245)
Q Consensus       113 wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~-PL~sTSAN~SG~~~~~~~e~~-~~~~~~vd~ivd  190 (245)
                      |+.++++..+....+|+.++++.+|||||+|++|+++.|++.+|. ||++||||+||+|++++.+++ +++.+.+|+++|
T Consensus       278 ~~Pivll~~~~~~~l~~~vap~~~~~Gv~lP~~pl~~lL~~~~~~~~lv~tSaN~sg~P~~~~~~~a~~~L~~~~D~~L~  357 (772)
T 4g9i_A          278 RRPIITLRKKEPFPLPENLAPGLHTIGVMLPYAGTHYILFHWSKTPVYVMTSANYPGMPMVKDNERAFEELKDVADYFLL  357 (772)
T ss_dssp             TCCEEEEECCSSCCSCTTSCSSCSEEEEECCCSTHHHHHHHSSSSCCCCCEESSCTTSCCBCSHHHHHHHHTTTCSBEEE
T ss_pred             CCCCEEEECCCCCCCChhHCCCCCeEEEEecCCHHHHHHHHhcCCCEEEECcCCCCCCCCccCHHHHHHhhcCcccEEEE
Confidence            777888877777789999999999999999999999999999987 479999999999999999997 467789999999


Q ss_pred             CCCCCCCCCCCCeEEEEEeCCceEEEecCCC--hHHHHHH----HHhCCccccCCcCC
Q psy198          191 GGIISNPERFGSTIVDLSEENVYSIVRKGVC--YDKILKI----LHKYHLVEKNTFPI  242 (245)
Q Consensus       191 ~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~--~~~~~~~----l~~~~~~~~~~~~~  242 (245)
                      +++.. ......+||++. ++...+||++..  |..+.-.    +=..|-+++|+|.+
T Consensus       358 h~R~I-~~~~DDSvv~~~-~~~~~~lRr~RG~~P~~~~~~~~~~~la~G~~lknt~~l  413 (772)
T 4g9i_A          358 HNRKI-LNRADDSVIRFV-DGKRAVIRRSRGFVPLPIEIPFEYNGLAVGAELMNAFGV  413 (772)
T ss_dssp             ESSCC-CSCCCCCEECCC-SSSCCBSCCCTTSTTCCEECSSCCCEEECCCSSSCCCEE
T ss_pred             CCCCc-cCccCCceEEEE-CCeEEEEecCCCCCCCccccCCCCceEEechhHcceEEE
Confidence            98776 368999999998 889999999764  3322111    12567788888853

>3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A*

Probab=98.37  E-value=8.4e-07  Score=85.99  Aligned_cols=147  Identities=16%  Similarity=0.124  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHcCCeEE-EecCcEEE--------EeccCCChHHHHHHH-HHhCCCCCCCcEEEeCCcCccccccccCc
Q psy198           34 PKAALLAAQCLKKGCVVA-LPTDTLYG--------LACDATNSKAINILY-EIKKRDVNKPLAICVSEITDIPKWADTHT  103 (245)
Q Consensus        34 ~~~i~~a~~~L~~GgvVi-~PTdTvYg--------L~a~a~n~~Av~rI~-~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~  103 (245)
                      .+..+++++.|.+|+||. +..-.-||        |.|+|.+++..+||+ ++|+|+.-.||+-.+- .|.+.+|.+.+ 
T Consensus       396 ~~~~~~~A~~la~g~vvgw~qGr~EfGPRALG~RSILadP~~~~~~~~lN~~iK~RE~fRPfAP~vl-~e~a~~~f~~~-  473 (576)
T 3ven_A          396 ANLEREVAALIASGKVVGWAQGRGEVGPRALGQRSLLGSAHSPTMRDHINLRVKDREWWRPFAPSML-RSVSDQVLEVD-  473 (576)
T ss_dssp             TTHHHHHHHHHHTTCCEEEECSSCBCSSSCCSSEEEEEESSCSSHHHHHHHTTSCCCTTCCCCEEEE-HHHHHHHBSSC-
T ss_pred             CcHHHHHHHHHhCCCEEEEEecCccccccccccceeecCCCChHHHHHHHHHhcCCCccCCcChhhh-HHHHHHHcCCC-
Confidence            345689999999999997 88888888        899999999999999 8999999999998774 36677775431 


Q ss_pred             hHHHHHHhhCCCCEEE-EecC----CCccccccCCCCCeEE---EEecCcHHHHHHHHHc----CCC-eeeccCCCCCCC
Q psy198          104 VSFELLAELLPGPVTI-VFNR----SEHLNLELNPNVTKVA---VRIPDHKFLRQLLKLM----DSP-LALTSANESNEP  170 (245)
Q Consensus       104 ~~~~l~~~~wPGplTl-Il~~----~~~lp~~l~~~~~tvg---vRip~~~~~~~Li~~~----g~P-L~sTSAN~SG~~  170 (245)
                               .|.|+.+ +.+-    ++.+|..+. -++|--   |.=-.+|...+||+++    |.| |+.||.|..|+|
T Consensus       474 ---------~~spyMl~~~~v~~~~r~~ipav~H-vDgTaR~QtV~~~~np~~~~ll~~f~~~TG~pvllNTSfN~~GeP  543 (576)
T 3ven_A          474 ---------ADFPYMIMTTKVRAAYAERLPSVVH-EDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEP  543 (576)
T ss_dssp             ---------SCCCSSCSCEEBCGGGTTTCTTTSC-TTSEECCEEECTTTCHHHHHHHHHHHHHHSSCEEEEEESSCTTSC
T ss_pred             ---------CCCCceeEeeecCHhHHhhCCcEEe-ccCCccceEECCccCHHHHHHHHHHHHHhCCeEEEECCCCCCCCC
Confidence                     2455443 3332    245666443 233322   2334688889998854    888 569999999999


Q ss_pred             CCCCHHHHHhhc--CCccEEEeCC
Q psy198          171 STLCINEFQKLW--SQLSVVIDGG  192 (245)
Q Consensus       171 ~~~~~e~~~~~~--~~vd~ivd~g  192 (245)
                      -..+++|+.+.|  ..+|+.+-++
T Consensus       544 iV~tp~dA~~~f~~~~lD~Lv~~~  567 (576)
T 3ven_A          544 IVSSPADALLTFSRLPIDALAVGP  567 (576)
T ss_dssp             CCCSHHHHHHHHHHTTCSEEEETT
T ss_pred             CCCCHHHHHHHHHhCCCCEEEECC
Confidence            999999976655  5789777544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1jcua_	208	d.115.1.1 (A:) Hypothetical protein MTH1692 {Archa	5e-27
d1k7ja_	206	d.115.1.1 (A:) Hypothetical protein YciO {Escheric	1e-26
d1hrua_	186	d.115.1.1 (A:) Hypothetical protein YrdC {Escheric	9e-25

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 208

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  101 bits (252), Expect = 5e-27
 Identities = 60/196 (30%), Positives = 107/196 (54%), Gaps = 9/196 (4%)

Query: 28  IVKVT----DPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNK 83
           I K+T     P     A   ++ G +V  PTDT+YGL  +A +  A+  L+ +K R  +K
Sbjct: 3   IRKITRKNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHK 62

Query: 84  PLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIP 143
           P++ICVS + +IP+++     + EL+  +LPGP T+V  R+E +   +    ++V +R+P
Sbjct: 63  PVSICVSCVDEIPRFSRPSGDAMELMERILPGPYTVVLERNELIPDVITGGSSRVGIRVP 122

Query: 144 DHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGST 203
           D +  R++      P+  TSAN S +P +  + E  +    + +V+D G   + E   ST
Sbjct: 123 DDEICRRI--AARFPVTATSANISGKPPSPRLEEIVRDLDAVDLVLDAGDCLDME--PST 178

Query: 204 IVDLSEENVYSIVRKG 219
           ++DL+      ++R+G
Sbjct: 179 VIDLTVNPP-RVLRRG 193

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]} Length = 206

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

 Score =  100 bits (249), Expect = 1e-26
 Identities = 43/203 (21%), Positives = 91/203 (44%), Gaps = 11/203 (5%)

Query: 25  MCSIVKV--TDPKAALL--AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRD 80
           M     +   +P+  L+  A + ++KG V+  PTD+ Y L C   +  A+  +  I++  
Sbjct: 1   MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLP 60

Query: 81  VNKPLAICVSEITDIPKWADTHTVSFELLAELLPGPVTIVFNRSE-HLNLELNPNVTKVA 139
                 +   +++++  ++    V+F L+    PG  T +   ++      L      + 
Sbjct: 61  DGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIG 120

Query: 140 VRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINE--FQKLWSQLSVVIDGGIISNP 197
           +R+P +   + LL+ +  P+  TS        T    E    +L  Q+ ++I GG +   
Sbjct: 121 MRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEIKDRLEKQVDLIIHGGYLGQK 180

Query: 198 ERFGSTIVDLSEENVYSIVRKGV 220
               +T++DL+++    +VR+GV
Sbjct: 181 P---TTVIDLTDDTP-VVVREGV 199

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]} Length = 186

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

 Score = 95.0 bits (235), Expect = 9e-25
 Identities = 48/176 (27%), Positives = 74/176 (42%), Gaps = 5/176 (2%)

Query: 40  AAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWA 99
           A   L +  V+A PT+ ++G+ CD  +  A+  L E+K+R V+K L +  +    +  + 
Sbjct: 11  AIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYI 70

Query: 100 D---THTVSFELLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMD 156
           D      V  E +    PGPVT VF         L      +AVR+ DH  +  L +   
Sbjct: 71  DDTMLTDVQRETIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYG 130

Query: 157 SPLALTSANESNEPSTLCINEFQKLWSQLSVVIDGGIISNPERFGSTIVDLSEENV 212
            PL  TSAN S  P    ++E +  +     V+ G          S I D     +
Sbjct: 131 KPLVSTSANLSGLPPCRTVDEVRAQFGAAFPVVPGETGGRLN--PSEIRDALTGEL 184

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1k7ja_	206	Hypothetical protein YciO {Escherichia coli [TaxId	100.0
d1jcua_	208	Hypothetical protein MTH1692 {Archaeon Methanobact	100.0
d1hrua_	186	Hypothetical protein YrdC {Escherichia coli [TaxId	100.0

>d1k7ja_ d.115.1.1 (A:) Hypothetical protein YciO {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YciO
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-55  Score=374.01  Aligned_cols=194  Identities=20%  Similarity=0.384  Sum_probs=177.0

Q ss_pred             hhccc----cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc
Q psy198           25 MCSIV----KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD  100 (245)
Q Consensus        25 ~~~~~----~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~  100 (245)
                      |++++    ++++.+.+++|++.|++||+|++||||+|||+|+|+|++||+|||++|+|+.+|||+++++|++++.+|+.
T Consensus         1 M~~~~~~~~~~p~~~~i~~a~~~L~~G~vv~~PTdTvYgl~~da~~~~av~~i~~iK~R~~~kpl~vlv~~~~~~~~~~~   80 (206)
T d1k7ja_           1 MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSF   80 (206)
T ss_dssp             CCEEEECCSSSCCHHHHHHHHHHHHTTCCEEEEETTEEEEEEETTCHHHHHHHHHHHTCCTTCCCEEECSSHHHHHHHBC
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhccccccccccccCCHHHHHHHhh
Confidence            56555    66789999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cCchHHHHHHhhCCCCEEEEecCCCcccc-ccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCC-CCCHHHH
Q psy198          101 THTVSFELLAELLPGPVTIVFNRSEHLNL-ELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPS-TLCINEF  178 (245)
Q Consensus       101 ~~~~~~~l~~~~wPGplTlIl~~~~~lp~-~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~-~~~~e~~  178 (245)
                      +++...+++++|||||+|+|+++++..+. .+.++.++||||+|+|+++++|++.+|+||++||||+||+++ .++.+++
T Consensus        81 ~~~~~~~l~~~~wPgplT~i~~~~~~~~~~~~~~~~~tv~iRip~~~~~~~Ll~~~~~Pl~sTSAN~sG~~~~~~~~~~i  160 (206)
T d1k7ja_          81 VDNVAFRLMKNNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI  160 (206)
T ss_dssp             CCHHHHHHHHTSCSSSEEEEEEBCTTSCGGGSCTTTCEEEEECCCSHHHHHHHHHHCSCEEEEECBCTTCSSBCCCHHHH
T ss_pred             hhhhhhhhhccccccceeeeecCCccccchhhccccceeeeeecccchhHHHHHhhcCceeeecccccccccccCCHHHH
Confidence            88888899999999999999999887764 556778899999999999999999999999999999999874 5678888


Q ss_pred             Hhh-cCCccEEEeCCCCCCCCCCCCeEEEEEeCCceEEEecCCCh
Q psy198          179 QKL-WSQLSVVIDGGIISNPERFGSTIVDLSEENVYSIVRKGVCY  222 (245)
Q Consensus       179 ~~~-~~~vd~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~  222 (245)
                      .+. .+.+|+++|+|...   +.||||||++ +++++|||+|++.
T Consensus       161 ~~~~~~~vd~iid~g~~~---~~pSTIid~~-~~~~~ilR~Ga~~  201 (206)
T d1k7ja_         161 KDRLEKQVDLIIHGGYLG---QKPTTVIDLT-DDTPVVVREGVGD  201 (206)
T ss_dssp             HHHHTTTCSEEEECCCCC---SCCCEEEECG-GGCCEEEECCSSC
T ss_pred             HHHhCCCceEEEeCCCcC---CCCCeEEEEE-CCCeEEEecCCCC
Confidence            654 47899999999875   7899999998 7899999999873

>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein MTH1692
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=7.4e-55  Score=372.76  Aligned_cols=189  Identities=31%  Similarity=0.533  Sum_probs=178.7

Q ss_pred             cCCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccccCchHHHHH
Q psy198           30 KVTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWADTHTVSFELL  109 (245)
Q Consensus        30 ~~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~~~~~~~~l~  109 (245)
                      ++++++.+++|+++|++||+|+|||||+|||+|+|+|++|++|||++|+|+.+||++++++|++++.+|+.+++...+++
T Consensus         9 ~n~~~~~i~~a~~~L~~Ggivi~PTdtvYgl~c~a~~~~av~~i~~lK~R~~~kp~~vl~~~~~~~~~~~~~~~~~~~l~   88 (208)
T d1jcua_           9 KNPSPDVLEEAISVMEGGGIVIYPTDTIYGLGVNALDEDAVRRLFRVKGRSPHKPVSICVSCVDEIPRFSRPSGDAMELM   88 (208)
T ss_dssp             SCCCCHHHHHHHHHHHTTCEEECCCSSSCEEEEETTSHHHHHHHHHHCCSCTTSCCEEECSCTTTSTTTEECCHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHcCCEEEEEcCceeeeEEeCCCcHHHHHHHHhhccccccchheecchhhhhhhhhhhhHHHHHhh
Confidence            66788999999999999999999999999999999999999999999999999999999999999999998888888999


Q ss_pred             HhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhcCCccEEE
Q psy198          110 AELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLWSQLSVVI  189 (245)
Q Consensus       110 ~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~~~vd~iv  189 (245)
                      ++|||||+|+|+++++.+|+.++++.++||||+|+|+++++|++.+  ||++||||+||++++.+.+++.+.++.+|+|+
T Consensus        89 ~~~~pgp~Tii~~~~~~~~~~~~~~~~~vgiRip~~~~~~~L~~~~--Pl~~TSAN~sG~~~~~~~~ei~~~~~~vd~ii  166 (208)
T d1jcua_          89 ERILPGPYTVVLERNELIPDVITGGSSRVGIRVPDDEICRRIAARF--PVTATSANISGKPPSPRLEEIVRDLDAVDLVL  166 (208)
T ss_dssp             HHSCSSSEEEEEEECSCCCHHHHTTTTEEEEECCSCHHHHHHHHHS--CEEEEECCSSSCCSCSCHHHHHHHSSSSEECC
T ss_pred             hcccccccceehhhhhhhhhhhcCCccceeeeccchHHHHHHhcCC--CcccccccccccccchhhHHHHHHhcCccEEE
Confidence            9999999999999999999999888899999999999999999873  99999999999999999999987788999999


Q ss_pred             eCCCCCCCCCCCCeEEEEEeCCceEEEecCCChH
Q psy198          190 DGGIISNPERFGSTIVDLSEENVYSIVRKGVCYD  223 (245)
Q Consensus       190 d~g~~~~~~~~~STIVd~~~~~~~~ilR~G~~~~  223 (245)
                      |+|.+..  +.+|||||++ +++++|||+|+++.
T Consensus       167 d~g~~~~--~~~STIid~~-~~~~~IlR~G~i~~  197 (208)
T d1jcua_         167 DAGDCLD--MEPSTVIDLT-VNPPRVLRRGKGPL  197 (208)
T ss_dssp             SSCCCSC--SCCCEEECCC-SSSCCEEECCCSSC
T ss_pred             ECCcCCC--CCCCEEEEee-CCceEEEEeCCCCH
Confidence            9998774  8999999998 88899999999864

>d1hrua_ d.115.1.1 (A:) Hypothetical protein YrdC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: YrdC/RibB
superfamily: YrdC/RibB
family: YrdC-like
domain: Hypothetical protein YrdC
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-51  Score=343.69  Aligned_cols=181  Identities=28%  Similarity=0.370  Sum_probs=163.1

Q ss_pred             CCCHHHHHHHHHHHHcCCeEEEecCcEEEEeccCCChHHHHHHHHHhCCCCCCCcEEEeCCcCccccccc---cCchHHH
Q psy198           31 VTDPKAALLAAQCLKKGCVVALPTDTLYGLACDATNSKAINILYEIKKRDVNKPLAICVSEITDIPKWAD---THTVSFE  107 (245)
Q Consensus        31 ~~~~~~i~~a~~~L~~GgvVi~PTdTvYgL~a~a~n~~Av~rI~~iK~R~~~Kpl~ll~~s~~~l~~~~~---~~~~~~~  107 (245)
                      +.+.+++++|+++|++||+|++||||+|||+|+|+|++||+|||++|+|+.+|||+++++|++++++|+.   ..+...+
T Consensus         2 n~~~d~i~~a~~~L~~G~iv~~PTdt~Ygl~~~~~~~~av~~i~~~K~R~~~kp~~vlv~~~~~~~~~~~~~~~~~~~~~   81 (186)
T d1hrua_           2 NLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVMRLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRE   81 (186)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEECSSSEEEEECTTCHHHHHHHHHHHTCCGGGCCEEEESSHHHHGGGCCCTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCEEEEECCceeEEEEeCCChHHHHHHHHhhhhccccccceeeehhhhhhhhcccchhHHHHHH
Confidence            3457889999999999999999999999999999999999999999999999999999999999999985   3345567


Q ss_pred             HHHhhCCCCEEEEecCCCccccccCCCCCeEEEEecCcHHHHHHHHHcCCCeeeccCCCCCCCCCCCHHHHHhhc-CCcc
Q psy198          108 LLAELLPGPVTIVFNRSEHLNLELNPNVTKVAVRIPDHKFLRQLLKLMDSPLALTSANESNEPSTLCINEFQKLW-SQLS  186 (245)
Q Consensus       108 l~~~~wPGplTlIl~~~~~lp~~l~~~~~tvgvRip~~~~~~~Li~~~g~PL~sTSAN~SG~~~~~~~e~~~~~~-~~vd  186 (245)
                      ++.++||||+|+|+|+++.+++++..+.+|||||+|+|+++++|++.+|.||++||||+||++++.+.+++.+.| +.+|
T Consensus        82 ~~~~~~Pgplt~i~~~~~~~~~~~~~~~~tigvRiP~~~~~~~L~~~~g~Pl~~TSAN~sG~~~~~~~~~i~~~~~~~vd  161 (186)
T d1hrua_          82 TIFSRWPGPVTFVFPAPATTPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGAAFP  161 (186)
T ss_dssp             HHHTTCSSSEEEEEECCTTSCHHHHTTSSEEEEEECCCHHHHHHHHHHTSCEEEEESCCTTSCCCCSHHHHHHHHCTTSC
T ss_pred             HHHhcCCCcceeccccccCCcchhhhccceeeeeechhHHHHHHHHHhCCcEEecccccCCCCCCCcHHHHHHHhCCCcE
Confidence            899999999999999999999998888899999999999999999999999999999999999999999987655 6788


Q ss_pred             EEEeCCCCCCCCCCCCeEEEEEeCCceEEEe
Q psy198          187 VVIDGGIISNPERFGSTIVDLSEENVYSIVR  217 (245)
Q Consensus       187 ~ivd~g~~~~~~~~~STIVd~~~~~~~~ilR  217 (245)
                      +++|++...   +.||||||++ ++  +|||
T Consensus       162 ~i~~~~~~~---~~~STIid~~-~~--~iiR  186 (186)
T d1hrua_         162 VVPGETGGR---LNPSEIRDAL-TG--ELFR  186 (186)
T ss_dssp             BCCCCCCSS---CCCCEEEETT-TS--SBCC
T ss_pred             EEECCCCCC---CCCcEEEECc-CC--EEeC
Confidence            776655443   7899999998 55  4676