Psyllid ID: psy1995

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-
MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK
cccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHcccccEEEEccccccHHHHHHHHHccccccccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHcc
cccHHHccccccccccccHHHHHHHHHHHHHHHccccEEEEEcHHHHcHHHHccHHHHcHHHcEEEEEcccccHHHHHHHHHccccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHccccccccHHHccccccccHHHHHHHHHHHHcc
manpcivpqknqvdlgdnrwynqHEHQLQLakesepelvFIGDSLISFLTQTQIWHNLfeplhclafgiggdkvEHCLWRVQdgildsikpKVIVILVGtnntedsaENIADGILELIRLVQTKQPQADVVVLEllprgkliNKLWTKNLATNQIladklspaplgpkvhliqhnkdeiiskdeisqgdfydylhltesgyrkvftpvyek
manpcivpqknqvdlgDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDgildsikpKVIVILVGtnntedsaENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKdeiiskdeisqgDFYDYLHLtesgyrkvftpvyek
MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK
**************LGDNRWYNQHEHQLQLA***EPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPV***
**NPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK
MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK
*ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query211 2.2.26 [Sep-21-2011]
Q5R4G2229 Platelet-activating facto yes N/A 0.976 0.899 0.444 9e-48
P68402229 Platelet-activating facto yes N/A 0.976 0.899 0.444 9e-48
P68401229 Platelet-activating facto yes N/A 0.976 0.899 0.444 9e-48
O35264229 Platelet-activating facto yes N/A 0.976 0.899 0.444 2e-47
Q61206229 Platelet-activating facto yes N/A 0.976 0.899 0.444 2e-47
Q5ZMS2229 Platelet-activating facto yes N/A 0.976 0.899 0.449 1e-46
Q5R6X1231 Platelet-activating facto no N/A 0.943 0.861 0.445 1e-44
Q29460232 Platelet-activating facto no N/A 0.943 0.857 0.445 1e-44
Q15102231 Platelet-activating facto no N/A 0.943 0.861 0.445 2e-44
Q61205232 Platelet-activating facto no N/A 0.943 0.857 0.445 4e-44
>sp|Q5R4G2|PA1B2_PONAB Platelet-activating factor acetylhydrolase IB subunit beta OS=Pongo abelii GN=PAFAH1B2 PE=2 SV=1 Back     alignment and function desciption
 Score =  189 bits (481), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 134/209 (64%), Gaps = 3/209 (1%)

Query: 2   ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEP 61
           +NP  +P   +   GD+RW +QH   +   K+ EP+++F+GDS++  + Q +IW  LF P
Sbjct: 6   SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSP 65

Query: 62  LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLV 121
           LH L FGIGGD   H LWR+++G L++IKPKVIV+ VGTNN E++AE +A GI  +++L+
Sbjct: 66  LHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLI 125

Query: 122 QTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIIS 181
            T+QPQA ++VL LLPRG+  N L  KN   NQ+L   L   P    V L+  +   + S
Sbjct: 126 NTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSL---PKLANVQLLDTDGGFVHS 182

Query: 182 KDEISQGDFYDYLHLTESGYRKVFTPVYE 210
              IS  D +D+LHLT  GY K+  P++E
Sbjct: 183 DGAISCHDMFDFLHLTGGGYAKICKPLHE 211
Inactivates PAF by removing the acetyl group at the sn-2 position. This is a catalytic subunit.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 7
>sp|P68402|PA1B2_HUMAN Platelet-activating factor acetylhydrolase IB subunit beta OS=Homo sapiens GN=PAFAH1B2 PE=1 SV=1 Back     alignment and function description
>sp|P68401|PA1B2_BOVIN Platelet-activating factor acetylhydrolase IB subunit beta OS=Bos taurus GN=PAFAH1B2 PE=1 SV=1 Back     alignment and function description
>sp|O35264|PA1B2_RAT Platelet-activating factor acetylhydrolase IB subunit beta OS=Rattus norvegicus GN=Pafah1b2 PE=1 SV=1 Back     alignment and function description
>sp|Q61206|PA1B2_MOUSE Platelet-activating factor acetylhydrolase IB subunit beta OS=Mus musculus GN=Pafah1b2 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZMS2|PA1B2_CHICK Platelet-activating factor acetylhydrolase IB subunit beta OS=Gallus gallus GN=PAFAH1B2 PE=2 SV=1 Back     alignment and function description
>sp|Q5R6X1|PA1B3_PONAB Platelet-activating factor acetylhydrolase IB subunit gamma OS=Pongo abelii GN=PAFAH1B3 PE=2 SV=1 Back     alignment and function description
>sp|Q29460|PA1B3_BOVIN Platelet-activating factor acetylhydrolase IB subunit gamma OS=Bos taurus GN=PAFAH1B3 PE=1 SV=1 Back     alignment and function description
>sp|Q15102|PA1B3_HUMAN Platelet-activating factor acetylhydrolase IB subunit gamma OS=Homo sapiens GN=PAFAH1B3 PE=1 SV=1 Back     alignment and function description
>sp|Q61205|PA1B3_MOUSE Platelet-activating factor acetylhydrolase IB subunit gamma OS=Mus musculus GN=Pafah1b3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
321461058245 hypothetical protein DAPPUDRAFT_59365 [D 0.909 0.783 0.502 4e-51
240848987226 platelet-activating factor acetylhydrola 0.971 0.907 0.461 4e-48
224083121242 PREDICTED: platelet-activating factor ac 0.976 0.851 0.468 3e-47
326933420229 PREDICTED: platelet-activating factor ac 0.976 0.899 0.459 5e-47
148230739229 uncharacterized protein LOC379732 [Xenop 0.976 0.899 0.459 7e-47
345310485229 PREDICTED: platelet-activating factor ac 0.976 0.899 0.459 9e-47
126326612229 PREDICTED: platelet-activating factor ac 0.976 0.899 0.454 2e-46
426244578229 PREDICTED: platelet-activating factor ac 0.976 0.899 0.449 3e-46
345799902229 PREDICTED: platelet-activating factor ac 0.976 0.899 0.444 3e-46
184185464229 platelet-activating factor acetylhydrola 0.976 0.899 0.444 3e-46
>gi|321461058|gb|EFX72093.1| hypothetical protein DAPPUDRAFT_59365 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 98/195 (50%), Positives = 135/195 (69%), Gaps = 3/195 (1%)

Query: 16  GDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVE 75
           GDNRW N H+  +   KE EPE++F+GDSLIS L  T +W  +F PLH L FGIGGD+ +
Sbjct: 15  GDNRWMNLHQRFVLETKEREPEILFVGDSLISHLIYTDMWETMFAPLHPLNFGIGGDQTQ 74

Query: 76  HCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLEL 135
           H LWR+ +G LD+IKPKV+V+LVGTNN   + + IADGI+ ++ L++ KQPQA ++V+ L
Sbjct: 75  HVLWRLANGELDNIKPKVVVLLVGTNNHGHTPDMIADGIMAVVHLIREKQPQAHIIVMSL 134

Query: 136 LPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLH 195
           LPRG L+N L  +N   N++LA K +   L  +V L+    D ++    IS  D YDYLH
Sbjct: 135 LPRGHLVNPLRQRNAQVNELLAHKTA---LMTRVQLVNTAPDFVLPDGSISHLDMYDYLH 191

Query: 196 LTESGYRKVFTPVYE 210
           LT +GYRKVF P+++
Sbjct: 192 LTPNGYRKVFEPLHD 206

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|240848987|ref|NP_001155828.1| platelet-activating factor acetylhydrolase IB subunit beta [Acyrthosiphon pisum] gi|239791960|dbj|BAH72379.1| ACYPI009998 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|224083121|ref|XP_002190232.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|326933420|ref|XP_003212802.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|148230739|ref|NP_001080040.1| uncharacterized protein LOC379732 [Xenopus laevis] gi|37590293|gb|AAH59352.1| MGC69176 protein [Xenopus laevis] Back     alignment and taxonomy information
>gi|345310485|ref|XP_001514293.2| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta-like [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|126326612|ref|XP_001370923.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta-like [Monodelphis domestica] Back     alignment and taxonomy information
>gi|426244578|ref|XP_004016098.1| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta [Ovis aries] Back     alignment and taxonomy information
>gi|345799902|ref|XP_536562.3| PREDICTED: platelet-activating factor acetylhydrolase IB subunit beta [Canis lupus familiaris] Back     alignment and taxonomy information
>gi|184185464|gb|ACC68869.1| platelet-activating factor acetylhydrolase, isoform Ib, beta subunit (predicted) [Rhinolophus ferrumequinum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query211
UNIPROTKB|P68401229 PAFAH1B2 "Platelet-activating 0.976 0.899 0.449 4.8e-46
UNIPROTKB|P68402229 PAFAH1B2 "Platelet-activating 0.976 0.899 0.449 4.8e-46
UNIPROTKB|F2Z5V4229 PAFAH1B2 "Uncharacterized prot 0.976 0.899 0.449 4.8e-46
UNIPROTKB|E2RN02229 PAFAH1B2 "Uncharacterized prot 0.976 0.899 0.444 6.2e-46
MGI|MGI:108415229 Pafah1b2 "platelet-activating 0.976 0.899 0.449 6.2e-46
RGD|620332229 Pafah1b2 "platelet-activating 0.976 0.899 0.449 6.2e-46
UNIPROTKB|F1N8K4229 PAFAH1B2 "Platelet-activating 0.976 0.899 0.454 1.3e-45
UNIPROTKB|Q5ZMS2229 PAFAH1B2 "Platelet-activating 0.976 0.899 0.449 9.1e-45
ZFIN|ZDB-GENE-060526-43228 pafah1b2 "platelet-activating 0.971 0.899 0.413 1.9e-42
UNIPROTKB|Q29460232 PAFAH1B3 "Platelet-activating 0.943 0.857 0.445 2.5e-42
UNIPROTKB|P68401 PAFAH1B2 "Platelet-activating factor acetylhydrolase IB subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 94/209 (44%), Positives = 136/209 (65%)

Query:     2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEP 61
             +NP  +P   +   GD+RW +QH   +   K+ EP+++F+GDS++  + Q +IW  LF P
Sbjct:     6 SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSP 65

Query:    62 LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLV 121
             LH L FGIGGD   H LWR+++G L++IKPKVIV+ VGTNN E++AE +A GI  +++L+
Sbjct:    66 LHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLI 125

Query:   122 QTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIIS 181
              T+QPQA ++VL LLPRG+  N L  KN   NQ+L  K+S   L   V L+  +   + S
Sbjct:   126 NTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLL--KVSLPKLA-NVQLLDTDGGFVHS 182

Query:   182 KDEISQGDFYDYLHLTESGYRKVFTPVYE 210
                IS  D +D+LHLT  GY K+  P++E
Sbjct:   183 DGAISCHDMFDFLHLTGGGYAKICKPLHE 211
GO:0005737 "cytoplasm" evidence=IEA
GO:0016239 "positive regulation of macroautophagy" evidence=IEA
GO:0007283 "spermatogenesis" evidence=IEA
GO:0005886 "plasma membrane" evidence=IEA
GO:0005730 "nucleolus" evidence=IEA
GO:0003847 "1-alkyl-2-acetylglycerophosphocholine esterase activity" evidence=IEA
GO:0016042 "lipid catabolic process" evidence=IEA
UNIPROTKB|P68402 PAFAH1B2 "Platelet-activating factor acetylhydrolase IB subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z5V4 PAFAH1B2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RN02 PAFAH1B2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:108415 Pafah1b2 "platelet-activating factor acetylhydrolase, isoform 1b, subunit 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|620332 Pafah1b2 "platelet-activating factor acetylhydrolase 1b, catalytic subunit 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8K4 PAFAH1B2 "Platelet-activating factor acetylhydrolase IB subunit beta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMS2 PAFAH1B2 "Platelet-activating factor acetylhydrolase IB subunit beta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060526-43 pafah1b2 "platelet-activating factor acetylhydrolase 1b, catalytic subunit 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q29460 PAFAH1B3 "Platelet-activating factor acetylhydrolase IB subunit gamma" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9VXP4PA1B2_DROMENo assigned EC number0.36530.97150.9111yesN/A
Q5R4G2PA1B2_PONAB3, ., 1, ., 1, ., 4, 70.44490.97630.8995yesN/A
Q61206PA1B2_MOUSE3, ., 1, ., 1, ., 4, 70.44490.97630.8995yesN/A
Q5ZMS2PA1B2_CHICK3, ., 1, ., 1, ., 4, 70.44970.97630.8995yesN/A
O35264PA1B2_RAT3, ., 1, ., 1, ., 4, 70.44490.97630.8995yesN/A
P68401PA1B2_BOVIN3, ., 1, ., 1, ., 4, 70.44490.97630.8995yesN/A
P68402PA1B2_HUMAN3, ., 1, ., 1, ., 4, 70.44490.97630.8995yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1.470.914
3rd Layer3.1.10.921
3rd Layer3.1.1.4LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
cd01820214 cd01820, PAF_acetylesterase_like, PAF_acetylhydrol 1e-68
pfam13472174 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhyd 6e-15
cd01828169 cd01828, sialate_O-acetylesterase_like2, sialate_O 3e-14
cd00229187 cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_h 8e-13
cd01834191 cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase sub 2e-06
cd04502171 cd04502, SGNH_hydrolase_like_7, Members of the SGN 7e-06
cd01833157 cd01833, XynB_like, SGNH_hydrolase subfamily, simi 8e-04
cd04501183 cd04501, SGNH_hydrolase_like_4, Members of the SGN 0.002
cd01841174 cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _ 0.004
>gnl|CDD|238858 cd01820, PAF_acetylesterase_like, PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases Back     alignment and domain information 
 Score =  208 bits (532), Expect = 1e-68
 Identities = 85/211 (40%), Positives = 125/211 (59%), Gaps = 7/211 (3%)

Query: 4   PCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQT--QIWHNLFEP 61
           P   P       GD RW ++HE  +  AK+ EP++VFIGDS+      T  ++W  L+ P
Sbjct: 1   PAAAPTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTGLEVWRELYAP 60

Query: 62  LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDS--AENIADGILELIR 119
           LH L FGIGGD+ ++ LWR+++G LD + PKV+V+L+GTNN   +  AE IA+GIL ++ 
Sbjct: 61  LHALNFGIGGDRTQNVLWRLENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVE 120

Query: 120 LVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEI 179
            ++ K P A +++L LLPRG+  N L  +N   N++LA +       P V  +  +K  +
Sbjct: 121 EIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVRYDGL---PNVTFLDIDKGFV 177

Query: 180 ISKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
            S   IS  D  DYLHLT +GYRK    ++ 
Sbjct: 178 QSDGTISHHDMPDYLHLTAAGYRKWADALHP 208

Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction. Length = 214
>gnl|CDD|222156 pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family Back     alignment and domain information
>gnl|CDD|238866 cd01828, sialate_O-acetylesterase_like2, sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>gnl|CDD|238141 cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases Back     alignment and domain information
>gnl|CDD|238872 cd01834, SGNH_hydrolase_like_2, SGNH_hydrolase subfamily Back     alignment and domain information
>gnl|CDD|239946 cd04502, SGNH_hydrolase_like_7, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>gnl|CDD|238871 cd01833, XynB_like, SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB Back     alignment and domain information
>gnl|CDD|239945 cd04501, SGNH_hydrolase_like_4, Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>gnl|CDD|238879 cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 211
cd01820214 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-A 100.0
cd01841174 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfa 100.0
cd01828169 sialate_O-acetylesterase_like2 sialate_O-acetylest 100.0
cd04502171 SGNH_hydrolase_like_7 Members of the SGNH-hydrolas 100.0
cd01836191 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, Fee 99.98
cd01838199 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hyd 99.97
cd04501183 SGNH_hydrolase_like_4 Members of the SGNH-hydrolas 99.97
cd01832185 SGNH_hydrolase_like_1 Members of the SGNH-hydrolas 99.97
cd01827188 sialate_O-acetylesterase_like1 sialate O-acetylest 99.96
cd01834191 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SG 99.96
cd01833157 XynB_like SGNH_hydrolase subfamily, similar to Rum 99.96
cd01835193 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SG 99.96
cd01821198 Rhamnogalacturan_acetylesterase_like Rhamnogalactu 99.96
cd01825189 SGNH_hydrolase_peri1 SGNH_peri1; putative periplas 99.96
cd01844177 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SG 99.96
cd01822177 Lysophospholipase_L1_like Lysophospholipase L1-lik 99.96
cd01839208 SGNH_arylesterase_like SGNH_hydrolase subfamily, s 99.96
PRK10528191 multifunctional acyl-CoA thioesterase I and protea 99.96
cd04506204 SGNH_hydrolase_YpmR_like Members of the SGNH-hydro 99.96
cd01830204 XynE_like SGNH_hydrolase subfamily, similar to the 99.96
KOG3035|consensus245 99.93
cd01829200 SGNH_hydrolase_peri2 SGNH_peri2; putative periplas 99.93
cd01840150 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SG 99.93
cd01831169 Endoglucanase_E_like Endoglucanase E-like members 99.92
PF13472179 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase fami 99.92
cd01823259 SEST_like SEST_like. A family of secreted SGNH-hyd 99.92
cd00229187 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, 99.91
PF14606178 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase fami 99.87
COG2755216 TesA Lysophospholipase L1 and related esterases [A 99.84
PF00657234 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; Inter 99.78
cd01824288 Phospholipase_B_like Phospholipase-B_like. This su 99.77
COG2845354 Uncharacterized protein conserved in bacteria [Fun 99.71
cd01826305 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase l 99.68
cd01846270 fatty_acyltransferase_like Fatty acyltransferase-l 99.57
cd01842183 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG 99.47
cd01847281 Triacylglycerol_lipase_like Triacylglycerol lipase 99.19
PRK15381408 pathogenicity island 2 effector protein SseJ; Prov 99.15
KOG1388|consensus217 99.01
PF04311327 DUF459: Protein of unknown function (DUF459); Inte 98.73
PF13839263 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f 98.7
cd01837315 SGNH_plant_lipase_like SGNH_plant_lipase_like, a p 98.65
KOG3670|consensus397 98.59
PLN03156351 GDSL esterase/lipase; Provisional 98.36
PF08885251 GSCFA: GSCFA family; InterPro: IPR014982 This grou 98.19
PF07611345 DUF1574: Protein of unknown function (DUF1574); In 98.12
PF04914130 DltD_C: DltD C-terminal region; InterPro: IPR00699 97.33
COG3240370 Phospholipase/lecithinase/hemolysin [Lipid metabol 97.04
PF03629255 DUF303: Domain of unknown function (DUF303) ; Inte 96.48
TIGR02171912 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogou 94.82
cd06533171 Glyco_transf_WecG_TagA The glycosyltransferase Wec 88.37
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 87.04
TIGR00696177 wecB_tagA_cpsF bacterial polymer biosynthesis prot 84.01
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases Back     alignment and domain information 
Probab=100.00  E-value=1.4e-39  Score=253.11  Aligned_cols=204  Identities=42%  Similarity=0.744  Sum_probs=179.3

Q ss_pred             CCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcc--hhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995           4 PCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQT--QIWHNLFEPLHCLAFGIGGDKVEHCLWRV   81 (211)
Q Consensus         4 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~--~~~~~~~~~~~~~n~g~~G~~~~~~~~~~   81 (211)
                      |++-+.+..+.-+.++|++++.+++...+.++.+|+|+|||+|+|++..  ..|.+.+.+..++|+|++|.++.++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~lGDSit~g~~~~~~~~~~~~~~~~~v~N~Gi~G~tt~~~l~r~   80 (214)
T cd01820           1 PAAAPTPVDDLDGDPRWMSRHERFVAEAKQKEPDVVFIGDSITQNWEFTGLEVWRELYAPLHALNFGIGGDRTQNVLWRL   80 (214)
T ss_pred             CCCCCcCCcccccchhHHHHHHHHHHHhhcCCCCEEEECchHhhhhcccchHHHHHHcCcCCeEeeeeccccHhHHHHHH
Confidence            6677778888888899999999999998889999999999999999765  56888888999999999999999999999


Q ss_pred             hcCCCCCCCCcEEEEEeccCCCC--CCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHH
Q psy1995          82 QDGILDSIKPKVIVILVGTNNTE--DSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADK  159 (211)
Q Consensus        82 ~~~~~~~~~pd~Vvi~~G~ND~~--~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~  159 (211)
                      ....+...+||+|||++|+||..  .+++++.+++.++++.+++++|+++|++++++|....+....+.+.++|+.+++.
T Consensus        81 ~~~~l~~~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~~~~~~~~~~~n~~l~~~  160 (214)
T cd01820          81 ENGELDGVNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNPNPLRERNAQVNRLLAVR  160 (214)
T ss_pred             hcCCccCCCCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCchhHHHHHHHHHHHHHHH
Confidence            76556557899999999999998  4689999999999999999999999999999887764445567789999999998


Q ss_pred             hCCCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995         160 LSPAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE  210 (211)
Q Consensus       160 ~~~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~  210 (211)
                      |++   ..++.|+|++..+.+.++.....++.||+|||++||++|++.|.+
T Consensus       161 ~~~---~~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~  208 (214)
T cd01820         161 YDG---LPNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHP  208 (214)
T ss_pred             hcC---CCCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHH
Confidence            876   479999999998877666666667799999999999999998865

Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases Back     alignment and domain information
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins Back     alignment and domain information
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB Back     alignment and domain information
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases Back     alignment and domain information
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases Back     alignment and domain information
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A Back     alignment and domain information
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional Back     alignment and domain information
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases Back     alignment and domain information
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE Back     alignment and domain information
>KOG3035|consensus Back     alignment and domain information
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans Back     alignment and domain information
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A Back     alignment and domain information
>cd01823 SEST_like SEST_like Back     alignment and domain information
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases Back     alignment and domain information
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B Back     alignment and domain information
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism] Back     alignment and domain information
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified [] Back     alignment and domain information
>cd01824 Phospholipase_B_like Phospholipase-B_like Back     alignment and domain information
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family Back     alignment and domain information
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily Back     alignment and domain information
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional Back     alignment and domain information
>KOG1388|consensus Back     alignment and domain information
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein Back     alignment and domain information
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p Back     alignment and domain information
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases Back     alignment and domain information
>KOG3670|consensus Back     alignment and domain information
>PLN03156 GDSL esterase/lipase; Provisional Back     alignment and domain information
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised Back     alignment and domain information
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria Back     alignment and domain information
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine Back     alignment and domain information
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only] Back     alignment and domain information
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes Back     alignment and domain information
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171 Back     alignment and domain information
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
1fxw_F229 Crystal Structure Of The Recombinant Alpha1ALPHA2 C 7e-49
3dt6_A232 Crystal Structure Of Bovin Brain Platelet Activatin 5e-46
1fxw_A232 Crystal Structure Of The Recombinant Alpha1ALPHA2 C 1e-45
3dt8_A232 Crystal Structure Of Bovin Brain Platelet Activatin 2e-45
1bwr_A233 Probing The Substrate Specificity Of The Intracellu 3e-45
1es9_A232 X-Ray Crystal Structure Of R22k Mutant Of The Mamma 3e-45
1bwq_A233 Probing The Substrate Specificity Of The Intracellu 4e-45
1bwp_A233 Probing The Substrate Specificity Of The Intracellu 4e-45
>pdb|1FXW|F Chain F, Crystal Structure Of The Recombinant Alpha1ALPHA2 Catalytic Heterodimer Of Bovine Brain Platelet-Activating Factor Acetylhydrolase Ib. Length = 229 Back     alignment and structure 
Iteration: 1

 Score =  189 bits (481), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/209 (44%), Positives = 134/209 (64%), Gaps = 3/209 (1%)
Query: 2   ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEP 61
           +NP  +P   +   GD+RW +QH   +   K+ EP+++F+GDS++  + Q +IW  LF P
Sbjct: 6   SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSP 65
Query: 62  LHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLV 121
           LH L FGIGGD   H LWR+++G L++IKPKVIV+ VGTNN E++AE +A GI  +++L+
Sbjct: 66  LHALNFGIGGDTTRHVLWRLKNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLI 125
Query: 122 QTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIIS 181
            T+QPQA ++VL LLPRG+  N L  KN   NQ+L   L   P    V L+  +   + S
Sbjct: 126 NTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSL---PKLANVQLLDTDGGFVHS 182
Query: 182 KDEISQGDFYDYLHLTESGYRKVFTPVYE 210
              IS  D +D+LHLT  GY K+  P++E
Sbjct: 183 DGAISCHDMFDFLHLTGGGYAKICKPLHE 211
>pdb|3DT6|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating Factor Acetylhydrolase Covalently Inhibited By Paraoxon Length = 232 Back     alignment and structure
>pdb|1FXW|A Chain A, Crystal Structure Of The Recombinant Alpha1ALPHA2 Catalytic Heterodimer Of Bovine Brain Platelet-Activating Factor Acetylhydrolase Ib. Length = 232 Back     alignment and structure
>pdb|3DT8|A Chain A, Crystal Structure Of Bovin Brain Platelet Activating Factor Acetylhydrolase Covalently Inhibited By Sarin Length = 232 Back     alignment and structure
>pdb|1BWR|A Chain A, Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase Length = 233 Back     alignment and structure
>pdb|1ES9|A Chain A, X-Ray Crystal Structure Of R22k Mutant Of The Mammalian Brain Platelet-Activating Factor Acetylhydrolases (Paf-Ah) Length = 232 Back     alignment and structure
>pdb|1BWQ|A Chain A, Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase Length = 233 Back     alignment and structure
>pdb|1BWP|A Chain A, Probing The Substrate Specificity Of The Intracellular Brain Platelet-Activating Factor Acetylhydrolase Length = 233 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query211
1es9_A232 PAF-AH, platelet-activating factor acetylhydrolase 2e-51
1fxw_F229 Alpha2, platelet-activating factor acetylhydrolase 4e-50
2hsj_A214 Putative platelet activating factor; structr genom 6e-34
3p94_A204 GDSL-like lipase; serine hydrolase, catalytic tria 1e-21
2vpt_A215 Lipolytic enzyme; esterase, hydrolase; 1.40A {Clos 3e-14
3dc7_A232 Putative uncharacterized protein LP_3323; NESG LPR 5e-12
3skv_A385 SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydr 8e-12
1vjg_A218 Putative lipase from the G-D-S-L family; structura 4e-11
3mil_A240 Isoamyl acetate-hydrolyzing esterase; SGNH-hydrola 6e-09
3rjt_A216 Lipolytic protein G-D-S-L family; PSI-biology, mid 9e-09
1yzf_A195 Lipase/acylhydrolase; structural GENO PSI, protein 9e-07
2q0q_A216 ARYL esterase; SGNH hydrolase, oligomeric enzyme, 3e-06
3dci_A232 Arylesterase; SGNH_hydrolase SUBF structural genom 5e-06
1ivn_A190 Thioesterase I; hydrolase, protease; 1.90A {Escher 3e-05
2wao_A341 Endoglucanase E; plant cell WALL degradation, carb 8e-04
2waa_A347 Acetyl esterase, xylan esterase, putative, AXE2C; 8e-04
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A* Length = 232 Back     alignment and structure
 Score =  164 bits (417), Expect = 2e-51
 Identities = 89/210 (42%), Positives = 125/210 (59%), Gaps = 3/210 (1%)

Query: 1   MANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFE 60
             NP   P   Q   GD +W + H   +  +K+ EPE+VFIGDSL+  + Q +IW  LF 
Sbjct: 4   DENPASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFS 63

Query: 61  PLHCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRL 120
           PLH L FGIGGD  +H LWR+++G L+ I+PK++V+ VGTNN   +AE +  GI  +++L
Sbjct: 64  PLHALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQL 123

Query: 121 VQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEII 180
           V  +QPQA VVVL LLPRG+  N L  KN   N+++   L+     P+ H +  +   + 
Sbjct: 124 VNERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALA---GHPRAHFLDADPGFVH 180

Query: 181 SKDEISQGDFYDYLHLTESGYRKVFTPVYE 210
           S   IS  D YDYLHL+  GY  V   ++ 
Sbjct: 181 SDGTISHHDMYDYLHLSRLGYTPVCRALHS 210
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A Length = 229 Back     alignment and structure
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3 Length = 214 Back     alignment and structure
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis} Length = 204 Back     alignment and structure
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum} Length = 215 Back     alignment and structure
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9 Length = 232 Back     alignment and structure
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP} Length = 385 Back     alignment and structure
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A Length = 218 Back     alignment and structure
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae} Length = 240 Back     alignment and structure
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp} Length = 216 Back     alignment and structure
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5 Length = 195 Back     alignment and structure
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A* Length = 216 Back     alignment and structure
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Length = 232 Back     alignment and structure
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A* Length = 190 Back     alignment and structure
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A* Length = 341 Back     alignment and structure
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus} Length = 347 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
1fxw_F229 Alpha2, platelet-activating factor acetylhydrolase 100.0
1es9_A232 PAF-AH, platelet-activating factor acetylhydrolase 100.0
4hf7_A209 Putative acylhydrolase; PF13472 family, structural 100.0
2hsj_A214 Putative platelet activating factor; structr genom 100.0
3p94_A204 GDSL-like lipase; serine hydrolase, catalytic tria 99.98
4h08_A200 Putative hydrolase; GDSL-like lipase/acylhydrolase 99.97
3dci_A232 Arylesterase; SGNH_hydrolase SUBF structural genom 99.96
3mil_A240 Isoamyl acetate-hydrolyzing esterase; SGNH-hydrola 99.95
3rjt_A216 Lipolytic protein G-D-S-L family; PSI-biology, mid 99.95
3dc7_A232 Putative uncharacterized protein LP_3323; NESG LPR 99.95
3hp4_A185 GDSL-esterase; psychrotrophic, monoethylphosphonat 99.95
1vjg_A218 Putative lipase from the G-D-S-L family; structura 99.95
2q0q_A216 ARYL esterase; SGNH hydrolase, oligomeric enzyme, 99.95
1ivn_A190 Thioesterase I; hydrolase, protease; 1.90A {Escher 99.95
1yzf_A195 Lipase/acylhydrolase; structural GENO PSI, protein 99.95
2vpt_A215 Lipolytic enzyme; esterase, hydrolase; 1.40A {Clos 99.94
3bzw_A274 Putative lipase; protein structure initiative II, 99.94
1k7c_A233 Rhamnogalacturonan acetylesterase; N-linked glycos 99.94
3skv_A385 SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydr 99.92
2o14_A375 Hypothetical protein YXIM; NESG, X-RAY, SR595, str 99.92
1esc_A306 Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23. 99.91
2wao_A341 Endoglucanase E; plant cell WALL degradation, carb 99.89
2waa_A347 Acetyl esterase, xylan esterase, putative, AXE2C; 99.87
2w9x_A366 AXE2A, CJCE2B, putative acetyl xylan esterase; car 99.85
4i8i_A271 Hypothetical protein; 5-stranded beta sheet flanke 99.15
3kvn_X 632 Esterase ESTA; beta barrel, alpha-beta-alpha motif 98.88
1zmb_A290 Acetylxylan esterase related enzyme; alpha-beta pr 98.47
2apj_A260 Putative esterase; AT4G34215, CAR esterase family 97.6
3bma_A407 D-alanyl-lipoteichoic acid synthetase; structural 95.72
3pt5_A337 NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; 95.05
3nvb_A 387 Uncharacterized protein; protein FKBH, protein fkb 94.11
4e7p_A150 Response regulator; DNA binding, cytosol, transcri 90.92
2rjn_A154 Response regulator receiver:metal-dependent phosph 89.97
3eul_A152 Possible nitrate/nitrite response transcriptional 89.81
3hv2_A153 Response regulator/HD domain protein; PSI-2, NYSGX 88.89
2qxy_A142 Response regulator; regulation of transcription, N 88.84
3jte_A143 Response regulator receiver protein; structural ge 88.18
3ilh_A146 Two component response regulator; NYSGXRC, PSI-II, 87.98
3cu5_A141 Two component transcriptional regulator, ARAC FAM; 87.91
3cz5_A153 Two-component response regulator, LUXR family; str 87.1
3kto_A136 Response regulator receiver protein; PSI-II,struct 86.88
1qkk_A155 DCTD, C4-dicarboxylate transport transcriptional r 86.81
2qr3_A140 Two-component system response regulator; structura 86.69
3hdg_A137 Uncharacterized protein; two-component sensor acti 86.66
3eod_A130 Protein HNR; response regulator, phosphoprotein, t 86.56
2zay_A147 Response regulator receiver protein; structural ge 86.24
2rdm_A132 Response regulator receiver protein; structural ge 84.81
3hzh_A157 Chemotaxis response regulator (CHEY-3); phosphatas 84.31
3kht_A144 Response regulator; PSI-II, 11023K, structural gen 84.19
3heb_A152 Response regulator receiver domain protein (CHEY); 84.11
3cg4_A142 Response regulator receiver domain protein (CHEY-; 83.49
3eqz_A135 Response regulator; structural genomics, unknown f 83.23
3i42_A127 Response regulator receiver domain protein (CHEY- 82.84
3hdv_A136 Response regulator; PSI-II, structural genomics, P 82.69
1dbw_A126 Transcriptional regulatory protein FIXJ; doubly wo 82.65
3cnb_A143 DNA-binding response regulator, MERR family; signa 82.53
1k68_A140 Phytochrome response regulator RCPA; phosphorylate 81.95
2b4a_A138 BH3024; flavodoxin-like fold, structural genomics, 81.1
1yio_A208 Response regulatory protein; transcription regulat 81.09
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A Back     alignment and structure
Probab=100.00  E-value=7.3e-40  Score=255.74  Aligned_cols=206  Identities=45%  Similarity=0.817  Sum_probs=186.0

Q ss_pred             CCCCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995           2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV   81 (211)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~   81 (211)
                      .||++.|++..+.....+|...+.++....+.++.+|+|+|||+|+|+.....|.+.+++..++|.|++|.++.+++.++
T Consensus         6 ~~~~~~p~~~~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~GDSit~g~~~~~~~~~~~~~~~v~n~g~~G~t~~~~~~~~   85 (229)
T 1fxw_F            6 SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRL   85 (229)
T ss_dssp             CCGGGSCCCCCCSSSSCHHHHHHHHHHHHHHHCCCSEEEEESHHHHGGGGSHHHHHHTGGGTEEEEECTTCCHHHHHHHH
T ss_pred             cCCCCCCCCCCCcCccchHHHHHHHHHHHcccCCCCEEEEecchhcCCCCchhHHHHcCCCcceeeccCcchHHHHHHHH
Confidence            59999999999999999999999999988888999999999999999877667998888899999999999999999999


Q ss_pred             hcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhC
Q psy1995          82 QDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLS  161 (211)
Q Consensus        82 ~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~  161 (211)
                      +...+...+||+|||++|+||.+.+.+++.+++.++++.+++.+|+++|++++++|....+...+..+..+|+.++++|+
T Consensus        86 ~~~~l~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~~i~~l~~~~p~~~iil~~~~p~~~~~~~~~~~~~~~n~~l~~~a~  165 (229)
T 1fxw_F           86 KNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLP  165 (229)
T ss_dssp             HTTTTSSCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSS
T ss_pred             HcCccccCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCCCCCchhhHHHHHHHHHHHHHHHHh
Confidence            87656567999999999999998889999999999999999999999999999998876554556789999999999998


Q ss_pred             CCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995         162 PAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE  210 (211)
Q Consensus       162 ~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~  210 (211)
                      +   ..++.|+|++..+.+.++.....++.||+|||++||++||+.|.+
T Consensus       166 ~---~~~v~~iD~~~~~~~~~g~~~~~~~~DgvHpn~~G~~~~a~~l~~  211 (229)
T 1fxw_F          166 K---LANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHE  211 (229)
T ss_dssp             S---SSSEEEECCCCSCBCTTSCBCTTTBTTSSSBCHHHHHHHHHHHHH
T ss_pred             c---CCCeEEEeCHHHhhccCCCcchhhcCCCCCcCHHHHHHHHHHHHH
Confidence            4   389999999999887666666677899999999999999998864
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A* Back     alignment and structure
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3 Back     alignment and structure
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis} Back     alignment and structure
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str} Back     alignment and structure
>3mil_A Isoamyl acetate-hydrolyzing esterase; SGNH-hydrolase, hydrolase; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9 Back     alignment and structure
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0 Back     alignment and structure
>1vjg_A Putative lipase from the G-D-S-L family; structural genomics center for structural genomics, JCSG, protein structure INI PSI, hydrolase; 2.01A {Nostoc SP} SCOP: c.23.10.6 PDB: 1z8h_A Back     alignment and structure
>2q0q_A ARYL esterase; SGNH hydrolase, oligomeric enzyme, acyl transfer, ARYL ester hydrolase; 1.50A {Mycobacterium smegmatis} PDB: 2q0s_A* Back     alignment and structure
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A* Back     alignment and structure
>1yzf_A Lipase/acylhydrolase; structural GENO PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.90A {Enterococcus faecalis} SCOP: c.23.10.5 Back     alignment and structure
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum} Back     alignment and structure
>3bzw_A Putative lipase; protein structure initiative II, (PSI-II), NYSGXRC, structural genomics; 1.87A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.23.10.9 Back     alignment and structure
>1k7c_A Rhamnogalacturonan acetylesterase; N-linked glycosylation, SGNH-hydrolase, hydrolase; HET: NAG MAN; 1.12A {Aspergillus aculeatus} SCOP: c.23.10.4 PDB: 1dex_A* 1deo_A* 1pp4_A* 3c1u_A* Back     alignment and structure
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP} Back     alignment and structure
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8 Back     alignment and structure
>1esc_A Esterase; 2.10A {Streptomyces scabiei} SCOP: c.23.10.1 PDB: 1esd_A 1ese_A Back     alignment and structure
>2wao_A Endoglucanase E; plant cell WALL degradation, carbohydrate metabolism, polysaccharide degradation, esterase, hydrolase, cellulases; HET: BGC; 1.80A {Clostridium thermocellum} PDB: 2wab_A* Back     alignment and structure
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus} Back     alignment and structure
>2w9x_A AXE2A, CJCE2B, putative acetyl xylan esterase; carbohydrate esterase family 2, hydrolase; 2.00A {Cellvibrio japonicus} Back     alignment and structure
>4i8i_A Hypothetical protein; 5-stranded beta sheet flanked by 8 helices fold, structural joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides uniformis} Back     alignment and structure
>3kvn_X Esterase ESTA; beta barrel, alpha-beta-alpha motif, cell membrane, cell out membrane, hydrolase, membrane, transmembrane; HET: C8E; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>1zmb_A Acetylxylan esterase related enzyme; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.61A {Clostridium acetobutylicum} SCOP: c.23.10.7 Back     alignment and structure
>2apj_A Putative esterase; AT4G34215, CAR esterase family 6, structural genomics, protein structure initiative, CESG; HET: SEB; 1.60A {Arabidopsis thaliana} SCOP: c.23.10.7 Back     alignment and structure
>3bma_A D-alanyl-lipoteichoic acid synthetase; structural genomics, D-alanyl-lipoteichoic acid biosynthesis structure initiative, PSI-2; 2.24A {Streptococcus pneumoniae} Back     alignment and structure
>3pt5_A NANS (YJHS), A 9-O-acetyl N-acetylneuraminic acid; SGNH hydrolase, 9-O-acetyl N-acetylneuraminic acid esterase, structural genomics; 1.60A {Escherichia coli O157} Back     alignment and structure
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A Back     alignment and structure
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis} Back     alignment and structure
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5} Back     alignment and structure
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima} Back     alignment and structure
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii} Back     alignment and structure
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Back     alignment and structure
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP} Back     alignment and structure
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0 Back     alignment and structure
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A Back     alignment and structure
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis} Back     alignment and structure
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0 Back     alignment and structure
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12} Back     alignment and structure
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans} Back     alignment and structure
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae} Back     alignment and structure
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} Back     alignment and structure
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0 Back     alignment and structure
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0 Back     alignment and structure
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1} Back     alignment and structure
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0 Back     alignment and structure
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0 Back     alignment and structure
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0 Back     alignment and structure
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A* Back     alignment and structure
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea} Back     alignment and structure
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1 Back     alignment and structure
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1 Back     alignment and structure
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 211
d1es9a_212 c.23.10.3 (A:) Platelet-activating factor acetylhy 7e-39
d1fxwf_212 c.23.10.3 (F:) Platelet-activating factor acetylhy 4e-38
d2hsja1211 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 1e-10
d3dc7a1207 c.23.10.9 (A:18-224) Uncharacterized protein Lp332 9e-08
d1vjga_201 c.23.10.6 (A:) Hypothetical protein alr1529 {Nosto 0.001
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]} Length = 212 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: Acetylhydrolase
domain: Platelet-activating factor acetylhydrolase
species: Cow (Bos taurus), alpha1 [TaxId: 9913]

 Score =  131 bits (329), Expect = 7e-39
 Identities = 89/209 (42%), Positives = 125/209 (59%), Gaps = 3/209 (1%)

Query: 3   NPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPL 62
           NP   P   Q   GD +W + H   +  +K+ EPE+VFIGDSL+  + Q +IW  LF PL
Sbjct: 2   NPASKPTPVQDVQGDGKWMSLHHRFVADSKDKEPEVVFIGDSLVQLMHQCEIWRELFSPL 61

Query: 63  HCLAFGIGGDKVEHCLWRVQDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQ 122
           H L FGIGGD  +H LWR+++G L+ I+PK++V+ VGTNN   +AE +  GI  +++LV 
Sbjct: 62  HALNFGIGGDSTQHVLWRLENGELEHIRPKIVVVWVGTNNHGHTAEQVTGGIKAIVQLVN 121

Query: 123 TKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLSPAPLGPKVHLIQHNKDEIISK 182
            +QPQA VVVL LLPRG+  N L  KN   N+++   L+     P+ H +  +   + S 
Sbjct: 122 ERQPQARVVVLGLLPRGQHPNPLREKNRRVNELVRAALAG---HPRAHFLDADPGFVHSD 178

Query: 183 DEISQGDFYDYLHLTESGYRKVFTPVYEK 211
             IS  D YDYLHL+  GY  V   ++  
Sbjct: 179 GTISHHDMYDYLHLSRLGYTPVCRALHSL 207
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]} Length = 212 Back     information, alignment and structure
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]} Length = 211 Back     information, alignment and structure
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Length = 207 Back     information, alignment and structure
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]} Length = 201 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query211
d1fxwf_212 Platelet-activating factor acetylhydrolase {Cow (B 100.0
d1es9a_212 Platelet-activating factor acetylhydrolase {Cow (B 100.0
d2hsja1211 Uncharacterized protein SP1450 {Streptococcus pneu 100.0
d1yzfa1195 Lipase/acylhydrolase {Enterococcus faecalis [TaxId 99.95
d1jrla_179 Thioesterase I, TAP {Escherichia coli [TaxId: 562] 99.95
d1vjga_201 Hypothetical protein alr1529 {Nostoc sp. pcc 7120 99.94
d2o14a2208 Hypothetical protein YxiM {Bacillus subtilis [TaxI 99.94
d3dc7a1207 Uncharacterized protein Lp3323 {Lactobacillus plan 99.93
d1k7ca_233 Rhamnogalacturonan acetylesterase {Fungus (Aspergi 99.9
d3bzwa1248 Uncharacterized protein BT2961 {Bacteroides thetai 99.86
d1esca_302 Esterase {Streptomyces scabies [TaxId: 1930]} 99.82
d1zmba1282 Acetylxylan esterase related enzyme {Clostridium a 98.34
d2apja1244 Putative acetylxylan esterase At4g34215 {Thale cre 98.18
d1a04a2138 Nitrate/nitrite response regulator (NarL), receive 87.65
d1yioa2128 Response regulatory protein StyR, N-terminal domai 81.95
d1krwa_123 NTRC receiver domain {Salmonella typhimurium [TaxI 80.63
>d1fxwf_ c.23.10.3 (F:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha2 [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: SGNH hydrolase
family: Acetylhydrolase
domain: Platelet-activating factor acetylhydrolase
species: Cow (Bos taurus), alpha2 [TaxId: 9913]

Probab=100.00  E-value=2.6e-45  Score=282.08  Aligned_cols=206  Identities=45%  Similarity=0.817  Sum_probs=190.5

Q ss_pred             CCCCcccccCccCCCCccHHHHHHHHHHHhhcCCCcEEEEccchhcccCcchhHHhhcCCcceEEeccCCchhHHHHHHh
Q psy1995           2 ANPCIVPQKNQVDLGDNRWYNQHEHQLQLAKESEPELVFIGDSLISFLTQTQIWHNLFEPLHCLAFGIGGDKVEHCLWRV   81 (211)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~il~iGDS~t~g~~~~~~~~~~~~~~~~~n~g~~G~~~~~~~~~~   81 (211)
                      -|||+.|.+..+..++++|++.+..++...+.++++|+|+|||+|+|+.....|.++|.+..++|+|++|.++.++++|+
T Consensus         1 ~~p~~~p~~~~~~~~~~~W~~~~~~~~~~~~~~~~~vvf~GDSit~g~~~~~~~~~~~~~~~v~N~Gi~G~tt~~~~~r~   80 (212)
T d1fxwf_           1 SNPAAIPHAAEDIQGDDRWMSQHNRFVLDCKDKEPDVLFVGDSMVQLMQQYEIWRELFSPLHALNFGIGGDTTRHVLWRL   80 (212)
T ss_dssp             CCGGGSCCCCCCSSSSCHHHHHHHHHHHHHHHCCCSEEEEESHHHHGGGGSHHHHHHTGGGTEEEEECTTCCHHHHHHHH
T ss_pred             CCCCCCCCCcccccCCchHHHHHHHHHHHhccCCCCEEEEeChHHhCCcccchHHHHhcccceEEcccHhhhhHHHHHHH
Confidence            39999999999999999999999999999999999999999999999988788999999999999999999999999999


Q ss_pred             hcCCCCCCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEEeccCCCCccchhhHHHHHHHHHHHHHhC
Q psy1995          82 QDGILDSIKPKVIVILVGTNNTEDSAENIADGILELIRLVQTKQPQADVVVLELLPRGKLINKLWTKNLATNQILADKLS  161 (211)
Q Consensus        82 ~~~~~~~~~pd~Vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~~~~~~~~~~~n~~l~~~~~  161 (211)
                      +...+...+||+|||++|+||.+.+++++.++++++++.+++++|+++|++++++|+...+........++|+.+++.++
T Consensus        81 ~~~~l~~~~P~~vvi~~G~ND~~~~~~~~~~~~~~~i~~i~~~~p~~~Ii~~~~~P~~~~~~~~~~~~~~~n~~l~~~~a  160 (212)
T d1fxwf_          81 KNGELENIKPKVIVVWVGTNNHENTAEEVAGGIEAIVQLINTRQPQAKIIVLGLLPRGEKPNPLRQKNAKVNQLLKVSLP  160 (212)
T ss_dssp             HTTTTSSCCCSEEEEECCTTCTTSCHHHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSSCCHHHHHHHHHHHHHHHHSS
T ss_pred             HhhhhccCCCCEEEEEecccccccccHHHHHHHHHHHHHHHHHhccccccceeecccccccchHHHHHHHHHHHHHHHHH
Confidence            87677678999999999999999999999999999999999999999999999999887776666778899999987766


Q ss_pred             CCCCCCCeEEEeCCccccccCCCCccCCCCCCCCCCHHHHHHHhhhhhc
Q psy1995         162 PAPLGPKVHLIQHNKDEIISKDEISQGDFYDYLHLTESGYRKVFTPVYE  210 (211)
Q Consensus       162 ~~~~~~~v~~iD~~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~  210 (211)
                      +   ..++.|+|++..|.++++.....++.||+|||++||++||+.|.+
T Consensus       161 ~---~~~v~~iD~~~~l~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~i~~  206 (212)
T d1fxwf_         161 K---LANVQLLDTDGGFVHSDGAISCHDMFDFLHLTGGGYAKICKPLHE  206 (212)
T ss_dssp             S---SSSEEEECCCCSCBCTTSCBCTTTBTTSSSBCHHHHHHHHHHHHH
T ss_pred             H---hcCceEeeccHHHhcccCCCChhhCCCCCCCCHHHHHHHHHHHHH
Confidence            6   589999999999988888878888899999999999999999875
>d1es9a_ c.23.10.3 (A:) Platelet-activating factor acetylhydrolase {Cow (Bos taurus), alpha1 [TaxId: 9913]} Back     information, alignment and structure
>d2hsja1 c.23.10.3 (A:1-211) Uncharacterized protein SP1450 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1yzfa1 c.23.10.5 (A:1-195) Lipase/acylhydrolase {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1jrla_ c.23.10.5 (A:) Thioesterase I, TAP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vjga_ c.23.10.6 (A:) Hypothetical protein alr1529 {Nostoc sp. pcc 7120 [TaxId: 103690]} Back     information, alignment and structure
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1k7ca_ c.23.10.4 (A:) Rhamnogalacturonan acetylesterase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1esca_ c.23.10.1 (A:) Esterase {Streptomyces scabies [TaxId: 1930]} Back     information, alignment and structure
>d1zmba1 c.23.10.7 (A:1-282) Acetylxylan esterase related enzyme {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d2apja1 c.23.10.7 (A:17-260) Putative acetylxylan esterase At4g34215 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure