Psyllid ID: psy2017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MGKGEYEKEYSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFADDPAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLELHRT
Secondary Structure (PSIPRED)
ccccccccccccccEEcccccccccccccccccccccccccccccccEEEccccEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccEEEEEccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEEEEEEcccccccccccccccccEcccccccccEEEEEccccEEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEcccccEEcccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
mgkgeyekeysfqtislfipeppqgsylcprrngyfahpdekVCNIFYnciegdsteiicptglhfdeytgtcvwpesagrigcgepegmtlkdgftcpkeqkasssgqsvahpvyahptdcqkfyvclngvtpreqgcqvgevyneesqkcdapenvpgcenwfaddpaaapqaakkpgkkirrrrnaafkcpqkngqyedpvqcdkyyecfdgqateklcpdglvfdplnrkinkcdqpfnvecgdrlelhrt
Flexible Loop (DISEMBL)
MGKGEYEKEYSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFADDPAAapqaakkpgkkirrrrnaafkcpqkngqyedpvQCDKYYECFDGQATEKLCPDGLVFDPLNrkinkcdqpfnvecgdrlelhrt
Low Complexity Region (SEG)
MGKGEYEKEYSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFaddpaaapqaakkpgkkIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLELHRT
Disordered region (IsUnstruct)
*********YSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGE**************************HPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYN**************CENWF**********************************YEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECG********
Disordered Region (DISOPRED)
********EYSFQTIS************CPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFADDPAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVE**********
Disordered Region (DISEMBL)
*********YSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTC**************HPVYAHPTDCQKFYVCLNGVTPREQGCQVGEV**********PENVPGCENWFADDPA***************RRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLELHRT
Disordered Region (DISPRO)
***GEYEKEYSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIG**************C*****ASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCE*************************NAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDR******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGKGEYEKEYSFQTISLFIPEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFADDPAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLELHRT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9W5U2	2286	Probable chitinase 3 OS=D	no	N/A	0.737	0.082	0.276	1e-06

>sp|Q9W5U2|CHIT3_DROME Probable chitinase 3 OS=Drosophila melanogaster GN=Cht3 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 99/246 (40%), Gaps = 58/246 (23%)

Query: 35  YFAHPDEKVCNIFYNCI-EGDSTEIICPTGLHFDEYTGTCVWPESA-------GRIGCGE 86
           +FA  D   CN +Y+C   G+  +  CP+GLH++     C WP SA         +    
Sbjct: 697 FFA--DSNNCNAYYHCFFAGELQQQFCPSGLHWNNEAKGCDWPSSAQCSLKLDQHLSTSY 754

Query: 87  PEGM-TLKDGFTCPKEQKASSS-------GQSVAHPVYAHPT-------------DCQKF 125
           P  + T K   T  K  K  S          + + P Y  PT             +C+K+
Sbjct: 755 PNPIQTSKKPETTLKPNKKPSEISTHHQVNSTSSRPQYMRPTILECTEGDYYPHRNCRKY 814

Query: 126 YVCLN-GVTPREQGCQVGEVYNEESQK-CDAPENVPGCENWFADDPAAAPQAAKKPGKKI 183
           Y+C+N  + P E G   G+++ +  +K CD PENV  C                K   KI
Sbjct: 815 YICVNKALVPSECG---GDLHWDGIKKLCDWPENVQ-C-------------VTSKKYLKI 857

Query: 184 RRRRNAAFKCP---QKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQ 240
            +  +A  + P   +K   Y  P  C KY  C   +     CP GL +   N +I  CD 
Sbjct: 858 IKSSSANEEDPCKGEKRVPY--PGNCSKYLFCLWNRLQASDCPPGLHY---NERIGNCDW 912

Query: 241 PFNVEC 246
           P   +C
Sbjct: 913 PAAAKC 918

Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
253795461	245	cuticular protein analogous to peritroph	0.458	0.477	0.782	1e-65
242018020	529	chitin binding peritrophin-A, putative [	0.580	0.279	0.758	9e-65
312381781	234	hypothetical protein AND_05846 [Anophele	0.356	0.388	0.744	3e-61
170028723	234	conserved hypothetical protein [Culex qu	0.337	0.367	0.724	8e-60
270297210	237	cuticular protein analogous to peritroph	0.619	0.666	0.662	5e-59
157131878	234	hypothetical protein AaeL_AAEL012245 [Ae	0.352	0.384	0.710	7e-59
347964894	234	AGAP000989-PA [Anopheles gambiae str. PE	0.435	0.474	0.700	2e-58
389610677	237	obstructor-A [Papilio polytes]	0.603	0.649	0.681	3e-57
383852290	246	PREDICTED: uncharacterized protein LOC10	0.576	0.597	0.709	3e-57
389608401	237	obstructor-A [Papilio xuthus]	0.603	0.649	0.687	3e-57

>gi|253795461|ref|NP_001156724.1| cuticular protein analogous to peritrophins 3-A1 precursor [Acyrthosiphon pisum]

 Score =  255 bits (652), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 115/147 (78%), Positives = 127/147 (86%)

Query: 23  PQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRI 82
           PQ SYLCPRRNGYFAHPDEKVCNIFYNCIEGD TEI+CP GLHFDEY G+C WP +AGR 
Sbjct: 86  PQPSYLCPRRNGYFAHPDEKVCNIFYNCIEGDGTEIVCPNGLHFDEYAGSCAWPATAGRS 145

Query: 83  GCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVG 142
           GC E + M LKDGFTCPK++  +S GQ+VAHPV+AHP DCQKFYVCLNG+TPREQGC  G
Sbjct: 146 GCNESDDMKLKDGFTCPKDKAFNSRGQNVAHPVFAHPDDCQKFYVCLNGITPREQGCSTG 205

Query: 143 EVYNEESQKCDAPENVPGCENWFADDP 169
           EV+NEESQKCD PENV GCENW+ DDP
Sbjct: 206 EVFNEESQKCDQPENVAGCENWYKDDP 232

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018020|ref|XP_002429481.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis] gi|212514415|gb|EEB16743.1| chitin binding peritrophin-A, putative [Pediculus humanus corporis]

 Score =  252 bits (644), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 113/149 (75%), Positives = 132/149 (88%), Gaps = 1/149 (0%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+ ++LCPRRNGYFAHPDE VCNIFYNCIEG++TEI+CPTGLHFDEY+GTCVWP++AG
Sbjct: 357 QPPKSNHLCPRRNGYFAHPDESVCNIFYNCIEGEATEIVCPTGLHFDEYSGTCVWPDAAG 416

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GCG  E   LKDGF+CPKE +  S GQ+VAHP+YAHP DCQKFYVCLNGVTPREQGC 
Sbjct: 417 RTGCGNKEA-KLKDGFSCPKEIQTDSRGQAVAHPMYAHPEDCQKFYVCLNGVTPREQGCS 475

Query: 141 VGEVYNEESQKCDAPENVPGCENWFADDP 169
           +G+VYNEE+ KCD PENVPGCE+W+ DDP
Sbjct: 476 LGQVYNEETGKCDEPENVPGCEDWYKDDP 504

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381781|gb|EFR27446.1| hypothetical protein AND_05846 [Anopheles darlingi]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 108/145 (74%), Positives = 123/145 (84%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+G+ LCPRRNG+FAHPD  VCN+FYNCIEGD+TEI C  GLHFDEYTGTCVWP  AG
Sbjct: 82  QPPRGNNLCPRRNGFFAHPDPAVCNVFYNCIEGDATEITCTAGLHFDEYTGTCVWPNDAG 141

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GC       LKDGFTCPKEQK   +GQ+VAHP YAHPTDCQ+FYVCLNGV PR+ GCQ
Sbjct: 142 RQGCNPGANKKLKDGFTCPKEQKTDEAGQAVAHPKYAHPTDCQRFYVCLNGVEPRDLGCQ 201

Query: 141 VGEVYNEESQKCDAPENVPGCENWF 165
           VGEVYNEE+++CDAPENVPGCE+W+
Sbjct: 202 VGEVYNEETERCDAPENVPGCEDWY 226

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028723|ref|XP_001842244.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167877929|gb|EDS41312.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  236 bits (602), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 105/145 (72%), Positives = 121/145 (83%)

Query: 23  PQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRI 82
           P+G+ LCPR+NG+FAHPD  VCN+FYNCIEG++ EI C +GLHFDEYTGTCVWP  AGR 
Sbjct: 84  PKGNSLCPRKNGFFAHPDAAVCNVFYNCIEGEANEITCTSGLHFDEYTGTCVWPNDAGRQ 143

Query: 83  GCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVG 142
           GC       LKDGFTCPKEQK   +GQSVAHP YAHPTDCQ+FYVCLNGV PR+ GCQ G
Sbjct: 144 GCNPGTNKKLKDGFTCPKEQKTDEAGQSVAHPKYAHPTDCQRFYVCLNGVEPRDLGCQAG 203

Query: 143 EVYNEESQKCDAPENVPGCENWFAD 167
           EVYNEE+++CDAPENVPGCE+W+ D
Sbjct: 204 EVYNEETERCDAPENVPGCEDWYKD 228

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270297210|ref|NP_001161910.1| cuticular protein analogous to peritrophins 3-A1 precursor [Tribolium castaneum] gi|268309018|gb|ACY95475.1| cuticular protein analogous to peritrophins 3-A1 [Tribolium castaneum] gi|270000882|gb|EEZ97329.1| hypothetical protein TcasGA2_TC011140 [Tribolium castaneum]

 Score =  233 bits (594), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 108/163 (66%), Positives = 129/163 (79%), Gaps = 5/163 (3%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+ ++ CPRRNG+FAHPD  VCN FYNCIEG+ TEI C  GLHFDE+TGTCVWP++AG
Sbjct: 80  QPPKPNHFCPRRNGFFAHPDPAVCNKFYNCIEGEHTEITCTAGLHFDEFTGTCVWPDAAG 139

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GC +     LKDGF CPK+ +  ++GQ V HP YAHPTDCQ+FYVCLNG  PR+ GCQ
Sbjct: 140 RQGCNKDVTNKLKDGFECPKDGQTDANGQLVVHPKYAHPTDCQRFYVCLNGQEPRDLGCQ 199

Query: 141 VGEVYNEESQKCDAPENVPGCENWFADDPAAAPQAAKKPGKKI 183
           VGEVYNEESQ+CDAPENVPGCE+W+ D+PA A     KP KK+
Sbjct: 200 VGEVYNEESQRCDAPENVPGCEDWYKDEPAPA-----KPAKKV 237

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131878|ref|XP_001662353.1| hypothetical protein AaeL_AAEL012245 [Aedes aegypti] gi|108871383|gb|EAT35608.1| AAEL012245-PA [Aedes aegypti]

 Score =  233 bits (593), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 121/145 (83%)

Query: 23  PQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRI 82
           P+G+ LCPR+NG+FAHPD  VCN+FYNCIEG++ EI C  GLHFDEY+GTCVWP  AGR 
Sbjct: 84  PKGNALCPRKNGFFAHPDPAVCNVFYNCIEGEANEITCTAGLHFDEYSGTCVWPNDAGRQ 143

Query: 83  GCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVG 142
           GC       LKDGFTCPKEQK   +GQ+VAHP +AHPTDCQ+FYVCLNGV PR+ GCQVG
Sbjct: 144 GCNPGANKKLKDGFTCPKEQKTDEAGQTVAHPKFAHPTDCQRFYVCLNGVEPRDLGCQVG 203

Query: 143 EVYNEESQKCDAPENVPGCENWFAD 167
           EVYNEE+++CDAPENVPGCE+W+ D
Sbjct: 204 EVYNEETERCDAPENVPGCEDWYKD 228

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347964894|ref|XP_309184.5| AGAP000989-PA [Anopheles gambiae str. PEST] gi|333466527|gb|EAA04933.5| AGAP000989-PA [Anopheles gambiae str. PEST]

 Score =  231 bits (589), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/147 (70%), Positives = 121/147 (82%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+G+ LCPRRNG+FAHPD  VCN+FYNCIEG++ EI C  GLHFDEYTGTCVWP  AG
Sbjct: 82  QPPRGNNLCPRRNGFFAHPDPAVCNVFYNCIEGEANEITCTAGLHFDEYTGTCVWPNDAG 141

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GC       + DGFTCPK+QK   +GQ VAHP YAHPTDCQ+FYVCLNGV PR+ GCQ
Sbjct: 142 RQGCNPGANSKIFDGFTCPKDQKTDEAGQVVAHPKYAHPTDCQRFYVCLNGVEPRDLGCQ 201

Query: 141 VGEVYNEESQKCDAPENVPGCENWFAD 167
           VGEVYNEE+++CDAPENVPGCE+W+ +
Sbjct: 202 VGEVYNEETERCDAPENVPGCEDWYKE 228

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389610677|dbj|BAM18950.1| obstructor-A [Papilio polytes]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/157 (68%), Positives = 127/157 (80%), Gaps = 3/157 (1%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+ +  CPRRNG+FAHPD  +CN+F+NCIEGD+TE+ C  GLHFDEY+GTCVWP+SAG
Sbjct: 80  QPPKPNNQCPRRNGFFAHPDASICNVFFNCIEGDATEVKCTAGLHFDEYSGTCVWPDSAG 139

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GC   E  T KDGF CPKEQ   + GQ+VAHP + HP DCQ+FYVCLNGV PR+ GCQ
Sbjct: 140 RQGCQVQEKKT-KDGFECPKEQVVDAQGQAVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQ 198

Query: 141 VGEVYNEESQKCDAPENVPGCENWF--ADDPAAAPQA 175
           VGEVYNEESQKCDAPENV GCE+W+  A+D A AP+A
Sbjct: 199 VGEVYNEESQKCDAPENVRGCEDWYKDAEDAAPAPKA 235

Source: Papilio polytes

Species: Papilio polytes

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852290|ref|XP_003701661.1| PREDICTED: uncharacterized protein LOC100876076 [Megachile rotundata]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 105/148 (70%), Positives = 119/148 (80%), Gaps = 1/148 (0%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PPQ +  CPRRNG+FAHPD  VCNIFYNCI+G++ EI C TGLHFDEY+GTCVWP+SAG
Sbjct: 96  QPPQPTKKCPRRNGFFAHPDPSVCNIFYNCIDGEAIEITCTTGLHFDEYSGTCVWPDSAG 155

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GCG   G  LKDGF CPKE +  + G  V HP +AHP DCQKFYVCLNGVTPREQGC 
Sbjct: 156 REGCGVV-GKKLKDGFECPKESQVDTRGMVVDHPKFAHPDDCQKFYVCLNGVTPREQGCS 214

Query: 141 VGEVYNEESQKCDAPENVPGCENWFADD 168
            G VYNEE Q+CDAPENVPGCE+W+ DD
Sbjct: 215 DGTVYNEEQQRCDAPENVPGCEDWYKDD 242

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389608401|dbj|BAM17810.1| obstructor-A [Papilio xuthus]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/157 (68%), Positives = 126/157 (80%), Gaps = 3/157 (1%)

Query: 21  EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
           +PP+ +  CPRRNG+FAHPD  VCN+FYNCIEGD+ E+ C  GLHFDEY+GTCVWP+SAG
Sbjct: 80  QPPKPTSQCPRRNGFFAHPDPSVCNVFYNCIEGDAIEVKCTAGLHFDEYSGTCVWPDSAG 139

Query: 81  RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
           R GC   E  T KDGF CPKEQ   + GQ+VAHP + HP DCQ+FYVCLNGV PR+ GCQ
Sbjct: 140 RQGCQVQEKKT-KDGFECPKEQLVDAQGQAVAHPKFPHPNDCQRFYVCLNGVEPRDLGCQ 198

Query: 141 VGEVYNEESQKCDAPENVPGCENWF--ADDPAAAPQA 175
           VGEVYNEESQKCDAPENV GCE+W+  A+D A AP+A
Sbjct: 199 VGEVYNEESQKCDAPENVRGCEDWYKDAEDAAPAPKA 235

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
FB|FBgn0031097	237	obst-A "obstructor-A" [Drosoph	0.564	0.607	0.650	7.8e-55
FB|FBgn0027600	337	obst-B "obstructor-B" [Drosoph	0.537	0.406	0.441	1.1e-32
FB|FBgn0026077	258	Gasp "Gasp" [Drosophila melano	0.525	0.519	0.362	1.8e-23
FB|FBgn0031737	249	obst-E "obstructor-E" [Drosoph	0.525	0.538	0.317	2e-17
FB|FBgn0036947	326	obst-F "obstructor-F" [Drosoph	0.211	0.165	0.362	5e-09
WB|WBGene00010351	1319	cbd-1 [Caenorhabditis elegans	0.454	0.087	0.286	1.5e-08
FB|FBgn0038492	2112	Mur89F "Mucin related 89F" [Dr	0.286	0.034	0.358	2.7e-08
FB|FBgn0036203	1514	Muc68D "Mucin 68D" [Drosophila	0.721	0.121	0.274	4.2e-08
FB|FBgn0036361	316	CG10154 [Drosophila melanogast	0.419	0.338	0.314	6.1e-08
FB|FBgn0250907	2286	Cht3 "Chitinase 3" [Drosophila	0.756	0.084	0.263	2e-07

FB|FBgn0031097 obst-A "obstructor-A" [Drosophila melanogaster (taxid:7227)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 95/146 (65%), Positives = 112/146 (76%)

Query:    21 EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
             + P+ S  CPR+NG+FAHPD  VCNIFYNCIEGD+ E  C  GLHFDEY+GTCVWP++A 
Sbjct:    85 QEPKSSKYCPRKNGFFAHPDPAVCNIFYNCIEGDALETKCTVGLHFDEYSGTCVWPDTAK 144

Query:    81 RIGCGEPEGMTLKDGFTCPKEQ-KASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGC 139
             R GC  PE  T + GF CPK+Q K    GQ V HP Y HPTDCQKFYVCLNG  PR+ GC
Sbjct:   145 REGCN-PEQRTSETGFVCPKDQPKTDDRGQVVTHPKYPHPTDCQKFYVCLNGEDPRDLGC 203

Query:   140 QVGEVYNEESQKCDAPENVPGCENWF 165
             Q+GEVYN+ ++ CDAPENVPGCE+W+
Sbjct:   204 QLGEVYNDATEMCDAPENVPGCEDWY 229

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0008061 "chitin binding" evidence=IDA;RCA

GO:0005615 "extracellular space" evidence=IDA

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0010716 "negative regulation of extracellular matrix disassembly" evidence=IMP

FB|FBgn0027600 obst-B "obstructor-B" [Drosophila melanogaster (taxid:7227)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 64/145 (44%), Positives = 86/145 (59%)

Query:    21 EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
             + PQ S  CPR+NGYF H    +C+ FY C++G    I CP GL F+  TG C WP+  G
Sbjct:   146 QTPQPSLHCPRKNGYFGHEKPGICDKFYFCVDGQFNMITCPAGLVFNPKTGICGWPDQVG 205

Query:    81 RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
               GC   +   + D F CPK  ++ +    V HP YA P DCQ FYVC+NG  PR  GC+
Sbjct:   206 VTGCKSED---VFD-FECPKVNESIA----VTHPRYADPNDCQFFYVCVNGDLPRRNGCK 257

Query:   141 VGEVYNEESQKCDAPENVPGCENWF 165
             +G+V++EE + CD    VP C +W+
Sbjct:   258 LGQVFDEEKETCDWARKVPDCADWY 282

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA;RCA

FB|FBgn0026077 Gasp "Gasp" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 54/149 (36%), Positives = 83/149 (55%)

Query:    21 EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
             EPP  +  C R  G F  PDE  C++F+NC  G+ +   C  GL +D     C+W +   
Sbjct:    85 EPPITTPHCSRLYGIF--PDENKCDVFWNCWNGEPSRYQCSPGLAYDRDARVCMWADQVP 142

Query:    81 RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQ 140
                C   E   + +GF+CP   + +++G    H   AHP DC+K+Y+CL GV  RE GC 
Sbjct:   143 E--CKNEE---VANGFSCPAAGELANAGSFSRH---AHPEDCRKYYICLEGVA-REYGCP 193

Query:   141 VGEVY----NEESQKCDAPENVPGCENWF 165
             +G V+    ++ +  C+ PE+VPGCE+++
Sbjct:   194 IGTVFKIGDSDGTGNCEDPEDVPGCEDYY 222

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0008061 "chitin binding" evidence=IEA;RCA;NAS

GO:0005576 "extracellular region" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

FB|FBgn0031737 obst-E "obstructor-E" [Drosophila melanogaster (taxid:7227)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 47/148 (31%), Positives = 69/148 (46%)

Query:    21 EPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
             +P  G+  CPR+ G++ + D   C ++ NC  G ++   CP GL F+E T  C WP+   
Sbjct:    85 QPANGTEECPRQFGFYPNGDATKCGVYRNCAHGVASLTKCPEGLAFNEETYQCDWPDLVE 144

Query:    81 RIGCGEPEGMTLKDGFTCPKEQKASSSGQSVAH--P-----VYAHPTDCQKFYVCLNGVT 133
                C     +    GF CP    A  S  +     P      Y HP  C+K++VC+NG  
Sbjct:   145 --SCNAEAYL----GFNCPAADSADDSAAAAVDVSPEGELSYYRHPQTCKKYFVCVNG-H 197

Query:   134 PREQGCQVGEVYNEESQKCDAPENVPGC 161
             PR   C     +N +++ CD    VP C
Sbjct:   198 PRLYNCGKYLAFNSQTKLCDFYNKVPEC 225

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA;RCA

FB|FBgn0036947 obst-F "obstructor-F" [Drosophila melanogaster (taxid:7227)]

 Score = 96 (38.9 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
 Identities = 21/58 (36%), Positives = 25/58 (43%)

Query:   190 AFKCPQKNGQY-EDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVEC 246
             A  CP     Y   P  C KYY C  G      CP GL +D   +K   C+   NV+C
Sbjct:   269 ALTCPSTKQSYMSHPEDCSKYYICIGGMPVLTSCPKGLFWD---QKSGFCEMEKNVKC 323

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA;RCA

WB|WBGene00010351 cbd-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 123 (48.4 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
 Identities = 35/122 (28%), Positives = 49/122 (40%)

Query:    43 VCNIFY-NCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTLKDGFTCPKE 101
             VC+  Y  C  G S    C     F      C+  ES     C  P+  ++K  +T   +
Sbjct:  1121 VCSSKYLRCSYGASKLQQCSEDRVFSNDKLECIVRESVS--ACTVPKNPSIKKYYTS-ND 1177

Query:   102 QKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGC 161
             Q A   G+     +Y +  DC     C  G       CQ    +N+ + KCD P+ V GC
Sbjct:  1178 QSAFCDGKEDG--LYRNERDCSAILQCFGGELFEHPSCQSSLAFNQLTGKCDYPQKVSGC 1235

Query:   162 EN 163
             EN
Sbjct:  1236 EN 1237

GO:0005576 "extracellular region" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071944 "cell periphery" evidence=IDA

FB|FBgn0038492 Mur89F "Mucin related 89F" [Drosophila melanogaster (taxid:7227)]

 Score = 114 (45.2 bits), Expect = 2.7e-08, Sum P(3) = 2.7e-08
 Identities = 28/78 (35%), Positives = 37/78 (47%)

Query:    87 PEGMTLKDGFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLN-GVTPREQG--CQVGE 143
             PE  T     T  K   A +  +       A P DC+K+Y C+N G + R+    C  G 
Sbjct:  1455 PESTTQPPSTTTMKPLPAGT--ECTGEGYMADPEDCRKYYRCINAGASYRKYNFTCPKGT 1512

Query:   144 VYNEESQKCDAPENVPGC 161
              +NEE Q CD  EN+P C
Sbjct:  1513 GWNEEVQTCDYVENIPRC 1530

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

FB|FBgn0036203 Muc68D "Mucin 68D" [Drosophila melanogaster (taxid:7227)]

 Score = 157 (60.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
 Identities = 56/204 (27%), Positives = 82/204 (40%)

Query:    33 NGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEPEGMTL 92
             NG F   D + CN +Y C+ G +    CP  LHFD     C +P          PE +T 
Sbjct:  1319 NGIFLR-DFQSCNKYYVCLNGKAIAGHCPRNLHFDIKRKVCNFPSLVDCPLDEAPENVTK 1377

Query:    93 KDGFTCPKEQKASSSGQSVAHPVYAH-PTDCQKFYVCLNG-VTPREQGCQVGEVYNEESQ 150
             K     P + +++   +S+ +  Y   P  C +FYVC NG   PR+  C  G  ++ +S 
Sbjct:  1378 K-----PSDTESTPDCKSLRNGAYVRDPKSCSRFYVCANGRAIPRQ--CPQGLHFDIKSN 1430

Query:   151 KCDAPENVPGCENWFXXXXXXXXXXXXXXXXXIRRRRNAAFKCPQKNGQYEDPVQCDKYY 210
              C+ P  V  C                      + + +  F      G   D  Q +KYY
Sbjct:  1431 FCNYPILVQ-CSLEESQADAHGALLAEGVPDCTKVKEDTRF------G---DVKQHNKYY 1480

Query:   211 ECFDGQATEKLCPDGLVFDPLNRK 234
              C  G+A    C  G  FD  ++K
Sbjct:  1481 VCLKGKAVLHYCSPGNWFDLRSQK 1504

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

FB|FBgn0036361 CG10154 [Drosophila melanogaster (taxid:7227)]

 Score = 132 (51.5 bits), Expect = 6.1e-08, Sum P(2) = 6.1e-08
 Identities = 38/121 (31%), Positives = 49/121 (40%)

Query:   122 CQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGCENWFXXXXXXXXXXXXXXXX 181
             C K+YVC NG  P EQ C  G  YN   + CD  +NV  C                    
Sbjct:   204 CSKYYVCSNG-RPWEQQCAPGLAYNPSCKCCDFAKNV-NC-----TIDAVARNILPYSRT 256

Query:   182 XIRRRRNAAFKCPQKNGQY-EDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQ 240
              +RR   A  KCP     +     + D YY C +G+     C  GL +DP   K+  C +
Sbjct:   257 PLRR---ADIKCPLMGTHFFPHKSRRDAYYYCVEGRGVTLDCTPGLYYDP---KVEDCRR 310

Query:   241 P 241
             P
Sbjct:   311 P 311

GO:0016490 "structural constituent of peritrophic membrane" evidence=ISS

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

FB|FBgn0250907 Cht3 "Chitinase 3" [Drosophila melanogaster (taxid:7227)]

 Score = 150 (57.9 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 65/247 (26%), Positives = 94/247 (38%)

Query:    35 YFAHPDEKVCNIFYNCI-EGDSTEIICPTGLHFDEYTGTCVWPESAG-------RIGCGE 86
             +FA  D   CN +Y+C   G+  +  CP+GLH++     C WP SA         +    
Sbjct:   697 FFA--DSNNCNAYYHCFFAGELQQQFCPSGLHWNNEAKGCDWPSSAQCSLKLDQHLSTSY 754

Query:    87 PEGM-TLKDGFTCPKEQKASSS-------GQSVAHPVYAHPT-------------DCQKF 125
             P  + T K   T  K  K  S          + + P Y  PT             +C+K+
Sbjct:   755 PNPIQTSKKPETTLKPNKKPSEISTHHQVNSTSSRPQYMRPTILECTEGDYYPHRNCRKY 814

Query:   126 YVCLN-GVTPREQGCQVGEVYNEESQK-CDAPENVPGCENWFXXXXXXXXXXXXXXXXXI 183
             Y+C+N  + P E G   G+++ +  +K CD PENV  C                      
Sbjct:   815 YICVNKALVPSECG---GDLHWDGIKKLCDWPENVQ-CVTSKKYLKIIKSSSA------- 863

Query:   184 RRRRNAAFKCP-QKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPF 242
                 N    C  +K   Y  P  C KY  C   +     CP GL +   N +I  CD P 
Sbjct:   864 ----NEEDPCKGEKRVPY--PGNCSKYLFCLWNRLQASDCPPGLHY---NERIGNCDWPA 914

Query:   243 NVECGDR 249
               +C  +
Sbjct:   915 AAKCNPK 921

GO:0006036 "cuticle chitin catabolic process" evidence=ISS

GO:0004568 "chitinase activity" evidence=ISS;NAS

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	255
pfam01607	53	pfam01607, CBM_14, Chitin binding Peritrophin-A do	1e-10
pfam01607	53	pfam01607, CBM_14, Chitin binding Peritrophin-A do	6e-09
pfam01607	53	pfam01607, CBM_14, Chitin binding Peritrophin-A do	1e-08
smart00494	49	smart00494, ChtBD2, Chitin-binding domain type 2	5e-08
smart00494	49	smart00494, ChtBD2, Chitin-binding domain type 2	5e-08
smart00494	49	smart00494, ChtBD2, Chitin-binding domain type 2	7e-08

>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 116 YAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAPENVPGC 161
           Y  P DC K+Y C NG       C  G V++     CD P+NV  C
Sbjct: 9   YPDPGDCSKYYQCSNGK-AVVFTCPAGLVFDPALGTCDYPDNVVDC 53

This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains. Length = 53

>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain

 Score = 50.5 bits (121), Expect = 6e-09
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 31 RRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESA 79
          R +G +  P +  C+ +Y C  G +    CP GL FD   GTC +P++ 
Sbjct: 4  RPDGLYPDPGD--CSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNV 50

This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains. Length = 53

>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 195 QKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNV 244
           + +G Y DP  C KYY+C +G+A    CP GLVFDP    +  CD P NV
Sbjct: 4   RPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDP---ALGTCDYPDNV 50

This domain is called the Peritrophin-A domain and is found in chitin binding proteins particularly peritrophic matrix proteins of insects and animal chitinases. Copies of the domain are also found in some baculoviruses. Relevant references that describe proteins with this domain include. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains. Length = 53

>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 191 FKCPQK-NGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQP 241
            +CP + +G Y  P  C KYY+C +G+     CP GLVF+P       CD P
Sbjct: 1   NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNP---ATQTCDWP 49

Length = 49

>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2

 Score = 48.2 bits (115), Expect = 5e-08
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 109 QSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDAP 155
                 +Y HPTDC K+Y C NG  P    C  G V+N  +Q CD P
Sbjct: 4   PGRGDGLYPHPTDCSKYYQCSNG-RPIVGSCPAGLVFNPATQTCDWP 49

Length = 49

>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 30 PRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWP 76
           R +G + HP +  C+ +Y C  G      CP GL F+  T TC WP
Sbjct: 5  GRGDGLYPHPTD--CSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PF01607	53	CBM_14: Chitin binding Peritrophin-A domain; Inter	99.21
PF01607	53	CBM_14: Chitin binding Peritrophin-A domain; Inter	99.16
smart00494	56	ChtBD2 Chitin-binding domain type 2.	99.12
smart00494	56	ChtBD2 Chitin-binding domain type 2.	99.06
PF03427	61	CBM_19: Carbohydrate binding domain (family 19); I	87.76
PF03427	61	CBM_19: Carbohydrate binding domain (family 19); I	81.18

>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []

Probab=99.21  E-value=5.4e-12  Score=80.95  Aligned_cols=48  Identities=50%  Similarity=1.125  Sum_probs=37.2

Q ss_pred             CCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCc-ccC
Q psy2017         196 KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFN-VEC  246 (255)
Q Consensus       196 ~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~-v~C  246 (255)
                      .+|+++++.+|++||+|.+|.++++.||.|++||+.   +++|+++.+ +.|
T Consensus         5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~---~~~C~~~~~~~~C   53 (53)
T PF01607_consen    5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPS---SQRCVPPSNVVQC   53 (53)
T ss_dssp             SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TT---TSSEE-TTT-TT-
T ss_pred             CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcC---cCEEcCCccCCCC
Confidence            478999999999999999999999999999999996   799999999 666

It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.

>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []

Probab=99.16  E-value=2.2e-11  Score=78.03  Aligned_cols=48  Identities=38%  Similarity=0.996  Sum_probs=36.1

Q ss_pred             CCC-CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCc
Q psy2017          29 CPR-RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPES   78 (255)
Q Consensus        29 C~~-~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~   78 (255)
                      |.. .+|+|  +++.+|++||+|.+|.++++.||.|++||+.++.|+++..
T Consensus         1 C~~~~~~~~--~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~   49 (53)
T PF01607_consen    1 CPGRGDGFY--PHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSN   49 (53)
T ss_dssp             ----SSEEE----SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT
T ss_pred             CCccCCeeE--eCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCcc
Confidence            443 57888  6689999999999999999999999999999999999988

It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.

>smart00494 ChtBD2 Chitin-binding domain type 2

Probab=99.12  E-value=1e-10  Score=75.61  Aligned_cols=53  Identities=49%  Similarity=1.130  Sum_probs=47.7

Q ss_pred             ccCC-CCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCcccCC
Q psy2017         192 KCPQ-KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECG  247 (255)
Q Consensus       192 ~C~~-~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~v~C~  247 (255)
                      .|.. ..|+|+++.+|++||+|.+|.++.+.||.|++||..   ++.|+++..+.|.
T Consensus         2 ~C~~~~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~---~~~C~~~~~~~C~   55 (56)
T smart00494        2 ECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPA---TQTCDWPDNVGCG   55 (56)
T ss_pred             cCCCCCCccccCcccCCeeEEcCCCcEEeccCcCCCeECCC---CCCcCCcccCCCC
Confidence            3544 478999999999999999999999999999999996   6999999999886

>smart00494 ChtBD2 Chitin-binding domain type 2

Probab=99.06  E-value=3.4e-10  Score=73.13  Aligned_cols=51  Identities=39%  Similarity=0.962  Sum_probs=45.5

Q ss_pred             CCCC-CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCccC
Q psy2017          28 LCPR-RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG   80 (255)
Q Consensus        28 ~C~~-~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~~~   80 (255)
                      .|.. .+|+|  +++.+|++|++|.++.++.+.||.|++||..++.|+++..+.
T Consensus         2 ~C~~~~~g~~--~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~   53 (56)
T smart00494        2 ECPGRGDGLY--PHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVG   53 (56)
T ss_pred             cCCCCCCccc--cCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCC
Confidence            5764 56888  778899999999999999999999999999999999998764

>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=87.76  E-value=0.49  Score=30.74  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=19.4

Q ss_pred             cccEEccCCeeEeccCCCCCc
Q psy2017         207 DKYYECFDGQATEKLCPDGLV  227 (255)
Q Consensus       207 ~~y~~C~~g~~~~~~Cp~G~~  227 (255)
                      .+|-+|.+|+++.+.||+|++
T Consensus        35 G~faiC~~G~Wv~~~C~~Gt~   55 (61)
T PF03427_consen   35 GSFAICDHGTWVITPCPAGTT   55 (61)
T ss_pred             CCEEEcCCCcEEEeeCCCCCE
Confidence            479999999999999999986

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process

>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity

Probab=81.18  E-value=1.9  Score=28.09  Aligned_cols=36  Identities=25%  Similarity=0.554  Sum_probs=26.2

Q ss_pred             CCCCCCCCCCCcccCCCCcCC---CccEEcCCCceEEeeCCCCCee
Q psy2017          24 QGSYLCPRRNGYFAHPDEKVC---NIFYNCIEGDSTEIICPTGLHF   66 (255)
Q Consensus        24 ~~~~~C~~~~G~~~~p~p~~C---~~y~~C~~g~~~~~~Cp~g~~F   66 (255)
                      .....|.. +|.|      -|   .+|-+|.+|.++...||+|++-
T Consensus        18 ~~g~sc~t-~G~~------aCt~~G~faiC~~G~Wv~~~C~~Gt~C   56 (61)
T PF03427_consen   18 YNGQSCST-DGEY------ACTSDGSFAICDHGTWVITPCPAGTTC   56 (61)
T ss_pred             cCCCccCC-CCce------eEcCCCCEEEcCCCcEEEeeCCCCCEE
Confidence            33445542 4666      26   3599999999999999999863

A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
1dqc_A	74	Tachycitin; disulfide-rich, antimicrobial protein;	8e-12
1dqc_A	74	Tachycitin; disulfide-rich, antimicrobial protein;	1e-10
1dqc_A	74	Tachycitin; disulfide-rich, antimicrobial protein;	2e-09
1wb0_A	445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	6e-08
1wb0_A	445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	2e-07
1wb0_A	445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	2e-06

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 190 AFKCPQ-----KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNV 244
           AF+C +      +G   +   C  +Y C    A  + CP GL ++     +  CD P   
Sbjct: 3   AFRCGRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNA---YLKVCDWPSKA 59

Query: 245 ECGDR 249
            C   
Sbjct: 60  GCTSV 64

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 25 GSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
          G Y     +G   +     C  FYNC +  +    CP GLH++ Y   C WP  AG
Sbjct: 7  GRYSPCLDDGPNVNLYS--CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG 60

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1 Length = 74

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 95  GFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDA 154
            F C +       G         +   C  FY C   +  R + C  G  YN   + CD 
Sbjct: 3   AFRCGRYSPCLDDG------PNVNLYSCCSFYNCHKCL-ARLENCPKGLHYNAYLKVCDW 55

Query: 155 PENVPGCEN 163
           P    GC +
Sbjct: 56  PSKA-GCTS 63

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445

 Score = 51.6 bits (124), Expect = 6e-08
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 4/71 (5%)

Query: 169 PAAAPQAAKKPGKKIRRRRNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVF 228
               P    +P       ++   +    +G Y +P +   +Y C  G+  ++ CP GLVF
Sbjct: 377 EVPKPGQPSEPEHGPSPGQDTFCQGKA-DGLYPNPRERSSFYSCAAGRLFQQSCPTGLVF 435

Query: 229 DPLNRKINKCD 239
                    C 
Sbjct: 436 SN---SCKCCT 443

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 20  PEPPQGSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVW 75
           P P Q ++   + +G + +P E   + FY+C  G   +  CPTGL F      C W
Sbjct: 391 PSPGQDTFCQGKADGLYPNPRE--RSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A* Length = 445

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 97  TCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCD 153
                    +  Q  A  +Y +P +   FY C  G    +Q C  G V++   + C 
Sbjct: 388 EHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAG-RLFQQSCPTGLVFSNSCKCCT 443

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
1dqc_A	74	Tachycitin; disulfide-rich, antimicrobial protein;	99.47
1dqc_A	74	Tachycitin; disulfide-rich, antimicrobial protein;	99.39
1wb0_A	445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	98.68
1wb0_A	445	Chitinase 1, chitotriosidase 1; cyclopentapeptide	98.59

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1

Probab=99.47  E-value=1.6e-14  Score=98.49  Aligned_cols=58  Identities=24%  Similarity=0.576  Sum_probs=52.6

Q ss_pred             CcccCCCCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCcccCCCccc
Q psy2017         190 AFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLE  251 (255)
Q Consensus       190 ~~~C~~~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~v~C~~~~~  251 (255)
                      .+.|+. +|+|+|+.+|++||+|.+|.++++.||.|++||+.   ++.|||+++|.|..+..
T Consensus         9 ~~~C~~-~G~~~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~---~~~Cd~p~~v~C~~~~~   66 (74)
T 1dqc_A            9 YSPCLD-DGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY---LKVCDWPSKAGCTSVNK   66 (74)
T ss_dssp             GCCSSS-SEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT---TTEEECTTTTTCCSSCC
T ss_pred             CCcCCC-CCEeCCcccCcceeECCCCcEEEeECcCCCEEChh---hCcCcCcccCCCCCCCC
Confidence            357884 89999999999999999999999999999999996   79999999999987653

>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus tridentatus} SCOP: g.31.1.1

Probab=99.39  E-value=3.8e-13  Score=91.66  Aligned_cols=56  Identities=34%  Similarity=0.717  Sum_probs=50.8

Q ss_pred             CCCCCCCCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCccCCCCCCCC
Q psy2017          26 SYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEP   87 (255)
Q Consensus        26 ~~~C~~~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~~~~~~C~~~   87 (255)
                      .+.|+. +|+|  +||.+|++||+|.+|.++++.||.||+||+.++.|+|+.+|.   |...
T Consensus         9 ~~~C~~-~G~~--~~p~dC~~fy~C~~G~~~~~~Cp~Gl~Fn~~~~~Cd~p~~v~---C~~~   64 (74)
T 1dqc_A            9 YSPCLD-DGPN--VNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG---CTSV   64 (74)
T ss_dssp             GCCSSS-SEEE--CCSSCSSEEEEEETTEEEEEECTTSCEEETTTTEEECTTTTT---CCSS
T ss_pred             CCcCCC-CCEe--CCcccCcceeECCCCcEEEeECcCCCEEChhhCcCcCcccCC---CCCC
Confidence            467875 7999  788999999999999999999999999999999999999985   8754

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*

Probab=98.68  E-value=2.1e-09  Score=97.40  Aligned_cols=51  Identities=29%  Similarity=0.657  Sum_probs=0.0

Q ss_pred             CCCcccCCC-CCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCC
Q psy2017         188 NAAFKCPQK-NGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQP  241 (255)
Q Consensus       188 ~~~~~C~~~-~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~  241 (255)
                      ...+.|+.. +|+|+||.+|++||+|.+|..+++.||.|++||+.   ++.|+||
T Consensus       394 ~~~~~C~~~~~G~~~~p~~C~~fy~C~~g~~~~~~Cp~Gl~f~~~---~~~Cd~p  445 (445)
T 1wb0_A          394 GQDTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNS---CKCCTWN  445 (445)
T ss_dssp             -------------------------------------------------------
T ss_pred             CCCCcCCCCCCcccCCCCCCCcccCCCCCCEEeCCCcCCCEECcc---cCCCCCC
Confidence            345789974 89999999999999999999999999999999996   7999996

>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors, chitinase inhibitors, carbohyd metabolism, chitin degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A 1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*

Probab=98.59  E-value=5.4e-09  Score=94.75  Aligned_cols=50  Identities=30%  Similarity=0.773  Sum_probs=0.0

Q ss_pred             CCCCCCC-CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCC
Q psy2017          25 GSYLCPR-RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWP   76 (255)
Q Consensus        25 ~~~~C~~-~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~   76 (255)
                      ..+.|+. .+|+|  |||.+|++||+|.+|.++.+.||.|++||+..+.|+|+
T Consensus       395 ~~~~C~~~~~G~~--~~p~~C~~fy~C~~g~~~~~~Cp~Gl~f~~~~~~Cd~p  445 (445)
T 1wb0_A          395 QDTFCQGKADGLY--PNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN  445 (445)
T ss_dssp             -----------------------------------------------------
T ss_pred             CCCcCCCCCCccc--CCCCCCCcccCCCCCCEEeCCCcCCCEECcccCCCCCC
Confidence            3578986 48999  88899999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1dqca_	73	g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple	7e-11
d1dqca_	73	g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple	4e-08
d1dqca_	73	g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachyple	1e-07

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 54.6 bits (131), Expect = 7e-11
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 187 RNAAFKCPQKNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVEC 246
           R   +     +G   +   C  +Y C    A  + CP GL ++     +  CD P    C
Sbjct: 5   RCGRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNA---YLKVCDWPSKAGC 61

Query: 247 GDR 249
              
Sbjct: 62  TSV 64

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 47.3 bits (112), Expect = 4e-08
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 95  GFTCPKEQKASSSGQSVAHPVYAHPTDCQKFYVCLNGVTPREQGCQVGEVYNEESQKCDA 154
            F C +       G         +   C  FY C   +  R + C  G  YN   + CD 
Sbjct: 3   AFRCGRYSPCLDDG------PNVNLYSCCSFYNCHKCL-ARLENCPKGLHYNAYLKVCDW 55

Query: 155 PENVPGCEN 163
           P    GC +
Sbjct: 56  PSKA-GCTS 63

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Length = 73

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

 Score = 45.7 bits (108), Expect = 1e-07
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 25 GSYLCPRRNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAG 80
          G Y     +G   +     C  FYNC +  +    CP GLH++ Y   C WP  AG
Sbjct: 7  GRYSPCLDDGPNVNLYS--CCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1dqca_	73	Tachycitin {Horseshoe crab (Tachypleus tridentatus	99.46
d1dqca_	73	Tachycitin {Horseshoe crab (Tachypleus tridentatus	99.35
d1hx2a_	60	BSTI {Fire-bellied toad (Bombina bombina) [TaxId:	83.02

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=99.46  E-value=8.8e-15  Score=97.67  Aligned_cols=53  Identities=25%  Similarity=0.605  Sum_probs=49.9

Q ss_pred             CCCcccCCcCCcccEEccCCeeEeccCCCCCccCcCCCCCCCCCCCCcccCCCccc
Q psy2017         196 KNGQYEDPVQCDKYYECFDGQATEKLCPDGLVFDPLNRKINKCDQPFNVECGDRLE  251 (255)
Q Consensus       196 ~~g~~~~~~~C~~y~~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~~v~C~~~~~  251 (255)
                      .+|+++||.+|++||+|.+|+++++.||.||+||+.   ++.|+|+++|.|.++..
T Consensus        14 ~dG~~~~p~dC~~yy~C~~g~~~~~~Cp~Gl~Fn~~---~~~Cd~p~~v~C~~~~~   66 (73)
T d1dqca_          14 DDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAY---LKVCDWPSKAGCTSVNK   66 (73)
T ss_dssp             SSEEECCSSCSSEEEEEETTEEEEEECTTSCEEETT---TTEEECTTTTTCCSSCC
T ss_pred             CCCccCCcccccEEEEeECCEEEEEECCCCCEECCC---cCEECccccCCCCCCCc
Confidence            589999999999999999999999999999999996   79999999999998754

>d1dqca_ g.31.1.1 (A:) Tachycitin {Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: Small proteins
fold: Invertebrate chitin-binding proteins
superfamily: Invertebrate chitin-binding proteins
family: Tachycitin
domain: Tachycitin
species: Horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=99.35  E-value=3.6e-13  Score=89.69  Aligned_cols=51  Identities=35%  Similarity=0.767  Sum_probs=47.6

Q ss_pred             CCCcccCCCCcCCCccEEcCCCceEEeeCCCCCeeeCCCCcccCCCccCCCCCCCC
Q psy2017          32 RNGYFAHPDEKVCNIFYNCIEGDSTEIICPTGLHFDEYTGTCVWPESAGRIGCGEP   87 (255)
Q Consensus        32 ~~G~~~~p~p~~C~~y~~C~~g~~~~~~Cp~g~~Fd~~~~~C~~~~~~~~~~C~~~   87 (255)
                      .+|+|  ++|.||++||+|.+|.++.+.||.||+||+.++.|+|+.+|.   |...
T Consensus        14 ~dG~~--~~p~dC~~yy~C~~g~~~~~~Cp~Gl~Fn~~~~~Cd~p~~v~---C~~~   64 (73)
T d1dqca_          14 DDGPN--VNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAG---CTSV   64 (73)
T ss_dssp             SSEEE--CCSSCSSEEEEEETTEEEEEECTTSCEEETTTTEEECTTTTT---CCSS
T ss_pred             CCCcc--CCcccccEEEEeECCEEEEEECCCCCEECCCcCEECccccCC---CCCC
Confidence            47999  888999999999999999999999999999999999999995   8765

>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}

class: Small proteins
fold: Serine protease inhibitors
superfamily: Serine protease inhibitors
family: BSTI
domain: BSTI
species: Fire-bellied toad (Bombina bombina) [TaxId: 8345]

Probab=83.02  E-value=0.63  Score=27.80  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=17.9

Q ss_pred             EccCCeeEeccCCCCCccCcCCCCCCCCCCCC
Q psy2017         211 ECFDGQATEKLCPDGLVFDPLNRKINKCDQPF  242 (255)
Q Consensus       211 ~C~~g~~~~~~Cp~G~~Fd~~~~~~~~C~~~~  242 (255)
                      .|+.|-    .||.|+++|...  .++|+.+.
T Consensus        33 ~C~eGC----~Cp~G~vl~~~~--~~~CV~~~   58 (60)
T d1hx2a_          33 KCNQRC----GCISGTVLKSKD--SSECVHPS   58 (60)
T ss_dssp             CCCSEE----EECTTCEESSTT--CSSEECTT
T ss_pred             CCCccC----CCCCCEeEcCCC--CCeEechh
Confidence            355553    599999998642  36888765