Psyllid ID: psy2047

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR
ccccccHHHHcccHHHHHHcHHHHHHHHHHHHHcHHHHHccHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHHcHHHHHHHHHHHcccccccccccHHHHHHcccHHHHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHcccEEEEEEcccccccc
ccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHccHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHccccccccccccHHHHHHccHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHccccEEEEccccccccc
mdsdseddARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTelpkktalvikvpmipsqaEKYRGLMEDFkktanpegsnrsneiSHMSMFMMLRKMAnhplglryyfqENTLREIADClvedptykgtnpqyilediswlsdydihQLSLKhktldcakykvpddlvvesgklkkldeilpdlkknghrvLIFSQFIFVLDILGHYMdirgwrhlrldgatqvssr
mdsdseddaryedkrkeqatfeveqvdqakriispfmlrRLKKDVltelpkktalvikvpmipsqAEKYRGLMEDFKKtanpegsnrsnEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLdeilpdlkknghrVLIFSQFIFVLDILGHYMDIRGWRhlrldgatqvssr
MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR
***************************QAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIP********************************MFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD********
***DSED******************VDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLME*****************************ANHPLGLRYYFQE*********************QYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLR***AT*****
***************KEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKK********RSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLD********
*****EDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGA******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
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MDSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query233 2.2.26 [Sep-21-2011]
Q9VL72 844 SWI/SNF-related matrix-as yes N/A 0.909 0.251 0.442 1e-45
Q5FWR0 1003 SWI/SNF-related matrix-as yes N/A 0.905 0.210 0.377 2e-37
D3Z9Z9 1024 SWI/SNF-related matrix-as yes N/A 0.905 0.206 0.387 7e-37
Q04692 1021 SWI/SNF-related matrix-as yes N/A 0.905 0.206 0.387 8e-37
Q9H4L7 1026 SWI/SNF-related matrix-as yes N/A 0.905 0.205 0.382 1e-36
E1B7X9 1028 SWI/SNF-related matrix-as yes N/A 0.905 0.205 0.377 5e-36
E7F1C4 954 SWI/SNF-related matrix-as yes N/A 0.901 0.220 0.362 3e-34
G5EDG2 989 SWI/SNF-related matrix-as yes N/A 0.888 0.209 0.381 1e-33
O74842 1284 ATP-dependent helicase ff yes N/A 0.918 0.166 0.362 4e-33
B0R061 972 SWI/SNF-related matrix-as no N/A 0.879 0.210 0.342 9e-30
>sp|Q9VL72|SMRCD_DROME SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog OS=Drosophila melanogaster GN=Etl1 PE=1 SV=1 Back     alignment and function desciption
 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 96/217 (44%), Positives = 140/217 (64%), Gaps = 5/217 (2%)

Query: 17  EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76
           E + F+  Q+ +AKRI+ PF+LRRLKKDVL  LPKK +LV KVPM   Q   Y  L++ +
Sbjct: 496 EVSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYY 555

Query: 77  KKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTN 136
                   S  S+E + +++ M +R++ANHPL +R+YF +  LR  +  L    ++K TN
Sbjct: 556 SNNKGEVCS--SSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTN 613

Query: 137 PQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196
            QYI E+++ +SD+ ++Q+  KH+  D    K+PD+L+ +SGK   LD +LP LK  GHR
Sbjct: 614 EQYIFEELAVMSDFQVYQMMNKHEFYDV---KIPDNLICDSGKFLYLDTLLPKLKAEGHR 670

Query: 197 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
           VL+FSQF  +LDI+  Y+ IR +   RLDGAT V+ R
Sbjct: 671 VLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVR 707
DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 2
>sp|Q5FWR0|SMRCD_XENTR SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Xenopus tropicalis GN=smarcad1 PE=2 SV=1 Back     alignment and function description
>sp|D3Z9Z9|SMRCD_RAT SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Rattus norvegicus GN=Smarcad1 PE=3 SV=1 Back     alignment and function description
>sp|Q04692|SMRCD_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Mus musculus GN=Smarcad1 PE=1 SV=2 Back     alignment and function description
>sp|Q9H4L7|SMRCD_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Homo sapiens GN=SMARCAD1 PE=1 SV=2 Back     alignment and function description
>sp|E1B7X9|SMRCD_BOVIN SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 OS=Bos taurus GN=SMARCAD1 PE=3 SV=2 Back     alignment and function description
>sp|E7F1C4|SMRDB_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1B OS=Danio rerio GN=smarcad1b PE=3 SV=1 Back     alignment and function description
>sp|G5EDG2|SMRCD_CAEEL SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog OS=Caenorhabditis elegans GN=M03C11.8 PE=3 SV=1 Back     alignment and function description
>sp|O74842|FFT2_SCHPO ATP-dependent helicase fft2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fft2 PE=1 SV=1 Back     alignment and function description
>sp|B0R061|SMRDA_DANRE SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A OS=Danio rerio GN=smarcad1a PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
350402509 831 PREDICTED: SWI/SNF-related matrix-associ 0.914 0.256 0.5 7e-54
340711976 831 PREDICTED: LOW QUALITY PROTEIN: SWI/SNF- 0.914 0.256 0.5 1e-53
242010568 853 conserved hypothetical protein [Pediculu 0.905 0.247 0.523 5e-52
91089209 871 PREDICTED: similar to helicase [Triboliu 0.888 0.237 0.483 1e-51
157116391 814 helicase [Aedes aegypti] gi|108876505|gb 0.944 0.270 0.486 1e-51
170033270 881 chromo domain protein 1 [Culex quinquefa 0.927 0.245 0.486 3e-51
110755099 830 PREDICTED: SWI/SNF-related matrix-associ 0.914 0.256 0.477 8e-51
380030205 830 PREDICTED: SWI/SNF-related matrix-associ 0.914 0.256 0.472 1e-50
380030207 851 PREDICTED: SWI/SNF-related matrix-associ 0.914 0.250 0.472 1e-50
193671687 848 PREDICTED: SWI/SNF-related matrix-associ 0.896 0.246 0.490 3e-50
>gi|350402509|ref|XP_003486511.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  216 bits (550), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 110/220 (50%), Positives = 152/220 (69%), Gaps = 7/220 (3%)

Query: 14  KRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLM 73
           K  EQ  FE EQV  AK+I+ PF+LRRLK +VL +LP+KT  VIK PMI  Q + Y  L+
Sbjct: 472 KNSEQPLFEQEQVKNAKQIMRPFVLRRLKAEVLRDLPEKTERVIKCPMIEKQRKMYTNLV 531

Query: 74  EDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYK 133
            +F   A+     +S E++ + M M LRK+ANHPL +R Y+ E+ L+ I++ L ++ +YK
Sbjct: 532 AEFSAEAD-----QSTEVNGIGMMMQLRKLANHPLLVRDYYNESKLKVISNRLAKEHSYK 586

Query: 134 GTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKN 193
             NP Y+ ED+ W+SDY I+QL+  +K+L  A   +P +L+ E+GKLK LDE+LP LK+ 
Sbjct: 587 QKNPDYVFEDLQWMSDYQINQLTRTYKSL--AGLGLPQELISEAGKLKILDELLPKLKEE 644

Query: 194 GHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
           GHRVLIFSQF  +LDIL  Y+ IRG  +LRLDG+T V+ R
Sbjct: 645 GHRVLIFSQFTMILDILEEYLTIRGRTYLRLDGSTPVTDR 684

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|340711976|ref|XP_003394541.1| PREDICTED: LOW QUALITY PROTEIN: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|242010568|ref|XP_002426037.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510047|gb|EEB13299.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|91089209|ref|XP_967093.1| PREDICTED: similar to helicase [Tribolium castaneum] gi|270012470|gb|EFA08918.1| hypothetical protein TcasGA2_TC006624 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157116391|ref|XP_001658454.1| helicase [Aedes aegypti] gi|108876505|gb|EAT40730.1| AAEL007558-PA, partial [Aedes aegypti] Back     alignment and taxonomy information
>gi|170033270|ref|XP_001844501.1| chromo domain protein 1 [Culex quinquefasciatus] gi|167873908|gb|EDS37291.1| chromo domain protein 1 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|110755099|ref|XP_396302.3| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380030205|ref|XP_003698744.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|380030207|ref|XP_003698745.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|193671687|ref|XP_001946103.1| PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query233
FB|FBgn0032157 844 Etl1 "Etl1 homologue" [Drosoph 0.909 0.251 0.442 2.5e-43
UNIPROTKB|Q5FWR0 1003 smarcad1 "SWI/SNF-related matr 0.965 0.224 0.371 2.6e-36
UNIPROTKB|F1NAD2 963 SMARCAD1 "Uncharacterized prot 0.957 0.231 0.372 3e-36
UNIPROTKB|E2RG62 1026 SMARCAD1 "Uncharacterized prot 0.965 0.219 0.380 1.5e-35
UNIPROTKB|J9NX47 1026 SMARCAD1 "Uncharacterized prot 0.965 0.219 0.380 1.5e-35
UNIPROTKB|J9PA79 1026 SMARCAD1 "Uncharacterized prot 0.965 0.219 0.380 1.5e-35
UNIPROTKB|F1RWW3 1029 SMARCAD1 "Uncharacterized prot 0.965 0.218 0.376 1.9e-35
MGI|MGI:95453 1021 Smarcad1 "SWI/SNF-related, mat 0.965 0.220 0.380 2.4e-35
RGD|1309640 1024 Smarcad1 "SWI/SNF-related, mat 0.965 0.219 0.380 2.5e-35
UNIPROTKB|Q9H4L7 1026 SMARCAD1 "SWI/SNF-related matr 0.965 0.219 0.376 2.5e-35
FB|FBgn0032157 Etl1 "Etl1 homologue" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 452 (164.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 96/217 (44%), Positives = 140/217 (64%)

Query:    17 EQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDF 76
             E + F+  Q+ +AKRI+ PF+LRRLKKDVL  LPKK +LV KVPM   Q   Y  L++ +
Sbjct:   496 EVSQFQETQIQRAKRIMKPFVLRRLKKDVLKNLPKKLSLVEKVPMSSQQKIYYHELVDYY 555

Query:    77 KKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTN 136
                     S  S+E + +++ M +R++ANHPL +R+YF +  LR  +  L    ++K TN
Sbjct:   556 SNNKGEVCS--SSERAGIAIMMEMRRIANHPLLMRHYFTDANLRGFSKRLANASSFKKTN 613

Query:   137 PQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHR 196
              QYI E+++ +SD+ ++Q+  KH+  D    K+PD+L+ +SGK   LD +LP LK  GHR
Sbjct:   614 EQYIFEELAVMSDFQVYQMMNKHEFYDV---KIPDNLICDSGKFLYLDTLLPKLKAEGHR 670

Query:   197 VLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
             VL+FSQF  +LDI+  Y+ IR +   RLDGAT V+ R
Sbjct:   671 VLLFSQFTMMLDIVEEYLRIRKFGFCRLDGATAVNVR 707
GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS
GO:0003677 "DNA binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
UNIPROTKB|Q5FWR0 smarcad1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|F1NAD2 SMARCAD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RG62 SMARCAD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NX47 SMARCAD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9PA79 SMARCAD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1RWW3 SMARCAD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:95453 Smarcad1 "SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309640 Smarcad1 "SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1`" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H4L7 SMARCAD1 "SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
PLN03142 1033 PLN03142, PLN03142, Probable chromatin-remodeling 1e-21
COG0553 866 COG0553, HepA, Superfamily II DNA/RNA helicases, S 2e-18
pfam00176301 pfam00176, SNF2_N, SNF2 family N-terminal domain 1e-12
cd00079131 cd00079, HELICc, Helicase superfamily c-terminal d 0.002
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information 
 Score = 92.9 bits (231), Expect = 1e-21
 Identities = 66/207 (31%), Positives = 91/207 (43%), Gaps = 52/207 (25%)

Query: 22  EVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTAN 81
           + E V Q  +++ PF+LRRLK DV   LP K   ++KV M   Q + Y+ L++      N
Sbjct: 367 QQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVN 426

Query: 82  PEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYIL 141
             G  R      +++ M LRK  NHP    Y FQ                  G  P    
Sbjct: 427 -AGGERKR---LLNIAMQLRKCCNHP----YLFQ------------------GAEPG--- 457

Query: 142 EDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKKNGHRVLIFS 201
                                    Y   + LV  SGK+  LD++LP LK+   RVLIFS
Sbjct: 458 -----------------------PPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFS 494

Query: 202 QFIFVLDILGHYMDIRGWRHLRLDGAT 228
           Q   +LDIL  Y+  RG+++ R+DG T
Sbjct: 495 QMTRLLDILEDYLMYRGYQYCRIDGNT 521

Length = 1033
>gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215770 pfam00176, SNF2_N, SNF2 family N-terminal domain Back     alignment and domain information
>gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 233
KOG0389|consensus 941 100.0
KOG0385|consensus 971 100.0
KOG0387|consensus 923 99.97
KOG0384|consensus 1373 99.97
PLN03142 1033 Probable chromatin-remodeling complex ATPase chain 99.96
KOG0392|consensus 1549 99.96
KOG1015|consensus 1567 99.96
KOG0386|consensus 1157 99.95
KOG0391|consensus 1958 99.95
KOG0388|consensus 1185 99.94
KOG1002|consensus 791 99.91
KOG0383|consensus696 99.88
KOG4439|consensus 901 99.88
KOG0390|consensus 776 99.88
COG0553 866 HepA Superfamily II DNA/RNA helicases, SNF2 family 99.87
KOG1016|consensus 1387 99.83
KOG1001|consensus674 99.7
PF00176299 SNF2_N: SNF2 family N-terminal domain; InterPro: I 99.53
KOG1000|consensus 689 99.49
PF11496 297 HDA2-3: Class II histone deacetylase complex subun 99.29
PRK04914 956 ATP-dependent helicase HepA; Validated 98.88
PRK13766 773 Hef nuclease; Provisional 97.6
TIGR00603 732 rad25 DNA repair helicase rad25. All proteins in t 97.11
KOG0331|consensus 519 96.93
cd00079131 HELICc Helicase superfamily c-terminal domain; ass 96.92
COG1061 442 SSL2 DNA or RNA helicases of superfamily II [Trans 96.62
COG1111 542 MPH1 ERCC4-like helicases [DNA replication, recomb 96.58
KOG0333|consensus 673 96.38
PTZ00110 545 helicase; Provisional 96.37
TIGR03714 762 secA2 accessory Sec system translocase SecA2. Memb 95.78
PHA02558 501 uvsW UvsW helicase; Provisional 95.65
PRK12898 656 secA preprotein translocase subunit SecA; Reviewed 95.56
PRK09200 790 preprotein translocase subunit SecA; Reviewed 95.28
COG0513 513 SrmB Superfamily II DNA and RNA helicases [DNA rep 95.17
PRK05298 652 excinuclease ABC subunit B; Provisional 95.09
PRK04837 423 ATP-dependent RNA helicase RhlB; Provisional 95.0
KOG0330|consensus 476 94.99
TIGR00631 655 uvrb excinuclease ABC, B subunit. This family is b 94.88
PRK13104 896 secA preprotein translocase subunit SecA; Reviewed 94.85
KOG0298|consensus 1394 94.82
PRK13107 908 preprotein translocase subunit SecA; Reviewed 94.67
PRK01297 475 ATP-dependent RNA helicase RhlB; Provisional 94.44
PRK04537 572 ATP-dependent RNA helicase RhlB; Provisional 94.26
PRK11192 434 ATP-dependent RNA helicase SrmB; Provisional 94.25
PRK12906 796 secA preprotein translocase subunit SecA; Reviewed 94.19
KOG0334|consensus 997 93.81
PRK11776 460 ATP-dependent RNA helicase DbpA; Provisional 93.79
PRK12904 830 preprotein translocase subunit SecA; Reviewed 93.59
TIGR00963 745 secA preprotein translocase, SecA subunit. The pro 93.44
PRK12900 1025 secA preprotein translocase subunit SecA; Reviewed 93.38
KOG0339|consensus 731 92.77
KOG0298|consensus 1394 92.75
KOG0328|consensus400 92.44
PLN00206 518 DEAD-box ATP-dependent RNA helicase; Provisional 92.04
KOG0342|consensus 543 91.72
PRK10590 456 ATP-dependent RNA helicase RhlE; Provisional 91.67
TIGR01587358 cas3_core CRISPR-associated helicase Cas3. This mo 91.13
KOG0341|consensus 610 90.85
PRK11634 629 ATP-dependent RNA helicase DeaD; Provisional 90.82
TIGR01389 591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 90.38
TIGR03158357 cas3_cyano CRISPR-associated helicase, Cyano-type. 90.26
TIGR00614 470 recQ_fam ATP-dependent DNA helicase, RecQ family. 89.83
PRK11057 607 ATP-dependent DNA helicase RecQ; Provisional 89.81
PTZ00424401 helicase 45; Provisional 88.64
TIGR02621 844 cas3_GSU0051 CRISPR-associated helicase Cas3, Anae 88.62
KOG0335|consensus 482 88.23
KOG0343|consensus 758 83.88
KOG0340|consensus 442 83.2
KOG0326|consensus459 82.17
KOG0332|consensus 477 80.92
>KOG0389|consensus Back     alignment and domain information 
Probab=100.00  E-value=7.8e-39  Score=277.75  Aligned_cols=210  Identities=42%  Similarity=0.699  Sum_probs=192.3

Q ss_pred             hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHH
Q psy2047          20 TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMM   99 (233)
Q Consensus        20 ~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~   99 (233)
                      ....+++.+-+.+++||+|||.|.+++.+||||+.++.+|+|++.|+.+|..+.+......+....++....  -.++++
T Consensus       607 ~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~--~~vlmq  684 (941)
T KOG0389|consen  607 LLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS--GNVLMQ  684 (941)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc--chHHHH
Confidence            344668999999999999999999999999999999999999999999999999988655543333322222  568999


Q ss_pred             HHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhcccc
Q psy2047         100 LRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGK  179 (233)
Q Consensus       100 Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K  179 (233)
                      ||+++|||.|+...+..+.+..++..+..++++...+.+.++||...++|++++++|..++++.  .+..+...|..|||
T Consensus       685 lRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~--~f~L~d~~~mdSgK  762 (941)
T KOG0389|consen  685 LRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLS--KFQLKDDLWMDSGK  762 (941)
T ss_pred             HHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCc--ccccCCchhhhhhh
Confidence            9999999999999999999999999999999999999999999999999999999999999777  88899999999999


Q ss_pred             HHHHHHHHhHHHhCCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047         180 LKKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR  233 (233)
Q Consensus       180 l~~l~~lL~~~~~~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R  233 (233)
                      +..|..+|.++.++|+|||||||||.||||||..|.-.|+.|+||||+|++..|
T Consensus       763 ~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~R  816 (941)
T KOG0389|consen  763 CRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDR  816 (941)
T ss_pred             HhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHH
Confidence            999999999999999999999999999999999999999999999999999876

>KOG0385|consensus Back     alignment and domain information
>KOG0387|consensus Back     alignment and domain information
>KOG0384|consensus Back     alignment and domain information
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional Back     alignment and domain information
>KOG0392|consensus Back     alignment and domain information
>KOG1015|consensus Back     alignment and domain information
>KOG0386|consensus Back     alignment and domain information
>KOG0391|consensus Back     alignment and domain information
>KOG0388|consensus Back     alignment and domain information
>KOG1002|consensus Back     alignment and domain information
>KOG0383|consensus Back     alignment and domain information
>KOG4439|consensus Back     alignment and domain information
>KOG0390|consensus Back     alignment and domain information
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1016|consensus Back     alignment and domain information
>KOG1001|consensus Back     alignment and domain information
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e Back     alignment and domain information
>KOG1000|consensus Back     alignment and domain information
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi Back     alignment and domain information
>PRK04914 ATP-dependent helicase HepA; Validated Back     alignment and domain information
>PRK13766 Hef nuclease; Provisional Back     alignment and domain information
>TIGR00603 rad25 DNA repair helicase rad25 Back     alignment and domain information
>KOG0331|consensus Back     alignment and domain information
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process Back     alignment and domain information
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0333|consensus Back     alignment and domain information
>PTZ00110 helicase; Provisional Back     alignment and domain information
>TIGR03714 secA2 accessory Sec system translocase SecA2 Back     alignment and domain information
>PHA02558 uvsW UvsW helicase; Provisional Back     alignment and domain information
>PRK12898 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK09200 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK05298 excinuclease ABC subunit B; Provisional Back     alignment and domain information
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>KOG0330|consensus Back     alignment and domain information
>TIGR00631 uvrb excinuclease ABC, B subunit Back     alignment and domain information
>PRK13104 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>PRK13107 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional Back     alignment and domain information
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional Back     alignment and domain information
>PRK12906 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0334|consensus Back     alignment and domain information
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional Back     alignment and domain information
>PRK12904 preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>TIGR00963 secA preprotein translocase, SecA subunit Back     alignment and domain information
>PRK12900 secA preprotein translocase subunit SecA; Reviewed Back     alignment and domain information
>KOG0339|consensus Back     alignment and domain information
>KOG0298|consensus Back     alignment and domain information
>KOG0328|consensus Back     alignment and domain information
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional Back     alignment and domain information
>KOG0342|consensus Back     alignment and domain information
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional Back     alignment and domain information
>TIGR01587 cas3_core CRISPR-associated helicase Cas3 Back     alignment and domain information
>KOG0341|consensus Back     alignment and domain information
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type Back     alignment and domain information
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PTZ00424 helicase 45; Provisional Back     alignment and domain information
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype Back     alignment and domain information
>KOG0335|consensus Back     alignment and domain information
>KOG0343|consensus Back     alignment and domain information
>KOG0340|consensus Back     alignment and domain information
>KOG0326|consensus Back     alignment and domain information
>KOG0332|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3mwy_W 800 Crystal Structure Of The Chromodomain-atpase Portio 7e-20
1z63_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COM 2e-05
1z6a_A500 Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN 6e-05
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of The Yeast Chd1 Chromatin Remodeler Length = 800 Back     alignment and structure 
Iteration: 1

 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 105/233 (45%), Gaps = 52/233 (22%)
Query: 4   DSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIP 63
           D E D   +D+ +E      E +    R I PF+LRRLKKDV   LP KT  +++V +  
Sbjct: 428 DQEIDFENQDEEQE------EYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSD 481
Query: 64  SQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYF---QENTLR 120
            Q E Y+ ++   K  +      +    S +++   L+K +NHP    Y F   +E  L+
Sbjct: 482 VQTEYYKNILT--KNYSALTAGAKGGHFSLLNIMNELKKASNHP----YLFDNAEERVLQ 535
Query: 121 EIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKL 180
           +  D                                         +  V   L++ SGK+
Sbjct: 536 KFGDG-------------------------------------KMTRENVLRGLIMSSGKM 558
Query: 181 KKLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
             LD++L  LKK+GHRVLIFSQ + +LDILG Y+ I+G    RLDG    + R
Sbjct: 559 VLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX With Dsdna Length = 500 Back     alignment and structure
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN Length = 500 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query233
3mwy_W 800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 1e-39
1z3i_X 644 Similar to RAD54-like; recombination ATPase helica 2e-35
1z63_A 500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 9e-27
1z5z_A 271 Helicase of the SNF2/RAD54 family; hydrolase, reco 6e-26
3hgt_A 328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 8e-19
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Length = 800 Back     alignment and structure
 Score =  143 bits (363), Expect = 1e-39
 Identities = 68/232 (29%), Positives = 102/232 (43%), Gaps = 46/232 (19%)

Query: 2   DSDSEDDARYEDKRKEQATFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPM 61
             D E D   +D+ +E      E +    R I PF+LRRLKKDV   LP KT  +++V +
Sbjct: 426 TIDQEIDFENQDEEQE------EYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVEL 479

Query: 62  IPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLRE 121
              Q E Y+ ++   K  +      +    S +++   L+K +NHP    Y F       
Sbjct: 480 SDVQTEYYKNILT--KNYSALTAGAKGGHFSLLNIMNELKKASNHP----YLFDN----- 528

Query: 122 IADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLK 181
                 E+   +      +  +                             L++ SGK+ 
Sbjct: 529 -----AEERVLQKFGDGKMTRENVL------------------------RGLIMSSGKMV 559

Query: 182 KLDEILPDLKKNGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQVSSR 233
            LD++L  LKK+GHRVLIFSQ + +LDILG Y+ I+G    RLDG    + R
Sbjct: 560 LLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQR 611
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Length = 644 Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 Back     alignment and structure
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Length = 328 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
1z3i_X 644 Similar to RAD54-like; recombination ATPase helica 99.93
1z5z_A 271 Helicase of the SNF2/RAD54 family; hydrolase, reco 99.92
3mwy_W 800 Chromo domain-containing protein 1; SWI2/SNF2 ATPa 99.9
3hgt_A 328 HDA1 complex subunit 3; RECA-like domain, SWI2/SNF 99.9
1z63_A 500 Helicase of the SNF2/RAD54 hamily; protein-DNA com 99.85
3dmq_A 968 RNA polymerase-associated protein RAPA; SWF2/SNF2, 98.28
2jgn_A185 DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp 97.82
1wp9_A494 ATP-dependent RNA helicase, putative; ATPase, DNA 97.78
2fwr_A472 DNA repair protein RAD25; DNA unwinding, XPB, DNA 97.73
1t5i_A 172 C_terminal domain of A probable ATP-dependent RNA 97.69
2hjv_A163 ATP-dependent RNA helicase DBPA; parallel alpha-be 97.67
2rb4_A 175 ATP-dependent RNA helicase DDX25; rossmann fold, s 97.52
2p6n_A191 ATP-dependent RNA helicase DDX41; DEAD, structural 97.52
1fuk_A165 Eukaryotic initiation factor 4A; helicase, DEAD-bo 97.5
4a2p_A 556 RIG-I, retinoic acid inducible protein I; hydrolas 97.28
3eaq_A 212 Heat resistant RNA dependent ATPase; DEAD box RNA 97.26
2yjt_D 170 ATP-dependent RNA helicase SRMB, regulator of ribo 96.25
3tbk_A 555 RIG-I helicase domain; DECH helicase, ATP binding, 97.15
4a2w_A 936 RIG-I, retinoic acid inducible protein I; hydrolas 97.04
4a2q_A 797 RIG-I, retinoic acid inducible protein I; hydrolas 97.0
3i32_A 300 Heat resistant RNA dependent ATPase; RNA helicase, 96.86
1xti_A 391 Probable ATP-dependent RNA helicase P47; alpha-bet 96.06
2ykg_A 696 Probable ATP-dependent RNA helicase DDX58; hydrola 96.06
4gl2_A 699 Interferon-induced helicase C domain-containing P; 95.97
2i4i_A 417 ATP-dependent RNA helicase DDX3X; DEAD, structural 95.62
1hv8_A367 Putative ATP-dependent RNA helicase MJ0669; RNA-bi 95.56
1tf5_A 844 Preprotein translocase SECA subunit; ATPase, helic 95.47
1s2m_A 400 Putative ATP-dependent RNA helicase DHH1; ATP-bind 95.44
2db3_A434 ATP-dependent RNA helicase VASA; DEAD-BOX, protein 95.29
2j0s_A410 ATP-dependent RNA helicase DDX48; mRNA processing, 95.24
2fsf_A 853 Preprotein translocase SECA subunit; ATPase, DNA-R 95.04
1nkt_A 922 Preprotein translocase SECA 1 subunit; preprotein 94.92
3jux_A 822 Protein translocase subunit SECA; protein transloc 94.79
3pey_A 395 ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A 94.71
1c4o_A 664 DNA nucleotide excision repair enzyme UVRB; uvrabc 94.65
2d7d_A 661 Uvrabc system protein B; helicase, protein-DNA-ADP 94.44
3fht_A 412 ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box 94.29
3eiq_A414 Eukaryotic initiation factor 4A-I; PDCD4, anti-onc 94.17
1oyw_A 523 RECQ helicase, ATP-dependent DNA helicase; winged 94.06
1fuu_A394 Yeast initiation factor 4A; IF4A, helicase, DEAD-b 92.93
2v1x_A 591 ATP-dependent DNA helicase Q1; DNA strand annealin 92.65
2oca_A 510 DAR protein, ATP-dependent DNA helicase UVSW; ATP- 92.59
3sqw_A 579 ATP-dependent RNA helicase MSS116, mitochondrial; 91.73
3fho_A 508 ATP-dependent RNA helicase DBP5; mRNA export, ATPa 91.22
3i5x_A 563 ATP-dependent RNA helicase MSS116; protein-RNA com 90.65
3fmp_B 479 ATP-dependent RNA helicase DDX19B; nuclear porin, 87.92
3oiy_A 414 Reverse gyrase helicase domain; topoisomerase, DNA 86.21
3o8b_A 666 HCV NS3 protease/helicase; ntpase, RNA, translocat 85.78
3h1t_A 590 Type I site-specific restriction-modification syst 84.89
2eyq_A 1151 TRCF, transcription-repair coupling factor; MFD, S 80.84
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
Probab=99.93  E-value=1.9e-25  Score=200.86  Aligned_cols=196  Identities=21%  Similarity=0.310  Sum_probs=148.2

Q ss_pred             CCCchhhhhhhcchhhhhh---------hhhHHHHHHHHHhhhhhhhhcchhhhhhcCCCceEEEEEeeCCHHHHHHHHH
Q psy2047           1 MDSDSEDDARYEDKRKEQA---------TFEVEQVDQAKRIISPFMLRRLKKDVLTELPKKTALVIKVPMIPSQAEKYRG   71 (233)
Q Consensus         1 lg~~~~F~~~~~~~~~~~~---------~~~~~~~~~L~~~l~~~~lRRtk~~~~~~LP~k~e~~v~v~ls~~q~~lY~~   71 (233)
                      ||+..+|.++|..|+....         ..+.+++.+|+.++.|||+||+|+++...||+|++.+++|+||+.|+++|+.
T Consensus       250 l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~  329 (644)
T 1z3i_X          250 LGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL  329 (644)
T ss_dssp             HCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHH
T ss_pred             CCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHH
Confidence            5888999999999876543         3345678999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHHHHhhhcCCCCCCCCchhhhhhhccCCchh
Q psy2047          72 LMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYD  151 (233)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (233)
                      +.+........  .........+..++.||++||||.++.....           ..+.....     ..+   ..+   
T Consensus       330 ~~~~~~~~~~~--~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~-----------~~~~~~~~-----~~~---~~~---  385 (644)
T 1z3i_X          330 FLKQAKPVESL--QTGKISVSSLSSITSLKKLCNHPALIYEKCL-----------TGEEGFDG-----ALD---LFP---  385 (644)
T ss_dssp             HHHHHCGGGSS--CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHH-----------HTCTTCTT-----GGG---TSC---
T ss_pred             HHHHHHHHHHH--hcCccchhHHHHHHHHHHHhCCHHHHHHHHh-----------cccchhhh-----HHh---hcc---
Confidence            98876543321  1223456788999999999999998753211           00100000     000   000   


Q ss_pred             hHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHHh-CCCeEEEEechhhHHHHHHHHHHhcCCeEEEeeCCccc
Q psy2047         152 IHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLKK-NGHRVLIFSQFIFVLDILGHYMDIRGWRHLRLDGATQV  230 (233)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~~-~~~KvlIFSq~~~~Ld~l~~~l~~~gi~~~rldG~~~~  230 (233)
                                   ..+.........|+|+.++..++..+.. .++|+||||+|+.++++|+.+|...|+.|+++||+|+.
T Consensus       386 -------------~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~  452 (644)
T 1z3i_X          386 -------------QNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSI  452 (644)
T ss_dssp             -------------SSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCH
T ss_pred             -------------ccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCH
Confidence                         0001111123459999999999998864 57899999999999999999999999999999999987


Q ss_pred             CCC
Q psy2047         231 SSR  233 (233)
Q Consensus       231 ~~R  233 (233)
                      ++|
T Consensus       453 ~~R  455 (644)
T 1z3i_X          453 KKR  455 (644)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Back     alignment and structure
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A Back     alignment and structure
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Back     alignment and structure
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Back     alignment and structure
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Back     alignment and structure
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Back     alignment and structure
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Back     alignment and structure
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Back     alignment and structure
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Back     alignment and structure
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Back     alignment and structure
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Back     alignment and structure
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Back     alignment and structure
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Back     alignment and structure
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Back     alignment and structure
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Back     alignment and structure
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Back     alignment and structure
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Back     alignment and structure
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Back     alignment and structure
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Back     alignment and structure
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Back     alignment and structure
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} Back     alignment and structure
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Back     alignment and structure
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Back     alignment and structure
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A Back     alignment and structure
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Back     alignment and structure
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Back     alignment and structure
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Back     alignment and structure
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* Back     alignment and structure
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A Back     alignment and structure
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* Back     alignment and structure
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Back     alignment and structure
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* Back     alignment and structure
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* Back     alignment and structure
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Back     alignment and structure
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Back     alignment and structure
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* Back     alignment and structure
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Back     alignment and structure
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* Back     alignment and structure
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Back     alignment and structure
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A Back     alignment and structure
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Back     alignment and structure
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Back     alignment and structure
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... Back     alignment and structure
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} Back     alignment and structure
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 233
d1z3ix1 346 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi 1e-11
d1wp9a2286 c.37.1.19 (A:201-486) putative ATP-dependent RNA h 6e-06
d1z63a1230 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 h 2e-04
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

 Score = 61.1 bits (147), Expect = 1e-11
 Identities = 41/193 (21%), Positives = 67/193 (34%), Gaps = 39/193 (20%)

Query: 43  KDVLT-ELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLR 101
            D+L+  LP K   V+   + P Q E Y+  ++  K   + +    S  +S +S    L+
Sbjct: 2   SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKIS--VSSLSSITSLK 59

Query: 102 KMANHPLGLRYYFQENTLREIADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKT 161
           K+ NHP                  L+ +    G        D                  
Sbjct: 60  KLCNHPA-----------------LIYEKCLTGEEGFDGALD------------------ 84

Query: 162 LDCAKYKVPDDLVVESGKLKKLDEILPDLK-KNGHRVLIFSQFIFVLDILGHYMDIRGWR 220
           L    Y         SGK+  LD IL   +     +V++ S +   LD+       R + 
Sbjct: 85  LFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYL 144

Query: 221 HLRLDGATQVSSR 233
           ++RLDG   +  R
Sbjct: 145 YVRLDGTMSIKKR 157
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 Back     information, alignment and structure
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Length = 230 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query233
d1z3ix1 346 Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI 99.94
d1z5za1 244 Helicase of the SNF2/Rad54 hamily {Sulfolobus solf 99.88
d2fwra1200 DNA repair protein RAD25 {Archaeoglobus fulgidus [ 98.69
d1t5ia_ 168 Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo 98.02
d1s2ma2171 Putative ATP-dependent RNA helicase DHH1 {Baker's 97.78
d1fuka_162 Initiation factor 4a {Baker's yeast (Saccharomyces 97.7
d2rb4a1168 ATP-dependent RNA helicase DDX25 {Human (Homo sapi 97.59
d1wp9a2286 putative ATP-dependent RNA helicase PF2015 {Pyroco 97.52
d1hv8a2155 Putative DEAD box RNA helicase {Archaeon Methanoco 97.48
d1c4oa2 174 Nucleotide excision repair enzyme UvrB {Thermus th 97.4
d2j0sa2168 Probable ATP-dependent RNA helicase DDX48 {Human ( 97.34
d1t5la2 181 Nucleotide excision repair enzyme UvrB {Bacillus c 97.12
d1oywa3 200 RecQ helicase domain {Escherichia coli [TaxId: 562 96.94
d1jr6a_138 HCV helicase domain {Human hepatitis C virus (HCV) 96.25
d1a1va2 299 HCV helicase domain {Human hepatitis C virus (HCV) 95.28
d1tf5a4 175 Translocation ATPase SecA, nucleotide-binding doma 94.73
d1nkta4 219 Translocation ATPase SecA, nucleotide-binding doma 91.57
d1yksa2 299 YFV helicase domain {Yellow fever virus [TaxId: 11 89.97
d1xpja_124 Hypothetical protein VC0232 {Vibrio cholerae [TaxI 83.28
d2bmfa2305 Dengue virus helicase {Dengue virus type 2 [TaxId: 81.72
d1gkub2 248 Helicase-like "domain" of reverse gyrase {Archaeon 81.12
d2hfva175 Hypothetical protein RPA1041 {Rhodopseudomonas pal 81.0
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Rad54-like, Rad54L
species: Zebra fish (Danio rerio) [TaxId: 7955]

Probab=99.94  E-value=5.6e-27  Score=193.39  Aligned_cols=154  Identities=23%  Similarity=0.309  Sum_probs=111.8

Q ss_pred             hhhhhcCCCceEEEEEeeCCHHHHHHHHHHHHHHhhhcCCCCCCCCccchhhHHHHHHHHhhccccchhhccchhhHHHH
Q psy2047          43 KDVLTELPKKTALVIKVPMIPSQAEKYRGLMEDFKKTANPEGSNRSNEISHMSMFMMLRKMANHPLGLRYYFQENTLREI  122 (233)
Q Consensus        43 ~~~~~~LP~k~e~~v~v~ls~~q~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~~c~hp~l~~~~~~~~~~~~~  122 (233)
                      +.+.+.||||+|++|+|+||+.|+++|+.+++........  .......++|..+++|||+||||+|+.......     
T Consensus         3 ~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~--~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~-----   75 (346)
T d1z3ix1           3 DILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESL--QTGKISVSSLSSITSLKKLCNHPALIYEKCLTG-----   75 (346)
T ss_dssp             GGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSS--CTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHT-----
T ss_pred             hhhhccCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHhh--hcCCchHHHHHHHHHHHHHhCCHHHhhhhhccc-----
Confidence            3344589999999999999999999999998876543321  122334678999999999999999985321100     


Q ss_pred             HHhhhcCCCCCCCCchhhhhhhccCCchhhHhhhhcccccccccccCCchhhhccccHHHHHHHHhHHH-hCCCeEEEEe
Q psy2047         123 ADCLVEDPTYKGTNPQYILEDISWLSDYDIHQLSLKHKTLDCAKYKVPDDLVVESGKLKKLDEILPDLK-KNGHRVLIFS  201 (233)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~Kl~~l~~lL~~~~-~~~~KvlIFS  201 (233)
                            ....... .                       ................|+|+.+|.++|..+. ..|+|+||||
T Consensus        76 ------~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs  125 (346)
T d1z3ix1          76 ------EEGFDGA-L-----------------------DLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVS  125 (346)
T ss_dssp             ------CTTCTTG-G-----------------------GTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             ------cccccch-h-----------------------hhccccccccccccccCHHHHHHHHHHHHHHHhcCCceeEEe
Confidence                  0000000 0                       0000011112233456999999999999885 5689999999


Q ss_pred             chhhHHHHHHHHHHhcCCeEEEeeCCcccCCC
Q psy2047         202 QFIFVLDILGHYMDIRGWRHLRLDGATQVSSR  233 (233)
Q Consensus       202 q~~~~Ld~l~~~l~~~gi~~~rldG~~~~~~R  233 (233)
                      +|+.++++|+.+|...|+.|+++||+|+.++|
T Consensus       126 ~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R  157 (346)
T d1z3ix1         126 NYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKR  157 (346)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEECSSCCHHHH
T ss_pred             ehhhhhHHHHHHHhhhhccccccccchhHHHH
Confidence            99999999999999999999999999997654
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Back     information, alignment and structure
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Back     information, alignment and structure
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Back     information, alignment and structure
>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Back     information, alignment and structure
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure