Psyllid ID: psy2054

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Secondary Structure (PSIPRED)
cccccccHHHHHHHcHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHcHHHHHHHcccccEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHEEEcc
Coil and Loop (DISEMBL)
MDFSKISLEEAFQLGTSVFEIALldprlqisgaekiplRVKAIhivnqpfyFNALYAIFKPFLKQKLRRRWCLDG
Flexible Loop (DISEMBL)
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Low Complexity Region (SEG)
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Disordered region (IsUnstruct)
********EEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCL**
Disordered Region (DISOPRED)
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Disordered Region (DISEMBL)
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Disordered Region (DISPRO)
**FSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q5M7E1	332	Clavesin-1 OS=Xenopus lae	N/A	N/A	0.906	0.204	0.421	2e-08
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	yes	N/A	0.906	0.192	0.394	6e-08
Q8IUQ0	354	Clavesin-1 OS=Homo sapien	yes	N/A	0.906	0.192	0.394	6e-08
Q9D4C9	354	Clavesin-1 OS=Mus musculu	yes	N/A	0.906	0.192	0.394	6e-08
A6JUQ6	327	Clavesin-2 OS=Rattus norv	yes	N/A	0.906	0.207	0.394	6e-08
A6JFQ6	354	Clavesin-1 OS=Rattus norv	yes	N/A	0.906	0.192	0.394	6e-08
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.906	0.207	0.394	6e-08
Q5SYC1	327	Clavesin-2 OS=Homo sapien	no	N/A	0.906	0.207	0.394	6e-08
Q8BG92	327	Clavesin-2 OS=Mus musculu	no	N/A	0.906	0.207	0.381	1e-07
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.906	0.206	0.381	2e-07

>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  S ++A +L  S+        RL I G  +  P R   +H VNQP+Y +ALY I 
Sbjct: 162 IDWSNFSFKQASKLTPSIL-------RLAIEGLQDSFPARFGGVHFVNQPWYIHALYTII 214

Query: 60  KPFLKQKLRRRWCLDG 75
           KPFLK K R+R  L G
Sbjct: 215 KPFLKDKTRKRIFLHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Xenopus laevis (taxid: 8355)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  S ++A +L  S+ ++A       I G  +  P R   +H VNQP+Y +ALY + 
Sbjct: 184 IDWSNFSFKQASKLTPSILKLA-------IEGLQDSFPARFGGVHFVNQPWYIHALYTLI 236

Query: 60  KPFLKQKLRRRWCLDG 75
           KPFLK K R+R  L G
Sbjct: 237 KPFLKDKTRKRIFLHG 252

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  S ++A +L  S+ ++A       I G  +  P R   +H VNQP+Y +ALY + 
Sbjct: 184 IDWSNFSFKQASKLTPSILKLA-------IEGLQDSFPARFGGVHFVNQPWYIHALYTLI 236

Query: 60  KPFLKQKLRRRWCLDG 75
           KPFLK K R+R  L G
Sbjct: 237 KPFLKDKTRKRIFLHG 252

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  S ++A +L  S+ ++A       I G  +  P R   +H VNQP+Y +ALY + 
Sbjct: 184 IDWSNFSFKQASKLTPSILKLA-------IEGLQDSFPARFGGVHFVNQPWYIHALYTLI 236

Query: 60  KPFLKQKLRRRWCLDG 75
           KPFLK K R+R  L G
Sbjct: 237 KPFLKDKTRKRIFLHG 252

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  + ++A +L  S+        RL I G  +  P R   IH VNQP+Y +ALY + 
Sbjct: 162 IDWSNFTFKQASKLTPSML-------RLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVI 214

Query: 60  KPFLKQKLRRRWCLDG 75
           +PFLK+K R+R  L G
Sbjct: 215 RPFLKEKTRKRIFLHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  S ++A +L  S+ ++A       I G  +  P R   +H VNQP+Y +ALY + 
Sbjct: 184 IDWSNFSFKQASKLTPSILKLA-------IEGLQDSFPARFGGVHFVNQPWYIHALYTLI 236

Query: 60  KPFLKQKLRRRWCLDG 75
           KPFLK K R+R  L G
Sbjct: 237 KPFLKDKTRKRIFLHG 252

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  + ++A +L  S+        RL I G  +  P R   IH VNQP+Y +ALY + 
Sbjct: 162 IDWSNFTFKQASKLTPSML-------RLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVI 214

Query: 60  KPFLKQKLRRRWCLDG 75
           +PFLK+K R+R  L G
Sbjct: 215 RPFLKEKTRKRIFLHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  + ++A +L  S+        RL I G  +  P R   IH VNQP+Y +ALY + 
Sbjct: 162 IDWSNFTFKQASKLTPSML-------RLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVI 214

Query: 60  KPFLKQKLRRRWCLDG 75
           +PFLK+K R+R  L G
Sbjct: 215 RPFLKEKTRKRIFLHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  + ++A +L  ++        RL I G  +  P R   IH VNQP+Y +ALY + 
Sbjct: 162 IDWSNFTFKQASKLTPNML-------RLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVI 214

Query: 60  KPFLKQKLRRRWCLDG 75
           +PFLK+K R+R  L G
Sbjct: 215 RPFLKEKTRKRIFLHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 8/76 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG-AEKIPLRVKAIHIVNQPFYFNALYAIF 59
           +D+S  + ++A +L  S+        RL I G  +  P R   IH VNQP+Y +ALY + 
Sbjct: 162 IDWSNFTFKQASKLTPSML-------RLAIEGLQDSFPARFGGIHFVNQPWYIHALYTVI 214

Query: 60  KPFLKQKLRRRWCLDG 75
           +PFLK K R+R  + G
Sbjct: 215 RPFLKDKTRKRIFMHG 230

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
195436620	306	GK18196 [Drosophila willistoni] gi|19416	0.946	0.232	0.376	8e-10
195398111	306	GJ17977 [Drosophila virilis] gi|19414132	0.946	0.232	0.376	1e-09
195115180	306	GI17220 [Drosophila mojavensis] gi|19391	0.946	0.232	0.366	3e-09
195164660	337	GL21107 [Drosophila persimilis] gi|19847	0.946	0.210	0.366	3e-09
194762184	306	GF15843 [Drosophila ananassae] gi|190616	0.946	0.232	0.356	6e-09
307195425	301	Alpha-tocopherol transfer protein-like [	0.96	0.239	0.343	9e-09
340720606	306	PREDICTED: clavesin-1-like [Bombus terre	0.96	0.235	0.343	1e-08
350401213	309	PREDICTED: clavesin-1-like [Bombus impat	0.96	0.233	0.343	1e-08
19921536	324	CG10237, isoform B [Drosophila melanogas	0.946	0.219	0.356	2e-08
195345095	324	GM17010 [Drosophila sechellia] gi|194134	0.946	0.219	0.356	2e-08

>gi|195436620|ref|XP_002066255.1| GK18196 [Drosophila willistoni] gi|194162340|gb|EDW77241.1| GK18196 [Drosophila willistoni]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           ++SLEE F+      E A+L+P  QI+GA                              +
Sbjct: 151 QVSLEEVFKGAVIFLEAAMLEPETQINGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 210

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLR+KAIHIVNQP  FN ++A+FKPFL++KLR R    G
Sbjct: 211 SVPLRIKAIHIVNQPKIFNVVFALFKPFLREKLRNRIIFHG 251

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398111|ref|XP_002057668.1| GJ17977 [Drosophila virilis] gi|194141322|gb|EDW57741.1| GJ17977 [Drosophila virilis]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 52/101 (51%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           +++L+E F+      E A+L+P  QI+GA                              E
Sbjct: 151 QVTLDEVFKGAVIFLEAAMLEPETQINGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQE 210

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLRVKAIHIVNQP  FN ++A+FKPFL++KLR R    G
Sbjct: 211 SVPLRVKAIHIVNQPKIFNVVFALFKPFLREKLRSRIIFHG 251

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115180|ref|XP_002002142.1| GI17220 [Drosophila mojavensis] gi|193912717|gb|EDW11584.1| GI17220 [Drosophila mojavensis]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           +++L+E F+      E A+L+P  QI+GA                              +
Sbjct: 151 QVTLDEVFKGAVIFLEAAMLEPETQINGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 210

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLRVKAIHIVNQP  FN ++A+FKPFL++KLR R    G
Sbjct: 211 SVPLRVKAIHIVNQPKIFNVVFALFKPFLREKLRSRIIFHG 251

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195164660|ref|XP_002023164.1| GL21107 [Drosophila persimilis] gi|198473355|ref|XP_001356265.2| GA10180 [Drosophila pseudoobscura pseudoobscura] gi|194105249|gb|EDW27292.1| GL21107 [Drosophila persimilis] gi|198139419|gb|EAL33328.2| GA10180 [Drosophila pseudoobscura pseudoobscura]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           ++SL+E F+      E A+L+P  QI GA                              +
Sbjct: 182 QVSLDEVFKGAVIFLEAAMLEPETQIHGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 241

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLR+KAIHIVNQP  FN ++A+FKPFL++KLR R    G
Sbjct: 242 SVPLRIKAIHIVNQPKMFNVVFALFKPFLREKLRGRIIFHG 282

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762184|ref|XP_001963236.1| GF15843 [Drosophila ananassae] gi|190616933|gb|EDV32457.1| GF15843 [Drosophila ananassae]

 Score = 64.7 bits (156), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           +++L+E F+      E A+L+P  QI GA                              +
Sbjct: 151 QVTLDEVFKGAVIFLEAAMLEPETQICGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 210

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLR+KAIHIVNQP  FN ++A+FKPFL++KLR R    G
Sbjct: 211 SVPLRIKAIHIVNQPKIFNVVFALFKPFLREKLRSRIIFHG 251

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195425|gb|EFN77311.1| Alpha-tocopherol transfer protein-like [Harpegnathos saltator]

 Score = 64.3 bits (155), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 30/102 (29%)

Query: 4   SKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------ 33
           +K+SL+E ++      E A+L+P  QI+GA                              
Sbjct: 145 NKVSLDEVYKGCVLFLEAAMLEPTTQIAGAIVIFDMDGLSLQQTWQFTPPFAKRIVDLLQ 204

Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
           + +PLR+K IHIVNQP+ FN ++A+FKPFL++KL+ R    G
Sbjct: 205 DAMPLRIKNIHIVNQPYVFNMVFALFKPFLREKLKNRIIFHG 246

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720606|ref|XP_003398725.1| PREDICTED: clavesin-1-like [Bombus terrestris]

 Score = 64.3 bits (155), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 30/102 (29%)

Query: 4   SKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------ 33
           +K SL+E F+      E A+L+P  QI+GA                              
Sbjct: 151 NKCSLDEVFKGCVLYVEAAMLEPNTQIAGAVVVFDMDGLTLQQAWQFTPAIAKRIVDWLQ 210

Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
           + +PLR+K IHI+NQP+ FN ++A+FKPFL++KL+ R    G
Sbjct: 211 DAVPLRIKNIHIINQPYVFNMVFALFKPFLREKLKSRLIFHG 252

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401213|ref|XP_003486085.1| PREDICTED: clavesin-1-like [Bombus impatiens]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 30/102 (29%)

Query: 4   SKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------ 33
           +K SL+E F+      E A+L+P  QI+GA                              
Sbjct: 154 NKCSLDEVFKGCVLYVEAAMLEPNTQIAGAVVVFDMDGLTLQQAWQFTPAIAKRIVDWLQ 213

Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
           + +PLR+K IHI+NQP+ FN ++A+FKPFL++KL+ R    G
Sbjct: 214 DAVPLRIKNIHIINQPYVFNMVFALFKPFLREKLKSRLIFHG 255

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19921536|ref|NP_609967.1| CG10237, isoform B [Drosophila melanogaster] gi|16769584|gb|AAL29011.1| LD41874p [Drosophila melanogaster] gi|22946834|gb|AAF53799.2| CG10237, isoform B [Drosophila melanogaster] gi|220946856|gb|ACL85971.1| CG10237-PA [synthetic construct]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           +++L+E F+      E A+L+P  QI GA                              +
Sbjct: 169 QVTLDEVFKGAVLFLEAAMLEPETQICGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 228

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLR+KAIHIVNQP  F  ++A+FKPFLK+KLR R    G
Sbjct: 229 SVPLRIKAIHIVNQPKIFQVVFALFKPFLKEKLRSRIIFHG 269

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195345095|ref|XP_002039111.1| GM17010 [Drosophila sechellia] gi|194134241|gb|EDW55757.1| GM17010 [Drosophila sechellia]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 30/101 (29%)

Query: 5   KISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------E 34
           +++L+E F+      E A+L+P  QI GA                              +
Sbjct: 169 QVTLDEVFKGAVLFLEAAMLEPETQICGAVVIFDMDGLSLQQTWQFTPPFAKRIVDWLQD 228

Query: 35  KIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
            +PLR+KAIHIVNQP  F  ++A+FKPFLK+KLR R    G
Sbjct: 229 SVPLRIKAIHIVNQPKIFQVVFALFKPFLKEKLRSRIIFHG 269

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
FB|FBgn0032783	324	CG10237 [Drosophila melanogast	0.906	0.209	0.459	9.4e-10
UNIPROTKB|Q5M7E1	332	clvs1 "Clavesin-1" [Xenopus la	0.92	0.207	0.413	1.3e-08
UNIPROTKB|F1N952	228	CLVS1 "Uncharacterized protein	0.853	0.280	0.4	1.5e-08
FB|FBgn0031913	294	CG5958 [Drosophila melanogaste	0.92	0.234	0.426	1.6e-08
UNIPROTKB|F1NRV2	334	CLVS1 "Uncharacterized protein	0.92	0.206	0.4	1.7e-08
UNIPROTKB|F1LRF3	351	Clvs1 "Clavesin-1" [Rattus nor	0.92	0.196	0.4	1.8e-08
UNIPROTKB|E2RE25	354	CLVS1 "Uncharacterized protein	0.92	0.194	0.4	1.9e-08
UNIPROTKB|Q8IUQ0	354	CLVS1 "Clavesin-1" [Homo sapie	0.92	0.194	0.4	1.9e-08
UNIPROTKB|F1RT89	354	CLVS1 "Uncharacterized protein	0.92	0.194	0.4	1.9e-08
UNIPROTKB|Q5RCA6	354	CLVS1 "Clavesin-1" [Pongo abel	0.92	0.194	0.4	1.9e-08

FB|FBgn0032783 CG10237 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 9.4e-10, P = 9.4e-10
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query:     2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
             D   +SL++ +Q  T  F   ++D  LQ    + +PLR+KAIHIVNQP  F  ++A+FKP
Sbjct:   202 DMDGLSLQQTWQF-TPPFAKRIVD-WLQ----DSVPLRIKAIHIVNQPKIFQVVFALFKP 255

Query:    62 FLKQKLRRRWCLDG 75
             FLK+KLR R    G
Sbjct:   256 FLKEKLRSRIIFHG 269

GO:0016918 "retinal binding" evidence=ISS

GO:0008431 "vitamin E binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5M7E1 clvs1 "Clavesin-1" [Xenopus laevis (taxid:8355)]

 Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 31/75 (41%), Positives = 44/75 (58%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+  +A+    LQ    +  P R   +H VNQP+Y +ALY I K
Sbjct:   162 IDWSNFSFKQASKLTPSILRLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTIIK 215

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   216 PFLKDKTRKRIFLHG 230

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

UNIPROTKB|F1N952 CLVS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 131 (51.2 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 28/70 (40%), Positives = 43/70 (61%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   164 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 217

Query:    61 PFLKQKLRRR 70
             PFLK K R+R
Sbjct:   218 PFLKDKTRKR 227

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

FB|FBgn0031913 CG5958 [Drosophila melanogaster (taxid:7227)]

 Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 32/75 (42%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             MDF  +S+++   L  S F   LL   +Q    E +PLR+K +H V QPF FN ++++FK
Sbjct:   171 MDFEGLSMKQVKALSPS-FSKRLLT-FIQ----EAMPLRMKEVHFVKQPFIFNMVWSLFK 224

Query:    61 PFLKQKLRRRWCLDG 75
             PF+KQKL  R    G
Sbjct:   225 PFVKQKLNNRMHFHG 239

GO:0016918 "retinal binding" evidence=ISS

GO:0005215 "transporter activity" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

UNIPROTKB|F1NRV2 CLVS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 135 (52.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   164 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 217

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   218 PFLKDKTRKRIFLHG 232

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

UNIPROTKB|F1LRF3 Clvs1 "Clavesin-1" [Rattus norvegicus (taxid:10116)]

 Score = 135 (52.6 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   181 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 234

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   235 PFLKDKTRKRIFLHG 249

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|E2RE25 CLVS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   184 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 237

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   238 PFLKDKTRKRIFLHG 252

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q8IUQ0 CLVS1 "Clavesin-1" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   184 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 237

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   238 PFLKDKTRKRIFLHG 252

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|F1RT89 CLVS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   184 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 237

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   238 PFLKDKTRKRIFLHG 252

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5RCA6 CLVS1 "Clavesin-1" [Pongo abelii (taxid:9601)]

 Score = 135 (52.6 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 30/75 (40%), Positives = 45/75 (60%)

Query:     1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
             +D+S  S ++A +L  S+ ++A+    LQ    +  P R   +H VNQP+Y +ALY + K
Sbjct:   184 IDWSNFSFKQASKLTPSILKLAI--EGLQ----DSFPARFGGVHFVNQPWYIHALYTLIK 237

Query:    61 PFLKQKLRRRWCLDG 75
             PFLK K R+R  L G
Sbjct:   238 PFLKDKTRKRIFLHG 252

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	75
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	4e-10
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	1e-08
smart00516	158	smart00516, SEC14, Domain in homologues of a S	9e-08

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
           +D   +SL       + + +I  +         +  P R+KA++I+N P++F  L+ I K
Sbjct: 68  IDLKGLSLSHLLPDPSLLKKILKILQ-------DNYPERLKAVYIINPPWFFKVLWKIVK 120

Query: 61  PFLKQKLRRRW 71
           PFL +K R++ 
Sbjct: 121 PFLSEKTRKKI 131

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 36  IPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
            P R+  I IVN P+ FN ++ + KPFL  K R +
Sbjct: 90  YPERLGKILIVNAPWIFNVIWKLIKPFLDPKTREK 124

Length = 152

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 45.8 bits (109), Expect = 9e-08
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRW 71
           P R+  ++I+N P++F  L+ I KPFL +K R + 
Sbjct: 95  PERLGKVYIINPPWFFRVLWKIIKPFLDEKTREKI 129

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.73
KOG1471|consensus	317		99.67
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.67
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.53
KOG1470|consensus	324		98.92
KOG4406|consensus	467		95.75
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	93.53

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.73  E-value=4e-18  Score=103.26  Aligned_cols=75  Identities=31%  Similarity=0.504  Sum_probs=61.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCc--ccccCc------------------------------CccccccceEEEEeC
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPR--LQISGA------------------------------EKIPLRVKAIHIVNQ   48 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~--~q~~G~------------------------------~~~P~R~k~ih~iN~   48 (75)
                      +|+++++..|+.|+..+.+|.++...+  .++.|+                              ++||.|++++|++|+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~~~k~~~~~~~~~yP~rl~~i~iin~  108 (159)
T PF00650_consen   29 FDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPISFLKKIIQLLQDHYPERLGKIYIINA  108 (159)
T ss_dssp             --HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHHHHHHHHHHHHHHSTTTEEEEEEES-
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhhhhhhhhhhhcccCCccceeEEEEec
Confidence            577889999999999999999995543  355555                              899999999999999


Q ss_pred             ChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          49 PFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        49 P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      |++++.+|++++|||++|+++||++|+
T Consensus       109 p~~~~~~~~~~~~~l~~~~~~ki~~~~  135 (159)
T PF00650_consen  109 PWFFRVLWKIVKPFLSPKTREKIVFHS  135 (159)
T ss_dssp             -TTHHHHHHHHGGGS-HHHHCTEEEEC
T ss_pred             ChhhhhhHhHHHhhcCHhhheeEEEEC
Confidence            999999999999999999999999984

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>KOG1471|consensus

Probab=99.67  E-value=2.1e-17  Score=110.36  Aligned_cols=73  Identities=38%  Similarity=0.604  Sum_probs=66.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCChh
Q psy2054           2 DFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~~   51 (75)
                      |+.+++..+..+...+.+|...++++.+++|.                              ++||.|++++||||+|++
T Consensus       130 ~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~  209 (317)
T KOG1471|consen  130 DYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTI  209 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchh
Confidence            45667888999999999999998887777776                              999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhccce-ec
Q psy2054          52 FNALYAIFKPFLKQKLRRRWC-LD   74 (75)
Q Consensus        52 ~~~~~~~~k~fl~~Kl~~Ri~-~h   74 (75)
                      |+.+|+++||||++|+++||+ +|
T Consensus       210 f~~~~~~ikpfL~~kt~~ki~~~~  233 (317)
T KOG1471|consen  210 FSALWKVVKPFLDEKTRKKIHVLH  233 (317)
T ss_pred             HHHHHHHHhccCCHHHHhhheecC
Confidence            999999999999999999999 54

>smart00516 SEC14 Domain in homologues of a S

Probab=99.67  E-value=1.4e-16  Score=96.42  Aligned_cols=75  Identities=32%  Similarity=0.565  Sum_probs=67.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC--CcccccCc---------------------------CccccccceEEEEeCChh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLD--PRLQISGA---------------------------EKIPLRVKAIHIVNQPFY   51 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~--~~~q~~G~---------------------------~~~P~R~k~ih~iN~P~~   51 (75)
                      +|++.++.++++|+..+.+|.++.+  ++.++.|+                           ++||.|++++|++|+|++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~yp~~l~~i~ivn~p~~  109 (158)
T smart00516       30 FDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVLIINPPWF  109 (158)
T ss_pred             cccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHHhHHHhCeEEEECCCHH
Confidence            4678999999999999999999986  45555555                           999999999999999999


Q ss_pred             HHHHHHHHHhhhhHHHhccceecC
Q psy2054          52 FNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        52 ~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      ++.+++++++|+++|+++||++|+
T Consensus       110 ~~~~~~~~~~~l~~~~~~ki~~~~  133 (158)
T smart00516      110 FRVLWKIIKPFLDEKTREKIRFVG  133 (158)
T ss_pred             HHHHHHHHHhhcChhhhccEEEeC
Confidence            999999999999999999999874

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.53  E-value=2.3e-14  Score=85.35  Aligned_cols=70  Identities=33%  Similarity=0.591  Sum_probs=63.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCcccccCc-----------------------------CccccccceEEEEeCChhHHHHH
Q psy2054           6 ISLEEAFQLGTSVFEIALLDPRLQISGA-----------------------------EKIPLRVKAIHIVNQPFYFNALY   56 (75)
Q Consensus         6 ~s~~~~~r~~~~~~e~~l~~~~~q~~G~-----------------------------~~~P~R~k~ih~iN~P~~~~~~~   56 (75)
                      .+.++.++...+.+|..+.++..+..|.                             ++||.|++.+|++|+|++++.++
T Consensus        37 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~  116 (157)
T cd00170          37 LDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLW  116 (157)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccchhHHHHHHHHHHHHHhChHhhCeEEEECCCHhHHHHH
Confidence            3448999999999999998877664454                             99999999999999999999999


Q ss_pred             HHHHhhhhHHHhccceecC
Q psy2054          57 AIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        57 ~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +++++|+++|+++||++|+
T Consensus       117 ~~~~~~l~~~~~~ki~~~~  135 (157)
T cd00170         117 KIVKPFLSEKTRKKIVFLG  135 (157)
T ss_pred             HHHHHhcCHhhhhhEEEec
Confidence            9999999999999999874

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>KOG1470|consensus

Probab=98.92  E-value=1.3e-09  Score=74.10  Aligned_cols=71  Identities=27%  Similarity=0.345  Sum_probs=61.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHhcCCc-c--ccc------Cc------------------CccccccceEEEEeCChhHHHH
Q psy2054           3 FSKISLEEAFQLGTSVFEIALLDPR-L--QIS------GA------------------EKIPLRVKAIHIVNQPFYFNAL   55 (75)
Q Consensus         3 p~~~s~~~~~r~~~~~~e~~l~~~~-~--q~~------G~------------------~~~P~R~k~ih~iN~P~~~~~~   55 (75)
                      ++.-|..+..|...+++|.++.... .  |+.      |.                  ++||.|+....++|+|++|+.+
T Consensus       122 qn~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~~  201 (324)
T KOG1470|consen  122 QNTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDHYPERLGKALLVNAPWIFQPF  201 (324)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcccCCCcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHHH
Confidence            5778999999999999999875422 1  333      33                  9999999999999999999999


Q ss_pred             HHHHHhhhhHHHhcccee
Q psy2054          56 YAIFKPFLKQKLRRRWCL   73 (75)
Q Consensus        56 ~~~~k~fl~~Kl~~Ri~~   73 (75)
                      |+++|||+.++++++|.|
T Consensus       202 wkiikpflDp~t~~Kv~F  219 (324)
T KOG1470|consen  202 WKIIKPFLDPKTASKVKF  219 (324)
T ss_pred             HHHhhhccChhhhceeEE
Confidence            999999999999999986

>KOG4406|consensus

Probab=95.75  E-value=0.019  Score=40.88  Aligned_cols=62  Identities=15%  Similarity=0.313  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCccc---ccCc-------------------CccccccceEEEEeCChhHHHHHHHHHhhhhHHHh
Q psy2054          11 AFQLGTSVFEIALLDPRLQ---ISGA-------------------EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLR   68 (75)
Q Consensus        11 ~~r~~~~~~e~~l~~~~~q---~~G~-------------------~~~P~R~k~ih~iN~P~~~~~~~~~~k~fl~~Kl~   68 (75)
                      .++.....+|..++++-+-   -.|.                   ..+---+|++++|..-++..++|+++|||.+.|-.
T Consensus       115 li~~~v~~id~~Ve~DYt~vYfh~gl~s~nkp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kplIS~KF~  194 (467)
T KOG4406|consen  115 LISYLVYTIDKYVENDYTLVYFHHGLPSDNKPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPLISLKFT  194 (467)
T ss_pred             HHHHHHHHHHHHHhccceeeehhcCCcccccchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhhcchhhh
Confidence            7888999999999887443   2444                   45666789999999999999999999999999998


Q ss_pred             ccce
Q psy2054          69 RRWC   72 (75)
Q Consensus        69 ~Ri~   72 (75)
                      ++|+
T Consensus       195 rKi~  198 (467)
T KOG4406|consen  195 RKII  198 (467)
T ss_pred             ceeE
Confidence            8875

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=93.53  E-value=0.041  Score=32.93  Aligned_cols=39  Identities=18%  Similarity=0.538  Sum_probs=30.3

Q ss_pred             CccccccceEEEEeCChhHHHHH-HHHHhhhhHHH-hccce
Q psy2054          34 EKIPLRVKAIHIVNQPFYFNALY-AIFKPFLKQKL-RRRWC   72 (75)
Q Consensus        34 ~~~P~R~k~ih~iN~P~~~~~~~-~~~k~fl~~Kl-~~Ri~   72 (75)
                      ..++-+++.++++|++++++.++ .+.+++.++|. ..++.
T Consensus        79 ~~~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~  119 (149)
T PF13716_consen   79 RKYKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVV  119 (149)
T ss_dssp             HHHHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEE
T ss_pred             HHHhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEE
Confidence            56777899999999999999999 67788888887 66654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		2e-06
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		3e-06
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		1e-05
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		4e-05

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2   DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
           D        AFQ+  SV +      ++     +  PL+V+ IH++N+P  F+A++++ KP
Sbjct: 159 DLEGWQFSHAFQITPSVAK------KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKP 212
Query: 62  FLKQKLRRRWCLDG 75
           FL +K++ R  + G
Sbjct: 213 FLTEKIKERIHMHG 226

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 2   DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
           +F   ++++A  L TS  ++  +   LQ S     P R KAIH ++QP+YF   Y + KP
Sbjct: 202 NFKGFTMQQAASLRTS--DLRKMVDMLQDS----FPARFKAIHFIHQPWYFTTTYNVVKP 255
Query: 62  FLKQKLRRRWCLDG 75
           FLK KL  R  + G
Sbjct: 256 FLKSKLLERVFVHG 269

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 6/74 (8%)
Query: 2   DFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFKP 61
           D        AFQ+  SV +      ++     +  PL+V+ IH++N+P  F+A+++  KP
Sbjct: 143 DLEGWQFSHAFQITPSVAK------KIAAVLTDSFPLKVRGIHLINEPVIFHAVFSXIKP 196
Query: 62  FLKQKLRRRWCLDG 75
           FL +K++ R    G
Sbjct: 197 FLTEKIKERIHXHG 210

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRRWCLDG 75
           +  P   KAIH ++QP+YF   Y + KPFLK KL  R  + G
Sbjct: 228 DSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLERVFVHG 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	1e-15
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	1e-15
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	8e-09
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	3e-05
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	4e-05

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score = 67.7 bits (166), Expect = 1e-15
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA--------------------------- 33
            D    +  + F++     E+ + +   Q +G                            
Sbjct: 106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 165

Query: 34  ---EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
              +  PL+V+ IH++N+P  F+A++++ KPFL +K++ R
Sbjct: 166 VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 205

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score = 68.2 bits (167), Expect = 1e-15
 Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKI------------------------ 36
               +I+ +E  Q    + E  L +   QI+G   I                        
Sbjct: 165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVD 224

Query: 37  ------PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
                 P   KAIH ++QP+YF   Y + KPFLK KL  R
Sbjct: 225 MLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER 264

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score = 49.2 bits (117), Expect = 8e-09
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
           P  +K + +V  P  F   Y + KPFL +  R++
Sbjct: 183 PETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 216

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR 69
           P R+   +I++ PF F+ ++ + KPFL      
Sbjct: 218 PERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVS 250

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 37  PLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRR 69
           P R+   +I+N PF F+  + +FKPFL      
Sbjct: 203 PERMGKFYIINAPFGFSTAFRLFKPFLDPVTVS 235

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.81
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	99.81
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.68
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.63
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.58
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	91.82
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	88.64

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.81  E-value=4.8e-20  Score=118.72  Aligned_cols=75  Identities=28%  Similarity=0.608  Sum_probs=70.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCCh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPF   50 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~   50 (75)
                      +||+.++..+++|+..+++|.++.+++.|+.|.                              ++||.|++++|+||+|+
T Consensus       106 ~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~  185 (262)
T 1r5l_A          106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV  185 (262)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCG
T ss_pred             cCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCH
Confidence            689999999999999999999998887776665                              99999999999999999


Q ss_pred             hHHHHHHHHHhhhhHHHhccceecC
Q psy2054          51 YFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        51 ~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +|+.+|+++||||++|+++||++|+
T Consensus       186 ~f~~~~~~vkpfl~~~t~~Ki~~~~  210 (262)
T 1r5l_A          186 IFHAVFSMIKPFLTEKIKERIHMHG  210 (262)
T ss_dssp             GGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred             HHHHHHHHHHHhcCHHHHhheEEeC
Confidence            9999999999999999999999985

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=99.81  E-value=3.4e-20  Score=123.42  Aligned_cols=75  Identities=36%  Similarity=0.607  Sum_probs=70.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCCh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPF   50 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~   50 (75)
                      |||++++.++++|+..+++|.++.+++.|+.|+                              ++||.|++++|+||+|+
T Consensus       165 ~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~  244 (316)
T 3hx3_A          165 WQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPW  244 (316)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCH
Confidence            689999999999999999999998887777776                              99999999999999999


Q ss_pred             hHHHHHHHHHhhhhHHHhccceecC
Q psy2054          51 YFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        51 ~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +|+.+|+++||||++|+++||++||
T Consensus       245 ~f~~i~~ivkpfl~~kt~~KI~~~~  269 (316)
T 3hx3_A          245 YFTTTYNVVKPFLKSKLLERVFVHG  269 (316)
T ss_dssp             THHHHHHHHGGGCCHHHHTTEEEEE
T ss_pred             HHHHHHHHHHHhCCHHhhhheEEeC
Confidence            9999999999999999999999984

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.68  E-value=2.1e-17  Score=112.42  Aligned_cols=71  Identities=24%  Similarity=0.408  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCccc-------ccCc------------------------------CccccccceEEEEe
Q psy2054           5 KISLEEAFQLGTSVFEIALLDPRLQ-------ISGA------------------------------EKIPLRVKAIHIVN   47 (75)
Q Consensus         5 ~~s~~~~~r~~~~~~e~~l~~~~~q-------~~G~------------------------------~~~P~R~k~ih~iN   47 (75)
                      .++.++++|+..+++|.++.+...|       +.|+                              ++||.|++++|+||
T Consensus       114 ~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN  193 (403)
T 1olm_A          114 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVK  193 (403)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEe
Confidence            5899999999999999998876543       3343                              99999999999999


Q ss_pred             CChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          48 QPFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        48 ~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +|++|+.+|+++||||++|+++||++|+
T Consensus       194 ~P~~f~~i~~~ikpfl~~~t~~KI~~~~  221 (403)
T 1olm_A          194 APKLFPVAYNLIKPFLSEDTRKKIMVLG  221 (403)
T ss_dssp             CCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred             CCHHHHHHHHHHHhhcCHhhhceEEEEC
Confidence            9999999999999999999999999985

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.63  E-value=2.5e-16  Score=103.35  Aligned_cols=70  Identities=24%  Similarity=0.342  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHHHHHHHhcCCc--------ccc---------cCc--------------------CccccccceEEEEeC
Q psy2054           6 ISLEEAFQLGTSVFEIALLDPR--------LQI---------SGA--------------------EKIPLRVKAIHIVNQ   48 (75)
Q Consensus         6 ~s~~~~~r~~~~~~e~~l~~~~--------~q~---------~G~--------------------~~~P~R~k~ih~iN~   48 (75)
                      .+.++++|...+.+|.+++...        .++         .|.                    ++||.|++++|+||+
T Consensus       135 ~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~  214 (296)
T 1aua_A          135 TSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINA  214 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECc
Confidence            5889999999999998775421        112         222                    899999999999999


Q ss_pred             ChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          49 PFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        49 P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      |++|+.+|+++||||++|+++||++|+
T Consensus       215 P~~f~~~~~iikpfl~~~t~~KI~~~~  241 (296)
T 1aua_A          215 PFGFSTAFRLFKPFLDPVTVSKIFILG  241 (296)
T ss_dssp             CHHHHHHHHHHGGGSCHHHHTTEEECC
T ss_pred             hHHHHHHHHHHHhhcCHhhcceEEEeC
Confidence            999999999999999999999999985

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.58  E-value=4e-16  Score=104.15  Aligned_cols=69  Identities=19%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             CHHHHHHHHHHHHHHHhcC---CcccccC--------------c--------------------CccccccceEEEEeCC
Q psy2054           7 SLEEAFQLGTSVFEIALLD---PRLQISG--------------A--------------------EKIPLRVKAIHIVNQP   49 (75)
Q Consensus         7 s~~~~~r~~~~~~e~~l~~---~~~q~~G--------------~--------------------~~~P~R~k~ih~iN~P   49 (75)
                      +.++++|...+.+|.+++.   +..|..|              .                    ++||.|++++|+||+|
T Consensus       151 ~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P  230 (320)
T 3q8g_A          151 TEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSP  230 (320)
T ss_dssp             CHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCC
T ss_pred             CHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCC
Confidence            7788999999999988754   1223333              2                    8999999999999999


Q ss_pred             hhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          50 FYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        50 ~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      ++|+.+|+++||||++|+++||++|+
T Consensus       231 ~~f~~~~~~ikpfl~~~t~~KI~~~~  256 (320)
T 3q8g_A          231 FGFSTMFKMVKPFLDPVTVSKIFILG  256 (320)
T ss_dssp             TTHHHHHTTTGGGSCHHHHHTEEECC
T ss_pred             HHHHHHHHHHHHhCCHHHhhhEEEeC
Confidence            99999999999999999999999985

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=91.82  E-value=0.26  Score=31.70  Aligned_cols=72  Identities=11%  Similarity=-0.037  Sum_probs=47.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhcCCccc---ccCc-------------------CccccccceEEEEeCChhHHHHHHH-
Q psy2054           2 DFSKISLEEAFQLGTSVFEIALLDPRLQ---ISGA-------------------EKIPLRVKAIHIVNQPFYFNALYAI-   58 (75)
Q Consensus         2 dp~~~s~~~~~r~~~~~~e~~l~~~~~q---~~G~-------------------~~~P~R~k~ih~iN~P~~~~~~~~~-   58 (75)
                      +++..+.+.++.....++|.+...+-.-   ..|.                   ..+.-.+++++++|++.++...+.. 
T Consensus        34 ~~~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~~~n~p~~~wl~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~  113 (256)
T 3pg7_A           34 KTGQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYH  113 (256)
T ss_dssp             CBTTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCCGGGCCCHHHHHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCCcccCCcHHHHHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHH
Confidence            4455667777777777777655433221   1333                   5566788999999999999976654 


Q ss_pred             HHhhhhHHHhcccee
Q psy2054          59 FKPFLKQKLRRRWCL   73 (75)
Q Consensus        59 ~k~fl~~Kl~~Ri~~   73 (75)
                      .++|.+.|..+++++
T Consensus       114 ~~~~~~~k~~~Ki~f  128 (256)
T 3pg7_A          114 ERLLTGLKGSKRLVF  128 (256)
T ss_dssp             HHHHTTTTTCTTEEE
T ss_pred             hccccccccCCcEEE
Confidence            566666566666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	75
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	3e-08
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	2e-05
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	5e-05

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-08
 Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 30/100 (30%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISG---------------------------- 32
            D    +  + F++     E+ + +   Q +G                            
Sbjct: 32  WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAA 91

Query: 33  --AEKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
              +  PL+V+ IH++N+P  F+A++++ KPFL +K++ R
Sbjct: 92  VLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKIKER 131

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (88), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 34  EKIPLRVKAIHIVNQPFYFNALYAIFKPFLKQKLRRR 70
           E  P  +K + +V  P  F   Y + KPFL +  R++
Sbjct: 105 ENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKK 141

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 5e-05
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)

Query: 1   MDFSKISLEEAFQLGTSVFEIALLDPRLQISGAEKIPLRVKAIHIVNQPFYFNALYAIFK 60
           MD   IS+  A+ + + V E + +            P R+   +I+N PF F+  + +FK
Sbjct: 81  MDLKGISISSAYSVMSYVREASYISQN-------YYPERMGKFYIINAPFGFSTAFRLFK 133

Query: 61  PFLKQKLRRR 70
           PFL      +
Sbjct: 134 PFLDPVTVSK 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.87
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.58
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.46

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.3e-22  Score=124.55  Aligned_cols=75  Identities=28%  Similarity=0.608  Sum_probs=72.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcCCcccccCc------------------------------CccccccceEEEEeCCh
Q psy2054           1 MDFSKISLEEAFQLGTSVFEIALLDPRLQISGA------------------------------EKIPLRVKAIHIVNQPF   50 (75)
Q Consensus         1 ~dp~~~s~~~~~r~~~~~~e~~l~~~~~q~~G~------------------------------~~~P~R~k~ih~iN~P~   50 (75)
                      |||++++..|++|...+++|.++.+++.|++|+                              ++||.|++++|+||+|+
T Consensus        32 ~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~  111 (185)
T d1r5la2          32 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPV  111 (185)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCG
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhccHHHHHHHHHHHHhhCchhhheeEEEcCCH
Confidence            699999999999999999999999999998887                              99999999999999999


Q ss_pred             hHHHHHHHHHhhhhHHHhccceecC
Q psy2054          51 YFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        51 ~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +++.+|+++||||++|+++||++|+
T Consensus       112 ~~~~~~~~vk~fl~~k~~~Ki~~~~  136 (185)
T d1r5la2         112 IFHAVFSMIKPFLTEKIKERIHMHG  136 (185)
T ss_dssp             GGHHHHHHHGGGSCHHHHTTEEECC
T ss_pred             HHHHHHHHHHHhccHHHHhheEEec
Confidence            9999999999999999999999985

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.1e-15  Score=94.32  Aligned_cols=71  Identities=25%  Similarity=0.442  Sum_probs=60.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCccc-------c---------cCc---------------------CccccccceEEEEe
Q psy2054           5 KISLEEAFQLGTSVFEIALLDPRLQ-------I---------SGA---------------------EKIPLRVKAIHIVN   47 (75)
Q Consensus         5 ~~s~~~~~r~~~~~~e~~l~~~~~q-------~---------~G~---------------------~~~P~R~k~ih~iN   47 (75)
                      ..+.++++|+..+.+|.++.....+       +         .|.                     ++||.|++++|+||
T Consensus        39 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN  118 (199)
T d1olma3          39 SASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVK  118 (199)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhhhccccHHHHHHHHHHHHHHHHHhhhheEEEC
Confidence            4678899999999999987643211       2         222                     89999999999999


Q ss_pred             CChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          48 QPFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        48 ~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +|++|..+|+++||||++++++||++|+
T Consensus       119 ~P~~f~~~w~ivk~fl~~~t~~KI~~~~  146 (199)
T d1olma3         119 APKLFPVAYNLIKPFLSEDTRKKIMVLG  146 (199)
T ss_dssp             CCTTHHHHHHHHGGGSCHHHHHTEEECC
T ss_pred             CCHHHHHHHHHHHHhcCHHhhccEEEeC
Confidence            9999999999999999999999999985

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=6.4e-14  Score=86.13  Aligned_cols=71  Identities=24%  Similarity=0.329  Sum_probs=60.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhcCCc--------ccc---------cCc--------------------CccccccceEEEEe
Q psy2054           5 KISLEEAFQLGTSVFEIALLDPR--------LQI---------SGA--------------------EKIPLRVKAIHIVN   47 (75)
Q Consensus         5 ~~s~~~~~r~~~~~~e~~l~~~~--------~q~---------~G~--------------------~~~P~R~k~ih~iN   47 (75)
                      ..+.++++|+..+.+|.++....        .++         .|.                    ++||.|++.+|++|
T Consensus        41 ~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s~~~~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN  120 (203)
T d1auaa2          41 VTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIIN  120 (203)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEES
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCChHHhhhHHHHHHHHHHHHHHhChHhhcceEEEC
Confidence            45888999999999998875421        111         232                    99999999999999


Q ss_pred             CChhHHHHHHHHHhhhhHHHhccceecC
Q psy2054          48 QPFYFNALYAIFKPFLKQKLRRRWCLDG   75 (75)
Q Consensus        48 ~P~~~~~~~~~~k~fl~~Kl~~Ri~~h~   75 (75)
                      +|++++.+|+++||||++++++||++++
T Consensus       121 ~P~~~~~~~~~vk~fl~~~t~~KI~~~~  148 (203)
T d1auaa2         121 APFGFSTAFRLFKPFLDPVTVSKIFILG  148 (203)
T ss_dssp             CCHHHHHHHHHHGGGSCHHHHTTEEECC
T ss_pred             CcHHHHHHHHHHHhhcCHHHhhceeecC
Confidence            9999999999999999999999999874