Psyllid ID: psy2072

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290----
Protein Sequence
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Secondary Structure (PSIPRED)
ccccccccHHHHccHHHHcHHHHHHHHHHHcccccHHHHHHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccEEEEcccEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHccccccHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccHHHcccccccccEEEEEEEEEcHHHHHHHHHcccHHHHHHHcHHHccHcccccccccccHHHHHHHHHHHHccccEEEEEcHHHHHEEccc
Coil and Loop (DISEMBL)
MSLHPIVIETLMSGDELRTDLVSLESQMatlgsdnivcvltttscfaprvadnlDPIAALCqryniphvinnayglQSTRLMKLIQEAARPNEAKKAADDAKMRFahidgdhlTLLNVYHAFkqnqedpqwcydnfvnyrslksaDNVRQQLSRIMDrfnlkrssteftskdyYINIRKSLVTGFFMQLIIVLAypisslptvsldqedpqwcydnfvnyrslksaDNVRQQLSRIMDrfnlkrssteftskdyYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Flexible Loop (DISEMBL)
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLsrimdrfnlkrssteftskdyyiNIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLsrimdrfnlkrssteftskdyyiNIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Low Complexity Region (SEG)
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Disordered region (IsUnstruct)
*****IVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQ****************MRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIG*
Disordered Region (DISOPRED)
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAK***DDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Disordered Region (DISEMBL)
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAA**********DAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Disordered Region (DISPRO)
***HPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYINIRKSLVTGFFMQCLLGIIGF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	294	2.2.26 [Sep-21-2011]
O35286	795	Putative pre-mRNA-splicin	yes	N/A	0.656	0.242	0.495	3e-49
O43143	795	Putative pre-mRNA-splicin	yes	N/A	0.656	0.242	0.495	3e-49
Q5RAZ4	795	Putative pre-mRNA-splicin	yes	N/A	0.656	0.242	0.495	3e-49
Q20875	739	Putative pre-mRNA-splicin	yes	N/A	0.482	0.192	0.571	2e-45
O22899	729	Probable pre-mRNA-splicin	no	N/A	0.340	0.137	0.73	1e-41
O17438	455	Putative pre-mRNA-splicin	no	N/A	0.340	0.219	0.76	8e-41
Q54NJ4	727	Putative pre-mRNA-splicin	yes	N/A	0.340	0.137	0.58	2e-30
O42945	735	Probable pre-mRNA-splicin	yes	N/A	0.360	0.144	0.508	2e-29
P53131	767	Pre-mRNA-splicing factor	yes	N/A	0.340	0.130	0.557	4e-29
Q28EN2	506	O-phosphoseryl-tRNA(Sec)	no	N/A	0.302	0.175	0.550	5e-27

>sp|O35286|DHX15_MOUSE Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Mus musculus GN=Dhx15 PE=2 SV=2

 Score =  195 bits (496), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 138/236 (58%), Gaps = 43/236 (18%)

Query: 3   LHPIVIETLMSGDEL---------RTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADN 53
           + P   ETLM   EL           DL  L S MA    D  +  +   SC        
Sbjct: 528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASC-------- 579

Query: 54  LDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHL 113
                     YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHL
Sbjct: 580 ---------DYNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHL 625

Query: 114 TLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDY 173
           TLLNVYHAFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DY
Sbjct: 626 TLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDY 685

Query: 174 YINIRKSLVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
           YINIRK+LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct: 686 YINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3

>sp|O43143|DHX15_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Homo sapiens GN=DHX15 PE=1 SV=2

 Score =  195 bits (496), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 138/236 (58%), Gaps = 43/236 (18%)

Query: 3   LHPIVIETLMSGDEL---------RTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADN 53
           + P   ETLM   EL           DL  L S MA    D  +  +   SC        
Sbjct: 528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASC-------- 579

Query: 54  LDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHL 113
                     YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHL
Sbjct: 580 ---------DYNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHL 625

Query: 114 TLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDY 173
           TLLNVYHAFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DY
Sbjct: 626 TLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDY 685

Query: 174 YINIRKSLVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
           YINIRK+LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct: 686 YINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5RAZ4|DHX15_PONAB Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 OS=Pongo abelii GN=DHX15 PE=2 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 117/236 (49%), Positives = 138/236 (58%), Gaps = 43/236 (18%)

Query: 3   LHPIVIETLMSGDEL---------RTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADN 53
           + P   ETLM   EL           DL  L S MA    D  +  +   SC        
Sbjct: 528 MDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASC-------- 579

Query: 54  LDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHL 113
                     YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHL
Sbjct: 580 ---------DYNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHL 625

Query: 114 TLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDY 173
           TLLNVYHAFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DY
Sbjct: 626 TLLNVYHAFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDY 685

Query: 174 YINIRKSLVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
           YINIRK+LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct: 686 YINIRKALVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q20875|DHX15_CAEEL Putative pre-mRNA-splicing factor ATP-dependent RNA helicase F56D2.6 OS=Caenorhabditis elegans GN=F56D2.6 PE=2 SV=1

 Score =  182 bits (462), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 88/154 (57%), Positives = 114/154 (74%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNE +  AD+AK RFAHIDGDHLTLLNVYH+FKQNQEDPQWCYDN
Sbjct: 532 LSITAMLSVPQCWVRPNEMRTEADEAKARFAHIDGDHLTLLNVYHSFKQNQEDPQWCYDN 591

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL------ 189
           F+NYR++K+AD VR QLSR+MD++NL+R ST+F S+DYY+NIRK+LV GFFMQ+      
Sbjct: 592 FINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERS 651

Query: 190 ---IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
              + V    + +L P+  LD + P+W  Y+ FV
Sbjct: 652 GHYVTVKDNQLVNLHPSTVLDHK-PEWALYNEFV 684

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O22899|DHX15_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At2g47250 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 88/100 (88%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVR 149
           RP EA+KAAD+AK RF HIDGDHLTLLNVYHA+KQN EDP WC++NFVN R++KSADNVR
Sbjct: 533 RPREAQKAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPNWCFENFVNNRAMKSADNVR 592

Query: 150 QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           QQL RIM RFNLK  ST+F S+DYY+NIRK+++ G+FMQ+
Sbjct: 593 QQLVRIMSRFNLKMCSTDFNSRDYYVNIRKAMLAGYFMQV 632

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O17438|DHX15_STRPU Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 (Fragment) OS=Strongylocentrotus purpuratus GN=PRP1 PE=2 SV=1

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 76/100 (76%), Positives = 86/100 (86%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNEAKK AD+AKMRFAHIDGDHLTLLNVYHAFKQN EDPQWCYDN
Sbjct: 356 LSVTAMLSVPQCFLRPNEAKKLADEAKMRFAHIDGDHLTLLNVYHAFKQNNEDPQWCYDN 415

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYI 175
           F+ YRSLKSAD+VRQQL+RIMDRF L+R+ST F SKDYY+
Sbjct: 416 FIQYRSLKSADSVRQQLARIMDRFALQRTSTNFNSKDYYL 455

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Strongylocentrotus purpuratus (taxid: 7668)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q54NJ4|DHX15_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase dhx15 OS=Dictyostelium discoideum GN=dhx15 PE=3 SV=1

 Score =  133 bits (334), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 74/100 (74%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVR 149
           RP + +  AD AK  F H DGDHLT+LNVYH+FK+N EDP WCYDNF+N+R++K AD+VR
Sbjct: 529 RPKDNRIEADSAKKSFDHFDGDHLTMLNVYHSFKKNGEDPTWCYDNFLNHRAIKQADSVR 588

Query: 150 QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
            QL+RI+ RF L   S +  SK YY NI+K +  GFFMQ+
Sbjct: 589 SQLARILTRFKLPLVSGDVNSKFYYENIKKCIAAGFFMQV 628

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|O42945|DHX15_SCHPO Probable pre-mRNA-splicing factor ATP-dependent RNA helicase prp43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=prp43 PE=3 SV=1

 Score =  129 bits (325), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/114 (50%), Positives = 83/114 (72%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T L+ +     RPN A+K AD+ + +F H DGDHLTLLNVYHA+K  +    WC+++
Sbjct: 525 LSLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGDHLTLLNVYHAYKSGEGTADWCWNH 584

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           F+++R+L SADNVR+QL R M+R  ++  ST F  K+YY+NIR++LV+GFFMQ+
Sbjct: 585 FLSHRALISADNVRKQLRRTMERQEVELISTPFDDKNYYVNIRRALVSGFFMQV 638

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|P53131|PRP43_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP43 PE=1 SV=1

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 4/104 (3%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDP----QWCYDNFVNYRSLKSA 145
           RP + KK ADDAK  FAH DGDH+TLLNVYHAFK ++       +WC D+++NYRSL +A
Sbjct: 557 RPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616

Query: 146 DNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           DN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ+
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQV 660

Pre-mRNA processing factor involved in disassembly of spliceosomes after the release of mature mRNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q28EN2|SPCS_XENTR O-phosphoseryl-tRNA(Sec) selenium transferase OS=Xenopus tropicalis GN=sepsecs PE=2 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 72/89 (80%)

Query: 2   SLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALC 61
              P+VIE ++ GDELRTDL ++E+++  LG++NI+CV +TTSCFAPRV D ++ +A +C
Sbjct: 183 GFEPVVIENVLEGDELRTDLDAVEAKITELGAENILCVHSTTSCFAPRVPDRVEELAVIC 242

Query: 62  QRYNIPHVINNAYGLQSTRLMKLIQEAAR 90
           ++Y IPHV+NNAYG+QS++ M LIQ+ AR
Sbjct: 243 KKYEIPHVVNNAYGVQSSKCMHLIQQGAR 271

Converts O-phosphoseryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 9

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
91077430	716	PREDICTED: similar to ATP-dependent RNA	0.482	0.198	0.688	3e-51
242010317	723	ATP-dependent RNA helicase, putative [Pe	0.482	0.196	0.681	5e-51
291228066	611	PREDICTED: CG11107-like [Saccoglossus ko	0.680	0.327	0.537	5e-51
346468145	731	hypothetical protein [Amblyomma maculatu	0.656	0.264	0.516	1e-50
427788877	729	Putative mrna splicing factor atp-depend	0.656	0.264	0.516	2e-50
321466112	733	hypothetical protein DAPPUDRAFT_198525 [	0.680	0.272	0.524	3e-50
193647974	716	PREDICTED: putative pre-mRNA-splicing fa	0.363	0.149	0.807	6e-50
380024559	1039	PREDICTED: putative pre-mRNA-splicing fa	0.482	0.136	0.681	6e-50
328780322	1039	PREDICTED: putative pre-mRNA-splicing fa	0.482	0.136	0.681	6e-50
383866382	1039	PREDICTED: putative pre-mRNA-splicing fa	0.482	0.136	0.668	1e-49

>gi|91077430|ref|XP_966364.1| PREDICTED: similar to ATP-dependent RNA helicase [Tribolium castaneum] gi|270001627|gb|EEZ98074.1| hypothetical protein TcasGA2_TC000481 [Tribolium castaneum]

 Score =  207 bits (528), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 106/154 (68%), Positives = 118/154 (76%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQ+ EDPQWCYDN
Sbjct: 508 LSITAMLSVPQCFIRPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQSMEDPQWCYDN 567

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ------- 188
           FVNYRSLKSADNVRQQLSRIMDRFNLKR+ST+FTSKDYYINIRK+LV GFFMQ       
Sbjct: 568 FVNYRSLKSADNVRQQLSRIMDRFNLKRTSTDFTSKDYYINIRKALVNGFFMQVAHLERT 627

Query: 189 ---LIIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
              L I     +   P+  LD + P+W  Y+ FV
Sbjct: 628 GHYLTIKDNQNVQLHPSTCLDHK-PEWVIYNEFV 660

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010317|ref|XP_002425915.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis] gi|212509891|gb|EEB13177.1| ATP-dependent RNA helicase, putative [Pediculus humanus corporis]

 Score =  207 bits (527), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 115/154 (74%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNEA+KAADDAKMRFAHIDGDHLTLLNVYHAFKQN EDPQWCYDN
Sbjct: 515 LSITAMLSVPQCFVRPNEARKAADDAKMRFAHIDGDHLTLLNVYHAFKQNMEDPQWCYDN 574

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ------- 188
           FVNYRSLKS DNVRQQLSRIMDRF LKR+STEFTSKDYYINIRK+LV GFFMQ       
Sbjct: 575 FVNYRSLKSGDNVRQQLSRIMDRFELKRTSTEFTSKDYYINIRKALVAGFFMQVAHLEKT 634

Query: 189 ---LIIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
              L I     +   P+  LD   P+W  Y+ FV
Sbjct: 635 GHYLTIKDNQVVQLHPSTCLDHR-PEWVIYNEFV 667

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291228066|ref|XP_002734003.1| PREDICTED: CG11107-like [Saccoglossus kowalevskii]

 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 123/229 (53%), Positives = 149/229 (65%), Gaps = 29/229 (12%)

Query: 3   LHPIVIETLMSGDELRTDLVSLE--SQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
           + P   ETLM   EL   L +L+   ++  LGS      +       P++A     + A 
Sbjct: 344 MDPPAPETLMRALELLNYLSALDDDGELTELGS------MMAEFPLDPQLAKM---VIAS 394

Query: 61  CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
           C+ YN  + I     L  T ++ + Q   RPNEAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct: 395 CE-YNCSNEI-----LSVTAMLSVPQCFMRPNEAKKAADEAKMRFAHIDGDHLTLLNVYH 448

Query: 121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
           AFKQN ED QWCYDNFV YRSLKSADNVRQQL+RIMDRFNLKR+STEFTSKDYY+NIRK+
Sbjct: 449 AFKQNNEDAQWCYDNFVQYRSLKSADNVRQQLARIMDRFNLKRTSTEFTSKDYYLNIRKA 508

Query: 181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
           LV+GFFMQ+         + V    I  L P+  LD + P+W  Y+ FV
Sbjct: 509 LVSGFFMQVAHLERTGHYLTVKDNQIVQLHPSTCLDHK-PEWVLYNEFV 556

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|346468145|gb|AEO33917.1| hypothetical protein [Amblyomma maculatum]

 Score =  206 bits (524), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 142/236 (60%), Gaps = 43/236 (18%)

Query: 3   LHPIVIETLMSGDEL---------RTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADN 53
           + P   ETLM   EL           +L  L S MA    D  +  +  TSC        
Sbjct: 463 MDPPAPETLMRALELLNYLQALDDNGELTELGSIMAEFPLDPQLAKMLITSC-------- 514

Query: 54  LDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHL 113
                     YN     N A  L  T ++ + Q   RPNEAKKAAD++KMRFAHIDGDHL
Sbjct: 515 ---------EYNCS---NEA--LSITAMLSVPQCFVRPNEAKKAADESKMRFAHIDGDHL 560

Query: 114 TLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDY 173
           TLLNVYHAFKQN ED QWCYDNF+NYRS+KSADNVRQQLSRIMDRFNL+R+STEFTSKDY
Sbjct: 561 TLLNVYHAFKQNHEDTQWCYDNFINYRSMKSADNVRQQLSRIMDRFNLRRTSTEFTSKDY 620

Query: 174 YINIRKSLVTGFFMQ----------LIIVLAYPISSLPTVSLDQEDPQW-CYDNFV 218
           YINIRK+LV+GFFMQ          L I     +   P+  LD + P+W  Y+ FV
Sbjct: 621 YINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHK-PEWVVYNEFV 675

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427788877|gb|JAA59890.1| Putative mrna splicing factor atp-dependent rna helicase [Rhipicephalus pulchellus]

 Score =  205 bits (521), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/236 (51%), Positives = 142/236 (60%), Gaps = 43/236 (18%)

Query: 3   LHPIVIETLMSGDEL---------RTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADN 53
           + P   ETLM   EL           +L  L S MA    D  +  +  TSC        
Sbjct: 461 MDPPAPETLMRALELLNYLQSLDDNGELTELGSIMAEFPLDPQLAKMLITSC-------- 512

Query: 54  LDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHL 113
                     YN     N A  L  T ++ + Q   RPNEAKKAAD++KMRFAHIDGDHL
Sbjct: 513 ---------DYNCS---NEA--LSITAMLSVPQCFVRPNEAKKAADESKMRFAHIDGDHL 558

Query: 114 TLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDY 173
           TLLNVYHAFKQN ED QWCYDNF+NYRS+KSADNVRQQLSRIMDRFNL+R+STEFTSKDY
Sbjct: 559 TLLNVYHAFKQNHEDTQWCYDNFINYRSMKSADNVRQQLSRIMDRFNLRRTSTEFTSKDY 618

Query: 174 YINIRKSLVTGFFMQ----------LIIVLAYPISSLPTVSLDQEDPQW-CYDNFV 218
           YINIRK+LV+GFFMQ          L I     +   P+  LD + P+W  Y+ FV
Sbjct: 619 YINIRKTLVSGFFMQVAHLERTGHYLTIKDNQVVQLHPSTCLDHK-PEWVVYNEFV 673

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321466112|gb|EFX77109.1| hypothetical protein DAPPUDRAFT_198525 [Daphnia pulex]

 Score =  204 bits (520), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 120/229 (52%), Positives = 147/229 (64%), Gaps = 29/229 (12%)

Query: 3   LHPIVIETLMSGDELRTDLVSLE--SQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
           + P   ETLM   EL   L +L+    M  LG+      +       P++A  L  IA+ 
Sbjct: 467 MDPPAPETLMRALELLNYLGALDDDGNMTELGA------IMAEFPLDPQLAKML--IAS- 517

Query: 61  CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
              +N  + I     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLT+LNVYH
Sbjct: 518 -TEFNCSNEI-----LSITAMLSVPQVFMRPLEAKKAADEAKMRFAHIDGDHLTMLNVYH 571

Query: 121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
           AFKQN EDPQWCYDNFVNYRS+KSADNVRQQLSRIMDRFNLKR+STEFTSKDYY+NIRK+
Sbjct: 572 AFKQNMEDPQWCYDNFVNYRSMKSADNVRQQLSRIMDRFNLKRTSTEFTSKDYYVNIRKA 631

Query: 181 LVTGFFMQL----------IIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
           L++GFFMQ+           I     +   P+  LD + P+W  Y+ FV
Sbjct: 632 LISGFFMQVAHLERTGHYQTIKDNQVVQLHPSTCLDHK-PEWVIYNEFV 679

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193647974|ref|XP_001945171.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Acyrthosiphon pisum]

 Score =  204 bits (518), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/114 (80%), Positives = 103/114 (90%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RP+EAKKA+DD+KMRFAHIDGDHLTLLN+YHAFKQN EDPQWCYDN
Sbjct: 508 LSITAMLSVPQCFVRPSEAKKASDDSKMRFAHIDGDHLTLLNIYHAFKQNNEDPQWCYDN 567

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           F+NYRSLKS DNVRQQLSRIMDRFNLKR+STEFTSKDYY+NIRKSL TGFFMQ+
Sbjct: 568 FINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSKDYYLNIRKSLTTGFFMQV 621

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380024559|ref|XP_003696062.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Apis florea]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 116/154 (75%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNE+KKAADDAKMRFAHIDGDHLTLLNVYHAFKQN EDPQWCYDN
Sbjct: 831 LSITAMLSVPQCFVRPNESKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNFEDPQWCYDN 890

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ------- 188
           FVNYRSLKS DNVRQQLSRIMDRF LKR+STEFTSKDYYINIRK+LV GFFMQ       
Sbjct: 891 FVNYRSLKSGDNVRQQLSRIMDRFCLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERT 950

Query: 189 ---LIIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
              L I     +   P+  LD + P+W  Y+ FV
Sbjct: 951 GHYLTIKDNQIVQLHPSSCLDHK-PEWVIYNEFV 983

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780322|ref|XP_003249784.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Apis mellifera]

 Score =  203 bits (517), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/154 (68%), Positives = 116/154 (75%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNE+KKAADDAKMRFAHIDGDHLTLLNVYHAFKQN EDPQWCYDN
Sbjct: 831 LSITAMLSVPQCFVRPNESKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNFEDPQWCYDN 890

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ------- 188
           FVNYRSLKS DNVRQQLSRIMDRF LKR+STEFTSKDYYINIRK+LV GFFMQ       
Sbjct: 891 FVNYRSLKSGDNVRQQLSRIMDRFCLKRTSTEFTSKDYYINIRKALVNGFFMQVAHLERT 950

Query: 189 ---LIIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
              L I     +   P+  LD + P+W  Y+ FV
Sbjct: 951 GHYLTIKDNQIVQLHPSSCLDHK-PEWVIYNEFV 983

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866382|ref|XP_003708649.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like [Megachile rotundata]

 Score =  202 bits (514), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 103/154 (66%), Positives = 117/154 (75%), Gaps = 12/154 (7%)

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
           L  T ++ + Q   RPNE+KKAADDAKMRFAHIDGDHLTLLNVYHAFKQN EDPQWCYDN
Sbjct: 831 LSITAMLSVPQCFVRPNESKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNFEDPQWCYDN 890

Query: 136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ------- 188
           FVNYRSLKS DNVR+QLSRIMDRF+LKR+ST+FTSKDYYINIRK+LV GFFMQ       
Sbjct: 891 FVNYRSLKSGDNVREQLSRIMDRFHLKRTSTDFTSKDYYINIRKALVNGFFMQVAHLERT 950

Query: 189 ---LIIVLAYPISSLPTVSLDQEDPQWC-YDNFV 218
              L I     +   P+  LD + P+W  Y+ FV
Sbjct: 951 GHYLTIKDNQIVQLHPSSCLDHK-PEWVIYNEFV 983

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	294
FB|FBgn0033160	729	CG11107 [Drosophila melanogast	0.687	0.277	0.519	5.9e-47
UNIPROTKB|F1NHI3	762	DHX15 "Uncharacterized protein	0.680	0.262	0.510	1.2e-45
UNIPROTKB|A5D7D9	795	DHX15 "Uncharacterized protein	0.680	0.251	0.510	1.6e-45
UNIPROTKB|E2R2U3	795	DHX15 "Uncharacterized protein	0.680	0.251	0.510	1.6e-45
UNIPROTKB|O43143	795	DHX15 "Putative pre-mRNA-splic	0.680	0.251	0.510	1.6e-45
UNIPROTKB|F1S5A8	795	DHX15 "Uncharacterized protein	0.680	0.251	0.510	1.6e-45
MGI|MGI:1099786	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.680	0.251	0.510	1.6e-45
RGD|1308072	795	Dhx15 "DEAH (Asp-Glu-Ala-His)	0.680	0.251	0.510	1.6e-45
ZFIN|ZDB-GENE-030131-650	769	dhx15 "DEAH (Asp-Glu-Ala-His)	0.680	0.260	0.506	3.6e-45
WB|WBGene00018967	739	F56D2.6 [Caenorhabditis elegan	0.482	0.192	0.571	2.1e-43

FB|FBgn0033160 CG11107 [Drosophila melanogaster (taxid:7227)]

 Score = 494 (179.0 bits), Expect = 5.9e-47, P = 5.9e-47
 Identities = 118/227 (51%), Positives = 149/227 (65%)

Query:     3 LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             + P   ETLM   EL   L +L+      G+   +  + +     P++A  L  IA+ CQ
Sbjct:   461 MDPPAPETLMRALELLNYLAALDDD----GNLTDLGAVMSEFPLDPQLAKML--IAS-CQ 513

Query:    63 RYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAF 122
                  H  +N   L  T ++ + Q   RPNEAKKAAD+AKMRFAHIDGDHLTLLNVYHAF
Sbjct:   514 -----HNCSNEI-LSITAMLSVPQCFVRPNEAKKAADEAKMRFAHIDGDHLTLLNVYHAF 567

Query:   123 KQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLV 182
             KQ+ EDP WCY+NF+N+RSLKSADNVRQQL+RIMDRFNL+R+STEFTSKDYY+NIRK+LV
Sbjct:   568 KQSSEDPNWCYENFINFRSLKSADNVRQQLARIMDRFNLRRTSTEFTSKDYYVNIRKALV 627

Query:   183 TGFFMQLIIV--LAYPIS-------SL-PTVSLDQEDPQWC-YDNFV 218
              GFFMQ+  +    Y ++        L P+  LD + P W  Y+ FV
Sbjct:   628 QGFFMQVAHLERTGYYLTIKDNQNVQLHPSTCLDHK-PDWVIYNEFV 673

GO:0008026 "ATP-dependent helicase activity" evidence=ISS

GO:0003724 "RNA helicase activity" evidence=ISS

GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NHI3 DHX15 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 484 (175.4 bits), Expect = 1.2e-45, P = 1.2e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   495 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 545

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   546 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 599

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   600 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 659

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   660 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 707

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

UNIPROTKB|A5D7D9 DHX15 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R2U3 DHX15 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|O43143 DHX15 "Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15" [Homo sapiens (taxid:9606)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003724 "RNA helicase activity" evidence=TAS

GO:0008380 "RNA splicing" evidence=IC

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1S5A8 DHX15 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1099786 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Mus musculus (taxid:10090)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

RGD|1308072 Dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Rattus norvegicus (taxid:10116)]

 Score = 484 (175.4 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 117/229 (51%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   528 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 578

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  YN  + +     L  T ++ + Q   RP EAKKAAD+AKMRFAHIDGDHLTLLNVYH
Sbjct:   579 CD-YNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYH 632

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R ST+FTS+DYYINIRK+
Sbjct:   633 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKA 692

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTG+FMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   693 LVTGYFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 740

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

ZFIN|ZDB-GENE-030131-650 dhx15 "DEAH (Asp-Glu-Ala-His) box polypeptide 15" [Danio rerio (taxid:7955)]

 Score = 480 (174.0 bits), Expect = 3.6e-45, P = 3.6e-45
 Identities = 116/229 (50%), Positives = 143/229 (62%)

Query:     3 LHPIVIETLMSGDELRTDLVSL--ESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAAL 60
             + P   ETLM   EL   L +L  +  +  LGS      +       P++A     + A 
Sbjct:   502 MDPPAPETLMRALELLNYLAALNDDGDLTELGS------MMAEFPLDPQLAKM---VIAS 552

Query:    61 CQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYH 120
             C  +N  + +     L  T ++ + Q   RP EAKKAAD++KMRFAHIDGDHLTLLNVYH
Sbjct:   553 CD-FNCSNEV-----LSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH 606

Query:   121 AFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKS 180
             AFKQN E  QWCYDNF+NYRSL SADNVRQQLSRIMDRFNL R STEFTS+DYYINIR++
Sbjct:   607 AFKQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRA 666

Query:   181 LVTGFFMQL---------IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
             LVTGFFMQ+         + V    +  L P+  LD + P+W  Y+ FV
Sbjct:   667 LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHK-PEWVLYNEFV 714

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00018967 F56D2.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 448 (162.8 bits), Expect = 2.1e-43, Sum P(2) = 2.1e-43
 Identities = 88/154 (57%), Positives = 114/154 (74%)

Query:    76 LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDN 135
             L  T ++ + Q   RPNE +  AD+AK RFAHIDGDHLTLLNVYH+FKQNQEDPQWCYDN
Sbjct:   532 LSITAMLSVPQCWVRPNEMRTEADEAKARFAHIDGDHLTLLNVYHSFKQNQEDPQWCYDN 591

Query:   136 FVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL------ 189
             F+NYR++K+AD VR QLSR+MD++NL+R ST+F S+DYY+NIRK+LV GFFMQ+      
Sbjct:   592 FINYRTMKTADTVRTQLSRVMDKYNLRRVSTDFKSRDYYLNIRKALVAGFFMQVAHLERS 651

Query:   190 ---IIVLAYPISSL-PTVSLDQEDPQWC-YDNFV 218
                + V    + +L P+  LD + P+W  Y+ FV
Sbjct:   652 GHYVTVKDNQLVNLHPSTVLDHK-PEWALYNEFV 684

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0040020 "regulation of meiosis" evidence=IMP

GO:0040022 "feminization of hermaphroditic germ-line" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q20875	DHX15_CAEEL	3, ., 6, ., 4, ., 1, 3	0.5714	0.4829	0.1921	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.9.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	294
TIGR03531	444	TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec)	5e-38
pfam05889	386	pfam05889, SLA_LP_auto_ag, Soluble liver antigen/l	2e-26
COG1643	845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	6e-13
PRK11131	1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	7e-06
TIGR01967	1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	7e-06
pfam07717	109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	3e-04
pfam07717	109	pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch	5e-04
PRK13238	460	PRK13238, tnaA, tryptophanase/L-cysteine desulfhyd	6e-04
pfam04408	91	pfam04408, HA2, Helicase associated domain (HA2)	6e-04
COG1643	845	COG1643, HrpA, HrpA-like helicases [DNA replicatio	0.002

>gnl|CDD|211833 TIGR03531, selenium_SpcS, O-phosphoseryl-tRNA(Sec) selenium transferase

 Score =  139 bits (351), Expect = 5e-38
 Identities = 47/88 (53%), Positives = 66/88 (75%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P VIET++ GDEL TD+  +E  +  +G DNI+CVL+TTSCFAPR  D+++ IA +C 
Sbjct: 173 FEPRVIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICA 232

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
            Y+IPH++NNAYGLQS + M+LI +A +
Sbjct: 233 NYDIPHIVNNAYGLQSNKYMELINKAIK 260

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein [Protein synthesis, tRNA aminoacylation]. Length = 444

>gnl|CDD|218796 pfam05889, SLA_LP_auto_ag, Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

 Score =  106 bits (266), Expect = 2e-26
 Identities = 39/88 (44%), Positives = 61/88 (69%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P ++ET++ GD L TD+  +E+ +   G + I+ VL+TTSCFAPR  D +  IA +C 
Sbjct: 123 FEPRLVETVLEGDYLITDVNDVETIIEEKGEEVILAVLSTTSCFAPRSPDRVKEIAKICA 182

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
            Y++PH++N AYG+QS + + LIQ+AA+
Sbjct: 183 EYDVPHLVNGAYGIQSEKYIHLIQQAAK 210

This family consists of several eukaryotic and archaeal proteins which are related to the human soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen). Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway. The archaeal sequences Methanopyrus kandleri spcS and MK0229 are annotated as being pyridoxal phosphate-dependent enzymes. Length = 386

>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]

 Score = 68.5 bits (168), Expect = 6e-13
 Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 25/155 (16%)

Query: 86  QEAARPNEAKKAADDAKMRFA-HIDGDHLTLLNVYHAFKQNQEDP------QWCYDNFVN 138
            +  +   A+      K R A    GDHL LL  +      +           C      
Sbjct: 506 VKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFP 565

Query: 139 YRSLKSADNVRQQLSRIMDR-FNLKRSSTEF--------------TSKDYYINIRKSLVT 183
            ++L  A  +   L            ++ E                S+  + +IR +L  
Sbjct: 566 TKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAA 625

Query: 184 GFFMQLIIVLAYPISSLPTVSLDQEDPQWCYDNFV 218
           G  +    +    +   P V+L    P + + + V
Sbjct: 626 GRKLN---IAQLQLDGRPYVTLSDNTPVFAHPSSV 657

Length = 845

>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 22/101 (21%), Positives = 50/101 (49%), Gaps = 10/101 (9%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQED------PQWCYDNFVNYRSLK 143
           RP + ++A+D+   RFA  + D L  +N+++  ++ Q+        + C  +++NY  ++
Sbjct: 529 RPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVR 588

Query: 144 SADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTG 184
              ++  QL +++    +  +S        Y  I  +L+TG
Sbjct: 589 EWQDIYTQLRQVVKELGIPVNSEPAE----YREIHTALLTG 625

Length = 1294

>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA

 Score = 47.1 bits (112), Expect = 7e-06
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 10/106 (9%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQED------PQWCYDNFVNYRSLK 143
           RP E ++AAD A  RF     D L+ +N++   ++ ++          C   ++NY  ++
Sbjct: 520 RPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVR 579

Query: 144 SADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
              ++ +QL++++    LK +       DY   I K+L++G   Q+
Sbjct: 580 EWQDIYRQLTQVVKELGLKLNE---EPADYDA-IHKALLSGLLSQI 621

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283

>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 150 QQLSRIMDRFNLK--RSSTEFTSKDYYINIRKSLVTGFFMQL 189
           +QL  I++R  L    SS   +S + Y  IRK+L  G F  +
Sbjct: 1   KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPNV 42

This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109

>gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 231 QQLSRIMDRFNLK--RSSTEFTSKDYYINIRKSLVTGFFMQ 269
           +QL  I++R  L    SS   +S + Y  IRK+L  G F  
Sbjct: 1   KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPN 41

This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109

>gnl|CDD|237314 PRK13238, tnaA, tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 10/65 (15%)

Query: 20  DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIPHVIN---- 71
           DL  LE+ +  +G++N+  ++ T +  +    P    NL  +  + ++Y IP VI+    
Sbjct: 162 DLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARF 221

Query: 72  --NAY 74
             NAY
Sbjct: 222 AENAY 226

Length = 460

>gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2)

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 14/27 (51%), Positives = 19/27 (70%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLL 116
           RP E ++ AD A+ +FA  + DHLTLL
Sbjct: 65  RPKEKEEEADAARRKFASAESDHLTLL 91

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91

>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair]

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 10/84 (11%), Positives = 22/84 (26%), Gaps = 15/84 (17%)

Query: 211 QWCYDNFVNYRSLKSADNVRQQLSRIMDR-FNLKRSSTEF--------------TSKDYY 255
             C       ++L  A  +   L            ++ E                S+  +
Sbjct: 557 NGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIW 616

Query: 256 INIRKSLVTGFFMQDYYINIRKSL 279
            +IR +L  G  +    + +    
Sbjct: 617 DDIRGALAAGRKLNIAQLQLDGRP 640

Length = 845

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	294
KOG0925|consensus	699		100.0
KOG0924|consensus	1042		100.0
KOG0922|consensus	674		100.0
KOG0923|consensus	902		100.0
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	100.0
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	99.96
KOG0920|consensus	924		99.93
KOG0925|consensus	699		99.85
KOG0926|consensus	1172		99.85
KOG0924|consensus	1042		99.83
KOG0922|consensus	674		99.83
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	99.81
PF04408	102	HA2: Helicase associated domain (HA2); InterPro: I	99.68
smart00847	92	HA2 Helicase associated domain (HA2) Add an annota	99.59
KOG0923|consensus	902		99.52
PRK11131	1294	ATP-dependent RNA helicase HrpA; Provisional	99.38
KOG0921|consensus	1282		99.13
PRK11664	812	ATP-dependent RNA helicase HrpB; Provisional	98.98
TIGR01967	1283	DEAH_box_HrpA ATP-dependent helicase HrpA. This mo	98.98
TIGR01970	819	DEAH_box_HrpB ATP-dependent helicase HrpB. This mo	98.94
PF07717	114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	98.81
PF07717	114	OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi	98.17
KOG0920|consensus	924		97.56
COG1643	845	HrpA HrpA-like helicases [DNA replication, recombi	97.52
KOG3843|consensus	432		97.32
KOG0926|consensus	1172		96.86
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	96.86
PHA02653	675	RNA helicase NPH-II; Provisional	92.43
PRK01172	674	ski2-like helicase; Provisional	89.22

>KOG0925|consensus

Probab=100.00  E-value=4.8e-42  Score=319.69  Aligned_cols=209  Identities=49%  Similarity=0.790  Sum_probs=191.8

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA   73 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~   73 (294)
                      +|||.++++++|++.|.         +||++|..|++||+||.++|||+.|+.|+|+.| +++|+|              
T Consensus       427 mDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnE-iLsisA--------------  491 (699)
T KOG0925|consen  427 MDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNE-ILSISA--------------  491 (699)
T ss_pred             CCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHH-HHHHHh--------------
Confidence            79999999999999997         899999999999999999999999999999999 999999              


Q ss_pred             hhhhhHhhhhccccccCCh-hHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072          74 YGLQSTRLMKLIQEAARPN-EAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL  152 (294)
Q Consensus        74 ~~~~~~~~ls~~~~f~~~~-~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL  152 (294)
                             |||+.+.|++|. +.+++++.+++.|+|++|||+|++|||++|++++...+||++++||+++|.+|.++|+||
T Consensus       492 -------MLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL  564 (699)
T KOG0925|consen  492 -------MLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQL  564 (699)
T ss_pred             -------cccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHH
Confidence                   999999999987 888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCcccc-ccccccc-
Q psy2072         153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQWC-YDNFVNY-  220 (294)
Q Consensus       153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~WC-~~~~ln~-  220 (294)
                      .++|.+++++..+.+|++.+.+.+|+||+++|||+|||+...          .-+.+||++++. ..++|+ +.+|+-. 
T Consensus       565 ~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhps~~l~-~~PeWVlyneFvlt~  643 (699)
T KOG0925|consen  565 LRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHPSTCLD-HKPEWVLYNEFVLTT  643 (699)
T ss_pred             HHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEeccccccC-CCCCeEEEeeEEeec
Confidence            999999999999999999999999999999999999999863          235799999986 578997 6666522 


Q ss_pred             c-ccccHHHHHHHHH
Q psy2072         221 R-SLKSADNVRQQLS  234 (294)
Q Consensus       221 r-~L~~a~~ir~QL~  234 (294)
                      + -++.+.+||-+..
T Consensus       644 ~N~ir~vt~I~pewl  658 (699)
T KOG0925|consen  644 KNFIRTVTDIRPEWL  658 (699)
T ss_pred             cceeeeecccCHHHH
Confidence            2 2456667777754

>KOG0924|consensus

Probab=100.00  E-value=1.7e-38  Score=305.06  Aligned_cols=184  Identities=24%  Similarity=0.402  Sum_probs=174.1

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA   73 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~   73 (294)
                      +||||.+.+..|+..|.         .||++|+.|++||+||.++||||.|+.+||++| +++|++              
T Consensus       737 mD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dE-ilsIvS--------------  801 (1042)
T KOG0924|consen  737 MDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDE-ILSIVS--------------  801 (1042)
T ss_pred             CCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHH-HHHHHH--------------
Confidence            69999999999999998         899999999999999999999999999999999 999999              


Q ss_pred             hhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHHH
Q psy2072          74 YGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLS  153 (294)
Q Consensus        74 ~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL~  153 (294)
                             |||+..+|.+|++.+++++.++.+|.+++|||||+||||++|.+++++..||.+++|+.++|..|.++|.||.
T Consensus       802 -------mLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~  874 (1042)
T KOG0924|consen  802 -------MLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLL  874 (1042)
T ss_pred             -------HhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCC-Ccccc
Q psy2072         154 RIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQE-DPQWC  213 (294)
Q Consensus       154 ~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~-~~~WC  213 (294)
                      .++++.++++.++     .++..|++|+|+|||.|+|++.+          .|+.+||+|.+++. .|.++
T Consensus       875 ~il~~l~~~l~S~-----~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~tg~~c~lHPsS~L~g~y~p~Yi  940 (1042)
T KOG0924|consen  875 EILKQLKLPLISS-----DDWDIVRKCICSAYFHNAARLKGIGEYVNLSTGIPCHLHPSSVLHGLYTPDYI  940 (1042)
T ss_pred             HHHHHcCCCcccC-----chHHHHHHHHHHHHHHHHHHhccCceEEEccCCcceeecchHhhhcCCCCCee
Confidence            9999999998875     37999999999999999999874          46789999999876 44443

>KOG0922|consensus

Probab=100.00  E-value=3.3e-37  Score=297.37  Aligned_cols=186  Identities=35%  Similarity=0.531  Sum_probs=174.5

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccH-HHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVS-LESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN   72 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~-lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~   72 (294)
                      +|||+.+++..|++.|+         .||. +|++|+++|++|.++|||+.|..+||.++ +++|+|             
T Consensus       429 ~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e-~l~i~a-------------  494 (674)
T KOG0922|consen  429 IDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEE-ILTIAA-------------  494 (674)
T ss_pred             CCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcch-hhhhee-------------
Confidence            78999999999999999         7887 99999999999999999999999999999 999999             


Q ss_pred             hhhhhhHhhhhccccccCChhHHHH-HHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHH
Q psy2072          73 AYGLQSTRLMKLIQEAARPNEAKKA-ADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQ  151 (294)
Q Consensus        73 ~~~~~~~~~ls~~~~f~~~~~~~~~-~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~Q  151 (294)
                              |||++++|.+|.+++.. ++..+.+|.+++|||+|++++|+.|.+++.+++||.+|+|++++|+.+.+||+|
T Consensus       495 --------~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~Q  566 (674)
T KOG0922|consen  495 --------MLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQ  566 (674)
T ss_pred             --------eeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHH
Confidence                    99999999999888877 999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHh----------hcccccCCCccCCCCCccccc
Q psy2072         152 LSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVL----------AYPISSLPTVSLDQEDPQWCY  214 (294)
Q Consensus       152 L~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~----------~~p~~iHPsS~l~~~~~~WC~  214 (294)
                      |.+++++++++..++.    .+...|++|+++|||.|+|++.          +.+++|||||+++...++|.-
T Consensus       567 L~~i~~~~~~~~~s~~----~d~~~i~k~l~aGff~N~A~~~~~~~Yrti~~~~~v~IHPSS~l~~~~p~~vi  635 (674)
T KOG0922|consen  567 LRRILDKFGLPVSSCG----GDMEKIRKCLCAGFFRNVAERDYQDGYRTIRGGQPVYIHPSSVLFRRKPEWVI  635 (674)
T ss_pred             HHHHHHHcCCCccCCC----CCHHHHHHHHHHHHHHHHHHhhcCCCeEEccCCcEEEEechHHhhcCCCCEEE
Confidence            9999999998876554    4568999999999999999997          246889999999998899973

>KOG0923|consensus

Probab=100.00  E-value=7.5e-35  Score=279.41  Aligned_cols=215  Identities=28%  Similarity=0.464  Sum_probs=187.4

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA   73 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~   73 (294)
                      |||||.++|..|++.|+         .||.+|++|++||+||+++|||+.|-.++|.++ +++|+|              
T Consensus       646 mDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~E-iitiaa--------------  710 (902)
T KOG0923|consen  646 LDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEE-IITIAA--------------  710 (902)
T ss_pred             CCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHH-HHHHHH--------------
Confidence            79999999999999999         899999999999999999999999999999999 999999              


Q ss_pred             hhhhhHhhhhcc-ccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072          74 YGLQSTRLMKLI-QEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL  152 (294)
Q Consensus        74 ~~~~~~~~ls~~-~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL  152 (294)
                             |+|+. ++|.+|+++...++.+++.|.++.|||+++++||+.|...+.+.+||.++++.+++|..+.+||.||
T Consensus       711 -------mlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL  783 (902)
T KOG0923|consen  711 -------MLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQL  783 (902)
T ss_pred             -------HHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHH
Confidence                   99997 6999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhc----------ccccCCCccCCCCCccccccccccccc
Q psy2072         153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAY----------PISSLPTVSLDQEDPQWCYDNFVNYRS  222 (294)
Q Consensus       153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~----------p~~iHPsS~l~~~~~~WC~~~~ln~r~  222 (294)
                      ..++.+.+....++    ..+...|++++.+|||+|+|++...          .+++||.|.++...|.|+.-+-+-   
T Consensus       784 ~gll~~v~~~~~s~----~~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~~tv~~hp~S~l~~~~P~wvvy~eLv---  856 (902)
T KOG0923|consen  784 EGLLERVEIDLSSN----QNDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHPQTVSIHPNSGLFEQLPRWVVYHELV---  856 (902)
T ss_pred             HHHhhhccccccCC----hHHHHHHHHHHhccccccceeccCCCcceeeccCcceeecCcccccccCCceEEEeehh---
Confidence            99999988776654    3478899999999999999998742          258999999999999997332221   


Q ss_pred             cccHHHHHHHHHHHHHHcCCCCCCC
Q psy2072         223 LKSADNVRQQLSRIMDRFNLKRSST  247 (294)
Q Consensus       223 L~~a~~ir~QL~~~~~~~~~~~~s~  247 (294)
                       -...++..|-..+=..|-+++.++
T Consensus       857 -~tske~mr~~~e~e~~Wlie~aph  880 (902)
T KOG0923|consen  857 -LTSKEFMRQVIEIEEEWLIEVAPH  880 (902)
T ss_pred             -cChHHHHHHHHhhhhhHHHHhchh
Confidence             233455555555544455555443

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=100.00  E-value=7.9e-33  Score=288.29  Aligned_cols=191  Identities=20%  Similarity=0.362  Sum_probs=172.1

Q ss_pred             CCCCCHHHHHHHHHHhh--------------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCc
Q psy2072           3 LHPIVIETLMSGDELRT--------------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPH   68 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~--------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~   68 (294)
                      ||||+.++|..|++.|+              +||++|+.|+.||+||++||||+.|..++|+++ +++|||         
T Consensus       450 ldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~e-vl~IaA---------  519 (1294)
T PRK11131        450 VEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVRE-VMIITS---------  519 (1294)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHH-HHHHHH---------
Confidence            79999999999999998              299999999999999999999999999999999 999999         


Q ss_pred             cccchhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC------CChhhHHhhccCHHHH
Q psy2072          69 VINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFVNYRSL  142 (294)
Q Consensus        69 ~~~~~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L~~~aL  142 (294)
                                  +||++++|.+|.+++++++.++++|.+++|||+|++|+|+.|.+..      ..++||++|+||+.+|
T Consensus       520 ------------~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l  587 (1294)
T PRK11131        520 ------------ALSIQDPRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRV  587 (1294)
T ss_pred             ------------HHcCCCcccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHH
Confidence                        9999999999999999999999999999999999999999997632      2368999999999999


Q ss_pred             HhHHHHHHHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCccc
Q psy2072         143 KSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQW  212 (294)
Q Consensus       143 ~~a~~Ir~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~W  212 (294)
                      +++.+++.||.+++++.+++..+.    ..++..|++|+++|||.|+|+...          .+++|||+|++++..++|
T Consensus       588 ~e~~~i~~QL~~~~~~~g~~~~~~----~~~~~~i~~all~G~~~nva~~~~~~~~y~~~~~~~~~ihP~S~L~~~~p~w  663 (1294)
T PRK11131        588 REWQDIYTQLRQVVKELGIPVNSE----PAEYREIHTALLTGLLSHIGMKDAEKQEYTGARNARFSIFPGSGLFKKPPKW  663 (1294)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCC----cccHHHHHHHHHhhcHHHHeeccCCCCeEEccCCcEEEEcCCccccCCCCCE
Confidence            999999999999999999876543    246789999999999999998752          246899999999999999


Q ss_pred             c-cccccc
Q psy2072         213 C-YDNFVN  219 (294)
Q Consensus       213 C-~~~~ln  219 (294)
                      + +.+.+.
T Consensus       664 vv~~Elv~  671 (1294)
T PRK11131        664 VMVAELVE  671 (1294)
T ss_pred             EEEEeeec
Confidence            8 444443

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=99.96  E-value=8.3e-29  Score=258.98  Aligned_cols=185  Identities=21%  Similarity=0.344  Sum_probs=166.5

Q ss_pred             CCCCCHHHHHHHHHHhh--------h----ccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccc
Q psy2072           3 LHPIVIETLMSGDELRT--------D----LVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVI   70 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~--------~----lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~   70 (294)
                      ||||+.+++..|++.|.        .    ||++|+.|+.||++|++||||+.|..++|.++ +++|||           
T Consensus       443 ldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e-~l~IaA-----------  510 (1283)
T TIGR01967       443 IEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQE-VLIIAS-----------  510 (1283)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHH-HHHHHH-----------
Confidence            79999999999999998        3    99999999999999999999999999999999 999999           


Q ss_pred             cchhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC------CChhhHHhhccCHHHHHh
Q psy2072          71 NNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFVNYRSLKS  144 (294)
Q Consensus        71 ~~~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L~~~aL~~  144 (294)
                                +||++++|.+|.++++++++++..|.+++|||++++|+|+.|.+..      ..++||.+|+||+.+|++
T Consensus       511 ----------~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~  580 (1283)
T TIGR01967       511 ----------ALSIQDPRERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVRE  580 (1283)
T ss_pred             ----------HHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHH
Confidence                      9999999999999999999999999999999999999999997642      236899999999999999


Q ss_pred             HHHHHHHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh---------cccccCCCccCCCCCcccc
Q psy2072         145 ADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA---------YPISSLPTVSLDQEDPQWC  213 (294)
Q Consensus       145 a~~Ir~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~---------~p~~iHPsS~l~~~~~~WC  213 (294)
                      +.++++||.+++++.++...+.    ..+...|.+++++||++|+|+...         ..+.|||+|.+++..++|+
T Consensus       581 ~~~i~~QL~~~~~~~~~~~~~~----~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~~g~~~~ihP~S~L~~~~p~wv  654 (1283)
T TIGR01967       581 WQDIYRQLTQVVKELGLKLNEE----PADYDAIHKALLSGLLSQIGMKDEKHEYDGARGRKFHIFPGSPLFKKPPKWV  654 (1283)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCC----CccHHHHHHHHHHhhHHHHheeCCCCcEEecCCcEEEECCCccccCCCCCEE
Confidence            9999999999999888765432    234567999999999999998642         2467999999998888998

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>KOG0920|consensus

Probab=99.93  E-value=1.5e-25  Score=226.34  Aligned_cols=184  Identities=20%  Similarity=0.258  Sum_probs=161.7

Q ss_pred             CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072           2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN   72 (294)
Q Consensus         2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~   72 (294)
                      +||||+.+++..|++.|.         +||++|+.++.+|+||++|||++.|..|+|+++ +++|||             
T Consensus       585 aldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp-~l~iaa-------------  650 (924)
T KOG0920|consen  585 ALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDP-ALTIAA-------------  650 (924)
T ss_pred             hcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccch-hhhHHH-------------
Confidence            689999999999999998         899999999999999999999999999999999 999999             


Q ss_pred             hhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCC-CCHhHHHHHHHHHHhcC-----CChhhHHhhccCHHHHHhHH
Q psy2072          73 AYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHID-GDHLTLLNVYHAFKQNQ-----EDPQWCYDNFVNYRSLKSAD  146 (294)
Q Consensus        73 ~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~-gDhlt~l~~~~~~~~~~-----~~~~~C~~~~L~~~aL~~a~  146 (294)
                              +|+..+||+.|.++++.++++++.|.... ||||+++++|..|....     ...+||++++|+..+|+++.
T Consensus       651 --------~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~  722 (924)
T KOG0920|consen  651 --------ALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEIS  722 (924)
T ss_pred             --------HhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHH
Confidence                    99999999999999999999999998665 99999999999998743     34699999999999999999


Q ss_pred             HHHHHHHHHHHHcCccCCCCC-------C-CChhhHHHHHHHHHhchhhhHHHHhh---------------cccccCCCc
Q psy2072         147 NVRQQLSRIMDRFNLKRSSTE-------F-TSKDYYINIRKSLVTGFFMQLIIVLA---------------YPISSLPTV  203 (294)
Q Consensus       147 ~Ir~QL~~~l~~~~l~~~s~~-------~-~d~~~~l~I~kal~aG~~~nvA~~~~---------------~p~~iHPsS  203 (294)
                      +++.|+.+.+.+.++...+..       . ....+...++..+|+|+|+|+++...               +.+.|||+|
T Consensus       723 ~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~~~~~v~i~~~s  802 (924)
T KOG0920|consen  723 SLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTKADGRVIIHPSS  802 (924)
T ss_pred             HHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecCCceeEEEecch
Confidence            999999999999988654321       1 11235667888899999999998763               235799999


Q ss_pred             cCCC
Q psy2072         204 SLDQ  207 (294)
Q Consensus       204 ~l~~  207 (294)
                      ++..
T Consensus       803 v~~~  806 (924)
T KOG0920|consen  803 VNEQ  806 (924)
T ss_pred             hhcc
Confidence            7654

>KOG0925|consensus

Probab=99.85  E-value=7.5e-22  Score=185.01  Aligned_cols=135  Identities=41%  Similarity=0.699  Sum_probs=115.5

Q ss_pred             hhhHHhhccCHHHHHhHHHHHH--------HHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccC
Q psy2072         129 PQWCYDNFVNYRSLKSADNVRQ--------QLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSL  200 (294)
Q Consensus       129 ~~~C~~~~L~~~aL~~a~~Ir~--------QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iH  200 (294)
                      .-.|..+.|++.+|+++-+.+-        ...+..+++.    .. .|||.++++|+.|+..                 
T Consensus       479 efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~fa----H~-dGDHlTLlnVYhAfkq-----------------  536 (699)
T KOG0925|consen  479 EFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFA----HI-DGDHLTLLNVYHAFKQ-----------------  536 (699)
T ss_pred             CCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhc----cC-CcchHHHHHHHHHHHh-----------------
Confidence            3579999999999999976522        2222333332    22 2789999999999965                 


Q ss_pred             CCccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HH
Q psy2072         201 PTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YI  273 (294)
Q Consensus       201 PsS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~  273 (294)
                           .+..++||++||+|||+|+.|.+||+||.++++|+.++..+..+.+.+.+.+|||||++||||++|       |.
T Consensus       537 -----~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Yl  611 (699)
T KOG0925|consen  537 -----NNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYL  611 (699)
T ss_pred             -----cCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceE
Confidence                 457889999999999999999999999999999999999999999999999999999999999998       67


Q ss_pred             HhcCCcEEEEecCCccc
Q psy2072         274 NIRKSLVTGFFMQCLLG  290 (294)
Q Consensus       274 ~~~~~~~v~ihPsS~l~  290 (294)
                      ++.++++|++||+++|.
T Consensus       612 t~kdnqvvqLhps~~l~  628 (699)
T KOG0925|consen  612 TVKDNQVVQLHPSTCLD  628 (699)
T ss_pred             EEecCceEEeccccccC
Confidence            88899999999999986

>KOG0926|consensus

Probab=99.85  E-value=9.6e-21  Score=185.71  Aligned_cols=192  Identities=16%  Similarity=0.231  Sum_probs=155.6

Q ss_pred             CCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchh
Q psy2072           4 HPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAY   74 (294)
Q Consensus         4 ~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~   74 (294)
                      +||...+|.+|++.|.         .||++|+.|+.||++|+++|||+.+.+.+|... .+.+++               
T Consensus       745 tpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy-~i~lvs---------------  808 (1172)
T KOG0926|consen  745 TPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPY-NIALVS---------------  808 (1172)
T ss_pred             CCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhH-HHHHHH---------------
Confidence            4899999999999997         799999999999999999999999999999999 888888               


Q ss_pred             hhhhHhhhhccccccC--------------ChhH------------------HHHHHHHhhhhccCCCCHhHHHHHHHHH
Q psy2072          75 GLQSTRLMKLIQEAAR--------------PNEA------------------KKAADDAKMRFAHIDGDHLTLLNVYHAF  122 (294)
Q Consensus        75 ~~~~~~~ls~~~~f~~--------------~~~~------------------~~~~~~~~~~f~~~~gDhlt~l~~~~~~  122 (294)
                            +||+..+|+.              |.++                  +.....++.+|...++|.++++.+..++
T Consensus       809 ------aLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~  882 (1172)
T KOG0926|consen  809 ------ALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAA  882 (1172)
T ss_pred             ------HHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence                  6776666542              1110                  0112335667888899999999999999


Q ss_pred             HhcCCChhhHHhhccCHHHHHhHHHHHHHHHHHHHHcCc-------cCCCCCCCChhhHHHHHHHHHhchhhhHHHHh--
Q psy2072         123 KQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNL-------KRSSTEFTSKDYYINIRKSLVTGFFMQLIIVL--  193 (294)
Q Consensus       123 ~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~~~~l-------~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~--  193 (294)
                      +..++...||..+||..++|.++.++|+||..+..+.+.       +..... +.......+++.+|+||.++||+..  
T Consensus       883 ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~p-pt~~q~~lLrQ~i~Ag~~DrVArk~~~  961 (1172)
T KOG0926|consen  883 EYAENGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKP-PTDTQAKLLRQMICAGFADRVARKVDA  961 (1172)
T ss_pred             HhhhhcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCC-CchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999888889999999999999999999999998874433       222211 2334556778889999999999964  


Q ss_pred             --------hcccccCCCccCCCCCcccc-ccccc
Q psy2072         194 --------AYPISSLPTVSLDQEDPQWC-YDNFV  218 (294)
Q Consensus       194 --------~~p~~iHPsS~l~~~~~~WC-~~~~l  218 (294)
                              ..|++||+.|++++..|+|+ +...+
T Consensus       962 ~~y~~~~i~~~~fl~~~svl~~~ape~viY~el~  995 (1172)
T KOG0926|consen  962 TEYDAAKIQEPVFLHRWSVLINSAPELVIYQELL  995 (1172)
T ss_pred             cccchhhhcCceeeeehhhhhccCccceehhhhh
Confidence                    25789999999999999997 55444

>KOG0924|consensus

Probab=99.83  E-value=1.2e-21  Score=189.51  Aligned_cols=134  Identities=19%  Similarity=0.329  Sum_probs=113.5

Q ss_pred             hhhHHhhccCHHHHHhHHHHHHHHHHHHHH-----cCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCc
Q psy2072         129 PQWCYDNFVNYRSLKSADNVRQQLSRIMDR-----FNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTV  203 (294)
Q Consensus       129 ~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~~-----~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS  203 (294)
                      .-.|.++.|++.+|+++..++-...+.-+.     .++..   ..+||.|++||+..|..                    
T Consensus       789 ~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~---~~sDhLTlLNVf~qw~~--------------------  845 (1042)
T KOG0924|consen  789 RMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQV---PESDHLTLLNVFNQWRK--------------------  845 (1042)
T ss_pred             ccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcC---CCCchhhHHHHHHHHHh--------------------
Confidence            468999999999999999886432222221     12221   23688999999999965                    


Q ss_pred             cCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhc
Q psy2072         204 SLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIR  276 (294)
Q Consensus       204 ~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~  276 (294)
                        .+++..||.+|+++.++|++|++||+||..+++.+++++.|+     ++++.|+||||+|||.|+|       |++++
T Consensus       846 --~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-----~dwdivrKCIcs~~fhn~Arlkg~g~YV~~~  918 (1042)
T KOG0924|consen  846 --NKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-----DDWDIVRKCICSAYFHNAARLKGIGEYVNLS  918 (1042)
T ss_pred             --cCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-----chHHHHHHHHHHHHHHHHHHhccCceEEEcc
Confidence              577889999999999999999999999999999999999885     4799999999999999999       67899


Q ss_pred             CCcEEEEecCCccccc
Q psy2072         277 KSLVTGFFMQCLLGII  292 (294)
Q Consensus       277 ~~~~v~ihPsS~l~~~  292 (294)
                      +|..+++||+|+|.+.
T Consensus       919 tg~~c~lHPsS~L~g~  934 (1042)
T KOG0924|consen  919 TGIPCHLHPSSVLHGL  934 (1042)
T ss_pred             CCcceeecchHhhhcC
Confidence            9999999999999887

>KOG0922|consensus

Probab=99.83  E-value=1.2e-21  Score=189.96  Aligned_cols=136  Identities=27%  Similarity=0.381  Sum_probs=111.0

Q ss_pred             CChhhHHhhccCHHHHHhHHHHHHHHHHHHH------HcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccC
Q psy2072         127 EDPQWCYDNFVNYRSLKSADNVRQQLSRIMD------RFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSL  200 (294)
Q Consensus       127 ~~~~~C~~~~L~~~aL~~a~~Ir~QL~~~l~------~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iH  200 (294)
                      ...-.|.++.+.+.+|+++++++....+...      +..+.   ...+|+.++++|++.|..                 
T Consensus       480 s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~---~~eGDh~tlL~vy~~~~~-----------------  539 (674)
T KOG0922|consen  480 SSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFA---NPEGDHLTLLNVYESWKE-----------------  539 (674)
T ss_pred             ccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhc---CcccCHHHHHHHHHHHHh-----------------
Confidence            3467899999999999999988432222211      12221   123689999999998854                 


Q ss_pred             CCccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HH
Q psy2072         201 PTVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YI  273 (294)
Q Consensus       201 PsS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~  273 (294)
                           .+.+.+||++||+|+|+|++|.+||+||++++++++++..+|+    .+.+.||||||+|||+|+|       |+
T Consensus       540 -----~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~----~d~~~i~k~l~aGff~N~A~~~~~~~Yr  610 (674)
T KOG0922|consen  540 -----NGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG----GDMEKIRKCLCAGFFRNVAERDYQDGYR  610 (674)
T ss_pred             -----cCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC----CCHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence                 5778899999999999999999999999999999999997754    4568999999999999998       56


Q ss_pred             HhcCCcEEEEecCCcccc
Q psy2072         274 NIRKSLVTGFFMQCLLGI  291 (294)
Q Consensus       274 ~~~~~~~v~ihPsS~l~~  291 (294)
                      ++.+|+.|+|||||+|..
T Consensus       611 ti~~~~~v~IHPSS~l~~  628 (674)
T KOG0922|consen  611 TIRGGQPVYIHPSSVLFR  628 (674)
T ss_pred             EccCCcEEEEechHHhhc
Confidence            788999999999999853

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=99.81  E-value=1.3e-19  Score=183.79  Aligned_cols=188  Identities=19%  Similarity=0.210  Sum_probs=153.1

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA   73 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~   73 (294)
                      +|||+..++..|++.|.         .||++|++|+.||+||++|+||+.+...+|.++ +++|+|              
T Consensus       427 ld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e-~~~Ias--------------  491 (845)
T COG1643         427 LDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGE-AATIAS--------------  491 (845)
T ss_pred             CCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHH-HHHHHH--------------
Confidence            68999999999999998         799999999999999999999999999999999 999999              


Q ss_pred             hhhhhHhhhhccc---cccCChhHHH---HHHHHh-hhhcc---CCCCHhHHHHHHHHHHhcC------CChhhHHhhcc
Q psy2072          74 YGLQSTRLMKLIQ---EAARPNEAKK---AADDAK-MRFAH---IDGDHLTLLNVYHAFKQNQ------EDPQWCYDNFV  137 (294)
Q Consensus        74 ~~~~~~~~ls~~~---~f~~~~~~~~---~~~~~~-~~f~~---~~gDhlt~l~~~~~~~~~~------~~~~~C~~~~L  137 (294)
                             +||+++   .|..+.+.++   ..+.++ .++.+   +.+||++++++|..|...+      ...+||..+.+
T Consensus       492 -------~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~  564 (845)
T COG1643         492 -------MLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLF  564 (845)
T ss_pred             -------hhccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcC
Confidence                   999988   6887766655   333333 34545   6899999999999999877      67899999999


Q ss_pred             CHHHHHhHHHHHHHHHHHHHH-cCccCCCCCC---------------CChhhHHHHHHHHHhchhhhHHHHhh-------
Q psy2072         138 NYRSLKSADNVRQQLSRIMDR-FNLKRSSTEF---------------TSKDYYINIRKSLVTGFFMQLIIVLA-------  194 (294)
Q Consensus       138 ~~~aL~~a~~Ir~QL~~~l~~-~~l~~~s~~~---------------~d~~~~l~I~kal~aG~~~nvA~~~~-------  194 (294)
                      +..+|..+..++.++.....+ .+......+.               .+. .+..+.+++++|++.|++.+..       
T Consensus       565 ~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~l~a~~~~~~~~~~~~~~~~~~  643 (845)
T COG1643         565 PTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEP-IWDDIRGALAAGRKLNIAQLQLDGRPYVT  643 (845)
T ss_pred             ChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccch-hHHHHhhhhhhheecceeeeecccccccc
Confidence            999999999998887776665 3332221111               112 4678899999999999998753       


Q ss_pred             ----cccccCCCc-cCCCCCcccc
Q psy2072         195 ----YPISSLPTV-SLDQEDPQWC  213 (294)
Q Consensus       195 ----~p~~iHPsS-~l~~~~~~WC  213 (294)
                          .++.+||++ .......+|.
T Consensus       644 ~~~~~~v~~~~~~v~~~~~~~~~~  667 (845)
T COG1643         644 LSDNTPVFAHPSSVRLGLVLLEWI  667 (845)
T ss_pred             CCCCceeEecchhHhhcccCcchH
Confidence                346799999 5666677886

>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length

Probab=99.68  E-value=3.3e-17  Score=127.27  Aligned_cols=82  Identities=26%  Similarity=0.318  Sum_probs=56.6

Q ss_pred             HHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhhhh
Q psy2072          13 SGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMK   83 (294)
Q Consensus        13 ~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls   83 (294)
                      +|++.|+         +||++|+.|+.||++|++||||+.|..++|.++ +++|+|                     +||
T Consensus         1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~-~~~iaa---------------------~ls   58 (102)
T PF04408_consen    1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDE-ALIIAA---------------------ILS   58 (102)
T ss_dssp             -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHH-HHHHHH---------------------HHT
T ss_pred             CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHH-HHHHHH---------------------HHc
Confidence            3566665         799999999999999999999999999999999 999999                     999


Q ss_pred             ccccccCChhHHHH--HHHHh---------hhhccCCCCHhHHH
Q psy2072          84 LIQEAARPNEAKKA--ADDAK---------MRFAHIDGDHLTLL  116 (294)
Q Consensus        84 ~~~~f~~~~~~~~~--~~~~~---------~~f~~~~gDhlt~l  116 (294)
                      ++++|..+.++++.  .+..+         ..+.+..|||+|+|
T Consensus        59 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL  102 (102)
T PF04408_consen   59 VRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDESDHLTLL  102 (102)
T ss_dssp             SS--B---CCGHHHHHH--HHHTT----------BTTBHHHHHH
T ss_pred             CCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence            99999987543322  22233         34578899999986

It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.

>smart00847 HA2 Helicase associated domain (HA2) Add an annotation

Probab=99.59  E-value=1.5e-15  Score=115.37  Aligned_cols=74  Identities=32%  Similarity=0.407  Sum_probs=66.7

Q ss_pred             hccHHHHHHHhCCCChHHHHHHHhhccC-CCCccchHHHhhcccccCCCccccchhhhhhHhhhhccccccCChhHHHHH
Q psy2072          20 DLVSLESQMATLGSDNIVCVLTTTSCFA-PRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAA   98 (294)
Q Consensus        20 ~lT~lG~~~~~~p~~p~~~~~ll~~~~~-~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls~~~~f~~~~~~~~~~   98 (294)
                      +||++|+.|+.||++|++||||+.+..+ +|.++ +++|+|                     +++..++|..+ .++...
T Consensus        17 ~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~-~~~i~a---------------------~ls~~~~~~~~-~~~~~~   73 (92)
T smart00847       17 RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDE-ILTIAA---------------------MLSVGDPFPRP-EKRAEA   73 (92)
T ss_pred             CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHH-HHHHHH---------------------HhcCCCCcCCc-hHHHHH
Confidence            7999999999999999999999999999 89999 999999                     99999988776 455667


Q ss_pred             HHHhhhhccC-CCCHhHHH
Q psy2072          99 DDAKMRFAHI-DGDHLTLL  116 (294)
Q Consensus        99 ~~~~~~f~~~-~gDhlt~l  116 (294)
                      +..+..|.+. .|||++++
T Consensus        74 ~~~~~~~~~~~~~D~~~~l   92 (92)
T smart00847       74 DAARRRFASGRESDHLTLL   92 (92)
T ss_pred             HHHHHHccCCCCCChhhhC
Confidence            7788899888 89999864

This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.

>KOG0923|consensus

Probab=99.52  E-value=3.9e-15  Score=144.39  Aligned_cols=131  Identities=24%  Similarity=0.444  Sum_probs=105.9

Q ss_pred             HHhhccCHHHHHhHH-HHHHHHHHHH-----HHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCccC
Q psy2072         132 CYDNFVNYRSLKSAD-NVRQQLSRIM-----DRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTVSL  205 (294)
Q Consensus       132 C~~~~L~~~aL~~a~-~Ir~QL~~~l-----~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS~l  205 (294)
                      |.++.+.+.+|+++- .++....+..     .+.++.   ...+||..+++|+..|..                      
T Consensus       701 cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~---~~~gDhi~~L~vyn~w~e----------------------  755 (902)
T KOG0923|consen  701 CSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFE---EPVGDHIVLLNVYNQWKE----------------------  755 (902)
T ss_pred             chHHHHHHHHHHhcCchheecchhhhhhhhhhhhccC---CCCcchhhhhHHHHHHhh----------------------
Confidence            999999999999985 4543333211     111221   124688899999988854                      


Q ss_pred             CCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhcCC
Q psy2072         206 DQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIRKS  278 (294)
Q Consensus       206 ~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~~~  278 (294)
                      .+++.+||++||+.+|+|.+|++||.||..++.+.++...|+.    .+...||+|+++|||.|+|       |+++...
T Consensus       756 s~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~----~~~~~irk~i~aGff~h~a~l~~~g~y~tvk~~  831 (902)
T KOG0923|consen  756 SKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ----NDLDKIRKAITAGFFYHTAKLSKGGHYRTVKHP  831 (902)
T ss_pred             cchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh----HHHHHHHHHHhccccccceeccCCCcceeeccC
Confidence            5778899999999999999999999999999999999887743    3567899999999999997       8899999


Q ss_pred             cEEEEecCCcccc
Q psy2072         279 LVTGFFMQCLLGI  291 (294)
Q Consensus       279 ~~v~ihPsS~l~~  291 (294)
                      +.|++||.|++..
T Consensus       832 ~tv~~hp~S~l~~  844 (902)
T KOG0923|consen  832 QTVSIHPNSGLFE  844 (902)
T ss_pred             cceeecCcccccc
Confidence            9999999998754

>PRK11131 ATP-dependent RNA helicase HrpA; Provisional

Probab=99.38  E-value=3.3e-13  Score=142.23  Aligned_cols=138  Identities=15%  Similarity=0.197  Sum_probs=101.3

Q ss_pred             hhhHHhhccCHHHHHhHHHHHHH-------HHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCC
Q psy2072         129 PQWCYDNFVNYRSLKSADNVRQQ-------LSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLP  201 (294)
Q Consensus       129 ~~~C~~~~L~~~aL~~a~~Ir~Q-------L~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHP  201 (294)
                      ...|.++.+.+.+++++.+.+..       .....+++.     ...+|+.++++++..+...    -...         
T Consensus       507 ~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~-----~~~sD~lt~ln~~~~~~~~----~~~~---------  568 (1294)
T PRK11131        507 KHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFA-----DKESDFLAFVNLWNYLQEQ----QKAL---------  568 (1294)
T ss_pred             hcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHH----Hhhh---------
Confidence            35799999999999999776421       122222231     2346888999998876431    0000         


Q ss_pred             CccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHHHHH-------
Q psy2072         202 TVSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYIN-------  274 (294)
Q Consensus       202 sS~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~-------  274 (294)
                         ..+..++||.+||||+++|+.+.+||+||.++++++|++..++    +.+++.|++||++|||.|+|.+.       
T Consensus       569 ---s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~----~~~~~~i~~all~G~~~nva~~~~~~~~y~  641 (1294)
T PRK11131        569 ---SSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSE----PAEYREIHTALLTGLLSHIGMKDAEKQEYT  641 (1294)
T ss_pred             ---cchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCC----cccHHHHHHHHHhhcHHHHeeccCCCCeEE
Confidence               0122357999999999999999999999999999999987653    24578999999999999998432       


Q ss_pred             hcCCcEEEEecCCcccc
Q psy2072         275 IRKSLVTGFFMQCLLGI  291 (294)
Q Consensus       275 ~~~~~~v~ihPsS~l~~  291 (294)
                      ...|..|+|||+|+|..
T Consensus       642 ~~~~~~~~ihP~S~L~~  658 (1294)
T PRK11131        642 GARNARFSIFPGSGLFK  658 (1294)
T ss_pred             ccCCcEEEEcCCccccC
Confidence            12377999999999854

>KOG0921|consensus

Probab=99.13  E-value=4.8e-11  Score=119.39  Aligned_cols=183  Identities=11%  Similarity=0.070  Sum_probs=136.8

Q ss_pred             CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072           2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN   72 (294)
Q Consensus         2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~   72 (294)
                      ||.||+..+++.+...|.         .+|++|+.++.+|++|++++|++.+.-++|.+- |+..|+             
T Consensus       814 al~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~~-m~~~as-------------  879 (1282)
T KOG0921|consen  814 ALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGSV-MCDVAS-------------  879 (1282)
T ss_pred             ccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhccCcccccceeeechhhccchh-hhhhhc-------------
Confidence            688999999888877776         799999999999999999999999999999999 999998             


Q ss_pred             hhhhhhHhhhhccccccCChh-----HHHHHHHHhhhhcc-CCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHH
Q psy2072          73 AYGLQSTRLMKLIQEAARPNE-----AKKAADDAKMRFAH-IDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSAD  146 (294)
Q Consensus        73 ~~~~~~~~~ls~~~~f~~~~~-----~~~~~~~~~~~f~~-~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~  146 (294)
                              .+|...+|..-..     ..++..-++.+|++ -.+||.+.+..+..|......++||...+++...|....
T Consensus       880 --------~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~t~  951 (1282)
T KOG0921|consen  880 --------AMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKMTD  951 (1282)
T ss_pred             --------ccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhhhh
Confidence                    7777666653211     11223344555553 356777777778888777677899999999999999999


Q ss_pred             HHHHHHHHHHHHcCccCCCC------CCCChhhHHHHHHHHHhchhhhHHHHhhc---------ccccCCCccCC
Q psy2072         147 NVRQQLSRIMDRFNLKRSST------EFTSKDYYINIRKSLVTGFFMQLIIVLAY---------PISSLPTVSLD  206 (294)
Q Consensus       147 ~Ir~QL~~~l~~~~l~~~s~------~~~d~~~~l~I~kal~aG~~~nvA~~~~~---------p~~iHPsS~l~  206 (294)
                      ..+.|+...+++..++....      -.+++.+...++..+++++++|++.....         ..-||-.|++.
T Consensus       952 ~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~~~alihk~Svnc 1026 (1282)
T KOG0921|consen  952 GARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQSSALIHKYSVNC 1026 (1282)
T ss_pred             hhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceeccceeEEeecchhhhhhhhcccC
Confidence            99999999999877653211      01233455556667789989988876531         12466666543

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional

Probab=98.98  E-value=5.3e-09  Score=107.91  Aligned_cols=56  Identities=21%  Similarity=0.221  Sum_probs=49.9

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCc--cchHHHhh
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVA--DNLDPIAA   59 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~--~~~~~i~a   59 (294)
                      ||||+.+++.+|++.|.         +||++|+.|++||++|++|+||+.|..++|..  . ++.|+|
T Consensus       378 ld~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~-a~~laa  444 (812)
T PRK11664        378 LDQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALAT-AAKLAA  444 (812)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHH-HHHHHH
Confidence            79999999999999998         79999999999999999999999999988543  4 555555

>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA

Probab=98.98  E-value=5.5e-10  Score=118.51  Aligned_cols=137  Identities=16%  Similarity=0.192  Sum_probs=97.4

Q ss_pred             hhHHhhccCHHHHHhHHHHHH-------HHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCC
Q psy2072         130 QWCYDNFVNYRSLKSADNVRQ-------QLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPT  202 (294)
Q Consensus       130 ~~C~~~~L~~~aL~~a~~Ir~-------QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPs  202 (294)
                      ..|.++.+.+.+++++.+.+.       +.....+++.     ...+|+.+++++++.+...    -...          
T Consensus       499 ~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~-----~~~sD~l~~L~~~~~~~~~----~~~~----------  559 (1283)
T TIGR01967       499 LGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFK-----DPRSDFLSRVNLWRHIEEQ----RQAL----------  559 (1283)
T ss_pred             cCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHHh----hhhc----------
Confidence            359999999999999876532       1222222221     1235778888888766321    0000          


Q ss_pred             ccCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHHHHH------hc
Q psy2072         203 VSLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDYYIN------IR  276 (294)
Q Consensus       203 S~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~------~~  276 (294)
                        ..+..++||.+||||+++|+++.++++||.+++++++++..++    ..+++.|.+||++|||.|+|.+.      ..
T Consensus       560 --~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~----~~~~~~i~~~l~~g~~~~iA~~~~~~~y~~~  633 (1283)
T TIGR01967       560 --SANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEE----PADYDAIHKALLSGLLSQIGMKDEKHEYDGA  633 (1283)
T ss_pred             --cchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCC----CccHHHHHHHHHHhhHHHHheeCCCCcEEec
Confidence              0123468999999999999999999999999999998876542    23456799999999999999532      12


Q ss_pred             CCcEEEEecCCcccc
Q psy2072         277 KSLVTGFFMQCLLGI  291 (294)
Q Consensus       277 ~~~~v~ihPsS~l~~  291 (294)
                      +|..+.|||+|+|..
T Consensus       634 ~g~~~~ihP~S~L~~  648 (1283)
T TIGR01967       634 RGRKFHIFPGSPLFK  648 (1283)
T ss_pred             CCcEEEECCCccccC
Confidence            478999999999864

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB

Probab=98.94  E-value=8.8e-10  Score=113.55  Aligned_cols=56  Identities=20%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhh
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAA   59 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a   59 (294)
                      ||||+.+++.+|++.|+         +||++|+.|+.||++|++||||+.|..++|.++ +++|||
T Consensus       375 l~~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~-~~~iaa  439 (819)
T TIGR01970       375 LDAPPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAAL-ACDLAA  439 (819)
T ss_pred             CCCcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHH-HHHHHH
Confidence            79999999999999998         799999999999999999999999999999999 999999

This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)

Probab=98.81  E-value=1.8e-09  Score=85.14  Aligned_cols=60  Identities=23%  Similarity=0.322  Sum_probs=41.5

Q ss_pred             HHHHHHHHHcCCCCCCCCC---------CCcchhhhHHHHHHhhhhhhHH-------HHHhcCCcEEEEecCCccc
Q psy2072         231 QQLSRIMDRFNLKRSSTEF---------TSKDYYINIRKSLVTGFFMQDY-------YINIRKSLVTGFFMQCLLG  290 (294)
Q Consensus       231 ~QL~~~~~~~~~~~~s~~~---------~~~~~~~~i~k~l~~Gff~n~A-------~~~~~~~~~v~ihPsS~l~  290 (294)
                      +||.+++++.|+...+...         ....+.+.|++||++|||.|+|       |+++.++..|+|||+|++.
T Consensus         1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~   76 (114)
T PF07717_consen    1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLF   76 (114)
T ss_dssp             HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTT
T ss_pred             CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccc
Confidence            6999999999886544211         1114568999999999999998       4566678899999999984

In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.

>PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO)

Probab=98.17  E-value=4.7e-07  Score=71.30  Aligned_cols=69  Identities=28%  Similarity=0.500  Sum_probs=45.7

Q ss_pred             HHHHHHHHHcCccCCCCCC---------CChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCc
Q psy2072         150 QQLSRIMDRFNLKRSSTEF---------TSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDP  210 (294)
Q Consensus       150 ~QL~~~l~~~~l~~~s~~~---------~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~  210 (294)
                      +||.+++++.++...+...         .+..+...|++++++|||+|+|++..          .+++|||+|++++..+
T Consensus         1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~~~p   80 (114)
T PF07717_consen    1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFKKPP   80 (114)
T ss_dssp             HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTTTT-
T ss_pred             CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCcccccccc
Confidence            5899999999886544311         11146678999999999999998653          2478999999999999


Q ss_pred             ccc-ccccc
Q psy2072         211 QWC-YDNFV  218 (294)
Q Consensus       211 ~WC-~~~~l  218 (294)
                      .|+ +...+
T Consensus        81 ~~vvy~e~~   89 (114)
T PF07717_consen   81 KWVVYHELV   89 (114)
T ss_dssp             SEEEEEEEE
T ss_pred             ccchhhhhe
Confidence            997 54444

In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B.

>KOG0920|consensus

Probab=97.56  E-value=5.7e-05  Score=78.09  Aligned_cols=83  Identities=14%  Similarity=0.236  Sum_probs=63.8

Q ss_pred             CCccccccccccccccccHHHHHHHHHHHHHHcCCCCCC-------CC-CCCcchhhhHHHHHHhhhhhhHHHHH-----
Q psy2072         208 EDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSS-------TE-FTSKDYYINIRKSLVTGFFMQDYYIN-----  274 (294)
Q Consensus       208 ~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s-------~~-~~~~~~~~~i~k~l~~Gff~n~A~~~-----  274 (294)
                      ...+||.+|||++.+|+...+.|.|+...+.+.|+-..+       .+ .....+.+.++.+||+|++.|+|+.-     
T Consensus       703 ~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~  782 (924)
T KOG0920|consen  703 AEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPK  782 (924)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCC
Confidence            356899999999999999999999999999998864322       11 11223567899999999999998532     


Q ss_pred             -----hcCC--cEEEEecCCccc
Q psy2072         275 -----IRKS--LVTGFFMQCLLG  290 (294)
Q Consensus       275 -----~~~~--~~v~ihPsS~l~  290 (294)
                           ..++  ..|++||+|+..
T Consensus       783 ~~~~~~~~~~~~~v~i~~~sv~~  805 (924)
T KOG0920|consen  783 SKSVTFVTKADGRVIIHPSSVNE  805 (924)
T ss_pred             cCcceeecCCceeEEEecchhhc
Confidence                 1233  399999999864

>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]

Probab=97.52  E-value=7.8e-05  Score=76.99  Aligned_cols=80  Identities=13%  Similarity=0.100  Sum_probs=64.9

Q ss_pred             CccccccccccccccccHHHHHHHHHHHHHH-cCCCCCCCCCCC--------------cchhhhHHHHHHhhhhhhHH--
Q psy2072         209 DPQWCYDNFVNYRSLKSADNVRQQLSRIMDR-FNLKRSSTEFTS--------------KDYYINIRKSLVTGFFMQDY--  271 (294)
Q Consensus       209 ~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~-~~~~~~s~~~~~--------------~~~~~~i~k~l~~Gff~n~A--  271 (294)
                      ...||..+++++++|.++..++.|+.....+ ++..+...+.+.              +..++.+++|+++|+++|++  
T Consensus       555 ~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~  634 (845)
T COG1643         555 RANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQL  634 (845)
T ss_pred             HhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeee
Confidence            5689999999999999999999999999888 665543322211              11467899999999999996  


Q ss_pred             ------HHHhcCCcEEEEecCCc
Q psy2072         272 ------YINIRKSLVTGFFMQCL  288 (294)
Q Consensus       272 ------~~~~~~~~~v~ihPsS~  288 (294)
                            |+++.++..|.+||+|+
T Consensus       635 ~~~~~~~~~~~~~~~v~~~~~~v  657 (845)
T COG1643         635 QLDGRPYVTLSDNTPVFAHPSSV  657 (845)
T ss_pred             eccccccccCCCCceeEecchhH
Confidence                  57878899999999995

>KOG3843|consensus

Probab=97.32  E-value=3.9e-05  Score=68.46  Aligned_cols=83  Identities=52%  Similarity=0.938  Sum_probs=71.5

Q ss_pred             CCCCCCHHHHHHHHHHhhhccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhh
Q psy2072           2 SLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRL   81 (294)
Q Consensus         2 ~l~pP~~~~l~~a~~~L~~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~   81 (294)
                      |.+|--.|.+....+...++-...+.+.+++-|..++.+-..||..+-+.+|+-.|+|+|..+|+||++||+||+|+..+
T Consensus       124 gfepiiie~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~  203 (432)
T KOG3843|consen  124 GFEPIIIENILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEEC  203 (432)
T ss_pred             CCCceeeeccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHH
Confidence            45666777777777776677777888999999999999999999999888889999999999999999999999999988


Q ss_pred             hhc
Q psy2072          82 MKL   84 (294)
Q Consensus        82 ls~   84 (294)
                      +..
T Consensus       204 i~~  206 (432)
T KOG3843|consen  204 IHK  206 (432)
T ss_pred             HHH
Confidence            764

>KOG0926|consensus

Probab=96.86  E-value=0.0015  Score=66.27  Aligned_cols=80  Identities=13%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             CccccccccccccccccHHHHHHHHHHHHHHcCCC-------CCCCCCCCcchhhhHHHHHHhhhhhhHHHHH-------
Q psy2072         209 DPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLK-------RSSTEFTSKDYYINIRKSLVTGFFMQDYYIN-------  274 (294)
Q Consensus       209 ~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~-------~~s~~~~~~~~~~~i~k~l~~Gff~n~A~~~-------  274 (294)
                      ...||..|+|..++|..+++.|+||..++.+..+.       ...... .+.....+|..||+||.-++|++.       
T Consensus       888 ~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~pp-t~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~  966 (1172)
T KOG0926|consen  888 GMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPP-TDTQAKLLRQMICAGFADRVARKVDATEYDA  966 (1172)
T ss_pred             cchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcccCCCCC-chHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            44599999999999999999999999999754332       111110 112234678999999999999754       


Q ss_pred             hcCCcEEEEecCCcc
Q psy2072         275 IRKSLVTGFFMQCLL  289 (294)
Q Consensus       275 ~~~~~~v~ihPsS~l  289 (294)
                      ..-+..|++||+|+|
T Consensus       967 ~~i~~~~fl~~~svl  981 (1172)
T KOG0926|consen  967 AKIQEPVFLHRWSVL  981 (1172)
T ss_pred             hhhcCceeeeehhhh
Confidence            223679999999987

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=96.86  E-value=0.00013  Score=68.81  Aligned_cols=61  Identities=57%  Similarity=1.149  Sum_probs=45.1

Q ss_pred             HHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccchhhhhhHhhhhc
Q psy2072          24 LESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKL   84 (294)
Q Consensus        24 lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~~~~~~~~~ls~   84 (294)
                      .-+.+-++.-+|.++.+-..++.++-..+++..|+-||..||||||||||||+|+++++..
T Consensus       144 ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~  204 (389)
T PF05889_consen  144 IEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHL  204 (389)
T ss_dssp             HHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHH
T ss_pred             HHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHH
Confidence            4456666777777777777788888655559999999999999999999999999998774

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PHA02653 RNA helicase NPH-II; Provisional

Probab=92.43  E-value=0.097  Score=53.58  Aligned_cols=41  Identities=10%  Similarity=0.084  Sum_probs=37.7

Q ss_pred             CCCCCCHHHHHHHHHHhh-------hccHH--HHHHHhCCCChHHHHHHHhhcc
Q psy2072           2 SLHPIVIETLMSGDELRT-------DLVSL--ESQMATLGSDNIVCVLTTTSCF   46 (294)
Q Consensus         2 ~l~pP~~~~l~~a~~~L~-------~lT~l--G~~~~~~p~~p~~~~~ll~~~~   46 (294)
                      .||||+.+++.+|++.|.       +||++  |+.|+.+    ++||+++.|..
T Consensus       546 ~ldpP~~~~l~~A~~~L~~lga~~~~l~~l~~~~~~~~~----~~~k~~~~g~~  595 (675)
T PHA02653        546 FVIPSNLDRLRKTEEYIDSFNISIEKWYEILSNYYVNML----EYAKIYVKGGI  595 (675)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCCchhhhhhhccccHHHH----HHhHHHhcccH
Confidence            489999999999999998       89999  9999999    99999988753

>PRK01172 ski2-like helicase; Provisional

Probab=89.22  E-value=5.5  Score=40.83  Aligned_cols=42  Identities=10%  Similarity=-0.086  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHhh-----------hccHHHHHHHhCCCChHHHHHHHhhccCCC
Q psy2072           8 IETLMSGDELRT-----------DLVSLESQMATLGSDNIVCVLTTTSCFAPR   49 (294)
Q Consensus         8 ~~~l~~a~~~L~-----------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c   49 (294)
                      .+.++.|++.|.           ..|++|+.++.+|++|..++.+..+....-
T Consensus       443 ~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~  495 (674)
T PRK01172        443 DYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFDHDY  495 (674)
T ss_pred             HHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhhccC
Confidence            467888999997           469999999999999999999998876543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	294
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		3e-30
3kx2_B	767	Crystal Structure Of Prp43p In Complex With Adp Len		2e-16
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		3e-30
2xau_A	773	Crystal Structure Of The Prp43p Deah-Box Rna Helica		2e-16
3hl2_A	501	The Crystal Structure Of The Human Sepsecs-Trnasec		8e-27
3bc8_A	450	Crystal Structure Of Mouse Selenocysteine Synthase		1e-26
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		1e-16
3i4u_A	270	Crystal Structure Analysis Of A Helicase Associated		3e-06
2z67_A	456	Crystal Structure Of Archaeal O-phosphoseryl-trna(s		1e-09

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 4/104 (3%)
Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDP----QWCYDNFVNYRSLKSA 145
           RP + KK ADDAK  FAH DGDH+TLLNVYHAFK ++       +WC D+++NYRSL +A
Sbjct: 557 RPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616
Query: 146 DNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           DN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ+
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQV 660

>pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 211 QWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQD 270
           +WC D+++NYRSL +ADN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ 
Sbjct: 601 KWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQ- 659
Query: 271 YYINIRKSLVTGFF 284
             +  ++S   G+ 
Sbjct: 660 --VAKKRSGAKGYI 671

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 4/104 (3%)
Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDP----QWCYDNFVNYRSLKSA 145
           RP + KK ADDAK  FAH DGDH+TLLNVYHAFK ++       +WC D+++NYRSL +A
Sbjct: 557 RPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616
Query: 146 DNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQL 189
           DN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ+
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQV 660

>pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 55/74 (74%), Gaps = 3/74 (4%)
Query: 211 QWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQD 270
           +WC D+++NYRSL +ADN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ 
Sbjct: 601 KWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQ- 659
Query: 271 YYINIRKSLVTGFF 284
             +  ++S   G+ 
Sbjct: 660 --VAKKRSGAKGYI 671

>pdb|3HL2|A Chain A, The Crystal Structure Of The Human Sepsecs-Trnasec Complex Length = 501

Iteration: 1
 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 69/89 (77%)
Query: 2   SLHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALC 61
              P+VIE ++ GDELRTDL ++E+++  LG D I+C+ +TTSCFAPRV D L+ +A +C
Sbjct: 183 GFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVIC 242
Query: 62  QRYNIPHVINNAYGLQSTRLMKLIQEAAR 90
             Y+IPH++NNAYG+QS++ M LIQ+ AR
Sbjct: 243 ANYDIPHIVNNAYGVQSSKCMHLIQQGAR 271

>pdb|3BC8|A Chain A, Crystal Structure Of Mouse Selenocysteine Synthase Length = 450

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 48/86 (55%), Positives = 70/86 (81%)
Query: 5   PIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRY 64
           P+VIE ++ GDELRTDL ++E+++  LG ++I+C+ +TT+CFAPRV D L+ +A +C  Y
Sbjct: 168 PVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY 227
Query: 65  NIPHVINNAYGLQSTRLMKLIQEAAR 90
           +IPHV+NNAYGLQS++ M LIQ+ AR
Sbjct: 228 DIPHVVNNAYGLQSSKCMHLIQQGAR 253

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 97/175 (55%), Gaps = 12/175 (6%)
Query: 14  GDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVAD-NLDPIAALCQRYNIP-HVIN 71
           G  + T + ++E Q+ TLG+ +   +LT       R+A+  L+P+  LC+   +  H+  
Sbjct: 14  GSPMETLITAME-QLYTLGALDDEGLLTR---LGRRMAEFPLEPM--LCKMLIMSVHLGC 67
Query: 72  NAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQW 131
           +   L    ++ +     RP + +  AD  K +F   +GDHLTLL VY+++K N+    W
Sbjct: 68  SEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPW 127
Query: 132 CYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFF 186
           CY+NF+  RSL+ A ++R+Q+  IMDR  L   S   ++    + ++K++ +GFF
Sbjct: 128 CYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKST----VRVQKAICSGFF 178

>pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 4/56 (7%)
Query: 212 WCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFF 267
           WCY+NF+  RSL+ A ++R+Q+  IMDR  L   S   ++    + ++K++ +GFF
Sbjct: 127 WCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKST----VRVQKAICSGFF 178

>pdb|2Z67|A Chain A, Crystal Structure Of Archaeal O-phosphoseryl-trna(sec) Selenium Transferase (sepsecs) Length = 456

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 54/85 (63%), Gaps = 5/85 (5%)
Query: 7   VIETLMSGDELRTDLVSLESQMAT---LGSDNIVCVLTTTSCFAPRVADNLDPIAALCQR 63
           ++ET++ GD +   +  +E+ +     LG  N  CVL+T + F PR +D++  IA +C+ 
Sbjct: 202 LVETVLDGDRVYVPVEDIENAIKKEIELG--NRPCVLSTLTFFPPRNSDDIVEIAKICEN 259
Query: 64  YNIPHVINNAYGLQSTRLMKLIQEA 88
           Y+IPH+IN AY +Q+   ++ +++A
Sbjct: 260 YDIPHIINGAYAIQNNYYLEKLKKA 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	294
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	2e-45
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	2e-21
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	2e-43
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	1e-22
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	2e-31
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	6e-30
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	6e-20
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	3e-04

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score =  153 bits (390), Expect = 2e-45
 Identities = 38/99 (38%), Positives = 59/99 (59%), Gaps = 4/99 (4%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVR 149
           RP + +  AD  K +F   +GDHLTLL VY+++K N+    WCY+NF+  RSL+ A ++R
Sbjct: 86  RPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIR 145

Query: 150 QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ 188
           +Q+  IMDR  L   S         + ++K++ +GFF  
Sbjct: 146 KQMLGIMDRHKLDVVSCG----KSTVRVQKAICSGFFRN 180

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270

 Score = 90.0 bits (224), Expect = 2e-21
 Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 207 QEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGF 266
           +    WCY+NF+  RSL+ A ++R+Q+  IMDR  L   S         + ++K++ +GF
Sbjct: 122 KFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG----KSTVRVQKAICSGF 177

Query: 267 FMQ 269
           F  
Sbjct: 178 FRN 180

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score =  156 bits (397), Expect = 2e-43
 Identities = 58/103 (56%), Positives = 79/103 (76%), Gaps = 4/103 (3%)

Query: 90  RPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQED----PQWCYDNFVNYRSLKSA 145
           RP + KK ADDAK  FAH DGDH+TLLNVYHAFK ++       +WC D+++NYRSL +A
Sbjct: 557 RPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAA 616

Query: 146 DNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQ 188
           DN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +GFFMQ
Sbjct: 617 DNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQ 659

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773

 Score = 96.6 bits (241), Expect = 1e-22
 Identities = 32/64 (50%), Positives = 50/64 (78%)

Query: 206 DQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTG 265
           +    +WC D+++NYRSL +ADN+R QL R+M+R+NL+ ++T++ S  Y+ NIRK+L +G
Sbjct: 596 EYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASG 655

Query: 266 FFMQ 269
           FFMQ
Sbjct: 656 FFMQ 659

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score =  120 bits (303), Expect = 2e-31
 Identities = 48/88 (54%), Positives = 70/88 (79%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P+VIE ++ GDELRTDL ++E+++  LG ++I+C+ +TT+CFAPRV D L+ +A +C 
Sbjct: 166 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA 225

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
            Y+IPHV+NNAYGLQS++ M LIQ+ AR
Sbjct: 226 NYDIPHVVNNAYGLQSSKCMHLIQQGAR 253

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score =  117 bits (293), Expect = 6e-30
 Identities = 48/88 (54%), Positives = 69/88 (78%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P+VIE ++ GDELRTDL ++E+++  LG D I+C+ +TTSCFAPRV D L+ +A +C 
Sbjct: 184 FEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICA 243

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR 90
            Y+IPH++NNAYG+QS++ M LIQ+ AR
Sbjct: 244 NYDIPHIVNNAYGVQSSKCMHLIQQGAR 271

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 88.6 bits (219), Expect = 6e-20
 Identities = 27/91 (29%), Positives = 57/91 (62%), Gaps = 1/91 (1%)

Query: 1   MSLHPIVIETLMSGDELRTDLVSLESQMAT-LGSDNIVCVLTTTSCFAPRVADNLDPIAA 59
           + ++  ++ET++ GD +   +  +E+ +   +   N  CVL+T + F PR +D++  IA 
Sbjct: 196 VGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAK 255

Query: 60  LCQRYNIPHVINNAYGLQSTRLMKLIQEAAR 90
           +C+ Y+IPH+IN AY +Q+   ++ +++A +
Sbjct: 256 ICENYDIPHIINGAYAIQNNYYLEKLKKAFK 286

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 34/260 (13%), Positives = 90/260 (34%), Gaps = 50/260 (19%)

Query: 50  VADNLDPIAALCQRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHID 109
             D  D   ++  +  I H+I +   +  T  +     + +    +K  ++       + 
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV------LR 88

Query: 110 GDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFT 169
            ++  L++     K  Q  P      ++  R     DN      ++  ++N+ R      
Sbjct: 89  INYKFLMS---PIKTEQRQPSMMTRMYIEQRDRLYNDN------QVFAKYNVSR------ 133

Query: 170 SKDYYINIRKSLVTGFFMQL----IIVLAYPI-----SSLPTVSLDQEDPQWCYDN--F- 217
               Y+ +R++L     ++L     +++   +     + +          Q   D   F 
Sbjct: 134 -LQPYLKLRQAL-----LELRPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFW 186

Query: 218 VNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIR--KSLVTGFFMQDYY--- 272
           +N ++  S + V + L +++ + +   +S    S +  + I   ++ +        Y   
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 273 --I--NIR-KSLVTGFFMQC 287
             +  N++       F + C
Sbjct: 247 LLVLLNVQNAKAWNAFNLSC 266

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 40.9 bits (95), Expect = 3e-04
 Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 20  DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIPHVINNAYG 75
           D+  L+  +A  G+DNIV +++T +C +    P    NL  +  + +++ I  V+++A  
Sbjct: 168 DIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARF 227

Query: 76  LQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDG 110
            ++   +K         +     +     + + D 
Sbjct: 228 CENAYFIKARDPKY---KNATIKEVIFDMYKYADA 259

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	294
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	100.0
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.97
3i4u_A	270	ATP-dependent RNA helicase DHX8; splicing, ATP-bin	99.74
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	99.41
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	98.02
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	98.01
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	97.71

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.3e-41  Score=301.53  Aligned_cols=191  Identities=29%  Similarity=0.510  Sum_probs=172.9

Q ss_pred             CCCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccc
Q psy2072           2 SLHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINN   72 (294)
Q Consensus         2 ~l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~   72 (294)
                      +||||+.+++.+|++.|+         +||++|+.|++||++|++||||+.|..++|.++ +++|||             
T Consensus        11 ~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~-~l~iaA-------------   76 (270)
T 3i4u_A           11 GTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEE-MLTIVS-------------   76 (270)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHH-HHHHHH-------------
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHH-HHHHHH-------------
Confidence            589999999999999998         799999999999999999999999999999999 999999             


Q ss_pred             hhhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHHhHHHHHHHH
Q psy2072          73 AYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQL  152 (294)
Q Consensus        73 ~~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~~a~~Ir~QL  152 (294)
                              +||++++|++|.++++++++++.+|.+++|||+|++|+|++|++++.+++||.+++|+.++|+++.++++||
T Consensus        77 --------~Ls~~~~f~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL  148 (270)
T 3i4u_A           77 --------MLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQM  148 (270)
T ss_dssp             --------HHTSSCCBCCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHH
T ss_pred             --------HHCCCccccCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHH
Confidence                    999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----------cccccCCCccCCCCCcccc-ccccc
Q psy2072         153 SRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----------YPISSLPTVSLDQEDPQWC-YDNFV  218 (294)
Q Consensus       153 ~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----------~p~~iHPsS~l~~~~~~WC-~~~~l  218 (294)
                      .+++++.+++..++.    .+...|++++++|||+|+|++..          .+++|||+|++++..++|+ +.+.+
T Consensus       149 ~~~l~~~~~~~~s~~----~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~~~p~wvvy~Elv  221 (270)
T 3i4u_A          149 LGIMDRHKLDVVSCG----KSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHELV  221 (270)
T ss_dssp             HHHHHHTTCCCCCCT----TCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTTSCCSEEEEEEEE
T ss_pred             HHHHHHcCCCcCCCc----chHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcCCCCCEEEEEehh
Confidence            999999988755433    34568999999999999998752          2468999999999889997 44444

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.97  E-value=2.6e-31  Score=270.62  Aligned_cols=188  Identities=40%  Similarity=0.663  Sum_probs=168.9

Q ss_pred             CCCCCHHHHHHHHHHhh---------hccHHHHHHHhCCCChHHHHHHHhhccCCCCccchHHHhhcccccCCCccccch
Q psy2072           3 LHPIVIETLMSGDELRT---------DLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQRYNIPHVINNA   73 (294)
Q Consensus         3 l~pP~~~~l~~a~~~L~---------~lT~lG~~~~~~p~~p~~~~~ll~~~~~~c~~~~~~~i~a~~~~~~~~~~~~~~   73 (294)
                      +|||+.+.+.+|++.|.         +||++|+.|+.||++|++||||+.|..++|.++ +++|+|              
T Consensus       483 ~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~-~l~i~a--------------  547 (773)
T 2xau_A          483 MDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQE-ILTIVA--------------  547 (773)
T ss_dssp             SSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHH-HHHHHH--------------
T ss_pred             cCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhH-HHHHHH--------------
Confidence            68999999999999998         799999999999999999999999999999999 999999              


Q ss_pred             hhhhhHhhhhccccccCChhHHHHHHHHhhhhccCCCCHhHHHHHHHHHHhcC---CC-hhhHHhhccCHHHHHhHHHHH
Q psy2072          74 YGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHIDGDHLTLLNVYHAFKQNQ---ED-PQWCYDNFVNYRSLKSADNVR  149 (294)
Q Consensus        74 ~~~~~~~~ls~~~~f~~~~~~~~~~~~~~~~f~~~~gDhlt~l~~~~~~~~~~---~~-~~~C~~~~L~~~aL~~a~~Ir  149 (294)
                             ||+++++|++|.+.+++++.+++.|.+++|||+|++|+|++|.++.   .. .+||.+++|++++|.++.+++
T Consensus       548 -------~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~  620 (773)
T 2xau_A          548 -------MLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIR  620 (773)
T ss_dssp             -------HHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHH
T ss_pred             -------hcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHH
Confidence                   9999999999999999999999999999999999999999997654   45 789999999999999999999


Q ss_pred             HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhh----c-------ccccCCCccCCCCCcccc
Q psy2072         150 QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLA----Y-------PISSLPTVSLDQEDPQWC  213 (294)
Q Consensus       150 ~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~----~-------p~~iHPsS~l~~~~~~WC  213 (294)
                      .||.+++++.+++..+........+..|++++++|||+|+|++..    |       .++|||+|++. ..++|+
T Consensus       621 ~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~-~~~~~~  694 (773)
T 2xau_A          621 SQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG-HDAEWV  694 (773)
T ss_dssp             HHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CEEETTTCCEEEECTTCCCC-TTCSEE
T ss_pred             HHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcceEeeCCCEEEECCCcccC-CCCCEE
Confidence            999999999988776554333455678999999999999997652    2       35799999994 347786

>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}

Probab=99.74  E-value=7.1e-19  Score=158.07  Aligned_cols=130  Identities=24%  Similarity=0.385  Sum_probs=103.0

Q ss_pred             hHHhhccCHHHHHhHHHHH-------HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCCCc
Q psy2072         131 WCYDNFVNYRSLKSADNVR-------QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLPTV  203 (294)
Q Consensus       131 ~C~~~~L~~~aL~~a~~Ir-------~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHPsS  203 (294)
                      .|.++.+.+.+|+++.+++       ++.....+++.     ...+|+.++++++++|..                    
T Consensus        66 ~c~~~~l~iaA~Ls~~~~f~~p~~~~~~a~~~~~~f~-----~~~sD~ltlLn~~~~~~~--------------------  120 (270)
T 3i4u_A           66 GCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFH-----QTEGDHLTLLAVYNSWKN--------------------  120 (270)
T ss_dssp             TCHHHHHHHHHHHTSSCCBCCCGGGHHHHHHHHHTTC-----BTTBHHHHHHHHHHHHHH--------------------
T ss_pred             CCHHHHHHHHHHHCCCccccCCchhHHHHHHHHHHcc-----CCCChHHHHHHHHHHHHH--------------------
Confidence            4888999999999886652       22222223331     123688899999988753                    


Q ss_pred             cCCCCCccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH-------HHHhc
Q psy2072         204 SLDQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY-------YINIR  276 (294)
Q Consensus       204 ~l~~~~~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A-------~~~~~  276 (294)
                        .+.+.+||.+|||++++|+++.+||+||.+++++.+++..+++    .+++.|++|||+|||.|+|       |+++.
T Consensus       121 --~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~~----~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~  194 (270)
T 3i4u_A          121 --NKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCG----KSTVRVQKAICSGFFRNAAKKDPQEGYRTLI  194 (270)
T ss_dssp             --TTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCT----TCTHHHHHHHHHHHGGGEEEECSSSSEEETT
T ss_pred             --cCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCCc----chHHHHHHHHHHHhHHHHheeCCCCceEEcc
Confidence              2446789999999999999999999999999999998876643    3467899999999999998       56788


Q ss_pred             CCcEEEEecCCcccc
Q psy2072         277 KSLVTGFFMQCLLGI  291 (294)
Q Consensus       277 ~~~~v~ihPsS~l~~  291 (294)
                      +|+.|+|||+|+|..
T Consensus       195 ~~~~v~iHPsS~L~~  209 (270)
T 3i4u_A          195 DQQVVYIHPSSALFN  209 (270)
T ss_dssp             TCCEEEECTTSTTTT
T ss_pred             CCCEEEECchhhhcC
Confidence            899999999999864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=99.41  E-value=3.8e-14  Score=144.36  Aligned_cols=138  Identities=30%  Similarity=0.530  Sum_probs=102.1

Q ss_pred             hhhHHhhccCHHHHHhHHHHH-------HHHHHHHHHcCccCCCCCCCChhhHHHHHHHHHhchhhhHHHHhhcccccCC
Q psy2072         129 PQWCYDNFVNYRSLKSADNVR-------QQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQLIIVLAYPISSLP  201 (294)
Q Consensus       129 ~~~C~~~~L~~~aL~~a~~Ir-------~QL~~~l~~~~l~~~s~~~~d~~~~l~I~kal~aG~~~nvA~~~~~p~~iHP  201 (294)
                      ...|.++.+.+.+|+++.+++       ++.....+++.     ...+|+.++++++++|...-    .           
T Consensus       535 ~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~-----~~~~D~~~~l~~~~~~~~~~----~-----------  594 (773)
T 2xau_A          535 EFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFA-----HPDGDHITLLNVYHAFKSDE----A-----------  594 (773)
T ss_dssp             GGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTC-----CTTBHHHHHHHHHHHHTSHH----H-----------
T ss_pred             ccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhcc-----CCCCcHHHHHHHHHHHHHhc----c-----------
Confidence            346889999999999876542       22222222232     12257788888887763310    0           


Q ss_pred             CccCCCCC-ccccccccccccccccHHHHHHHHHHHHHHcCCCCCCCCCCCcchhhhHHHHHHhhhhhhHH--------H
Q psy2072         202 TVSLDQED-PQWCYDNFVNYRSLKSADNVRQQLSRIMDRFNLKRSSTEFTSKDYYINIRKSLVTGFFMQDY--------Y  272 (294)
Q Consensus       202 sS~l~~~~-~~WC~~~~ln~r~L~~a~~ir~QL~~~~~~~~~~~~s~~~~~~~~~~~i~k~l~~Gff~n~A--------~  272 (294)
                          .+.+ ..||.+|||++++|++|.++|+||.+++++++++..++......+++.|++||++|||.|+|        |
T Consensus       595 ----~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~~~~~~y  670 (773)
T 2xau_A          595 ----YEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKRSGAKGY  670 (773)
T ss_dssp             ----HHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEECCC--CE
T ss_pred             ----ccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeeccCCCcc
Confidence                0123 57999999999999999999999999999999987765443444567899999999999997        4


Q ss_pred             HHhcCCcEEEEecCCccc
Q psy2072         273 INIRKSLVTGFFMQCLLG  290 (294)
Q Consensus       273 ~~~~~~~~v~ihPsS~l~  290 (294)
                      +++.+|+.|+|||+|+|.
T Consensus       671 ~~~~~~~~~~ihp~s~l~  688 (773)
T 2xau_A          671 ITVKDNQDVLIHPSTVLG  688 (773)
T ss_dssp             EETTTCCEEEECTTCCCC
T ss_pred             eEeeCCCEEEECCCcccC
Confidence            566789999999999984

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=98.02  E-value=1.3e-05  Score=80.49  Aligned_cols=132  Identities=8%  Similarity=-0.019  Sum_probs=93.2

Q ss_pred             CCCHHHHHHHHHHhh------------hccHHHHHHHhCCCChHHHHHHHhhccC---CCCccchHHHhhcccccCCCcc
Q psy2072           5 PIVIETLMSGDELRT------------DLVSLESQMATLGSDNIVCVLTTTSCFA---PRVADNLDPIAALCQRYNIPHV   69 (294)
Q Consensus         5 pP~~~~l~~a~~~L~------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~---~c~~~~~~~i~a~~~~~~~~~~   69 (294)
                      +|+...+..|++.|.            .+|++|+.|+.+|++|+.++|++.+...   .|..+ ++.|+|          
T Consensus       467 ~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~i~----------  535 (715)
T 2va8_A          467 QLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELA-YLHLLA----------  535 (715)
T ss_dssp             HHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHH-HHHHHH----------
T ss_pred             hcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHH-HHHHhh----------
Confidence            455677999999997            5899999999999999999999999887   68888 999888          


Q ss_pred             ccchhhhhhHhhhhc-cccccCChhHHHHHHHHhh---h-hcc-C-CC-------CHhHHHHHHHHHHhcCCChhhHHhh
Q psy2072          70 INNAYGLQSTRLMKL-IQEAARPNEAKKAADDAKM---R-FAH-I-DG-------DHLTLLNVYHAFKQNQEDPQWCYDN  135 (294)
Q Consensus        70 ~~~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~~~---~-f~~-~-~g-------Dhlt~l~~~~~~~~~~~~~~~C~~~  135 (294)
                                 +.+. .++++++.+.....+...+   . +.. + ..       .|+-..-++++|........+|...
T Consensus       536 -----------~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y  604 (715)
T 2va8_A          536 -----------FTPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKY  604 (715)
T ss_dssp             -----------HSTTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             -----------cCcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence                       6664 6788887665543322211   0 110 1 00       3445666778888777777899999


Q ss_pred             ccCHHHHHhHHHHHHHHHHHHHH
Q psy2072         136 FVNYRSLKSADNVRQQLSRIMDR  158 (294)
Q Consensus       136 ~L~~~aL~~a~~Ir~QL~~~l~~  158 (294)
                      ++....+..+.+....+...+.+
T Consensus       605 ~~~~gdl~~l~~~a~~l~~a~~~  627 (715)
T 2va8_A          605 NIGSGDLRNMVETMDWLTYSAYH  627 (715)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhhHHHHHHHHHHHHHHHHH
Confidence            99888777776554444444333

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=98.01  E-value=5.8e-05  Score=75.68  Aligned_cols=121  Identities=7%  Similarity=-0.042  Sum_probs=89.4

Q ss_pred             CCCHHHHHHHHHHhh-----------hccHHHHHHHhCCCChHHHHHHHhhccC--CCCccchHHHhhcccccCCCcccc
Q psy2072           5 PIVIETLMSGDELRT-----------DLVSLESQMATLGSDNIVCVLTTTSCFA--PRVADNLDPIAALCQRYNIPHVIN   71 (294)
Q Consensus         5 pP~~~~l~~a~~~L~-----------~lT~lG~~~~~~p~~p~~~~~ll~~~~~--~c~~~~~~~i~a~~~~~~~~~~~~   71 (294)
                      ||..+.+..|++.|.           .+|++|+.|+.+|++|+.+++++.+...  .|..+ ++.|++            
T Consensus       449 ~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~i~------------  515 (702)
T 2p6r_A          449 ISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIG-ALHLIC------------  515 (702)
T ss_dssp             CCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHH-HHHHHH------------
T ss_pred             HHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHH-HHHHhh------------
Confidence            788999999999996           4899999999999999999999999988  88888 999988            


Q ss_pred             chhhhhhHhhhhc-cccccCChhHHHHHHHH-h--hhh-ccC--CC-------CHhHHHHHHHHHHhcCCChhhHHhhcc
Q psy2072          72 NAYGLQSTRLMKL-IQEAARPNEAKKAADDA-K--MRF-AHI--DG-------DHLTLLNVYHAFKQNQEDPQWCYDNFV  137 (294)
Q Consensus        72 ~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~-~--~~f-~~~--~g-------Dhlt~l~~~~~~~~~~~~~~~C~~~~L  137 (294)
                               +.+. .++++++.+ ..-.+.. +  ..+ ..+  ..       .|+-..-++++|.....-...|.++++
T Consensus       516 ---------~~~e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~  585 (702)
T 2p6r_A          516 ---------RTPDMERLTVRKTD-SWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGI  585 (702)
T ss_dssp             ---------HSTTSCCCCCCTTT-HHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTC
T ss_pred             ---------CCcccccCCCCCch-HHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCC
Confidence                     7665 568888877 3222111 1  122 111  11       455667778889876666778888888


Q ss_pred             CHHHHHhHHHH
Q psy2072         138 NYRSLKSADNV  148 (294)
Q Consensus       138 ~~~aL~~a~~I  148 (294)
                      ...-+..+.+-
T Consensus       586 ~~gdl~~i~~~  596 (702)
T 2p6r_A          586 APGDLRRIVET  596 (702)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cHHhHHHHHHH
Confidence            76666655443

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=97.71  E-value=0.00011  Score=74.03  Aligned_cols=120  Identities=13%  Similarity=-0.003  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHhh-------------hccHHHHHHHhCCCChHHHHHHHhhccC----CCCccchHHHhhcccccCCC
Q psy2072           5 PIVIETLMSGDELRT-------------DLVSLESQMATLGSDNIVCVLTTTSCFA----PRVADNLDPIAALCQRYNIP   67 (294)
Q Consensus         5 pP~~~~l~~a~~~L~-------------~lT~lG~~~~~~p~~p~~~~~ll~~~~~----~c~~~~~~~i~a~~~~~~~~   67 (294)
                      +|..+.+..|++.|.             .+|++|+.|+.+|++|..+++++.+...    +|..+ ++.|+|        
T Consensus       450 ~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~--------  520 (720)
T 2zj8_A          450 YSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIG-IFHLIS--------  520 (720)
T ss_dssp             HHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHH-HHHHHH--------
T ss_pred             HHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHH-HHHHhc--------
Confidence            344578899999886             4799999999999999999999999887    89999 999999        


Q ss_pred             ccccchhhhhhHhhhhc-cccccCChhHHHHHHHHhh---hh----ccCCC----------CHhHHHHHHHHHHhcCCCh
Q psy2072          68 HVINNAYGLQSTRLMKL-IQEAARPNEAKKAADDAKM---RF----AHIDG----------DHLTLLNVYHAFKQNQEDP  129 (294)
Q Consensus        68 ~~~~~~~~~~~~~~ls~-~~~f~~~~~~~~~~~~~~~---~f----~~~~g----------Dhlt~l~~~~~~~~~~~~~  129 (294)
                                   +++. .++|+++.+.+...+....   .+    ....+          .++-..-++++|.....-.
T Consensus       521 -------------~~~e~~~i~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~  587 (720)
T 2zj8_A          521 -------------LTPDITPFNYSKREFERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEG  587 (720)
T ss_dssp             -------------TSTTCCCCCCCHHHHHHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred             -------------cCccccccccCHHHHHHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHH
Confidence                         8876 6788888765543322111   01    01111          2444556667787655556


Q ss_pred             hhHHhhccCHHHHHhHH
Q psy2072         130 QWCYDNFVNYRSLKSAD  146 (294)
Q Consensus       130 ~~C~~~~L~~~aL~~a~  146 (294)
                      ..+.++.+...-+..+.
T Consensus       588 ~i~~~~~~~~gdl~~~~  604 (720)
T 2zj8_A          588 EIVEKYSVEPGDIYRIV  604 (720)
T ss_dssp             HHHHHHTCCHHHHHHHH
T ss_pred             HHHHHhCCChHhHHHHH
Confidence            67777777666555543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	294
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	2e-12
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	5e-10
d1yksa2	299	c.37.1.14 (A:325-623) YFV helicase domain {Yellow	3e-07

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.6 bits (156), Expect = 2e-12
 Identities = 54/200 (27%), Positives = 88/200 (44%), Gaps = 27/200 (13%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQMATLGSDNIVCVLTTTSCFAPRVADNLDPIAALCQ 62
             P+VIE ++ GDELRTDL ++E+++  LG ++I+C+ +TT+CFAPRV D L+ +A +C 
Sbjct: 162 FEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICA 221

Query: 63  RYNIPHVINNAYGLQSTRLMKLIQEAAR-----------------------PNEAKKAAD 99
            Y+IPHV+NNAYGLQS++ M LIQ+ AR                            +   
Sbjct: 222 NYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFI 281

Query: 100 DAKMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLKSADNVRQQLSRIMDRF 159
               +           L+V                        +    +  QL ++ +  
Sbjct: 282 QDISKMYPGRASASPSLDVLITLLSLGCSGYRKLLK----ERKEMFVYLSTQLKKLAEAH 337

Query: 160 NLKRSSTEFTSKDYYINIRK 179
           N +   T        + ++ 
Sbjct: 338 NERLLQTPHNPISLAMTLKT 357

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 57.6 bits (138), Expect = 5e-10
 Identities = 34/185 (18%), Positives = 78/185 (42%), Gaps = 19/185 (10%)

Query: 3   LHPIVIETLMSGDELRTDLVSLESQM-ATLGSDNIVCVLTTTSCFAPRVADNLDPIAALC 61
           ++  ++ET++ GD +   +  +E+ +   +   N  CVL+T + F PR +D++  IA +C
Sbjct: 178 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKIC 237

Query: 62  QRYNIPHVINNAYGLQSTRLMKLIQEAARPNEAKKAADDAKMRFAHI--------DGDHL 113
           + Y+IPH+IN AY +Q+   ++ +++A +       +   K     I        D + +
Sbjct: 238 ENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI 297

Query: 114 TLLNVYHAFKQNQEDPQWCY----------DNFVNYRSLKSADNVRQQLSRIMDRFNLKR 163
             +++ +  + +                     +      S   + + L+ +  +   K 
Sbjct: 298 KEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF 357

Query: 164 SSTEF 168
              E 
Sbjct: 358 LDVES 362

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

 Score = 48.4 bits (115), Expect = 3e-07
 Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%)

Query: 90  RPNEAKKAADDAKM-RFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLK 143
            P E +   D  +  +     G    L   +   +      Q     F+ +   +
Sbjct: 246 GPEEHEILNDSGETVKCRAPGGAKKPLRPRWCDER--VSSDQSALSEFIKFAEGR 298

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	294
d1yksa2	299	YFV helicase domain {Yellow fever virus [TaxId: 11	91.42

>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.42  E-value=0.00081  Score=58.54  Aligned_cols=55  Identities=13%  Similarity=0.192  Sum_probs=37.2

Q ss_pred             cccCChhHHHHHHHH-hhhhccCCCCHhHHHHHHHHHHhcCCChhhHHhhccCHHHHH
Q psy2072          87 EAARPNEAKKAADDA-KMRFAHIDGDHLTLLNVYHAFKQNQEDPQWCYDNFVNYRSLK  143 (294)
Q Consensus        87 ~f~~~~~~~~~~~~~-~~~f~~~~gDhlt~l~~~~~~~~~~~~~~~C~~~~L~~~aL~  143 (294)
                      .|..|.+.+...+.. ...|..+.|||+++++.|  |.....+..||.+++|.+++|+
T Consensus       243 ~f~~P~e~~i~~~~~~~~~f~~~~Gd~~~L~~r~--~D~R~~sd~~~l~nFiq~a~~r  298 (299)
T d1yksa2         243 CFEGPEEHEILNDSGETVKCRAPGGAKKPLRPRW--CDERVSSDQSALSEFIKFAEGR  298 (299)
T ss_dssp             GSCSCGGGCCBCTTSCBCEEECTTSCEEECCCSS--EEGGGSSSHHHHHHHHHHHTTT
T ss_pred             eeECchhchhhhhhccccceeCCCcceeeeeeeE--ecccccCcHHHHHHHHHHHhcC
Confidence            455565543222222 346889999999998876  3333456789999999988875