Psyllid ID: psy2080

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTG
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccc
Coil and Loop (DISEMBL)
MSVSKDMILKLYKALLResskfpaynyrmYFLRRTRekfqsnknvdnneQISLLYNEGLKELEVLKRQVLISqlfkpdklVIETQmqnskdtg
Flexible Loop (DISEMBL)
MSVSKDMILKLYKAllresskfpayNYRMYFLRRTRekfqsnknvdnneqISLLYNEGLKELEVLKRQVLIsqlfkpdklvietqmqnskdtg
Low Complexity Region (SEG)
MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTG
Disordered region (IsUnstruct)
******MILKLYKALLRESSKFPAYNYRMYFLRRTREKF*****VDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVI***********
Disordered Region (DISOPRED)
****KDM*LKLYKALLRESSKFPAYNYRMYFLRRTREKFQS*******EQISLLYNEGLKELEVLKRQVLISQLFKPDKLV************
Disordered Region (DISEMBL)
MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTG
Disordered Region (DISPRO)
*****DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQM*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q8K215	91	LYR motif-containing prot	yes	N/A	0.881	0.901	0.5	3e-18
Q0VCG0	91	LYR motif-containing prot	yes	N/A	0.881	0.901	0.487	3e-17
Q9HD34	91	LYR motif-containing prot	yes	N/A	0.881	0.901	0.487	5e-17
B5FZA8	89	LYR motif-containing prot	yes	N/A	0.881	0.921	0.451	9e-16
B8JLQ0	89	LYR motif-containing prot	yes	N/A	0.903	0.943	0.428	5e-15
B5X5U9	92	LYR motif-containing prot	N/A	N/A	0.881	0.891	0.390	1e-14
Q6DCS1	89	LYR motif-containing prot	N/A	N/A	0.870	0.910	0.456	2e-14
B5XD90	84	LYR motif-containing prot	N/A	N/A	0.892	0.988	0.373	5e-14
P82116	92	Protein bcn92 OS=Drosophi	N/A	N/A	0.903	0.913	0.447	6e-14
O46098	92	Protein bcn92 OS=Drosophi	yes	N/A	0.881	0.891	0.445	1e-13

>sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKL+IE Q
Sbjct: 65 IIRRQVHIGQLYSTDKLIIENQ 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.
Mus musculus (taxid: 10090)

>sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5  SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I Q++  DKLVIE Q
Sbjct: 65 IIRRQVHIGQMYSTDKLVIENQ 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Bos taurus (taxid: 9913)

>sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5  SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          V++RQV I QL+  DKL+IE +
Sbjct: 65 VIRRQVHIGQLYSTDKLIIENR 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Homo sapiens (taxid: 9606)

>sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 58/82 (70%)

Query: 2  SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 61
          + S+  +L+LY+ALLRES +F +YNYR Y +RR R+ F+ NKN+ ++E+I  L N+    
Sbjct: 3  ASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAKAN 62

Query: 62 LEVLKRQVLISQLFKPDKLVIE 83
          LEV++RQ  I  ++  +KL+IE
Sbjct: 63 LEVIQRQGTIDHMYATEKLIIE 84

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Taeniopygia guttata (taxid: 59729)

>sp|B8JLQ0|LYRM4_DANRE LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query: 2  SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 61
          S S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN   + LL N+  + 
Sbjct: 3  SCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAREN 62

Query: 62 LEVLKRQVLISQLFKPDKLVIETQ 85
          L V+KRQV I  L+   + V+E +
Sbjct: 63 LAVIKRQVSIGHLYSAQRTVVEKE 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Danio rerio (taxid: 7955)

>sp|B5X5U9|LYM4A_SALSA LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 56/82 (68%)

Query: 2  SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 61
          + S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN + + +L N+  + 
Sbjct: 3  ACSRTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQAREN 62

Query: 62 LEVLKRQVLISQLFKPDKLVIE 83
          L V++RQV I Q++   + ++E
Sbjct: 63 LAVIRRQVSIGQMYTAQRTIVE 84

Salmo salar (taxid: 8030)

>sp|Q6DCS1|LYRM4_XENLA LYR motif-containing protein 4 OS=Xenopus laevis GN=lyrm4 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LYK +LRES +F +YNYR Y +RR R+ F+  KNVD+  +I  L +   + L 
Sbjct: 5  SRSQVLSLYKIMLRESQRFSSYNYRTYAIRRIRDAFREKKNVDDFLEIETLLHRAKENLN 64

Query: 64 VLKRQVLISQLFKPDKLVIET 84
          V++RQV I Q++   KLVIE+
Sbjct: 65 VIQRQVTIGQMYATHKLVIES 85

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Xenopus laevis (taxid: 8355)

>sp|B5XD90|LYM4B_SALSA LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 58/83 (69%)

Query: 1  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60
          M+     +L LY+ L++ES+KFP+YNYR Y LRR ++ F++N++V++ + +  L N+G  
Sbjct: 1  MAACTAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRD 60

Query: 61 ELEVLKRQVLISQLFKPDKLVIE 83
           L++++RQV I +++   K ++E
Sbjct: 61 NLDMIRRQVAIGKMYPTQKTIVE 83

Salmo salar (taxid: 8030)

>sp|P82116|BCN92_DROSU Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 1  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60
          MS  +  I  LY+ LLRES K PAYN+RMY +R+ R+ F++NK + +  +I      G +
Sbjct: 1  MSTRRQAI-TLYRNLLRESEKLPAYNFRMYAVRKIRDAFRANKAIRDFAEIDRQMEAGKQ 59

Query: 61 ELEVLKRQVLISQLFKPDKLVIETQ 85
           LE+++RQV+I  L+  DKLVIE +
Sbjct: 60 NLELIRRQVIIGHLYTADKLVIENK 84

Drosophila subobscura (taxid: 7241)

>sp|O46098|BCN92_DROME Protein bcn92 OS=Drosophila melanogaster GN=bcn92 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 55/83 (66%), Gaps = 1/83 (1%)

Query: 1  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60
          MS  +  I  LY+ LLRES K P+YN+RMY  R+ R+ F++N++  +  +I     EG +
Sbjct: 1  MSTRRQAIT-LYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQ 59

Query: 61 ELEVLKRQVLISQLFKPDKLVIE 83
           LE+++RQV+I  L+  DKLVIE
Sbjct: 60 NLELIRRQVIIGHLYSADKLVIE 82

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
149045200	91	rCG44066 [Rattus norvegicus]	0.881	0.901	0.512	3e-17
149731774	91	PREDICTED: LYR motif-containing protein	0.881	0.901	0.512	7e-17
41235733	91	LYR motif-containing protein 4 [Mus musc	0.881	0.901	0.5	1e-16
395512045	91	PREDICTED: LYR motif-containing protein	0.881	0.901	0.5	1e-16
291409405	91	PREDICTED: cDNA sequence BC034664-like [	0.881	0.901	0.512	3e-16
148708964	152	cDNA sequence BC034664 [Mus musculus]	0.881	0.539	0.5	3e-16
410958561	91	PREDICTED: LYR motif-containing protein	0.881	0.901	0.5	4e-16
354470567	199	PREDICTED: hypothetical protein LOC10076	0.838	0.391	0.512	4e-16
426250949	91	PREDICTED: LYR motif-containing protein	0.881	0.901	0.487	5e-16
403270983	91	PREDICTED: LYR motif-containing protein	0.881	0.901	0.487	9e-16

>gi|149045200|gb|EDL98286.1| rCG44066 [Rattus norvegicus]

 Score = 92.4 bits (228), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQVLI QL+  DKL+IE Q
Sbjct: 65 IIRRQVLIGQLYSTDKLIIENQ 86

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149731774|ref|XP_001489677.1| PREDICTED: LYR motif-containing protein 4-like [Equus caballus]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES  F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMLRESKHFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKL+IETQ
Sbjct: 65 IIRRQVHIGQLYSTDKLIIETQ 86

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41235733|ref|NP_958746.1| LYR motif-containing protein 4 [Mus musculus] gi|46576605|sp|Q8K215.1|LYRM4_MOUSE RecName: Full=LYR motif-containing protein 4 gi|21961516|gb|AAH34664.1| LYR motif containing 4 [Mus musculus] gi|26341318|dbj|BAC34321.1| unnamed protein product [Mus musculus] gi|51593329|gb|AAH80772.1| LYR motif containing 4 [Mus musculus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKL+IE Q
Sbjct: 65 IIRRQVHIGQLYSTDKLIIENQ 86

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395512045|ref|XP_003760258.1| PREDICTED: LYR motif-containing protein 4-like [Sarcophilus harrisii]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+ +LRES KF +YNYR Y +RR RE F+ NKNV ++ QI +L N+  + LE
Sbjct: 5  SRAQVLDLYRVMLRESGKFTSYNYRTYAIRRIREAFRENKNVKDSAQIQILVNKAKRNLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQ  IS+L+  DKL+IE Q
Sbjct: 65 IIQRQTHISELYSTDKLIIEKQ 86

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291409405|ref|XP_002721006.1| PREDICTED: cDNA sequence BC034664-like [Oryctolagus cuniculus]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 58/82 (70%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5  SRAQVLDLYRAMLRESKHFSAYNYRMYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKLVIE Q
Sbjct: 65 IIRRQVHIGQLYSTDKLVIENQ 86

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148708964|gb|EDL40910.1| cDNA sequence BC034664 [Mus musculus]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 4   SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
           S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 66  SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 125

Query: 64  VLKRQVLISQLFKPDKLVIETQ 85
           +++RQV I QL+  DKL+IE Q
Sbjct: 126 IIRRQVHIGQLYSTDKLIIENQ 147

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410958561|ref|XP_003985886.1| PREDICTED: LYR motif-containing protein 4 [Felis catus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 58/82 (70%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES  F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMLRESKHFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKL+IE Q
Sbjct: 65 IIRRQVHIGQLYSTDKLIIENQ 86

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354470567|ref|XP_003497535.1| PREDICTED: hypothetical protein LOC100764324 [Cricetulus griseus]

 Score = 88.6 bits (218), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 8   ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKR 67
           +L LY+A+LRES  F AYNYRMY +RR R+ F+ NK+V +  +I  L N+  ++LE+++R
Sbjct: 117 VLDLYRAMLRESKHFSAYNYRMYAVRRIRDAFRENKSVKDPVEIQALVNKAKRDLEIIRR 176

Query: 68  QVLISQLFKPDKLVIETQ 85
           QV I QL+  DKL+IE Q
Sbjct: 177 QVHIGQLYSTDKLIIENQ 194

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426250949|ref|XP_004019195.1| PREDICTED: LYR motif-containing protein 4 [Ovis aries]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5  SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPAEIQALVNKARRDLG 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I Q++  DKLVIE Q
Sbjct: 65 IIRRQVHIGQMYSTDKLVIENQ 86

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403270983|ref|XP_003927430.1| PREDICTED: LYR motif-containing protein 4 [Saimiri boliviensis boliviensis]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 59/82 (71%)

Query: 4  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
          S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5  SRAQVLDLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLMNKAKRDLE 64

Query: 64 VLKRQVLISQLFKPDKLVIETQ 85
          +++RQV I QL+  DKL+IE +
Sbjct: 65 IIRRQVHIGQLYSTDKLIIENR 86

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
RGD|2324607	91	Lyrm4 "LYR motif containing 4"	0.881	0.901	0.512	8.3e-19
MGI|MGI:2683538	91	Lyrm4 "LYR motif containing 4"	0.881	0.901	0.5	4.6e-18
UNIPROTKB|Q0VCG0	91	LYRM4 "LYR motif-containing pr	0.881	0.901	0.487	4.1e-17
UNIPROTKB|Q9HD34	91	LYRM4 "LYR motif-containing pr	0.881	0.901	0.487	5.3e-17
ZFIN|ZDB-GENE-081104-295	89	lyrm4 "LYR motif containing 4"	0.903	0.943	0.428	1.3e-15
ASPGD|ASPL0000074347	113	AN10584 [Emericella nidulans (	0.881	0.725	0.445	6.9e-15
DICTYBASE|DDB_G0290725	81	lyrm4 "LYR motif-containing pr	0.838	0.962	0.468	6.9e-15
UNIPROTKB|P82116	92	bcn92 "Protein bcn92" [Drosoph	0.903	0.913	0.447	2.3e-14
FB|FBgn0013432	92	bcn92 "bcn92" [Drosophila mela	0.903	0.913	0.435	4.9e-14
UNIPROTKB|F5H189	130	LYRM4 "LYR motif-containing pr	0.709	0.507	0.469	1.9e-12

RGD|2324607 Lyrm4 "LYR motif containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query:     4 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
             S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct:     5 SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query:    64 VLKRQVLISQLFKPDKLVIETQ 85
             +++RQVLI QL+  DKL+IE Q
Sbjct:    65 IIRRQVLIGQLYSTDKLIIENQ 86

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

MGI|MGI:2683538 Lyrm4 "LYR motif containing 4" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query:     4 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
             S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct:     5 SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query:    64 VLKRQVLISQLFKPDKLVIETQ 85
             +++RQV I QL+  DKL+IE Q
Sbjct:    65 IIRRQVHIGQLYSTDKLIIENQ 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0VCG0 LYRM4 "LYR motif-containing protein 4" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query:     4 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query:    64 VLKRQVLISQLFKPDKLVIETQ 85
             +++RQV I Q++  DKLVIE Q
Sbjct:    65 IIRRQVHIGQMYSTDKLVIENQ 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9HD34 LYRM4 "LYR motif-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query:     4 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query:    64 VLKRQVLISQLFKPDKLVIETQ 85
             V++RQV I QL+  DKL+IE +
Sbjct:    65 VIRRQVHIGQLYSTDKLIIENR 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-081104-295 lyrm4 "LYR motif containing 4" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query:     2 SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 61
             S S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN   + LL N+  + 
Sbjct:     3 SCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAREN 62

Query:    62 LEVLKRQVLISQLFKPDKLVIETQ 85
             L V+KRQV I  L+   + V+E +
Sbjct:    63 LAVIKRQVSIGHLYSAQRTVVEKE 86

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

ASPGD|ASPL0000074347 AN10584 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/83 (44%), Positives = 59/83 (71%)

Query:    11 LYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVL 70
             L+++LLR+SS+F  YN+R Y LRRT++ F+ +++     +I  L  EGL+ L ++KRQ +
Sbjct:    18 LFRSLLRQSSQFSNYNFREYALRRTKDAFREHQHESEERKIQELIQEGLQSLRMMKRQTV 77

Query:    71 ISQLFKPDKLVIETQMQNSKDTG 93
             ISQ ++ DKLV+E Q +  K+TG
Sbjct:    78 ISQFYQLDKLVVEGQ-KTGKETG 99

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

DICTYBASE|DDB_G0290725 lyrm4 "LYR motif-containing protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/79 (46%), Positives = 54/79 (68%)

Query:     5 KDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 64
             K ++L LY++L+RES KF +YN+R Y LRR    F+ NKN D NE   L+  + LK LE+
Sbjct:     4 KSVVLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKNKDQNETKELI-QDALKNLEM 62

Query:    65 LKRQVLISQLFKPDKLVIE 83
             +KRQ  I+ ++  +KLV+E
Sbjct:    63 VKRQAFINSMYSTNKLVVE 81

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P82116 bcn92 "Protein bcn92" [Drosophila subobscura (taxid:7241)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/85 (44%), Positives = 56/85 (65%)

Query:     1 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60
             MS  +  I  LY+ LLRES K PAYN+RMY +R+ R+ F++NK + +  +I      G +
Sbjct:     1 MSTRRQAIT-LYRNLLRESEKLPAYNFRMYAVRKIRDAFRANKAIRDFAEIDRQMEAGKQ 59

Query:    61 ELEVLKRQVLISQLFKPDKLVIETQ 85
              LE+++RQV+I  L+  DKLVIE +
Sbjct:    60 NLELIRRQVIIGHLYTADKLVIENK 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0013432 bcn92 "bcn92" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/85 (43%), Positives = 56/85 (65%)

Query:     1 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 60
             MS  +  I  LY+ LLRES K P+YN+RMY  R+ R+ F++N++  +  +I     EG +
Sbjct:     1 MSTRRQAIT-LYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQ 59

Query:    61 ELEVLKRQVLISQLFKPDKLVIETQ 85
              LE+++RQV+I  L+  DKLVIE +
Sbjct:    60 NLELIRRQVIIGHLYSADKLVIENK 84

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F5H189 LYRM4 "LYR motif-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query:     4 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 63
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query:    64 VLKRQV 69
             V++RQ+
Sbjct:    65 VIRRQM 70

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0VCG0	LYRM4_BOVIN	No assigned EC number	0.4878	0.8817	0.9010	yes	N/A
B5FZA8	LYRM4_TAEGU	No assigned EC number	0.4512	0.8817	0.9213	yes	N/A
Q6Q560	ISD11_YEAST	No assigned EC number	0.3780	0.8817	0.8723	yes	N/A
Q54FN9	LYRM4_DICDI	No assigned EC number	0.4683	0.8387	0.9629	yes	N/A
Q8K215	LYRM4_MOUSE	No assigned EC number	0.5	0.8817	0.9010	yes	N/A
Q9HD34	LYRM4_HUMAN	No assigned EC number	0.4878	0.8817	0.9010	yes	N/A
O60068	ISD11_SCHPO	No assigned EC number	0.3734	0.8817	0.8039	yes	N/A
B8JLQ0	LYRM4_DANRE	No assigned EC number	0.4285	0.9032	0.9438	yes	N/A
O46098	BCN92_DROME	No assigned EC number	0.4457	0.8817	0.8913	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	93
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	4e-18
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	9e-17

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 70.7 bits (174), Expect = 4e-18
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 8  ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 66
          +L LY+ LLR + KFP YN+R Y  RR R++F+ NK++ + E+I  L  EG K+LE+LK
Sbjct: 3  VLSLYRQLLRAARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQLELLK 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 67.2 bits (165), Expect = 9e-17
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 8  ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 64
          +L LY+ LLRE+ KFP YN R YF RR R++F+ NKN+ + E+I  L  EG K+LEV
Sbjct: 3  VLSLYRQLLREARKFPDYNAREYFRRRIRDEFRKNKNLTDPEKIEALLKEGKKQLEV 59

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG3801|consensus	94		100.0
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.83
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.76
KOG4620|consensus	80		99.25
KOG3426|consensus	124		98.52
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	98.3
KOG3466|consensus	157		98.14
KOG4100|consensus	125		97.65
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	95.47

>KOG3801|consensus

Probab=100.00  E-value=7.5e-33  Score=173.67  Aligned_cols=86  Identities=52%  Similarity=0.865  Sum_probs=83.0

Q ss_pred             CCcchHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Q psy2080           1 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKL   80 (93)
Q Consensus         1 m~~~r~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~~~~~   80 (93)
                      |.+++++|++|||.+||++++||+||||+||.+++|+.|++|++++||.+|..++++|+++|+.++||++|++||+.+++
T Consensus         2 ~~~sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY~~~kl   81 (94)
T KOG3801|consen    2 QMVSRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLYPKDKL   81 (94)
T ss_pred             CcccHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcce
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecc
Q psy2080          81 VIETQM   86 (93)
Q Consensus        81 vve~~~   86 (93)
                      |||..+
T Consensus        82 IvE~k~   87 (94)
T KOG3801|consen   82 IVEVKK   87 (94)
T ss_pred             eeeccc
Confidence            999543

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.83  E-value=2e-20  Score=109.93  Aligned_cols=61  Identities=56%  Similarity=0.970  Sum_probs=58.7

Q ss_pred             HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2080           6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK   66 (93)
Q Consensus         6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~   66 (93)
                      ++||+|||++||+|+.||++++++|++++||+.|+.|++++||++|+.+++.|++.|+.|+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999999999999999999999999999999999999999874

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.76  E-value=2e-18  Score=100.20  Aligned_cols=59  Identities=36%  Similarity=0.615  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Q psy2080           6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV   64 (93)
Q Consensus         6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~   64 (93)
                      ++||+|||++||+++.||+++.+.+++..||++|++|++++||..|+.+++.|+..|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            47999999999999999998899999999999999999999999999999999998863

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG4620|consensus

Probab=99.25  E-value=3.9e-11  Score=72.96  Aligned_cols=66  Identities=20%  Similarity=0.333  Sum_probs=57.7

Q ss_pred             cchHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Q psy2080           3 VSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNV--DNNEQISLLYNEGLKELEVLKRQV   69 (93)
Q Consensus         3 ~~r~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~--~Dp~~I~~ll~~g~~~L~~l~rq~   69 (93)
                      ..+++||+|||.+||+|+..|..+ ..-|...|+++|++|.++  .|.-.|+.|+..|+++++.+.+.-
T Consensus         6 gLQrqVlhlYR~~lraa~~Kp~~~-~~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~pe   73 (80)
T KOG4620|consen    6 GLQRQVLHLYRDLLRAARGKPGAE-ARRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSPE   73 (80)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCcc
Confidence            457899999999999999999755 445677999999999998  588999999999999999887653

>KOG3426|consensus

Probab=98.52  E-value=2.4e-07  Score=60.75  Aligned_cols=63  Identities=29%  Similarity=0.488  Sum_probs=53.6

Q ss_pred             cchHHHHHHHHHHHHHhhCC-CCchh----HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Q psy2080           3 VSKDMILKLYKALLRESSKF-PAYNY----RMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVL   65 (93)
Q Consensus         3 ~~r~~Vl~LYR~llR~a~~~-~~~n~----r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l   65 (93)
                      ..|..|+.|||...|..=.+ -+|+.    -+.++..||+.|++|.++|||.-|..|+-+|..+|..+
T Consensus        21 EARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkei   88 (124)
T KOG3426|consen   21 EARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEI   88 (124)
T ss_pred             HHHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHH
Confidence            46899999999999987552 34443    46789999999999999999999999999999988765

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=98.30  E-value=4.9e-06  Score=52.91  Aligned_cols=69  Identities=25%  Similarity=0.335  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHhhCCCCchhH-------HHHHHHH----HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2080           8 ILKLYKALLRESSKFPAYNYR-------MYFLRRT----REKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFK   76 (93)
Q Consensus         8 Vl~LYR~llR~a~~~~~~n~r-------~y~~~~i----r~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~~~y~   76 (93)
                      |++|||.+||+.+.++.....       ..+..+|    +++|+.+++.+++......+...+.-+.+|+.|.....+..
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr~y~eL~e   80 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQREYKELLE   80 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999998753211       5677788    99999999999999999999999999999999987665543

>KOG3466|consensus

Probab=98.14  E-value=8.7e-06  Score=55.28  Aligned_cols=63  Identities=25%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cchHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Q psy2080           3 VSKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK   66 (93)
Q Consensus         3 ~~r~~Vl~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~   66 (93)
                      +.+++|..|||++||.--.|-. .|.-.|+.-.||..|.+|++ .|..++..||+.|+++|-..+
T Consensus        11 shkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r   74 (157)
T KOG3466|consen   11 SHKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR   74 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence            4689999999999999998754 44556788899999999998 999999999999999886654

>KOG4100|consensus

Probab=97.65  E-value=0.00054  Score=45.18  Aligned_cols=65  Identities=23%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2080           6 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLIS   72 (93)
Q Consensus         6 ~~Vl~LYR~llR~a~~~~~~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll~~g~~~L~~l~rq~~i~   72 (93)
                      ..|.-|||++||.-+-.|. ..|.-=-..++++|+.|+++ +|..+.-++.+=+....+|..|.-++
T Consensus        10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~   74 (125)
T KOG4100|consen   10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSA   74 (125)
T ss_pred             chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            4566699999999999996 56666667899999999999 89999999998888887777765543

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=95.47  E-value=0.11  Score=30.09  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=46.1

Q ss_pred             chHHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHHHHhhcCCCCCHHHHHHHH
Q psy2080           4 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLY   55 (93)
Q Consensus         4 ~r~~Vl~LYR~llR~a~~~~~-~n~r~y~~~~ir~~Fr~nk~~~Dp~~I~~ll   55 (93)
                      .+.....||.++|+.-..+|. ..||.+.-.-++.-+.-.....|.++|+..|
T Consensus         3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            467889999999999999995 5699999999999999998899999998765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
4b6x_A	90	AVRRPS4, avirulence protein; toxin, type 3 secrete	89.58

>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}

Probab=89.58  E-value=1.4  Score=26.57  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHhhcCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q psy2080          27 YRMYFLRRTREKFQSNKNVDNNEQIS---LLYNEGLKELEVLKRQVLISQ   73 (93)
Q Consensus        27 ~r~y~~~~ir~~Fr~nk~~~Dp~~I~---~ll~~g~~~L~~l~rq~~i~~   73 (93)
                      -.+-+...++++..+..+..+|.+|.   .+|..++.+|..|.|+.+|..
T Consensus        33 DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g   82 (90)
T 4b6x_A           33 DKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLR   82 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567778899999999999999885   599999999999999988753

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00