Psyllid ID: psy2081

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MTGYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
cccccEEEEEccccccccccccccEEEEccEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEEcccccccEEEccccHHHHHHHHHccEEEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHcccccEEccccccEEEEEEEEcEEccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEHHHcccccccccccccccccccHHHHHHHHcccccccEEccEEEEEccccccccccEEEEEEEEc
cccEEEEEEHccHccccHHcccccEEEEcccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccEEEEEEccHHHHHHHcccccccHHHHHHHccEEEEEccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHccccccccHHHccccccEEEEEEEEEcccHHHHHHHHHHHHHHcHHHHHHHHccccEEEEEEEEEccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEEEEEcccccccccccccccccccHHHHHHHHccccccEEEEcEEEEEEccccccccEEEEEEEEcc
MTGYLGVYAQRTKHlfdydvvnpkieiidgrryrvnpswpstyedkseadpyqrseydagcpggnqpyeeddgglsededldiylgkdgqykyqchipksfypfiigvkgstkrriesetntqlsiprqgqtgdIIISSYSERGIASAKRRLDLLLVFARkkipythllsipmnvpniQENFAKFKATVLsdfsrcrgieeslfqepgrlHITMGMLMLADSVERDQAVEVLQKCgnniilpilrSQRIKINLkgleimnddpaEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSkyrmrqnpssdtnsekrstFNAKDILEslgdfefgETFVYCVHLsqrhthdmdgyfkpsavisl
MTGYLGVyaqrtkhlfdydvvnpkieiidgrryrvnpswpstyedkseadpYQRSEYDAGCPGGNQPYEEDDGGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESetntqlsiprqgqtgDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEEslfqepgrlHITMGMLMLADSVERDQAVEVLQKcgnniilpilrsQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNskyrmrqnpssdtnsekrstFNAKDILESLGDFEFGETFVYCVHLSQRhthdmdgyfKPSAVISL
MTGYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYeeddgglsededldIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
***YLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNP*******************************************LDIYLGKDGQYKYQCHIPKSFYPFIIGVKG**********************GDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMN***********************KDILESLGDFEFGETFVYCVHLSQRHTHDMDGYF********
**GYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWP************************************************GQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIP**************ERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKA***S**SRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNS********************NAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
MTGYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWP*************RSEYDAGCPGGNQPYEEDDGGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYR**************STFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
*TGYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWP********************CPGGN*******GGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQ**********RSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
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MTGYLGVYAQRTKHLFDYDVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSEDEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
Q9D8Z1356 Activating signal cointeg yes N/A 0.881 0.941 0.345 2e-55
Q8N9N2400 Activating signal cointeg no N/A 0.847 0.805 0.343 3e-48
>sp|Q9D8Z1|ASCC1_MOUSE Activating signal cointegrator 1 complex subunit 1 OS=Mus musculus GN=Ascc1 PE=2 SV=1 Back     alignment and function desciption
 Score =  216 bits (550), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/365 (34%), Positives = 196/365 (53%), Gaps = 30/365 (8%)

Query: 19  DVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSED 78
           DV+ P+I   DGR YR NP     Y+ + + D Y  S   +  P G     +   G    
Sbjct: 2   DVLRPQIVTFDGRNYRKNPIQEKQYQHEEDEDFYPDSMEYSDEPCGAYEVAQTPHG---- 57

Query: 79  EDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIIS 138
                       ++     P   Y  I+G +G TK++IE ET T ++IP+ G  G+I+I+
Sbjct: 58  ------------FRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKHGHEGEIVIT 105

Query: 139 SYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRG 198
                G+ SA+ R+D+LL   R++ P+TH LS  +N   +QE F  F+  VL   S+ RG
Sbjct: 106 GQHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFLNEVEVQERFLMFQEEVLRKCSKDRG 165

Query: 199 IEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEI 258
           ++ ++FQ P +LH+T+GML+L    E  Q  E+LQ+C    I  I   + +++ + G+E 
Sbjct: 166 VDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGRPLEVEMAGIEY 225

Query: 259 MNDDPAEVDILYAKV--VDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNS 316
           MNDDPA VD+LYAKV   D S  +Q+L D V++ F S  LI K   ++ +VK+H T+MN+
Sbjct: 226 MNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSLGLIVK---EWTSVKLHATVMNT 282

Query: 317 KYRMRQNPSSDTN---------SEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHD 367
             R   N     N          ++R +F+ ++IL++  +F FG   +  +H+SQR T D
Sbjct: 283 LLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLRLNSIHISQRFTVD 342

Query: 368 MDGYF 372
             G +
Sbjct: 343 SFGNY 347
Enhances NF-kappa-B, SRF and AP1 transactivation.
Mus musculus (taxid: 10090)
>sp|Q8N9N2|ASCC1_HUMAN Activating signal cointegrator 1 complex subunit 1 OS=Homo sapiens GN=ASCC1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
345497703352 PREDICTED: activating signal cointegrato 0.902 0.974 0.384 4e-69
158285426349 AGAP007571-PA [Anopheles gambiae str. PE 0.907 0.988 0.378 2e-67
380018911349 PREDICTED: activating signal cointegrato 0.892 0.971 0.389 2e-65
350421467355 PREDICTED: activating signal cointegrato 0.907 0.971 0.373 5e-65
383860106353 PREDICTED: activating signal cointegrato 0.913 0.983 0.366 9e-65
170042361350 conserved hypothetical protein [Culex qu 0.902 0.98 0.377 1e-64
328790625349 PREDICTED: activating signal cointegrato 0.892 0.971 0.389 1e-64
291239743358 PREDICTED: CG12129-like [Saccoglossus ko 0.892 0.946 0.374 4e-61
157128143358 hypothetical protein AaeL_AAEL011050 [Ae 0.902 0.958 0.361 9e-61
449504729353 PREDICTED: activating signal cointegrato 0.881 0.949 0.364 9e-60
>gi|345497703|ref|XP_001601510.2| PREDICTED: activating signal cointegrator 1 complex subunit 1-like [Nasonia vitripennis] Back     alignment and taxonomy information
 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 141/367 (38%), Positives = 224/367 (61%), Gaps = 24/367 (6%)

Query: 19  DVVNPKIEIIDGRRYRVNPSWPSTYEDKSEADPYQRSEYDAGCPGGNQPYEEDDGGLSE- 77
           D++ P++  ++GR YR               D +  S+         + YE D G   E 
Sbjct: 3   DILEPELVWVEGRCYRF-------------CDKFAWSQGKEIASYVEESYEPDYGSNDEE 49

Query: 78  --DEDLDIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDI 135
             D  ++I   +  +YK+  H+  +F+ FIIG KG+T +R+ ++TNT +S+P+ GQ GDI
Sbjct: 50  SCDASIEIVPSRGNRYKHSFHVNSNFFRFIIGAKGATLKRMAADTNTLISVPKLGQDGDI 109

Query: 136 IISSYSERGIASAKRRLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSR 195
           +I+  S R I +A+RR+D+L+  +R K+ +TH +SIP N   I+ENF KFK  +L + S 
Sbjct: 110 VITGVSRRDIMAARRRIDILIETSRSKLEFTHFVSIPGNSDEIKENFKKFKDEILRNCST 169

Query: 196 -CRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQR-IKINL 253
             RG++E +FQ+P RLH+T+ ML+L D  +R +A+EVL+ C   +++P L+    I I  
Sbjct: 170 GVRGLKEEIFQKPERLHLTLIMLVLLDEEDRKKAIEVLEICKEQVVIPTLKKNGPITIEF 229

Query: 254 KGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTL 313
           KG++IMNDDP+EV++LY +  D +G +QK+ DD+  YFI + L  +   +YD VK+H+T 
Sbjct: 230 KGVQIMNDDPSEVEVLYIQAHDTTGCLQKISDDIADYFIDRGLTRR---QYDKVKLHMTA 286

Query: 314 MNSKYRMRQNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFK 373
           MNS++     P       KR TF+A +IL++  +F FG+  +  +HLSQRHT   DG+++
Sbjct: 287 MNSQF---LKPEIQEYHRKRETFDATNILKTYENFYFGKMALSTIHLSQRHTRSKDGFYQ 343

Query: 374 PSAVISL 380
            +A I L
Sbjct: 344 STAKIEL 350

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|158285426|ref|XP_001687889.1| AGAP007571-PA [Anopheles gambiae str. PEST] gi|157019986|gb|EDO64538.1| AGAP007571-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|380018911|ref|XP_003693362.1| PREDICTED: activating signal cointegrator 1 complex subunit 1-like [Apis florea] Back     alignment and taxonomy information
>gi|350421467|ref|XP_003492852.1| PREDICTED: activating signal cointegrator 1 complex subunit 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383860106|ref|XP_003705532.1| PREDICTED: activating signal cointegrator 1 complex subunit 1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|170042361|ref|XP_001848897.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865857|gb|EDS29240.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328790625|ref|XP_623774.2| PREDICTED: activating signal cointegrator 1 complex subunit 1-like [Apis mellifera] Back     alignment and taxonomy information
>gi|291239743|ref|XP_002739781.1| PREDICTED: CG12129-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|157128143|ref|XP_001661326.1| hypothetical protein AaeL_AAEL011050 [Aedes aegypti] gi|108872675|gb|EAT36900.1| AAEL011050-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|449504729|ref|XP_002195179.2| PREDICTED: activating signal cointegrator 1 complex subunit 1 [Taeniopygia guttata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
UNIPROTKB|F1NT55354 ASCC1 "Uncharacterized protein 0.728 0.782 0.389 3.8e-53
ZFIN|ZDB-GENE-050417-80353 ascc1 "activating signal coint 0.897 0.966 0.343 6.3e-53
UNIPROTKB|F5H874379 ASCC1 "Activating signal coint 0.881 0.883 0.346 3.1e-51
UNIPROTKB|Q0IIJ9357 ASCC1 "Uncharacterized protein 0.884 0.941 0.339 8.3e-51
UNIPROTKB|I3L6H8357 ASCC1 "Uncharacterized protein 0.884 0.941 0.334 9.5e-50
UNIPROTKB|E2RKL0357 ASCC1 "Uncharacterized protein 0.884 0.941 0.331 2e-49
RGD|1359255356 Ascc1 "activating signal coint 0.715 0.764 0.377 3.2e-49
UNIPROTKB|Q8N9N2400 ASCC1 "Activating signal coint 0.623 0.592 0.382 4.2e-49
MGI|MGI:1916340356 Ascc1 "activating signal coint 0.715 0.764 0.377 4.7e-48
UNIPROTKB|I3LBQ6407 ASCC1 "Uncharacterized protein 0.815 0.761 0.333 1.3e-45
UNIPROTKB|F1NT55 ASCC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 114/293 (38%), Positives = 181/293 (61%)

Query:    93 YQCHI--PKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYSERGIASAKR 150
             +QC +  P   Y +IIG KG TK+RIE+ET T +SIP+ G  G+I+I+     G+ SA+ 
Sbjct:    56 FQCRVEVPSPLYKYIIGKKGETKKRIETETRTSISIPKPGLEGEIVITGQQRGGVISART 115

Query:   151 RLDLLLVFARKKIPYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRL 210
             R+D+LL   RKK P+TH LS  +N P +QE F +FK  VL   S+  G+  SLFQ P +L
Sbjct:   116 RIDVLLDSFRKKQPFTHFLSFALNQPVVQEKFLQFKEEVLEKCSQDHGVSSSLFQNPAKL 175

Query:   211 HITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILY 270
             H+T+G L+L +  E  +A ++LQ+C  + +  I   + + + + G+E MNDDPA +D+LY
Sbjct:   176 HLTLGTLVLLNEQEIQRACDLLQQCKEDFVDQITGGKPLSVEVAGVEYMNDDPAMMDVLY 235

Query:   271 AKV--VDDSGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDT 328
             AKV   D S  +Q + D +V+ F++  L+ +   ++D VK+H T+MN+ +R   + +++ 
Sbjct:   236 AKVHMKDGSDKLQVIADQLVEKFVASGLMLR---EWDRVKLHATVMNTLFRKDPSGAAEE 292

Query:   329 NS---------EKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYF 372
              S         ++R +FN ++IL+   +F FGE  +  V LSQR++ D  GY+
Sbjct:   293 RSSTVSGKSSFKERESFNGRNILKLFENFSFGEVQLDAVLLSQRYSSDASGYY 345
GO:0003723 "RNA binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA
ZFIN|ZDB-GENE-050417-80 ascc1 "activating signal cointegrator 1 complex subunit 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F5H874 ASCC1 "Activating signal cointegrator 1 complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IIJ9 ASCC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6H8 ASCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2RKL0 ASCC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359255 Ascc1 "activating signal cointegrator 1 complex subunit 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q8N9N2 ASCC1 "Activating signal cointegrator 1 complex subunit 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916340 Ascc1 "activating signal cointegrator 1 complex subunit 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LBQ6 ASCC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9D8Z1ASCC1_MOUSENo assigned EC number0.34520.88150.9410yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
pfam10469205 pfam10469, AKAP7_NLS, AKAP7 2'5' RNA ligase-like d 1e-55
PLN00108257 PLN00108, PLN00108, unknown protein; Provisional 1e-20
cd0239462 cd02394, vigilin_like_KH, K homology RNA-binding d 2e-11
cd0010564 cd00105, KH-I, K homology RNA-binding domain, type 6e-07
pfam0001359 pfam00013, KH_1, KH domain 6e-06
smart0032268 smart00322, KH, K homology RNA-binding domain 9e-06
PRK13763180 PRK13763, PRK13763, putative RNA-processing protei 4e-04
>gnl|CDD|220770 pfam10469, AKAP7_NLS, AKAP7 2'5' RNA ligase-like domain Back     alignment and domain information 
 Score =  181 bits (461), Expect = 1e-55
 Identities = 84/220 (38%), Positives = 128/220 (58%), Gaps = 19/220 (8%)

Query: 165 YTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVE 224
            TH LSIP+N P I+E   +F+ +VLS   +  G++ESLF  P +LH+T+ +L+L D  E
Sbjct: 1   PTHFLSIPLNSPEIRERLKEFQESVLS---QDPGLDESLFIPPEKLHLTLLVLVLLDQEE 57

Query: 225 RDQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDD-SGLVQKL 283
            + A E LQ+C   I   +     +++  KGLE  NDDPA V +LYAKV +D S  +QK+
Sbjct: 58  VEAAKEALQECKEEIKDILGNP--LELRFKGLETFNDDPA-VRVLYAKVEEDGSPRLQKI 114

Query: 284 CDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYR--MRQNPSSDTNSEKRSTFNAKDI 341
            D +++ F+ + L++K   +   VK+H+TLM ++Y    ++          R +F+A +I
Sbjct: 115 ADRLLRAFVEKGLLAKDNNE-FDVKLHLTLMKTRYAPKKKKK--------GRESFDAPEI 165

Query: 342 LESLGDFEFGETFVYCVHLSQRHTHD-MDGYFKPSAVISL 380
           LE  GDF+FGE  V  +HL    + D  DGY+     I L
Sbjct: 166 LEDFGDFDFGEQKVNEIHLCSMGSTDSSDGYYHTEGSIPL 205

AKAP7_NLS is the N-terminal domain of the cyclic AMP-dependent protein kinase A, PKA, anchor protein AKAP7. This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes. AKAP7_NLS carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein. Binding to the regulatory subunits RI and RII of PKA is mediated via the family AKAP7_RIRII_bdg. at the C-terminus. This family represents a region that contains two 2'5' RNA ligase like domains pfam02834. Presumably this domain carried out some as yet unknown enzymatic function. Length = 205
>gnl|CDD|177724 PLN00108, PLN00108, unknown protein; Provisional Back     alignment and domain information
>gnl|CDD|239087 cd02394, vigilin_like_KH, K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>gnl|CDD|238053 cd00105, KH-I, K homology RNA-binding domain, type I Back     alignment and domain information
>gnl|CDD|215657 pfam00013, KH_1, KH domain Back     alignment and domain information
>gnl|CDD|197652 smart00322, KH, K homology RNA-binding domain Back     alignment and domain information
>gnl|CDD|237494 PRK13763, PRK13763, putative RNA-processing protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
KOG2814|consensus345 100.0
PLN00108257 unknown protein; Provisional 100.0
PF10469209 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte 100.0
COG1514180 LigT 2'-5' RNA ligase [Translation, ribosomal stru 99.96
TIGR02258179 2_5_ligase 2'-5' RNA ligase. This protein family c 99.95
PRK15124176 2'-5' RNA ligase; Provisional 99.95
PRK13679168 hypothetical protein; Provisional 99.76
PHA02574149 57B hypothetical protein; Provisional 99.7
PF13563153 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB 99.38
cd0239361 PNPase_KH Polynucleotide phosphorylase (PNPase) K 99.37
cd0239462 vigilin_like_KH K homology RNA-binding domain_vigi 99.31
PF05213248 Corona_NS2A: Coronavirus NS2A protein; InterPro: I 99.25
PF0001360 KH_1: KH domain syndrome, contains KH motifs.; Int 99.21
PF0283487 LigT_PEase: LigT like Phosphoesterase; InterPro: I 99.09
cd0010564 KH-I K homology RNA-binding domain, type I. KH bin 99.04
cd02395120 SF1_like-KH Splicing factor 1 (SF1) K homology RNA 98.91
smart0032269 KH K homology RNA-binding domain. 98.88
cd0239665 PCBP_like_KH K homology RNA-binding domain, PCBP_l 98.87
PF1301443 KH_3: KH domain 98.76
PRK13763180 putative RNA-processing protein; Provisional 98.61
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.5
KOG1676|consensus600 98.47
TIGR02696719 pppGpp_PNP guanosine pentaphosphate synthetase I/p 98.45
KOG0119|consensus 554 98.23
TIGR03591684 polynuc_phos polyribonucleotide nucleotidyltransfe 98.22
PRK13763180 putative RNA-processing protein; Provisional 98.2
TIGR03665172 arCOG04150 arCOG04150 universal archaeal KH domain 98.17
COG1185692 Pnp Polyribonucleotide nucleotidyltransferase (pol 97.93
PLN00207891 polyribonucleotide nucleotidyltransferase; Provisi 97.9
PRK04163235 exosome complex RNA-binding protein Rrp4; Provisio 97.9
KOG2191|consensus402 97.89
KOG1676|consensus 600 97.84
COG5176269 MSL5 Splicing factor (branch point binding protein 97.8
KOG1588|consensus259 97.78
KOG2113|consensus394 97.77
KOG2193|consensus584 97.72
PRK11824693 polynucleotide phosphorylase/polyadenylase; Provis 97.58
KOG2192|consensus390 97.51
PF09749239 HVSL: Uncharacterised conserved protein; InterPro: 97.44
KOG2191|consensus402 97.41
COG1094194 Predicted RNA-binding protein (contains KH domains 97.39
KOG2190|consensus485 97.29
COG1094194 Predicted RNA-binding protein (contains KH domains 97.27
KOG0336|consensus 629 97.18
KOG2208|consensus 753 97.05
PF07823196 CPDase: Cyclic phosphodiesterase-like protein; Int 97.01
PF0283487 LigT_PEase: LigT like Phosphoesterase; InterPro: I 96.94
KOG2193|consensus584 96.91
TIGR03319514 YmdA_YtgF conserved hypothetical protein YmdA/YtgF 96.68
PRK12704520 phosphodiesterase; Provisional 96.62
PRK00106535 hypothetical protein; Provisional 96.6
KOG1067|consensus760 96.49
COG1097239 RRP4 RNA-binding protein Rrp4 and related proteins 96.14
cd0213461 NusA_KH NusA_K homology RNA-binding domain (KH). N 96.04
KOG2192|consensus390 95.75
PRK12705508 hypothetical protein; Provisional 95.27
KOG2190|consensus 485 93.91
KOG2814|consensus345 93.23
PF14611210 SLS: Mitochondrial inner-membrane-bound regulator 93.01
KOG2113|consensus394 92.75
KOG2208|consensus753 91.85
PRK0282177 hypothetical protein; Provisional 91.41
PRK0046875 hypothetical protein; Provisional 90.98
TIGR03223228 Phn_opern_protn putative phosphonate metabolism pr 90.94
KOG3273|consensus252 90.22
cd0240968 KH-II KH-II (K homology RNA-binding domain, type I 89.97
PRK0106478 hypothetical protein; Provisional 89.53
COG183776 Predicted RNA-binding protein (contains KH domain) 89.42
COG1855604 ATPase (PilT family) [General function prediction 89.07
PRK13764602 ATPase; Provisional 88.09
KOG2279|consensus 608 87.75
PRK08406140 transcription elongation factor NusA-like protein; 87.32
KOG2874|consensus356 87.08
cd0241381 40S_S3_KH K homology RNA-binding (KH) domain of th 85.31
PF1308373 KH_4: KH domain; PDB: 3GKU_B. 85.14
PF1318469 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW 84.21
PRK08406140 transcription elongation factor NusA-like protein; 83.86
cd0241477 jag_KH jag_K homology RNA-binding domain. The KH d 82.82
TIGR01952141 nusA_arch NusA family KH domain protein, archaeal. 81.22
>KOG2814|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.5e-56  Score=421.45  Aligned_cols=285  Identities=33%  Similarity=0.554  Sum_probs=259.0

Q ss_pred             ceEEEEEcCCCCcceeeCCCCchHHHHHHHhCceEEcCCCCC-CCcEEEeeCCHHHHHHHHHHHHHHhhhhcccCCccee
Q psy2081          90 QYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQ-TGDIIISSYSERGIASAKRRLDLLLVFARKKIPYTHL  168 (380)
Q Consensus        90 ~~~~~v~Vp~~~~~~IIG~~G~t~k~ie~eT~~~I~ip~~~~-~~~i~I~g~~~~~v~~A~~~I~~iv~~~rkk~~~thF  168 (380)
                      .|..+++|+++|++.|||++|.|+++||+||+|+|-+|++++ .+.|+|+|.++.+|.+|.+||..++++.|++.|+|||
T Consensus        56 ~~~~si~v~s~~~~~lig~~g~trkkle~Etq~~i~lp~p~~n~~~i~i~~~~~~~V~~a~~Ri~~~ids~r~s~p~thf  135 (345)
T KOG2814|consen   56 DFSSSILVRSSFIGWLIGKQGKTRKKLEEETQTNIFLPRPNTNKEEIKIIGISRNCVIQALERIAKLIDSDRKSFPITHF  135 (345)
T ss_pred             cchhhhhhhHHHhhhhhcccchHHHHHHHhhccceEccCCCCCcceEEEeehhHHHHHHHHHHHHHHHHhhhhcCchhhh
Confidence            599999999999999999999999999999999999999995 5899999999999999999999999999999999999


Q ss_pred             eeccCCChhHHHHHHHHHHHHhcccC-cCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhcccccccccccC
Q psy2081         169 LSIPMNVPNIQENFAKFKATVLSDFS-RCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPILRSQ  247 (380)
Q Consensus       169 IaIpl~~~~I~~~~~~fq~~v~~~~~-~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~~~~  247 (380)
                      +|+|++..+|++.|..|++.....++ ...|++.+.|++|..+||||+|+.++++++|++|++.|+.+.+++. ...+..
T Consensus       136 lal~lne~eVqe~f~~fke~~~~~esl~~~g~~~s~F~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~-~~~~~k  214 (345)
T KOG2814|consen  136 LALPLNEHEVQEGFLAFKELKPFIESLLDGGIDKSLFQGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIR-IDVGEK  214 (345)
T ss_pred             hhhhcchHHHHHHHHHHHhhhhhHHHhhccchhhccccCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHH-hccCCC
Confidence            99999987999999999944333222 3567999999999999999999999999999999999999854443 455679


Q ss_pred             ceEEEecceecCCCCCCceeEEEEEecC--ChHHHHHHH-HHHHHHHHHCCCccccccCCCceeeEEEeecccccccCCC
Q psy2081         248 RIKINLKGLEIMNDDPAEVDILYAKVVD--DSGLVQKLC-DDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNP  324 (380)
Q Consensus       248 pf~l~l~Glg~F~ddp~~~rVLya~v~d--~~~~Lq~L~-~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~~~~  324 (380)
                      |+.+.++|+++|||+|..++||||+|++  ....|+..+ +.|..+|.++|+..   ++++++++|+||||++||+.+. 
T Consensus       215 p~~i~lkG~~~mnddP~~~kVLYAkv~~~~~e~~l~~~~~~~i~~~f~~~~li~---k~~~~~kLH~TvmNsryrk~~~-  290 (345)
T KOG2814|consen  215 PLFIDLKGLDKMNDDPSLTKVLYAKVEPDDYEKFLQHRCGERILERFVASGLIK---KESSSLKLHCTVMNSRYRKNGG-  290 (345)
T ss_pred             ceeeeccchhhhcCCHhHheeeeeeccCcchHHHHHHHHHHHHHHHHHHhcchh---ccccccEEEEEEehhhhhhcCC-
Confidence            9999999999999999999999999993  357888888 99999999999999   7999999999999999998754 


Q ss_pred             CCCCCccccCcCCHHHHHHHhCCceeceEEeeEEEEEEeeecCCCCceeeeEEEeC
Q psy2081         325 SSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRHTHDMDGYFKPSAVISL  380 (380)
Q Consensus       325 ~~~~~~~~r~~fda~~il~~~~~~~fG~~~v~~I~L~~s~~~~~~g~Y~~~~~i~L  380 (380)
                       .++..+....||+++||+.|++|.||++.+.++|+++....+++|||.+.++++|
T Consensus       291 -~~g~~K~~~~Fdar~ilk~fg~f~fg~~~~~eih~~~~~~~d~ng~y~~~gsi~f  345 (345)
T KOG2814|consen  291 -EPGLVKESESFDAREILKAFGQFLFGELKLQEIHLSVRFAADQNGNYNECGSIPF  345 (345)
T ss_pred             -CcchhhHhhhccHHHHHHHHhhHhHhhcccceeeeeeeeccccccchhhhcCCCC
Confidence             3333466778999999999999999999999999999999999999999999987

>PLN00108 unknown protein; Provisional Back     alignment and domain information
>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7 Back     alignment and domain information
>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR02258 2_5_ligase 2'-5' RNA ligase Back     alignment and domain information
>PRK15124 2'-5' RNA ligase; Provisional Back     alignment and domain information
>PRK13679 hypothetical protein; Provisional Back     alignment and domain information
>PHA02574 57B hypothetical protein; Provisional Back     alignment and domain information
>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A Back     alignment and domain information
>cd02393 PNPase_KH Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH) Back     alignment and domain information
>cd02394 vigilin_like_KH K homology RNA-binding domain_vigilin_like Back     alignment and domain information
>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins Back     alignment and domain information
>PF00013 KH_1: KH domain syndrome, contains KH motifs Back     alignment and domain information
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases Back     alignment and domain information
>cd00105 KH-I K homology RNA-binding domain, type I Back     alignment and domain information
>cd02395 SF1_like-KH Splicing factor 1 (SF1) K homology RNA-binding domain (KH) Back     alignment and domain information
>smart00322 KH K homology RNA-binding domain Back     alignment and domain information
>cd02396 PCBP_like_KH K homology RNA-binding domain, PCBP_like Back     alignment and domain information
>PF13014 KH_3: KH domain Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polynucleotide phosphorylase Back     alignment and domain information
>KOG0119|consensus Back     alignment and domain information
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase Back     alignment and domain information
>PRK13763 putative RNA-processing protein; Provisional Back     alignment and domain information
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein Back     alignment and domain information
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN00207 polyribonucleotide nucleotidyltransferase; Provisional Back     alignment and domain information
>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional Back     alignment and domain information
>KOG2191|consensus Back     alignment and domain information
>KOG1676|consensus Back     alignment and domain information
>COG5176 MSL5 Splicing factor (branch point binding protein) [RNA processing and modification] Back     alignment and domain information
>KOG1588|consensus Back     alignment and domain information
>KOG2113|consensus Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Back     alignment and domain information
>KOG2192|consensus Back     alignment and domain information
>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans Back     alignment and domain information
>KOG2191|consensus Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG2190|consensus Back     alignment and domain information
>COG1094 Predicted RNA-binding protein (contains KH domains) [General function prediction only] Back     alignment and domain information
>KOG0336|consensus Back     alignment and domain information
>KOG2208|consensus Back     alignment and domain information
>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes Back     alignment and domain information
>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases Back     alignment and domain information
>KOG2193|consensus Back     alignment and domain information
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF Back     alignment and domain information
>PRK12704 phosphodiesterase; Provisional Back     alignment and domain information
>PRK00106 hypothetical protein; Provisional Back     alignment and domain information
>KOG1067|consensus Back     alignment and domain information
>COG1097 RRP4 RNA-binding protein Rrp4 and related proteins (contain S1 domain and KH domain) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd02134 NusA_KH NusA_K homology RNA-binding domain (KH) Back     alignment and domain information
>KOG2192|consensus Back     alignment and domain information
>PRK12705 hypothetical protein; Provisional Back     alignment and domain information
>KOG2190|consensus Back     alignment and domain information
>KOG2814|consensus Back     alignment and domain information
>PF14611 SLS: Mitochondrial inner-membrane-bound regulator Back     alignment and domain information
>KOG2113|consensus Back     alignment and domain information
>KOG2208|consensus Back     alignment and domain information
>PRK02821 hypothetical protein; Provisional Back     alignment and domain information
>PRK00468 hypothetical protein; Provisional Back     alignment and domain information
>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein Back     alignment and domain information
>KOG3273|consensus Back     alignment and domain information
>cd02409 KH-II KH-II (K homology RNA-binding domain, type II) Back     alignment and domain information
>PRK01064 hypothetical protein; Provisional Back     alignment and domain information
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only] Back     alignment and domain information
>COG1855 ATPase (PilT family) [General function prediction only] Back     alignment and domain information
>PRK13764 ATPase; Provisional Back     alignment and domain information
>KOG2279|consensus Back     alignment and domain information
>PRK08406 transcription elongation factor NusA-like protein; Validated Back     alignment and domain information
>KOG2874|consensus Back     alignment and domain information
>cd02413 40S_S3_KH K homology RNA-binding (KH) domain of the eukaryotic 40S small ribosomal subunit protein S3 Back     alignment and domain information
>PF13083 KH_4: KH domain; PDB: 3GKU_B Back     alignment and domain information
>PF13184 KH_5: NusA-like KH domain; PDB: 1HH2_P 1L2F_A 2ATW_A 1K0R_B 2ASB_A Back     alignment and domain information
>PRK08406 transcription elongation factor NusA-like protein; Validated Back     alignment and domain information
>cd02414 jag_KH jag_K homology RNA-binding domain Back     alignment and domain information
>TIGR01952 nusA_arch NusA family KH domain protein, archaeal Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
2vfk_A205 AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom 2e-35
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 8e-14
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 5e-11
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 1e-09
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 1e-09
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 3e-09
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 5e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2dgr_A83 Ring finger and KH domain-containing protein 1; st 3e-06
3n89_A376 Defective in GERM LINE development protein 3, ISO; 4e-05
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 2e-04
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A Length = 205 Back     alignment and structure
 Score =  128 bits (322), Expect = 2e-35
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 23/218 (10%)

Query: 166 THLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVER 225
            + LSIP+    I       + ++L   +R            G  HIT+ ++ L +  E 
Sbjct: 4   NYFLSIPITNKKITAGIKVLQNSILRQDNRLTK----AMVGDGSFHITLLVMQLLNEDEV 59

Query: 226 DQAVEVLQKCGNNIILPILRSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGL--VQKL 283
           +   + L +     +  IL  + + +   G+           + + K+ D   +  + ++
Sbjct: 60  NIGTDALLEL-KPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEI 113

Query: 284 CDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMRQNPSSDTNSEKRSTFNAKDILE 343
            +   + F  + +++   + +   K H+T M                +K        + E
Sbjct: 114 AETAKRTFQEKGILAGESRTF---KPHLTFMKLSKAPMLW-------KKGVRKIEPGLYE 163

Query: 344 SLGDFEFGETFVYCVHL-SQRHTHDMDGYFKPSAVISL 380
              D  FGE  +Y + L S       +GY+   + I +
Sbjct: 164 QFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVI 201
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 94 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 104 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Length = 71 Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 97 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 95 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Length = 376 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Length = 102 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
2vfk_A205 AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom 99.97
1vgj_A184 Hypothetical protein PH0099; alpha+beta, LIGT-like 99.97
1iuh_A198 2'-5' RNA ligase; riken structural genomics/proteo 99.93
2d4g_A171 Hypothetical protein BSU11850; beta barrel, alpha 99.87
1jh6_A189 Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli 99.78
2cte_A94 Vigilin; K homology type I domain, RNA-binding, ce 99.58
2dgr_A83 Ring finger and KH domain-containing protein 1; st 99.51
2ctl_A97 Vigilin; K homology type I domain, RNA-binding, ce 99.47
2ctm_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.46
1vig_A71 Vigilin; RNA-binding protein, ribonucleoprotein; N 99.44
2ctj_A95 Vigilin; K homology type I domain, RNA-binding, ce 99.43
2ctf_A102 Vigilin; K homology type I domain, RNA-binding, ce 99.42
2ctk_A104 Vigilin; K homology type I domain, RNA-binding, ce 99.39
3n89_A376 Defective in GERM LINE development protein 3, ISO; 99.34
1zzk_A82 Heterogeneous nuclear ribonucleoprotein K; KH domi 99.3
2opv_A85 KHSRP protein; KH domain, RNA binding protein, KSR 99.3
1dtj_A76 RNA-binding neurooncological ventral antigen 2; KH 99.28
1x4m_A94 FAR upstream element binding protein 1; KH domain, 99.25
1wvn_A82 Poly(RC)-binding protein 1; KH domain, RNA binding 99.23
2axy_A73 Poly(RC)-binding protein 2; protein-DNA complex, D 99.23
1x4n_A92 FAR upstream element binding protein 1; KH domain, 99.22
1we8_A104 Tudor and KH domain containing protein; structural 99.21
2p2r_A76 Poly(RC)-binding protein 2; protein-DNA complex, R 99.2
1j5k_A89 Heterogeneous nuclear ribonucleoprotein K; single- 99.2
2hh3_A106 KH-type splicing regulatory protein; KH-RNA bindin 99.2
1k1g_A131 SF1-BO isoform; splicing, branch point sequence, p 99.19
1ec6_A87 RNA-binding protein NOVA-2; KH domain, alpha-beta 99.17
2cpq_A91 FragIle X mental retardation syndrome related prot 99.17
2hh2_A107 KH-type splicing regulatory protein; KH-RNA bindin 99.16
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 99.12
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.11
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 99.09
1j4w_A174 FUSE binding protein; single-stranded DNA binding 99.09
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 99.07
3krm_A163 Insulin-like growth factor 2 mRNA-binding protein 99.06
2yqr_A119 KIAA0907 protein; structure genomics, KH domain, s 99.06
2jvz_A164 KH type-splicing, FAR upstream element-binding pro 98.91
2jzx_A160 Poly(RC)-binding protein 2; PCBP2, KH domains, RNA 98.85
1j4w_A174 FUSE binding protein; single-stranded DNA binding 98.83
2anr_A178 Neuro-oncological ventral antigen 1; protein-RNA c 98.8
3n89_A376 Defective in GERM LINE development protein 3, ISO; 98.73
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 98.64
2bl5_A140 MGC83862 protein, quaking protein; STAR proteins, 98.58
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.54
3u1k_A630 Polyribonucleotide nucleotidyltransferase 1, MITO; 98.52
4aid_A726 Polyribonucleotide nucleotidyltransferase; transfe 98.16
2e3u_A219 PH-DIM2P, hypothetical protein PH1566; PRE-ribosom 98.11
2qnd_A144 FMR1 protein; KH domain, eukaryotic KH domains, ta 97.94
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.79
1tua_A191 Hypothetical protein APE0754; structural genomics, 97.76
2fsq_A243 ATU0111 protein; alpha-beta barrel, structural gen 97.69
3v69_A140 Protein filia; RNA-binding, embryogenesis, KH doma 97.67
3cdi_A723 Polynucleotide phosphorylase; mRNA turnover, RNAse 97.08
1e3p_A757 Guanosine pentaphosphate synthetase; polyribonucle 96.84
2z0s_A235 Probable exosome complex RNA-binding protein 1; al 86.71
2ja9_A175 Exosome complex exonuclease RRP40; RNA-binding pro 84.92
2ba0_A229 Archeal exosome RNA binding protein RRP4; RNAse PH 84.62
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A Back     alignment and structure
Probab=99.97  E-value=1.4e-30  Score=237.70  Aligned_cols=197  Identities=17%  Similarity=0.316  Sum_probs=158.5

Q ss_pred             CcceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhcccccccc
Q psy2081         164 PYTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPI  243 (380)
Q Consensus       164 ~~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~  243 (380)
                      ++|+||||+++++++++.+.++++.+....+   +. ...|++++++||||.||+++++++++++.++|.++.. .++++
T Consensus         2 ~~r~Fial~~~~~~~~~~l~~~~~~l~~~~~---~~-~~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l~~~~~-~~~~~   76 (205)
T 2vfk_A            2 QPNYFLSIPITNKKITAGIKVLQNSILRQDN---RL-TKAMVGDGSFHITLLVMQLLNEDEVNIGTDALLELKP-FVEEI   76 (205)
T ss_dssp             CCCEEEEEECCCHHHHHHHHHHHHHHHHHCG---GG-GGGBCCTTCCEEEEEEECCCSHHHHHHHHHHHHHHHH-HHHHH
T ss_pred             CCCEEEEEEcCCHHHHHHHHHHHHHHHhcCc---ch-HHHhCCcCccEEEEEEEEcCCHHHHHHHHHHHHHHHH-HHHHH
Confidence            5799999999976899999999999975321   22 2479999999999999999999999999999988742 11223


Q ss_pred             cccCceEEEecceecCCCCCCceeEEEEEecCC--hHHHHHHHHHHHHHHHHCCCccccccCCCceeeEEEeeccccccc
Q psy2081         244 LRSQRIKINLKGLEIMNDDPAEVDILYAKVVDD--SGLVQKLCDDVVQYFISQHLISKAYQKYDTVKMHVTLMNSKYRMR  321 (380)
Q Consensus       244 ~~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~--~~~Lq~L~~~l~~~f~~~Gl~~~~~~e~r~fkpHiTL~nt~~r~~  321 (380)
                      +...||.|+++|+++|++     +|||++|.++  .+.|++|++.|.+.|..+|+..   .+.++|+||+||+|.++...
T Consensus        77 ~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~---~~~~~f~PHiTlar~~~~~~  148 (205)
T 2vfk_A           77 LEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILA---GESRTFKPHLTFMKLSKAPM  148 (205)
T ss_dssp             TTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCB---CCSSCCCCCEEEEEGGGCHH
T ss_pred             hCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCc---CCCCCcceEEEEEecccchh
Confidence            344899999999999993     7999999853  4789999999999999999964   37789999999998754210


Q ss_pred             CCCCCCCCccccCcCCHHHHHHHhCCceeceEEeeEEEEEEee-ecCCCCceeeeEEEeC
Q psy2081         322 QNPSSDTNSEKRSTFNAKDILESLGDFEFGETFVYCVHLSQRH-THDMDGYFKPSAVISL  380 (380)
Q Consensus       322 ~~~~~~~~~~~r~~fda~~il~~~~~~~fG~~~v~~I~L~~s~-~~~~~g~Y~~~~~i~L  380 (380)
                      ..      ...+..++ .++++.+.++.||.+.|++|+||+|. +.+.+|+|+++++++|
T Consensus       149 ~~------~~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L  201 (205)
T 2vfk_A          149 LW------KKGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVI  201 (205)
T ss_dssp             HH------HTTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEEC
T ss_pred             hh------hccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEec
Confidence            00      00012344 46788899999999999999999988 5567899999999987
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A Back     alignment and structure
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2 Back     alignment and structure
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis} Back     alignment and structure
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A* Back     alignment and structure
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A Back     alignment and structure
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A Back     alignment and structure
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens} Back     alignment and structure
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A Back     alignment and structure
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A* Back     alignment and structure
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A Back     alignment and structure
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1 Back     alignment and structure
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens} Back     alignment and structure
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A Back     alignment and structure
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1 Back     alignment and structure
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens} Back     alignment and structure
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens} Back     alignment and structure
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens} Back     alignment and structure
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A* Back     alignment and structure
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans} Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1 Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens} Back     alignment and structure
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A Back     alignment and structure
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B Back     alignment and structure
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1 Back     alignment and structure
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4 Back     alignment and structure
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus} Back     alignment and structure
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A Back     alignment and structure
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A Back     alignment and structure
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1 Back     alignment and structure
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d2ctea181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 2e-10
d1viga_71 d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId 3e-10
d2ctka191 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [T 4e-10
d2ctma181 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [T 6e-09
d2ctla184 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [T 4e-08
d2ctja182 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [T 1e-07
d2je6i369 d.51.1.1 (I:153-221) Exosome complex RNA-binding p 6e-07
d2ctfa190 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [T 3e-06
d1x4na179 d.51.1.1 (A:8-86) Far upstream binding element, FB 8e-06
d2z0sa287 d.51.1.1 (A:148-234) Exosome complex RNA-binding p 1e-05
d1tuaa184 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Ae 2e-05
d1j4wa174 d.51.1.1 (A:1-74) Far upstream binding element, FB 2e-05
d2axya171 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Hum 4e-05
d2ba0a384 d.51.1.1 (A:136-219) Exosome complex RNA-binding p 1e-04
d1x4ma181 d.51.1.1 (A:8-88) Far upstream binding element, FB 2e-04
d1zzka175 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapie 3e-04
d1we8a_104 d.51.1.1 (A:) Tudor and KH domain containing prote 3e-04
d1wvna170 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Huma 4e-04
d1dtja_74 d.51.1.1 (A:) Neuro-oncological ventral antigen 2, 0.001
d2cpqa178 d.51.1.1 (A:212-289) Fragile X mental retardation 0.003
d1tuaa2104 d.51.1.1 (A:85-188) Hypothetical protein APE0754 { 0.004
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 21/75 (28%), Positives = 35/75 (46%)

Query: 82  DIYLGKDGQYKYQCHIPKSFYPFIIGVKGSTKRRIESETNTQLSIPRQGQTGDIIISSYS 141
           DI      Q      IPK  + F+IG  G   + +E +T T++ IPR     + I  + +
Sbjct: 1   DIVARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT 60

Query: 142 ERGIASAKRRLDLLL 156
           + GI  A+  + L+ 
Sbjct: 61  KEGIEKARHEVLLIS 75
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 84 Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Length = 69 Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Length = 87 Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 84 Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71 Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 84 Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Length = 81 Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Length = 74 Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 78 Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Length = 104 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1iuha_183 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId 99.92
d2ctea181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.56
d2ctma181 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.54
d1viga_71 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d2ctfa190 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d2ctla184 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1jh6a_181 tRNA splicing product Appr>p cyclic nucleotide pho 99.45
d2ctja182 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1j4wa174 Far upstream binding element, FBP {Human (Homo sap 99.42
d2ctka191 Vigilin {Human (Homo sapiens) [TaxId: 9606]} 99.42
d1x4na179 Far upstream binding element, FBP {Mouse (Mus musc 99.35
d2cpqa178 Fragile X mental retardation syndrome related prot 99.34
d1zzka175 HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} 99.32
d2ba0a384 Exosome complex RNA-binding protein 1, ECR1 {Archa 99.31
d1wvna170 Poly(RC)-binding protein 1 {Human (Homo sapiens) [ 99.28
d2je6i369 Exosome complex RNA-binding protein 1, ECR1 {Sulfo 99.25
d1x4ma181 Far upstream binding element, FBP {Mouse (Mus musc 99.24
d1dtja_74 Neuro-oncological ventral antigen 2, nova-2, KH3 { 99.24
d1j4wa271 Far upstream binding element, FBP {Human (Homo sap 99.23
d1we8a_104 Tudor and KH domain containing protein, Tdrkh {Mou 99.22
d2z0sa287 Exosome complex RNA-binding protein 1, ECR1 {Aerop 99.22
d2axya171 Poly(RC)-binding protein 2 {Human (Homo sapiens) [ 99.21
d1tuaa184 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 99.02
d1e3ha454 Polynucleotide phosphorylase/guanosine pentaphosph 98.72
d1tuaa2104 Hypothetical protein APE0754 {Aeropyrum pernix [Ta 98.61
d1k1ga_122 RNA splicing factor 1 {Human (Homo sapiens) [TaxId 98.6
d2bl5a1134 Quaking protein A (Xqua) {African clawed frog (Xen 98.38
d2fsqa1232 Putative phosphoesterase Atu0111 {Agrobacterium tu 97.56
d2ja9a285 Ribosomal RNA-processing protein 40, RRP40 {Saccha 96.76
d1hh2p368 Transcription factor NusA, C-terminal domains {The 91.87
d2asba367 Transcription factor NusA, C-terminal domains {Myc 90.78
>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=2.7e-24  Score=190.70  Aligned_cols=172  Identities=14%  Similarity=0.081  Sum_probs=137.5

Q ss_pred             cceeeeccCCChhHHHHHHHHHHHHhcccCcCCCCccccccCCCCceeeEEeeccCCchhHHHHHHHHHhhccccccccc
Q psy2081         165 YTHLLSIPMNVPNIQENFAKFKATVLSDFSRCRGIEESLFQEPGRLHITMGMLMLADSVERDQAVEVLQKCGNNIILPIL  244 (380)
Q Consensus       165 ~thFIaIpl~~~~I~~~~~~fq~~v~~~~~~~~gi~~~~fv~p~~LHLTL~~L~l~~~~ev~~A~~~L~~~~~~~i~~~~  244 (380)
                      +|.||||+++ +++++.+.++++.+....       ...|+++++|||||.|++..++++++.+.++|.++.       .
T Consensus         1 ~RlFial~~p-~~~~~~l~~~~~~l~~~~-------~~r~~~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~-------~   65 (183)
T d1iuha_           1 MRLFYAVFLP-EEVRAALVEAQTKVRPFR-------GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA-------R   65 (183)
T ss_dssp             CEEEEEEECC-HHHHHHHHHHHGGGTTCT-------TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH-------H
T ss_pred             CeEEEEEcCC-HHHHHHHHHHHHHccccc-------ccccCCcccCEEEEEcCCCCCHHHHHHHHHHHHHHH-------h
Confidence            4799999998 589999999999886533       346999999999999999999999999999998873       2


Q ss_pred             ccCceEEEecceecCCCCCCceeEEEEEecCChHHHHHHHHHHHHHHHHC------CCccccccCCCceeeEEEeecccc
Q psy2081         245 RSQRIKINLKGLEIMNDDPAEVDILYAKVVDDSGLVQKLCDDVVQYFISQ------HLISKAYQKYDTVKMHVTLMNSKY  318 (380)
Q Consensus       245 ~~~pf~l~l~Glg~F~ddp~~~rVLya~v~d~~~~Lq~L~~~l~~~f~~~------Gl~~~~~~e~r~fkpHiTL~nt~~  318 (380)
                      ...||.+++.|+++|+ +++.++|+|+.+.  .+.+.+|+..|.+.+..+      |+..    +.++|+|||||++...
T Consensus        66 ~~~pf~l~~~~~~~f~-~~~~~~v~~~~~~--~~~~~~L~~~l~~~l~~~~~~~~~~~~~----~~r~f~PHITlar~~~  138 (183)
T d1iuha_          66 LEAPFRARLRGTGYFP-NEGTPRVWFAKAE--AEGFLRLAEGLRAGVEELLGEEAVRIPG----WDKPFKPHITLARRKA  138 (183)
T ss_dssp             HSCCEEEEEEEEEEES-SSSSCSEEEEEEE--CHHHHHHHHHHHHHHHHHHGGGGGGSTT----TTSCCCCEEEEEEESS
T ss_pred             cCCCeEEEecccccCC-CCCCcEEEEEecC--ChHHHHHHHHHHHHHHHHhhhhccCCCc----cCCCcCCCEEEEeEcC
Confidence            3489999999999999 7899999999997  466776666666666553      4443    7789999999995321


Q ss_pred             cccCCCCCCCCccccCcCCHHHHHHHhCCcee-ceEEeeEEEEEEeeecCCCCceeeeEEEeC
Q psy2081         319 RMRQNPSSDTNSEKRSTFNAKDILESLGDFEF-GETFVYCVHLSQRHTHDMDGYFKPSAVISL  380 (380)
Q Consensus       319 r~~~~~~~~~~~~~r~~fda~~il~~~~~~~f-G~~~v~~I~L~~s~~~~~~g~Y~~~~~i~L  380 (380)
                      ..           ..  +         .+..+ ..+.|++|+|++|.+++.|+.|+++++++|
T Consensus       139 ~~-----------~~--~---------~~~~~~~~~~v~~~~L~~S~~~~~g~~Y~~l~~~~L  179 (183)
T d1iuha_         139 PA-----------PR--V---------PPVLFGLEWPVEGFALVRSELKPKGPVYTVLEKFSL  179 (183)
T ss_dssp             CC-----------CC--C---------CCCCCCEEEEECEEEEEEEEECSSSEEEEEEEEEEC
T ss_pred             Cc-----------hh--h---------hcccCCceEEeeEEEEEEEeccCCCCcceEEEEEeC
Confidence            11           00  0         01112 357999999999999988899999999987
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctma1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1viga_ d.51.1.1 (A:) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctfa1 d.51.1.1 (A:7-96) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctla1 d.51.1.1 (A:8-91) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ctja1 d.51.1.1 (A:8-89) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa1 d.51.1.1 (A:1-74) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4na1 d.51.1.1 (A:8-86) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cpqa1 d.51.1.1 (A:212-289) Fragile X mental retardation syndrome related protein 1, FXR1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zzka1 d.51.1.1 (A:11-85) HnRNP K, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ba0a3 d.51.1.1 (A:136-219) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wvna1 d.51.1.1 (A:5-74) Poly(RC)-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2je6i3 d.51.1.1 (I:153-221) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dtja_ d.51.1.1 (A:) Neuro-oncological ventral antigen 2, nova-2, KH3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j4wa2 d.51.1.1 (A:104-174) Far upstream binding element, FBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein, Tdrkh {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2z0sa2 d.51.1.1 (A:148-234) Exosome complex RNA-binding protein 1, ECR1 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1e3ha4 d.52.3.1 (A:579-632) Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 6 {Streptomyces antibioticus [TaxId: 1890]} Back     information, alignment and structure
>d1tuaa2 d.51.1.1 (A:85-188) Hypothetical protein APE0754 {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1k1ga_ d.51.1.1 (A:) RNA splicing factor 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bl5a1 d.51.1.1 (A:1-134) Quaking protein A (Xqua) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40, RRP40 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1hh2p3 d.52.3.1 (P:277-344) Transcription factor NusA, C-terminal domains {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2asba3 d.52.3.1 (A:263-329) Transcription factor NusA, C-terminal domains {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure