Psyllid ID: psy2089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210------
Protein Sequence
MGLIPAQGRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEIIAAQY
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEccccccccccccccccccccccccccEEEcccccccccEEEEEEccccEEEEHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccEEEEHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHcccccccHHHHEEccccHEccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccccccEEEEEEEccccHccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccEEEEHHHHHccc
Coil and Loop (DISEMBL)
MGLIPAQGRFYAkqmgdklpnveclalstpvthmsvSKDMILKLYKALLResskfpaynyrmYFLRRTRekfqsnknvdnneQISLLYNEGLKELEVLKRQVLISqlfkpdklVIETQMQNSKDTEQTALgcsllgiptksylstmfsprqiSKSFIQHVSDMDCYLFNIGLIKLIFFLTWfrlqfstpssiiiilppesqrgaYVISAEIIAAQY
Flexible Loop (DISEMBL)
MGLIPAQGRFYAKQMGDKLPNVECLALstpvthmsvsKDMILKLYKALlresskfpaynYRMYFLRRTRekfqsnknvdnneqISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIiiilppesqrgAYVISAEIIAAQY
Low Complexity Region (SEG)
MGLIPAQGRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFstpssiiiilppesQRGAYVISAEIIAAQY
Disordered region (IsUnstruct)
*********FYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQ****VDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIET**********TALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEII****
Disordered Region (DISOPRED)
*****************************************LKLYKALLRESSKFPAYNYRMYFLRRTREKFQS******NEQISLLYNEGLKELEVLKRQVLISQLFKPDKL***************************SYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEIIAAQY
Disordered Region (DISEMBL)
MGLIPAQGRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEIIAAQY
Disordered Region (DISPRO)
*GLIPAQGRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQM**************LLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEIIAAQY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIPAQGRFYAKQMGDKLPNVECLALSTPVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPDKLVIETQMQNSKDTEQTALGCSLLGIPTKSYLSTMFSPRQISKSFIQHVSDMDCYLFNIGLIKLIFFLTWFRLQFSTPSSIIIILPPESQRGAYVISAEIIAAQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	216	2.2.26 [Sep-21-2011]
Q8K215	91	LYR motif-containing prot	yes	N/A	0.379	0.901	0.5	6e-18
Q0VCG0	91	LYR motif-containing prot	yes	N/A	0.379	0.901	0.487	6e-17
Q9HD34	91	LYR motif-containing prot	yes	N/A	0.379	0.901	0.487	1e-16
B5FZA8	89	LYR motif-containing prot	yes	N/A	0.370	0.898	0.462	1e-15
B8JLQ0	89	LYR motif-containing prot	yes	N/A	0.388	0.943	0.428	2e-14
Q6DCS1	89	LYR motif-containing prot	N/A	N/A	0.375	0.910	0.456	4e-14
B5X5U9	92	LYR motif-containing prot	N/A	N/A	0.379	0.891	0.390	7e-14
P82116	92	Protein bcn92 OS=Drosophi	N/A	N/A	0.388	0.913	0.447	1e-13
B5XD90	84	LYR motif-containing prot	N/A	N/A	0.384	0.988	0.373	2e-13
O46098	92	Protein bcn92 OS=Drosophi	yes	N/A	0.388	0.913	0.435	4e-13

>sp|Q8K215|LYRM4_MOUSE LYR motif-containing protein 4 OS=Mus musculus GN=Lyrm4 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5   SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKL+IE Q
Sbjct: 65  IIRRQVHIGQLYSTDKLIIENQ 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.
Mus musculus (taxid: 10090)

>sp|Q0VCG0|LYRM4_BOVIN LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1

 Score = 87.4 bits (215), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5   SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I Q++  DKLVIE Q
Sbjct: 65  IIRRQVHIGQMYSTDKLVIENQ 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Bos taurus (taxid: 9913)

>sp|Q9HD34|LYRM4_HUMAN LYR motif-containing protein 4 OS=Homo sapiens GN=LYRM4 PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5   SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           V++RQV I QL+  DKL+IE +
Sbjct: 65  VIRRQVHIGQLYSTDKLIIENR 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Homo sapiens (taxid: 9606)

>sp|B5FZA8|LYRM4_TAEGU LYR motif-containing protein 4 OS=Taeniopygia guttata GN=LYRM4 PE=3 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 57/80 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L+LY+ALLRES +F +YNYR Y +RR R+ F+ NKN+ ++E+I  L N+    LE
Sbjct: 5   SRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAKANLE 64

Query: 97  VLKRQVLISQLFKPDKLVIE 116
           V++RQ  I  ++  +KL+IE
Sbjct: 65  VIQRQGTIDHMYATEKLIIE 84

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Taeniopygia guttata (taxid: 59729)

>sp|B8JLQ0|LYRM4_DANRE LYR motif-containing protein 4 OS=Danio rerio GN=lyrm4 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query: 35  SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 94
           S S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN   + LL N+  + 
Sbjct: 3   SCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAREN 62

Query: 95  LEVLKRQVLISQLFKPDKLVIETQ 118
           L V+KRQV I  L+   + V+E +
Sbjct: 63  LAVIKRQVSIGHLYSAQRTVVEKE 86

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Danio rerio (taxid: 7955)

>sp|Q6DCS1|LYRM4_XENLA LYR motif-containing protein 4 OS=Xenopus laevis GN=lyrm4 PE=3 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 54/81 (66%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LYK +LRES +F +YNYR Y +RR R+ F+  KNVD+  +I  L +   + L 
Sbjct: 5   SRSQVLSLYKIMLRESQRFSSYNYRTYAIRRIRDAFREKKNVDDFLEIETLLHRAKENLN 64

Query: 97  VLKRQVLISQLFKPDKLVIET 117
           V++RQV I Q++   KLVIE+
Sbjct: 65  VIQRQVTIGQMYATHKLVIES 85

Required for nuclear and mitochondrial iron-sulfur protein biosynthesis.

Xenopus laevis (taxid: 8355)

>sp|B5X5U9|LYM4A_SALSA LYR motif-containing protein 4A OS=Salmo salar GN=lyrm4a PE=3 SV=1

 Score = 77.4 bits (189), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 56/82 (68%)

Query: 35  SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 94
           + S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN + + +L N+  + 
Sbjct: 3   ACSRTQVISLYRMLIKESKKFPSYNYRTYALRRVKDSFRENLHVDNPKTLDMLLNQAREN 62

Query: 95  LEVLKRQVLISQLFKPDKLVIE 116
           L V++RQV I Q++   + ++E
Sbjct: 63  LAVIRRQVSIGQMYTAQRTIVE 84

Salmo salar (taxid: 8030)

>sp|P82116|BCN92_DROSU Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1

 Score = 76.3 bits (186), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 34  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 93
           MS  +  I  LY+ LLRES K PAYN+RMY +R+ R+ F++NK + +  +I      G +
Sbjct: 1   MSTRRQAIT-LYRNLLRESEKLPAYNFRMYAVRKIRDAFRANKAIRDFAEIDRQMEAGKQ 59

Query: 94  ELEVLKRQVLISQLFKPDKLVIETQ 118
            LE+++RQV+I  L+  DKLVIE +
Sbjct: 60  NLELIRRQVIIGHLYTADKLVIENK 84

Drosophila subobscura (taxid: 7241)

>sp|B5XD90|LYM4B_SALSA LYR motif-containing protein 4B OS=Salmo salar GN=lyrm4b PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 58/83 (69%)

Query: 34  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 93
           M+     +L LY+ L++ES+KFP+YNYR Y LRR ++ F++N++V++ + +  L N+G  
Sbjct: 1   MAACTAQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRD 60

Query: 94  ELEVLKRQVLISQLFKPDKLVIE 116
            L++++RQV I +++   K ++E
Sbjct: 61  NLDMIRRQVAIGKMYPTQKTIVE 83

Salmo salar (taxid: 8030)

>sp|O46098|BCN92_DROME Protein bcn92 OS=Drosophila melanogaster GN=bcn92 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 56/85 (65%), Gaps = 1/85 (1%)

Query: 34  MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 93
           MS  +  I  LY+ LLRES K P+YN+RMY  R+ R+ F++N++  +  +I     EG +
Sbjct: 1   MSTRRQAIT-LYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQ 59

Query: 94  ELEVLKRQVLISQLFKPDKLVIETQ 118
            LE+++RQV+I  L+  DKLVIE +
Sbjct: 60  NLELIRRQVIIGHLYSADKLVIENK 84

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
149045200	91	rCG44066 [Rattus norvegicus]	0.379	0.901	0.512	6e-17
149731774	91	PREDICTED: LYR motif-containing protein	0.379	0.901	0.512	2e-16
395512045	91	PREDICTED: LYR motif-containing protein	0.379	0.901	0.5	2e-16
148708964	152	cDNA sequence BC034664 [Mus musculus]	0.379	0.539	0.5	3e-16
41235733	91	LYR motif-containing protein 4 [Mus musc	0.379	0.901	0.5	3e-16
354470567	199	PREDICTED: hypothetical protein LOC10076	0.361	0.391	0.512	7e-16
291409405	91	PREDICTED: cDNA sequence BC034664-like [	0.379	0.901	0.512	8e-16
410958561	91	PREDICTED: LYR motif-containing protein	0.379	0.901	0.5	1e-15
355700277	106	LYR motif containing 4 [Mustela putorius	0.412	0.839	0.460	1e-15
426250949	91	PREDICTED: LYR motif-containing protein	0.379	0.901	0.487	1e-15

>gi|149045200|gb|EDL98286.1| rCG44066 [Rattus norvegicus]

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5   SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQVLI QL+  DKL+IE Q
Sbjct: 65  IIRRQVLIGQLYSTDKLIIENQ 86

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149731774|ref|XP_001489677.1| PREDICTED: LYR motif-containing protein 4-like [Equus caballus]

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 59/82 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES  F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5   SRAQVLDLYRAMLRESKHFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKL+IETQ
Sbjct: 65  IIRRQVHIGQLYSTDKLIIETQ 86

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395512045|ref|XP_003760258.1| PREDICTED: LYR motif-containing protein 4-like [Sarcophilus harrisii]

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+ +LRES KF +YNYR Y +RR RE F+ NKNV ++ QI +L N+  + LE
Sbjct: 5   SRAQVLDLYRVMLRESGKFTSYNYRTYAIRRIREAFRENKNVKDSAQIQILVNKAKRNLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQ  IS+L+  DKL+IE Q
Sbjct: 65  IIQRQTHISELYSTDKLIIEKQ 86

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|148708964|gb|EDL40910.1| cDNA sequence BC034664 [Mus musculus]

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 66  SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 125

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKL+IE Q
Sbjct: 126 IIRRQVHIGQLYSTDKLIIENQ 147

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|41235733|ref|NP_958746.1| LYR motif-containing protein 4 [Mus musculus] gi|46576605|sp|Q8K215.1|LYRM4_MOUSE RecName: Full=LYR motif-containing protein 4 gi|21961516|gb|AAH34664.1| LYR motif containing 4 [Mus musculus] gi|26341318|dbj|BAC34321.1| unnamed protein product [Mus musculus] gi|51593329|gb|AAH80772.1| LYR motif containing 4 [Mus musculus]

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5   SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKL+IE Q
Sbjct: 65  IIRRQVHIGQLYSTDKLIIENQ 86

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|354470567|ref|XP_003497535.1| PREDICTED: hypothetical protein LOC100764324 [Cricetulus griseus]

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 41  ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKR 100
           +L LY+A+LRES  F AYNYRMY +RR R+ F+ NK+V +  +I  L N+  ++LE+++R
Sbjct: 117 VLDLYRAMLRESKHFSAYNYRMYAVRRIRDAFRENKSVKDPVEIQALVNKAKRDLEIIRR 176

Query: 101 QVLISQLFKPDKLVIETQ 118
           QV I QL+  DKL+IE Q
Sbjct: 177 QVHIGQLYSTDKLIIENQ 194

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291409405|ref|XP_002721006.1| PREDICTED: cDNA sequence BC034664-like [Oryctolagus cuniculus]

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 58/82 (70%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5   SRAQVLDLYRAMLRESKHFSAYNYRMYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKLVIE Q
Sbjct: 65  IIRRQVHIGQLYSTDKLVIENQ 86

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410958561|ref|XP_003985886.1| PREDICTED: LYR motif-containing protein 4 [Felis catus]

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 58/82 (70%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES  F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct: 5   SRAQVLDLYRAMLRESKHFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLE 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I QL+  DKL+IE Q
Sbjct: 65  IIRRQVHIGQLYSTDKLIIENQ 86

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355700277|gb|AES01400.1| LYR motif containing 4 [Mustela putorius furo]

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 60/89 (67%)

Query: 30  PVTHMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYN 89
           P    + S+  +L LY+A+LRES  F AYNYR Y +RR R+ F+ NKNV +  +I  L N
Sbjct: 13  PSKMAASSRAQVLDLYRAMLRESKHFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQALVN 72

Query: 90  EGLKELEVLKRQVLISQLFKPDKLVIETQ 118
           +  ++L +++RQVLI Q++  DKL+IE Q
Sbjct: 73  KAKRDLGIIRRQVLIGQMYSTDKLIIENQ 101

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426250949|ref|XP_004019195.1| PREDICTED: LYR motif-containing protein 4 [Ovis aries]

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query: 37  SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
           S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct: 5   SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPAEIQALVNKARRDLG 64

Query: 97  VLKRQVLISQLFKPDKLVIETQ 118
           +++RQV I Q++  DKLVIE Q
Sbjct: 65  IIRRQVHIGQMYSTDKLVIENQ 86

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	216
RGD|2324607	91	Lyrm4 "LYR motif containing 4"	0.379	0.901	0.512	8.3e-19
MGI|MGI:2683538	91	Lyrm4 "LYR motif containing 4"	0.379	0.901	0.5	4.6e-18
UNIPROTKB|Q0VCG0	91	LYRM4 "LYR motif-containing pr	0.379	0.901	0.487	4.1e-17
UNIPROTKB|Q9HD34	91	LYRM4 "LYR motif-containing pr	0.379	0.901	0.487	5.3e-17
ZFIN|ZDB-GENE-081104-295	89	lyrm4 "LYR motif containing 4"	0.388	0.943	0.428	1.3e-15
DICTYBASE|DDB_G0290725	81	lyrm4 "LYR motif-containing pr	0.361	0.962	0.468	6.9e-15
ASPGD|ASPL0000074347	113	AN10584 [Emericella nidulans (	0.384	0.734	0.440	1.4e-14
UNIPROTKB|P82116	92	bcn92 "Protein bcn92" [Drosoph	0.388	0.913	0.447	2.3e-14
FB|FBgn0013432	92	bcn92 "bcn92" [Drosophila mela	0.388	0.913	0.435	4.9e-14
UNIPROTKB|F5H189	130	LYRM4 "LYR motif-containing pr	0.305	0.507	0.469	1.9e-12

RGD|2324607 Lyrm4 "LYR motif containing 4" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 42/82 (51%), Positives = 60/82 (73%)

Query:    37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
             S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct:     5 SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query:    97 VLKRQVLISQLFKPDKLVIETQ 118
             +++RQVLI QL+  DKL+IE Q
Sbjct:    65 IIRRQVLIGQLYSTDKLIIENQ 86

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

MGI|MGI:2683538 Lyrm4 "LYR motif containing 4" [Mus musculus (taxid:10090)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 41/82 (50%), Positives = 59/82 (71%)

Query:    37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
             S+  +L LY+A++RES  F AYNYRMY +RR R+ F+ NKNV +  +I  L N+  ++LE
Sbjct:     5 SRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAKRDLE 64

Query:    97 VLKRQVLISQLFKPDKLVIETQ 118
             +++RQV I QL+  DKL+IE Q
Sbjct:    65 IIRRQVHIGQLYSTDKLIIENQ 86

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0VCG0 LYRM4 "LYR motif-containing protein 4" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query:    37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAKRDLG 64

Query:    97 VLKRQVLISQLFKPDKLVIETQ 118
             +++RQV I Q++  DKLVIE Q
Sbjct:    65 IIRRQVHIGQMYSTDKLVIENQ 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9HD34 LYRM4 "LYR motif-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 40/82 (48%), Positives = 58/82 (70%)

Query:    37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query:    97 VLKRQVLISQLFKPDKLVIETQ 118
             V++RQV I QL+  DKL+IE +
Sbjct:    65 VIRRQVHIGQLYSTDKLIIENR 86

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-081104-295 lyrm4 "LYR motif containing 4" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query:    35 SVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKE 94
             S S+  ++ LY+ L++ES KFP+YNYR Y LRR ++ F+ N +VDN   + LL N+  + 
Sbjct:     3 SCSRAQVISLYRMLMKESKKFPSYNYRTYALRRVKDGFRENLHVDNPRTLDLLINQAREN 62

Query:    95 LEVLKRQVLISQLFKPDKLVIETQ 118
             L V+KRQV I  L+   + V+E +
Sbjct:    63 LAVIKRQVSIGHLYSAQRTVVEKE 86

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

DICTYBASE|DDB_G0290725 lyrm4 "LYR motif-containing protein 4" [Dictyostelium discoideum (taxid:44689)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/79 (46%), Positives = 54/79 (68%)

Query:    38 KDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 97
             K ++L LY++L+RES KF +YN+R Y LRR    F+ NKN D NE   L+  + LK LE+
Sbjct:     4 KSVVLHLYRSLVRESKKFSSYNFREYSLRRVSVGFRENKNKDQNETKELI-QDALKNLEM 62

Query:    98 LKRQVLISQLFKPDKLVIE 116
             +KRQ  I+ ++  +KLV+E
Sbjct:    63 VKRQAFINSMYSTNKLVVE 81

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000074347 AN10584 [Emericella nidulans (taxid:162425)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/84 (44%), Positives = 59/84 (70%)

Query:    44 LYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVL 103
             L+++LLR+SS+F  YN+R Y LRRT++ F+ +++     +I  L  EGL+ L ++KRQ +
Sbjct:    18 LFRSLLRQSSQFSNYNFREYALRRTKDAFREHQHESEERKIQELIQEGLQSLRMMKRQTV 77

Query:   104 ISQLFKPDKLVIETQMQNSKDTEQ 127
             ISQ ++ DKLV+E Q +  K+T Q
Sbjct:    78 ISQFYQLDKLVVEGQ-KTGKETGQ 100

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0008047 "enzyme activator activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

UNIPROTKB|P82116 bcn92 "Protein bcn92" [Drosophila subobscura (taxid:7241)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 38/85 (44%), Positives = 56/85 (65%)

Query:    34 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 93
             MS  +  I  LY+ LLRES K PAYN+RMY +R+ R+ F++NK + +  +I      G +
Sbjct:     1 MSTRRQAIT-LYRNLLRESEKLPAYNFRMYAVRKIRDAFRANKAIRDFAEIDRQMEAGKQ 59

Query:    94 ELEVLKRQVLISQLFKPDKLVIETQ 118
              LE+++RQV+I  L+  DKLVIE +
Sbjct:    60 NLELIRRQVIIGHLYTADKLVIENK 84

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

FB|FBgn0013432 bcn92 "bcn92" [Drosophila melanogaster (taxid:7227)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 37/85 (43%), Positives = 56/85 (65%)

Query:    34 MSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLK 93
             MS  +  I  LY+ LLRES K P+YN+RMY  R+ R+ F++N++  +  +I     EG +
Sbjct:     1 MSTRRQAIT-LYRNLLRESEKLPSYNFRMYAARKIRDTFRANRSTRDFAEIDRQMAEGQQ 59

Query:    94 ELEVLKRQVLISQLFKPDKLVIETQ 118
              LE+++RQV+I  L+  DKLVIE +
Sbjct:    60 NLELIRRQVIIGHLYSADKLVIENK 84

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F5H189 LYRM4 "LYR motif-containing protein 4" [Homo sapiens (taxid:9606)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 31/66 (46%), Positives = 47/66 (71%)

Query:    37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELE 96
             S+  +L LY+A+LRES +F AYNYR Y +RR R+ F+ NKNV +  +I  L N+  ++L 
Sbjct:     5 SRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAKRDLG 64

Query:    97 VLKRQV 102
             V++RQ+
Sbjct:    65 VIRRQM 70

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	216
pfam13232	61	pfam13232, Complex1_LYR_1, Complex1_LYR-like	9e-20
pfam05347	59	pfam05347, Complex1_LYR, Complex 1 protein (LYR fa	2e-18

>gnl|CDD|221996 pfam13232, Complex1_LYR_1, Complex1_LYR-like

 Score = 78.8 bits (195), Expect = 9e-20
 Identities = 29/59 (49%), Positives = 42/59 (71%)

Query: 41 ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK 99
          +L LY+ LLR + KFP YN+R Y  RR R++F+ NK++ + E+I  L  EG K+LE+LK
Sbjct: 3  VLSLYRQLLRAARKFPDYNFREYIRRRIRDEFRKNKDLTDPEKIEKLLKEGKKQLELLK 61

This is a family of proteins carrying the LYR motif of family Complex1_LYR, pfam05347, likely to be involved in Fe-S cluster biogenesis in mitochondria. Length = 61

>gnl|CDD|203236 pfam05347, Complex1_LYR, Complex 1 protein (LYR family)

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 41 ILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV 97
          +L LY+ LLRE+ KFP YN R YF RR R++F+ NKN+ + E+I  L  EG K+LEV
Sbjct: 3  VLSLYRQLLREARKFPDYNAREYFRRRIRDEFRKNKNLTDPEKIEALLKEGKKQLEV 59

Proteins in this family have been identified as a component of the higher eukaryotic NADH complex. In Saccharomyces cerevisiae, the Isd11 protein has been shown to play a role in Fe/S cluster biogenesis in mitochondria. We have named this family LYR after a highly conserved tripeptide motif close to the N-terminus of these proteins. Length = 59

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	216
KOG3801|consensus	94		99.96
PF13232	61	Complex1_LYR_1: Complex1_LYR-like	99.71
PF05347	59	Complex1_LYR: Complex 1 protein (LYR family); Inte	99.6
KOG4620|consensus	80		98.54
KOG3426|consensus	124		97.71
PF13233	104	Complex1_LYR_2: Complex1_LYR-like	97.61
KOG3466|consensus	157		97.13
KOG4100|consensus	125		95.96
PF04716	57	ETC_C1_NDUFA5: ETC complex I subunit conserved reg	92.43

>KOG3801|consensus

Probab=99.96  E-value=1.1e-28  Score=190.72  Aligned_cols=87  Identities=52%  Similarity=0.869  Sum_probs=83.3

Q ss_pred             ccCcccHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q psy2089          32 THMSVSKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFKPD  111 (216)
Q Consensus        32 ~~MS~SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~mY~~d  111 (216)
                      ++|+ +|.+|++|||.+||++++||+||||+|+.|+|||.||+|++++||.++++++++|+++|++++||++|++||.++
T Consensus         1 ~~~~-sr~qvlsLyr~~lr~s~qfp~YNyReY~~RrtRD~Fr~Nkn~~Dp~e~~~l~~eakk~LevikRQ~ii~~lY~~~   79 (94)
T KOG3801|consen    1 PQMV-SRRQVLSLYRNLLRESKQFPQYNYREYFQRRTRDTFRANKNVCDPAEIKKLYKEAKKQLEVIKRQSIIGQLYPKD   79 (94)
T ss_pred             CCcc-cHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence            3566 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEeecc
Q psy2089         112 KLVIETQM  119 (216)
Q Consensus       112 kLVVE~~~  119 (216)
                      |+|||..+
T Consensus        80 klIvE~k~   87 (94)
T KOG3801|consen   80 KLIVEVKK   87 (94)
T ss_pred             ceeeeccc
Confidence            99999543

>PF13232 Complex1_LYR_1: Complex1_LYR-like

Probab=99.71  E-value=2e-17  Score=116.03  Aligned_cols=61  Identities=56%  Similarity=0.970  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy2089          39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK   99 (216)
Q Consensus        39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLK   99 (216)
                      ++||+|||++||+++.||++|+|+|++++||++|++|++++||++|+.++++|+++|+.|+
T Consensus         1 ~~vL~LYR~lLR~~~~~~~~~~r~~~~~~ir~~Fr~~~~~td~~~i~~~l~~~~~~L~~l~   61 (61)
T PF13232_consen    1 QQVLSLYRQLLREASKFPDYNFRSYFRRRIRDRFRRNKNVTDPEKIAKLLKEGRKELELLR   61 (61)
T ss_pred             ChHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999999999999999999999999999999999999999874

>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I

Probab=99.60  E-value=2e-15  Score=104.07  Aligned_cols=59  Identities=36%  Similarity=0.615  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Q psy2089          39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEV   97 (216)
Q Consensus        39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLev   97 (216)
                      ++|++|||++||+++.||+++.+++++..+|++|++|++++||++|+.++++|++.|++
T Consensus         1 q~vl~LYR~lLR~~~~~~~~~~r~~~~~~iR~~Fr~n~~~~d~~~I~~~l~~g~~~l~~   59 (59)
T PF05347_consen    1 QRVLSLYRQLLRAARSFPDDSEREYIRAEIRQEFRKNRNETDPEKIEELLKKGEEELEM   59 (59)
T ss_pred             ChHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999999999999999999999999999999999874

The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.

>KOG4620|consensus

Probab=98.54  E-value=3.3e-07  Score=69.49  Aligned_cols=64  Identities=20%  Similarity=0.362  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCC--CCHHHHHHHHHHHHHHHHHHHHH
Q psy2089          37 SKDMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNV--DNNEQISLLYNEGLKELEVLKRQ  101 (216)
Q Consensus        37 SRkqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~--TDPekIe~LLkkGeeeLevLKRQ  101 (216)
                      .+++||+|||.+||+|+-.|..+- .-+...+++||++|+++  .|.-.||.|+.-|+++++.+.+.
T Consensus         7 LQrqVlhlYR~~lraa~~Kp~~~~-~~~m~fvh~EFrk~~~lpr~Df~~IEhLlRvG~rq~~~~s~p   72 (80)
T KOG4620|consen    7 LQRQVLHLYRDLLRAARGKPGAEA-RRWMAFVHAEFRKHAGLPRSDFLRIEHLLRVGRRQLQLLSSP   72 (80)
T ss_pred             HHHHHHHHHHHHHHHhcCCCchHH-HHHHHHHHHHHHHhcCCcHhHHHHHHHHHHHhHHHHHHhcCc
Confidence            578999999999999999997544 44556899999999998  68999999999999999988765

>KOG3426|consensus

Probab=97.71  E-value=9.2e-05  Score=60.39  Aligned_cols=62  Identities=29%  Similarity=0.506  Sum_probs=53.6

Q ss_pred             cHHHHHHHHHHHHHHHcCC-CCcch----HHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHH
Q psy2089          37 SKDMILKLYKALLRESSKF-PAYNY----RMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVL   98 (216)
Q Consensus        37 SRkqVLsLYRqLLRaARkF-pdYNf----ReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevL   98 (216)
                      .|.+|+.|||...|..=.+ -+||-    -+-++..+|+.|++|.++|||.-|.-|+-+|.++|+.+
T Consensus        22 ARrrvl~~yra~~R~iP~~~~dy~L~dm~~~~~R~~ir~qf~kn~hvTD~rViDlLV~kg~~elkei   88 (124)
T KOG3426|consen   22 ARRRVLDLYRAWYRSIPTIVDDYNLQDMTVSQLRDKIREQFRKNAHVTDPRVIDLLVIKGMEELKEI   88 (124)
T ss_pred             HHHHHHHHHHHHHHhcChHHHhcCCcccCHHHHHHHHHHHHHhcCCcCCchhhhHHHHhhHHHHHHH
Confidence            5899999999999987653 44554    45688899999999999999999999999999998876

>PF13233 Complex1_LYR_2: Complex1_LYR-like

Probab=97.61  E-value=0.00028  Score=53.70  Aligned_cols=71  Identities=24%  Similarity=0.308  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHcCCCCcchH-------HHHHHHH----HHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy2089          41 ILKLYKALLRESSKFPAYNYR-------MYFLRRT----REKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQLFK  109 (216)
Q Consensus        41 VLsLYRqLLRaARkFpdYNfR-------eYfrRrI----RdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~mY~  109 (216)
                      |++|||.+||+-+.++.....       ....+++    +++|+.+++.+|+......+.+.+.-+..|+.|.....+..
T Consensus         1 V~~lYR~lLRel~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ef~~~~~~~~~~~~~~~~~~~~~y~~~L~~qr~y~eL~e   80 (104)
T PF13233_consen    1 VLSLYRSLLRELRRYPRRSKIHQLKAPRSPGDQYVLEQARAEFRRHKSANDEEEAQEFLQEWENYATFLKNQREYKELLE   80 (104)
T ss_pred             ChHHHHHHHHHHHhhcchhhhhhhhchhHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999998743221       5677777    99999999999899999999999999999999998776654


Q ss_pred             CC
Q psy2089         110 PD  111 (216)
Q Consensus       110 ~d  111 (216)
                      ..
T Consensus        81 rY   82 (104)
T PF13233_consen   81 RY   82 (104)
T ss_pred             hc
Confidence            43

>KOG3466|consensus

Probab=97.13  E-value=0.0012  Score=55.82  Aligned_cols=62  Identities=26%  Similarity=0.349  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH
Q psy2089          37 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLK   99 (216)
Q Consensus        37 SRkqVLsLYRqLLRaARkFpd-YNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLK   99 (216)
                      ++++|.+|||..||.-..|-. .|.--|+.--+|.-|.+|++ .|-.++..||++|+++|-..+
T Consensus        12 hkqkV~rLYKRaLR~lenWy~~rn~yRy~ac~~RARFden~~-kD~~k~~~LLa~ge~E~w~~r   74 (157)
T KOG3466|consen   12 HKQKVRRLYKRALRDLENWYVHRNIYRYQACIIRARFDENDE-KDVDKAIRLLAEGERELWEWR   74 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHHHHhhc
Confidence            789999999999999988753 45556788899999999998 999999999999999886655

>KOG4100|consensus

Probab=95.96  E-value=0.046  Score=44.95  Aligned_cols=66  Identities=23%  Similarity=0.244  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2089          39 DMILKLYKALLRESSKFPAYNYRMYFLRRTREKFQSNKNVDNNEQISLLYNEGLKELEVLKRQVLISQ  106 (216)
Q Consensus        39 kqVLsLYRqLLRaARkFpdYNfReYfrRrIRdeFReNK~~TDPekIe~LLkkGeeeLevLKRQsvI~~  106 (216)
                      ..|--|||.+||.-+-.|. .-|.-=-..+|+|||.|+++ +|.+++-++.+=+.-..+|..|.-++.
T Consensus        10 ~rvrlLYkriLrlHr~lp~-~~R~lGD~YVkdEFrrHk~v-np~~~~~FlteW~~Ya~~l~qql~~~g   75 (125)
T KOG4100|consen   10 PRVRLLYKRILRLHRGLPA-ELRALGDQYVKDEFRRHKTV-NPLEAQGFLTEWERYAVALSQQLSSAG   75 (125)
T ss_pred             chHHHHHHHHHHHHccCCh-HHHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            4566699999999999996 66777777899999999999 899999998888877777776655433

>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=92.43  E-value=0.57  Score=33.59  Aligned_cols=52  Identities=21%  Similarity=0.395  Sum_probs=46.3

Q ss_pred             cHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q psy2089          37 SKDMILKLYKALLRESSKFPA-YNYRMYFLRRTREKFQSNKNVDNNEQISLLY   88 (216)
Q Consensus        37 SRkqVLsLYRqLLRaARkFpd-YNfReYfrRrIRdeFReNK~~TDPekIe~LL   88 (216)
                      .|.....||.++|+.-.++|. ..||+|...-+++-+.-.+.+.|.++|++.+
T Consensus         3 pr~~L~~lY~~~L~~L~~~P~~a~YR~~tE~it~~Rl~iv~~~~d~~~iE~~i   55 (57)
T PF04716_consen    3 PREALISLYNKTLKALKKIPEDAAYRQYTEAITKHRLKIVEEEEDIEKIEKKI   55 (57)
T ss_pred             hHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHccccHHHHHHHh
Confidence            367889999999999999984 6699999999999999998899999998765

6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	216
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 8e-04
 Identities = 35/258 (13%), Positives = 64/258 (24%), Gaps = 101/258 (39%)

Query: 45  YKAL---LRESSKFPAYNYRMYFLRRTR-----EKFQSNKNVDNNEQISLLYNEGLKELE 96
           YK L   ++   + P+   RMY  +R R     + F +  NV   +    L  + L EL 
Sbjct: 91  YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF-AKYNVSRLQPYLKL-RQALLELR 148

Query: 97  ----------------VLKRQVL-----------------ISQLFKPDKLVIETQMQN-- 121
                            +   V                  +     P+ ++    +Q   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE--MLQKLL 206

Query: 122 -SKDTEQTALGCSLLGIP-----TKSYLSTMFSPRQISKSFI--QHVSDMDCY-LFNIG- 171
              D   T+       I       ++ L  +   +      +   +V +   +  FN+  
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 172 --LI--------------------------------KLIFFLTWFRLQFSTPSSIIIILP 197
             L+                                     L +   +          LP
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD-------LP 319

Query: 198 PESQRGA-YVISAEIIAA 214
            E        +S  IIA 
Sbjct: 320 REVLTTNPRRLS--IIAE 335

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00