Psyllid ID: psy2134

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccEEEEEEccccccccccccccEEEEEEEEcHHHHHHHHHHHcccHHHHHHHHHHHHcccEEcccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHcHHHHHHHHHccccEEEEEEEEEcccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcHHHHccccccc
Coil and Loop (DISEMBL)
YGQVEKVVIYNekqsddeaygQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAelydqslfdhndfsg
Flexible Loop (DISEMBL)
ygqvekvviynekqsddeaygqVEKVVIYnekqsddeasEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELydqslfdhndfsg
Low Complexity Region (SEG)
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG
Disordered region (IsUnstruct)
*******VIY*********YGQVEKVVIYNE******ASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLF*******
Disordered Region (DISOPRED)
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQ******EVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDF**
Disordered Region (DISEMBL)
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG
Disordered Region (DISPRO)
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDH*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q8T6B9	637	Poly(U)-binding-splicing	no	N/A	0.75	0.122	0.458	7e-15
Q5R469	558	Poly(U)-binding-splicing	yes	N/A	0.673	0.125	0.458	2e-13
Q9UHX1	559	Poly(U)-binding-splicing	yes	N/A	0.673	0.125	0.458	2e-13
Q9WV25	564	Poly(U)-binding-splicing	yes	N/A	0.673	0.124	0.447	6e-13
Q3UEB3	564	Poly(U)-binding-splicing	yes	N/A	0.673	0.124	0.447	6e-13
Q2HJG2	530	Poly(U)-binding-splicing	yes	N/A	0.673	0.132	0.447	2e-12
Q6IQE0	516	Poly(U)-binding-splicing	no	N/A	0.673	0.135	0.447	4e-11
P42698	387	DNA-damage-repair/tolerat	yes	N/A	0.653	0.175	0.321	0.0004

>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila melanogaster GN=pUf68 PE=1 SV=2

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 57/96 (59%), Gaps = 18/96 (18%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS---DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
           E Q +   +G V +V+I+NEKQ+   DD+ +E+IVKIFV FS                 A
Sbjct: 557 EIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSAG---------------A 601

Query: 69  EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           EA   ++AL+GRFF GR V AELYDQ +FD  D SG
Sbjct: 602 EAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG 637

Splicing factor that regulates oogenesis and controls both mitosis and mRNA localization in the germline by regulating mRNA splicing of a subset of genes within the ovary. Probably acts by regulating the alternative splice site selection of the otu transcript. Also regulates the alternative splicing of eIF-4E and grk, while it is not involved in the splicing of par-1, sqd and psq.
Drosophila melanogaster (taxid: 7227)

>sp|Q5R469|PUF60_PONAB Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 489 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 533

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AE+YDQ  FD++D S 
Sbjct: 534 RWFAGRKVVAEVYDQERFDNSDLSA 558

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Pongo abelii (taxid: 9601)

>sp|Q9UHX1|PUF60_HUMAN Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 490 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 534

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AE+YDQ  FD++D S 
Sbjct: 535 RWFAGRKVVAEVYDQERFDNSDLSA 559

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Does not repress TFIIH-mediated transcription in xeroderma pigmentosum complementation group B (XPB) cells. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Isoform 6 failed to repress MYC transcription and inhibited FIR-induced apoptosis in colorectal cancer. Isoform 6 may contribute to tumor progression by enabling increased MYC expression and greater resistance to apoptosis in tumors than in normal cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Homo sapiens (taxid: 9606)

>sp|Q9WV25|PUF60_RAT Poly(U)-binding-splicing factor PUF60 OS=Rattus norvegicus GN=Puf60 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------MASETHKAIQALNG 539

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+F GR V AE+YDQ  FD++D S 
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLSA 564

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Rattus norvegicus (taxid: 10116)

>sp|Q3UEB3|PUF60_MOUSE Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------MASETHKAIQALNG 539

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+F GR V AE+YDQ  FD++D S 
Sbjct: 540 RWFGGRKVVAEVYDQERFDNSDLSA 564

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Mus musculus (taxid: 10090)

>sp|Q2HJG2|PUF60_BOVIN Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A   LNG
Sbjct: 461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------VASETHKAIQDLNG 505

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AE+YDQ  FD++D S 
Sbjct: 506 RWFAGRKVVAEVYDQERFDNSDLSA 530

DNA- and RNA-binding protein, involved in several nuclear processes such as pre-mRNA splicing, apoptosis and transcription regulation. In association with FUBP1 regulates MYC transcription at the P2 promoter through the core-TFIIH basal transcription factor. Acts as a transcriptional repressor through the core-TFIIH basal transcription factor. Represses FUBP1-induced transcriptional activation but not basal transcription. Decreases ERCC3 helicase activity. Is also involved in pre-mRNA splicing. Promotes splicing of an intron with weak 3'-splice site and pyrimidine tract in a cooperative manner with U2AF2. Involved in apoptosis induction when overexpressed in HeLa cells. Modulates alternative splicing of several mRNAs. Binds to relaxed DNA of active promoter regions. Binds to the pyrimidine tract and 3'-splice site regions of pre-mRNA; binding is enhanced in presence of U2AF2. Binds to Y5 RNA in association with TROVE2. Binds to poly(U) RNA.

Bos taurus (taxid: 9913)

>sp|Q6IQE0|PU60B_DANRE Poly(U)-binding-splicing factor PUF60-B OS=Danio rerio GN=puf60b PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/85 (44%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           YG V +V+IY E+Q +++ +E+IVKIFV FS         DA       E   A  ALN 
Sbjct: 447 YGAVNRVIIYQERQGEEDDAEIIVKIFVEFS---------DA------GEMNKAIQALNN 491

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AELYDQ  F+ +D + 
Sbjct: 492 RWFAGRKVVAELYDQDRFNSSDLTA 516

DNA- and RNA-binding protein, involved in transcription repression and pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana GN=DRT111 PE=2 SV=2

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 16/84 (19%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           YG V +V+I+   + +    E  V+IFV FS+ +E   A   L+GR+F            
Sbjct: 311 YGTVTRVLIFEITEPNFPVHEA-VRIFVQFSRPEETTKALVDLDGRYFG----------- 358

Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
               GR VRA  YD+  F  N+ +
Sbjct: 359 ----GRTVRATFYDEEKFSKNELA 378

Seems to be involved in the resistance to UV light and chemical DNA-damaging agents.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
242021379	571	Poly U-binding-splicing factor half pint	0.75	0.136	0.548	3e-20
270001539	591	hypothetical protein TcasGA2_TC000381 [T	0.788	0.138	0.530	5e-20
307195017	561	Poly(U)-binding-splicing factor half pin	0.75	0.139	0.553	9e-20
307177474	510	Poly(U)-binding-splicing factor half pin	0.75	0.152	0.553	9e-20
383861059	592	PREDICTED: poly(U)-binding-splicing fact	0.75	0.131	0.553	1e-19
380016392	592	PREDICTED: poly(U)-binding-splicing fact	0.75	0.131	0.553	1e-19
340725363	592	PREDICTED: poly(U)-binding-splicing fact	0.75	0.131	0.553	1e-19
328783360	592	PREDICTED: poly(U)-binding-splicing fact	0.75	0.131	0.553	1e-19
345484300	605	PREDICTED: LOW QUALITY PROTEIN: poly(U)-	0.75	0.128	0.531	6e-19
328704296	572	PREDICTED: poly(U)-binding-splicing fact	0.75	0.136	0.526	8e-19

>gi|242021379|ref|XP_002431122.1| Poly U-binding-splicing factor half pint, putative [Pediculus humanus corporis] gi|212516371|gb|EEB18384.1| Poly U-binding-splicing factor half pint, putative [Pediculus humanus corporis]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/93 (54%), Positives = 63/93 (67%), Gaps = 15/93 (16%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAE 71
           E Q +   YG VE+V+IYNEKQSD++ S++IVKIFV FS+  EAE ARD           
Sbjct: 494 EIQDECSKYGVVERVIIYNEKQSDNDDSDIIVKIFVEFSRTSEAESARD----------- 542

Query: 72  YARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
               ALNGR+F GR+V+  LYDQ LFDH+DFSG
Sbjct: 543 ----ALNGRYFGGRLVKCSLYDQVLFDHSDFSG 571

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001539|gb|EEZ97986.1| hypothetical protein TcasGA2_TC000381 [Tribolium castaneum]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 52/98 (53%), Positives = 67/98 (68%), Gaps = 16/98 (16%)

Query: 8   VIYNEKQSDDEAYGQVEKVVIYNEKQSD-DEASEVIVKIFVSFSKMQEAEYARDALNGRF 66
            +  E Q +   +G VE+V+IYNEKQS+ D+AS+V+VKIFV F++               
Sbjct: 509 TLQEEIQEECSKFGTVERVIIYNEKQSEEDDASDVVVKIFVEFTET-------------- 554

Query: 67  FAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
             EAE ARDALNGR+F GRMV+A LYDQ+LFDH+DFSG
Sbjct: 555 -PEAEKARDALNGRYFGGRMVQASLYDQTLFDHSDFSG 591

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195017|gb|EFN77085.1| Poly(U)-binding-splicing factor half pint [Harpegnathos saltator]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 483 EIQDECSKFGVVERVIIYNERQSEDDENAEVIVKIFVEFSQM---------------SEA 527

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD++DFSG
Sbjct: 528 ERARDSLNGRYFGGRLVKGELYDQALFDNSDFSG 561

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177474|gb|EFN66601.1| Poly(U)-binding-splicing factor half pint [Camponotus floridanus]

 Score =  100 bits (250), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 66/94 (70%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IY E+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 432 EIQDECSKFGVVERVIIYKERQSEDDENAEVIVKIFVEFSQM---------------SEA 476

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD+NDFSG
Sbjct: 477 ERARDSLNGRYFGGRLVKGELYDQALFDNNDFSG 510

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861059|ref|XP_003706004.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Megachile rotundata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 514 EIQDECSKFGVVERVIIYNERQSEDDEDAEVIVKIFVEFSQM---------------SEA 558

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD++DFSG
Sbjct: 559 ERARDSLNGRYFGGRLVKGELYDQALFDNSDFSG 592

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016392|ref|XP_003692169.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis florea]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 514 EIQDECSKFGVVERVIIYNERQSEDDEDAEVIVKIFVEFSQM---------------SEA 558

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD++DFSG
Sbjct: 559 ERARDSLNGRYFGGRLVKGELYDQALFDNSDFSG 592

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725363|ref|XP_003401040.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus terrestris] gi|350403872|ref|XP_003486932.1| PREDICTED: poly(U)-binding-splicing factor half pint-like [Bombus impatiens]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 514 EIQDECSKFGVVERVIIYNERQSEDDEDAEVIVKIFVEFSQM---------------SEA 558

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD++DFSG
Sbjct: 559 ERARDSLNGRYFGGRLVKGELYDQALFDNSDFSG 592

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783360|ref|XP_001121000.2| PREDICTED: poly(U)-binding-splicing factor half pint-like [Apis mellifera]

 Score =  100 bits (248), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 52/94 (55%), Positives = 67/94 (71%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE +EVIVKIFV FS+M               +EA
Sbjct: 514 EIQDECSKFGVVERVIIYNERQSEDDEDAEVIVKIFVEFSQM---------------SEA 558

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+LFD++DFSG
Sbjct: 559 ERARDSLNGRYFGGRLVKGELYDQALFDNSDFSG 592

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345484300|ref|XP_003424998.1| PREDICTED: LOW QUALITY PROTEIN: poly(U)-binding-splicing factor half pint-like [Nasonia vitripennis]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 50/94 (53%), Positives = 65/94 (69%), Gaps = 16/94 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQS-DDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E Q +   +G VE+V+IYNE+QS DDE  E+IVKIFV FS+M                EA
Sbjct: 527 EIQDECSKFGVVERVIIYNERQSEDDEDPEIIVKIFVEFSQM---------------TEA 571

Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           E ARD+LNGR+F GR+V+ ELYDQ+L+D+ND+SG
Sbjct: 572 ERARDSLNGRYFGGRLVKGELYDQALYDNNDYSG 605

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328704296|ref|XP_001948399.2| PREDICTED: poly(U)-binding-splicing factor half pint-like [Acyrthosiphon pisum]

 Score = 97.4 bits (241), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/95 (52%), Positives = 66/95 (69%), Gaps = 17/95 (17%)

Query: 12  EKQSDDEAYGQVEKVVIYNEKQSD--DEASEVIVKIFVSFSKMQEAEYARDALNGRFFAE 69
           E Q +   +G V++++IY EKQSD  DE S+ IVKIFV F++M               +E
Sbjct: 493 EIQDECCKFGVVKRIIIYKEKQSDCVDEDSDTIVKIFVEFTQM---------------SE 537

Query: 70  AEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
           AE ARD++NGRFF GR+V+AELYDQ+LFDH+DFSG
Sbjct: 538 AEQARDSINGRFFGGRLVKAELYDQALFDHSDFSG 572

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
FB|FBgn0028577	637	pUf68 "poly U binding factor 6	0.778	0.127	0.454	7.3e-13
UNIPROTKB|F1P1V2	522	LOC426301 "Uncharacterized pro	0.663	0.132	0.464	3.6e-11
UNIPROTKB|E2RA48	543	PUF60 "Uncharacterized protein	0.663	0.127	0.464	3.8e-11
UNIPROTKB|Q9UHX1	559	PUF60 "Poly(U)-binding-splicin	0.663	0.123	0.464	4e-11
UNIPROTKB|J9P4I7	560	PUF60 "Uncharacterized protein	0.663	0.123	0.464	4e-11
UNIPROTKB|F1N238	530	PUF60 "Poly(U)-binding-splicin	0.663	0.130	0.464	4.7e-11
UNIPROTKB|Q2HJG2	530	PUF60 "Poly(U)-binding-splicin	0.663	0.130	0.464	9.8e-11
MGI|MGI:1915209	564	Puf60 "poly-U binding splicing	0.663	0.122	0.452	1.1e-10
RGD|621674	564	Puf60 "poly-U binding splicing	0.663	0.122	0.452	1.1e-10
UNIPROTKB|I3LVL9	406	PUF60 "Uncharacterized protein	0.634	0.162	0.469	2.1e-10

FB|FBgn0028577 pUf68 "poly U binding factor 68kD" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 45/99 (45%), Positives = 59/99 (59%)

Query:     9 IYNEKQSDDEAYGQVEKVVIYNEKQS---DDEASEVIVKIFVSFSKMQEAEYARDALNGR 65
             +  E Q +   +G V +V+I+NEKQ+   DD+ +E+IVKIFV FS             G 
Sbjct:   554 LQEEIQEECSKFGTVSRVIIFNEKQTENEDDDEAEIIVKIFVEFSA------------G- 600

Query:    66 FFAEAEYARDALNGRFFAGRMVRAELYDQSLFDHNDFSG 104
               AEA   ++AL+GRFF GR V AELYDQ +FD  D SG
Sbjct:   601 --AEAMRGKEALDGRFFGGRRVVAELYDQGIFDQGDLSG 637

GO:0008266 "poly(U) RNA binding" evidence=ISS;NAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS;IMP;NAS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006376 "mRNA splice site selection" evidence=NAS;IMP

GO:0007282 "cystoblast division" evidence=IMP

GO:0000380 "alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005634 "nucleus" evidence=IC;IDA

GO:0051726 "regulation of cell cycle" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IPI

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0001558 "regulation of cell growth" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1P1V2 LOC426301 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   453 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 497

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   498 RWFAGRKVVAEVYDQERFDNSDLS 521

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

UNIPROTKB|E2RA48 PUF60 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   474 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 518

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   519 RWFAGRKVVAEVYDQERFDNSDLS 542

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q9UHX1 PUF60 "Poly(U)-binding-splicing factor PUF60" [Homo sapiens (taxid:9606)]

 Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   490 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 534

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   535 RWFAGRKVVAEVYDQERFDNSDLS 558

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|J9P4I7 PUF60 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 163 (62.4 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   491 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 535

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   536 RWFAGRKVVAEVYDQERFDNSDLS 559

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N238 PUF60 "Poly(U)-binding-splicing factor PUF60" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 4.7e-11, P = 4.7e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVA---------------SETHKAIQALNG 505

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   506 RWFAGRKVVAEVYDQERFDNSDLS 529

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q2HJG2 PUF60 "Poly(U)-binding-splicing factor PUF60" [Bos taurus (taxid:9913)]

 Score = 159 (61.0 bits), Expect = 9.8e-11, P = 9.8e-11
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS   E   A               +D LNG
Sbjct:   461 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSVASETHKA--------------IQD-LNG 505

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+FAGR V AE+YDQ  FD++D S
Sbjct:   506 RWFAGRKVVAEVYDQERFDNSDLS 529

GO:0005634 "nucleus" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1915209 Puf60 "poly-U binding splicing factor 60" [Mus musculus (taxid:10090)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 38/84 (45%), Positives = 50/84 (59%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 539

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+F GR V AE+YDQ  FD++D S
Sbjct:   540 RWFGGRKVVAEVYDQERFDNSDLS 563

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621674 Puf60 "poly-U binding splicing factor 60" [Rattus norvegicus (taxid:10116)]

 Score = 159 (61.0 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 38/84 (45%), Positives = 50/84 (59%)

Query:    20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
             +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct:   495 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSMA---------------SETHKAIQALNG 539

Query:    80 RFFAGRMVRAELYDQSLFDHNDFS 103
             R+F GR V AE+YDQ  FD++D S
Sbjct:   540 RWFGGRKVVAEVYDQERFDNSDLS 563

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA;ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|I3LVL9 PUF60 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 154 (59.3 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 38/81 (46%), Positives = 49/81 (60%)

Query:    23 VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF 82
             V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNGR+F
Sbjct:   340 VNRVIIYQEKQGEEEDAEIIVKIFVEFSVA---------------SETHKAIQALNGRWF 384

Query:    83 AGRMVRAELYDQSLFDHNDFS 103
             AGR V AE+YDQ  FD++D S
Sbjct:   385 AGRKVVAEVYDQERFDNSDLS 405

GO:0019907 "cyclin-dependent protein kinase activating kinase holoenzyme complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	104
cd12648	98	cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 i	4e-26
TIGR01645	612	TIGR01645, half-pint, poly-U binding splicing fact	5e-21
cd12647	96	cd12647, RRM_UHM_SPF45, RNA recognition motif in U	6e-11
cd12374	85	cd12374, RRM_UHM_SPF45_PUF60, RNA recognition moti	1e-10
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	3e-05
cd12282	91	cd12282, RRM2_TatSF1_like, RNA recognition motif 2	7e-05
cd12285	85	cd12285, RRM3_RBM39_like, RNA recognition motif 3	8e-05
cd12232	89	cd12232, RRM3_U2AF65, RNA recognition motif 3 foun	0.001

>gnl|CDD|241092 cd12648, RRM3_UHM_PUF60, RNA recognition motif 3 in UHM domain of poly(U)-binding-splicing factor PUF60 and similar proteins

 Score = 92.5 bits (230), Expect = 4e-26
 Identities = 41/84 (48%), Positives = 52/84 (61%), Gaps = 15/84 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                  EAE A  ALNG
Sbjct: 30  FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSLPS---------------EAEKAIQALNG 74

Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
           R+F GR V+AELYDQ+ FD +D S
Sbjct: 75  RWFGGRKVKAELYDQTKFDASDLS 98

This subgroup corresponds to the RRM3 of PUF60, also termed FUSE-binding protein-interacting repressor (FBP-interacting repressor or FIR), or Ro-binding protein 1 (RoBP1), or Siah-binding protein 1 (Siah-BP1), an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors another RRM and binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) in several nuclear proteins. The research indicates that PUF60 binds FUSE as a dimer, and only the first two RRM domains participate in the single-stranded DNA recognition. . Length = 98

>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint family

 Score = 85.9 bits (212), Expect = 5e-21
 Identities = 40/85 (47%), Positives = 51/85 (60%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V++V+I  EKQ ++E +E+IVKIFV FS                  E + A+ AL+G
Sbjct: 543 FGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDS---------------MEVDRAKAALDG 587

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           RFF GR V AE YDQ LFDH D SG
Sbjct: 588 RFFGGRTVVAEAYDQILFDHADLSG 612

The proteins represented by this model contain three RNA recognition motifs (rrm: pfam00076) and have been characterized as poly-pyrimidine tract binding proteins associated with RNA splicing factors. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA. Length = 612

>gnl|CDD|241091 cd12647, RRM_UHM_SPF45, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 53.8 bits (130), Expect = 6e-11
 Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 21/85 (24%)

Query: 20  YGQVEKVVIYN--EKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL 77
           YG+V KV+I+       DDEA    V+IFV F +++ A  A   LNGRFF          
Sbjct: 31  YGKVTKVLIFEIPGASPDDEA----VRIFVEFERVESAIKAVVDLNGRFF---------- 76

Query: 78  NGRFFAGRMVRAELYDQSLFDHNDF 102
                 GR V+A  YD+  F  ND 
Sbjct: 77  -----GGRTVKASFYDEERFRRNDL 96

This subgroup corresponds to the RRM of SPF45, also termed RNA-binding motif protein 17 (RBM17), an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. . Length = 96

>gnl|CDD|240820 cd12374, RRM_UHM_SPF45_PUF60, RNA recognition motif in UHM domain of 45 kDa-splicing factor (SPF45) and similar proteins

 Score = 52.6 bits (127), Expect = 1e-10
 Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 18/74 (24%)

Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
          YG+V  V+++    S+ + +   V+IFV FS                  EA  A  ALNG
Sbjct: 30 YGKVLNVIVHEVASSEADDA---VRIFVEFSDA---------------DEAIKAVRALNG 71

Query: 80 RFFAGRMVRAELYD 93
          RFF GR V A  YD
Sbjct: 72 RFFGGRKVTARFYD 85

This subfamily corresponds to the RRM found in UHM domain of 45 kDa-splicing factor (SPF45 or RBM17), poly(U)-binding-splicing factor PUF60 (FIR or Hfp or RoBP1 or Siah-BP1), and similar proteins. SPF45 is an RNA-binding protein consisting of an unstructured N-terminal region, followed by a G-patch motif and a C-terminal U2AF (U2 auxiliary factor) homology motifs (UHM) that harbors a RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and an Arg-Xaa-Phe sequence motif. SPF45 regulates alternative splicing of the apoptosis regulatory gene FAS (also known as CD95). It induces exon 6 skipping in FAS pre-mRNA through the UHM domain that binds to tryptophan-containing linear peptide motifs (UHM ligand motifs, ULMs) present in the 3' splice site-recognizing factors U2AF65, SF1 and SF3b155. PUF60 is an essential splicing factor that functions as a poly-U RNA-binding protein required to reconstitute splicing in depleted nuclear extracts. Its function is enhanced through interaction with U2 auxiliary factor U2AF65. PUF60 also controls human c-myc gene expression by binding and inhibiting the transcription factor far upstream sequence element (FUSE)-binding-protein (FBP), an activator of c-myc promoters. PUF60 contains two central RRMs and a C-terminal UHM domain. . Length = 85

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 38.7 bits (91), Expect = 3e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 8/48 (16%)

Query: 19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF 66
           YG VEK++I+ +           V+  V F  ++ AE A+ ALNGR 
Sbjct: 24 PYGAVEKILIFEKNT--------GVQALVQFDSVESAENAKKALNGRN 63

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

>gnl|CDD|240728 cd12282, RRM2_TatSF1_like, RNA recognition motif 2 in HIV Tat-specific factor 1 (Tat-SF1) and similar proteins

 Score = 38.0 bits (89), Expect = 7e-05
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 23/85 (27%)

Query: 9  IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
          + ++ + + E +GQV+KVV++      D   + +  +     K +E E            
Sbjct: 25 LRDDLREECEKFGQVKKVVVF------DRHPDGVASV-----KFKEPE------------ 61

Query: 69 EAEYARDALNGRFFAGRMVRAELYD 93
          EA+   +ALNGR+FAGR + AE +D
Sbjct: 62 EADRCIEALNGRWFAGRQLEAERWD 86

This subfamily corresponds to the RRM2 of Tat-SF1 and CUS2. Tat-SF1 is the cofactor for stimulation of transcriptional elongation by human immunodeficiency virus-type 1 (HIV-1) Tat. It is a substrate of an associated cellular kinase. Tat-SF1 contains two RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains), and a highly acidic carboxyl-terminal half. The family also includes CUS2, a yeast homolog of human Tat-SF1. CUS2 interacts with U2 RNA in splicing extracts and functions as a splicing factor that aids assembly of the splicing-competent U2 snRNP in vivo. CUS2 also associates with PRP11 that is a subunit of the conserved splicing factor SF3a. Like Tat-SF1, CUS2 contains two RRMs as well. . Length = 91

>gnl|CDD|240731 cd12285, RRM3_RBM39_like, RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins

 Score = 37.9 bits (89), Expect = 8e-05
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 23/76 (30%)

Query: 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL 77
            +G VE + +            V VK    F  ++ A+    ALNGR+           
Sbjct: 33 SKFGPVEHIKVDKNS----PEGVVYVK----FKTVEAAQKCIQALNGRW----------- 73

Query: 78 NGRFFAGRMVRAELYD 93
              F GR + AE  D
Sbjct: 74 ----FDGRQITAEYVD 85

This subfamily corresponds to the RRM3 of RBM39, also termed hepatocellular carcinoma protein 1, or RNA-binding region-containing protein 2, or splicing factor HCC1, ia nuclear autoantigen that contains an N-terminal arginine/serine rich (RS) motif and three RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). An octapeptide sequence called the RS-ERK motif is repeated six times in the RS region of RBM39. Based on the specific domain composition, RBM39 has been classified into a family of non-snRNP (small nuclear ribonucleoprotein) splicing factors that are usually not complexed to snRNAs. . Length = 85

>gnl|CDD|240678 cd12232, RRM3_U2AF65, RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
            YG+V  VVI    +++      + K+FV F+ +++A+ A+ AL GR F 
Sbjct: 33 GKYGKVLSVVI-PRPEAEGVDVPGVGKVFVEFADVEDAQKAQLALAGRKFD 82

This subfamily corresponds to the RRM3 of U2AF65 and dU2AF50. U2AF65, also termed U2AF2, is the large subunit of U2 small nuclear ribonucleoprotein (snRNP) auxiliary factor (U2AF), which has been implicated in the recruitment of U2 snRNP to pre-mRNAs and is a highly conserved heterodimer composed of large and small subunits. U2AF65 specifically recognizes the intron polypyrimidine tract upstream of the 3' splice site and promotes binding of U2 snRNP to the pre-mRNA branchpoint. U2AF65 also plays an important role in the nuclear export of mRNA. It facilitates the formation of a messenger ribonucleoprotein export complex, containing both the NXF1 receptor and the RNA substrate. Moreover, U2AF65 interacts directly and specifically with expanded CAG RNA, and serves as an adaptor to link expanded CAG RNA to NXF1 for RNA export. U2AF65 contains an N-terminal RS domain rich in arginine and serine, followed by a proline-rich segment and three C-terminal RNA recognition motifs (RRMs), also termed RBDs (RNA binding domains) or RNPs (ribonucleoprotein domains). The N-terminal RS domain stabilizes the interaction of U2 snRNP with the branch point (BP) by contacting the branch region, and further promotes base pair interactions between U2 snRNA and the BP. The proline-rich segment mediates protein-protein interactions with the RRM domain of the small U2AF subunit (U2AF35 or U2AF1). The RRM1 and RRM2 are sufficient for specific RNA binding, while RRM3 is responsible for protein-protein interactions. The family also includes Splicing factor U2AF 50 kDa subunit (dU2AF50), the Drosophila ortholog of U2AF65. dU2AF50 functions as an essential pre-mRNA splicing factor in flies. It associates with intronless mRNAs and plays a significant and unexpected role in the nuclear export of a large number of intronless mRNAs. Length = 89

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	99.87
KOG0124|consensus	544		99.85
KOG1996|consensus	378		99.8
KOG0120|consensus	500		99.68
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	99.63
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	99.58
KOG0147|consensus	549		99.5
smart00361	70	RRM_1 RNA recognition motif.	99.47
KOG1548|consensus	382		99.46
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	99.26
KOG2202|consensus	260		99.04
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.65
PF14259	70	RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or	98.58
smart00360	71	RRM RNA recognition motif.	98.48
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	98.47
KOG0107|consensus	195		98.42
smart00362	72	RRM_2 RNA recognition motif.	98.39
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	98.38
cd00590	74	RRM RRM (RNA recognition motif), also known as RBD	98.33
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	98.2
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	98.17
TIGR01622	457	SF-CC1 splicing factor, CC1-like family. A homolog	97.9
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.87
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.86
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.85
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	97.83
TIGR01659	346	sex-lethal sex-lethal family splicing factor. This	97.79
KOG0124|consensus	544		97.79
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	97.79
PLN03120	260	nucleic acid binding protein; Provisional	97.69
KOG4207|consensus	256		97.68
TIGR01645	612	half-pint poly-U binding splicing factor, half-pin	97.58
TIGR01642	509	U2AF_lg U2 snRNP auxilliary factor, large subunit,	97.58
KOG0125|consensus	376		97.56
COG0724	306	RNA-binding proteins (RRM domain) [General functio	97.47
KOG0114|consensus	124		97.39
KOG0148|consensus	321		97.32
KOG0148|consensus	321		97.28
PLN03121	243	nucleic acid binding protein; Provisional	97.15
KOG0108|consensus	435		97.13
KOG0127|consensus	678		97.03
KOG0123|consensus	369		96.82
COG5175	480	MOT2 Transcriptional repressor [Transcription]	96.78
KOG0144|consensus	510		96.67
KOG0113|consensus	335		96.61
TIGR01648	578	hnRNP-R-Q heterogeneous nuclear ribonucleoprotein	96.6
KOG0117|consensus	506		96.55
PLN03213	759	repressor of silencing 3; Provisional	96.15
KOG0122|consensus	270		96.03
PF05172	100	Nup35_RRM: Nup53/35/40-type RNA recognition motif;	96.03
KOG1456|consensus	494		95.89
KOG0105|consensus	241		95.88
KOG0109|consensus	346		95.81
KOG4206|consensus	221		95.72
KOG0144|consensus	510		95.46
PF14605	53	Nup35_RRM_2: Nup53/35/40-type RNA recognition moti	95.01
KOG0145|consensus	360		94.97
KOG4660|consensus	549		94.81
KOG0110|consensus	725		94.66
KOG2314|consensus	698		94.62
KOG4208|consensus	214		94.62
KOG0123|consensus	369		94.46
KOG0121|consensus	153		94.46
KOG0145|consensus	360		94.3
KOG4209|consensus	231		93.71
KOG0117|consensus	506		92.3
KOG0132|consensus	894		92.18
PF08952	146	DUF1866: Domain of unknown function (DUF1866) ; In	91.56
KOG0149|consensus	247		91.46
KOG1190|consensus	492		91.32
KOG0127|consensus	678		91.26
KOG0126|consensus	219		91.07
PF08777	105	RRM_3: RNA binding motif; InterPro: IPR014886 This	91.05
PF15023	166	DUF4523: Protein of unknown function (DUF4523)	90.44
KOG0131|consensus	203		90.24
KOG0130|consensus	170		89.69
KOG0146|consensus	371		89.38
KOG4661|consensus	940		89.28
KOG4285|consensus	350		89.18
PF04847	184	Calcipressin: Calcipressin; InterPro: IPR006931 Ca	89.11
KOG0533|consensus	243		88.26
KOG0111|consensus	298		88.05
KOG0106|consensus	216		86.96
KOG4212|consensus	608		86.77
KOG0415|consensus	479		84.48
KOG0147|consensus	549		83.34
KOG0146|consensus	371		82.1
KOG0110|consensus	725		81.8
KOG1190|consensus	492		81.05
KOG0153|consensus	377		80.95
PF11767	66	SET_assoc: Histone lysine methyltransferase SET as	80.41

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=99.87  E-value=2.1e-22  Score=174.56  Aligned_cols=82  Identities=50%  Similarity=0.801  Sum_probs=76.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|++||++||+|||.|++|+|+.+++.+..+.+++|+|||+|++.++|.+|++               .||||||+||+|
T Consensus       531 dl~eDV~eEC~K~G~V~~v~I~~~~~~~~~~~~~~g~VfV~F~~~~~A~~A~~---------------~LnGR~F~GR~V  595 (612)
T TIGR01645       531 FLEGEIREECGKFGVVDRVIINFEKQGEEEDAEIIVKIFVEFSDSMEVDRAKA---------------ALDGRFFGGRTV  595 (612)
T ss_pred             HHHHHHHHHhhcCceeEEEEEecCCCCccccccceEEEEEEECCHHHHHHHHH---------------HhcCCeECCeEE
Confidence            58999999999999999999999776545566789999999999999999999               999999999999


Q ss_pred             EEEEeccccccccCCCC
Q psy2134          88 RAELYDQSLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~~~f~~~~~~~  104 (104)
                      .|+|||+++|+++||+|
T Consensus       596 ~a~~yd~~~f~~~~l~~  612 (612)
T TIGR01645       596 VAEAYDQILFDHADLSG  612 (612)
T ss_pred             EEEEcCHHHhhccccCC
Confidence            99999999999999987

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>KOG0124|consensus

Probab=99.85  E-value=1.2e-21  Score=165.07  Aligned_cols=82  Identities=50%  Similarity=0.818  Sum_probs=79.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|+.||++||+|||.|.+|.||++++++.++.+-+|||||+|+...++.+|..               +||||||+||.|
T Consensus       463 ~LegEi~EECgKfG~V~rViI~nekq~e~edaeiiVKIFVefS~~~e~~rak~---------------ALdGRfFgGr~V  527 (544)
T KOG0124|consen  463 DLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEIIVKIFVEFSIASETHRAKQ---------------ALDGRFFGGRKV  527 (544)
T ss_pred             HHHHHHHHHHhcccceeEEEEEecccccccchhhhheeeeeechhhHHHHHHH---------------hhccceecCcee
Confidence            68999999999999999999999999988889999999999999999999999               899999999999


Q ss_pred             EEEEeccccccccCCCC
Q psy2134          88 RAELYDQSLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~~~f~~~~~~~  104 (104)
                      .|+.||+..|++.||||
T Consensus       528 vAE~YDQ~~FD~~Dlsg  544 (544)
T KOG0124|consen  528 VAEVYDQERFDNSDLSG  544 (544)
T ss_pred             ehhhhhhhcccccccCC
Confidence            99999999999999997

>KOG1996|consensus

Probab=99.80  E-value=5.2e-20  Score=151.31  Aligned_cols=80  Identities=31%  Similarity=0.560  Sum_probs=72.8

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      -+|++|+.+||+|||+|.+|.||..+..+   .+..|+|||+|+.+++|.+|+-               .||||+|+||+
T Consensus       297 ~elede~keEceKyg~V~~viifeip~~p---~deavRiFveF~r~e~aiKA~V---------------dlnGRyFGGr~  358 (378)
T KOG1996|consen  297 EELEDETKEECEKYGKVGNVIIFEIPSQP---EDEAVRIFVEFERVESAIKAVV---------------DLNGRYFGGRV  358 (378)
T ss_pred             HHHHHHHHHHHHhhcceeeEEEEecCCCc---cchhheeeeeeccHHHHHHHHH---------------hcCCceeccee
Confidence            38999999999999999999999975543   3467999999999999999999               99999999999


Q ss_pred             EEEEEeccccccccCCCC
Q psy2134          87 VRAELYDQSLFDHNDFSG  104 (104)
Q Consensus        87 V~a~~yd~~~f~~~~~~~  104 (104)
                      |.|.||+.++|+.++|.+
T Consensus       359 v~A~Fyn~ekfs~~ela~  376 (378)
T KOG1996|consen  359 VSACFYNLEKFSNLELAE  376 (378)
T ss_pred             eeheeccHHhhhhhhhhh
Confidence            999999999999999863

>KOG0120|consensus

Probab=99.68  E-value=6.1e-17  Score=138.44  Aligned_cols=83  Identities=28%  Similarity=0.453  Sum_probs=75.4

Q ss_pred             ehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134           5 EKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG   84 (104)
Q Consensus         5 erv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G   84 (104)
                      |..+|.++++.||+|||.|.+|.|+++.. ......|.|||||+|++.++|++|..               +|+||.|++
T Consensus       418 EyeeIlEdvr~ec~k~g~v~~v~ipr~~~-~~~~~~G~GkVFVefas~ed~qrA~~---------------~L~GrKF~n  481 (500)
T KOG0120|consen  418 EYEEILEDVRTECAKFGAVRSVEIPRPYP-DENPVPGTGKVFVEFADTEDSQRAME---------------ELTGRKFAN  481 (500)
T ss_pred             HHHHHHHHHHHHhcccCceeEEecCCCCC-CCCcCCCcccEEEEecChHHHHHHHH---------------HccCceeCC
Confidence            45689999999999999999999998743 23456799999999999999999999               999999999


Q ss_pred             eEEEEEEeccccccccCCC
Q psy2134          85 RMVRAELYDQSLFDHNDFS  103 (104)
Q Consensus        85 R~V~a~~yd~~~f~~~~~~  103 (104)
                      |+|.|.|||+++|..++|+
T Consensus       482 RtVvtsYydeDkY~~r~~~  500 (500)
T KOG0120|consen  482 RTVVASYYDEDKYHAREFE  500 (500)
T ss_pred             cEEEEEecCHHHhhccccC
Confidence            9999999999999999874

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=99.63  E-value=9.1e-16  Score=124.49  Aligned_cols=80  Identities=25%  Similarity=0.509  Sum_probs=69.8

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .+|.+||++||++||.|++|+|+.+.... ....+.|.+||+|.+.++|.+|+.               +||||+|+||.
T Consensus       430 ~~~~edl~~~f~~~G~v~~v~i~~~~~~~-~~~~~~G~~fV~F~~~e~A~~A~~---------------~lnGr~~~gr~  493 (509)
T TIGR01642       430 EEIYEDVKTEFSKYGPLINIVIPRPNGDR-NSTPGVGKVFLEYADVRSAEKAME---------------GMNGRKFNDRV  493 (509)
T ss_pred             HHHHHHHHHHHHhcCCeeEEEeeccCcCC-CcCCCcceEEEEECCHHHHHHHHH---------------HcCCCEECCeE
Confidence            45778999999999999999998763321 223578899999999999999999               99999999999


Q ss_pred             EEEEEeccccccccCC
Q psy2134          87 VRAELYDQSLFDHNDF  102 (104)
Q Consensus        87 V~a~~yd~~~f~~~~~  102 (104)
                      |.+.|||++.|..++|
T Consensus       494 v~~~~~~~~~~~~~~~  509 (509)
T TIGR01642       494 VVAAFYGEDCYKAGDY  509 (509)
T ss_pred             EEEEEeCHHHhhccCC
Confidence            9999999999998875

Members of this subfamily are found in plants, metazoa and fungi.

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=99.58  E-value=3.5e-15  Score=119.92  Aligned_cols=71  Identities=28%  Similarity=0.505  Sum_probs=63.2

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .+|.+||++||++||.|++|.|..+..        .|.+||+|.+.++|..|++               +||||+|+||.
T Consensus       383 ~~~~~dv~~e~~k~G~v~~v~v~~~~~--------~G~~fV~F~~~e~A~~A~~---------------~lnGr~f~gr~  439 (457)
T TIGR01622       383 NEILDDVKEECSKYGGVVHIYVDTKNS--------AGKIYLKFSSVDAALAAFQ---------------ALNGRYFGGKM  439 (457)
T ss_pred             HHHHHHHHHHHHhcCCeeEEEEeCCCC--------ceeEEEEECCHHHHHHHHH---------------HhcCcccCCeE
Confidence            367899999999999999998875332        3789999999999999999               99999999999


Q ss_pred             EEEEEecccccccc
Q psy2134          87 VRAELYDQSLFDHN  100 (104)
Q Consensus        87 V~a~~yd~~~f~~~  100 (104)
                      |.+.|++++.|...
T Consensus       440 i~~~~~~~~~~~~~  453 (457)
T TIGR01622       440 ITAAFVVNDVYDMS  453 (457)
T ss_pred             EEEEEEcHHHHHhh
Confidence            99999999998764

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>KOG0147|consensus

Probab=99.50  E-value=2.9e-14  Score=123.03  Aligned_cols=69  Identities=28%  Similarity=0.391  Sum_probs=61.6

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .+|.+||.|||+|||.|.+  |++++++       .+.|||+|.+.+.|..|+.               +||||||+|||
T Consensus       464 ~eI~edV~Eec~k~g~v~h--i~vd~ns-------~g~VYvrc~s~~~A~~a~~---------------alhgrWF~gr~  519 (549)
T KOG0147|consen  464 QEIREDVIEECGKHGKVCH--IFVDKNS-------AGCVYVRCPSAEAAGTAVK---------------ALHGRWFAGRM  519 (549)
T ss_pred             hHHHHHHHHHHHhcCCeeE--EEEccCC-------CceEEEecCcHHHHHHHHH---------------HHhhhhhccce
Confidence            4799999999999999966  7777764       2689999999999999999               99999999999


Q ss_pred             EEEEEeccccccc
Q psy2134          87 VRAELYDQSLFDH   99 (104)
Q Consensus        87 V~a~~yd~~~f~~   99 (104)
                      |.|.|.+...|..
T Consensus       520 Ita~~~~~~~Y~~  532 (549)
T KOG0147|consen  520 ITAKYLPLERYHS  532 (549)
T ss_pred             eEEEEeehhhhhh
Confidence            9999999887754

>smart00361 RRM_1 RNA recognition motif

Probab=99.47  E-value=3.3e-13  Score=85.74  Aligned_cols=66  Identities=30%  Similarity=0.523  Sum_probs=54.0

Q ss_pred             eehhHHHHHhhhCCceeEEE-EecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVV-IYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~-I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      +|++++++||++||+|.+|. |+.+++..  .....+.+||+|.+.++|.+|+.               .||||+|+||.
T Consensus         4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~--~~~~rG~~fV~f~~~~dA~~A~~---------------~l~g~~~~gr~   66 (70)
T smart00361        4 DFEREFSEEEEYFGEVGKINKIYIDNVGY--ENHKRGNVYITFERSEDAARAIV---------------DLNGRYFDGRT   66 (70)
T ss_pred             hHHHHHHHHHHhcCCeeEEEEEEeCCCCC--CCCCcEEEEEEECCHHHHHHHHH---------------HhCCCEECCEE
Confidence            68899999999999999985 55544321  11234789999999999999999               99999999999


Q ss_pred             EEEE
Q psy2134          87 VRAE   90 (104)
Q Consensus        87 V~a~   90 (104)
                      |.++
T Consensus        67 l~~~   70 (70)
T smart00361       67 VKAE   70 (70)
T ss_pred             EEeC
Confidence            9873

>KOG1548|consensus

Probab=99.46  E-value=1.4e-13  Score=114.45  Aligned_cols=65  Identities=31%  Similarity=0.574  Sum_probs=59.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|++|+++||+|||+|.+|+||..+|.        |.+-|+|.+.++|..|++               .|+||||+||+|
T Consensus       288 dlkedl~eec~K~G~v~~vvv~d~hPd--------GvvtV~f~n~eeA~~ciq---------------~m~GR~fdgRql  344 (382)
T KOG1548|consen  288 DLKEDLTEECEKFGQVRKVVVYDRHPD--------GVVTVSFRNNEEADQCIQ---------------TMDGRWFDGRQL  344 (382)
T ss_pred             HHHHHHHHHHHHhCCcceEEEeccCCC--------ceeEEEeCChHHHHHHHH---------------HhcCeeecceEE
Confidence            689999999999999999999987662        346789999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .|+.||..
T Consensus       345 ~A~i~DG~  352 (382)
T KOG1548|consen  345 TASIWDGK  352 (382)
T ss_pred             EEEEeCCc
Confidence            99999874

>PF13893 RRM_5: RNA recognition motif

Probab=99.26  E-value=6.3e-11  Score=71.54  Aligned_cols=55  Identities=31%  Similarity=0.515  Sum_probs=47.5

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL   91 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~   91 (104)
                      +.+.|++||.|.+|.+...+.         +.+||+|++.++|..|+.               .|||+.|.|+.+.+.|
T Consensus         1 L~~~f~~fG~V~~i~~~~~~~---------~~a~V~f~~~~~A~~a~~---------------~l~~~~~~g~~l~V~~   55 (56)
T PF13893_consen    1 LYKLFSKFGEVKKIKIFKKKR---------GFAFVEFASVEDAQKAIE---------------QLNGRQFNGRPLKVSY   55 (56)
T ss_dssp             HHHHHTTTS-EEEEEEETTST---------TEEEEEESSHHHHHHHHH---------------HHTTSEETTEEEEEEE
T ss_pred             ChHHhCCcccEEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcEEEEEE
Confidence            356799999999999987651         369999999999999999               9999999999999875

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

>KOG2202|consensus

Probab=99.04  E-value=5.5e-11  Score=95.41  Aligned_cols=72  Identities=26%  Similarity=0.521  Sum_probs=64.5

Q ss_pred             eehhHHHHHhh-hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDE-AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~-kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      +.++|+..|++ |||.|++++|...-     ..+.++.|||+|...++|++|++               .||||||+|+.
T Consensus        80 efyEd~f~E~~~kygEiee~~Vc~Nl-----~~hl~GNVYV~f~~Ee~ae~a~~---------------~lnnRw~~G~p  139 (260)
T KOG2202|consen   80 EFYEDVFTELEDKYGEIEELNVCDNL-----GDHLVGNVYVKFRSEEDAEAALE---------------DLNNRWYNGRP  139 (260)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhccc-----chhhhhhhhhhcccHHHHHHHHH---------------HHcCccccCCc
Confidence            56899999999 99999999887643     34688999999999999999999               99999999999


Q ss_pred             EEEEEeccccccc
Q psy2134          87 VRAELYDQSLFDH   99 (104)
Q Consensus        87 V~a~~yd~~~f~~   99 (104)
                      |.|+|-+...|..
T Consensus       140 i~ae~~pvT~~re  152 (260)
T KOG2202|consen  140 IHAELSPVTDFRE  152 (260)
T ss_pred             ceeeecCcCchhh
Confidence            9999999998864

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.65  E-value=1.8e-07  Score=72.54  Aligned_cols=67  Identities=21%  Similarity=0.196  Sum_probs=56.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+++++-+++||.|++|.|..+..+.    ...|-.||+|.+.++|..|+.               +|||+.|+||.|+
T Consensus       282 ~e~~L~~~F~~fG~v~~v~i~~d~~t~----~skG~aFV~F~~~~~A~~Ai~---------------~lnG~~~~gr~i~  342 (352)
T TIGR01661       282 DETVLWQLFGPFGAVQNVKIIRDLTTN----QCKGYGFVSMTNYDEAAMAIL---------------SLNGYTLGNRVLQ  342 (352)
T ss_pred             CHHHHHHHHHhCCCeEEEEEeEcCCCC----CccceEEEEECCHHHHHHHHH---------------HhCCCEECCeEEE
Confidence            467888889999999999998765321    124568999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      ..|...
T Consensus       343 V~~~~~  348 (352)
T TIGR01661       343 VSFKTN  348 (352)
T ss_pred             EEEccC
Confidence            998753

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PF14259 RRM_6: RNA recognition motif (a

Probab=98.58  E-value=7.9e-07  Score=54.61  Aligned_cols=60  Identities=30%  Similarity=0.388  Sum_probs=51.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+.+.++.||.|.+|.+...++     ....+..||+|+++++|..|++               .++|..|.||.|.
T Consensus        11 ~~~~l~~~f~~~g~v~~v~~~~~~~-----~~~~~~a~v~f~~~~~a~~al~---------------~~~~~~~~g~~l~   70 (70)
T PF14259_consen   11 TEEDLRNFFSRFGPVEKVRLIKNKD-----GQSRGFAFVEFSSEEDAKRALE---------------LLNGKEIDGRKLR   70 (70)
T ss_dssp             -HHHHHHHCTTSSBEEEEEEEESTT-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred             CHHHHHHHHHhcCCcceEEEEeeec-----cccCCEEEEEeCCHHHHHHHHH---------------HCCCcEECCEEcC
Confidence            3578999999999999999987644     1456789999999999999999               8889999999874

k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....

>smart00360 RRM RNA recognition motif

Probab=98.48  E-value=1.6e-06  Score=50.04  Aligned_cols=62  Identities=27%  Similarity=0.393  Sum_probs=50.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|++.-++.||.|..+.|+..+..    ....+..||+|.+.++|..|+.               .|+|..|.|+.+.
T Consensus         9 ~~~~l~~~f~~~g~v~~~~i~~~~~~----~~~~~~a~v~f~~~~~a~~a~~---------------~~~~~~~~~~~~~   69 (71)
T smart00360        9 TEEELRELFSKFGKIESVRLVRDKDT----GKSKGFAFVEFESEEDAEKALE---------------ALNGKELDGRPLK   69 (71)
T ss_pred             CHHHHHHHHHhhCCEeEEEEEeCCCC----CCCCceEEEEeCCHHHHHHHHH---------------HcCCCeeCCcEEE
Confidence            35788888999999999998875431    1234578999999999999999               8999999998886


Q ss_pred             E
Q psy2134          89 A   89 (104)
Q Consensus        89 a   89 (104)
                      +
T Consensus        70 v   70 (71)
T smart00360       70 V   70 (71)
T ss_pred             e
Confidence            4

>PF00076 RRM_1: RNA recognition motif

Probab=98.47  E-value=2.3e-06  Score=51.30  Aligned_cols=60  Identities=25%  Similarity=0.387  Sum_probs=50.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++-.+.||.|..+.+.....     ....+-.||+|.+.++|..|++               .|||..+.|+.|+
T Consensus        11 t~~~l~~~f~~~g~i~~~~~~~~~~-----~~~~~~a~V~F~~~~~a~~a~~---------------~l~g~~~~~~~ir   70 (70)
T PF00076_consen   11 TEEELRDFFSQFGKIESIKVMRNSS-----GKSKGYAFVEFESEEDAEKALE---------------ELNGKKINGRKIR   70 (70)
T ss_dssp             SHHHHHHHHHTTSTEEEEEEEEETT-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred             CHHHHHHHHHHhhhccccccccccc-----ccccceEEEEEcCHHHHHHHHH---------------HcCCCEECccCcC
Confidence            4578888899999999998887522     1245678999999999999999               9999999999875

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>KOG0107|consensus

Probab=98.42  E-value=5.1e-07  Score=70.21  Aligned_cols=61  Identities=26%  Similarity=0.323  Sum_probs=53.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -+.|++.+..+||++-+|+|-..++         +-.||+|+++.+|..|+.               .|+|+.|.|..|+
T Consensus        23 ~k~eLE~~F~~yG~lrsvWvArnPP---------GfAFVEFed~RDA~DAvr---------------~LDG~~~cG~r~r   78 (195)
T KOG0107|consen   23 TKRELERAFSKYGPLRSVWVARNPP---------GFAFVEFEDPRDAEDAVR---------------YLDGKDICGSRIR   78 (195)
T ss_pred             chHHHHHHHHhcCcceeEEEeecCC---------CceEEeccCcccHHHHHh---------------hcCCccccCceEE
Confidence            4678888999999999988877544         358999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +++-.
T Consensus        79 VE~S~   83 (195)
T KOG0107|consen   79 VELST   83 (195)
T ss_pred             EEeec
Confidence            99764

>smart00362 RRM_2 RNA recognition motif

Probab=98.39  E-value=3.9e-06  Score=48.71  Aligned_cols=60  Identities=28%  Similarity=0.355  Sum_probs=49.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++-.++||.|..+.+...+.      ...+..||+|.+..+|..|+.               .|+|..|.|+.+.
T Consensus        12 ~~~~l~~~~~~~g~v~~~~~~~~~~------~~~~~~~v~f~~~~~a~~a~~---------------~~~~~~~~~~~i~   70 (72)
T smart00362       12 TEEDLKELFSKFGPIESVKIPKDTG------KSKGFAFVEFESEEDAEKAIE---------------ALNGTKLGGRPLR   70 (72)
T ss_pred             CHHHHHHHHHhcCCEEEEEEecCCC------CCCceEEEEeCCHHHHHHHHH---------------HhCCcEECCEEEe
Confidence            3578888899999999988886541      234568999999999999999               8999999998886


Q ss_pred             E
Q psy2134          89 A   89 (104)
Q Consensus        89 a   89 (104)
                      +
T Consensus        71 v   71 (72)
T smart00362       71 V   71 (72)
T ss_pred             e
Confidence            5

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=98.38  E-value=3.4e-06  Score=61.01  Aligned_cols=65  Identities=17%  Similarity=0.202  Sum_probs=55.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..++.+.    ...+-.||+|++.++|+.|++               .|||..+.||.|.
T Consensus        47 te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kGfaFV~F~~~e~A~~Al~---------------~lng~~i~Gr~l~  107 (144)
T PLN03134         47 DDASLRDAFAHFGDVVDAKVIVDRETG----RSRGFGFVNFNDEGAATAAIS---------------EMDGKELNGRHIR  107 (144)
T ss_pred             CHHHHHHHHhcCCCeEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            367899999999999999998765421    234678999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+=
T Consensus       108 V~~a  111 (144)
T PLN03134        108 VNPA  111 (144)
T ss_pred             EEeC
Confidence            8764

>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability

Probab=98.33  E-value=9.1e-06  Score=47.37  Aligned_cols=62  Identities=32%  Similarity=0.430  Sum_probs=51.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+++++-++.+|.|.++.+...+..     ...+..||+|.+.++|..|++               .|+|..|.|+.+.
T Consensus        12 ~~~~i~~~~~~~g~i~~~~~~~~~~~-----~~~~~~~v~f~s~~~a~~a~~---------------~~~~~~~~~~~~~   71 (74)
T cd00590          12 TEEDLRELFSKFGKVESVRIVRDKDT-----KSKGFAFVEFEDEEDAEKALE---------------ALNGKELGGRPLR   71 (74)
T ss_pred             CHHHHHHHHHhcCCEEEEEEeeCCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence            35788888999999999888865432     234678999999999999999               9999999999988


Q ss_pred             EE
Q psy2134          89 AE   90 (104)
Q Consensus        89 a~   90 (104)
                      +.
T Consensus        72 v~   73 (74)
T cd00590          72 VE   73 (74)
T ss_pred             Ee
Confidence            65

This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=98.20  E-value=6.9e-06  Score=68.69  Aligned_cols=66  Identities=20%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++.+++||.|.++.|..+...     ...+-.||.|++.++|.+|+.               .|||+.|.|+.+
T Consensus       297 ~~~~~L~~~F~~~G~i~~~~i~~d~~g-----~~~g~gfV~f~~~~~A~~A~~---------------~~~g~~~~gk~l  356 (562)
T TIGR01628       297 VTDEKLRELFSECGEITSAKVMLDEKG-----VSRGFGFVCFSNPEEANRAVT---------------EMHGRMLGGKPL  356 (562)
T ss_pred             cCHHHHHHHHHhcCCeEEEEEEECCCC-----CcCCeEEEEeCCHHHHHHHHH---------------HhcCCeeCCcee
Confidence            346889999999999999999876321     123467999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus       357 ~V~~a~  362 (562)
T TIGR01628       357 YVALAQ  362 (562)
T ss_pred             EEEecc
Confidence            988754

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=98.17  E-value=1.3e-05  Score=62.27  Aligned_cols=66  Identities=20%  Similarity=0.280  Sum_probs=55.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|..++...    .-.+-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        16 ~e~~l~~~F~~~G~i~~v~i~~d~~~g----~s~g~afV~f~~~~~A~~Ai~---------------~l~g~~l~g~~i~   76 (352)
T TIGR01661        16 TQEEIRSLFTSIGEIESCKLVRDKVTG----QSLGYGFVNYVRPEDAEKAVN---------------SLNGLRLQNKTIK   76 (352)
T ss_pred             CHHHHHHHHHccCCEEEEEEEEcCCCC----ccceEEEEEECcHHHHHHHHh---------------hcccEEECCeeEE
Confidence            467889999999999999998765421    134678999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      .++-.
T Consensus        77 v~~a~   81 (352)
T TIGR01661        77 VSYAR   81 (352)
T ss_pred             EEeec
Confidence            88754

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>TIGR01622 SF-CC1 splicing factor, CC1-like family

Probab=97.90  E-value=8.6e-05  Score=60.03  Aligned_cols=65  Identities=23%  Similarity=0.312  Sum_probs=54.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++++++-+++||.|.+|.|......    ....+-.||+|.+.++|.+|+.               .|||-.+.|+.|.+
T Consensus       200 e~~l~~~f~~~G~i~~v~~~~d~~~----g~~~g~afV~f~~~e~A~~A~~---------------~l~g~~i~g~~i~v  260 (457)
T TIGR01622       200 EQELRQIFEPFGDIEDVQLHRDPET----GRSKGFGFIQFHDAEEAKEALE---------------VMNGFELAGRPIKV  260 (457)
T ss_pred             HHHHHHHHHhcCCeEEEEEEEcCCC----CccceEEEEEECCHHHHHHHHH---------------hcCCcEECCEEEEE
Confidence            5788888999999999999865442    1234568999999999999999               99999999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-.
T Consensus       261 ~~a~  264 (457)
T TIGR01622       261 GYAQ  264 (457)
T ss_pred             EEcc
Confidence            9843

A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.87  E-value=6.4e-05  Score=62.78  Aligned_cols=60  Identities=22%  Similarity=0.347  Sum_probs=47.6

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RMV   87 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~V   87 (104)
                      .+++++-+++||.|.+|+|+....        .+..||+|.+.++|.+|+.               .|||..+.|  +.+
T Consensus       110 ~~~L~~~F~~~G~V~~v~i~~~~~--------~~~afVef~~~~~A~~A~~---------------~Lng~~i~~~~~~l  166 (481)
T TIGR01649       110 LDVLYQIFNPYGKVLRIVTFTKNN--------VFQALVEFESVNSAQHAKA---------------ALNGADIYNGCCTL  166 (481)
T ss_pred             HHHHHHHHhccCCEEEEEEEecCC--------ceEEEEEECCHHHHHHHHH---------------HhcCCcccCCceEE
Confidence            467888899999999999986432        2468999999999999999               777777643  466


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      +..|-
T Consensus       167 ~v~~s  171 (481)
T TIGR01649       167 KIEYA  171 (481)
T ss_pred             EEEEe
Confidence            66653

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.86  E-value=7.9e-05  Score=62.22  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++-++.||.|.+|+|...+.         +-.||+|.+.++|..|+.               .|||..+.|+.+
T Consensus       288 vt~~~L~~lF~~yG~V~~vki~~~~~---------g~afV~f~~~~~A~~Ai~---------------~lng~~l~g~~l  343 (481)
T TIGR01649       288 VNCDRLFNLFCVYGNVERVKFMKNKK---------ETALIEMADPYQAQLALT---------------HLNGVKLFGKPL  343 (481)
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCceE
Confidence            34578888899999999999987532         358999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      ...+-.
T Consensus       344 ~v~~s~  349 (481)
T TIGR01649       344 RVCPSK  349 (481)
T ss_pred             EEEEcc
Confidence            998753

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.85  E-value=6.8e-05  Score=61.37  Aligned_cols=65  Identities=15%  Similarity=0.158  Sum_probs=53.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|++|.|..+..+.    .-.+-.||+|.+.++|.+|+.               .|||..+.++.|.
T Consensus       120 te~~L~~lF~~~G~V~~v~i~~d~~tg----~srGyaFVeF~~~e~A~~Ai~---------------~LnG~~l~gr~i~  180 (346)
T TIGR01659       120 TDRELYALFRTIGPINTCRIMRDYKTG----YSFGYAFVDFGSEADSQRAIK---------------NLNGITVRNKRLK  180 (346)
T ss_pred             CHHHHHHHHHhcCCEEEEEEEecCCCC----ccCcEEEEEEccHHHHHHHHH---------------HcCCCccCCceee
Confidence            367888889999999999997765421    123458999999999999999               8899999999998


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+-
T Consensus       181 V~~a  184 (346)
T TIGR01659       181 VSYA  184 (346)
T ss_pred             eecc
Confidence            8754

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=97.83  E-value=7.4e-05  Score=65.43  Aligned_cols=58  Identities=26%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             hhHHHHHhhhC--CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134          10 YNEKQSDDEAY--GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus        10 ~~ev~~Ec~ky--G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      ++++++.+++|  |.|++|.+...            -.||+|.+.++|.+|+.               .|||..|.|+.|
T Consensus       247 ee~L~~~F~~f~~G~I~rV~~~rg------------fAFVeF~s~e~A~kAi~---------------~lnG~~i~Gr~I  299 (578)
T TIGR01648       247 EEIIEKSFSEFKPGKVERVKKIRD------------YAFVHFEDREDAVKAMD---------------ELNGKELEGSEI  299 (578)
T ss_pred             HHHHHHHHHhcCCCceEEEEeecC------------eEEEEeCCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            57899999999  99999877542            47999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ++.+-..
T Consensus       300 ~V~~Akp  306 (578)
T TIGR01648       300 EVTLAKP  306 (578)
T ss_pred             EEEEccC
Confidence            9997754

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>TIGR01659 sex-lethal sex-lethal family splicing factor

Probab=97.79  E-value=0.00016  Score=59.18  Aligned_cols=67  Identities=25%  Similarity=0.270  Sum_probs=51.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~   86 (104)
                      =++|+++-+++||.|++|.|...+...    .-.+..||+|.+.++|++|+.               .|||..+.|  +.
T Consensus       206 tee~L~~~F~~fG~V~~v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~---------------~lng~~~~g~~~~  266 (346)
T TIGR01659       206 TDDQLDTIFGKYGQIVQKNILRDKLTG----TPRGVAFVRFNKREEAQEAIS---------------ALNNVIPEGGSQP  266 (346)
T ss_pred             cHHHHHHHHHhcCCEEEEEEeecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCccCCCcee
Confidence            367899999999999999998765321    123578999999999999999               777776655  56


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      +.+.+-.+
T Consensus       267 l~V~~a~~  274 (346)
T TIGR01659       267 LTVRLAEE  274 (346)
T ss_pred             EEEEECCc
Confidence            77665543

This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).

>KOG0124|consensus

Probab=97.79  E-value=4.6e-06  Score=71.52  Aligned_cols=69  Identities=38%  Similarity=0.584  Sum_probs=59.7

Q ss_pred             CCceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134           1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR   80 (104)
Q Consensus         1 ~g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR   80 (104)
                      ||.|.||+|++|.+.|-+.-..|+|  ||++...              =+....|+.|++   ||||+          ||
T Consensus       475 fG~V~rViI~nekq~e~edaeiiVK--IFVefS~--------------~~e~~rak~ALd---GRfFg----------Gr  525 (544)
T KOG0124|consen  475 FGAVNRVIIYNEKQGEEEDAEIIVK--IFVEFSI--------------ASETHRAKQALD---GRFFG----------GR  525 (544)
T ss_pred             ccceeEEEEEecccccccchhhhhe--eeeeech--------------hhHHHHHHHhhc---cceec----------Cc
Confidence            8999999999999999888777755  7776542              235688999999   99999          99


Q ss_pred             eeCCeEEEEEEecccccc
Q psy2134          81 FFAGRMVRAELYDQSLFD   98 (104)
Q Consensus        81 ~F~GR~V~a~~yd~~~f~   98 (104)
                      ....+.++.+.||.++++
T Consensus       526 ~VvAE~YDQ~~FD~~Dls  543 (544)
T KOG0124|consen  526 KVVAEVYDQERFDNSDLS  543 (544)
T ss_pred             eeehhhhhhhcccccccC
Confidence            999999999999999875

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=97.79  E-value=0.00014  Score=60.89  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=54.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++.+-+++||.|.+|.|..+..+.    ...+-.||.|.+.++|++|+.               .||+..+.|+.|+
T Consensus        13 te~~L~~~F~~~G~v~~v~v~~d~~t~----~s~G~afV~F~~~~~A~~Al~---------------~ln~~~i~gk~i~   73 (562)
T TIGR01628        13 TEAKLYDLFKPFGPVLSVRVCRDSVTR----RSLGYGYVNFQNPADAERALE---------------TMNFKRLGGKPIR   73 (562)
T ss_pred             CHHHHHHHHHhcCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeeEE
Confidence            367888889999999999998865431    124578999999999999999               8999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+.
T Consensus        74 i~~s   77 (562)
T TIGR01628        74 IMWS   77 (562)
T ss_pred             eecc
Confidence            8654

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>PLN03120 nucleic acid binding protein; Provisional

Probab=97.69  E-value=0.00022  Score=57.46  Aligned_cols=63  Identities=21%  Similarity=0.157  Sum_probs=52.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-.+.||.|++|.|+.+..+       -+--||.|.+.++|..|+.                |||..+.||.|
T Consensus        16 tTE~dLrefFS~~G~I~~V~I~~d~~~-------~GfAFVtF~d~eaAe~All----------------LnG~~l~gr~V   72 (260)
T PLN03120         16 ATERDIKEFFSFSGDIEYVEMQSENER-------SQIAYVTFKDPQGAETALL----------------LSGATIVDQSV   72 (260)
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeecCCC-------CCEEEEEeCcHHHHHHHHH----------------hcCCeeCCceE
Confidence            457899999999999999999876432       2468999999999999997                78888999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      ....-+
T Consensus        73 ~Vt~a~   78 (260)
T PLN03120         73 TITPAE   78 (260)
T ss_pred             EEEecc
Confidence            988764

>KOG4207|consensus

Probab=97.68  E-value=6.6e-05  Score=60.25  Aligned_cols=65  Identities=28%  Similarity=0.398  Sum_probs=54.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +--+++.--.+|||.|..|.|+.+.-..    +--+-.||.|.+-.+|+.|++               +|+|+..+||-+
T Consensus        25 Tspd~LrrvFekYG~vgDVyIPrdr~Tr----~sRgFaFVrf~~k~daedA~d---------------amDG~~ldgRel   85 (256)
T KOG4207|consen   25 TSPDDLRRVFEKYGRVGDVYIPRDRYTR----QSRGFAFVRFHDKRDAEDALD---------------AMDGAVLDGREL   85 (256)
T ss_pred             CCHHHHHHHHHHhCcccceecccccccc----cccceeEEEeeecchHHHHHH---------------hhcceeecccee
Confidence            3346778888999999999999876542    234678999999999999999               999999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+++
T Consensus        86 rVq~   89 (256)
T KOG4207|consen   86 RVQM   89 (256)
T ss_pred             eehh
Confidence            6654

>TIGR01645 half-pint poly-U binding splicing factor, half-pint family

Probab=97.58  E-value=0.00024  Score=62.79  Aligned_cols=65  Identities=14%  Similarity=0.280  Sum_probs=53.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++++++.+++||.|.+|.|..++.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||.|
T Consensus       119 ~tEe~Lr~lF~~fG~I~sV~I~~D~~Tg----kskGfAFVeF~s~e~A~~Ai~---------------~lnG~~i~GR~I  179 (612)
T TIGR01645       119 LREDTIRRAFDPFGPIKSINMSWDPATG----KHKGFAFVEYEVPEAAQLALE---------------QMNGQMLGGRNI  179 (612)
T ss_pred             CCHHHHHHHHHccCCEEEEEEeecCCCC----CcCCeEEEEeCcHHHHHHHHH---------------hcCCeEEeccee
Confidence            4467889899999999999997654321    234568999999999999999               899999999998


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      +...
T Consensus       180 kV~r  183 (612)
T TIGR01645       180 KVGR  183 (612)
T ss_pred             eecc
Confidence            8763

In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.

>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor

Probab=97.58  E-value=0.00053  Score=56.09  Aligned_cols=64  Identities=13%  Similarity=0.139  Sum_probs=52.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+++++-+++||.|..+.|.......    ...+-.||+|.+.++|..|+.               .|||..+.|+.|.+
T Consensus       309 ~~~l~~~f~~~G~i~~~~~~~~~~~g----~~~g~afv~f~~~~~a~~A~~---------------~l~g~~~~~~~l~v  369 (509)
T TIGR01642       309 EDQIKELLESFGDLKAFNLIKDIATG----LSKGYAFCEYKDPSVTDVAIA---------------ALNGKDTGDNKLHV  369 (509)
T ss_pred             HHHHHHHHHhcCCeeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHH---------------HcCCCEECCeEEEE
Confidence            56788889999999999887654321    124568999999999999999               99999999999988


Q ss_pred             EEe
Q psy2134          90 ELY   92 (104)
Q Consensus        90 ~~y   92 (104)
                      .+-
T Consensus       370 ~~a  372 (509)
T TIGR01642       370 QRA  372 (509)
T ss_pred             EEC
Confidence            764

Members of this subfamily are found in plants, metazoa and fungi.

>KOG0125|consensus

Probab=97.56  E-value=0.00022  Score=60.00  Aligned_cols=61  Identities=28%  Similarity=0.380  Sum_probs=50.1

Q ss_pred             hHHHHHhhhCCceeEEEE-ecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVI-YNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I-~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .|++.=.+|||+|..|.| +++..|.       |-=||.|+++++|.+|+.               .|||-.+-||+|.+
T Consensus       111 pDL~aMF~kfG~VldVEIIfNERGSK-------GFGFVTmen~~dadRARa---------------~LHgt~VEGRkIEV  168 (376)
T KOG0125|consen  111 PDLRAMFEKFGKVLDVEIIFNERGSK-------GFGFVTMENPADADRARA---------------ELHGTVVEGRKIEV  168 (376)
T ss_pred             ccHHHHHHhhCceeeEEEEeccCCCC-------ccceEEecChhhHHHHHH---------------HhhcceeeceEEEE
Confidence            467777899999999988 5555443       234999999999999999               99999999999987


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      ..-.
T Consensus       169 n~AT  172 (376)
T KOG0125|consen  169 NNAT  172 (376)
T ss_pred             eccc
Confidence            6543

>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]

Probab=97.47  E-value=0.00093  Score=46.39  Aligned_cols=66  Identities=24%  Similarity=0.353  Sum_probs=55.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++...+||.|..|.|......    ..--+..||.|.+.++|..|+.               .|||-.|.||.+
T Consensus       127 ~~~~~l~~~F~~~g~~~~~~~~~d~~~----~~~~g~~~v~f~~~~~~~~a~~---------------~~~~~~~~~~~~  187 (306)
T COG0724         127 VTEEDLRELFKKFGPVKRVRLVRDRET----GKSRGFAFVEFESEESAEKAIE---------------ELNGKELEGRPL  187 (306)
T ss_pred             CCHHHHHHHHHhcCceeEEEeeecccc----CccCceEEEEecCHHHHHHHHH---------------HcCCCeECCcee
Confidence            457889999999999999988876521    1224568999999999999999               999999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      ....-
T Consensus       188 ~v~~~  192 (306)
T COG0724         188 RVQKA  192 (306)
T ss_pred             Eeecc
Confidence            98874

>KOG0114|consensus

Probab=97.39  E-value=0.00071  Score=49.55  Aligned_cols=64  Identities=23%  Similarity=0.288  Sum_probs=54.8

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+-+=..+||+|..|.|=+++..       .|..||-++++.+|.+|++               .|+|=.+.+|-+.+
T Consensus        32 seemydlFGkyg~IrQIRiG~~k~T-------rGTAFVVYedi~dAk~A~d---------------hlsg~n~~~ryl~v   89 (124)
T KOG0114|consen   32 SEEMYDLFGKYGTIRQIRIGNTKET-------RGTAFVVYEDIFDAKKACD---------------HLSGYNVDNRYLVV   89 (124)
T ss_pred             HHHHHHHhhcccceEEEEecCccCc-------CceEEEEehHhhhHHHHHH---------------HhcccccCCceEEE
Confidence            4555555789999999999887664       3578999999999999999               99999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .||...
T Consensus        90 lyyq~~   95 (124)
T KOG0114|consen   90 LYYQPE   95 (124)
T ss_pred             EecCHH
Confidence            999764

>KOG0148|consensus

Probab=97.32  E-value=0.00084  Score=55.54  Aligned_cols=60  Identities=18%  Similarity=0.304  Sum_probs=53.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-+++++.-.+.||+|..|.||.++          +-.||+|++-+.|.+|+.               .+||-..+|..|
T Consensus       176 lte~~mr~~Fs~fG~I~EVRvFk~q----------GYaFVrF~tkEaAahAIv---------------~mNntei~G~~V  230 (321)
T KOG0148|consen  176 LTEDLMRQTFSPFGPIQEVRVFKDQ----------GYAFVRFETKEAAAHAIV---------------QMNNTEIGGQLV  230 (321)
T ss_pred             ccHHHHHHhcccCCcceEEEEeccc----------ceEEEEecchhhHHHHHH---------------HhcCceeCceEE
Confidence            4467888889999999999999864          368999999999999999               999999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      +|..=
T Consensus       231 kCsWG  235 (321)
T KOG0148|consen  231 RCSWG  235 (321)
T ss_pred             EEecc
Confidence            98743

>KOG0148|consensus

Probab=97.28  E-value=0.00061  Score=56.34  Aligned_cols=62  Identities=21%  Similarity=0.373  Sum_probs=51.2

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      +++++-..+||.|...+|.++.+..    ...+--||+|-+.++|+.|++               .|||-|.++|.|+.-
T Consensus        77 e~lr~aF~pFGevS~akvirD~~T~----KsKGYgFVSf~~k~dAEnAI~---------------~MnGqWlG~R~IRTN  137 (321)
T KOG0148|consen   77 EKLREAFAPFGEVSDAKVIRDMNTG----KSKGYGFVSFPNKEDAENAIQ---------------QMNGQWLGRRTIRTN  137 (321)
T ss_pred             HHHHHHhccccccccceEeecccCC----cccceeEEeccchHHHHHHHH---------------HhCCeeeccceeecc
Confidence            4455556799999999998876532    345667999999999999999               999999999999975


Q ss_pred             E
Q psy2134          91 L   91 (104)
Q Consensus        91 ~   91 (104)
                      .
T Consensus       138 W  138 (321)
T KOG0148|consen  138 W  138 (321)
T ss_pred             c
Confidence            3

>PLN03121 nucleic acid binding protein; Provisional

Probab=97.15  E-value=0.0027  Score=50.97  Aligned_cols=64  Identities=17%  Similarity=0.137  Sum_probs=54.2

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      ..=++|+++-.+.||.|.+|.|..+...       .+.-||+|.++++|..|+.                |||-.+.++.
T Consensus        16 ~tTE~dLrefFS~~G~I~~V~I~~D~et-------~gfAfVtF~d~~aaetAll----------------LnGa~l~d~~   72 (243)
T PLN03121         16 KATEKDVYDFFSHCGAIEHVEIIRSGEY-------ACTAYVTFKDAYALETAVL----------------LSGATIVDQR   72 (243)
T ss_pred             CCCHHHHHHHHHhcCCeEEEEEecCCCc-------ceEEEEEECCHHHHHHHHh----------------cCCCeeCCce
Confidence            3457889999999999999999876432       2468999999999999886                8999999999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |...-+.
T Consensus        73 I~It~~~   79 (243)
T PLN03121         73 VCITRWG   79 (243)
T ss_pred             EEEEeCc
Confidence            9998865

>KOG0108|consensus

Probab=97.13  E-value=0.0013  Score=56.21  Aligned_cols=71  Identities=21%  Similarity=0.153  Sum_probs=58.0

Q ss_pred             ehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134           5 EKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG   84 (104)
Q Consensus         5 erv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G   84 (104)
                      -.-.-++++.+-|++.|.|..+++-.+..+..    -.|--|++|.++++|..|+.               .|||+.|.|
T Consensus        27 p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~----~~G~~f~~~~~~~~~~~a~~---------------~lNg~~~~g   87 (435)
T KOG0108|consen   27 PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGK----PKGFGFCEFTDEETAERAIR---------------NLNGAEFNG   87 (435)
T ss_pred             CCcccHHHHHHHHhccCccceeeecccccCCC----cCceeeEecCchhhHHHHHH---------------hcCCcccCC
Confidence            33456788999999999999988866655422    24567999999999999999               999999999


Q ss_pred             eEEEEEEecc
Q psy2134          85 RMVRAELYDQ   94 (104)
Q Consensus        85 R~V~a~~yd~   94 (104)
                      |.+++.|=..
T Consensus        88 r~l~v~~~~~   97 (435)
T KOG0108|consen   88 RKLRVNYASN   97 (435)
T ss_pred             ceEEeecccc
Confidence            9999886443

>KOG0127|consensus

Probab=97.03  E-value=0.0022  Score=57.22  Aligned_cols=61  Identities=26%  Similarity=0.372  Sum_probs=52.6

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      .+++-=|++||.|..|+||..+.+.     .-|-.||+|.+..+|..|+.               .|||-.|+||.|-+.
T Consensus       132 ~dLk~vFs~~G~V~Ei~IP~k~dgk-----lcGFaFV~fk~~~dA~~Al~---------------~~N~~~i~gR~VAVD  191 (678)
T KOG0127|consen  132 PDLKNVFSNFGKVVEIVIPRKKDGK-----LCGFAFVQFKEKKDAEKALE---------------FFNGNKIDGRPVAVD  191 (678)
T ss_pred             HHHHHHHhhcceEEEEEcccCCCCC-----ccceEEEEEeeHHHHHHHHH---------------hccCceecCceeEEe
Confidence            4778889999999999999655432     23778999999999999999               999999999999887


Q ss_pred             E
Q psy2134          91 L   91 (104)
Q Consensus        91 ~   91 (104)
                      +
T Consensus       192 W  192 (678)
T KOG0127|consen  192 W  192 (678)
T ss_pred             e
Confidence            5

>KOG0123|consensus

Probab=96.82  E-value=0.0055  Score=50.89  Aligned_cols=56  Identities=20%  Similarity=0.385  Sum_probs=47.1

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecc
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQ   94 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~   94 (104)
                      .+.||+|+++++-..+..      ..+. ||+|++.++|.+|+.               .|||+.+.|..|-...+..
T Consensus        97 f~~~g~ilS~kv~~~~~g------~kg~-FV~f~~e~~a~~ai~---------------~~ng~ll~~kki~vg~~~~  152 (369)
T KOG0123|consen   97 FSEFGNILSCKVATDENG------SKGY-FVQFESEESAKKAIE---------------KLNGMLLNGKKIYVGLFER  152 (369)
T ss_pred             HHhhcCeeEEEEEEcCCC------ceee-EEEeCCHHHHHHHHH---------------HhcCcccCCCeeEEeeccc
Confidence            578999999999887664      4677 999999999999999               8888888888887766543

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=96.78  E-value=0.0037  Score=53.52  Aligned_cols=59  Identities=19%  Similarity=0.463  Sum_probs=47.4

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEE
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAEL   91 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~   91 (104)
                      .+.||.|.||+|-...++... ..+-+-|||.|++-++|.+|+.               ..+|-..+||.++|.|
T Consensus       141 FGQyGkI~KIvvNkkt~s~ns-t~~h~gvYITy~~kedAarcIa---------------~vDgs~~DGr~lkatY  199 (480)
T COG5175         141 FGQYGKIKKIVVNKKTSSLNS-TASHAGVYITYSTKEDAARCIA---------------EVDGSLLDGRVLKATY  199 (480)
T ss_pred             hhhccceeEEEeccccccccc-ccccceEEEEecchHHHHHHHH---------------HhccccccCceEeeec
Confidence            578999999888655443222 2233558999999999999999               9999999999999986

>KOG0144|consensus

Probab=96.67  E-value=0.0019  Score=56.11  Aligned_cols=59  Identities=27%  Similarity=0.242  Sum_probs=46.9

Q ss_pred             ceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccch
Q psy2134           3 QVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF   66 (104)
Q Consensus         3 ~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~   66 (104)
                      .+.+..-++||++=|++||.|+.+.|-+....     ---|.+||+|++-+.|..|+++|||-+
T Consensus       131 ~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~-----~sRGcaFV~fstke~A~~Aika~ng~~  189 (510)
T KOG0144|consen  131 MLSKQCTENEVREIFSRFGHIEDCYILRDPDG-----LSRGCAFVKFSTKEMAVAAIKALNGTQ  189 (510)
T ss_pred             hccccccHHHHHHHHHhhCccchhhheecccc-----cccceeEEEEehHHHHHHHHHhhccce
Confidence            34455668899999999999999999875432     234679999999999999999666544

>KOG0113|consensus

Probab=96.61  E-value=0.01  Score=49.59  Aligned_cols=65  Identities=14%  Similarity=0.287  Sum_probs=53.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +-+.+++.|.++||+|.+|.|...+.+.    .-.+-.||+|++..+...|..               ..+|-.++||.|
T Consensus       113 T~EskLrreF~~YG~IkrirlV~d~vTg----kskGYAFIeye~erdm~~AYK---------------~adG~~Idgrri  173 (335)
T KOG0113|consen  113 TSESKLRREFEKYGPIKRIRLVRDKVTG----KSKGYAFIEYEHERDMKAAYK---------------DADGIKIDGRRI  173 (335)
T ss_pred             ccHHHHHHHHHhcCcceeEEEeeecccC----CccceEEEEeccHHHHHHHHH---------------hccCceecCcEE
Confidence            4467899999999999999887764431    234679999999999999999               888999999998


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+.+
T Consensus       174 ~VDv  177 (335)
T KOG0113|consen  174 LVDV  177 (335)
T ss_pred             EEEe
Confidence            7654

>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family

Probab=96.60  E-value=0.0073  Score=53.17  Aligned_cols=55  Identities=20%  Similarity=0.091  Sum_probs=42.8

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccch
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRF   66 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~   66 (104)
                      ..-++|+++-+++||+|.++.|..+...     ...+-.||+|.+.++|.+|+..||+..
T Consensus        69 ~~tEd~L~~~F~~~G~I~~vrl~~D~sG-----~sRGfaFV~F~~~e~A~~Ai~~lng~~  123 (578)
T TIGR01648        69 DLYEDELVPLFEKAGPIYELRLMMDFSG-----QNRGYAFVTFCGKEEAKEAVKLLNNYE  123 (578)
T ss_pred             CCCHHHHHHHHHhhCCEEEEEEEECCCC-----CccceEEEEeCCHHHHHHHHHHcCCCe
Confidence            3457889999999999999999876321     123568999999999999999555443

Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.

>KOG0117|consensus

Probab=96.55  E-value=0.0069  Score=52.83  Aligned_cols=58  Identities=22%  Similarity=0.292  Sum_probs=49.5

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++-++.+.++||.|++|+.+++            -.||-|++-++|.+|++               .|||.-..|.+|.+
T Consensus       273 eE~lk~~F~~~G~veRVkk~rD------------YaFVHf~eR~davkAm~---------------~~ngkeldG~~iEv  325 (506)
T KOG0117|consen  273 EETLKKLFNEFGKVERVKKPRD------------YAFVHFAEREDAVKAMK---------------ETNGKELDGSPIEV  325 (506)
T ss_pred             HHHHHHHHHhccceEEeecccc------------eeEEeecchHHHHHHHH---------------HhcCceecCceEEE
Confidence            3445566789999999999853            37999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+-.+
T Consensus       326 tLAKP  330 (506)
T KOG0117|consen  326 TLAKP  330 (506)
T ss_pred             EecCC
Confidence            88543

>PLN03213 repressor of silencing 3; Provisional

Probab=96.15  E-value=0.021  Score=51.13  Aligned_cols=62  Identities=19%  Similarity=0.158  Sum_probs=52.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCH--HHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKM--QEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~--~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      +-.+|++.=.+.||.|.+|.|++++.        -+-.||+|...  .++.+|+.               .|||-.+.||
T Consensus        22 VTEDDLravFSeFGsVkdVEIpRETG--------RGFAFVEMssdddaEeeKAIS---------------aLNGAEWKGR   78 (759)
T PLN03213         22 VGRDDLLKIFSPMGTVDAVEFVRTKG--------RSFAYIDFSPSSTNSLTKLFS---------------TYNGCVWKGG   78 (759)
T ss_pred             CCHHHHHHHHHhcCCeeEEEEecccC--------CceEEEEecCCcHHHHHHHHH---------------HhcCCeecCc
Confidence            44678888889999999999996543        56789999987  78999999               9999999999


Q ss_pred             EEEEEEe
Q psy2134          86 MVRAELY   92 (104)
Q Consensus        86 ~V~a~~y   92 (104)
                      .++..--
T Consensus        79 ~LKVNKA   85 (759)
T PLN03213         79 RLRLEKA   85 (759)
T ss_pred             eeEEeec
Confidence            9997643

>KOG0122|consensus

Probab=96.03  E-value=0.03  Score=45.76  Aligned_cols=65  Identities=20%  Similarity=0.271  Sum_probs=50.5

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++=..+||.|.+|.|-.++...    .-.|-.||.|.+-++|.+|++               .|||+-++.=.+++
T Consensus       203 E~dL~eLf~~fg~i~rvylardK~TG----~~kGFAFVtF~sRddA~rAI~---------------~LnG~gyd~LILrv  263 (270)
T KOG0122|consen  203 EDDLEELFRPFGPITRVYLARDKETG----LSKGFAFVTFESRDDAARAIA---------------DLNGYGYDNLILRV  263 (270)
T ss_pred             hhHHHHHhhccCccceeEEEEccccC----cccceEEEEEecHHHHHHHHH---------------HccCcccceEEEEE
Confidence            34454445699999999888877642    234678999999999999999               88888888877777


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      ++-.
T Consensus       264 Ewsk  267 (270)
T KOG0122|consen  264 EWSK  267 (270)
T ss_pred             EecC
Confidence            7543

>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []

Probab=96.03  E-value=0.056  Score=37.82  Aligned_cols=68  Identities=13%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEe-cCCC--CCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIY-NEKQ--SDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~-~~~~--~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      +.+.|-++.++||.|++..-. ....  .+.+.+.+.--|.|+|++..+|.+|+.                -||+.|+|.
T Consensus        18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~----------------~NG~i~~g~   81 (100)
T PF05172_consen   18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ----------------KNGTIFSGS   81 (100)
T ss_dssp             GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT----------------TTTEEETTC
T ss_pred             HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH----------------hCCeEEcCc
Confidence            456788899999999775300 0000  000112233468999999999999998                689999886


Q ss_pred             EEE-EEEe
Q psy2134          86 MVR-AELY   92 (104)
Q Consensus        86 ~V~-a~~y   92 (104)
                      .+. +.+.
T Consensus        82 ~mvGV~~~   89 (100)
T PF05172_consen   82 LMVGVKPC   89 (100)
T ss_dssp             EEEEEEE-
T ss_pred             EEEEEEEc
Confidence            444 4443

This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.

>KOG1456|consensus

Probab=95.89  E-value=0.012  Score=50.88  Aligned_cols=40  Identities=33%  Similarity=0.501  Sum_probs=33.7

Q ss_pred             HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134          16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG   64 (104)
Q Consensus        16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~   64 (104)
                      =|.-.|+|.+|+|+...         .+...|+|++++.|++|..+|||
T Consensus       142 Icnp~GkVlRIvIfkkn---------gVQAmVEFdsv~~AqrAk~alNG  181 (494)
T KOG1456|consen  142 ICNPQGKVLRIVIFKKN---------GVQAMVEFDSVEVAQRAKAALNG  181 (494)
T ss_pred             hcCCCCceEEEEEEecc---------ceeeEEeechhHHHHHHHhhccc
Confidence            38999999999999752         25789999999999999994444

>KOG0105|consensus

Probab=95.88  E-value=0.019  Score=45.82  Aligned_cols=62  Identities=23%  Similarity=0.253  Sum_probs=48.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      +.||+.=..|||.|..|.+-+++..+       .-.||+|+++.+|+.|+.               .-||=-|+|-.+++
T Consensus        20 ekeieDlFyKyg~i~~ieLK~r~g~p-------pfafVeFEd~RDAeDAiy---------------gRdGYdydg~rLRV   77 (241)
T KOG0105|consen   20 EKEIEDLFYKYGRIREIELKNRPGPP-------PFAFVEFEDPRDAEDAIY---------------GRDGYDYDGCRLRV   77 (241)
T ss_pred             hccHHHHHhhhcceEEEEeccCCCCC-------CeeEEEecCccchhhhhh---------------cccccccCcceEEE
Confidence            34666667899999998876655432       358999999999999999               55677799999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      +|=-
T Consensus        78 Efpr   81 (241)
T KOG0105|consen   78 EFPR   81 (241)
T ss_pred             Eecc
Confidence            8743

>KOG0109|consensus

Probab=95.81  E-value=0.015  Score=48.66  Aligned_cols=56  Identities=27%  Similarity=0.385  Sum_probs=49.6

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      -+|++.-.+|||+|+...|-+.            -.||.|.-+++|..|+.               .||||.|.|..+++
T Consensus        92 n~ElRa~fe~ygpviecdivkd------------y~fvh~d~~eda~~air---------------~l~~~~~~gk~m~v  144 (346)
T KOG0109|consen   92 NQELRAKFEKYGPVIECDIVKD------------YAFVHFDRAEDAVEAIR---------------GLDNTEFQGKRMHV  144 (346)
T ss_pred             CHHHhhhhcccCCceeeeeecc------------eeEEEEeeccchHHHHh---------------cccccccccceeee
Confidence            4788888999999999888653            47999999999999999               99999999999998


Q ss_pred             EEe
Q psy2134          90 ELY   92 (104)
Q Consensus        90 ~~y   92 (104)
                      .+-
T Consensus       145 q~s  147 (346)
T KOG0109|consen  145 QLS  147 (346)
T ss_pred             eee
Confidence            865

>KOG4206|consensus

Probab=95.72  E-value=0.028  Score=44.72  Aligned_cols=55  Identities=22%  Similarity=0.315  Sum_probs=44.8

Q ss_pred             HhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          16 DDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        16 Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      =.+.||+|..|+.+......       |..||.|.+.+.|..|+.               +|+|..|=|..++..|-
T Consensus        33 LFsqfG~ildI~a~kt~KmR-------GQA~VvFk~~~~As~A~r---------------~l~gfpFygK~mriqyA   87 (221)
T KOG4206|consen   33 LFSQFGKILDISAFKTPKMR-------GQAFVVFKETEAASAALR---------------ALQGFPFYGKPMRIQYA   87 (221)
T ss_pred             HHHhhCCeEEEEecCCCCcc-------CceEEEecChhHHHHHHH---------------HhcCCcccCchhheecc
Confidence            46789999999998776643       458999999999999999               77777777777776653

>KOG0144|consensus

Probab=95.46  E-value=0.034  Score=48.59  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             CceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhh
Q psy2134           2 GQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDAL   62 (104)
Q Consensus         2 g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~   62 (104)
                      |+|-|.--+.|+++=.++||.|..|.|.+++...    ...+..||+|.+.++|.+|++||
T Consensus        40 gqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~----~s~gcCFv~~~trk~a~~a~~Al   96 (510)
T KOG0144|consen   40 GQIPRTASEKDLRELFEKYGNVYEINLIKDKSTG----QSKGCCFVKYYTRKEADEAINAL   96 (510)
T ss_pred             ccCCccccHHHHHHHHHHhCceeEEEeecccccC----cccceEEEEeccHHHHHHHHHHh
Confidence            6777888889999999999999999999987643    34678999999999999999955

>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif

Probab=95.01  E-value=0.068  Score=32.99  Aligned_cols=41  Identities=12%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHH
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYAR   59 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~   59 (104)
                      ..+++..-...+|.|+++.+....+          -+||+|.+..+|++|+
T Consensus        13 ~~~~vl~~F~~fGeI~~~~~~~~~~----------~~~l~y~~~~~ae~Al   53 (53)
T PF14605_consen   13 LAEEVLEHFASFGEIVDIYVPESTN----------WMYLKYKSRKDAEKAL   53 (53)
T ss_pred             HHHHHHHHHHhcCCEEEEEcCCCCc----------EEEEEECCHHHHHhhC
Confidence            3456666778899999866652222          4999999999999985

>KOG0145|consensus

Probab=94.97  E-value=0.094  Score=43.85  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++=.+..|.|+++++.+++...  .  ..+-=||-|.++++|++|++               .|||=..-...|+.
T Consensus        55 qdE~rSLF~SiGeiEScKLvRDKitG--q--SLGYGFVNYv~p~DAe~Ain---------------tlNGLrLQ~KTIKV  115 (360)
T KOG0145|consen   55 QDELRSLFGSIGEIESCKLVRDKITG--Q--SLGYGFVNYVRPKDAEKAIN---------------TLNGLRLQNKTIKV  115 (360)
T ss_pred             HHHHHHHhhcccceeeeeeeeccccc--c--ccccceeeecChHHHHHHHh---------------hhcceeeccceEEE
Confidence            57888888899999999999987532  2  34556999999999999999               99999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      +|--+|
T Consensus       116 SyARPS  121 (360)
T KOG0145|consen  116 SYARPS  121 (360)
T ss_pred             EeccCC
Confidence            986554

>KOG4660|consensus

Probab=94.81  E-value=0.015  Score=51.39  Aligned_cols=56  Identities=29%  Similarity=0.341  Sum_probs=41.0

Q ss_pred             eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhh
Q psy2134           4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA   68 (104)
Q Consensus         4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~   68 (104)
                      |.+.+=++++..-.++||.|..  |-....     .++  -+||+|=|+.+|+.|+++||+|=++
T Consensus        83 l~~~Vsn~~L~~~f~~yGeir~--ir~t~~-----~~~--~~~v~FyDvR~A~~Alk~l~~~~~~  138 (549)
T KOG4660|consen   83 LPRSVSNDTLLRIFGAYGEIRE--IRETPN-----KRG--IVFVEFYDVRDAERALKALNRREIA  138 (549)
T ss_pred             cCCcCCHHHHHHHHHhhcchhh--hhcccc-----cCc--eEEEEEeehHhHHHHHHHHHHHHhh
Confidence            3455667888889999999988  433322     223  4899999999999999955555444

>KOG0110|consensus

Probab=94.66  E-value=0.17  Score=46.17  Aligned_cols=68  Identities=21%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .++++....++|.|..+.|...+.+.. -....|-.||+|.++++|..|++               +|+|-..+|+.|.+
T Consensus       529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~-k~lSmGfgFVEF~~~e~A~~a~k---------------~lqgtvldGH~l~l  592 (725)
T KOG0110|consen  529 LEDLEDLFSKQGTVLSIEISKKKDPAN-KYLSMGFGFVEFAKPESAQAALK---------------ALQGTVLDGHKLEL  592 (725)
T ss_pred             hhHHHHHHHhcCeEEEEEEeccccccc-cccccceeEEEecCHHHHHHHHH---------------HhcCceecCceEEE
Confidence            356677788999999998876544221 12234678999999999999999               99999999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-+
T Consensus       593 k~S~  596 (725)
T KOG0110|consen  593 KISE  596 (725)
T ss_pred             Eecc
Confidence            8765

>KOG2314|consensus

Probab=94.62  E-value=0.056  Score=48.67  Aligned_cols=54  Identities=17%  Similarity=0.218  Sum_probs=42.4

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      +..=.+|+|+++++.+|.+..+     --.|-+|++|.++.+|..|++               .|||..++...
T Consensus        81 l~kvfsk~gk~vn~~~P~~e~g-----gtkG~lf~E~~~~~~A~~aVK---------------~l~G~~ldknH  134 (698)
T KOG2314|consen   81 LTKVFSKAGKIVNMYYPIDEEG-----GTKGYLFVEYASMRDAKKAVK---------------SLNGKRLDKNH  134 (698)
T ss_pred             HHHHHHhhccccceeeccCccC-----CeeeEEEEEecChhhHHHHHH---------------hcccceecccc
Confidence            3445789999999888764432     146789999999999999999               88887777654

>KOG4208|consensus

Probab=94.62  E-value=0.076  Score=42.21  Aligned_cols=56  Identities=16%  Similarity=0.284  Sum_probs=47.9

Q ss_pred             CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEeccc
Q psy2134          21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQS   95 (104)
Q Consensus        21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~~   95 (104)
                      |.|.+++.-+.+..  .+  ..+-.||+|.+.+-|+-|..               .||+=.|.|+++.|++.+++
T Consensus        75 g~v~r~rlsRnkrT--GN--SKgYAFVEFEs~eVA~IaAE---------------TMNNYLl~e~lL~c~vmppe  130 (214)
T KOG4208|consen   75 GTVTRFRLSRNKRT--GN--SKGYAFVEFESEEVAKIAAE---------------TMNNYLLMEHLLECHVMPPE  130 (214)
T ss_pred             CeeEEEEeeccccc--CC--cCceEEEEeccHHHHHHHHH---------------HhhhhhhhhheeeeEEeCch
Confidence            88888888666553  22  34568999999999999999               99999999999999999988

>KOG0123|consensus

Probab=94.46  E-value=0.13  Score=42.71  Aligned_cols=58  Identities=19%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      ..+.+=.+.+|+|++|.|+++. +      .++--||.|.++.+|++|++               .||.--+.|+.|+-.
T Consensus        13 ~~l~~~f~~~~~v~s~rvc~d~-t------slgy~yvnf~~~~da~~A~~---------------~~n~~~~~~~~~rim   70 (369)
T KOG0123|consen   13 AMLFDKFSPAGPVLSIRVCRDA-T------SLGYAYVNFQQPADAERALD---------------TMNFDVLKGKPIRIM   70 (369)
T ss_pred             HHHHHHhcccCCceeEEEeecC-C------ccceEEEecCCHHHHHHHHH---------------HcCCcccCCcEEEee
Confidence            3444457899999999999976 3      46788999999999999999               888888888888854

>KOG0121|consensus

Probab=94.46  E-value=0.15  Score=38.63  Aligned_cols=63  Identities=14%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -++-|-+=.++.|.|.+|+.=.+.....+    -+-.||+|...++|..|++               -+||-..+.|.|+
T Consensus        49 tEEqiyELFs~cG~irriiMGLdr~kktp----CGFCFVeyy~~~dA~~Alr---------------yisgtrLddr~ir  109 (153)
T KOG0121|consen   49 TEEQIYELFSKCGDIRRIIMGLDRFKKTP----CGFCFVEYYSRDDAEDALR---------------YISGTRLDDRPIR  109 (153)
T ss_pred             cHHHHHHHHHhccchheeEeccccCCcCc----cceEEEEEecchhHHHHHH---------------HhccCccccccee
Confidence            35666666899999999887555443332    3679999999999999999               7888888888887


Q ss_pred             EE
Q psy2134          89 AE   90 (104)
Q Consensus        89 a~   90 (104)
                      +.
T Consensus       110 ~D  111 (153)
T KOG0121|consen  110 ID  111 (153)
T ss_pred             ee
Confidence            65

>KOG0145|consensus

Probab=94.30  E-value=0.17  Score=42.33  Aligned_cols=57  Identities=21%  Similarity=0.300  Sum_probs=48.5

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      .+-||.|.+|+|.++....    .-.+--||...+-++|..|+.               .|||-..++|.++..|=
T Consensus       299 FgpFGAv~nVKvirD~ttn----kCKGfgFVtMtNYdEAamAi~---------------sLNGy~lg~rvLQVsFK  355 (360)
T KOG0145|consen  299 FGPFGAVTNVKVIRDFTTN----KCKGFGFVTMTNYDEAAMAIA---------------SLNGYRLGDRVLQVSFK  355 (360)
T ss_pred             hCcccceeeEEEEecCCcc----cccceeEEEecchHHHHHHHH---------------HhcCccccceEEEEEEe
Confidence            5679999999999876532    234567999999999999999               99999999999999874

>KOG4209|consensus

Probab=93.71  E-value=0.13  Score=40.53  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             CCceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134           1 YGQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR   80 (104)
Q Consensus         1 ~g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR   80 (104)
                      ||.|+....-++++.+.+.+|+|.+|.|+.++...    ...+..||+|.+....+.|+.                |||=
T Consensus       106 v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~----~~k~~~yvef~~~~~~~~ay~----------------l~gs  165 (231)
T KOG4209|consen  106 VGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRG----HPKGFAYVEFSSYELVEEAYK----------------LDGS  165 (231)
T ss_pred             EeccccccccchhhheeeccCCccceeeeccccCC----CcceeEEEecccHhhhHHHhh----------------cCCc
Confidence            46777777777899999999999999998876542    235679999999999999998                6677


Q ss_pred             eeCCeEEEEEEe
Q psy2134          81 FFAGRMVRAELY   92 (104)
Q Consensus        81 ~F~GR~V~a~~y   92 (104)
                      .+.|+.+....+
T Consensus       166 ~i~~~~i~vt~~  177 (231)
T KOG4209|consen  166 EIPGPAIEVTLK  177 (231)
T ss_pred             ccccccceeeee
Confidence            777777776654

>KOG0117|consensus

Probab=92.30  E-value=0.65  Score=40.86  Aligned_cols=57  Identities=23%  Similarity=0.221  Sum_probs=45.4

Q ss_pred             eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134           4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG   64 (104)
Q Consensus         4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~   64 (104)
                      +=|-..++|+.-=|+|-|+|-.+.+-.++-+.    +.-+-.||.|.+-++|+.|++.||.
T Consensus        91 IPrD~~EdeLvplfEkiG~I~elRLMmD~~sG----~nRGYAFVtf~~Ke~Aq~Aik~lnn  147 (506)
T KOG0117|consen   91 IPRDVFEDELVPLFEKIGKIYELRLMMDPFSG----DNRGYAFVTFCTKEEAQEAIKELNN  147 (506)
T ss_pred             CCccccchhhHHHHHhccceeeEEEeecccCC----CCcceEEEEeecHHHHHHHHHHhhC
Confidence            34556678888889999999999998775432    3567899999999999999994443

>KOG0132|consensus

Probab=92.18  E-value=0.47  Score=44.13  Aligned_cols=64  Identities=19%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             CceehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce
Q psy2134           2 GQVEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF   81 (104)
Q Consensus         2 g~verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~   81 (104)
                      |.|.+..-++|+.+=.+.||.|++|.+-.+.          +..||+.-.-++|.+|++               +|+.=.
T Consensus       427 G~i~k~v~e~dL~~~feefGeiqSi~li~~R----------~cAfI~M~~RqdA~kalq---------------kl~n~k  481 (894)
T KOG0132|consen  427 GGIPKNVTEQDLANLFEEFGEIQSIILIPPR----------GCAFIKMVRRQDAEKALQ---------------KLSNVK  481 (894)
T ss_pred             ccccchhhHHHHHHHHHhcccceeEeeccCC----------ceeEEEEeehhHHHHHHH---------------HHhccc
Confidence            6788888999999999999999998775532          358999999999999999               888888


Q ss_pred             eCCeEEEEE
Q psy2134          82 FAGRMVRAE   90 (104)
Q Consensus        82 F~GR~V~a~   90 (104)
                      +++++|+..
T Consensus       482 v~~k~Iki~  490 (894)
T KOG0132|consen  482 VADKTIKIA  490 (894)
T ss_pred             ccceeeEEe
Confidence            888888643

>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function

Probab=91.56  E-value=1.5  Score=33.03  Aligned_cols=60  Identities=25%  Similarity=0.329  Sum_probs=44.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .|..++-+....||.|+=|.+..+            +.+|.|.+-++|.+|+.                |+|-.+.|+.+
T Consensus        48 ~l~~~ll~~~~~~GevvLvRfv~~------------~mwVTF~dg~sALaals----------------~dg~~v~g~~l   99 (146)
T PF08952_consen   48 NLMDELLQKFAQYGEVVLVRFVGD------------TMWVTFRDGQSALAALS----------------LDGIQVNGRTL   99 (146)
T ss_dssp             HHHHHHHHHHHCCS-ECEEEEETT------------CEEEEESSCHHHHHHHH----------------GCCSEETTEEE
T ss_pred             HHHHHHHHHHHhCCceEEEEEeCC------------eEEEEECccHHHHHHHc----------------cCCcEECCEEE
Confidence            355677778889999876544431            48999999999999987                89999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      +..+=+++
T Consensus       100 ~i~LKtpd  107 (146)
T PF08952_consen  100 KIRLKTPD  107 (146)
T ss_dssp             EEEE----
T ss_pred             EEEeCCcc
Confidence            98876543

; PDB: 1UFW_A 2DNR_A.

>KOG0149|consensus

Probab=91.46  E-value=0.45  Score=38.59  Aligned_cols=47  Identities=21%  Similarity=0.253  Sum_probs=37.3

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .++++.=.+.||.|+..+|.-++...  -+  .|-=||.|.+.++|.+|+.
T Consensus        26 ~~~l~~yFeqfGeI~eavvitd~~t~--rs--kGyGfVTf~d~~aa~rAc~   72 (247)
T KOG0149|consen   26 KETLRRYFEQFGEIVEAVVITDKNTG--RS--KGYGFVTFRDAEAATRACK   72 (247)
T ss_pred             hHHHHHHHHHhCceEEEEEEeccCCc--cc--cceeeEEeecHHHHHHHhc
Confidence            46777778999999998887776542  23  3456999999999999998

>KOG1190|consensus

Probab=91.32  E-value=0.54  Score=41.17  Aligned_cols=53  Identities=28%  Similarity=0.448  Sum_probs=44.9

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEec
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYD   93 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd   93 (104)
                      .+-||.|.+|+|...+..         ..-|++++.+.|.-|..               .|+|-..=|+.++..+-.
T Consensus       319 FgvYGdVqRVkil~nkkd---------~ALIQmsd~~qAqLA~~---------------hL~g~~l~gk~lrvt~SK  371 (492)
T KOG1190|consen  319 FGVYGDVQRVKILYNKKD---------NALIQMSDGQQAQLAME---------------HLEGHKLYGKKLRVTLSK  371 (492)
T ss_pred             HhhhcceEEEEeeecCCc---------ceeeeecchhHHHHHHH---------------HhhcceecCceEEEeecc
Confidence            467999999999887662         36789999999999999               888988888999988753

>KOG0127|consensus

Probab=91.26  E-value=0.86  Score=41.22  Aligned_cols=48  Identities=19%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      -++|+.+..++||.|.-+.|...+.+.    ...|..||.|.+..+|..|+.
T Consensus       305 tEEel~~~fskFG~v~ya~iV~~k~T~----~skGtAFv~Fkt~~~~~~ci~  352 (678)
T KOG0127|consen  305 TEEELKEHFSKFGEVKYAIIVKDKDTG----HSKGTAFVKFKTQIAAQNCIE  352 (678)
T ss_pred             cHHHHHHHHHhhccceeEEEEeccCCC----CcccceEEEeccHHHHHHHHH
Confidence            367899999999999987776655432    235679999999999999999

>KOG0126|consensus

Probab=91.07  E-value=0.13  Score=40.85  Aligned_cols=55  Identities=22%  Similarity=0.390  Sum_probs=47.8

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      .+.||.|+.|.+.+++...    ...|-.|+.|++..+..-|++               .|||=.+.||+|+..
T Consensus        56 FSqyGe~vdinLiRDk~TG----KSKGFaFLcYEDQRSTILAVD---------------N~NGiki~gRtirVD  110 (219)
T KOG0126|consen   56 FSQYGEIVDINLIRDKKTG----KSKGFAFLCYEDQRSTILAVD---------------NLNGIKILGRTIRVD  110 (219)
T ss_pred             eeccCceEEEEEEecCCCC----cccceEEEEecCccceEEEEe---------------ccCCceecceeEEee
Confidence            4789999999999887642    345679999999999999999               999999999999864

>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation

Probab=91.05  E-value=0.64  Score=32.25  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=26.5

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhh
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDAL   62 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~   62 (104)
                      .+++++.++.||.|.=|.+-.          |-..-||+|.+++.|+.|+.++
T Consensus        15 re~iK~~f~~~g~V~yVD~~~----------G~~~g~VRf~~~~~A~~a~~~~   57 (105)
T PF08777_consen   15 REDIKEAFSQFGEVAYVDFSR----------GDTEGYVRFKTPEAAQKALEKL   57 (105)
T ss_dssp             HHHHHHHT-SS--EEEEE--T----------T-SEEEEEESS---HHHHHHHH
T ss_pred             HHHHHHHHHhcCCcceEEecC----------CCCEEEEEECCcchHHHHHHHH
Confidence            789999999999886543322          2224799999999999999943

It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.

>PF15023 DUF4523: Protein of unknown function (DUF4523)

Probab=90.44  E-value=0.98  Score=34.75  Aligned_cols=53  Identities=19%  Similarity=0.313  Sum_probs=41.1

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      ..|-..-++||+|.+|..+-..           ..-|.|.++.+|.+|+.               ++.-| -.|.+++|.
T Consensus       105 ~sV~~~Ls~fGpI~SVT~cGrq-----------savVvF~d~~SAC~Av~---------------Af~s~-~pgtm~qCs  157 (166)
T PF15023_consen  105 KSVIQRLSVFGPIQSVTLCGRQ-----------SAVVVFKDITSACKAVS---------------AFQSR-APGTMFQCS  157 (166)
T ss_pred             HHHHHHHHhcCCcceeeecCCc-----------eEEEEehhhHHHHHHHH---------------hhcCC-CCCceEEee
Confidence            4556678899999998876432           25689999999999999               77664 477888876

>KOG0131|consensus

Probab=90.24  E-value=0.55  Score=37.16  Aligned_cols=55  Identities=24%  Similarity=0.244  Sum_probs=40.4

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      |-.-|+|+++.||.+.-..    .-.+--|++|.+.++|.+|++               .||+=..=||.|+..
T Consensus        30 ~iqagpVv~i~iPkDrv~~----~~qGygF~Ef~~eedadYAik---------------iln~VkLYgrpIrv~   84 (203)
T KOG0131|consen   30 FIQAGPVVNLHIPKDRVTQ----KHQGYGFAEFRTEEDADYAIK---------------ILNMVKLYGRPIRVN   84 (203)
T ss_pred             HHhcCceeeeecchhhhcc----cccceeEEEEechhhhHHHHH---------------HHHHHHhcCceeEEE
Confidence            5689999998888765432    234678999999999999999               555555555555543

>KOG0130|consensus

Probab=89.69  E-value=0.81  Score=35.13  Aligned_cols=63  Identities=22%  Similarity=0.361  Sum_probs=44.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++||+.-...||.|.++.+--+..+    -=..+-.-|+|.+.++|..|+.               +|||--.-|..|.+
T Consensus        86 Eedi~d~F~dyGeiKNihLNLDRRt----Gy~KGYaLvEYet~keAq~A~~---------------~~Ng~~ll~q~v~V  146 (170)
T KOG0130|consen   86 EEDIHDKFADYGEIKNIHLNLDRRT----GYVKGYALVEYETLKEAQAAID---------------ALNGAELLGQNVSV  146 (170)
T ss_pred             HHHHHHHHhhcccccceeecccccc----ccccceeeeehHhHHHHHHHHH---------------hccchhhhCCceeE
Confidence            4556666678999999665433322    1134567799999999999999               77877777777766


Q ss_pred             EE
Q psy2134          90 EL   91 (104)
Q Consensus        90 ~~   91 (104)
                      .+
T Consensus       147 Dw  148 (170)
T KOG0130|consen  147 DW  148 (170)
T ss_pred             EE
Confidence            54

>KOG0146|consensus

Probab=89.38  E-value=0.81  Score=38.53  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=39.7

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      -.=++|++.=..-||.+..+.+-+....     ...|..||+|++-.+|..|++
T Consensus        30 qq~e~dvrrlf~pfG~~~e~tvlrg~dg-----~sKGCAFVKf~s~~eAqaAI~   78 (371)
T KOG0146|consen   30 QQSEDDVRRLFQPFGNIEECTVLRGPDG-----NSKGCAFVKFSSHAEAQAAIN   78 (371)
T ss_pred             cccHHHHHHHhcccCCcceeEEecCCCC-----CCCCceEEEeccchHHHHHHH
Confidence            3446788877789999999999875432     345689999999999999999

>KOG4661|consensus

Probab=89.28  E-value=0.87  Score=41.80  Aligned_cols=62  Identities=23%  Similarity=0.250  Sum_probs=47.3

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      -|++.=.+|||+|+--+|.....+++    .-.-=||.+++..+|.+|+.               .|+---.-||||.++
T Consensus       420 tDLKnlFSKyGKVvGAKVVTNaRsPG----aRCYGfVTMSts~eAtkCI~---------------hLHrTELHGrmISVE  480 (940)
T KOG4661|consen  420 TDLKNLFSKYGKVVGAKVVTNARSPG----ARCYGFVTMSTSAEATKCIE---------------HLHRTELHGRMISVE  480 (940)
T ss_pred             hHHHHHHHHhcceeceeeeecCCCCC----cceeEEEEecchHHHHHHHH---------------Hhhhhhhcceeeeee
Confidence            35666689999999877766554433    22345899999999999999               888777888888776


Q ss_pred             E
Q psy2134          91 L   91 (104)
Q Consensus        91 ~   91 (104)
                      -
T Consensus       481 k  481 (940)
T KOG4661|consen  481 K  481 (940)
T ss_pred             e
Confidence            4

>KOG4285|consensus

Probab=89.18  E-value=1.1  Score=37.86  Aligned_cols=51  Identities=20%  Similarity=0.187  Sum_probs=39.2

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      |-.+.++||.|++++-....+          -++|+|+..-+|.+|+.                -||+.|+|.++..
T Consensus       213 vL~~F~~cG~Vvkhv~~~ngN----------wMhirYssr~~A~KALs----------------kng~ii~g~vmiG  263 (350)
T KOG4285|consen  213 VLNLFSRCGEVVKHVTPSNGN----------WMHIRYSSRTHAQKALS----------------KNGTIIDGDVMIG  263 (350)
T ss_pred             HHHHHHhhCeeeeeecCCCCc----------eEEEEecchhHHHHhhh----------------hcCeeeccceEEe
Confidence            456789999999965553222          48999999999999998                4688888876653

>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells

Probab=89.11  E-value=2.4  Score=32.44  Aligned_cols=63  Identities=21%  Similarity=0.194  Sum_probs=43.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR   85 (104)
                      ++.+.+++=..+|+.+....+....          .+|-|.|.+.+.|..|+.               .|+  |-.|.|.
T Consensus         7 ~~~~~l~~l~~~~~~~~~~~~L~sF----------rRi~v~f~~~~~A~~~r~---------------~l~~~~~~~~g~   61 (184)
T PF04847_consen    7 DNLAELEELFSTYDPPVQFSPLKSF----------RRIRVVFESPESAQRARQ---------------LLHWDGTSFNGK   61 (184)
T ss_dssp             --HHHHHHHHHTT-SS-EEEEETTT----------TEEEEE-SSTTHHHHHHH---------------TST--TSEETTE
T ss_pred             hhHHHHHHHHHhcCCceEEEEcCCC----------CEEEEEeCCHHHHHHHHH---------------HhcccccccCCC
Confidence            3455666667789999887666544          389999999999999999               888  9999999


Q ss_pred             EEEEEEeccc
Q psy2134          86 MVRAELYDQS   95 (104)
Q Consensus        86 ~V~a~~yd~~   95 (104)
                      .++..|-...
T Consensus        62 ~l~~yf~~~~   71 (184)
T PF04847_consen   62 RLRVYFGQPT   71 (184)
T ss_dssp             E-EEE----S
T ss_pred             ceEEEEcccc
Confidence            9888776443

Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.

>KOG0533|consensus

Probab=88.26  E-value=1.6  Score=35.05  Aligned_cols=62  Identities=27%  Similarity=0.340  Sum_probs=47.6

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      .++..|+++=.+.||.+.+|-|+....+.   +.|.  .=|.|..-++|..|+..+||  +        .|+||...
T Consensus        94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~---s~Gt--a~v~~~r~~DA~~avk~~~g--v--------~ldG~~mk  155 (243)
T KOG0533|consen   94 GVIDADLKELFAEFGELKRVAVHYDRAGR---SLGT--ADVSFNRRDDAERAVKKYNG--V--------ALDGRPMK  155 (243)
T ss_pred             CcchHHHHHHHHHhccceEEeeccCCCCC---CCcc--ceeeecchHhHHHHHHHhcC--c--------ccCCceee
Confidence            46788999999999999999997765432   3344  44689999999999997777  5        67777633

>KOG0111|consensus

Probab=88.05  E-value=0.72  Score=37.90  Aligned_cols=62  Identities=23%  Similarity=0.313  Sum_probs=49.5

Q ss_pred             hCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEecccccc
Q psy2134          19 AYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELYDQSLFD   98 (104)
Q Consensus        19 kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~yd~~~f~   98 (104)
                      -||.|..|.||-+-.+    ..--+--||+|...++|..|++               .||+--.-||+|++.|--+..-.
T Consensus        33 PFGDI~dIqiPlDyes----qkHRgFgFVefe~aEDAaaAiD---------------NMnesEL~GrtirVN~AkP~kik   93 (298)
T KOG0111|consen   33 PFGDIKDIQIPLDYES----QKHRGFGFVEFEEAEDAAAAID---------------NMNESELFGRTIRVNLAKPEKIK   93 (298)
T ss_pred             cccchhhcccccchhc----ccccceeEEEeeccchhHHHhh---------------cCchhhhcceeEEEeecCCcccc
Confidence            5999999888765332    2234567999999999999999               99999999999999987665544


Q ss_pred             c
Q psy2134          99 H   99 (104)
Q Consensus        99 ~   99 (104)
                      .
T Consensus        94 e   94 (298)
T KOG0111|consen   94 E   94 (298)
T ss_pred             C
Confidence            3

>KOG0106|consensus

Probab=86.96  E-value=0.63  Score=36.83  Aligned_cols=54  Identities=22%  Similarity=0.297  Sum_probs=40.5

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      +.++..=..+||++..+.+-+            +-+||.|.+..+|..|+.               .|||+-|.|..+..
T Consensus        15 ~~d~E~~f~~yg~~~d~~mk~------------gf~fv~fed~rda~Dav~---------------~l~~~~l~~e~~vv   67 (216)
T KOG0106|consen   15 ERDVERFFKGYGKIPDADMKN------------GFGFVEFEDPRDADDAVH---------------DLDGKELCGERLVV   67 (216)
T ss_pred             hhHHHHHHhhccccccceeec------------ccceeccCchhhhhcccc---------------hhcCceecceeeee
Confidence            345544456899998754432            235999999999999999               88899888888554


Q ss_pred             E
Q psy2134          90 E   90 (104)
Q Consensus        90 ~   90 (104)
                      +
T Consensus        68 e   68 (216)
T KOG0106|consen   68 E   68 (216)
T ss_pred             e
Confidence            4

>KOG4212|consensus

Probab=86.77  E-value=1.3  Score=39.48  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=41.5

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      ++.-...||.|.-..|-.+..     +.+    -|+|.++++|++|+.               .|||-...||.|++.|+
T Consensus       553 lrDKfre~G~v~yadime~Gk-----skG----VVrF~s~edAEra~a---------------~Mngs~l~Gr~I~V~y~  608 (608)
T KOG4212|consen  553 LRDKFREIGHVLYADIMENGK-----SKG----VVRFFSPEDAERACA---------------LMNGSRLDGRNIKVTYF  608 (608)
T ss_pred             HHHHHHhccceehhhhhccCC-----ccc----eEEecCHHHHHHHHH---------------HhccCcccCceeeeeeC
Confidence            344456678887666632222     223    479999999999999               99999999999998864

>KOG0415|consensus

Probab=84.48  E-value=2.1  Score=37.25  Aligned_cols=63  Identities=10%  Similarity=0.262  Sum_probs=52.1

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      +|+.-=.+.||+|.++.|.+...+.    +..--.||+|.+.+++++|.-               .|..=.++.|.|.+.
T Consensus       254 eDLeiIFSrFG~i~sceVIRD~ktg----dsLqyaFiEFen~escE~AyF---------------KMdNvLIDDrRIHVD  314 (479)
T KOG0415|consen  254 EDLEIIFSRFGKIVSCEVIRDRKTG----DSLQYAFIEFENKESCEQAYF---------------KMDNVLIDDRRIHVD  314 (479)
T ss_pred             cchhhHHhhcccceeeeEEeccccc----chhheeeeeecchhhHHHHHh---------------hhcceeeccceEEee
Confidence            4444457899999999998877643    245578999999999999988               999999999999988


Q ss_pred             Ee
Q psy2134          91 LY   92 (104)
Q Consensus        91 ~y   92 (104)
                      |-
T Consensus       315 FS  316 (479)
T KOG0415|consen  315 FS  316 (479)
T ss_pred             hh
Confidence            63

>KOG0147|consensus

Probab=83.34  E-value=3.6  Score=36.80  Aligned_cols=61  Identities=25%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      ++.=.+-||.|+.|.++.....  ..+  .+-=||+|.+.+.|.+|+.               .|||=-.+||.|++...
T Consensus       295 lr~ifepfg~Ie~v~l~~d~~t--G~s--kgfGfi~f~~~~~ar~a~e---------------~lngfelAGr~ikV~~v  355 (549)
T KOG0147|consen  295 LRGIFEPFGKIENVQLTKDSET--GRS--KGFGFITFVNKEDARKALE---------------QLNGFELAGRLIKVSVV  355 (549)
T ss_pred             HhhhccCcccceeeeecccccc--ccc--cCcceEEEecHHHHHHHHH---------------HhccceecCceEEEEEe
Confidence            3334567999999877765421  122  3345899999999999999               55554456666665544

>KOG0146|consensus

Probab=82.10  E-value=1.9  Score=36.34  Aligned_cols=40  Identities=18%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             hhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134          17 DEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus        17 c~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .--||.|++-+||++.-..    ....-=||+|+++.+|..|+.
T Consensus       306 F~PFGhivSaKVFvDRATN----QSKCFGFVSfDNp~SaQaAIq  345 (371)
T KOG0146|consen  306 FLPFGHIVSAKVFVDRATN----QSKCFGFVSFDNPASAQAAIQ  345 (371)
T ss_pred             hccccceeeeeeeehhccc----cccceeeEecCCchhHHHHHH
Confidence            4469999999998865421    122345899999999999999

>KOG0110|consensus

Probab=81.80  E-value=1.8  Score=39.81  Aligned_cols=62  Identities=27%  Similarity=0.231  Sum_probs=46.8

Q ss_pred             hHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEE
Q psy2134          11 NEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAE   90 (104)
Q Consensus        11 ~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~   90 (104)
                      .||+.=...||+|..|.||.....    ...-|.-||.|-++++|..|.+               +|.+--+=||.+.-+
T Consensus       628 rEVr~LF~aFGqlksvRlPKK~~k----~a~rGF~Fv~f~t~~ea~nA~~---------------al~STHlyGRrLVLE  688 (725)
T KOG0110|consen  628 REVRKLFTAFGQLKSVRLPKKIGK----GAHRGFGFVDFLTPREAKNAFD---------------ALGSTHLYGRRLVLE  688 (725)
T ss_pred             HHHHHHHhcccceeeeccchhhcc----hhhccceeeeccCcHHHHHHHH---------------hhcccceechhhhee
Confidence            466666789999999999986331    2345678999999999999999               666666666665555


Q ss_pred             E
Q psy2134          91 L   91 (104)
Q Consensus        91 ~   91 (104)
                      +
T Consensus       689 w  689 (725)
T KOG0110|consen  689 W  689 (725)
T ss_pred             h
Confidence            3

>KOG1190|consensus

Probab=81.05  E-value=1.3  Score=38.76  Aligned_cols=38  Identities=16%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134          15 SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus        15 ~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .=.++||.|.|+.-|....+  .      ..-|+|.++..|..|..
T Consensus       169 qvFS~fG~VlKIiTF~Knn~--F------QALvQy~d~~sAq~AK~  206 (492)
T KOG1190|consen  169 QVFSKFGFVLKIITFTKNNG--F------QALVQYTDAVSAQAAKL  206 (492)
T ss_pred             HHHhhcceeEEEEEEecccc--h------hhhhhccchhhHHHHHH
Confidence            34789999999888865442  2      35689999999999999

>KOG0153|consensus

Probab=80.95  E-value=7.4  Score=33.41  Aligned_cols=67  Identities=19%  Similarity=0.352  Sum_probs=51.6

Q ss_pred             eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      +...++++||+.-.-+||.|..+.|.....          -.||.|.+-.+|+.|..              ..+|-=.+.
T Consensus       236 l~d~v~e~dIrdhFyqyGeirsi~~~~~~~----------CAFv~ftTR~aAE~Aae--------------~~~n~lvI~  291 (377)
T KOG0153|consen  236 LNDEVLEQDIRDHFYQYGEIRSIRILPRKG----------CAFVTFTTREAAEKAAE--------------KSFNKLVIN  291 (377)
T ss_pred             cccchhHHHHHHHHhhcCCeeeEEeecccc----------cceeeehhhHHHHHHHH--------------hhcceeeec
Confidence            344678899999999999999998876432          58999999999999988              145544567


Q ss_pred             CeEEEEEEeccc
Q psy2134          84 GRMVRAELYDQS   95 (104)
Q Consensus        84 GR~V~a~~yd~~   95 (104)
                      |+.|... |...
T Consensus       292 G~Rl~i~-Wg~~  302 (377)
T KOG0153|consen  292 GFRLKIK-WGRP  302 (377)
T ss_pred             ceEEEEE-eCCC
Confidence            8777766 5444

>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes

Probab=80.41  E-value=3.4  Score=26.99  Aligned_cols=16  Identities=25%  Similarity=0.449  Sum_probs=15.8

Q ss_pred             EEEEeCCHHHHHHHHH
Q psy2134          45 IFVSFSKMQEAEYARD   60 (104)
Q Consensus        45 ifV~F~~~~~A~~A~~   60 (104)
                      .||-|.+..+|++|..
T Consensus        36 fYIvF~~~~Ea~rC~~   51 (66)
T PF11767_consen   36 FYIVFNDSKEAERCFR   51 (66)
T ss_pred             EEEEECChHHHHHHHH
Confidence            8999999999999999

This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
3dxb_A	222	Structure Of The Uhm Domain Of Puf60 Fused To Thior		1e-13
2dny_A	119	Solution Structure Of The Third Rna Binding Domain		1e-13
3ue2_A	118	Crystal Structure Of A Rna Binding Domain Of Poly-U		1e-13
2pe8_A	105	Crystal Structure Of The Uhm Domain Of Human Spf45		7e-04

>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin Length = 222

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 15/84 (17%)
Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 197
Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
           R+FAGR V AE+YDQ  FD++D S
Sbjct: 198 RWFAGRKVVAEVYDQERFDNSDLS 221

>pdb|2DNY|A Chain A, Solution Structure Of The Third Rna Binding Domain Of Fbp- Interacting Repressor, Siahbp1 Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 15/84 (17%)
Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 44  FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 88
Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
           R+FAGR V AE+YDQ  FD++D S
Sbjct: 89  RWFAGRKVVAEVYDQERFDNSDLS 112

>pdb|3UE2|A Chain A, Crystal Structure Of A Rna Binding Domain Of Poly-U Binding Splicing Factor 60kda (Puf60) From Homo Sapiens At 1.23 A Resolution Length = 118

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 51/84 (60%), Gaps = 15/84 (17%)
Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 49  FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFS---------------IASETHKAIQALNG 93
Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
           R+FAGR V AE+YDQ  FD++D S
Sbjct: 94  RWFAGRKVVAEVYDQERFDNSDLS 117

>pdb|2PE8|A Chain A, Crystal Structure Of The Uhm Domain Of Human Spf45 (free Form) Length = 105

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 20/93 (21%)
Query: 12  EKQSDDEAYGQVEKVVIYN-EKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEA 70
           E + + E YG+V K VI+      DDEA    V+IF+ F +++ A  A            
Sbjct: 29  ETKEECEKYGKVGKCVIFEIPGAPDDEA----VRIFLEFERVESAIKA------------ 72
Query: 71  EYARDALNGRFFAGRMVRAELYDQSLFDHNDFS 103
               D LNGR+F GR+V+A  Y+   F   D +
Sbjct: 73  --VVD-LNGRYFGGRVVKACFYNLDKFRVLDLA 102

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	4e-28
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	2e-17
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	9e-13
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	2e-10
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	2e-10
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	8e-10
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	3e-09
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	8e-04

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, alternative splicing, FBP interacting repressor, RRM, electron transport; 2.20A {Escherichia coli O157} Length = 222

 Score =  100 bits (251), Expect = 4e-28
 Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS                 +E   A  ALNG
Sbjct: 153 FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIA---------------SETHKAIQALNG 197

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AE+YDQ  FD++D S 
Sbjct: 198 RWFAGRKVVAEVYDQERFDNSDLSA 222

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} PDB: 3us5_A 2dny_A Length = 118

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 39/85 (45%), Positives = 50/85 (58%), Gaps = 15/85 (17%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +G V +V+IY EKQ ++E +E+IVKIFV FS   E   A  ALN               G
Sbjct: 49  FGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALN---------------G 93

Query: 80  RFFAGRMVRAELYDQSLFDHNDFSG 104
           R+FAGR V AE+YDQ  FD++D S 
Sbjct: 94  RWFAGRKVVAEVYDQERFDNSDLSA 118

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A Length = 105

 Score = 58.3 bits (141), Expect = 9e-13
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 17/94 (18%)

Query: 9   IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFA 68
           I  + + +   YG V+ + I   +  D        KIFV F+ +                
Sbjct: 28  IVEDVRDECSKYGLVKSIEIP--RPVDGVEVPGCGKIFVEFTSV---------------F 70

Query: 69  EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDF 102
           + + A   L GR FA R+V  +  D   +   DF
Sbjct: 71  DCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 104

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Length = 112

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 24/86 (27%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           +GQ+ K+++++                VSF   +EA+Y    L+GR+F            
Sbjct: 50  FGQIRKLLLFDR--------HPDGVASVSFRDPEEADYCIQTLDGRWF------------ 89

Query: 80  RFFAGRMVRAELYDQSL-FDHNDFSG 104
               GR + A+ +D +  +     SG
Sbjct: 90  ---GGRQITAQAWDGTTDYQSGPSSG 112

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A Length = 114

 Score = 52.0 bits (125), Expect = 2e-10
 Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 23/79 (29%)

Query: 20 YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
          +G V  + +                ++V    +  A  A +AL+GR+F            
Sbjct: 41 HGGVIHIYVDKNSAQ--------GNVYVKCPSIAAAIAAVNALHGRWF------------ 80

Query: 80 RFFAGRMVRAELYDQSLFD 98
             AG+M+ A       + 
Sbjct: 81 ---AGKMITAAYVPLPTYH 96

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A Length = 105

 Score = 50.6 bits (121), Expect = 8e-10
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 18/84 (21%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           YG+V K VI+    + D+     V+IF+ F +++ A  A   LNGR+F            
Sbjct: 37  YGKVGKCVIFEIPGAPDD---EAVRIFLEFERVESAIKAVVDLNGRYFG----------- 82

Query: 80  RFFAGRMVRAELYDQSLFDHNDFS 103
               GR+V+A  Y+   F   D +
Sbjct: 83  ----GRVVKACFYNLDKFRVLDLA 102

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3 Length = 104

 Score = 49.5 bits (118), Expect = 3e-09
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 20/73 (27%)

Query: 20  YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG 79
           YG+VE++ +      D+    ++  ++V F + ++AE A   LN R+F            
Sbjct: 51  YGEVEEMNVC-----DNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF------------ 93

Query: 80  RFFAGRMVRAELY 92
               G+ + AEL 
Sbjct: 94  ---NGQPIHAELS 103

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A Length = 282

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 18 EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF 67
            +GQ+  +++    +   +A       FV F ++  A  A  ++ G  F
Sbjct: 35 SQFGQILDILVSRSLKMRGQA-------FVIFKEVSSATNALRSMQGFPF 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	99.87
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	99.81
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	99.79
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	99.76
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	99.71
1jmt_A	104	Splicing factor U2AF 35 kDa subunit; RRM, RNA spli	99.55
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	99.45
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	98.92
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	98.9
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	98.87
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.85
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	98.85
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	98.85
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	98.83
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	98.8
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.8
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	98.8
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	98.79
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	98.79
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	98.77
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	98.77
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	98.76
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	98.76
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	98.76
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.75
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	98.75
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	98.75
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	98.75
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	98.75
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	98.74
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	98.74
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	98.73
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	98.73
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	98.73
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	98.72
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	98.71
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	98.7
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	98.7
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.7
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	98.69
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	98.69
1x5p_A	97	Negative elongation factor E; structure genomics,	98.69
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	98.68
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	98.68
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.67
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	98.67
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	98.67
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	98.66
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	98.66
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	98.65
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	98.65
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.65
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	98.65
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	98.65
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	98.65
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	98.65
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	98.64
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	98.64
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	98.64
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	98.64
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	98.63
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	98.63
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	98.63
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.62
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	98.62
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	98.62
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	98.61
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	98.61
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.61
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	98.61
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	98.61
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	98.61
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.6
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	98.59
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	98.59
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.59
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	98.58
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	98.58
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	98.58
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.57
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	98.57
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	98.56
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	98.56
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	98.56
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.56
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	98.56
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	98.55
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	98.55
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	98.55
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	98.55
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	98.54
2div_A	99	TRNA selenocysteine associated protein; structural	98.54
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	98.54
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	98.53
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	98.53
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	98.52
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	98.51
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	98.51
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	98.51
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	98.51
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	98.51
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	98.51
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	98.48
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.48
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.47
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	98.47
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	98.47
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	98.46
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	98.45
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	98.45
1x4e_A	85	RNA binding motif, single-stranded interacting pro	98.45
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.45
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	98.44
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	98.44
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.43
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	98.43
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	98.43
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	98.43
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	98.42
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	98.42
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	98.42
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	98.42
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	98.42
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	98.41
1x5o_A	114	RNA binding motif, single-stranded interacting pro	98.41
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	98.4
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	98.4
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	98.39
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.39
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	98.38
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	98.38
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	98.37
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	98.36
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	98.36
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	98.35
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	98.35
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	98.34
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	98.33
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.33
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	98.32
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	98.32
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	98.31
1wg1_A	88	KIAA1579 protein, homolog EXC-7; RBD, structural g	98.31
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	98.3
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	98.3
2dis_A	109	Unnamed protein product; structural genomics, RRM	98.29
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	98.28
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	98.28
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	98.27
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	98.25
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	98.23
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	98.22
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	98.22
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	98.22
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	98.22
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	98.22
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	98.21
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	98.21
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	98.2
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	98.2
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	98.2
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	98.19
2adc_A	229	Polypyrimidine tract-binding protein 1; RBD, RRM,	98.17
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	98.17
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	98.17
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	98.15
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	98.12
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	98.11
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	98.1
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	98.09
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.07
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	97.34
2fc8_A	102	NCL protein; structure genomics, RRM_1 domain, str	98.04
2dgw_A	91	Probable RNA-binding protein 19; RRM domain, struc	98.04
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	98.03
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	98.02
2d9o_A	100	DNAJ (HSP40) homolog, subfamily C, member 17; RRM	98.02
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	98.01
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	97.99
2hzc_A	87	Splicing factor U2AF 65 kDa subunit; RNA splicing,	97.99
2db1_A	118	Heterogeneous nuclear ribonucleoprotein F; RRM dom	97.99
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	97.98
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	97.97
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	97.95
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	97.92
2dnr_A	91	Synaptojanin-1; RRM domain, RBD, structural genomi	97.85
2dnn_A	109	RNA-binding protein 12; RRM domain, RBD, structura	97.85
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	97.84
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	97.81
2hgl_A	136	HNRPF protein, heterogeneous nuclear ribonucleopro	97.79
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	97.77
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	97.77
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	97.73
2dha_A	123	FLJ20171 protein; RRM domain, structural genomics,	97.69
1ufw_A	95	Synaptojanin 2; RNP domain, structural genomics, r	97.62
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	97.61
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	97.59
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	97.59
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	97.54
2hgn_A	139	Heterogeneous nuclear ribonucleoprotein F; RNA rec	97.52
2j8a_A	136	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.36
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	97.35
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	97.35
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	97.32
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	97.3
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	97.25
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	96.95
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	96.92
2l9w_A	117	U4/U6 snRNA-associated-splicing factor PRP24; RRM,	96.39
1wwh_A	119	Nucleoporin 35, nucleoporin; structural genomics,	96.04
1wey_A	104	Calcipressin 1; structural genomics, RRM domain, r	95.49
3p3d_A	132	Nucleoporin 53; structural genomics, PSI-2, protei	90.59
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	85.04

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=99.87  E-value=1.5e-22  Score=140.37  Aligned_cols=82  Identities=49%  Similarity=0.761  Sum_probs=73.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|++|+++||++||+|.+|.|+.+..+........|.+||+|++.++|.+|+.               +||||+|+||.|
T Consensus        37 dleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~---------------~LnGr~f~GR~i  101 (118)
T 3ue2_A           37 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ---------------ALNGRWFAGRKV  101 (118)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             HHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHH---------------HHCCCEECCcEE
Confidence            58899999999999999999998765322334567999999999999999999               999999999999


Q ss_pred             EEEEeccccccccCCCC
Q psy2134          88 RAELYDQSLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~~~f~~~~~~~  104 (104)
                      .+.||+++.|.+++|+|
T Consensus       102 ~v~~~~~~~f~~~~~~~  118 (118)
T 3ue2_A          102 VAEVYDQERFDNSDLSA  118 (118)
T ss_dssp             EEEEECHHHHHTTCCCC
T ss_pred             EEEEcChHhccccccCC
Confidence            99999999999999997

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=99.81  E-value=3e-20  Score=125.34  Aligned_cols=79  Identities=27%  Similarity=0.393  Sum_probs=69.9

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .+|++|+++||++||+|++|.|+.+..+  ..+...|.+||+|++.++|.+|++               +||||+|+||.
T Consensus        26 ~~~~~dl~~~f~k~G~V~~v~i~~~~~~--~~~~~~G~~fV~f~~~~~A~~Ai~---------------~lnG~~f~GR~   88 (105)
T 3v4m_A           26 EEIVEDVRDECSKYGLVKSIEIPRPVDG--VEVPGCGKIFVEFTSVFDCQKAMQ---------------GLTGRKFANRV   88 (105)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEECCCCBTT--BCCTTTTEEEEEESSHHHHHHHHH---------------HHTTCEETTEE
T ss_pred             HHHHHHHHHHHHccCCEEEEEEeccCCC--CCcCCcEEEEEEECCHHHHHHHHH---------------HhCCCEeCCCE
Confidence            4688999999999999999999876542  112356789999999999999999               99999999999


Q ss_pred             EEEEEeccccccccCC
Q psy2134          87 VRAELYDQSLFDHNDF  102 (104)
Q Consensus        87 V~a~~yd~~~f~~~~~  102 (104)
                      |.+.|+|++.|.+++|
T Consensus        89 i~v~~~~~~~f~~~~~  104 (105)
T 3v4m_A           89 VVTKYCDPDSYHRRDF  104 (105)
T ss_dssp             CEEEEECHHHHHTTCC
T ss_pred             EEEEEeCHHHHhhccC
Confidence            9999999999999987

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=99.79  E-value=8.6e-20  Score=132.74  Aligned_cols=82  Identities=49%  Similarity=0.761  Sum_probs=74.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      ++.+|+.+||++||.|.+|.|+.+.....+.....|.+||+|++.++|.+|+.               .||||+|+||+|
T Consensus       141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~---------------~l~gr~~~gr~i  205 (222)
T 3dxb_A          141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQ---------------ALNGRWFAGRKV  205 (222)
T ss_dssp             THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred             HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHH---------------HhcCceECCeEE
Confidence            57889999999999999999998766544455788999999999999999999               999999999999


Q ss_pred             EEEEeccccccccCCCC
Q psy2134          88 RAELYDQSLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~~~f~~~~~~~  104 (104)
                      .+.|||++.|.+++|++
T Consensus       206 ~~~~~~~~~f~~~~~~~  222 (222)
T 3dxb_A          206 VAEVYDQERFDNSDLSA  222 (222)
T ss_dssp             EEEECCHHHHHTTCCCC
T ss_pred             EEEEcCHHHhhhcccCC
Confidence            99999999999999986

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=99.76  E-value=2.5e-18  Score=116.14  Aligned_cols=79  Identities=33%  Similarity=0.548  Sum_probs=69.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      ++++|++++|++||.|.+|.|+.++...   ....|.+||+|++.++|.+|+.               .||||+|+||.|
T Consensus        25 d~~~dl~~~f~~~G~V~~v~i~~~~~~~---~~~~G~~FV~f~~~~~A~~Ai~---------------~lnG~~~~Gr~i   86 (105)
T 2pe8_A           25 DLEVETKEECEKYGKVGKCVIFEIPGAP---DDEAVRIFLEFERVESAIKAVV---------------DLNGRYFGGRVV   86 (105)
T ss_dssp             -CHHHHHHHGGGGSCEEEEEEEECSSCC---TTTSEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             HHHHHHHHHHHhcCCEEEEEEecCCCCC---CCCcEEEEEEECCHHHHHHHHH---------------HHCCCEECCcEE
Confidence            5789999999999999999998764321   1346899999999999999999               999999999999


Q ss_pred             EEEEeccccccccCCCC
Q psy2134          88 RAELYDQSLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~~~f~~~~~~~  104 (104)
                      .+.+++++.|..++|+.
T Consensus        87 ~v~~a~~~~f~~~~~~~  103 (105)
T 2pe8_A           87 KACFYNLDKFRVLDLAE  103 (105)
T ss_dssp             EEEECCHHHHHTTCCCC
T ss_pred             EEEEcCHHHhhhhhccc
Confidence            99999999999999974

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=99.71  E-value=7e-18  Score=116.43  Aligned_cols=71  Identities=21%  Similarity=0.346  Sum_probs=63.9

Q ss_pred             hheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           6 KVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         6 rv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .-+|++|+++||++||.|++|.|+.++        ..|.+||+|++.++|.+|++               .||||+|+||
T Consensus        27 ~~el~edl~~~f~kfG~V~~v~i~~~~--------~~G~~fV~f~~~e~A~~Ai~---------------~lnG~~f~GR   83 (114)
T 3s6e_A           27 DTEIKDDVIEECNKHGGVIHIYVDKNS--------AQGNVYVKCPSIAAAIAAVN---------------ALHGRWFAGK   83 (114)
T ss_dssp             HHHHHHHHHHHHTTTTCCSEEEECTTC--------TTCCEEEECSSHHHHHHHHH---------------HHTTCEETTE
T ss_pred             HHHHHHHHHHHHhccCCEEEEEEecCC--------CcEEEEEEECCHHHHHHHHH---------------HhCCCEECCE
Confidence            457999999999999999999997653        14679999999999999999               9999999999


Q ss_pred             EEEEEEeccccccc
Q psy2134          86 MVRAELYDQSLFDH   99 (104)
Q Consensus        86 ~V~a~~yd~~~f~~   99 (104)
                      .|.+.|++++.|..
T Consensus        84 ~i~v~~~~~~~y~~   97 (114)
T 3s6e_A           84 MITAAYVPLPTYHN   97 (114)
T ss_dssp             ECEEEEECHHHHHH
T ss_pred             EEEEEEEcHHHHHH
Confidence            99999999998865

>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3

Probab=99.55  E-value=1.6e-14  Score=96.84  Aligned_cols=66  Identities=29%  Similarity=0.517  Sum_probs=58.5

Q ss_pred             eehhHHHHHh-hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDD-EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec-~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      +|++|+++|| ++||+|.+|.|+....     ....|.+||+|++.++|.+|+.               .||||+|+||.
T Consensus        38 ~~~edl~~~f~~~~G~V~~v~i~~~~~-----~~~~G~~fV~f~~~~~A~~A~~---------------~lng~~~~Gr~   97 (104)
T 1jmt_A           38 EFFEEVFTEMEEKYGEVEEMNVCDNLG-----DHLVGNVYVKFRREEDAEKAVI---------------DLNNRWFNGQP   97 (104)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEECCSSS-----SSSEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEE
T ss_pred             HHHHHHHHHhhccCCceEEEEEEeCCC-----CCccEEEEEEECCHHHHHHHHH---------------HHCCCEECCEE
Confidence            5779999999 9999999999987543     1346899999999999999999               99999999999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |.+.|.|
T Consensus        98 i~v~~sp  104 (104)
T 1jmt_A           98 IHAELSP  104 (104)
T ss_dssp             CCEEECC
T ss_pred             EEEEEcC
Confidence            9999875

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=99.45  E-value=3.5e-13  Score=89.72  Aligned_cols=74  Identities=27%  Similarity=0.510  Sum_probs=64.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .+++|+++.|++||.|.+|.|+...        ..+..||+|.+.++|.+|+.               .|||+.|.||.|
T Consensus        38 ~~e~~l~~~f~~~G~v~~v~i~~~~--------~~G~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~l   94 (112)
T 2dit_A           38 EIREDLRVECSKFGQIRKLLLFDRH--------PDGVASVSFRDPEEADYCIQ---------------TLDGRWFGGRQI   94 (112)
T ss_dssp             HHHHHHHHHGGGTSCCSEEEEETTC--------TTCEEEEECSCHHHHHHHHH---------------HSTTCEETTEEC
T ss_pred             HHHHHHHHHHHccCCEeEEEEecCC--------CCEEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence            4678999999999999999885432        13568999999999999999               999999999999


Q ss_pred             EEEEecc-ccccccCCCC
Q psy2134          88 RAELYDQ-SLFDHNDFSG  104 (104)
Q Consensus        88 ~a~~yd~-~~f~~~~~~~  104 (104)
                      .+.+.++ ..|..++.+|
T Consensus        95 ~v~~a~~~~~~~~~~~sg  112 (112)
T 2dit_A           95 TAQAWDGTTDYQSGPSSG  112 (112)
T ss_dssp             EEEECCSCCCSSCCCCCC
T ss_pred             EEEEeCCCCCcccCCCCC
Confidence            9999866 7898888876

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=98.92  E-value=9.8e-09  Score=67.34  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=55.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|..++.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus        32 te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~l~   92 (99)
T 4fxv_A           32 TQDELRSLFSSIGEVESAKLIRDKVAG----HSLGYGFVNYVTAKDAERAIN---------------TLNGLRLQSKTIK   92 (99)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECSSSC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCEEEeEeeecCCCC----cccccEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            467889899999999999998765421    234568999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.+-.
T Consensus        93 V~~Ak   97 (99)
T 4fxv_A           93 VSYAR   97 (99)
T ss_dssp             EEECC
T ss_pred             EEEee
Confidence            98753

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=98.90  E-value=1.1e-08  Score=68.53  Aligned_cols=67  Identities=21%  Similarity=0.161  Sum_probs=56.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++++++-+++||.|.+|.|..++.+.    ...+-.||+|++.++|.+|+.               .|||..+.||.|
T Consensus        18 ~te~~L~~~F~~~G~i~~v~i~~d~~tg----~~rG~aFV~f~~~~~A~~Ai~---------------~lng~~~~gr~i   78 (110)
T 3s8s_A           18 VRETFLKDMCRKYGEVEEVEILLHPRTR----KHLGLARVLFTSTRGAKETVK---------------NLHLTSVMGNII   78 (110)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEECCCCC----ceeeEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            3467889999999999999998765421    235678999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-+
T Consensus        79 ~V~~a~   84 (110)
T 3s8s_A           79 HAQLDI   84 (110)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            998754

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.87  E-value=2e-08  Score=63.26  Aligned_cols=65  Identities=25%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.+|.|...+..    ....+..||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        28 t~~~l~~~f~~~G~v~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~   88 (95)
T 2cqc_A           28 TERDLREVFSKYGPIADVSIVYDQQS----RRSRGFAFVYFENVDDAKEAKE---------------RANGMELDGRRIR   88 (95)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECSSS----SSEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred             CHHHHHHHHHhcCCeeEEEEEEcCCC----CCcccEEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            46788999999999999999876442    1235679999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        89 v~~a   92 (95)
T 2cqc_A           89 VSGP   92 (95)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            8864

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=98.85  E-value=2.9e-08  Score=61.11  Aligned_cols=68  Identities=19%  Similarity=0.178  Sum_probs=56.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l   73 (83)
T 3md1_A           13 VDDETLRNAFKDFPSYLSGHVMWDMQTG----SSRGYGFVSFTSQDDAQNAMD---------------SMQGQDLNGRPL   73 (83)
T ss_dssp             CCHHHHHHHHTTSTTEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEEcCCCC----CccceEEEEECCHHHHHHHHH---------------HhcCCeeCCcEE
Confidence            3467899999999999999998764421    235678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-.+
T Consensus        74 ~v~~a~~   80 (83)
T 3md1_A           74 RINWAAK   80 (83)
T ss_dssp             EEEECCC
T ss_pred             EEEecCc
Confidence            9987643

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=98.85  E-value=2.6e-08  Score=61.80  Aligned_cols=67  Identities=18%  Similarity=0.297  Sum_probs=56.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+..    ....+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   78 (87)
T 3bs9_A           18 ITTAAIAAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQ---------------QMGGQWLGGRQI   78 (87)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEeEEEEEecCCC----CccceEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence            456889999999999999999876432    1235678999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      ...+-.
T Consensus        79 ~v~~a~   84 (87)
T 3bs9_A           79 RTNWAT   84 (87)
T ss_dssp             EEEEEC
T ss_pred             EEEecC
Confidence            988753

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=98.85  E-value=1.1e-08  Score=63.19  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=53.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|+.++...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        19 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   79 (85)
T 3mdf_A           19 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI   79 (85)
T ss_dssp             CCHHHHHHHHGGGSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHhccCCEEEEEEEECCCCC----ccccEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            3467899999999999999887654321    123568999999999999999               999999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+.+
T Consensus        80 ~v~~   83 (85)
T 3mdf_A           80 RVNL   83 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.83  E-value=2e-08  Score=63.27  Aligned_cols=65  Identities=25%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        28 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   88 (94)
T 2e5h_A           28 LTNNDLYRIFSKYGKVVKVTIMKDKDTR----KSKGVAFILFLDKDSAQNCTR---------------AINNKQLFGRVI   88 (94)
T ss_dssp             SCHHHHHHHTTTTSCEEEEEECCCSSSC----CCTTCEEEEESCHHHHHHHHH---------------HTTTEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence            4568899999999999999998764421    122458999999999999999               999999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+.+
T Consensus        89 ~v~~   92 (94)
T 2e5h_A           89 KASI   92 (94)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9876

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=98.80  E-value=2.2e-08  Score=62.05  Aligned_cols=69  Identities=19%  Similarity=0.185  Sum_probs=56.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|........   ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        16 ~t~~~l~~~F~~~G~i~~~~i~~~~~~~~---~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   77 (88)
T 4a8x_A           16 VTKDHIMEIFSTYGKIKMIDMPVERMHPH---LSKGYAYVEFENPDEAEKALK---------------HMDGGQIDGQEI   77 (88)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCEETTEEE---EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhCCCEEEEEEEeCCCCCC---CCCcEEEEEEecHHHHHHHHH---------------HcCCCeECCeEE
Confidence            44678999999999999998876543210   124568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        78 ~v~~a~~   84 (88)
T 4a8x_A           78 TATAVLA   84 (88)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            9998754

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.80  E-value=4e-08  Score=65.47  Aligned_cols=65  Identities=18%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++.+++||.|.++.|......    ....+-.||+|.+.++|.+|+.               .|||+.+.||.|.
T Consensus       100 t~~~l~~~f~~~G~i~~~~i~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~i~  160 (166)
T 3md3_A          100 DDETLRNAFKDFPSYLSGHVMWDMQT----GSSRGYGFVSFTSQDDAQNAMD---------------SMQGQDLNGRPLR  160 (166)
T ss_dssp             CHHHHHHHHTTSTTEEEEEEEECTTT----CCEEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHhccCCeeEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHH---------------HhCCCccCCcEEE
Confidence            45789999999999999999876432    1234568999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.|-
T Consensus       161 v~~a  164 (166)
T 3md3_A          161 INWA  164 (166)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            8864

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.80  E-value=1.6e-08  Score=67.28  Aligned_cols=68  Identities=19%  Similarity=0.161  Sum_probs=58.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+          +..||+|.+.++|.+|+.               .|||..|.||.|
T Consensus        22 ~te~~L~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   76 (111)
T 1whx_A           22 TLAAEIQETFSRFGSLGRVLLPEGG----------ITAIVEFLEPLEARKAFR---------------HLAYSKFHHVPL   76 (111)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCSSS----------SCEEEEESCHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeCCC----------CEEEEEeCCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            4578899999999999998886422          248999999999999999               999999999999


Q ss_pred             EEEEecccccccc
Q psy2134          88 RAELYDQSLFDHN  100 (104)
Q Consensus        88 ~a~~yd~~~f~~~  100 (104)
                      ...+-....|..+
T Consensus        77 ~V~~a~~~~~~~~   89 (111)
T 1whx_A           77 YLEWAPIGVFGAA   89 (111)
T ss_dssp             EEEEEETTTTCCC
T ss_pred             EEEECCCCccCCC
Confidence            9999888777654

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=98.79  E-value=3.5e-08  Score=62.29  Aligned_cols=65  Identities=23%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+..     ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        28 ~~~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   87 (95)
T 2ywk_A           28 VREEILYELFLQAGPLTKVTICKDREG-----KPKSFGFVCFKHPESVSYAIA---------------LLNGIRLYGRPI   87 (95)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTS-----CEEEEEEEEESSTHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH---------------HhCCCEECCCEE
Confidence            346889999999999999999876431     235679999999999999999               999999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      .+.+-
T Consensus        88 ~V~~a   92 (95)
T 2ywk_A           88 NVSGP   92 (95)
T ss_dssp             EEECC
T ss_pred             EEEEc
Confidence            98764

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=98.79  E-value=6e-09  Score=64.85  Aligned_cols=59  Identities=15%  Similarity=0.147  Sum_probs=48.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe-EE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR-MV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR-~V   87 (104)
                      .++++++-+++||.|.+|.|+....      ...+-.||+|.+.++|.+|+.               .|||+.+.|| .|
T Consensus        20 t~~~l~~~F~~~G~i~~v~i~~~~g------~~~g~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~~l   78 (81)
T 2krb_A           20 LKNVIHKIFSKFGKITNDFYPEEDG------KTKGYIFLEYASPAHAVDAVK---------------NADGYKLDKQHTF   78 (81)
T ss_dssp             HHHHHHHHHHTTCCEEEEECCCBTT------BCCCEEEEEESSHHHHHHHHT---------------TSSSCCCSSSSCC
T ss_pred             HHHHHHHHHhhcCCeEEEEecCCCC------cEeEEEEEEECCHHHHHHHHH---------------HhcCcccCCceeE
Confidence            5689999999999999998873221      224568999999999999999               8888888888 66


Q ss_pred             E
Q psy2134          88 R   88 (104)
Q Consensus        88 ~   88 (104)
                      +
T Consensus        79 ~   79 (81)
T 2krb_A           79 R   79 (81)
T ss_dssp             C
T ss_pred             E
Confidence            4

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=98.77  E-value=9.5e-09  Score=66.87  Aligned_cols=69  Identities=13%  Similarity=0.080  Sum_probs=57.3

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC-e
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG-R   85 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G-R   85 (104)
                      -..++++++-+++||.|.+|.|+..+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.| |
T Consensus        23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg----~~kG~afV~f~~~~~A~~Ai~---------------~lng~~~~g~r   83 (100)
T 3ns6_A           23 PVLKKALTSLFSKAGKVVNMEFPIDEATG----KTKGFLFVECGSMNDAKKIIK---------------SFHGKRLDLKH   83 (100)
T ss_dssp             HHHHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCBSSSSC
T ss_pred             HHHHHHHHHHHHhcCCEeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCcccCCCe
Confidence            56678899999999999999998765421    123568999999999999999               999999999 9


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|.+.+..+
T Consensus        84 ~l~V~~a~~   92 (100)
T 3ns6_A           84 RLFLYTMKD   92 (100)
T ss_dssp             BCEEEESHH
T ss_pred             EEEEEECch
Confidence            999887643

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.77  E-value=3.3e-08  Score=63.50  Aligned_cols=63  Identities=19%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             hhHHH----HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134          10 YNEKQ----SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus        10 ~~ev~----~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      ++|++    +-+++||.|.+|.|......       .+..||+|.+.++|.+|+.               .|||..+.||
T Consensus        23 ~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-------rg~afV~f~~~~~A~~Ai~---------------~l~g~~~~gr   80 (96)
T 2dgx_A           23 RKELQQLLQEAFARHGKVKSVELSPHTDY-------QLKAVVQMENLQDAIGAVN---------------SLHRYKIGSK   80 (96)
T ss_dssp             HHHHHHHHHHHHHHHSCEEEEEECSCCST-------TCCEEEEESSHHHHHHHHH---------------HHTTEEETTE
T ss_pred             HHHHHHHHHHhccccCcEEEEEEEeCCCC-------CeEEEEEECCHHHHHHHHH---------------HhCCCEECCe
Confidence            45565    88999999999999876542       2468999999999999999               9999999999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|++.+-..
T Consensus        81 ~l~V~~a~~   89 (96)
T 2dgx_A           81 KILVSLATG   89 (96)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEEcCC
Confidence            999987643

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=98.76  E-value=6.3e-08  Score=63.36  Aligned_cols=68  Identities=18%  Similarity=0.327  Sum_probs=57.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+..    ....+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   87 (115)
T 2dgo_A           27 ITTEDIKAAFAPFGRISDARVVKDMAT----GKSKGYGFVSFFNKWDAENAIQ---------------QMGGQWLGGRQI   87 (115)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            346789999999999999999876432    1235678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        88 ~V~~a~~   94 (115)
T 2dgo_A           88 RTNWATR   94 (115)
T ss_dssp             EEEESSC
T ss_pred             EEEEccC
Confidence            9998754

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.76  E-value=4.3e-08  Score=64.62  Aligned_cols=69  Identities=22%  Similarity=0.268  Sum_probs=55.1

Q ss_pred             hhHHH---HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134          10 YNEKQ---SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus        10 ~~ev~---~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      ++|++   +-+++||.|.+|.|....... ......+-.||+|.+.++|.+|+.               .|||..+.||.
T Consensus        29 ~~~l~~~~~~F~~~G~i~~v~i~~~~~~~-~~~~~~G~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~   92 (111)
T 2cpi_A           29 DPEVLKRPEYFGKFGKIHKVVINNSTSYA-GSQGPSASAYVTYIRSEDALRAIQ---------------CVNNVVVDGRT   92 (111)
T ss_dssp             CHHHHHSTTTTTTTSCEEEEEEECCSSCC-SSSCCCEEEEEEESSHHHHHHHHH---------------HHTTEEETTEE
T ss_pred             HHHHHHHHHHhhccCCEEEEEEecCCCcC-ccCCCCeEEEEEECcHHHHHHHHH---------------HhCCCEECCEE
Confidence            46777   789999999999997654321 111224679999999999999999               99999999999


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      |.+.+-..
T Consensus        93 l~V~~a~~  100 (111)
T 2cpi_A           93 LKASLGTT  100 (111)
T ss_dssp             EEEESCCC
T ss_pred             EEEEeccc
Confidence            99987644

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.76  E-value=5.2e-08  Score=62.63  Aligned_cols=69  Identities=16%  Similarity=0.226  Sum_probs=57.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..|.|+.|
T Consensus        27 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   87 (103)
T 2cq0_A           27 TRETDLQELFRPFGSISRIYLAKDKTTG----QSKGFAFISFHRREDAARAIA---------------GVSGFGYDHLIL   87 (103)
T ss_dssp             CCHHHHHTTSTTTCCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence            4467888889999999999998765321    234678999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+....
T Consensus        88 ~v~~a~~~   95 (103)
T 2cq0_A           88 NVEWAKPS   95 (103)
T ss_dssp             EEEESSCC
T ss_pred             EEEECCCC
Confidence            99986543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.75  E-value=3.3e-08  Score=69.07  Aligned_cols=68  Identities=16%  Similarity=0.191  Sum_probs=57.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++.+++||.|.+|.|......    ....+..||+|.+.++|.+|+.               .|||+.|.||.|
T Consensus       137 ~t~~~l~~~f~~~G~v~~v~i~~~~~~----g~~~g~afV~F~~~~~A~~A~~---------------~l~g~~~~g~~i  197 (216)
T 2qfj_A          137 LSDDDIKSVFEAFGKIKSATLARDPTT----GKHKGYGFIEYEKAQSSQDAVS---------------SMNLFDLGGQYL  197 (216)
T ss_dssp             CCHHHHHHHHTTSSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCBCSSSBC
T ss_pred             CCHHHHHHHHhccCCeeEEEEEecCCC----CCcCceEEEEecCHHHHHHHHH---------------HccCCEeCCcEE
Confidence            347899999999999999999876432    1234678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus       198 ~V~~a~~  204 (216)
T 2qfj_A          198 RVGKAVT  204 (216)
T ss_dssp             EEEECSS
T ss_pred             EEEEecC
Confidence            9987654

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.75  E-value=1.1e-07  Score=61.15  Aligned_cols=68  Identities=22%  Similarity=0.162  Sum_probs=57.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+..      ..+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   85 (103)
T 2cqi_A           27 VTEVLILQLFSQIGPCKSCKMITEHTS------NDPYCFVEFYEHRDAAAALA---------------AMNGRKILGKEV   85 (103)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEEECCCCS------SCCEEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCEeEEEEEecCCC------CCCEEEEEECCHHHHHHHHH---------------HhCCCCcCCCeE
Confidence            346788989999999999999886442      23578999999999999999               999999999999


Q ss_pred             EEEEecccc
Q psy2134          88 RAELYDQSL   96 (104)
Q Consensus        88 ~a~~yd~~~   96 (104)
                      .+.+-....
T Consensus        86 ~V~~a~~~~   94 (103)
T 2cqi_A           86 KVNWATTPS   94 (103)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECCCCc
Confidence            999876543

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.75  E-value=3.8e-08  Score=62.14  Aligned_cols=68  Identities=22%  Similarity=0.320  Sum_probs=57.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        17 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   77 (95)
T 2dnz_A           17 ITEDMLRGIFEPFGKIDNIVLMKDSDTG----RSKGYGFITFSDSECARRALE---------------QLNGFELAGRPM   77 (95)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEECCSSSC----CCCSEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred             CCHHHHHHHHHhcCCEeEEEEeecCCCC----ceeeEEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence            4568899999999999999998765421    223568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        78 ~V~~a~~   84 (95)
T 2dnz_A           78 RVGHVTE   84 (95)
T ss_dssp             EEEESSC
T ss_pred             EEEEccc
Confidence            9998754

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.75  E-value=5.9e-08  Score=61.81  Aligned_cols=69  Identities=19%  Similarity=0.178  Sum_probs=56.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|.......    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        20 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   80 (99)
T 1whw_A           20 SSEEDLEKLFSAYGPLSELHYPIDSLTK----KPKGFAFVTFMFPEHAVKAYA---------------EVDGQVFQGRML   80 (99)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCCCTTTC----CCCSEEEEEESSHHHHHHHHH---------------HTTTEESSSCEE
T ss_pred             CCHHHHHHHHHhcCCEeEEEEEecCCCC----CcCeEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            3467899999999999999987755321    223568999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+....
T Consensus        81 ~V~~a~~~   88 (99)
T 1whw_A           81 HVLPSTIK   88 (99)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99987554

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=98.75  E-value=7.7e-08  Score=62.03  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=55.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+..     ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        41 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l  100 (107)
T 3ulh_A           41 VSDADIQELFAEFGTLKKAAVHYDRSG-----RSLGTADVHFERKADALKAMK---------------QYNGVPLDGRPM  100 (107)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence            346788888999999999999876521     235678999999999999999               999999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      .+.+-
T Consensus       101 ~V~~a  105 (107)
T 3ulh_A          101 NIQLV  105 (107)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            98874

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=98.74  E-value=2.5e-08  Score=65.22  Aligned_cols=64  Identities=16%  Similarity=0.188  Sum_probs=54.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe-EE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR-MV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR-~V   87 (104)
                      .++++++-+++||.|.+|.|+....      ...+-.||+|.+.++|.+|+.               .|||..|.|| .|
T Consensus        34 t~~~l~~~F~~~G~v~~v~i~~~~g------~~~G~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~~l   92 (105)
T 2nlw_A           34 LKNVIHKIFSKFGKITNDFYPEEDG------KTKGYIFLEYASPAHAVDAVK---------------NADGYKLDKQHTF   92 (105)
T ss_dssp             HHHHHHHHHGGGSCEEEEECCCBTT------BSCCEEEEEECSSSHHHHHHH---------------HCSSEECSTTCEE
T ss_pred             HHHHHHHHHhcCCCEEEEEeeCCCC------CeeeEEEEEECCHHHHHHHHH---------------HhCCcccCCCceE
Confidence            5788999999999999998873211      223568999999999999999               9999999999 99


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+.+
T Consensus        93 ~V~~a~   98 (105)
T 2nlw_A           93 RVNLFT   98 (105)
T ss_dssp             EEECSC
T ss_pred             EEEEcc
Confidence            998874

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=98.74  E-value=5.6e-08  Score=65.73  Aligned_cols=64  Identities=9%  Similarity=0.139  Sum_probs=54.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.+|.|...+..    ....+..||+|.+.++|.+|+.               .|||+.+.||.|.
T Consensus       107 t~~~l~~~f~~~G~v~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~  167 (172)
T 2g4b_A          107 NDDQVKELLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIA---------------GLNGMQLGDKKLL  167 (172)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECTTT----CSEEEEEEEEESSTTHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCceEEEEEecCCC----CCcceEEEEEeCCHHHHHHHHH---------------HcCCCEECCeEEE
Confidence            36789999999999999999876432    1234679999999999999999               9999999999999


Q ss_pred             EEE
Q psy2134          89 AEL   91 (104)
Q Consensus        89 a~~   91 (104)
                      +.+
T Consensus       168 V~~  170 (172)
T 2g4b_A          168 VQR  170 (172)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=98.73  E-value=7.9e-08  Score=61.24  Aligned_cols=69  Identities=16%  Similarity=0.181  Sum_probs=57.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   74 (96)
T 2x1f_A           14 QTEEQILDLCSNVGPVINLKMMFDPQTG----RSKGYAFIEFRDLESSASAVR---------------NLNGYQLGSRFL   74 (96)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCBCTTTC----CBCSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEeCCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence            3467889999999999999998764321    224568999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        75 ~V~~a~~~   82 (96)
T 2x1f_A           75 KCGYSSNS   82 (96)
T ss_dssp             EEEECSCS
T ss_pred             EEEEcCCC
Confidence            99987554

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=98.73  E-value=7.3e-08  Score=64.04  Aligned_cols=65  Identities=18%  Similarity=0.207  Sum_probs=55.9

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..++..      ..+-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus        18 te~~L~~~F~~~G~v~~v~i~~d~~~------~kg~afV~f~~~~~A~~Ai~---------------~l~~~~~~g~~i~   76 (115)
T 4f25_A           18 DNKALYDTFSAFGNILSCKVVCDENG------SKGYGFVHFETQEAAERAIE---------------KMNGMLLNDRKVF   76 (115)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEEETTE------EEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHhccCCEEEEEEeecCCC------CCceEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            46788889999999999999876431      24678999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+...
T Consensus        77 V~~a~~   82 (115)
T 4f25_A           77 VGRFKS   82 (115)
T ss_dssp             EEESSC
T ss_pred             EEECCC
Confidence            988754

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=1e-07  Score=60.93  Aligned_cols=67  Identities=12%  Similarity=0.185  Sum_probs=56.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|......     ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        29 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   88 (100)
T 2do4_A           29 CTKEELEEICKAHGTVKDLRLVTNRAG-----KPKGLAYVEYENESQASQAVM---------------KMDGMTIKENII   88 (100)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTEESSSCEE
T ss_pred             CCHHHHHHHHHhCCCeEEEEEEECCCC-----CEEeEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            346789999999999999999876521     234679999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        89 ~v~~a~~   95 (100)
T 2do4_A           89 KVAISNS   95 (100)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9987643

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.72  E-value=1.9e-07  Score=60.00  Aligned_cols=68  Identities=19%  Similarity=0.244  Sum_probs=57.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|......      ..+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~f~~~G~v~~v~i~~~~~~------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   85 (103)
T 2cq3_A           27 FRDPDLRQMFGQFGKILDVEIIFNERG------SKGFGFVTFENSADADRARE---------------KLHGTVVEGRKI   85 (103)
T ss_dssp             CCHHHHHHHGGGTSCEEEEEEECCTTT------TCCEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCC------CcEEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            346788989999999999999876432      23568999999999999999               999999999999


Q ss_pred             EEEEecccc
Q psy2134          88 RAELYDQSL   96 (104)
Q Consensus        88 ~a~~yd~~~   96 (104)
                      .+.+-....
T Consensus        86 ~v~~a~~~~   94 (103)
T 2cq3_A           86 EVNNATARV   94 (103)
T ss_dssp             EEEECCSSC
T ss_pred             EEEEcccCC
Confidence            999876543

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=98.71  E-value=7.4e-08  Score=62.03  Aligned_cols=67  Identities=15%  Similarity=0.283  Sum_probs=55.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+.+    ....+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        35 ~t~~~l~~~f~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   95 (106)
T 1p27_B           35 ATEEDIHDKFAEYGEIKNIHLNLDRRT----GYLKGYTLVEYETYKEAQAAME---------------GLNGQDLMGQPI   95 (106)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTT----SSEEEEEEEEESCHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred             CCHHHHHHHHhccCCeEEEEEEecCCC----CceeeEEEEEECCHHHHHHHHH---------------HhcCCEECCcEE
Confidence            346789999999999999999876542    1235679999999999999999               899999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        96 ~V~~a~  101 (106)
T 1p27_B           96 SVDWCF  101 (106)
T ss_dssp             EEEESE
T ss_pred             EEEeec
Confidence            988753

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.70  E-value=4.9e-08  Score=62.49  Aligned_cols=69  Identities=20%  Similarity=0.223  Sum_probs=56.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   84 (102)
T 2cqb_A           24 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI   84 (102)
T ss_dssp             CCHHHHHHHHTTTSCCCCEECCCCSSSC----CCSSEEEECCSSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHhhccCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            3468899999999999999987754321    123568999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        85 ~V~~a~~~   92 (102)
T 2cqb_A           85 RVNLAKPM   92 (102)
T ss_dssp             EEEECCCC
T ss_pred             EEEeCCCC
Confidence            99987554

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.70  E-value=1.1e-07  Score=61.77  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=55.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|..|.|.....+       .+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        34 ~t~~~l~~~F~~~G~v~~~~i~~~~~~-------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   91 (109)
T 1x4a_A           34 IRTKDIEDVFYKYGAIRDIDLKNRRGG-------PPFAFVEFEDPRDAEDAVY---------------GRDGYDYDGYRL   91 (109)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEECCSSSS-------SCCEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC-------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence            346789999999999999999654332       3468999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        92 ~V~~a~~   98 (109)
T 1x4a_A           92 RVEFPRS   98 (109)
T ss_dssp             EEECCCC
T ss_pred             EEEEccc
Confidence            9987654

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=1.5e-07  Score=61.23  Aligned_cols=67  Identities=19%  Similarity=0.186  Sum_probs=56.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|......     ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~~~~~l~~~f~~~G~i~~~~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   86 (114)
T 2do0_A           27 VGWKKLKEVFSMAGVVVRADILEDKDG-----KSRGIGTVTFEQSIEAVQAIS---------------MFNGQLLFDRPM   86 (114)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECTTC-----SEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC-----CeeeEEEEEECCHHHHHHHHH---------------HhCCCEeCCCEE
Confidence            346789999999999999999876431     235679999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        87 ~v~~a~~   93 (114)
T 2do0_A           87 HVKMDER   93 (114)
T ss_dssp             EEEECSC
T ss_pred             EEEEccc
Confidence            9998643

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=98.69  E-value=7.3e-08  Score=63.04  Aligned_cols=65  Identities=18%  Similarity=0.271  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|.....+       .+..||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~-------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   77 (115)
T 3lqv_A           20 ITAEEMYDIFGKYGPIRQIRVGNTPET-------RGTAYVVYEDIFDAKNAVD---------------HLSGFNVSNRYL   77 (115)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEECSTTT-------TTCEEEEESSHHHHHHHHH---------------HHTTCBSSSCBC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeeCCCC-------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence            346788999999999999999865432       3458999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        78 ~v~~a~~   84 (115)
T 3lqv_A           78 VVLYYNA   84 (115)
T ss_dssp             EEEECCH
T ss_pred             EEEEecC
Confidence            9998764

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=98.69  E-value=9.5e-08  Score=62.65  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=57.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+..    ....+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   97 (115)
T 2cpz_A           37 FGDQDLLQMFMPFGNVVSAKVFIDKQT----NLSKCFGFVSYDNPVSAQAAIQ---------------SMNGFQIGMKRL   97 (115)
T ss_dssp             CCHHHHHHHHGGGSCCSEEEEEECSSS----CSEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC----CCcCccEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            346789999999999999999876532    1234678999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        98 ~V~~a~~~  105 (115)
T 2cpz_A           98 KVQLKRSK  105 (115)
T ss_dssp             EEECCCCS
T ss_pred             EEEEcCCC
Confidence            99976543

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.69  E-value=1.4e-07  Score=60.35  Aligned_cols=61  Identities=16%  Similarity=0.254  Sum_probs=52.5

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++-+++||.|.+|.|...+          +..||+|.+.++|.+|+.               .|||..+.|+.|.+
T Consensus        27 ~~~l~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l~v   81 (97)
T 1x5p_A           27 PTLLRGAFSPFGNIIDLSMDPPR----------NCAFVTYEKMESADQAVA---------------ELNGTQVESVQLKV   81 (97)
T ss_dssp             HHHHHHHHTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HTTTEEETTEEEEE
T ss_pred             HHHHHHHHhhCCCEEEEEecCCC----------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEEE
Confidence            57888899999999999985322          358999999999999999               99999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .+-...
T Consensus        82 ~~a~~~   87 (97)
T 1x5p_A           82 NIARKQ   87 (97)
T ss_dssp             ECCSSC
T ss_pred             EECCCC
Confidence            876543

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.68  E-value=8.7e-08  Score=60.71  Aligned_cols=65  Identities=20%  Similarity=0.256  Sum_probs=54.5

Q ss_pred             eehhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-.+|+++-+++||.|.+| .|...+..        ++.||+|.+.++|.+|+.               .|||..+.||.
T Consensus        27 ~t~~~l~~~F~~~G~v~~~~~i~~~~~~--------~~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~   83 (96)
T 2e44_A           27 LQWEVLDSLLVQYGVVESCEQVNTDSET--------AVVNVTYSSKDQARQALD---------------KLNGFQLENFT   83 (96)
T ss_dssp             SCHHHHHHHHHHHSCEEEEEEECCSSSS--------EEEEEEESSHHHHHHHHH---------------HHTTCBCSSCB
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeecCCCC--------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcE
Confidence            3467888889999999998 47664432        239999999999999999               99999999999


Q ss_pred             EEEEEeccc
Q psy2134          87 VRAELYDQS   95 (104)
Q Consensus        87 V~a~~yd~~   95 (104)
                      |.+.+....
T Consensus        84 l~V~~a~~~   92 (96)
T 2e44_A           84 LKVAYIPDE   92 (96)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999987654

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.68  E-value=3.9e-08  Score=62.98  Aligned_cols=69  Identities=25%  Similarity=0.363  Sum_probs=57.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..|.|+.|
T Consensus        24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   84 (102)
T 1x5s_A           24 TNEQSLEQVFSKYGQISEVVVVKDRETQ----RSRGFGFVTFENIDDAKDAMM---------------AMNGKSVDGRQI   84 (102)
T ss_dssp             CCHHHHHHHHHHHSCCCEEEECCCSSSC----SCCSEEEEECSSHHHHHHHHH---------------HHTTCCTTSCCC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CcccEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            4467899999999999999998754321    123568999999999999999               899999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        85 ~v~~a~~~   92 (102)
T 1x5s_A           85 RVDQAGKS   92 (102)
T ss_dssp             EEEEEECC
T ss_pred             EEEECCCC
Confidence            99987553

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.67  E-value=7.9e-08  Score=64.08  Aligned_cols=65  Identities=23%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE-
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM-   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~-   86 (104)
                      .-.+++++.+++||.|.++.|......    ....+..||+|.+.++|.+|+.               .|||+.+.||. 
T Consensus       100 ~t~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~~  160 (167)
T 1fxl_A          100 MTQKELEQLFSQYGRIITSRILVDQVT----GVSRGVGFIRFDKRIEAEEAIK---------------GLNGQKPSGATE  160 (167)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSS
T ss_pred             CCHHHHHHHHHhcCCEeEEEEEecCCC----CCccceEEEEeCCHHHHHHHHH---------------HhcCCccCCCcc
Confidence            346889999999999999999875432    1234678999999999999999               88888888875 


Q ss_pred             -EEEEE
Q psy2134          87 -VRAEL   91 (104)
Q Consensus        87 -V~a~~   91 (104)
                       |...|
T Consensus       161 ~i~v~~  166 (167)
T 1fxl_A          161 PITVKF  166 (167)
T ss_dssp             CCEEEE
T ss_pred             ceEEEe
Confidence             55543

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=98.67  E-value=6.8e-08  Score=63.45  Aligned_cols=65  Identities=23%  Similarity=0.260  Sum_probs=54.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        52 ~t~~~l~~~F~~~G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l  112 (118)
T 2khc_A           52 FTDTDLASTFLPFGNVISAKVFIDKQTS----LSKCFGFVSFDNPDSAQVAIK---------------AMNGFQVGTKRL  112 (118)
T ss_dssp             CCHHHHHHHTTTSCEEEEEEECCCSSSS----CCCCEEEEEEESSHHHHHHHH---------------HCCCCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEeCCCCC----CcCcEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            3467899999999999999998654321    224568999999999999999               999999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ++++
T Consensus       113 ~V~~  116 (118)
T 2khc_A          113 KVQL  116 (118)
T ss_dssp             CEEE
T ss_pred             EEEe
Confidence            8875

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.67  E-value=6.3e-08  Score=62.00  Aligned_cols=68  Identities=19%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|......    ....+..||+|.+.++|.+|+.               .|||..|.|+.|
T Consensus        20 ~~~~~l~~~f~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   80 (104)
T 1p1t_A           20 ATEEQLKDIFSEVGPVVSFRLVYDRET----GKPKGYGFCEYQDQETALSAMR---------------NLNGREFSGRAL   80 (104)
T ss_dssp             SCHHHHHHHHHTTSCCSEEEEEEETTT----TEEEEEEEEECSCHHHHHHHHH---------------HSSSBSCSSSCB
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEeCCCC----CccceEEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence            446789999999999999999876432    1235679999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        81 ~v~~a~~   87 (104)
T 1p1t_A           81 RVDNAAS   87 (104)
T ss_dssp             EEEETTC
T ss_pred             EEEeCCC
Confidence            9987654

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=98.66  E-value=8.6e-08  Score=60.14  Aligned_cols=66  Identities=20%  Similarity=0.148  Sum_probs=55.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|..+..      ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        20 ~t~~~l~~~f~~~G~v~~~~i~~~~g------~~~g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l   78 (92)
T 2dgv_A           20 FTWKMLKDKFNECGHVLYADIKMENG------KSKGCGVVKFESPEVAERACR---------------MMNGMKLSGREI   78 (92)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEEESSS------CEEEEEEEEESSHHHHHHHHH---------------HHTTCCBTTBCC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEccCC------CcceEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            34688999999999999999986321      234678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        79 ~v~~a~~   85 (92)
T 2dgv_A           79 DVRIDRN   85 (92)
T ss_dssp             CCEECSC
T ss_pred             EEEEcCC
Confidence            9887644

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.66  E-value=8.2e-08  Score=60.65  Aligned_cols=69  Identities=14%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             eehhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-++|+++-+++||.|.+| .|..++...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.
T Consensus        17 ~t~~~l~~~F~~~G~i~~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~   77 (96)
T 1x5t_A           17 IDEKLLYDTFSAFGVILQTPKIMRDPDTG----NSKGYAFINFASFDASDAAIE---------------AMNGQYLCNRP   77 (96)
T ss_dssp             CCHHHHHHHHHTTSCBSSCCEECCCTTTC----SCCSEEEEEBSSHHHHHHHHH---------------TTTTCEETTEE
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEEEcCCCC----CcCeEEEEEECCHHHHHHHHH---------------HcCCCEECCEE
Confidence            3468899999999999998 887653321    123568999999999999999               99999999999


Q ss_pred             EEEEEeccc
Q psy2134          87 VRAELYDQS   95 (104)
Q Consensus        87 V~a~~yd~~   95 (104)
                      |.+.+-...
T Consensus        78 l~v~~a~~~   86 (96)
T 1x5t_A           78 ITVSYAFKK   86 (96)
T ss_dssp             CEEEESCCC
T ss_pred             EEEEEeccc
Confidence            999987543

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=9.7e-08  Score=61.34  Aligned_cols=66  Identities=21%  Similarity=0.226  Sum_probs=55.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|... .     ....+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~-~-----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   85 (103)
T 2d9p_A           27 IDDERLRKAFSPFGTITSAKVMME-G-----GRSKGFGFVCFSSPEEATKAVT---------------EMNGRIVATKPL   85 (103)
T ss_dssp             CCHHHHHHTTTTTSCEEEEEEEEC-S-----SSEEEEEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEcC-C-----CCcCEEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence            346788989999999999999875 1     1234678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        86 ~V~~a~~   92 (103)
T 2d9p_A           86 YVALAQR   92 (103)
T ss_dssp             EEEECSS
T ss_pred             EEEEecc
Confidence            9998654

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.65  E-value=1.4e-07  Score=60.00  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|........ .....+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        17 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~g-t~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   80 (98)
T 2cpf_A           17 TTEETLKGVFSKVGAIKSCTISKKKNKAG-VLLSMGFGFVEYKKPEQAQKALK---------------QLQGHTVDGHKL   80 (98)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEEEEECTTC-CEEEEEEEEEEESSHHHHHHHHH---------------HSTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCCC-CcCcccEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence            34678899999999999999987543110 00234679999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        81 ~V~~a~~~   88 (98)
T 2cpf_A           81 EVRISERA   88 (98)
T ss_dssp             EEECSSCS
T ss_pred             EEEEccCC
Confidence            99876543

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.65  E-value=1e-07  Score=64.00  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=53.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--e
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--R   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R   85 (104)
                      .-.+|+++-+++||.|..|.|+..+...    ...+..||+|.+.++|.+|+.               .|||+.+.|  +
T Consensus       101 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~~  161 (168)
T 1b7f_A          101 ITDDQLDTIFGKYGSIVQKNILRDKLTG----RPRGVAFVRYNKREEAQEAIS---------------ALNNVIPEGGSQ  161 (168)
T ss_dssp             CCHHHHHHHHTSSSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSS
T ss_pred             CCHHHHHHhhhcCCcEEEEEEEEcCCCC----CcceEEEEEECCHHHHHHHHH---------------HhcCCEecCCCe
Confidence            3467899999999999999998765321    234678999999999999999               888888877  8


Q ss_pred             EEEEEE
Q psy2134          86 MVRAEL   91 (104)
Q Consensus        86 ~V~a~~   91 (104)
                      .|...|
T Consensus       162 ~l~V~~  167 (168)
T 1b7f_A          162 PLSVRL  167 (168)
T ss_dssp             CCEEEE
T ss_pred             EEEEEe
Confidence            887764

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=1.3e-07  Score=58.55  Aligned_cols=59  Identities=17%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR~   86 (104)
                      .-.+|+++-+++||.|.+|.|...+          +..||+|.+.++|.+|+.               .| ||..+.|+.
T Consensus        24 ~t~~~l~~~f~~~G~i~~~~~~~~k----------g~afV~f~~~~~A~~a~~---------------~l~~~~~~~g~~   78 (85)
T 2ytc_A           24 ITETDLRNHFYQFGEIRTITVVQRQ----------QCAFIQFATRQAAEVAAE---------------KSFNKLIVNGRR   78 (85)
T ss_dssp             SCHHHHHHHHHTTSCEEEEEEEGGG----------TEEEEEESSHHHHHHHHH---------------TTTTTCEETTEE
T ss_pred             CCHHHHHHHHHhCCCEeEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhcCCeeECCCE
Confidence            3467888899999999999998632          368999999999999999               88 999999999


Q ss_pred             EEEEE
Q psy2134          87 VRAEL   91 (104)
Q Consensus        87 V~a~~   91 (104)
                      +...+
T Consensus        79 l~v~~   83 (85)
T 2ytc_A           79 LNVKW   83 (85)
T ss_dssp             CCEEE
T ss_pred             EEEEe
Confidence            98775

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=98.65  E-value=1.2e-07  Score=63.29  Aligned_cols=65  Identities=22%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-.++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        75 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l  135 (140)
T 2ku7_A           75 VDDKVLHAAFIPFGDITDIQIPLDYETE----KHRGFAFVEFELAEDAAAAID---------------NMNESELFGRTI  135 (140)
T ss_dssp             CCHHHHHHHHGGGSCEEEEECCCCTTTC----CCCSEEEEEESCHHHHHHHHH---------------HSTEEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeecCCCC----CcCcEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            4468899999999999999987764321    234568999999999999999               999999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+.+
T Consensus       136 ~v~~  139 (140)
T 2ku7_A          136 RVNL  139 (140)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8864

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=98.65  E-value=1.5e-07  Score=61.03  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|.......    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        38 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   98 (110)
T 1oo0_B           38 AQEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKE---------------ALNGAEIMGQTI   98 (110)
T ss_dssp             CCHHHHHHHHGGGSCEEEEECCBCTTTS----SBCSEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence            3467889999999999999987654321    123568999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        99 ~V~~a~  104 (110)
T 1oo0_B           99 QVDWCF  104 (110)
T ss_dssp             EEEESE
T ss_pred             EEEEcc
Confidence            998754

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.65  E-value=4.9e-08  Score=62.74  Aligned_cols=68  Identities=25%  Similarity=0.295  Sum_probs=56.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        25 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   85 (103)
T 2dnm_A           25 TSPDSLRRVFEKYGRVGDVYIPREPHTK----APRGFAFVRFHDRRDAQDAEA---------------AMDGAELDGREL   85 (103)
T ss_dssp             CCHHHHHHHHTTTSCEEEEECCBCSSSC----SBCSCEEEEESSSSHHHHHHH---------------HHSSCCBTTBCC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEeCCCCC----CCCeEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence            3467899999999999999988754321    123468999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        86 ~V~~a~~   92 (103)
T 2dnm_A           86 RVQVARY   92 (103)
T ss_dssp             EEEECSS
T ss_pred             EEEECCc
Confidence            9998654

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2.1e-07  Score=58.61  Aligned_cols=61  Identities=26%  Similarity=0.297  Sum_probs=53.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||.|.+|.|...            ..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        21 ~t~~~l~~~F~~~G~v~~~~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   73 (90)
T 2dnp_A           21 CTSQELRSLFERRGRVIECDVVKD------------YAFVHMEKEADAKAAIA---------------QLNGKEVKGKRI   73 (90)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEECSS------------CEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHcCCCEEEEEEECC------------EEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            346788989999999999988742            48999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+....
T Consensus        74 ~v~~a~~~   81 (90)
T 2dnp_A           74 NVELSTKG   81 (90)
T ss_dssp             EEEESCCC
T ss_pred             EEEECCCC
Confidence            99987654

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=98.64  E-value=1.1e-07  Score=60.78  Aligned_cols=65  Identities=18%  Similarity=0.333  Sum_probs=54.3

Q ss_pred             eehhHHHHHhhhCCceeE--------EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134           8 VIYNEKQSDDEAYGQVEK--------VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG   79 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~k--------V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG   79 (104)
                      .-++|+++-+++||.|.+        |.|...+.+    ....+-.||+|.+.++|.+|+.               .|||
T Consensus        25 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----g~~~G~afV~f~~~~~a~~Ai~---------------~l~g   85 (99)
T 2la6_A           25 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----GKLKGEATVSFDDPPSAKAAID---------------WFDG   85 (99)
T ss_dssp             CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTT----CSEEEEEEEEBSSHHHHHHHHH---------------HHTT
T ss_pred             CCHHHHHHHHHHhCCEeeccccccccEEEEecCCC----CCeeeEEEEEECCHHHHHHHHH---------------HhCC
Confidence            346889999999999999        888876432    1235679999999999999999               9999


Q ss_pred             ceeCCeEEEEEE
Q psy2134          80 RFFAGRMVRAEL   91 (104)
Q Consensus        80 R~F~GR~V~a~~   91 (104)
                      ..+.||.|.+.+
T Consensus        86 ~~~~g~~l~V~~   97 (99)
T 2la6_A           86 KEFSGNPIKVSF   97 (99)
T ss_dssp             CBSSSSBCEEEE
T ss_pred             CEeCCcEEEEEe
Confidence            999999998875

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.64  E-value=8.8e-08  Score=61.56  Aligned_cols=68  Identities=16%  Similarity=0.076  Sum_probs=56.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   87 (105)
T 1x5u_A           27 VSEPLLWELFLQAGPVVNTHMPKDRVTG----QHQGYGFVEFLSEEDADYAIK---------------IMDMIKLYGKPI   87 (105)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCBCSSSC----SBCSCEEEEESSHHHHHHHHH---------------HSSSCBCSSCBC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----cCCcEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence            3467889999999999999988765321    123468999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        88 ~v~~a~~   94 (105)
T 1x5u_A           88 RVNKASA   94 (105)
T ss_dssp             EEEETTT
T ss_pred             EEEECCC
Confidence            9997654

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=2e-07  Score=58.88  Aligned_cols=61  Identities=23%  Similarity=0.321  Sum_probs=53.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...            ..||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        22 ~t~~~l~~~F~~~G~v~~v~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   74 (92)
T 2dgt_A           22 CTNQELRAKFEEYGPVIECDIVKD------------YAFVHMERAEDAVEAIR---------------GLDNTEFQGKRM   74 (92)
T ss_dssp             CCHHHHHHHHHTTSCCCEEEECSS------------EEEEEESCHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEECC------------EEEEEECCHHHHHHHHH---------------HhCCCeeCCcEE
Confidence            346788999999999999988742            58999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        75 ~V~~a~~~   82 (92)
T 2dgt_A           75 HVQLSTSR   82 (92)
T ss_dssp             EEEESSCC
T ss_pred             EEEEccCC
Confidence            99987543

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=98.63  E-value=1.4e-07  Score=63.55  Aligned_cols=69  Identities=23%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+    ....+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        54 ~~~~~l~~~F~~~G~i~~v~i~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l  114 (139)
T 1u6f_A           54 VDEVQLRQLFERYGPIESVKIVCDRET----RQSRGYGFVKFQSGSSAQQAIA---------------GLNGFNILNKRL  114 (139)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEEEEETTT----TEEEEEEEEEESSHHHHHHHHH---------------HTTTEECSSCEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEEcCCC----CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            346789999999999999999876542    1235679999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus       115 ~v~~a~~~  122 (139)
T 1u6f_A          115 KVALAASG  122 (139)
T ss_dssp             EEEESSCC
T ss_pred             EEEECCCC
Confidence            99987543

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=98.63  E-value=1e-07  Score=64.69  Aligned_cols=64  Identities=17%  Similarity=0.078  Sum_probs=54.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++++++=|+.||+|.++.|..++          |-.||+|.+.++|.+|++               +|||..+.||.|
T Consensus        19 ~te~~L~~lF~q~G~V~~~~l~~~k----------GfaFVey~~~~eA~~Ai~---------------~Ln~~~l~gr~I   73 (89)
T 2wbr_A           19 IDGPTLRTLCMQHGPLVSFHPYLNQ----------GIALCKYTTREEANKAQM---------------ALNNCVLANTTI   73 (89)
T ss_dssp             CCCHHHHHHHHHHSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHHHhhCCEEEEEEcCCC----------cEEEEEECCHHHHHHHHH---------------HhcCCEECCcEE
Confidence            3457788889999999999987632          468999999999999999               999999999999


Q ss_pred             EEEEecccc
Q psy2134          88 RAELYDQSL   96 (104)
Q Consensus        88 ~a~~yd~~~   96 (104)
                      ++.+-.+++
T Consensus        74 ~V~~A~e~~   82 (89)
T 2wbr_A           74 FAESPSENE   82 (89)
T ss_dssp             EEECCCHHH
T ss_pred             EEEECCHHH
Confidence            998875543

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.63  E-value=1.3e-07  Score=60.84  Aligned_cols=69  Identities=22%  Similarity=0.200  Sum_probs=56.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecC-CCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNE-KQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~-~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR   85 (104)
                      .-++|+++-+++||.|.+|.|... ...    ....+..||+|.+.++|.+|+.               .| ||..|.|+
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~~g~   87 (107)
T 2cph_A           27 ANQREIRELFSTFGELKTVRLPKKMTGT----GAHRGFGFVDFITKQDAKKAFN---------------ALCHSTHLYGR   87 (107)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCCCCSSS----CSSCSEEEEEESSHHHHHHHHH---------------HHHTCCBSSSC
T ss_pred             CCHHHHHHHHHccCCeEEEEEecCCCCC----CCcCceEEEEECCHHHHHHHHH---------------HhccCCeECCC
Confidence            346789999999999999998765 221    1223568999999999999999               89 89999999


Q ss_pred             EEEEEEeccc
Q psy2134          86 MVRAELYDQS   95 (104)
Q Consensus        86 ~V~a~~yd~~   95 (104)
                      .|.+.+-...
T Consensus        88 ~l~v~~a~~~   97 (107)
T 2cph_A           88 RLVLEWADSE   97 (107)
T ss_dssp             BCEEEECCCC
T ss_pred             EEEEEeCCCC
Confidence            9999987654

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.62  E-value=1.4e-07  Score=69.36  Aligned_cols=68  Identities=10%  Similarity=0.038  Sum_probs=58.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||.|.+|.|.....+     ...+..||+|.+.++|.+|+.               .|||+.+.|+.|.
T Consensus       198 ~~~~l~~~f~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~  257 (284)
T 3smz_A          198 DVDALCRALSAVHSPTFCQLACGQDG-----QLKGFAVLEYETAEMAEEAQQ---------------QADGLSLGGSHLR  257 (284)
T ss_dssp             CHHHHHHHTCSSSCCSEEEEEECSSC-----CEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHhhCCCCeEEEEEEECCCC-----CcccEEEEEeCCHHHHHHHHH---------------HhCCCccCCeEEE
Confidence            36899999999999999998875431     235679999999999999999               9999999999999


Q ss_pred             EEEecccc
Q psy2134          89 AELYDQSL   96 (104)
Q Consensus        89 a~~yd~~~   96 (104)
                      +.+.....
T Consensus       258 v~~a~~~~  265 (284)
T 3smz_A          258 VSFCAPGP  265 (284)
T ss_dssp             EEECCSSS
T ss_pred             EEEecCCC
Confidence            99986643

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=98.62  E-value=1.8e-07  Score=64.45  Aligned_cols=67  Identities=9%  Similarity=0.117  Sum_probs=56.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++.+++||.|.+|.|...+..    ....+..||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus       127 ~~~~l~~~f~~~G~v~~~~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~  187 (198)
T 2yh0_A          127 NDDQVKELLTSFGPLKAFNLVKDSAT----GLSKGYAFCEYVDINVTDQAIA---------------GLNGMQLGDKKLL  187 (198)
T ss_dssp             CHHHHHHHHHTBSCEEEEEEEECTTT----CSEEEEEEEEESSSSHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHHcCCccEEEEeecCCC----CCcceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            46789999999999999999876432    1235679999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus       188 v~~a~~  193 (198)
T 2yh0_A          188 VQRASV  193 (198)
T ss_dssp             EEESCC
T ss_pred             EEECCC
Confidence            987644

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=98.62  E-value=7e-08  Score=60.86  Aligned_cols=67  Identities=21%  Similarity=0.096  Sum_probs=54.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.++.|......    ..-.+-.||+|.+.++|.+|+.               .|||..+.||.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~~~~~~~~~~----g~~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr~l   87 (95)
T 2ek1_A           27 VSIDEILDFFYGYQVIPGSVCLKYNEK----GMPTGEAMVAFESRDEATAAVI---------------DLNDRPIGSRKV   87 (95)
T ss_dssp             CCHHHHHHHTTTSCBCTTCCEEEECTT----SCEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCccceEEEEeCCC----CCEeeEEEEEECCHHHHHHHHH---------------HhCCCeECCcEE
Confidence            346789999999999987767654332    1234679999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      ...+.+
T Consensus        88 ~v~~a~   93 (95)
T 2ek1_A           88 KLSGPS   93 (95)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            998754

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.61  E-value=9.3e-08  Score=62.97  Aligned_cols=66  Identities=20%  Similarity=0.243  Sum_probs=55.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|......      ..+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        41 ~te~~l~~~F~~~G~i~~v~i~~~~~~------~kg~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   99 (109)
T 2err_A           41 FRDPDLRQMFGQFGKILDVEIIFNERG------SKGFGFVTFENSADADRARE---------------KLHGTVVEGRKI   99 (109)
T ss_dssp             CCHHHHHHHGGGTCCCSCEEECCBTTB------CTTEEEEECCCSHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEECCCC------CceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            446788999999999999999875431      23568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       100 ~V~~a~~  106 (109)
T 2err_A          100 EVNNATA  106 (109)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9987643

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=98.61  E-value=1.8e-07  Score=62.24  Aligned_cols=67  Identities=18%  Similarity=0.200  Sum_probs=56.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|......     ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        47 ~t~~~l~~~F~~~G~v~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l  106 (124)
T 2kt5_A           47 VSDADIQELFAEFGTLKKAAVDYDRSG-----RSLGTADVHFERRADALKAMK---------------QYKGVPLDGRPM  106 (124)
T ss_dssp             CCHHHHHHHHHTTSCCSEEEEECCSSS-----SCCSEEEEEESSHHHHHHHHH---------------HHTTEESSSCEE
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------HcCCCEECCcEE
Confidence            346889999999999999999876521     123568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       107 ~V~~a~~  113 (124)
T 2kt5_A          107 DIQLVAS  113 (124)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9987654

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.61  E-value=1.6e-07  Score=69.08  Aligned_cols=61  Identities=18%  Similarity=0.131  Sum_probs=53.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-CeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR~   86 (104)
                      .-.+|+++.+++||.|.+|.|.....         +..||+|.+.++|.+|+.               .|||+.|. |+.
T Consensus       219 ~~~~~l~~~F~~~G~i~~v~~~~~~~---------g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~~  274 (282)
T 3pgw_A          219 TNELMLSMLFNQFPGFKEVRLVPGRH---------DIAFVEFDNEVQAGAARD---------------ALQGFKITQNNA  274 (282)
T ss_pred             CCHHHHHHHHHhcCCeEEEEEecCCC---------cEEEEEeCCHHHHHHHHH---------------HcCCcEeCCCCE
Confidence            34689999999999999999985432         468999999999999999               99999999 999


Q ss_pred             EEEEEe
Q psy2134          87 VRAELY   92 (104)
Q Consensus        87 V~a~~y   92 (104)
                      |.+.|-
T Consensus       275 l~v~~a  280 (282)
T 3pgw_A          275 MKISFA  280 (282)
T ss_pred             EEEEEe
Confidence            998863

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=98.61  E-value=9.5e-08  Score=63.38  Aligned_cols=68  Identities=15%  Similarity=0.270  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        34 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   94 (126)
T 3ex7_B           34 ATEEDIHDKFAEYGEIKNIHLNLDRRTG----YLKGYTLVEYETYKEAQAAME---------------GLNGQDLMGQPI   94 (126)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCBCTTTS----SBCSCEEEEESSHHHHHHHHH---------------HHTTCBSSSSBC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence            3467899999999999999987664321    123468999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        95 ~v~~a~~  101 (126)
T 3ex7_B           95 SVDWCFV  101 (126)
T ss_dssp             EEEESEE
T ss_pred             EEEEecC
Confidence            9987643

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.61  E-value=1.1e-07  Score=62.82  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=56.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+.+.    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        38 ~te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~F~~~~~A~~Ai~---------------~l~g~~i~g~~l   98 (108)
T 2jrs_A           38 ITEDMLRGIFEPFGRIESIQLMMDSETG----RSKGYGFITFSDSECAKKALE---------------QLNGFELAGRPM   98 (108)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEEETTTT----EEEEEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            4467899999999999999998764421    234679999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        99 ~V~~a~  104 (108)
T 2jrs_A           99 KVGHVT  104 (108)
T ss_dssp             EEECSC
T ss_pred             EEEEcc
Confidence            988653

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=98.61  E-value=2.9e-07  Score=63.35  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=57.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        51 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l  111 (156)
T 1h2v_Z           51 TTEEQIYELFSKSGDIKKIIMGLDKMKK----TACGFCFVEYYSRADAENAMR---------------YINGTRLDDRII  111 (156)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HTTTSEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            4568899999999999999998765421    234678999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       112 ~V~~a~~  118 (156)
T 1h2v_Z          112 RTDWDAG  118 (156)
T ss_dssp             EEEEESC
T ss_pred             EEEECCC
Confidence            9998643

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.60  E-value=2.1e-07  Score=66.79  Aligned_cols=65  Identities=18%  Similarity=0.207  Sum_probs=55.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|..|.|......      ..+-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus       116 t~~~l~~~F~~~G~i~~~~i~~d~~~------~~g~~fV~f~~~~~a~~Ai~---------------~lng~~~~g~~i~  174 (213)
T 4f02_A          116 DNKALYDTFSAFGNILSCKVVCDENG------SKGYGFVHFETQEAAERAIE---------------KMNGMLLNDRKVF  174 (213)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEEETTE------EEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             HHHHHHHHHhhcCCeEEEEeeccCCC------CceEEEEEeCCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            36788999999999999999865431      35678999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+...
T Consensus       175 V~~a~~  180 (213)
T 4f02_A          175 VGRFKS  180 (213)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            988753

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=98.59  E-value=2.4e-07  Score=61.90  Aligned_cols=70  Identities=17%  Similarity=0.286  Sum_probs=58.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|......     ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        19 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~F~~~~~A~~Ai~---------------~l~g~~~~g~~l   78 (116)
T 2fy1_A           19 TNEKMLKAVFGKHGPISEVLLIKDRTS-----KSRGFAFITFENPADAKNAAK---------------DMNGKSLHGKAI   78 (116)
T ss_dssp             CCHHHHHHHHHTSSCCSEEEEECSTTT-----TCCCEEEEECSSHHHHHHHHH---------------HCSSCBCSSSBC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            456888989999999999999876521     234578999999999999999               999999999999


Q ss_pred             EEEEeccccc
Q psy2134          88 RAELYDQSLF   97 (104)
Q Consensus        88 ~a~~yd~~~f   97 (104)
                      .+.+-.....
T Consensus        79 ~V~~a~~~~~   88 (116)
T 2fy1_A           79 KVEQAKKPSF   88 (116)
T ss_dssp             EEEECCCSSC
T ss_pred             EEEECCCCCC
Confidence            9998765443

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.59  E-value=2.5e-07  Score=60.54  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC---
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG---   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G---   84 (104)
                      .=++|+++-+++||.|..|.|...           +..||+|.+.++|.+|+.               .|||..+.|   
T Consensus        27 ~t~~~l~~~F~~~G~i~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~~   80 (108)
T 1x4c_A           27 GSWQDLKDHMREAGDVCYADVYRD-----------GTGVVEFVRKEDMTYAVR---------------KLDNTKFRSHEG   80 (108)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEETT-----------TEEEEEESSHHHHHHHHH---------------HSSSEEEECTTS
T ss_pred             CCHHHHHHHHHhcCCEeEEEEecC-----------CEEEEEECCHHHHHHHHH---------------HHCcCCccCCcC
Confidence            346788989999999999999764           358999999999999999               899999999   


Q ss_pred             --eEEEEEEecc
Q psy2134          85 --RMVRAELYDQ   94 (104)
Q Consensus        85 --R~V~a~~yd~   94 (104)
                        +.|.+.+-..
T Consensus        81 ~~~~i~V~~a~~   92 (108)
T 1x4c_A           81 ETAYIRVKVDGP   92 (108)
T ss_dssp             CEEEEEEEESSC
T ss_pred             cceEEEEEeCCC
Confidence              9999987654

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.59  E-value=2.5e-07  Score=65.50  Aligned_cols=64  Identities=13%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~   86 (104)
                      =++++++-+++||.|.+|+|+....        -...||+|.+.++|.+|++               +|||+.+.|  +.
T Consensus        41 te~~L~~lFs~yG~V~~V~i~~~~~--------gfqAFVef~~~~~A~~Ai~---------------~LnG~~i~g~~~~   97 (130)
T 3zzy_A           41 TLDVLHQIFSKFGTVLKIITFTKNN--------QFQALLQYADPVSAQHAKL---------------SLDGQNIYNACCT   97 (130)
T ss_dssp             CHHHHHHHHTTSSCEEEEEEEEETT--------EEEEEEEESCHHHHHHHHH---------------HHTTCEEETTEEE
T ss_pred             CHHHHHHHHhCcCCEEEEEEEcCCC--------CcEEEEEECCHHHHHHHHH---------------HcCCCeecCCCcE
Confidence            3567888899999999999986321        1348999999999999999               999999887  89


Q ss_pred             EEEEEeccc
Q psy2134          87 VRAELYDQS   95 (104)
Q Consensus        87 V~a~~yd~~   95 (104)
                      ++.+|-...
T Consensus        98 LrI~~ak~~  106 (130)
T 3zzy_A           98 LRIDFSKLT  106 (130)
T ss_dssp             EEEEECSCS
T ss_pred             EEEEecCCC
Confidence            999886543

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=98.58  E-value=2.7e-07  Score=59.26  Aligned_cols=68  Identities=18%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC---
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG---   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G---   84 (104)
                      .-++|+++-+++||.|.+|.|...+.     ....+-.||+|.+.++|.+|+.               .|||..+.|   
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~gg~~   86 (105)
T 2dnh_A           27 QSEEDVLRLFQPFGVIDECTVLRGPD-----GSSKGCAFVKFSSHTEAQAAIH---------------ALHGSQTMPGAS   86 (105)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECSS-----SCEEEEEEEEESSHHHHHHHHH---------------HHSSCCCCTTCS
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCC-----CCcCcEEEEEeCCHHHHHHHHH---------------HHcCCccCCCCC
Confidence            34678898999999999999987642     1235679999999999999999               888988888   


Q ss_pred             eEEEEEEeccc
Q psy2134          85 RMVRAELYDQS   95 (104)
Q Consensus        85 R~V~a~~yd~~   95 (104)
                      +.|.+.+-...
T Consensus        87 ~~l~V~~a~~~   97 (105)
T 2dnh_A           87 SSLVVKFADTD   97 (105)
T ss_dssp             SCCEEEESCSS
T ss_pred             ccEEEEECccC
Confidence            99998876543

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.58  E-value=1.4e-07  Score=60.35  Aligned_cols=62  Identities=23%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+          +..||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~~~~~k----------g~afV~f~~~~~a~~a~~---------------~l~g~~~~g~~l   81 (99)
T 2cpj_A           27 ITEEEMRKLFEKYGKAGEVFIHKDK----------GFGFIRLETRTLAEIAKV---------------ELDNMPLRGKQL   81 (99)
T ss_dssp             CCHHHHHHHTSTTCCCSEEEEETTT----------TEEEEECSSSHHHHHHHH---------------HHTTCCBTTBCC
T ss_pred             CCHHHHHHHHhhcCCeEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhCCCEeCCceE
Confidence            3467889899999999999987542          368999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        82 ~v~~a~~   88 (99)
T 2cpj_A           82 RVRFACH   88 (99)
T ss_dssp             EEEESSC
T ss_pred             EEEEcCC
Confidence            9988654

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.58  E-value=2.5e-07  Score=60.27  Aligned_cols=61  Identities=23%  Similarity=0.302  Sum_probs=53.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.+|.|...+          +-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        38 t~~~l~~~F~~~G~i~~v~i~~~~----------g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~   92 (109)
T 1x4g_A           38 TDQLMRQTFSPFGQIMEIRVFPEK----------GYSFVRFSTHESAAHAIV---------------SVNGTTIEGHVVK   92 (109)
T ss_dssp             CHHHHHHHHHHHSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCeEEEEEeCCC----------CEEEEEECCHHHHHHHHH---------------HcCCCEECCcEEE
Confidence            467888889999999999998752          368999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        93 v~~a~~   98 (109)
T 1x4g_A           93 CYWGKE   98 (109)
T ss_dssp             EECCCC
T ss_pred             EEecCC
Confidence            987654

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.57  E-value=1.5e-07  Score=69.22  Aligned_cols=65  Identities=14%  Similarity=0.257  Sum_probs=53.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--e
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--R   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R   85 (104)
                      +=++++++-+++||.|.+|.|+....        -+..||+|.+.++|..|+.               .|||+.+.|  +
T Consensus        58 vted~L~~~Fs~fG~V~~V~i~~k~~--------rgfAFVeF~d~~~A~~Ai~---------------~LnG~~i~g~g~  114 (164)
T 1sjr_A           58 VTLDVLHQIFSKFGTVLKIITFTKNN--------QFQALLQYADPVSAQHAKL---------------SLDGQNIYNACC  114 (164)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEEEESSS--------CEEEEEEESCHHHHHHHHH---------------HSTTBCSSSSCS
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEeCCC--------CCEEEEEECCHHHHHHHHH---------------HhCCCEecCCCc
Confidence            34578888999999999999975321        2568999999999999999               889998854  9


Q ss_pred             EEEEEEeccc
Q psy2134          86 MVRAELYDQS   95 (104)
Q Consensus        86 ~V~a~~yd~~   95 (104)
                      .++.+|-...
T Consensus       115 ~L~V~~Ak~~  124 (164)
T 1sjr_A          115 TLRIDFSKLT  124 (164)
T ss_dssp             CEEEEECSSS
T ss_pred             EEEEEEecCC
Confidence            9998876543

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=98.57  E-value=2.9e-07  Score=59.60  Aligned_cols=59  Identities=19%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|..            +-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        35 ~t~~~L~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   87 (97)
T 2xnq_A           35 VSKEDLFRIFSPYGHIMQINIKN------------AFGFIQFDNPQSVRDAIE---------------XESQEMNFGKKL   87 (97)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEECS------------SEEEEEESSHHHHHHHHH---------------HHTTSEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            44678899999999999988841            358999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        88 ~V~~a~   93 (97)
T 2xnq_A           88 ILEVSS   93 (97)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            998753

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=98.56  E-value=1.1e-07  Score=60.16  Aligned_cols=63  Identities=17%  Similarity=0.255  Sum_probs=51.2

Q ss_pred             hhHHH----HHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134          10 YNEKQ----SDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus        10 ~~ev~----~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .+|++    +-+++||.|.+|.|.....       ..+..||+|.+.++|..|+.               .|||..+.|+
T Consensus        22 ~~~l~~~l~~~f~~~G~i~~v~i~~~~~-------~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~   79 (97)
T 1nu4_A           22 KDELKKSLHAIFSRFGQILDILVSRSLK-------MRGQAFVIFKEVSSATNALR---------------SMQGFPFYDK   79 (97)
T ss_dssp             HHHHHHHHHHHHGGGSCEEEEECCHHHH-------HTTCEEEEESSHHHHHHHHH---------------HHTTCEETTE
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEEcCCC-------cCcEEEEEeCCHHHHHHHHH---------------HhCCCEECCc
Confidence            45555    8899999999988863211       12458999999999999999               9999999999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .+.+.+-..
T Consensus        80 ~l~v~~a~~   88 (97)
T 1nu4_A           80 PMRIQYAKT   88 (97)
T ss_dssp             ECEEEECSS
T ss_pred             EEEEEEccC
Confidence            999987654

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=98.56  E-value=2.6e-07  Score=62.15  Aligned_cols=65  Identities=17%  Similarity=0.125  Sum_probs=51.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC---C
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA---G   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~---G   84 (104)
                      .-.+|+++.+++||.|.+|.|......     ...+-.||+|.+.++|.+|+.               .|||+.+.   |
T Consensus       107 ~t~~~l~~~F~~~G~i~~v~~~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~~  166 (175)
T 3nmr_A          107 CTENDIRVMFSSFGQIEECRILRGPDG-----LSRGCAFVTFTTRAMAQTAIK---------------AMHQAQTMEGCS  166 (175)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTS-----CEEEEEEEEESSHHHHHHHHH---------------HHTTSCCCTTCS
T ss_pred             CCHHHHHHHHHhCCCEEEEEEEECCCC-----CEEEEEEEEECCHHHHHHHHH---------------HhcCCcccCCCC
Confidence            346889999999999999999876431     234668999999999999999               77777555   4


Q ss_pred             eEEEEEEe
Q psy2134          85 RMVRAELY   92 (104)
Q Consensus        85 R~V~a~~y   92 (104)
                      |.|.+.|-
T Consensus       167 ~~l~V~~a  174 (175)
T 3nmr_A          167 SPMVVKFA  174 (175)
T ss_dssp             SCCEEEEC
T ss_pred             CCeEEEec
Confidence            88888764

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.56  E-value=2.3e-07  Score=59.12  Aligned_cols=62  Identities=10%  Similarity=0.196  Sum_probs=52.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC--Ce
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA--GR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~--GR   85 (104)
                      .=++|+++-+++||.|.+|.|...          .+..||+|.+.++|.+|+.               .|||..+.  |+
T Consensus        29 ~t~~~l~~~F~~~G~v~~v~~~~~----------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~~g~   83 (97)
T 1why_A           29 TSLAALAREFDRFGSIRTIDHVKG----------DSFAYIQYESLDAAQAACA---------------KMRGFPLGGPDR   83 (97)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEECSS----------SCCEEEEESSHHHHHHHHH---------------HHTTCBCSSSSC
T ss_pred             CCHHHHHHHHHhcCCeeEEEEeCC----------CCEEEEEECCHHHHHHHHH---------------HHCCCEeCCCCc
Confidence            346788989999999999888753          1358999999999999999               99999999  99


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .+.+.+-..
T Consensus        84 ~l~V~~a~~   92 (97)
T 1why_A           84 RLRVDFAKS   92 (97)
T ss_dssp             BCEEEECCC
T ss_pred             EEEEEECCC
Confidence            999987643

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=98.56  E-value=6.5e-07  Score=59.53  Aligned_cols=67  Identities=18%  Similarity=0.253  Sum_probs=56.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+.+     ...+-.||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        12 ~t~~~l~~~f~~~G~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~i   71 (166)
T 3md3_A           12 ITEDILKQYFQVGGPIANIKIMIDKNN-----KNVNYAFVEYHQSHDANIALQ---------------TLNGKQIENNIV   71 (166)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEECCCC------CCEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC-----CCCCEEEEEeCCHHHHHHHHH---------------HcCCCccCCCee
Confidence            346788999999999999999876542     235679999999999999999               899999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ...+...
T Consensus        72 ~v~~~~~   78 (166)
T 3md3_A           72 KINWAFQ   78 (166)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9987644

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.56  E-value=3e-07  Score=59.39  Aligned_cols=69  Identities=14%  Similarity=0.148  Sum_probs=56.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc------Cce
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN------GRF   81 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln------GR~   81 (104)
                      .-++|+++-+++||.|..|.|...+.+.    ...+-.||+|.+.++|.+|+.               .||      |..
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~~~~~~~~~~~~   87 (111)
T 1x4h_A           27 SEEEALGEVLQQFGDLKYVRVVLHPDTE----HSKGCAFAQFMTQEAAQKCLA---------------AASLEAEGGGLK   87 (111)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCBCSSSC----CBCSEEEEEESSHHHHHHHHH---------------HHCTTTTTCCEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----CCccEEEEEECCHHHHHHHHH---------------HhccccccCCcE
Confidence            4467899999999999999998754421    124568999999999999999               888      999


Q ss_pred             eCCeEEEEEEeccc
Q psy2134          82 FAGRMVRAELYDQS   95 (104)
Q Consensus        82 F~GR~V~a~~yd~~   95 (104)
                      +.|+.|.+.+....
T Consensus        88 ~~g~~l~v~~a~~~  101 (111)
T 1x4h_A           88 LDGRQLKVDLAVTR  101 (111)
T ss_dssp             SSSCEEEEECCCCC
T ss_pred             EcCEEEEEEECCCC
Confidence            99999999876543

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.55  E-value=3.4e-07  Score=60.06  Aligned_cols=66  Identities=21%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    .-.+-.||+|.+.++|.+|+.               .||| .|.|+.|
T Consensus        29 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~---------------~~~~-~~~g~~l   88 (116)
T 2cqd_A           29 TTDASLRKYFEGFGDIEEAVVITDRQTG----KSRGYGFVTMADRAAAERACK---------------DPNP-IIDGRKA   88 (116)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEESCCSSSC----CCCSEEEEEESSHHHHHHHHT---------------CSSC-EETTEEC
T ss_pred             CCHHHHHHHHHhCCCeeEEEEEEcCCCC----ccceEEEEEECCHHHHHHHHH---------------hCCC-cCCCEEE
Confidence            3467899999999999999998765421    123568999999999999999               9998 8999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        89 ~V~~a~   94 (116)
T 2cqd_A           89 NVNLAY   94 (116)
T ss_dssp             EEEEST
T ss_pred             EEEEcc
Confidence            999863

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=98.55  E-value=1.4e-07  Score=65.37  Aligned_cols=64  Identities=14%  Similarity=0.201  Sum_probs=51.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      |.+.+.+-+++||.|++|.|.....+       .|..||+|.+.++|..|+.               .|||..+.||.|.
T Consensus        46 L~~~L~~~F~~~G~I~~v~i~~~~~~-------rG~aFV~F~~~~~A~~Ai~---------------~lng~~l~gr~l~  103 (127)
T 2a3j_A           46 LQALLYALASSQGDILDIVVDLSDDN-------SGKAYIVFATQESAQAFVE---------------AFQGYPFQGNPLV  103 (127)
T ss_dssp             HHHHHHHHHHHHSCEEEEEECCCCSS-------CCCEEEEESSHHHHHHHHH---------------HSTTCCCTTSCCE
T ss_pred             HHHHHHHHhccCCCeEEEEeccCCCc-------CCEEEEEECCHHHHHHHHH---------------HHCCCEeCCCEEE
Confidence            44445566899999999888653221       3468999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      ..+-..
T Consensus       104 V~~a~~  109 (127)
T 2a3j_A          104 ITFSET  109 (127)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            987543

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=98.55  E-value=8.7e-08  Score=60.73  Aligned_cols=68  Identities=9%  Similarity=0.102  Sum_probs=54.1

Q ss_pred             eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .-++|+++-+++||  .|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||
T Consensus        13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g----~~kG~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr   73 (90)
T 3p5t_L           13 TTDEDLTEAVHSLGVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMD---------------LLPKRELHGQ   73 (90)
T ss_dssp             CCHHHHHHHHHTTTCCCCCCEEEEECTTTC----CEEEEEEECC-CHHHHHHHHH---------------HGGGSCSSSC
T ss_pred             CCHHHHHHHHHHhCCCceEEEEEEecCCCC----ccCcEEEEEECCHHHHHHHHH---------------HcCCCeeCCE
Confidence            34678999999999  99999998765421    234678999999999999999               9999999999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|.+.+...
T Consensus        74 ~i~V~~~~~   82 (90)
T 3p5t_L           74 NPVVTPSNK   82 (90)
T ss_dssp             CCEECCC--
T ss_pred             EEEEEECCC
Confidence            999876543

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=98.55  E-value=4.8e-07  Score=58.35  Aligned_cols=61  Identities=18%  Similarity=0.291  Sum_probs=53.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...            ..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        23 ~t~~~l~~~F~~~G~i~~v~~~~~------------~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   75 (103)
T 2dgu_A           23 VTEEILEKAFSQFGKLERVKKLKD------------YAFIHFDERDGAVKAME---------------EMNGKDLEGENI   75 (103)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEECSS------------CEEEEESSHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEECC------------EEEEEeCCHHHHHHHHH---------------HHCCCccCCCEE
Confidence            346788888999999999888742            47999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+....
T Consensus        76 ~v~~a~~~   83 (103)
T 2dgu_A           76 EIVFAKPP   83 (103)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99987543

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=98.54  E-value=2.1e-07  Score=61.60  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=52.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|..            +-.||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        43 ~t~~~L~~~F~~~G~i~~v~i~k------------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   95 (108)
T 2jvo_A           43 VQESELNEIFGPFGPMKEVKILN------------GFAFVEFEEAESAAKAIE---------------EVHGKSFANQPL   95 (108)
T ss_dssp             CCHHHHHHHHTTTSCCCEEEEET------------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence            34678999999999999999871            358999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        96 ~V~~a~~  102 (108)
T 2jvo_A           96 EVVYSKL  102 (108)
T ss_dssp             EEESCSC
T ss_pred             EEEEecC
Confidence            9987644

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.54  E-value=3.1e-07  Score=58.39  Aligned_cols=68  Identities=18%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCcee-EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVE-KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~-kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-++|+++-+++||.|. +|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.
T Consensus        21 ~t~~~l~~~F~~~G~i~~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~   81 (99)
T 2div_A           21 MDENFISRAFATMGETVMSVKIIRNRLTG----IPAGYCFVEFADLATAEKCLH---------------KINGKPLPGAT   81 (99)
T ss_dssp             CCHHHHHHHHHHTTCCCCEEEEEECSSSC----CEEEEEEEECSCHHHHHHHHH---------------TTTTSEESSCS
T ss_pred             CCHHHHHHHHHHhCCcceEEEEeecCCCC----CcCCEEEEEeCCHHHHHHHHH---------------HHcCCccCCCC
Confidence            45688999999999999 99998765321    234678999999999999999               99999999998


Q ss_pred             ----EEEEEecc
Q psy2134          87 ----VRAELYDQ   94 (104)
Q Consensus        87 ----V~a~~yd~   94 (104)
                          ++..+-..
T Consensus        82 ~~~~l~v~~a~~   93 (99)
T 2div_A           82 PAKRFKLNYATY   93 (99)
T ss_dssp             SCEECCEEETTC
T ss_pred             cceeEEEeecCC
Confidence                88776543

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=98.54  E-value=1.9e-07  Score=63.86  Aligned_cols=68  Identities=24%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        58 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~---------------~lng~~i~g~~l  118 (129)
T 2kxn_B           58 TTERDLREVFSKYGPIADVSIVYDQQSR----RSRGFAFVYFENVDDAKEAKE---------------RANGMELDGRRI  118 (129)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEECCSSSS----CCCCEEEEEESCHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            3467899999999999999998764321    234568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       119 ~V~~a~~  125 (129)
T 2kxn_B          119 RVDFSIT  125 (129)
T ss_dssp             EESCCSS
T ss_pred             EEEEecC
Confidence            9876543

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.53  E-value=3.6e-07  Score=61.09  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=54.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc--eeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR--FFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR--~F~GR   85 (104)
                      .-++|+++-+++||.|.+|.|...+          +..||+|.+.++|.+|+.               .|||.  .+.||
T Consensus        27 ~te~~L~~~F~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~i~Gr   81 (104)
T 1wex_A           27 VVEADLVEALEKFGTICYVMMMPFK----------RQALVEFENIDSAKECVT---------------FAADVPVYIAGQ   81 (104)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCCBSSSS
T ss_pred             CCHHHHHHHHHhCCCEEEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCE
Confidence            3468899999999999999887532          358999999999999999               77665  48999


Q ss_pred             EEEEEEecccccc
Q psy2134          86 MVRAELYDQSLFD   98 (104)
Q Consensus        86 ~V~a~~yd~~~f~   98 (104)
                      .|...|-......
T Consensus        82 ~l~V~~a~~~~~~   94 (104)
T 1wex_A           82 QAFFNYSTSKRIT   94 (104)
T ss_dssp             BCEEEECSSSSCC
T ss_pred             EEEEEEccCcccc
Confidence            9999987655443

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=98.53  E-value=3.2e-07  Score=62.78  Aligned_cols=69  Identities=28%  Similarity=0.358  Sum_probs=57.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|..++.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||.|
T Consensus        82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l  142 (158)
T 2kn4_A           82 TSPDTLRRVFEKYGRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMD---------------AMDGAVLDGREL  142 (158)
T ss_dssp             CCHHHHHHHHHHHSCEEEEECCCCSSCT----TSCCEEEEEESBHHHHHHHHH---------------HSTTEESSSSEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeecCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            4578899999999999999988764321    234568999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus       143 ~v~~a~~~  150 (158)
T 2kn4_A          143 RVQMARYG  150 (158)
T ss_dssp             EEEEECCS
T ss_pred             EEEECCCC
Confidence            99987543

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.52  E-value=1.7e-07  Score=59.57  Aligned_cols=66  Identities=23%  Similarity=0.122  Sum_probs=53.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|..+.|......    ..-.+..||+|.+.++|.+|+.               .|||..+.||.|
T Consensus        27 ~t~~~l~~~F~~~G~v~~~~~~~~~~~----g~~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l   87 (98)
T 2cqp_A           27 VSIDEILDFFYGYQVIPGSVCLKYNEK----GMPTGEAMVAFESRDEATAAVI---------------DLNDRPIGSRKV   87 (98)
T ss_dssp             CCHHHHHHHTTTSCCCTTTCEEEECSS----SCEEEEEEEEESCHHHHHHHHH---------------HTTTCEETTEEC
T ss_pred             CCHHHHHHHHHHcCCccceEEEEECCC----CCeeeEEEEEECCHHHHHHHHH---------------HhCCCeeCCeEE
Confidence            346788989999999987666544332    1234679999999999999999               999999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      ...+-
T Consensus        88 ~V~~a   92 (98)
T 2cqp_A           88 KLVLG   92 (98)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            99874

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=5.6e-07  Score=57.51  Aligned_cols=61  Identities=26%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             eehhHHHHHhhhC--CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAY--GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~ky--G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .-.+|+++-+++|  |.|.+|.+..            +-.||+|.+.++|.+|+.               .|||..+.|+
T Consensus        27 ~t~~~l~~~F~~~g~g~v~~~~~~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~   79 (99)
T 2cpd_A           27 TSEEMIEKEFNNIKPGAVERVKKIR------------DYAFVHFSNREDAVEAMK---------------ALNGKVLDGS   79 (99)
T ss_dssp             CCHHHHHHHHHTTSTTCEEEEEECS------------SEEEEEESSHHHHHHHHH---------------HHSSEEETTE
T ss_pred             CCHHHHHHHHHhcCCcceEEEEEeC------------CeEEEEeCCHHHHHHHHH---------------HhCCCEeCCc
Confidence            3467889899999  9999987753            258999999999999999               9999999999


Q ss_pred             EEEEEEeccc
Q psy2134          86 MVRAELYDQS   95 (104)
Q Consensus        86 ~V~a~~yd~~   95 (104)
                      .|.+.+-...
T Consensus        80 ~l~v~~a~~~   89 (99)
T 2cpd_A           80 PIEVTLAKPV   89 (99)
T ss_dssp             EEEEECCCCC
T ss_pred             EEEEEECCCC
Confidence            9999976543

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.51  E-value=2.7e-07  Score=60.14  Aligned_cols=68  Identities=21%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCcee--------EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134           8 VIYNEKQSDDEAYGQVE--------KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG   79 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~--------kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG   79 (104)
                      .-.+|+++-+++||.|.        +|.|+..+...    ...+-.||+|.+.++|.+|+.               .|||
T Consensus        27 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g   87 (113)
T 2cpe_A           27 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETG----KPKGDATVSYEDPPTAKAAVE---------------WFDG   87 (113)
T ss_dssp             CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTC----SBCSEEEEEBSSHHHHHHHHH---------------HHTT
T ss_pred             CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCC----CeeeEEEEEECCHHHHHHHHH---------------HcCC
Confidence            34678999999999998        68888764321    224568999999999999999               9999


Q ss_pred             ceeCCeEEEEEEecc
Q psy2134          80 RFFAGRMVRAELYDQ   94 (104)
Q Consensus        80 R~F~GR~V~a~~yd~   94 (104)
                      ..|.|+.|.+.+-..
T Consensus        88 ~~~~g~~l~V~~a~~  102 (113)
T 2cpe_A           88 KDFQGSKLKVSLARK  102 (113)
T ss_dssp             CEETTEECEEECSSC
T ss_pred             CccCCCEEEEEECCC
Confidence            999999999987644

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=98.51  E-value=1e-06  Score=58.65  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.|+.+.
T Consensus        15 ~~~~l~~~f~~~G~i~~v~~~~~~~~~----~~~g~afV~f~~~~~A~~a~~---------------~l~~~~~~g~~l~   75 (167)
T 1fxl_A           15 TQEEFRSLFGSIGEIESCKLVRDKITG----QSLGYGFVNYIDPKDAEKAIN---------------TLNGLRLQTKTIK   75 (167)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCeEEEEEEeCCCCC----cceeEEEEEECCHHHHHHHHH---------------HcCCCccCCceEE
Confidence            467888899999999999998765321    234679999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        76 v~~~~~   81 (167)
T 1fxl_A           76 VSYARP   81 (167)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            987654

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=98.51  E-value=1.1e-07  Score=60.85  Aligned_cols=63  Identities=29%  Similarity=0.310  Sum_probs=54.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+         .+-.||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        12 ~t~~~l~~~F~~~G~i~~v~i~~~~---------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   67 (101)
T 2hvz_A           12 AGKGELERAFSYYGPLRTVWIARNP---------PGFAFVEFEDPRDAEDAVR---------------GLDGKVICGSRV   67 (101)
T ss_dssp             CSHHHHHHHHHHHCCCSEEEEESSS---------SSEEEEECSSHHHHHHHHH---------------HHHHSCSSSCCC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeeCC---------CCEEEEEECCHHHHHHHHH---------------HHCCCeECCcEE
Confidence            3467889999999999999998751         2368999999999999999               899999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        68 ~V~~a~~   74 (101)
T 2hvz_A           68 RVELSTG   74 (101)
T ss_dssp             EEEESSS
T ss_pred             EEEEccC
Confidence            9998754

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=98.51  E-value=2.2e-07  Score=59.45  Aligned_cols=60  Identities=20%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+          +-.||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        39 ~~~~~l~~~f~~~G~i~~~~~~~~~----------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l   93 (101)
T 2la4_A           39 ATEADLIPLFQNFGFILDFKHYPEK----------GCCFIKYDTHEQAAVCIV---------------ALANFPFQGRNL   93 (101)
T ss_dssp             CCHHHHHHHHHTTSCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             cCHHHHHHHHHhCCCEEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEE
Confidence            4467889999999999999997422          358999999999999999               999999999998


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      .+.+-
T Consensus        94 ~V~~a   98 (101)
T 2la4_A           94 RTGWG   98 (101)
T ss_dssp             CCCBC
T ss_pred             EEEec
Confidence            87653

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=98.51  E-value=2.3e-07  Score=59.66  Aligned_cols=69  Identities=13%  Similarity=0.174  Sum_probs=55.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee---CC
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF---AG   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F---~G   84 (104)
                      .=++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+   .|
T Consensus        25 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~~~g   85 (106)
T 2dgp_A           25 LDEKDLKPLFEEFGKIYELTVLKDRFTG----MHKGCAFLTYCERESALKAQS---------------ALHEQKTLPGMN   85 (106)
T ss_dssp             CCHHHHHHHHHHHSCCCEEECCCCSSSC----SCCSEEEEEESSHHHHHHHHH---------------HHTTTCCCTTCS
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEecCCCC----CcceEEEEEECCHHHHHHHHH---------------HhcCCcccCCCC
Confidence            3467899999999999999987754321    123568999999999999999               8888887   88


Q ss_pred             eEEEEEEeccc
Q psy2134          85 RMVRAELYDQS   95 (104)
Q Consensus        85 R~V~a~~yd~~   95 (104)
                      +.|.+.+-...
T Consensus        86 ~~l~v~~a~~~   96 (106)
T 2dgp_A           86 RPIQVKPADSE   96 (106)
T ss_dssp             SCCEEEECCCC
T ss_pred             ceEEEEECCcc
Confidence            99999887543

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=6.5e-07  Score=56.33  Aligned_cols=61  Identities=25%  Similarity=0.157  Sum_probs=52.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|..            +-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        20 ~t~~~l~~~F~~~G~i~~v~~~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   72 (90)
T 2dnq_A           20 ATEQEIRSLFEQYGKVLECDIIK------------NYGFVHIEDKTAAEDAIR---------------NLHHYKLHGVNI   72 (90)
T ss_dssp             CCHHHHHHHHHTSSCEEEEEEET------------TEEEEEESSHHHHHHHHH---------------HHTTCBCSSCBC
T ss_pred             CCHHHHHHHHHhCCCEEEEEEEC------------CEEEEEECCHHHHHHHHH---------------HhcCCccCCcEE
Confidence            34678898999999999999872            258999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+....
T Consensus        73 ~v~~a~~~   80 (90)
T 2dnq_A           73 NVEASKNK   80 (90)
T ss_dssp             EEECSSCC
T ss_pred             EEEECCCC
Confidence            99986543

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.48  E-value=1.9e-07  Score=65.17  Aligned_cols=63  Identities=13%  Similarity=0.120  Sum_probs=53.1

Q ss_pred             eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-Ce
Q psy2134           8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR   85 (104)
                      .-.+++++.+++|| .|.+|.|....         .+..||+|.+.++|.+|+.               .|||+.++ |+
T Consensus       132 ~~~~~l~~~f~~~G~~v~~v~i~~~~---------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~  187 (198)
T 1qm9_A          132 VSEEDLKVLFSSNGGVVKGFKFFQKD---------RKMALIQMGSVEEAVQALI---------------DLHNHDLGENH  187 (198)
T ss_dssp             CCHHHHHHHHHHTTSCCCEEEESSTT---------SSCEEEECSSHHHHHHHHH---------------HHTSSCCSSCC
T ss_pred             CCHHHHHHHHHHcCCCceEEEEEeCC---------CcEEEEEeCCHHHHHHHHH---------------HhcCCccCCCC
Confidence            34688999999999 99999986532         1358999999999999999               89999999 99


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|.+.|-..
T Consensus       188 ~l~v~~a~~  196 (198)
T 1qm9_A          188 HLRVSFSKS  196 (198)
T ss_dssp             SCCEEEECC
T ss_pred             eEEEEeecc
Confidence            999887543

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.47  E-value=5.7e-07  Score=62.72  Aligned_cols=62  Identities=23%  Similarity=0.293  Sum_probs=50.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~   86 (104)
                      =++++++-+++||.|.+|+|+.. .       |. ..||+|++.++|..|+.               +|||+.+.|  +.
T Consensus        38 t~~~L~~~Fs~yG~V~~v~i~~~-~-------Gf-~aFVef~~~~~A~~A~~---------------~LnG~~i~g~~~~   93 (124)
T 2e5i_A           38 TVDVLYTVCNPVGKVQRIVIFKR-N-------GI-QAMVEFESVLCAQKAKA---------------ALNGADIYAGCCT   93 (124)
T ss_dssp             CHHHHHHHHTTTSCEEEEEEEES-S-------SE-EEEEEESSHHHHHHHHH---------------HHTTCCCBTTBSE
T ss_pred             CHHHHHHHHHhcCCEEEEEEEeC-C-------CC-EEEEEECCHHHHHHHHH---------------HhCCCEecCCCeE
Confidence            35788999999999999999752 1       21 48999999999999999               889988877  68


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      ++..|-..
T Consensus        94 l~V~~Ak~  101 (124)
T 2e5i_A           94 LKIEYARP  101 (124)
T ss_dssp             EEEECCSC
T ss_pred             EEEEEecC
Confidence            88887543

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.47  E-value=1.4e-06  Score=58.05  Aligned_cols=67  Identities=10%  Similarity=0.144  Sum_probs=54.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh--cCceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL--NGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~GR   85 (104)
                      .-++|+++-++.||.|.+|.|...+          +-.||+|.+.++|..|+.               .|  +|..+.||
T Consensus        27 ~te~~L~~~F~~fG~v~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~~~Gr   81 (101)
T 2cq1_A           27 VTETEVIALGLPFGKVTNILMLKGK----------NQAFLELATEEAAITMVN---------------YYSAVTPHLRNQ   81 (101)
T ss_dssp             CCHHHHHHTTTTTSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCCEETTE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEECCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCc
Confidence            3467889899999999999887642          358999999999999999               65  46789999


Q ss_pred             EEEEEEeccccccc
Q psy2134          86 MVRAELYDQSLFDH   99 (104)
Q Consensus        86 ~V~a~~yd~~~f~~   99 (104)
                      .|.+.|-.......
T Consensus        82 ~l~V~~a~~~~~~~   95 (101)
T 2cq1_A           82 PIYIQYSNHKELKT   95 (101)
T ss_dssp             ECEEEECSCSSCCC
T ss_pred             EEEEEEcCcccCcC
Confidence            99999876655443

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=98.47  E-value=1.7e-06  Score=53.75  Aligned_cols=64  Identities=14%  Similarity=0.159  Sum_probs=51.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++++++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               . +|..+.|+.|
T Consensus        23 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~-~~~~~~g~~i   82 (87)
T 3s7r_A           23 TSKKDLKDYFTKFGEVVDCTIKMDPNTG----RSRGFGFILFKDAASVEKVLD---------------Q-KEHRLDGRVI   82 (87)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECTTTC----CEEEEEEEEESSTHHHHHHHH---------------S-SCEEETTEEE
T ss_pred             CCHHHHHHHHHhCCCEEEEEEeecCCCC----ccccEEEEEECCHHHHHHHHH---------------h-CCCEECCEEE
Confidence            3467889999999999999998765421    234678999999999999998               5 6677899998


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ....
T Consensus        83 ~v~~   86 (87)
T 3s7r_A           83 DPKK   86 (87)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8753

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=98.46  E-value=1.1e-06  Score=61.34  Aligned_cols=67  Identities=18%  Similarity=0.254  Sum_probs=56.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++-+++||.|..|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..|.|+.|
T Consensus        84 ~t~~~L~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l  144 (165)
T 1rk8_A           84 AQEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKE---------------ALNGAEIMGQTI  144 (165)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTS----SEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHhhcCCCEEEEEEEecCCCC----cEeeEEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            3467889899999999999998764421    234678999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus       145 ~V~~a~  150 (165)
T 1rk8_A          145 QVDWCF  150 (165)
T ss_dssp             EEEESE
T ss_pred             EEEEec
Confidence            998754

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=98.45  E-value=3e-07  Score=59.08  Aligned_cols=68  Identities=22%  Similarity=0.225  Sum_probs=53.4

Q ss_pred             eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc-CceeCCe
Q psy2134           8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN-GRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln-GR~F~GR   85 (104)
                      .=++|+++-+++|| +|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|+ |-.+.||
T Consensus        13 ~te~~l~~~F~~~G~~v~~v~i~~d~~t~----~~rg~aFV~F~~~~~A~~Ai~---------------~~~~~~~~~gr   73 (91)
T 2lxi_A           13 ATEDDIRGQLQSHGVQAREVRLMRNKSSG----QSRGFAFVEFSHLQDATRWME---------------ANQHSLNILGQ   73 (91)
T ss_dssp             CCHHHHHHHHHHHTCCCSBCCSSSCSSSC----CCSSEEEEECSSHHHHHHHHH---------------TTTTEEEETTE
T ss_pred             CCHHHHHHHHHHhCCEeEEEEEEecCCCC----CcCceEEEEecCHHHHHHHHH---------------hcCCCeEECCE
Confidence            34688999999999 89998887654421    123468999999999999999               774 5579999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|...+-.+
T Consensus        74 ~i~V~~a~~   82 (91)
T 2lxi_A           74 KVSMHYSDP   82 (91)
T ss_dssp             EEEEECCCS
T ss_pred             EEEEEEcCC
Confidence            999987644

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=98.45  E-value=1.4e-06  Score=54.11  Aligned_cols=67  Identities=19%  Similarity=0.256  Sum_probs=52.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~----------------~~g~~~~g~~l   77 (89)
T 3ucg_A           18 ATAEELEAHFHGCGSVNRVTILCDKFSG----HPKGFAYIEFSDKESVRTSLA----------------LDESLFRGRQI   77 (89)
T ss_dssp             CCHHHHHHHHGGGCCEEEEEEEESCSSS----SCCEEEEEEESSTHHHHHHGG----------------GTTCEETTEEC
T ss_pred             CCHHHHHHHHHhCCCEEEEEEEecCCCC----CcceEEEEEECCHHHHHHHHh----------------cCCCEECCcEE
Confidence            3467899999999999999998764321    234678999999999999884                56777889999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        78 ~V~~a~~   84 (89)
T 3ucg_A           78 KVIPKRT   84 (89)
T ss_dssp             EEEETTT
T ss_pred             EEEEccC
Confidence            9886543

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.45  E-value=1.3e-07  Score=58.67  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=49.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||.+
T Consensus        17 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~~   77 (85)
T 1x4e_A           17 TTDQDLVKLCQPYGKIVSTKAILDKTTN----KCKGYGFVDFDSPSAAQKAVT---------------ALKASGVQAQMA   77 (85)
T ss_dssp             CCHHHHHTTSTTTSCEEEEEEECCSSSC----SCCSEEEEEESCHHHHHHHHH---------------HHHHHTCCEESC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH---------------HhcCCeEeeEEE
Confidence            3467888889999999999998765421    123468999999999999999               788888888877


Q ss_pred             EE
Q psy2134          88 RA   89 (104)
Q Consensus        88 ~a   89 (104)
                      +.
T Consensus        78 ~~   79 (85)
T 1x4e_A           78 KQ   79 (85)
T ss_dssp             CS
T ss_pred             ee
Confidence            54

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.45  E-value=1.3e-06  Score=60.10  Aligned_cols=67  Identities=15%  Similarity=0.110  Sum_probs=54.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|......    ....+..||+|.+.++|.+|+.               . ||+.+.|+.|
T Consensus       116 ~t~~~l~~~F~~~G~i~~v~i~~~~~~----g~~~g~afV~F~~~~~A~~A~~---------------~-~~~~~~G~~i  175 (196)
T 1l3k_A          116 TEEHHLRDYFEQYGKIEVIEIMTDRGS----GKKRGFAFVTFDDHDSVDKIVI---------------Q-KYHTVNGHNC  175 (196)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEEEECTTT----CCEEEEEEEEESSHHHHHHHHH---------------C-SCCEETTEEC
T ss_pred             CCHHHHHHHHhcCCCeEEEEEeecCCC----CCccceEEEEECCHHHHHHHHH---------------h-CCcEECCEEE
Confidence            346789999999999999999876432    1235678999999999999999               7 7999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ...+...
T Consensus       176 ~v~~a~~  182 (196)
T 1l3k_A          176 EVRKALS  182 (196)
T ss_dssp             EEEECC-
T ss_pred             EEEecCC
Confidence            9987644

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=98.44  E-value=2.5e-07  Score=59.22  Aligned_cols=60  Identities=18%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|..            +-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        23 ~t~~~l~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   75 (96)
T 2kvi_A           23 VSKEDLFRIFSPYGHIMQINIKN------------AFGFIQFDNPQSVRDAIE---------------CESQEMNFGKKL   75 (96)
T ss_dssp             CCHHHHHHHHTTTCCCCEEEEET------------TEEEEEESCHHHHHHHHH---------------HHTCSSCBTTTB
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCeeCCcEE
Confidence            44678899999999999998852            358999999999999999               899999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+++-..
T Consensus        76 ~V~~a~~   82 (96)
T 2kvi_A           76 ILEVSSS   82 (96)
T ss_dssp             CEEEEEC
T ss_pred             EEEEcCc
Confidence            9887643

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=98.44  E-value=9.4e-07  Score=59.99  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce--eCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF--FAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~--F~GR   85 (104)
                      .-++|+++-++.||+|.+|.|...+          +-.||+|++.++|..|++               .|||..  +.||
T Consensus        33 ~te~~L~~lF~~fG~V~~v~i~~~k----------g~AFVef~~~~~A~~Av~---------------~ln~~~~~i~Gr   87 (100)
T 3r27_A           33 VVEADLVEALQEFGPISYVVVMPKK----------RQALVEFEDVLGACNAVN---------------YAADNQIYIAGH   87 (100)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHHHSCEEETTE
T ss_pred             CCHHHHHHHHhccCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HhcCCCceeCCc
Confidence            3467899999999999999987532          358999999999999999               888874  7899


Q ss_pred             EEEEEEec
Q psy2134          86 MVRAELYD   93 (104)
Q Consensus        86 ~V~a~~yd   93 (104)
                      .|...|-.
T Consensus        88 ~i~V~~S~   95 (100)
T 3r27_A           88 PAFVNYST   95 (100)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecc
Confidence            99998754

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.43  E-value=5.2e-07  Score=60.70  Aligned_cols=60  Identities=20%  Similarity=0.297  Sum_probs=50.2

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc--eeCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR--FFAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR--~F~GR~   86 (104)
                      =++|+++-++.||.|.+|.|...+          +-.||+|++.++|..|+.               .|||.  .+.||.
T Consensus        29 te~dL~~lF~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~~~Gr~   83 (102)
T 1x4d_A           29 LRYQLLQLVEPFGVISNHLILNKI----------NEAFIEMATTEDAQAAVD---------------YYTTTPALVFGKP   83 (102)
T ss_dssp             HHHHHHTTTGGGSCEEEEEECSSS----------SCEEEEESSHHHHHHHHH---------------HHHHSCCEETTEE
T ss_pred             CHHHHHHHHHhcCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HHcCCCceECCcE
Confidence            357888889999999999987543          237999999999999999               88764  599999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |...+-.
T Consensus        84 l~V~~a~   90 (102)
T 1x4d_A           84 VRVHLSQ   90 (102)
T ss_dssp             CEEEEEC
T ss_pred             EEEEECC
Confidence            9998764

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=98.43  E-value=1.6e-07  Score=58.78  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=53.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.+ |.+|+.               .|||..+.|+.|
T Consensus        13 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~-a~~a~~---------------~l~g~~~~g~~l   72 (90)
T 2ki2_A           13 ATSEQVKELFSQFGKVFNVKLIYDRETK----KPKGFGFVEMQEES-VSEAIA---------------KLDNTDFMGRTI   72 (90)
T ss_dssp             SSHHHHTTTHHHHTCCSEEEECCCSSSC----CCCEEEEEEECTTH-HHHHHH---------------TSCSSCCSSSSC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEEcCCCC----CcceEEEEEECCHH-HHHHHH---------------HhCCCEECCeEE
Confidence            3457788888999999999998765421    23467899999999 999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        73 ~V~~a~~   79 (90)
T 2ki2_A           73 RVTEANP   79 (90)
T ss_dssp             SEEEC--
T ss_pred             EEEEcCC
Confidence            9887543

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=98.43  E-value=3.7e-07  Score=59.51  Aligned_cols=60  Identities=23%  Similarity=0.295  Sum_probs=52.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|..            +-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        40 ~t~~~l~~~F~~~G~v~~v~i~~------------g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   92 (110)
T 1wf1_A           40 VKKSDVETIFSKYGRVAGCSVHK------------GYAFVQYSNERHARAAVL---------------GENGRVLAGQTL   92 (110)
T ss_dssp             CCHHHHHHHHGGGSCCSEEEEET------------TEEEEECSSSHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeC------------CEEEEEECCHHHHHHHHH---------------HcCCCEECCeEE
Confidence            34678898999999999998821            358999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        93 ~V~~a~~   99 (110)
T 1wf1_A           93 DINMAGE   99 (110)
T ss_dssp             CEEESCC
T ss_pred             EEEECCC
Confidence            9998753

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.43  E-value=7.5e-07  Score=61.72  Aligned_cols=62  Identities=18%  Similarity=0.179  Sum_probs=51.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-----
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF-----   82 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F-----   82 (104)
                      .-++++++.+++||.|.+|.|+..          .+-.||+|++.++|.+|+.               .|||+.+     
T Consensus        39 ~te~~L~~~F~~fG~v~~v~i~~~----------rgfaFV~f~~~~~A~~Ai~---------------~lnG~~~~~~lg   93 (114)
T 2cq2_A           39 VSRNQLLPVLEKCGLVDALLMPPN----------KPYSFARYRTTEESKRAYV---------------TLNGKEVVDDLG   93 (114)
T ss_dssp             CCHHHHHHHHHHHSCEEEEECCTT----------CSCEEEEESSHHHHHHHHH---------------HTTTCEEECTTS
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeCC----------CCEEEEEECCHHHHHHHHH---------------HhCCCEEccccC
Confidence            456889999999999999888642          2357999999999999999               8888887     


Q ss_pred             CCeEEEEEEecc
Q psy2134          83 AGRMVRAELYDQ   94 (104)
Q Consensus        83 ~GR~V~a~~yd~   94 (104)
                      .|+.+...|-..
T Consensus        94 ~g~~l~v~~a~~  105 (114)
T 2cq2_A           94 QKITLYLNFVEK  105 (114)
T ss_dssp             CEEECEEEEESC
T ss_pred             CCcEEEEEeccc
Confidence            688888887643

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=98.42  E-value=1.6e-06  Score=61.37  Aligned_cols=68  Identities=10%  Similarity=0.060  Sum_probs=56.8

Q ss_pred             eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .=++|+++-+++||  .|.+|.|..++...    ...|-.||+|.+.++|.+|+.               .|||..+.||
T Consensus        67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg----~skGfaFV~f~~~~~A~~Ai~---------------~lng~~~~Gr  127 (156)
T 3n9u_C           67 TTDQQLIQVIRSIGVYDVVELKFAENRANG----QSKGYAEVVVASENSVHKLLE---------------LLPGKVLNGE  127 (156)
T ss_dssp             CCHHHHHHHHHHTTCCCEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHH---------------HSTTCEETTE
T ss_pred             CCHHHHHHHHHHHCCccEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCe
Confidence            34678999999999  99999998765421    235678999999999999999               9999999999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|.+.+-..
T Consensus       128 ~l~V~~a~~  136 (156)
T 3n9u_C          128 KVDVRPATR  136 (156)
T ss_dssp             ECEEEECCH
T ss_pred             EeEEEEcCC
Confidence            999987643

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=98.42  E-value=9.5e-07  Score=59.22  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=55.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .|||..+.|+.+.
T Consensus        16 ~~~~l~~~f~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~a~~---------------~l~~~~~~g~~l~   76 (168)
T 1b7f_A           16 TDRELYALFRAIGPINTCRIMRDYKTG----YSYGYAFVDFTSEMDSQRAIK---------------VLNGITVRNKRLK   76 (168)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCeeEEEEEEeCCCC----ccceEEEEEECCHHHHHHHHH---------------hcCCCEeCCcEEE
Confidence            367889999999999999987754321    123468999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        77 v~~~~~   82 (168)
T 1b7f_A           77 VSYARP   82 (168)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            987654

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=98.42  E-value=7.5e-07  Score=64.97  Aligned_cols=61  Identities=21%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+++++-+++||.|.+|.|...+.         +-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus        18 ~~~~L~~~F~~~G~v~~v~i~~~~~---------g~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~l~   73 (205)
T 3tyt_A           18 NCDRVFNVFCLYGNVEKVKFMKSKP---------GAAMVEMADGYAVDRAIT---------------HLNNNFMFGQKMN   73 (205)
T ss_dssp             CHHHHHHHHTTTSCEEEEEECTTST---------TCEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCeEEEEEecCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCEECCceEE
Confidence            3567888899999999999976432         347999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      ..+-.
T Consensus        74 v~~s~   78 (205)
T 3tyt_A           74 VCVSK   78 (205)
T ss_dssp             EEECS
T ss_pred             EEEcc
Confidence            98753

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=5.3e-07  Score=57.76  Aligned_cols=67  Identities=15%  Similarity=0.002  Sum_probs=55.1

Q ss_pred             eehhHHHHHhhh-CCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce-eCCe
Q psy2134           8 VIYNEKQSDDEA-YGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF-FAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~k-yG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~-F~GR   85 (104)
                      .-++|+++-+++ ||.|.+|.|......     ...+-.||+|.+.++|.+|+.               .|||.. +.|+
T Consensus        21 ~t~~~l~~~F~~~~G~v~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~~g~   80 (104)
T 2dhg_A           21 VDDGMLYEFFVKVYPSCRGGKVVLDQTG-----VSKGYGFVKFTDELEQKRALT---------------ECQGAVGLGSK   80 (104)
T ss_dssp             CCHHHHHHHHHHHCTTEEEEEEEECTTC-----CEEEEEEEEESCHHHHHHHHH---------------HTTTCCSSSSS
T ss_pred             CCHHHHHHHHHHhCCCeEEEEEEECCCC-----CccceEEEEECCHHHHHHHHH---------------HccCCcccCCE
Confidence            346788888999 999999999876521     235678999999999999999               888888 8999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|.+.+-..
T Consensus        81 ~l~v~~a~~   89 (104)
T 2dhg_A           81 PVRLSVAIP   89 (104)
T ss_dssp             CCCCCBCCC
T ss_pred             eEEEEEccC
Confidence            998877644

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.42  E-value=7.8e-07  Score=57.22  Aligned_cols=67  Identities=18%  Similarity=0.173  Sum_probs=55.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               . ||..+.|+.|
T Consensus        28 ~t~~~l~~~F~~~G~v~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~a~~---------------~-~~~~~~g~~l   87 (105)
T 2dh8_A           28 TTQETLRSYFSQYGEVVDCVIMKDKTTN----QSRGFGFVKFKDPNCVGTVLA---------------S-RPHTLDGRNI   87 (105)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEEECSSSC----CEEEEEEEEESSTTHHHHHHH---------------H-CSEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeeCCCCC----CcceEEEEEECCHHHHHHHHH---------------h-CCCeECCEEE
Confidence            4467899999999999999998764321    234678999999999999999               8 9999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        88 ~V~~a~~   94 (105)
T 2dh8_A           88 DPKPCTP   94 (105)
T ss_dssp             BCCCSCC
T ss_pred             EEEEccC
Confidence            9887643

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=98.41  E-value=4.3e-07  Score=62.14  Aligned_cols=62  Identities=27%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++-+++||.|.+|.|...+         .+-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        86 t~~~l~~~F~~~G~i~~v~i~~~~---------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~  141 (150)
T 2i2y_A           86 NKTELERAFGYYGPLRSVWVARNP---------PGFAFVEFEDPRDAADAVR---------------ELDGRTLCGCRVR  141 (150)
T ss_dssp             SCHHHHHHHHHHSCEEEEEECSSS---------CSEEEEEESSHHHHHHHHH---------------HHSSSCSSSSCCE
T ss_pred             CHHHHHHHHHhhCCEEEEEEeeCC---------CcEEEEEECCHHHHHHHHH---------------HcCCCEECCeEEE
Confidence            357888889999999999998652         2368999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus       142 v~~a~~  147 (150)
T 2i2y_A          142 VELSNG  147 (150)
T ss_dssp             EEECCC
T ss_pred             EEEcCC
Confidence            987543

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.41  E-value=1.2e-06  Score=57.04  Aligned_cols=67  Identities=15%  Similarity=0.171  Sum_probs=53.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-----
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF-----   82 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F-----   82 (104)
                      .=.+|+++-+++||.|.+|.|...+..     ...+-.||+|.+.++|.+|+.               .|||..+     
T Consensus        37 ~t~~~l~~~F~~~G~i~~~~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~~~~~   96 (114)
T 1x5o_A           37 MDEQELENMLKPFGQVISTRILRDSSG-----TSRGVGFARMESTEKCEAVIG---------------HFNGKFIKTPPG   96 (114)
T ss_dssp             CCHHHHHHTTTTTSCEEEEEEEECSSS-----CEEEEEEEEESCHHHHHHHHH---------------HHBTCCCCCCTT
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEEcCCcc
Confidence            346788888999999999999876421     234678999999999999999               6666666     


Q ss_pred             ---CCeEEEEEEecc
Q psy2134          83 ---AGRMVRAELYDQ   94 (104)
Q Consensus        83 ---~GR~V~a~~yd~   94 (104)
                         .|+.+.+.|-++
T Consensus        97 ~~~~~~~l~v~~a~p  111 (114)
T 1x5o_A           97 VSAPTEPLLCKFSGP  111 (114)
T ss_dssp             SCCCSSCBEEEECCC
T ss_pred             ccCCCCceeEEccCC
Confidence               677888887654

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=98.40  E-value=1.1e-06  Score=59.72  Aligned_cols=61  Identities=16%  Similarity=0.107  Sum_probs=49.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++.+++||.|..+  ....       ...+..||+|.+.++|.+|+.               .|||+.+.||.|.
T Consensus       112 t~~~l~~~F~~~g~v~~~--~~~~-------~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~i~  167 (175)
T 1fje_B          112 TEDELKEVFEDALEIRLV--SQDG-------KSKGIAYIEFKSEADAEKNLE---------------EKQGAEIDGRSVS  167 (175)
T ss_dssp             CHHHHHHHCTTCSEEEEE--CSSS-------SCCSEEEEECSSHHHHHHHHH---------------HHTEEEETTEEEE
T ss_pred             CHHHHHHHHHhcCeEEEe--cCCC-------CCceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEEE
Confidence            467899999999999764  1111       123568999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.|-.
T Consensus       168 v~~a~  172 (175)
T 1fje_B          168 LYYTG  172 (175)
T ss_dssp             EEECS
T ss_pred             EEecC
Confidence            98764

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=98.40  E-value=5e-07  Score=59.50  Aligned_cols=66  Identities=15%  Similarity=0.226  Sum_probs=51.7

Q ss_pred             eehhHHHHHhhhCCc--eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc----e
Q psy2134           8 VIYNEKQSDDEAYGQ--VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR----F   81 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~--V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR----~   81 (104)
                      .=++++++-+++||.  |.+|.|..++.+.    ...+-.||+|.+.++|.+|++               .|||.    .
T Consensus        21 ~tee~L~~~F~~~G~i~v~~v~i~~d~~tg----~srG~aFV~f~~~~~A~~Ai~---------------~lng~~~~~~   81 (95)
T 2lkz_A           21 TVVDSIMTALSPYASLAVNNIRLIKDKQTQ----QNRGFAFVQLSSAMDASQLLQ---------------ILQSLHPPLK   81 (95)
T ss_dssp             CCHHHHHHHSTTTCCCCGGGEECCCCSSSS----SCSSEEEEECSSSHHHHHHHH---------------HHHSSSSCEE
T ss_pred             CCHHHHHHHHHhhCCccEEEEEEEecCCCC----CCceEeEEEECCHHHHHHHHH---------------HhcCCCCCce
Confidence            346889999999995  6688887765421    123468999999999999999               77776    5


Q ss_pred             eCCeEEEEEEe
Q psy2134          82 FAGRMVRAELY   92 (104)
Q Consensus        82 F~GR~V~a~~y   92 (104)
                      ++||.|.+.|-
T Consensus        82 i~Gr~i~V~~A   92 (95)
T 2lkz_A           82 IDGKTIGVDFA   92 (95)
T ss_dssp             ETTEEEEEEEC
T ss_pred             ECCEEEEEEEc
Confidence            89999998864

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.39  E-value=6e-07  Score=65.08  Aligned_cols=62  Identities=11%  Similarity=0.124  Sum_probs=52.5

Q ss_pred             ehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC-CeE
Q psy2134           9 IYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA-GRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~-GR~   86 (104)
                      -.+++++.+++|| .|..|.|.....         +..||+|.+.++|.+|+.               .|||+.+. |+.
T Consensus       164 t~~~l~~~f~~~G~~i~~v~i~~~~~---------g~afV~f~~~~~A~~Ai~---------------~l~g~~~~~g~~  219 (229)
T 2adc_A          164 SEEDLKVLFSSNGGVVKGFKFFQKDR---------KMALIQMGSVEEAVQALI---------------DLHNHDLGENHH  219 (229)
T ss_dssp             CHHHHHHHHHTTSCCEEEEEECSSST---------TCEEEEESSHHHHHHHHH---------------HHTTCBSSSSCB
T ss_pred             CHHHHHHHHHHcCCCeeEEEEEECCC---------cEEEEEECCHHHHHHHHH---------------HHCCCccCCCCe
Confidence            4688999999999 999999854221         358999999999999999               99999999 999


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      |.+.|-..
T Consensus       220 l~v~~a~~  227 (229)
T 2adc_A          220 LRVSFSKS  227 (229)
T ss_dssp             CEEEECSS
T ss_pred             EEEEEecC
Confidence            99987543

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.38  E-value=1.5e-06  Score=56.90  Aligned_cols=67  Identities=22%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++++++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               . ||..+.|+.|
T Consensus        39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~Ai~---------------~-~~~~~~g~~l   98 (116)
T 1x4b_A           39 TTEESLRNYYEQWGKLTDCVVMRDPASK----RSRGFGFVTFSSMAEVDAAMA---------------A-RPHSIDGRVV   98 (116)
T ss_dssp             CCHHHHHHHHTSSCCCSEEEEECCTTTS----SCCSEEEEECSSHHHHHHHHT---------------S-CSEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEECCCCC----CcCceEEEEeCCHHHHHHHHH---------------h-CCcEECCEEE
Confidence            3467889899999999999998764421    123568999999999999999               7 9999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        99 ~V~~a~~  105 (116)
T 1x4b_A           99 EPKRAVA  105 (116)
T ss_dssp             EEECCSS
T ss_pred             EEEECCC
Confidence            9987643

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=98.38  E-value=4.7e-07  Score=54.93  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=49.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||.|.+|.|+..+.+.    ...+-.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~----------------~~~~~~~g~~l   70 (75)
T 2mss_A           11 TTVEDVKHYFEQFGKVDDAMLMFDKTTN----RHRGFGFVTFESEDIVEKVCE----------------IHFHEINNKMV   70 (75)
T ss_dssp             CCHHHHHHHHHTTSCCSEECCCBCSSST----TSCBEEEEECSCHHHHHHHHS----------------SSCCCSSSCCC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcCcEEEEEECCHHHHHHHHH----------------CCCCEECCEEE
Confidence            3467889999999999999887765321    234578999999999998876                57777788887


Q ss_pred             EEE
Q psy2134          88 RAE   90 (104)
Q Consensus        88 ~a~   90 (104)
                      .+.
T Consensus        71 ~v~   73 (75)
T 2mss_A           71 ECK   73 (75)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=98.37  E-value=9.3e-07  Score=60.03  Aligned_cols=63  Identities=13%  Similarity=0.051  Sum_probs=52.2

Q ss_pred             eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-.+|+++-+++|| .|..+.|+... +       .+..||+|++.++|.+|+.               .|||..+.||.
T Consensus        40 ~te~dL~~~F~~~G~~v~~v~i~~~~-~-------rGfaFV~F~~~e~A~~Ai~---------------~lng~~l~Gr~   96 (111)
T 2jvr_A           40 CSWQDLKDLARENSLETTFSSVNTRD-F-------DGTGALEFPSEEILVEALE---------------RLNNIEFRGSV   96 (111)
T ss_dssp             CCHHHHHHHHHHHTCCCSEEECSSCS-S-------SCCEEEEESSHHHHHHHHH---------------HTTTEEETTEE
T ss_pred             CCHHHHHHHHHHhCCeeEEEEEEcCC-C-------CCEEEEEECCHHHHHHHHH---------------HcCCCEECCeE
Confidence            34678888899999 89998886321 1       2357999999999999999               99999999999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |.+.+-.
T Consensus        97 i~V~~a~  103 (111)
T 2jvr_A           97 ITVERDD  103 (111)
T ss_dssp             EEEEESC
T ss_pred             EEEEECC
Confidence            9998653

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.36  E-value=4.9e-07  Score=54.76  Aligned_cols=64  Identities=8%  Similarity=0.112  Sum_probs=50.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|+..+.+.    ...+-.||+|.+.++|.+|+.               .|| ..+.|+.+
T Consensus        12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~a~~---------------~~~-~~~~g~~l   71 (77)
T 1uaw_A           12 TTQEGLREYFGQFGEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLA---------------QSR-HELDSKTI   71 (77)
T ss_dssp             CCSHHHHHHHTTTSCCCCEEEECCCCSS----SCSSEEEECCCCTTHHHHHHH---------------TTT-CCCSSCCC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEecCCCCC----CcCceEEEEEcCHHHHHHHHH---------------hCC-CccCCEEE
Confidence            3467889999999999999998765421    123568999999999999999               777 77888887


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ...+
T Consensus        72 ~v~~   75 (77)
T 1uaw_A           72 DPKV   75 (77)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7654

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.7e-06  Score=55.07  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=52.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        22 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~----------------~~~~~~~g~~l   81 (99)
T 2dgs_A           22 CGETELREYFKKFGVVTEVVMIYDAEKQ----RPRGFGFITFEDEQSVDQAVN----------------MHFHDIMGKKV   81 (99)
T ss_dssp             CCHHHHHHHHSSSSCEEEEEECCCTTTC----SCCSEEEEEESSHHHHHHHHH----------------HCCCBSSSCBC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEeCCCCC----CCCceEEEEECCHHHHHHHHH----------------hCCCEECCeEE
Confidence            4467889899999999999998764321    123568999999999999987                46777788899


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        82 ~V~~a~~   88 (99)
T 2dgs_A           82 EVKRAEP   88 (99)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9887654

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=98.35  E-value=2.9e-06  Score=56.00  Aligned_cols=66  Identities=14%  Similarity=0.249  Sum_probs=52.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+...    ...+..||+|.+.++|.+|+.                |||..|.|+.|
T Consensus        48 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l  107 (124)
T 2jwn_A           48 STAQDLEAHFSSCGSINRITILCDKFSG----HPKGYAYIEFAERNSVDAAVA----------------MDETVFRGRTI  107 (124)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEEEECTTS----SCEEEEEEEESSHHHHHHHHT----------------TTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEecCCCC----CcccEEEEEECCHHHHHHHHh----------------cCCCeECCeEE
Confidence            3467889899999999999998754321    235678999999999999984                56777889999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus       108 ~V~~a~  113 (124)
T 2jwn_A          108 KVLPKR  113 (124)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            988754

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=98.35  E-value=4.2e-07  Score=62.40  Aligned_cols=68  Identities=28%  Similarity=0.362  Sum_probs=55.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+...    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        59 ~te~~L~~~F~~~G~i~~v~i~~~~~~g----~~~G~afV~F~~~~~A~~Ai~---------------~l~g~~i~g~~l  119 (135)
T 2lea_A           59 TSPDTLRRVFEKYGRVGDVYIPRDRYTK----ESRGFAFVRFHDKRDAEDAMD---------------AMDGAVLDGREL  119 (135)
T ss_dssp             CHHHHHHHHHGGGSCCSEEECCCCSSSS----SCCSCCEEECSCHHHHHHHHT---------------TTTTCCSSSSCC
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCEECCEEE
Confidence            3467889999999999999987654321    123458999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       120 ~V~~a~~  126 (135)
T 2lea_A          120 RVQMARY  126 (135)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9987654

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=98.34  E-value=3.1e-06  Score=60.70  Aligned_cols=67  Identities=18%  Similarity=0.181  Sum_probs=55.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++++++-+++||.|++|.|..++.+.    ...+-.||+|.+.++|.+|+.               .|||..+.|+.+
T Consensus        27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~~G~afV~F~~~~~A~~Ai~---------------~~~~~~~~g~~i   87 (213)
T 4f02_A           27 VTEAMLYEKFSPAGPILSIRVCRDMITR----RSLGYAYVNFQQPADAERALD---------------TMNFDVIKGKPV   87 (213)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhhCCEEEEEEecccCCC----CccccccceeCCHHHHHHHHH---------------HhhhhhcCCccc
Confidence            3467889999999999999998765421    235678999999999999999               899999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      +...-.
T Consensus        88 ~~~~~~   93 (213)
T 4f02_A           88 RIMWSQ   93 (213)
T ss_dssp             EEEECC
T ss_pred             cccccc
Confidence            877543

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=98.33  E-value=1.4e-06  Score=58.52  Aligned_cols=67  Identities=12%  Similarity=0.066  Sum_probs=52.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+..    ....+..||+|.+.++|.+|+.                |||..+.||.|
T Consensus        99 ~t~~~l~~~F~~~G~i~~~~i~~~~~~----g~~~g~afV~f~~~~~a~~A~~----------------~~~~~~~g~~i  158 (167)
T 2cjk_A           99 VRPKEFEEFFSQWGTIIDAQLMLDKDT----GQSRGFGFVTYDSADAVDRVCQ----------------NKFIDFKDRKI  158 (167)
T ss_dssp             CCHHHHHHHHHTTSCCSEEECCCSSSS----STTSEEEEEEESSHHHHHHHHH----------------CSEECSSSSCE
T ss_pred             CCHHHHHHHHHhCccEEEEEEEEcCCC----CccceEEEEEECCHHHHHHHHh----------------CCCEEeCCeEE
Confidence            346789999999999999998776432    1234578999999999999987                47888889999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-.+
T Consensus       159 ~V~~a~p  165 (167)
T 2cjk_A          159 EIKRAEP  165 (167)
T ss_dssp             EEEECCC
T ss_pred             EEeecCC
Confidence            9887543

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.33  E-value=1.5e-06  Score=60.35  Aligned_cols=66  Identities=14%  Similarity=0.223  Sum_probs=54.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR   85 (104)
                      .-++|+++-+++||.|.+|.|...+          +-.||+|++.++|.+|+.               .||  |..+.||
T Consensus        43 vte~dL~~lF~~fG~V~~v~i~~~k----------G~AFVeF~~~e~A~~Ai~---------------~l~~~~~~l~Gr   97 (119)
T 2ad9_A           43 VTEGEVISLGLPFGKVTNLLMLKGK----------NQAFIEMNTEEAANTMVN---------------YYTSVTPVLRGQ   97 (119)
T ss_dssp             CCHHHHHHHHTTTSCCCEEEEEGGG----------TEEEEECSCHHHHHHHHH---------------HHHHHCCCBTTB
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeCCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCe
Confidence            4568899999999999999998642          468999999999999999               776  4689999


Q ss_pred             EEEEEEecccccc
Q psy2134          86 MVRAELYDQSLFD   98 (104)
Q Consensus        86 ~V~a~~yd~~~f~   98 (104)
                      .|.+.+-......
T Consensus        98 ~l~V~~a~~k~~~  110 (119)
T 2ad9_A           98 PIYIQFSNHKELK  110 (119)
T ss_dssp             CCEEEECSSSSCC
T ss_pred             EEEEEEccCCCCC
Confidence            9999987654443

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=98.32  E-value=1.1e-06  Score=58.44  Aligned_cols=52  Identities=17%  Similarity=0.264  Sum_probs=45.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      =++|+++-+++||.|..|.|..+           +..||+|.+.++|.+|+.               .|||..+.|+.
T Consensus        29 t~~~l~~~F~~~G~v~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~gr~   80 (115)
T 3beg_B           29 SWQDLKDHMREAGDVCYADVYRD-----------GTGVVEFVRKEDMTYAVR---------------KLDNTKFRSHE   80 (115)
T ss_dssp             CTTHHHHHHGGGSCEEEEEECTT-----------SEEEEEESSHHHHHHHHH---------------HHTTCBCCCTT
T ss_pred             CHHHHHHHHHhcCCeEEEEEecC-----------CEEEEEECCHHHHHHHHH---------------HhCCCEECCcE
Confidence            36788989999999999988753           468999999999999999               88888888877

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.32  E-value=3.3e-06  Score=55.15  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|...+...    ...+..||+|.+.++|.+|+.                |||..|.|+.|
T Consensus        37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l   96 (114)
T 2cq4_A           37 IRPRDLEDFFSAVGKVRDVRIISDRNSR----RSKGIAYVEFCEIQSVPLAIG----------------LTGQRLLGVPI   96 (114)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEECCSCCSS----SCCCCEEEEESCGGGHHHHHH----------------HTTEEETTEEE
T ss_pred             CCHHHHHHHHHhCCCEeEEEEEecCCCC----ccCcEEEEEeCcHHHHHHHHH----------------cCCCEeCCeEE
Confidence            3467889899999999999998755421    123568999999999999984                45777788999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+..
T Consensus        97 ~V~~a~  102 (114)
T 2cq4_A           97 IVQASQ  102 (114)
T ss_dssp             EEEEHH
T ss_pred             EEEecC
Confidence            888753

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.31  E-value=1.3e-06  Score=59.71  Aligned_cols=62  Identities=15%  Similarity=0.239  Sum_probs=51.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR   85 (104)
                      .=++|+++-+++||.|.+|.|...+          +-.||+|++.++|..|+.               .|+  |..+.||
T Consensus        28 vte~dL~~lF~~fG~V~~v~i~~~k----------GfaFVeF~~~~~A~~Ai~---------------~l~~~~~~l~Gr   82 (105)
T 1sjq_A           28 VTEGEVISLGLPFGKVTNLLMLKGK----------NQAFIEMNTEEAANTMVN---------------YYTSVTPVLRGQ   82 (105)
T ss_dssp             SCHHHHHHHHHHHCCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTSCCEETTE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEEcCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCE
Confidence            3467889999999999999998642          358999999999999999               775  4789999


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|...+-..
T Consensus        83 ~l~V~~A~~   91 (105)
T 1sjq_A           83 PIYIQFSNH   91 (105)
T ss_dssp             ECCBCCCSS
T ss_pred             EEEEEEcCC
Confidence            998876544

>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A

Probab=98.31  E-value=2.3e-06  Score=53.87  Aligned_cols=64  Identities=14%  Similarity=0.131  Sum_probs=53.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++| .|.+|.|..          ..+-.||+|.+.++|.+|+.               .|||..+.||.+
T Consensus        17 ~t~~~l~~~F~~~-~v~~~~i~~----------~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~l   70 (88)
T 1wg1_A           17 SNCQEVHDLLKDY-DLKYCYVDR----------NKRTAFVTLLNGEQAQNAIQ---------------MFHQYSFRGKDL   70 (88)
T ss_dssp             CCHHHHHHHTCSS-CCCCEEEEG----------GGTEEEECCSCHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             CCHHHHHHHHhhC-CeEEEEEeC----------CCcEEEEEECCHHHHHHHHH---------------HhCCCeECCcEE
Confidence            3467888889999 999998851          12368999999999999999               999999999999


Q ss_pred             EEEEeccccc
Q psy2134          88 RAELYDQSLF   97 (104)
Q Consensus        88 ~a~~yd~~~f   97 (104)
                      ...+-+.+.+
T Consensus        71 ~V~~a~~~~~   80 (88)
T 1wg1_A           71 IVQLQPTDAL   80 (88)
T ss_dssp             EEEECCCCCC
T ss_pred             EEEEcCCCce
Confidence            9998776554

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=98.30  E-value=5.9e-07  Score=61.78  Aligned_cols=60  Identities=20%  Similarity=0.346  Sum_probs=50.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~GR~   86 (104)
                      -++|+++-|++||.|.+|.|...+          +-.||+|.+.++|..|+.               .||  +..+.||.
T Consensus        39 te~~L~~lF~~fG~V~~v~i~~~k----------g~aFVef~~~~~A~~Ai~---------------~l~~~~~~l~Gr~   93 (112)
T 1x4f_A           39 SDSAVLKLAEPYGKIKNYILMRMK----------SQAFIEMETREDAMAMVD---------------HCLKKALWFQGRC   93 (112)
T ss_dssp             CSHHHHTTTTTTSCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHHHSCCCSSSSC
T ss_pred             CHHHHHHHHHhcCCEEEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhccCCceECCEE
Confidence            457889999999999999997532          358999999999999999               765  45689999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |.+.+-.
T Consensus        94 l~V~~a~  100 (112)
T 1x4f_A           94 VKVDLSE  100 (112)
T ss_dssp             CEEEEEC
T ss_pred             EEEEECc
Confidence            9998753

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=6.4e-07  Score=57.21  Aligned_cols=63  Identities=16%  Similarity=0.183  Sum_probs=50.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||.|. +.|.....        .+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        31 ~t~~~l~~~F~~~G~v~-~~~~~~~~--------~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   86 (97)
T 2e5j_A           31 ARVSDLKRALRELGSVP-LRLTWQGP--------RRRAFLHYPDSAAAQQAVS---------------CLQGLRLGTDTL   86 (97)
T ss_dssp             CCHHHHHHHHHHTTCCC-SEEEEETT--------TTEEEEECSSHHHHHHHHH---------------HHTTCCSSSSCC
T ss_pred             CcHHHHHHHHHhcCCEE-EEEEcCCC--------CcEEEEEECCHHHHHHHHH---------------HhCCCEECCcEE
Confidence            34678898999999996 44543221        2358999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        87 ~V~~a~~   93 (97)
T 2e5j_A           87 RVALARQ   93 (97)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9887543

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.29  E-value=2.2e-06  Score=55.28  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             eehhHHHHHhhhCCc-eeEEEEe-cCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc--CceeC
Q psy2134           8 VIYNEKQSDDEAYGQ-VEKVVIY-NEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN--GRFFA   83 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~-V~kV~I~-~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln--GR~F~   83 (104)
                      .-.+|+++-+++||. |.+|.|+ .+..+    ....+-.||+|.+.++|.+|+.               .||  +..+.
T Consensus        20 ~t~~~l~~~f~~~G~~v~~v~i~~~~~~~----g~~~g~afV~f~~~~~A~~A~~---------------~l~~g~~~~~   80 (109)
T 2dis_A           20 KKREEILEEIAKVTEGVLDVIVYASAADK----MKNRGFAFVEYESHRAAAMARR---------------KLMPGRIQLW   80 (109)
T ss_dssp             SCHHHHHHHHHHHSTTEEEEECCSSSCTT----TTTCCEEEEEESSHHHHHHHHT---------------TTTTCCSCBT
T ss_pred             CCHHHHHHHHHHhcCCceEEEEEccCCCC----CCcCcEEEEEecCHHHHHHHHH---------------HhhCCCceec
Confidence            346789999999998 9999887 33321    1123568999999999999999               885  47899


Q ss_pred             CeEEEEEEeccc
Q psy2134          84 GRMVRAELYDQS   95 (104)
Q Consensus        84 GR~V~a~~yd~~   95 (104)
                      |+.|.+.+-...
T Consensus        81 g~~l~V~~a~~~   92 (109)
T 2dis_A           81 GHQIAVDWAEPE   92 (109)
T ss_dssp             TBCCEEEESCSS
T ss_pred             CCeEEEEEcCCC
Confidence            999999887543

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=98.28  E-value=2.5e-06  Score=69.38  Aligned_cols=68  Identities=16%  Similarity=0.275  Sum_probs=56.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +-.++|++.+++||.|+.|.|+..+.+.    ...+-.||+|.+.++|..|+.               .|||..|.|+.|
T Consensus       114 ~te~~L~~~F~~~G~I~~v~i~~d~~tg----~~kG~aFV~F~~~e~A~~Ai~---------------~lng~~i~gr~i  174 (437)
T 3pgw_S          114 TTESKLRREFEVYGPIKRIHMVYSKRSG----KPRGYAFIEYEHERDMHSAYK---------------HADGKKIDGRRV  174 (437)
T ss_pred             CCHHHHHHHHHHcCCeeEEEeeccCCCC----CccceEEEeeccHHHHHHHHH---------------HcCCCEECCEEE
Confidence            3467899999999999999997654321    124568999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus       175 ~V~~a~~  181 (437)
T 3pgw_S          175 LVDVERG  181 (437)
T ss_pred             EEEEeCC
Confidence            9998653

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=98.28  E-value=3.6e-06  Score=62.05  Aligned_cols=67  Identities=24%  Similarity=0.270  Sum_probs=50.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++.+++||.|.+|.|+......   ....+..||+|.+.++|.+|+ +|               ||+.+.||.|
T Consensus       223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~t---g~~~g~afV~F~~~~~A~~A~-~l---------------~g~~~~g~~i  283 (292)
T 2ghp_A          223 LDENLLRESFEGFGSIEKINIPAGQKEH---SFNNCCAFMVFENKDSAERAL-QM---------------NRSLLGNREI  283 (292)
T ss_dssp             CCHHHHHHHHGGGSCEEEEECCSCCC------CCCEEEEEEESSHHHHHHHG-GG---------------TTEEETTEEE
T ss_pred             CCHHHHHHHHhccCCeeEEEEEecCCcC---CCCceEEEEEeCCHHHHHHHH-Hh---------------cCCEECCcEE
Confidence            3467899999999999999887754300   123467899999999999998 44               5666689999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus       284 ~V~~a~  289 (292)
T 2ghp_A          284 SVSLAD  289 (292)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988754

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=98.27  E-value=4.7e-06  Score=54.86  Aligned_cols=66  Identities=8%  Similarity=0.068  Sum_probs=52.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|.....+.    ...+-.||+|.+.++|.+|+.               .+ |..+.||.|
T Consensus        37 ~te~~L~~~F~~~G~i~~v~i~~~~~tg----~~kg~afV~f~~~~~A~~Ai~---------------~~-~~~l~g~~l   96 (109)
T 2rs2_A           37 TTQEGLREYFGQFGEVKECLVMRDPLTK----RSRGFGFVTFMDQAGVDKVLA---------------QS-RHELDSKTI   96 (109)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEECCCTTTC----CCTTCEEEEESSHHHHHHHHH---------------SS-CEEETTEEE
T ss_pred             CCHHHHHHHHHccCCeEEEEEEECCCCC----CcCcEEEEEECCHHHHHHHHH---------------HC-CCcCCCEEE
Confidence            3467889999999999999998764321    123458999999999999999               76 488999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        97 ~V~~a~  102 (109)
T 2rs2_A           97 DPKVAF  102 (109)
T ss_dssp             EEEECC
T ss_pred             EEEEcc
Confidence            988754

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=98.25  E-value=2e-06  Score=61.79  Aligned_cols=68  Identities=18%  Similarity=0.198  Sum_probs=56.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|......     ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus       100 ~te~~L~~~F~~~G~I~~v~i~~d~~g-----~~kG~afV~F~~~~~A~~Ai~---------------~lng~~l~Gr~l  159 (177)
T 2f3j_A          100 VSDADIQELFAEFGTLKKAAVDYDRSG-----RSLGTADVHFERRADALKAMK---------------QYKGVPLDGRPM  159 (177)
T ss_dssp             CCHHHHHHHHHHTSCCSEEEECCCTTS-----SCSCCEEEEESCHHHHHHHHH---------------HSTTCBCSSSBC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEECCCC-----CEeeEEEEEeCCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            346889999999999999999875421     123458999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus       160 ~V~~a~~~  167 (177)
T 2f3j_A          160 DIQLVASQ  167 (177)
T ss_dssp             EEEEESSG
T ss_pred             EEEEecCC
Confidence            99886543

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.23  E-value=2.9e-06  Score=56.13  Aligned_cols=63  Identities=16%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++-+++||+|.+|.|+..+..     ...|-.||+|++.++|.+|+.                +||..|.||.|
T Consensus        23 ~te~~L~~~F~~~G~v~~v~i~~d~~g-----~~rG~aFV~F~~~e~a~~Ai~----------------~~~~~~~gr~l   81 (103)
T 1s79_A           23 ATLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE----------------TPGQKYKETDL   81 (103)
T ss_dssp             CCHHHHHHHHHTSSCEEEEEEECCCTT-----SCCCEEEEEESSHHHHHHHHT----------------SSCCCCTTTTC
T ss_pred             CCHHHHHHHHhhcCCEEEEEEEECCCC-----CCccEEEEEECCHHHHHHHHH----------------cCCCEECCEEE
Confidence            346788999999999999999876531     123568999999999999997                46777788888


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ...+
T Consensus        82 ~V~~   85 (103)
T 1s79_A           82 LILF   85 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7764

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.22  E-value=1.8e-06  Score=54.38  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=50.4

Q ss_pred             eehhHHHHHhhhCCc-eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC-ceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQ-VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG-RFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~-V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG-R~F~GR   85 (104)
                      .=++|+++-+++||. |..+.|..           .+-.||+|.+.++|.+|+.               .||| ..+.|+
T Consensus        20 ~t~~~l~~~F~~~G~vv~~~~~~~-----------~g~afV~f~~~~~A~~A~~---------------~l~g~~~~~g~   73 (93)
T 2cqh_A           20 VTADDLRQLFGDRKLPLAGQVLLK-----------SGYAFVDYPDQNWAIRAIE---------------TLSGKVELHGK   73 (93)
T ss_dssp             CCHHHHHHHHHHTTCCCSSCEEEE-----------TTEEEECCSCHHHHHHHHH---------------HHTTTCEETTE
T ss_pred             CCHHHHHHHHHHcCCceEEEEEcC-----------CCEEEEEECCHHHHHHHHH---------------HccCCeeECCE
Confidence            346788999999999 66555531           1358999999999999999               9999 899999


Q ss_pred             EEEEEEeccc
Q psy2134          86 MVRAELYDQS   95 (104)
Q Consensus        86 ~V~a~~yd~~   95 (104)
                      .|.+.+-...
T Consensus        74 ~l~v~~a~~~   83 (93)
T 2cqh_A           74 IMEVDYSVSK   83 (93)
T ss_dssp             ECEEEECCCC
T ss_pred             EEEEEEccCc
Confidence            9999876543

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=98.22  E-value=3.1e-06  Score=59.00  Aligned_cols=67  Identities=12%  Similarity=0.167  Sum_probs=52.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+...    ...+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~l~~~~~~g~~l  100 (216)
T 2qfj_A           40 LGEDTIRQAFAPFGPIKSIDMSWDSVTM----KHKGFAFVEYEVPEAAQLALE---------------QMNSVMLGGRNI  100 (216)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEECCC-CC-----CCCSEEEEEESSHHHHHHHHH---------------HHSSCCCC-CCC
T ss_pred             CCHHHHHHHHHhCCCEEEEEEeecCCCC----ccCceEEEEeCCHHHHHHHHH---------------HccCCeeCCeeE
Confidence            3467899999999999999997654321    124568999999999999999               889999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+..
T Consensus       101 ~v~~~~  106 (216)
T 2qfj_A          101 KVGRPS  106 (216)
T ss_dssp             EEECCS
T ss_pred             EEecCC
Confidence            886543

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=98.22  E-value=5e-06  Score=61.00  Aligned_cols=60  Identities=17%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             HHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          13 KQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        13 v~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      +.+-+++||.|.+|.|.....       ..+-.||+|.+.++|.+|+.               .|||..+.||.|.+.+-
T Consensus        30 L~~~F~~~G~i~~v~~~~~~~-------~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l~v~~a   87 (282)
T 3pgw_A           30 LYAIFSQFGQILDILVSRSLK-------MRGQAFVIFKEVSSATNALR---------------SMQGFPFYDKPMRIQYA   87 (282)
T ss_pred             HHHHHhccCCeEEEEEcCCCC-------cceEEEEEECCHHHHHHHHH---------------HhcCCeeCCcEEEEEEe
Confidence            447899999999998876332       23578999999999999999               99999999999999876


Q ss_pred             cc
Q psy2134          93 DQ   94 (104)
Q Consensus        93 d~   94 (104)
                      ..
T Consensus        88 ~~   89 (282)
T 3pgw_A           88 KT   89 (282)
T ss_pred             cc
Confidence            44

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=98.22  E-value=8.3e-06  Score=59.85  Aligned_cols=70  Identities=14%  Similarity=0.194  Sum_probs=57.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|.+|.|.......    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus       107 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~i  167 (284)
T 3smz_A          107 LTQQQFEELVRPFGSLERCFLVYSERTG----QSKGYGFAEYMKKDSAARAKS---------------DLLGKPLGPRTL  167 (284)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeeEEEEEeeCCCC----ccceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcEE
Confidence            3467899999999999999887654321    234678999999999999999               999999999999


Q ss_pred             EEEEecccc
Q psy2134          88 RAELYDQSL   96 (104)
Q Consensus        88 ~a~~yd~~~   96 (104)
                      .+.+-+...
T Consensus       168 ~v~~a~~~~  176 (284)
T 3smz_A          168 YVHWTDAGQ  176 (284)
T ss_dssp             EEEECCGGG
T ss_pred             EEEECCCCC
Confidence            998876543

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.22  E-value=1.2e-05  Score=51.35  Aligned_cols=66  Identities=14%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .  |..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~---------------~--~~~~~g~~l   85 (103)
T 2cqg_A           27 TTEQDLKEYFSTFGEVLMVQVKKDLKTG----HSKGFGFVRFTEYETQVKVMS---------------Q--RHMIDGRWC   85 (103)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------S--CEEETTEEE
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----CccceEEEEECCHHHHHHHHH---------------c--CCeeCCeEE
Confidence            3467889999999999999998765421    234678999999999999999               4  668899999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        86 ~v~~a~~   92 (103)
T 2cqg_A           86 DCKLPNS   92 (103)
T ss_dssp             EEECCCT
T ss_pred             EEEecCC
Confidence            9887643

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.21  E-value=1.2e-05  Score=51.61  Aligned_cols=67  Identities=13%  Similarity=0.270  Sum_probs=52.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++|| |.+|.|...+.+.    ...+-.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~g-i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l   85 (103)
T 2dng_A           27 TVQGDIDAIFKDLS-IRSVRLVRDKDTD----KFKGFCYVEFDEVDSLKEALT----------------YDGALLGDRSL   85 (103)
T ss_dssp             CCHHHHHHHTTTSC-EEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHGG----------------GTTCEETTEEC
T ss_pred             CCHHHHHHHHHhCC-ceEEEEeecCCCC----ccceEEEEEECCHHHHHHHHh----------------hCCCeECCeEE
Confidence            44678898999998 9999998765421    234678999999999999984                56778889999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        86 ~V~~a~~~   93 (103)
T 2dng_A           86 RVDIAEGR   93 (103)
T ss_dssp             EEEECCCC
T ss_pred             EEEEecCC
Confidence            99876543

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.21  E-value=5.1e-06  Score=52.99  Aligned_cols=65  Identities=20%  Similarity=0.210  Sum_probs=50.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|   .|.....     ....+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~g~v---~~~~~~~-----g~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l   83 (101)
T 2fc9_A           27 ATEETLQEVFEKATFI---KVPQNQN-----GKSKGYAFIEFASFEDAKEALN---------------SCNKREIEGRAI   83 (101)
T ss_dssp             CCHHHHHHHCSSCSEE---ECCBCSS-----SCBCSEEEEECSSHHHHHHHHH---------------HTSSEEETTEEE
T ss_pred             CCHHHHHHHHHhCCEE---EEEECCC-----CCEeeEEEEEECCHHHHHHHHH---------------HhCCCEeCCeEE
Confidence            3467888889999988   2443321     1223568999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        84 ~v~~a~~~   91 (101)
T 2fc9_A           84 RLELQGPR   91 (101)
T ss_dssp             EEEECSSC
T ss_pred             EEEEcCCC
Confidence            99987543

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.20  E-value=4.4e-06  Score=54.29  Aligned_cols=69  Identities=14%  Similarity=0.029  Sum_probs=53.8

Q ss_pred             eehhHHHHHhhhCCceeE-EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEK-VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~k-V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-++|+++-+++||.|.+ |.|......     .-.+-.||+|++.++|.+|+.               . ||..+.||.
T Consensus        27 ~te~~l~~~F~~~G~v~~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~A~~---------------~-~~~~~~gr~   85 (104)
T 1wg5_A           27 CSKEEIVQFFSGLEIVPNGMTLPVDFQG-----RSTGEAFVQFASQEIAEKALK---------------K-HKERIGHRY   85 (104)
T ss_dssp             CCHHHHHHHTTTCCEEEEEEECCBCSSS-----CBCSEEEEEESSHHHHHHHHT---------------T-TTCCSSSSC
T ss_pred             CCHHHHHHHHHhcCCcceeEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------h-CcchhCCcE
Confidence            346789999999999987 777654221     123568999999999999999               7 888999999


Q ss_pred             EEEEEeccccc
Q psy2134          87 VRAELYDQSLF   97 (104)
Q Consensus        87 V~a~~yd~~~f   97 (104)
                      |....-....+
T Consensus        86 i~v~~~~~~~~   96 (104)
T 1wg5_A           86 IEIFKSSRAEV   96 (104)
T ss_dssp             CEEEEECTTTS
T ss_pred             EEEEECCHHHH
Confidence            98877655544

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=98.20  E-value=1.1e-06  Score=53.14  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=49.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+|.|+..+.+.    ...+-.||+|.+.++|.+|+.               . +|..+.|+.+
T Consensus        11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~a~~Ai~---------------~-~~~~~~g~~l   70 (75)
T 1iqt_A           11 TPEEKIREYFGGFGEVESIELPMDNKTN----KRRGFCFITFKEEEPVKKIME---------------K-KYHNVGLSKC   70 (75)
T ss_dssp             CCHHHHHHHHHHHSCCSEECCCCSCCCS----SSCCCEEEECSSSHHHHHHHT---------------T-SSCCBTTBCC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----CcCCEEEEEECCHHHHHHHHH---------------h-CCCeECCEEE
Confidence            3467888889999999998887654421    123468999999999999998               5 7777888877


Q ss_pred             EEE
Q psy2134          88 RAE   90 (104)
Q Consensus        88 ~a~   90 (104)
                      ...
T Consensus        71 ~v~   73 (75)
T 1iqt_A           71 EIK   73 (75)
T ss_dssp             CEE
T ss_pred             EEE
Confidence            654

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=98.20  E-value=3.6e-06  Score=62.70  Aligned_cols=67  Identities=9%  Similarity=0.100  Sum_probs=56.2

Q ss_pred             eehhHHHHHhhhCC--ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAYG--QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG--~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .=++|+++-+++||  .|.+|.|...+.+.    .-.+-.||+|.+.++|.+|+.               .|||..|.||
T Consensus        80 ~te~~L~~~F~~~G~~~v~~v~i~~d~~tg----~skGfaFV~f~~~~~a~~Ai~---------------~lng~~~~Gr  140 (229)
T 3q2s_C           80 TTDEDLTEAVHSLGVNDILEIKFFENRANG----QSKGFALVGVGSEASSKKLMD---------------LLPKRELHGQ  140 (229)
T ss_dssp             CCHHHHHHHHHTTTCCCEEEEEEEECTTTC----CEEEEEEEEESCTTHHHHHHT---------------TSTTSCBTTB
T ss_pred             CCHHHHHHHHHHHCCcceEEEEEEecCCCC----ccceEEEEEECCHHHHHHHHH---------------HcCCCeECCE
Confidence            34678999999999  99999998765421    234678999999999999999               9999999999


Q ss_pred             EEEEEEec
Q psy2134          86 MVRAELYD   93 (104)
Q Consensus        86 ~V~a~~yd   93 (104)
                      .|.+.+-.
T Consensus       141 ~l~V~~a~  148 (229)
T 3q2s_C          141 NPVVTPVN  148 (229)
T ss_dssp             CCEEEECC
T ss_pred             EeEEEECC
Confidence            99998754

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.19  E-value=9.1e-06  Score=52.21  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=51.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++|| |.+|.|...+....   .-.+-.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        27 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~g---~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l   86 (104)
T 1wi8_A           27 VTEESIKEFFRGLN-ISAVRLPREPSNPE---RLKGFGYAEFEDLDSLLSALS----------------LNEESLGNKRI   86 (104)
T ss_dssp             CCHHHHHHHTTTSC-EEEEECCBCSSCTT---SBCSCEEEEESSHHHHHHHHG----------------GGTCEETTEEC
T ss_pred             CCHHHHHHHHHHCC-ceEEEEecCCCCCC---CcCeEEEEEECCHHHHHHHHh----------------cCCCEeCCcEE
Confidence            34678999999999 99999987654211   123458999999999999983                55777789999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-...
T Consensus        87 ~V~~a~~~   94 (104)
T 1wi8_A           87 RVDVADQA   94 (104)
T ss_dssp             EEEECCCC
T ss_pred             EEEEccCC
Confidence            98876553

>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A

Probab=98.17  E-value=2.9e-06  Score=61.47  Aligned_cols=61  Identities=25%  Similarity=0.288  Sum_probs=53.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|...+.         +-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        48 te~~L~~~F~~~G~i~~v~i~~~~~---------g~afV~F~~~~~A~~Ai~---------------~l~g~~~~g~~l~  103 (229)
T 2adc_A           48 TPQSLFILFGVYGDVQRVKILFNKK---------ENALVQMADGNQAQLAMS---------------HLNGHKLHGKPIR  103 (229)
T ss_dssp             CHHHHHHHHHHHTCEEEEEECCTTS---------CCEEEEESCHHHHHHHHH---------------HHTTCBCSSSBCE
T ss_pred             CHHHHHHHHHhCCCeEEEEEEECCC---------CEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence            4578888899999999999987542         348999999999999999               8999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.+-.
T Consensus       104 v~~a~  108 (229)
T 2adc_A          104 ITLSK  108 (229)
T ss_dssp             EECCS
T ss_pred             EEEec
Confidence            98764

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=98.17  E-value=1.7e-06  Score=60.33  Aligned_cols=62  Identities=24%  Similarity=0.290  Sum_probs=53.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||.|.+|.|...+.         +-.||+|.+.++|.+|+.               .|||..+.|+.+.
T Consensus        17 ~~~~l~~~F~~~G~i~~v~i~~~~~---------g~afV~f~~~~~a~~A~~---------------~l~~~~~~g~~l~   72 (198)
T 1qm9_A           17 TPQSLFILFGVYGDVQRVKILFNKK---------ENALVQMADGNQAQLAMS---------------HLNGHKLHGKPIR   72 (198)
T ss_dssp             CHHHHHHHHHTTCCCSEEECSTTCS---------SCCEEECTTTHHHHHHHH---------------HHTTCCCSSCCCE
T ss_pred             CHHHHHHHHHhcCCEEEEEEEeCCC---------CEEEEEECCHHHHHHHHH---------------HhCCCeecCeEEE
Confidence            3578888899999999998877542         247999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        73 v~~a~~   78 (198)
T 1qm9_A           73 ITLSKH   78 (198)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            987643

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=98.17  E-value=4.2e-06  Score=52.80  Aligned_cols=63  Identities=16%  Similarity=0.137  Sum_probs=50.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.|..+  ...       ....+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        28 ~t~~~l~~~F~~~g~v~~~--~~~-------~~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~l   83 (96)
T 1fjc_A           28 ITEDELKEVFEDALEIRLV--SQD-------GKSKGIAYIEFKSEADAEKNLE---------------EKQGAEIDGRSV   83 (96)
T ss_dssp             CCHHHHHHHHCSEEEECCE--EET-------TEEEEEEEEEESSHHHHHHHHH---------------HTTEEEETTEEE
T ss_pred             CCHHHHHHHHhhCCcEEEe--CCC-------CCcceEEEEEECCHHHHHHHHH---------------HhCCCEECCeEE
Confidence            3467888889999998764  111       1234679999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-.+
T Consensus        84 ~v~~a~~   90 (96)
T 1fjc_A           84 SLYYTGE   90 (96)
T ss_dssp             EEEECSS
T ss_pred             EEEEcCC
Confidence            9987643

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=98.15  E-value=6.5e-06  Score=55.79  Aligned_cols=64  Identities=14%  Similarity=0.135  Sum_probs=51.4

Q ss_pred             eehhHHHHHhhhCCceeEE--------EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcC
Q psy2134           8 VIYNEKQSDDEAYGQVEKV--------VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNG   79 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV--------~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnG   79 (104)
                      .-.+++++-+++||.|..+        .+.....       ..+-.||.|.+.++|.+|+.               .|||
T Consensus        57 ~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~-------~~g~afV~f~~~~~A~~Ai~---------------~lng  114 (143)
T 3egn_A           57 VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGR-------MKGQAFIGLPNEKAAAKALK---------------EANG  114 (143)
T ss_dssp             CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETT-------TEEEEEEECSSHHHHHHHHH---------------HHTT
T ss_pred             CCHHHHHHHHHHhCCcccccccceeeEEeccCCC-------cccEEEEEeCCHHHHHHHHH---------------HhCC
Confidence            3467888899999998763        3333222       34679999999999999999               9999


Q ss_pred             ceeCCeEEEEEEec
Q psy2134          80 RFFAGRMVRAELYD   93 (104)
Q Consensus        80 R~F~GR~V~a~~yd   93 (104)
                      ..+.|+.|.+.+-.
T Consensus       115 ~~~~g~~l~V~~a~  128 (143)
T 3egn_A          115 YVLFGKPMVVQFAR  128 (143)
T ss_dssp             BEETTEECEEEECC
T ss_pred             CEeCCcEEEEEECC
Confidence            99999999998763

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=98.12  E-value=2.1e-05  Score=53.97  Aligned_cols=65  Identities=18%  Similarity=0.240  Sum_probs=53.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               . +|..+.|+.+.
T Consensus        26 te~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~A~~A~~---------------~-~~~~~~g~~l~   85 (196)
T 1l3k_A           26 TDESLRSHFEQWGTLTDCVVMRDPNTK----RSRGFGFVTYATVEEVDAAMN---------------A-RPHKVDGRVVE   85 (196)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------T-CSCEETTEECE
T ss_pred             CHHHHHHHHHhCCCEEEEEEEEcCCCC----CccceEEEEeCCHHHHHHHHh---------------c-CCCEECCEEee
Confidence            467889999999999999998765421    234678999999999999999               5 78889999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      ..+..
T Consensus        86 v~~~~   90 (196)
T 1l3k_A           86 PKRAV   90 (196)
T ss_dssp             EEECC
T ss_pred             eeccc
Confidence            88754

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.11  E-value=6.1e-06  Score=54.41  Aligned_cols=67  Identities=10%  Similarity=0.081  Sum_probs=53.6

Q ss_pred             eehhHHHHHhhhCCce-eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQV-EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V-~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-++|+++-+++||.| .+|.|...+..     ...+-.||+|.+.++|.+|+.               . ||..+.||.
T Consensus        27 ~t~~~l~~~F~~~g~v~~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~---------------~-~~~~~~gr~   85 (114)
T 2cpy_A           27 ITKMDVLQFLEGIPVDENAVHVLVDNNG-----QGLGQALVQFKNEDDARKSER---------------L-HRKKLNGRE   85 (114)
T ss_dssp             SCHHHHHHHTTTSCCCSTTEEECCCTTS-----SCSSCEEEECSSHHHHHHHGG---------------G-CSEEETTEE
T ss_pred             CCHHHHHHHHHhCCCcCCeEEEEECCCC-----CcceEEEEEECCHHHHHHHHH---------------h-CCCccCCeE
Confidence            3467888889999999 78888765421     123468999999999999998               7 999999999


Q ss_pred             EEEEEeccc
Q psy2134          87 VRAELYDQS   95 (104)
Q Consensus        87 V~a~~yd~~   95 (104)
                      |.+.+-...
T Consensus        86 i~v~~a~~~   94 (114)
T 2cpy_A           86 AFVHVVTLE   94 (114)
T ss_dssp             EEEEEECHH
T ss_pred             EEEEECCHH
Confidence            999876543

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=98.10  E-value=3.8e-06  Score=54.62  Aligned_cols=65  Identities=15%  Similarity=0.143  Sum_probs=50.9

Q ss_pred             eehhHHHHHhhhCCce----eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           8 VIYNEKQSDDEAYGQV----EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V----~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      .-++|+++-+++||.|    ..+.+... .       ..+-.||+|.+.++|.+|+.               .|||..+.
T Consensus        37 ~t~~~l~~~f~~~G~v~~~~~~~~~~~g-~-------~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~   93 (115)
T 2cpx_A           37 VTERDLVSLFARFQEKKGPPIQFRMMTG-R-------MRGQAFITFPNKEIAWQALH---------------LVNGYKLY   93 (115)
T ss_dssp             CCHHHHHHHTHHHHHSSSSCCEEEEECS-S-------SCSEEEEECSSHHHHHHHHH---------------HSTTCBCS
T ss_pred             CCHHHHHHHHHHhCCccceEEEEEcCCC-c-------cceEEEEEECCHHHHHHHHH---------------HhCCCEeC
Confidence            3467888889999999    44444411 1       13468999999999999999               99999999


Q ss_pred             CeEEEEEEeccc
Q psy2134          84 GRMVRAELYDQS   95 (104)
Q Consensus        84 GR~V~a~~yd~~   95 (104)
                      |+.|.+.+-...
T Consensus        94 g~~l~v~~a~~~  105 (115)
T 2cpx_A           94 GKILVIEFGKNK  105 (115)
T ss_dssp             SCBCEEEECCCC
T ss_pred             CcEEEEEEccCC
Confidence            999999986543

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=98.09  E-value=4.8e-06  Score=53.63  Aligned_cols=65  Identities=15%  Similarity=0.145  Sum_probs=47.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++|| |.+|.|....... .  ...+-.||+|.+.++|.+|+ .|               ||..|.||.|.
T Consensus        32 t~~~l~~~F~~~G-i~~v~i~~~~~~~-g--~~~g~afV~f~~~~~a~~Ai-~l---------------~g~~~~g~~l~   91 (100)
T 2j76_E           32 TEESIKEFFRGLN-ISAVRLPREPSNP-E--RLKGFGYAEFEDLDSLLSAL-SL---------------NEESLGNRRIR   91 (100)
T ss_dssp             SSSHHHHHSCSSC-EEEEECSCCTTTT-C--CCCSCEEEEECCHHHHHHHH-HT---------------TTCCBTTBCCC
T ss_pred             CHHHHHHHHHhcC-CeEEEEEecCCcC-C--ccCeEEEEEECCHHHHHHHH-hc---------------CCCEECCeEEE
Confidence            3578888999999 9999987754211 1  12346899999999999999 44               45556677777


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.+-.
T Consensus        92 V~~a~   96 (100)
T 2j76_E           92 VDVAD   96 (100)
T ss_dssp             CEECC
T ss_pred             EEecc
Confidence            66543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.07  E-value=6.1e-06  Score=63.44  Aligned_cols=60  Identities=18%  Similarity=0.260  Sum_probs=51.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee------
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF------   82 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F------   82 (104)
                      .++++++..++||.|++|.|...+          +-.||+|.+.++|+.|+.               +|||+.+      
T Consensus       156 tEe~L~~~F~~fG~I~~v~v~~~k----------G~AFV~F~~~~~Ae~A~~---------------am~g~~l~~~~~~  210 (240)
T 3u1l_A          156 IESRIRFVFSRLGDIDRIRYVESK----------NCGFVKFKYQANAEFAKE---------------AMSNQTLLLPSDK  210 (240)
T ss_dssp             HHHHHHHHHHTTSCEEEEEEEGGG----------TEEEEEESSHHHHHHHHH---------------HHTTCCCCCTTST
T ss_pred             cHHHHHHHHHccCCEEEEEEECCC----------CEEEEEeCCHHHHHHHHH---------------HhCCCEEeccccc
Confidence            588999999999999999987532          368999999999999999               8888888      


Q ss_pred             ------CCeEEEEEEec
Q psy2134          83 ------AGRMVRAELYD   93 (104)
Q Consensus        83 ------~GR~V~a~~yd   93 (104)
                            .|+.|.+.+-.
T Consensus       211 e~~~~~~gr~L~V~wA~  227 (240)
T 3u1l_A          211 EWDDRREGTGLLVKWAN  227 (240)
T ss_dssp             TGGGGGGSCCCEEEECC
T ss_pred             cccccCCCCEEEEEEcc
Confidence                  88888887643

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=97.34  E-value=4.9e-07  Score=59.47  Aligned_cols=67  Identities=16%  Similarity=0.303  Sum_probs=52.9

Q ss_pred             ehhHHHHHhhhCCceeE--------EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc
Q psy2134           9 IYNEKQSDDEAYGQVEK--------VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR   80 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~k--------V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR   80 (104)
                      -.+|+++-+++||.|..        |.|+..+..    ....+-.||+|.+.++|.+|+.               .|||.
T Consensus        20 t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~----g~~~g~afV~f~~~~~A~~Ai~---------------~l~g~   80 (116)
T 2lcw_A           20 TIESVADYFKQIGIIKTNKKTGQPMINLYTDRET----GKLKGEATVSFDDPPSAKAAID---------------WFDGK   80 (116)
Confidence            35678888999999988        777665332    1123568999999999999999               89999


Q ss_pred             eeCCeEEEEEEecc
Q psy2134          81 FFAGRMVRAELYDQ   94 (104)
Q Consensus        81 ~F~GR~V~a~~yd~   94 (104)
                      .+.|+.|.+.+-..
T Consensus        81 ~~~g~~l~V~~a~~   94 (116)
T 2lcw_A           81 EFSGNPIKVSFATR   94 (116)
Confidence            99999999887543

>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=2.4e-05  Score=49.75  Aligned_cols=64  Identities=14%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++|+.   |.|......    ....+-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        28 t~~~l~~~F~~~~~---~~~~~~~~~----~~~~g~afV~f~~~~~A~~A~~---------------~l~g~~~~g~~l~   85 (102)
T 2fc8_A           28 TEETLKESFDGSVR---ARIVTDRET----GSSKGFGFVDFNSEEDAKAAKE---------------AMEDGEIDGNKVT   85 (102)
T ss_dssp             CHHHHHHTSTTCSE---EEEEECSSS----CSEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHhcCCeE---EEEEecCCC----CCcCcEEEEEECCHHHHHHHHH---------------HhCCCeECCeEEE
Confidence            45778877887754   445443321    1234679999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        86 V~~a~~   91 (102)
T 2fc8_A           86 LDWAKP   91 (102)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            988644

>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.04  E-value=4.9e-05  Score=47.49  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++| .|.+|.|......     ...+..||+|.+.++|.+|+.                |||..+.||.|
T Consensus        22 ~t~~~l~~~F~~~-~i~~v~i~~~~~g-----~~~g~afV~f~~~~~a~~A~~----------------~~g~~~~gr~i   79 (91)
T 2dgw_A           22 VTEKNVMEFLAPL-KPVAIRIVRNAHG-----NKTGYIFVDFSNEEEVKQALK----------------CNREYMGGRYI   79 (91)
T ss_dssp             CCHHHHHHHHTTS-CCSEEEEEECTTS-----CEEEEEEEECSSHHHHHHHHH----------------SCSEEETTEEE
T ss_pred             CCHHHHHHHHhhC-CceEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH----------------hCCceeCCcEE
Confidence            3467888889999 9999999876221     235679999999999999987                56777788999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ...+-..
T Consensus        80 ~v~~a~~   86 (91)
T 2dgw_A           80 EVFREKS   86 (91)
T ss_dssp             EEEEESS
T ss_pred             EEEECCc
Confidence            8887643

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=98.03  E-value=3e-05  Score=56.18  Aligned_cols=62  Identities=15%  Similarity=0.118  Sum_probs=51.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+++++-+++||.|..|.|+.....     ...|-.||+|++.++|.+|+.               .++. .|.||.|.
T Consensus       122 t~~~L~~~F~~~G~v~~v~i~~~~~~-----~~kG~aFVeF~~~e~A~~A~~---------------~~~~-~~~Gr~l~  180 (193)
T 2voo_A          122 TLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE---------------TPGQ-KYKETDLL  180 (193)
T ss_dssp             CHHHHHHHHTTSCCEEEEEEEECTTC-----CEEEEEEEEESSHHHHHHHHH---------------CTTC-EETTEECE
T ss_pred             CHHHHHHHHhcCCCEEEEEEEECCCC-----CcccEEEEEECCHHHHHHHHH---------------hCCC-eECCEEEE
Confidence            45788888999999999999875431     235789999999999999999               7765 89999998


Q ss_pred             EEE
Q psy2134          89 AEL   91 (104)
Q Consensus        89 a~~   91 (104)
                      +..
T Consensus       181 V~~  183 (193)
T 2voo_A          181 ILF  183 (193)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=98.02  E-value=1.6e-06  Score=58.47  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=52.9

Q ss_pred             ehhHHHHHhhhCCceeE--EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc----ee
Q psy2134           9 IYNEKQSDDEAYGQVEK--VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR----FF   82 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~k--V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR----~F   82 (104)
                      -++|+++-+++||.|..  |.|...+...    ...+-.||+|.+. +|.+|+.               .|||.    .+
T Consensus        36 te~~L~~~F~~~G~v~~~~v~i~~d~~tg----~~rG~aFV~f~~~-~a~~Ai~---------------~l~g~~~~~~~   95 (131)
T 2m2b_A           36 TMDSILGALAPYAVLSSSNVRVIKDKQTQ----LNRGFAFIQLSTI-EAAQLLQ---------------ILQALHPPLTI   95 (131)
T ss_dssp             CSHHHHHHHGGGCCCCTTTEECCBCSSSS----SBCSCEEEECCHH-HHHHHHH---------------HHTTCCCSCCG
T ss_pred             CHHHHHHHHHHhCCcceeeEEEEEcCCCC----CcceEEEEEECCH-HHHHHHH---------------HhcCCCCCccC
Confidence            46789999999999966  8887765321    1235689999999 9999999               88898    88


Q ss_pred             CCeEEEEEEecc
Q psy2134          83 AGRMVRAELYDQ   94 (104)
Q Consensus        83 ~GR~V~a~~yd~   94 (104)
                      .||.|.+.+-..
T Consensus        96 ~gr~l~V~~a~~  107 (131)
T 2m2b_A           96 DGKTINVEFAKG  107 (131)
T ss_dssp             GGCCCCCEECCC
T ss_pred             CCEEEEEEECCC
Confidence            999998887644

>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=1.5e-05  Score=53.36  Aligned_cols=59  Identities=19%  Similarity=0.215  Sum_probs=47.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -++++++-+++||.|..|.|...+         .+-.||+|.+.++|..|+.               .++|  +.|+.++
T Consensus        30 te~~L~~~F~~~G~V~~v~i~~~~---------rGfaFVeF~~~~~A~~Ai~---------------~~~~--~~g~~l~   83 (100)
T 2d9o_A           30 SKDVLLRLLQKYGEVLNLVLSSKK---------PGTAVVEFATVKAAELAVQ---------------NEVG--LVDNPLK   83 (100)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEESSS---------SSEEEEEESCHHHHHHHHH---------------TCCB--CSSSBCE
T ss_pred             CHHHHHHHHHhcCCEEEEEEccCC---------CCEEEEEECCHHHHHHHHH---------------hcCC--CCCCeEE
Confidence            367889889999999999987422         2468999999999999999               6555  5688888


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      ..+-.
T Consensus        84 V~~a~   88 (100)
T 2d9o_A           84 ISWLE   88 (100)
T ss_dssp             EECSS
T ss_pred             EEEcc
Confidence            77653

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=98.01  E-value=2.4e-05  Score=57.74  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=52.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.+|.|...+          +-.||+|.+.++|.+|+.               .|||..+.|+.+.
T Consensus        35 te~~l~~~F~~~G~i~~v~i~~~k----------g~afV~f~~~~~A~~A~~---------------~l~g~~i~g~~l~   89 (261)
T 3sde_A           35 TEEDFKRLFERYGEPSEVFINRDR----------GFGFIRLESRTLAEIAKA---------------ELDGTILKSRPLR   89 (261)
T ss_dssp             CHHHHHHHTGGGCCCSEEEEETTT----------TEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhcCCEEEEEEeCCC----------cEEEEEECCHHHHHHHHH---------------HcCCcEECCceeE
Confidence            467889899999999999986532          358999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        90 v~~a~~   95 (261)
T 3sde_A           90 IRFATH   95 (261)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            987643

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=5.3e-06  Score=57.07  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=48.1

Q ss_pred             eehhHHHHHhhhC-CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAY-GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~ky-G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .|.+.+++=+++| |+|.+|.             + |..||.|.+.++|.+|++               .|||..+.||.
T Consensus        25 ~lk~~L~~lF~~yGG~Vl~Vt-------------g-G~AfV~F~~~esA~~A~~---------------~l~G~~l~gr~   75 (96)
T 2diu_A           25 SVSNRLRRLSDNCGGKVLSIT-------------G-CSAILRFINQDSAERAQK---------------RMENEDVFGNR   75 (96)
T ss_dssp             HHHHHHHHHHHTTTCCEEECC-------------T-TCEEEEESSHHHHHHHHH---------------HHTTCCSSSSC
T ss_pred             HHHHHHHHHHHHcCCeeEEEe-------------c-CEEEEEECCHHHHHHHHH---------------HhcCCccCCce
Confidence            4566677889999 5998861             0 458999999999999999               99999999999


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |+..|-.
T Consensus        76 i~v~~A~   82 (96)
T 2diu_A           76 IIVSFTP   82 (96)
T ss_dssp             CEEESSC
T ss_pred             EEEEecC
Confidence            9998754

>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A

Probab=97.99  E-value=3.1e-05  Score=47.65  Aligned_cols=56  Identities=25%  Similarity=0.303  Sum_probs=44.6

Q ss_pred             ehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh
Q psy2134           9 IYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL   77 (104)
Q Consensus         9 i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L   77 (104)
                      =.+|+++-+++|    |       .|.++.|..++          +-.||+|.+.++|.+|+ .               |
T Consensus        19 t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k----------g~afV~f~~~~~a~~A~-~---------------l   72 (87)
T 2hzc_A           19 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAM-A---------------F   72 (87)
T ss_dssp             CHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS----------SEEEEEESSHHHHHHHG-G---------------G
T ss_pred             CHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC----------cEEEEEcCCHHHHHHHH-h---------------c
Confidence            467888889999    8       99998887542          46899999999999998 3               5


Q ss_pred             cCceeCCeEEEEE
Q psy2134          78 NGRFFAGRMVRAE   90 (104)
Q Consensus        78 nGR~F~GR~V~a~   90 (104)
                      ||..+.||.+...
T Consensus        73 ~g~~~~g~~l~V~   85 (87)
T 2hzc_A           73 DGIIFQGQSLKIR   85 (87)
T ss_dssp             TTCEETTEECEEE
T ss_pred             CCCEECCeEEEEe
Confidence            5666778877764

>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.99  E-value=2.4e-05  Score=52.22  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=53.3

Q ss_pred             eehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134           8 VIYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G   84 (104)
                      .-++|+++-+++||.   |..|.|...+..     .-.+-.||+|.+.++|.+|+.                |||..+.|
T Consensus        29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~----------------~~g~~~~g   87 (118)
T 2db1_A           29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREG-----RQSGEAFVELESEDDVKLALK----------------KDRESMGH   87 (118)
T ss_dssp             CCHHHHHHHTTTSCBTTGGGGEEEEECSSS-----CEEEEEEEEBSSHHHHHHHGG----------------GTTEEETT
T ss_pred             CCHHHHHHHHHHcCCccCceeEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCeECC
Confidence            446789999999999   889988765431     235679999999999999987                57888899


Q ss_pred             eEEEEEEeccc
Q psy2134          85 RMVRAELYDQS   95 (104)
Q Consensus        85 R~V~a~~yd~~   95 (104)
                      |.|....-...
T Consensus        88 r~i~V~~a~~~   98 (118)
T 2db1_A           88 RYIEVFKSHRT   98 (118)
T ss_dssp             EEEEEEEECHH
T ss_pred             eEEEEEECCHH
Confidence            99998765443

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=97.98  E-value=1.9e-05  Score=58.18  Aligned_cols=67  Identities=9%  Similarity=0.099  Sum_probs=52.7

Q ss_pred             eehhHHHHHhhhCC-ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYG-QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG-~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-.+++++-+++|| .|.+|.|......     ...+-.||+|.+.++|.+|+.               .|||..+.|+.
T Consensus       129 ~t~~~l~~~f~~~G~~i~~v~i~~~~~~-----~~~g~afV~f~~~~~a~~A~~---------------~l~g~~~~g~~  188 (292)
T 2ghp_A          129 YTQRNIRDLLQDINVVALSIRLPSLRFN-----TSRRFAYIDVTSKEDARYCVE---------------KLNGLKIEGYT  188 (292)
T ss_dssp             CCHHHHHHHHHHTTCCCCEEECC------------CCEEEEECSSHHHHHHHHH---------------HHTTCEETTEE
T ss_pred             CCHHHHHHHHHHhCCCeEEEEEEeCCCC-----CcceEEEEEECCHHHHHHHHH---------------HhCCCEeCCcE
Confidence            34678999999999 9999988765431     123568999999999999999               99999999999


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      |...+-..
T Consensus       189 l~v~~a~~  196 (292)
T 2ghp_A          189 LVTKVSNP  196 (292)
T ss_dssp             CEEEECCC
T ss_pred             EEEEECCC
Confidence            99987643

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=97.97  E-value=2.7e-05  Score=57.54  Aligned_cols=67  Identities=27%  Similarity=0.303  Sum_probs=52.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeC---
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFA---   83 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~---   83 (104)
                      .-.+++++-+++||.|.+|.|..+...     ...+..||+|.+.++|.+|+.               .| +|.++.   
T Consensus       108 ~t~~~l~~~F~~~G~i~~v~i~~~~~g-----~~~g~afV~f~~~~~A~~A~~---------------~l~~~~~~~~~~  167 (261)
T 3sde_A          108 VSNELLEQAFSQFGPVEKAVVVVDDRG-----RATGKGFVEFAAKPPARKALE---------------RCGDGAFLLTTT  167 (261)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEEETTS-----CEEEEEEEEESSHHHHHHHHH---------------HHHHSCEESSSS
T ss_pred             CCHHHHHHHHHhcCCeEEEEeeeCCCC-----CcCcEEEEEeCCHHHHHHHHH---------------HhcCCeEEecCC
Confidence            346789999999999999999876321     235678999999999999999               77 444554   


Q ss_pred             CeEEEEEEecc
Q psy2134          84 GRMVRAELYDQ   94 (104)
Q Consensus        84 GR~V~a~~yd~   94 (104)
                      ||.|.+.+...
T Consensus       168 ~r~i~v~~~~~  178 (261)
T 3sde_A          168 PRPVIVEPMEQ  178 (261)
T ss_dssp             CCBCEEEECCC
T ss_pred             CceEEEeeccc
Confidence            88888887754

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=3.5e-05  Score=48.70  Aligned_cols=62  Identities=16%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|.+| +.....       +. -.||+|.+.++|.+|+.                |||..+.|+.|
T Consensus        20 ~t~~~l~~~F~~~G~v~~v-~~~~~~-------g~-~afV~f~~~~~a~~ai~----------------l~g~~~~g~~l   74 (94)
T 2e5g_A           20 VDSAQLSEYFLAFGPVASV-VMDKDK-------GV-FAIVEMGDVGAREAVLS----------------QSQHSLGGHRL   74 (94)
T ss_dssp             CCHHHHHHHGGGTSCEEEE-EECSSS-------CC-EEEEEESSHHHHHHHHT----------------CSCCEETTEEC
T ss_pred             CCHHHHHHHHHhcCCeEEE-EEcCCC-------Cc-EEEEEECCHHHHHHHHh----------------cCCeEECCEEE
Confidence            3467889999999999997 333221       11 68999999999999987                56777788888


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+-..
T Consensus        75 ~V~~a~~   81 (94)
T 2e5g_A           75 RVRPREQ   81 (94)
T ss_dssp             CCBCSCC
T ss_pred             EEEECCc
Confidence            8765443

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=97.92  E-value=3.8e-05  Score=51.42  Aligned_cols=53  Identities=21%  Similarity=0.256  Sum_probs=41.2

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhc
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALN   63 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~   63 (104)
                      =++|+++-+++||.|.+|.|...+.+..  ....+-.||+|.+.++|.+|+..||
T Consensus        16 te~~l~~~F~~~G~i~~v~i~~~~~~~~--~~~~g~afV~f~~~~~A~~A~~~l~   68 (175)
T 3nmr_A           16 SEKDLRELFEQYGAVYEINVLRDRSQNP--PQSKGCCFVTFYTRKAALEAQNALH   68 (175)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEEECSSSS--CEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhCCCEEEEEEEecCCCCC--CCcceEEEEEECCHHHHHHHHHHhc
Confidence            3678888899999999999987654310  1235678999999999999999333

>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=6e-05  Score=51.30  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=49.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .|..++....+.||.|..|+|..+            +.||+|.+.++|.+|+.                |||-.+.||.+
T Consensus        27 ~l~~~L~~~F~~~G~Vi~vr~~~d------------~~fVtF~d~~sAlaAi~----------------mnG~~v~Gr~L   78 (91)
T 2dnr_A           27 ALIDELLQQFASFGEVILIRFVED------------KMWVTFLEGSSALNVLS----------------LNGKELLNRTI   78 (91)
T ss_dssp             HHHHHHHHHHHTTCCEEEEEECSS------------SEEEEESSHHHHHHGGG----------------GTTCEETTEEE
T ss_pred             HHHHHHHHHHHhCCCeEEEEEecC------------CEEEEECChHHHHHHHh----------------cCCeEeCCeEE
Confidence            467789999999999999988763            26999999888888776                88999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      +..+=.+
T Consensus        79 kV~lkt~   85 (91)
T 2dnr_A           79 TIALKSP   85 (91)
T ss_dssp             EEEECCC
T ss_pred             EEEeCCC
Confidence            9887543

>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=6.1e-05  Score=50.59  Aligned_cols=63  Identities=16%  Similarity=0.078  Sum_probs=49.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -++|+++-++.| .|.+|.|......     .-.+-.||+|.+.++|.+|+.                |||..+.||.|.
T Consensus        29 te~dl~~~F~~~-~v~~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~----------------~~~~~~~gr~i~   86 (109)
T 2dnn_A           29 MENDVRDFFHGL-RVDAVHLLKDHVG-----RNNGNGLVKFLSPQDTFEALK----------------RNRMLMIQRYVE   86 (109)
T ss_dssp             CHHHHHHHTTTS-CCCEEEECCCTTC-----CCCSEEEEECSSHHHHHHHHH----------------TTTEEETTEEEE
T ss_pred             CHHHHHHHhccC-CeeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCeECCeEEE
Confidence            467899999999 8999988765431     123568999999999999986                578888899888


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      ...-.
T Consensus        87 V~~a~   91 (109)
T 2dnn_A           87 VSPAT   91 (109)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            75443

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.84  E-value=5.2e-05  Score=49.58  Aligned_cols=65  Identities=17%  Similarity=0.048  Sum_probs=49.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.| +|.|...+..     .-.+-.||+|++.++|.+|+.               . ||..+.||.|
T Consensus        27 ~te~~l~~~F~~~G~~-~v~i~~d~~g-----~~~G~afV~F~~~~~a~~Al~---------------~-~~~~~~gr~i   84 (102)
T 1wez_A           27 ATENDIYNFFSPLNPM-RVHIEIGPDG-----RVTGEADVEFATHEDAVAAMA---------------K-DKANMQHRYV   84 (102)
T ss_dssp             CCHHHHHHSSCSCCCS-EEEEEESSSS-----CEEEEEEEECSSSHHHHHHHT---------------T-SSCCSSSSCC
T ss_pred             CCHHHHHHHHHHcCce-EEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------h-CCCeECCcEE
Confidence            3468888889999955 8888775421     234678999999999999997               4 7777788888


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ....-..
T Consensus        85 ~V~~~~~   91 (102)
T 1wez_A           85 ELFLNST   91 (102)
T ss_dssp             EEEEECC
T ss_pred             EEEECCC
Confidence            8765443

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=97.81  E-value=5.7e-05  Score=60.72  Aligned_cols=47  Identities=23%  Similarity=0.239  Sum_probs=38.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhcc
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNG   64 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~   64 (104)
                      .=++|+++.+++||.|.+|.|+..          .+-.||+|++.++|++|+++|||
T Consensus        32 ~te~~L~~~F~~~G~V~~v~~~~~----------kgfaFV~f~~~~~A~~Ai~~lnG   78 (345)
T 3tht_A           32 VSRNQLLPVLEKCGLVDALLMPPN----------KPYSFARYRTTEESKRAYVTLNG   78 (345)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCTT----------CSEEEEEESSHHHHHHHHHHTTT
T ss_pred             CCHHHHHHHHHhcCCeEEEEEeCC----------CCEEEEEECCHHHHHHHHHHhCC
Confidence            446889999999999999887641          24789999999999999993333

>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A

Probab=97.79  E-value=4.4e-05  Score=53.29  Aligned_cols=66  Identities=9%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             eehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134           8 VIYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G   84 (104)
                      .-++|+++-++.||.   |.+|.|...+..     ...+-.||+|++.++|.+|+.                |||..+.|
T Consensus        56 ~te~dL~~~F~~~G~v~~v~~v~i~~d~~g-----~srG~aFV~F~~~e~a~~Al~----------------~~g~~l~g  114 (136)
T 2hgl_A           56 CSVEDVQNFLSDCTIHDGAAGVHFIYTREG-----RQSGEAFVELGSEDDVKMALK----------------KDRESMGH  114 (136)
T ss_dssp             CCHHHHHHHTTTCCCSSSSTTEEEEECSSS-----CEEEEEEEECSSHHHHHHHHT----------------TTEEESSS
T ss_pred             CCHHHHHHHHHHhCCcCceeEEEEEECCCC-----CCCeEEEEEECCHHHHHHHHh----------------cCCCEECC
Confidence            446789999999999   888888765431     235678999999999999987                56667778


Q ss_pred             eEEEEEEecc
Q psy2134          85 RMVRAELYDQ   94 (104)
Q Consensus        85 R~V~a~~yd~   94 (104)
                      |.|....-..
T Consensus       115 r~i~V~~a~~  124 (136)
T 2hgl_A          115 RYIEVFKSHR  124 (136)
T ss_dssp             SEEEEEECCH
T ss_pred             EEEEEEECCh
Confidence            8888765443

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=97.77  E-value=6.4e-05  Score=54.68  Aligned_cols=56  Identities=11%  Similarity=0.013  Sum_probs=46.3

Q ss_pred             ehhHHHHHhhhCCce--eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           9 IYNEKQSDDEAYGQV--EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V--~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      =.+++++-++.||.|  .+|.|+.....      ..+--||+|++.++|.+|+.               .|||..+.|+
T Consensus       136 t~~~L~~~F~~~G~v~~~~v~~~~~~~~------~~g~gfV~f~~~~~A~~Ai~---------------~lng~~~~g~  193 (205)
T 3tyt_A          136 TEENFFEICDELGVKRPTSVKVFSGKSE------RSSSGLLEWDSKSDALETLG---------------FLNHYQMKNP  193 (205)
T ss_dssp             CHHHHHHHHHHHTCCCCSEEEECSCCSS------SSEEEEEECSSHHHHHHHHH---------------HHTTCEECCS
T ss_pred             CHHHHHHHHHhcCCcceEEEEEEcCCCC------CceEEEEEeCCHHHHHHHHH---------------HhCCCCccCC
Confidence            367899999999999  89998875421      12568999999999999999               8888888887

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=97.77  E-value=7.1e-05  Score=47.67  Aligned_cols=48  Identities=23%  Similarity=0.171  Sum_probs=39.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .-++|+++-+++||.|.+|.|.....     ....+-.||+|.+.++|.+|+.
T Consensus        21 ~t~~~l~~~F~~~G~i~~v~i~~~~~-----g~~~g~afV~f~~~~~a~~Ai~   68 (102)
T 2xs2_A           21 MDETEIRSFFARYGSVKEVKIITDRT-----GVSKGYGFVSFYNDVDVQKIVE   68 (102)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTT-----SCEEEEEEEEESSCCCHHHHTT
T ss_pred             CCHHHHHHHHHhCCCeEEEEEEECCC-----CCccceEEEEECCHHHHHHHHh
Confidence            34678888899999999999987652     1235678999999999999887

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.73  E-value=3.1e-05  Score=51.53  Aligned_cols=68  Identities=10%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++||.|..+.+......    ..-.+-.||+|.+.++|.+|+.                |||..+.||.|
T Consensus        37 ~te~~l~~~F~~~G~v~~~~~~~~~~~----g~~~G~afV~F~~~~~a~~Al~----------------~~g~~~~gr~i   96 (124)
T 1wel_A           37 AENKHVIDFFKKLDIVEDSIYIAYGPN----GKATGEGFVEFRNEADYKAALC----------------RHKQYMGNRFI   96 (124)
T ss_dssp             CCHHHHHHHSCSSCBCTTTCEEEECTT----SSEEEEEEEEBSSSHHHHHHHT----------------SCSBCSTTSCB
T ss_pred             CCHHHHHHHHHhcCCccceEEEEECCC----CCCCeEEEEEECCHHHHHHHHH----------------hCCCeECCcEE
Confidence            346788988999999987333322221    1235679999999999999998                46666678888


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      ...+-...
T Consensus        97 ~V~~a~~~  104 (124)
T 1wel_A           97 QVHPITKK  104 (124)
T ss_dssp             EEEEECHH
T ss_pred             EEEECCHH
Confidence            88765543

>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=5.2e-05  Score=52.12  Aligned_cols=65  Identities=12%  Similarity=0.020  Sum_probs=49.9

Q ss_pred             eehhHHHHHhhhCCce----eEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           8 VIYNEKQSDDEAYGQV----EKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V----~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      .=++||++-+++||.|    ..|.|......     .-.+-.||+|++.++|.+|+.               . ||..+.
T Consensus        35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~g-----r~~G~aFV~F~~~~~A~~Al~---------------~-~~~~l~   93 (123)
T 2dha_A           35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDG-----RPTGDAFVLFACEEYAQNALR---------------K-HKDLLG   93 (123)
T ss_dssp             CCHHHHHHHHHTTSCCTTGGGGEEEEECTTS-----CEEEEEEECCSSHHHHHHHHT---------------T-TTEESS
T ss_pred             CCHHHHHHHHHhhCCccCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH---------------h-CCCeeC
Confidence            3467899999999986    57878764321     124678999999999999999               6 888888


Q ss_pred             CeEEEEEEec
Q psy2134          84 GRMVRAELYD   93 (104)
Q Consensus        84 GR~V~a~~yd   93 (104)
                      ||.|....-.
T Consensus        94 gR~i~V~~a~  103 (123)
T 2dha_A           94 KRYIELFRST  103 (123)
T ss_dssp             SCEECCEEEC
T ss_pred             CeEEEEEECC
Confidence            8888765443

>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.62  E-value=0.00012  Score=50.20  Aligned_cols=57  Identities=23%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .|..++.+..+.||.|..|+|..+            +.||+|.+.++|.+|+.                |||..+.||.+
T Consensus        36 ~l~~~L~~~F~~~G~Vilvr~v~d------------~~fVtF~d~~sAl~AI~----------------ldG~~v~Gr~L   87 (95)
T 1ufw_A           36 DLRTELMQTLGSYGTIVLVRINQG------------QMLVTFADSHSALSVLD----------------VDGMKVKGRAV   87 (95)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETT------------EEEEECSCSHHHHHHHH----------------GGGSEETTEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEEecC------------cEEEEEcChHHHHHHHh----------------cCCeeeCCeEE
Confidence            356778888999999999988763            38999999999999987                78999999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      +..+=
T Consensus        88 ~V~~k   92 (95)
T 1ufw_A           88 KISGP   92 (95)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            98753

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=97.61  E-value=0.00028  Score=44.86  Aligned_cols=57  Identities=26%  Similarity=0.187  Sum_probs=42.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce--eCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF--FAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~--F~GR~   86 (104)
                      =++++++-+++||.|.+|.|...+         .|-.||+|++.++|.+                   |+|..  +.|+.
T Consensus        24 te~~L~~~F~~~G~i~~v~i~~~s---------rGfaFV~F~~~~~A~~-------------------~~~~~~~~~g~~   75 (89)
T 3d2w_A           24 TAEELQQFFCQYGEVVDVFIPKPF---------RAFAFVTFADDKVAQS-------------------LCGEDLIIKGIS   75 (89)
T ss_dssp             CHHHHHHHHTTTSCEEEEECCSSC---------CSEEEEEESCHHHHHH-------------------HTTCEEEETTEE
T ss_pred             CHHHHHHHHhccCCEEEEEEeeCC---------CCEEEEEECCHHHHHH-------------------HcCCCcccCCEE
Confidence            467899999999999999887642         2457999999999872                   22433  35888


Q ss_pred             EEEEEec
Q psy2134          87 VRAELYD   93 (104)
Q Consensus        87 V~a~~yd   93 (104)
                      |...+-.
T Consensus        76 v~v~~a~   82 (89)
T 3d2w_A           76 VHISNAE   82 (89)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            8877643

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=97.59  E-value=0.00017  Score=48.21  Aligned_cols=49  Identities=16%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .=++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|..|+.
T Consensus        15 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g----~~~g~afV~f~~~~~a~~A~~   63 (167)
T 2cjk_A           15 TTEDNLREYFGKYGTVTDLKIMKDPATG----RSRGFGFLSFEKPSSVDEVVK   63 (167)
T ss_dssp             CCHHHHHHHHTTTCCEEEEECCCCTTTS----SCCSCEEEEESSTHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCEEEEEEEECCCCC----CccceEEEEEccHHHHHHHHh
Confidence            3467889899999999999987754321    123458999999999999999

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.59  E-value=0.00016  Score=47.54  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc-------
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR-------   80 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR-------   80 (104)
                      .-++|+++-+++||.|. +.+........ .....+-.||+|.+.++|.+|+++||            .|||+       
T Consensus        20 ~te~~L~~~F~~~G~i~-~~~~~~~~~~~-~g~~~G~aFV~f~~~~~a~~Ai~~~~------------~~~G~~~~~~~~   85 (114)
T 2dnl_A           20 IDEDEITASFRRFGPLV-VDWPHKAESKS-YFPPKGYAFLLFQEESSVQALIDACL------------EEDGKLYLCVSS   85 (114)
T ss_dssp             CCHHHHHHHTTTTCCCC-EECTTSSSSCC-CSCTTSEEEECCSSHHHHHHHHHHSE------------EETTEEEEEECC
T ss_pred             CCHHHHHHHHHhcCCEE-EEEeecCCCCC-CCCcccEEEEEECCHHHHHHHHHhhh------------hcCCcEEEeccC
Confidence            44678898999999999 66655433210 00123568999999999999999551            12555       


Q ss_pred             -eeCCeEEEEEEecc
Q psy2134          81 -FFAGRMVRAELYDQ   94 (104)
Q Consensus        81 -~F~GR~V~a~~yd~   94 (104)
                       ...++.+...=|..
T Consensus        86 ~~~~~~~~~v~p~~~  100 (114)
T 2dnl_A           86 PTIKDKPVQIRPWNL  100 (114)
T ss_dssp             SSSCSEEEEEECCCC
T ss_pred             CCcCCCeeeccCCcc
Confidence             45667776664443

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=97.54  E-value=4.3e-05  Score=49.75  Aligned_cols=64  Identities=6%  Similarity=0.019  Sum_probs=46.9

Q ss_pred             ehhHHHHHhhhCCc---eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           9 IYNEKQSDDEAYGQ---VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         9 i~~ev~~Ec~kyG~---V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      -++|+++-++.||.   |.+|.|......     ...+-.||+|.+.++|.+|+. |               ||..+.||
T Consensus        24 te~~l~~~F~~~g~~~~v~~v~i~~~~~g-----~~~G~afV~F~~~~~a~~Al~-~---------------~~~~~~gr   82 (107)
T 2lmi_A           24 TMEDVLNFFSDCRIRNGENGIHFLLNRDG-----KRRGDALIEMESEQDVQKALE-K---------------HRMYMGQR   82 (107)
T ss_dssp             CSHHHHHHTTTSCBTTTTTTEECCCCTTS-----TTCSEEEEEBSSHHHHHHHHT-T---------------TTCCSSSS
T ss_pred             CHHHHHHHHHhcCCcCCcceEEEEECCCC-----CEeeEEEEEECCHHHHHHHHH-h---------------CcceeCCe
Confidence            35788888899888   889888765431     123568999999999999998 4               55556677


Q ss_pred             EEEEEEec
Q psy2134          86 MVRAELYD   93 (104)
Q Consensus        86 ~V~a~~yd   93 (104)
                      .|....-.
T Consensus        83 ~i~V~~a~   90 (107)
T 2lmi_A           83 YVEVYEIN   90 (107)
T ss_dssp             CCCCEECC
T ss_pred             EEEEEECC
Confidence            77665543

>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A

Probab=97.52  E-value=3.9e-05  Score=53.89  Aligned_cols=65  Identities=17%  Similarity=0.021  Sum_probs=47.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+++-+++|| |++|.|...+..     .-.+-.||+|++.++|.+|+.                |||..+.||.|
T Consensus        58 ~te~dL~~~F~~~G-i~~v~i~~d~~g-----~srGfaFV~F~~~e~A~~Al~----------------~~g~~l~gR~i  115 (139)
T 2hgn_A           58 ATENDIYNFFSPLN-PVRVHIEIGPDG-----RVTGEADVEFATHEEAVAAMS----------------KDRANMQHRYI  115 (139)
T ss_dssp             CCHHHHHHHHCSCC-CSEEECCCSSSS-----CSSCCCEEECSHHHHHHHHTT----------------CCSCSSSSCCC
T ss_pred             CCHHHHHHHHHhcC-CeEEEEEECCCC-----CCceEEEEEeCCHHHHHHHHh----------------hCCCEECCEEE
Confidence            45789999999999 668888765431     123457999999999999985                35666667776


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ....-..
T Consensus       116 ~V~~a~~  122 (139)
T 2hgn_A          116 ELFLNST  122 (139)
T ss_dssp             CCEECCC
T ss_pred             EEEECCC
Confidence            6654443

>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00075  Score=49.01  Aligned_cols=70  Identities=14%  Similarity=0.222  Sum_probs=50.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCC----HHH----HHHHHHhhccchhhhhhhhhhhhcC
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSK----MQE----AEYARDALNGRFFAEAEYARDALNG   79 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~----~~~----A~~A~~~~~~r~f~~~~~~~~~LnG   79 (104)
                      +=++++++=.+.||.|.++.+..++.+.    .-.|--||+|.+    +++    |.+|+.             +-.|||
T Consensus        18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg----~slGfgfVef~d~~g~~d~a~kAA~kAi~-------------~~~lng   80 (136)
T 2j8a_A           18 IQDISIKNYFKKYGEISHFEAFNDPNSA----LPLHVYLIKYASSDGKINDAAKAAFSAVR-------------KHESSG   80 (136)
T ss_dssp             CCHHHHHHHHHTTSCCSEEEEEECTTTC----CEEEEEEEECC------CCHHHHHHHHHH-------------HTTTTC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEecCCCC----ceeeEEEEEECCCCCCcchHHHHHHHHHH-------------HhhhcC
Confidence            3467788889999999999999876642    235668999997    544    344433             116899


Q ss_pred             ceeCCeEEEEEEecc
Q psy2134          80 RFFAGRMVRAELYDQ   94 (104)
Q Consensus        80 R~F~GR~V~a~~yd~   94 (104)
                      ..++||.|++.+=+.
T Consensus        81 ~~I~Gr~irV~ln~~   95 (136)
T 2j8a_A           81 CFIMGFKFEVILNKH   95 (136)
T ss_dssp             EEETTEEEEEEECCT
T ss_pred             CeecCcEEEEEECcc
Confidence            999999999986443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=97.35  E-value=0.00079  Score=45.08  Aligned_cols=59  Identities=22%  Similarity=0.260  Sum_probs=45.4

Q ss_pred             eehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhh
Q psy2134           8 VIYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDA   76 (104)
Q Consensus         8 ~i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~   76 (104)
                      .=++|+++-+++|    |       .|.++.+...+          +-.||+|.+.++|.+|+.                
T Consensus        16 ~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~----------g~afV~f~~~~~A~~A~~----------------   69 (172)
T 2g4b_A           16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAMA----------------   69 (172)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT----------TEEEEEESSHHHHHHHGG----------------
T ss_pred             cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC----------CEEEEEeCCHHHHHHHHH----------------
Confidence            3467888888998    7       78887776532          358999999999999984                


Q ss_pred             hcCceeCCeEEEEEEe
Q psy2134          77 LNGRFFAGRMVRAELY   92 (104)
Q Consensus        77 LnGR~F~GR~V~a~~y   92 (104)
                      |||..+.|+.+...+-
T Consensus        70 ~~~~~~~g~~i~v~~~   85 (172)
T 2g4b_A           70 FDGIIFQGQSLKIRRP   85 (172)
T ss_dssp             GTTCEETTEECEEECC
T ss_pred             hCCcEecCceeeecCC
Confidence            5677778888887753

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=97.35  E-value=3e-05  Score=49.33  Aligned_cols=65  Identities=14%  Similarity=0.056  Sum_probs=44.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||.|.. .+......    ....+-.||+|.+.++|.+|+. |               ||..+.|+.|
T Consensus        29 ~t~~~l~~~F~~~G~v~~-~~~~~~~~----g~~~g~afV~f~~~~~a~~A~~-l---------------~g~~~~g~~l   87 (101)
T 1fj7_A           29 KSVAELKVAISELFAKND-LAVVDVRT----GTNRKFGYVDFESAEDLEKALE-L---------------TGLKVFGNEI   87 (101)
T ss_dssp             SCHHHHHHHHHHHHHHHT-CCCCEEEE----ETTTTEEEEEESSHHHHHHHHH-G---------------GGCCBTTBCC
T ss_pred             CCHHHHHHHHHHhCCcce-EEEecCCC----CCcCcEEEEEECCHHHHHHHHh-c---------------CCcEECCcEE
Confidence            346788888999999877 23222110    1123468999999999999997 4               4555678888


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        88 ~V~~a~   93 (101)
T 1fj7_A           88 KLEKPK   93 (101)
T ss_dssp             EEECCS
T ss_pred             EEEEcC
Confidence            877653

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=97.32  E-value=0.0002  Score=49.60  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=47.9

Q ss_pred             eehhHHHHHhhhCCcee--EEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVE--KVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~--kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      .-++|+++-++.| .|+  .|.|...+..     ...+-.||+|++.++|.+|+.               . +|..+.||
T Consensus        54 ~te~dL~~~F~~~-~i~~~~v~i~~d~~G-----rsrGfaFV~F~~~e~A~~Al~---------------~-~~~~l~gR  111 (126)
T 2hgm_A           54 CTKEEIVQFFSGL-EIVPNGITLPVDPEG-----KITGEAFVQFASQELAEKALG---------------K-HKERIGHR  111 (126)
T ss_dssp             CCHHHHHHHTTTS-CEEEEEEECCCCSSS-----SSCSEEEEEESSTTHHHHHHT---------------T-TTCCBTTB
T ss_pred             CCHHHHHHHHhcC-CceeeEEEEEECCCC-----CCceEEEEEECCHHHHHHHHH---------------H-CCCEECCE
Confidence            4467899899999 455  7888765431     124568999999999999999               5 55778888


Q ss_pred             EEEEEEecc
Q psy2134          86 MVRAELYDQ   94 (104)
Q Consensus        86 ~V~a~~yd~   94 (104)
                      .|....-..
T Consensus       112 ~I~V~~a~~  120 (126)
T 2hgm_A          112 YIEVFKSSQ  120 (126)
T ss_dssp             CCCCEEECH
T ss_pred             EEEEEECCH
Confidence            877655443

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=97.30  E-value=0.00093  Score=45.70  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=45.4

Q ss_pred             ehhHHHHHhhhC----C-------ceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh
Q psy2134           9 IYNEKQSDDEAY----G-------QVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL   77 (104)
Q Consensus         9 i~~ev~~Ec~ky----G-------~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L   77 (104)
                      =++|+++-+++|    |       .|.++.+...+          +-.||+|.+.++|.+|+.                |
T Consensus        17 te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~----------g~afV~F~~~~~A~~Al~----------------l   70 (198)
T 2yh0_A           17 TEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK----------NFAFLEFRSVDETTQAMA----------------F   70 (198)
T ss_dssp             CHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT----------TEEEEEESCSHHHHHHGG----------------G
T ss_pred             CHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC----------CEEEEEeCCHHHHHHHHH----------------h
Confidence            467888889999    5       67776665432          358999999999999984                5


Q ss_pred             cCceeCCeEEEEEEec
Q psy2134          78 NGRFFAGRMVRAELYD   93 (104)
Q Consensus        78 nGR~F~GR~V~a~~yd   93 (104)
                      ||..+.|+.|...+-.
T Consensus        71 ~g~~~~g~~i~v~~~~   86 (198)
T 2yh0_A           71 DGIIFQGQSLKIRRPH   86 (198)
T ss_dssp             TTEEETTEEEEEECCC
T ss_pred             cCCEEcCceEEEeCCC
Confidence            6777788999888643

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=97.25  E-value=0.00032  Score=43.61  Aligned_cols=61  Identities=21%  Similarity=0.167  Sum_probs=44.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+.         +-.||+|.+.++|++|..               .  +-.+.|+.|
T Consensus        17 ~te~~l~~~F~~~G~i~~v~i~~~~~---------g~afV~f~~~~~a~~~~~---------------~--~~~~~g~~l   70 (88)
T 1wf0_A           17 MTEDELREFFSQYGDVMDVFIPKPFR---------AFAFVTFADDQIAQSLCG---------------E--DLIIKGISV   70 (88)
T ss_dssp             SCHHHHHHHSTTTSCCCEEECCSSCC---------SCCEEECSCHHHHHHTTT---------------C--EEEETTEEE
T ss_pred             CCHHHHHHHHHHcCCeeEEEEecCCC---------CEEEEEECCHHHHHHHhc---------------C--CceeCCEEE
Confidence            34678898999999999998876422         347999999999964322               1  223488888


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ...+-..
T Consensus        71 ~v~~a~~   77 (88)
T 1wf0_A           71 HISNAEP   77 (88)
T ss_dssp             EEECCCC
T ss_pred             EEEecCC
Confidence            8876544

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=96.95  E-value=0.002  Score=45.06  Aligned_cols=61  Identities=10%  Similarity=0.047  Sum_probs=47.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCC-HHHHHHHHHhhccchhhhhhhhhhhh--cCceeCC
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSK-MQEAEYARDALNGRFFAEAEYARDAL--NGRFFAG   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~-~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~G   84 (104)
                      .-.+++++-+++||.|..|.+.....          .-||+|.+ ..+|..|+.               +|  +|..+.|
T Consensus        31 ~sredLke~F~~~G~V~~Vd~~~g~~----------tgfVrf~~~~~~A~~av~---------------~ln~~~~~i~g   85 (121)
T 1owx_A           31 TCREDLHILFSNHGEIKWIDFVRGAK----------EGIILFKEKAKEALGKAK---------------DANNGNLQLRN   85 (121)
T ss_dssp             CCHHHHHHHTCSSCCEEEEECCTTCS----------EEEEEESSCHHHHHHHHH---------------HTTTSCBCTTS
T ss_pred             CCHHHHHHHHHhcCCEEEEEEecCCC----------EEEEEECCChHHHHHHHH---------------HhhcCCcEEeC
Confidence            45789999999999999877755322          27999999 799999999               66  3667777


Q ss_pred             eEEEEEEec
Q psy2134          85 RMVRAELYD   93 (104)
Q Consensus        85 R~V~a~~yd   93 (104)
                      ..++.+...
T Consensus        86 ~~~~~evL~   94 (121)
T 1owx_A           86 KEVTWEVLE   94 (121)
T ss_dssp             SSEEEEECC
T ss_pred             cEEEEEECC
Confidence            777776543

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=96.92  E-value=0.00027  Score=47.83  Aligned_cols=65  Identities=14%  Similarity=0.086  Sum_probs=44.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -++|+++-.++||.|..+.|.....     ....+..||+|.+.++|.+|+.                |||..+.|+.+.
T Consensus        26 t~~~l~~~f~~~g~~~~~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~----------------l~g~~~~g~~l~   84 (175)
T 1fje_B           26 SVAELKVAISELFAKNDLAVVDVRT-----GTNRKFGYVDFESAEDLEKALE----------------LTGLKVFGNEIK   84 (175)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCEEEE-----ETTTTEEEEEESSHHHHHHHHH----------------GGGEEETTEEEE
T ss_pred             CHHHHHHHHHHhCCcceEEEEECCC-----CccccEEEEEECCHHHHHHHHh----------------cCCCEeCCeEEE
Confidence            3567777778888766522222111     1123468999999999999996                567777889999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      ..+...
T Consensus        85 v~~~~~   90 (175)
T 1fje_B           85 LEKPKG   90 (175)
T ss_dssp             EECCCC
T ss_pred             EecCCC
Confidence            887653

>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.01  Score=42.30  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             CceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEEEEe
Q psy2134          21 GQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRAELY   92 (104)
Q Consensus        21 G~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a~~y   92 (104)
                      |.+.||++..++++          ..|+|.+...|-+|.-               +|||=.|+||.+++.-.
T Consensus        51 g~i~KI~L~pDH~G----------Aivef~d~~~AgKasL---------------aL~G~ef~gr~Lr~gTv   97 (117)
T 2l9w_A           51 KDIRKILLVSDFNG----------AIIIFRDSKFAAKMLM---------------ILNGSQFQGKVIRSGTI   97 (117)
T ss_dssp             TTCSEEEEETTTTE----------EEEECSCHHHHHHHHH---------------HHSSEEETTEEEEEECH
T ss_pred             cceeEEEEecCCCc----------eEEEEccchhhHHHHh---------------hcCCeeecCeEEEecCH
Confidence            99999888777662          6899999999999999               99999999999998643

>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1

Probab=96.04  E-value=0.024  Score=39.96  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=43.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC-eEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG-RMV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G-R~V   87 (104)
                      ..+.|-.+.++||.|++...+..          .--|.|+|++..+|++|+.                .||+.++| -||
T Consensus        36 ~~~~VL~~F~~~G~Iv~~~~~~~----------~NWihI~Y~s~~~A~rAL~----------------kNG~ii~g~~mI   89 (119)
T 1wwh_A           36 SASYILLQFAQYGNILKHVMSNT----------GNWMHIRYQSKLQARKALS----------------KDGRIFGESIMI   89 (119)
T ss_dssp             GHHHHHHHHHTTSCEEEEEECSS----------SSEEEEEESSHHHHHHHHT----------------TTTCEETTTEEC
T ss_pred             HHHHHHHHHHhhCcEEEeccCCC----------CCeEEEEeCCHHHHHHHHH----------------hCCeEecCCEEE
Confidence            35677889999999998665211          1258999999999999998                48888875 566


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      -+.-+
T Consensus        90 GV~p~   94 (119)
T 1wwh_A           90 GVKPC   94 (119)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            55544

>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=95.49  E-value=0.045  Score=37.92  Aligned_cols=59  Identities=17%  Similarity=0.171  Sum_probs=46.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      +..+++=...|+............          +|-|.|+++++|.+|+.               .|+|-.|.|+.+++
T Consensus        24 k~~~e~Lf~~~~~~~tF~~lkSFR----------Rirv~F~~~~~A~~AR~---------------~Lh~~~f~g~~~r~   78 (104)
T 1wey_A           24 RAKFESLFRTYDKDTTFQYFKSFK----------RVRINFSNPLSAADARL---------------RLHKTEFLGKEMKL   78 (104)
T ss_dssp             HHHHHHHHHTTCSSCEEEEETTTT----------EEEEECSSTTHHHHHHH---------------TSTTSEETTEECEE
T ss_pred             HHHHHHHHHhhCcCcceeecCcce----------EEEEEeCChHHHHHHHH---------------HhccceecCceeEE
Confidence            344444456899998865555433          89999999999999999               99999999999997


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .|=.
T Consensus        79 YFgq   82 (104)
T 1wey_A           79 YFAQ   82 (104)
T ss_dssp             ECCC
T ss_pred             EecC
Confidence            7643

>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}

Probab=90.59  E-value=0.29  Score=35.15  Aligned_cols=71  Identities=14%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             ehhHHHHHhhhCCceeEE-EEecCCC---------CCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhc
Q psy2134           9 IYNEKQSDDEAYGQVEKV-VIYNEKQ---------SDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALN   78 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV-~I~~~~~---------~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~Ln   78 (104)
                      +..-|-.+.++||.|.+- .+..+..         ..-+...+--=|.|+|++..+|.+|++                -|
T Consensus        19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~----------------~N   82 (132)
T 3p3d_A           19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL----------------EN   82 (132)
T ss_dssp             GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT----------------TT
T ss_pred             HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH----------------hC
Confidence            445677789999998661 1111000         000000133458899999999999998                68


Q ss_pred             CceeCCeEEEEEEeccc
Q psy2134          79 GRFFAGRMVRAELYDQS   95 (104)
Q Consensus        79 GR~F~GR~V~a~~yd~~   95 (104)
                      |+.|+|-||-+.-|+.+
T Consensus        83 G~ii~G~mIGV~Py~~~   99 (132)
T 3p3d_A           83 GAVFNGVLLGVIPYTKD   99 (132)
T ss_dssp             TCEETTEECEEEECCHH
T ss_pred             CeEeCcEEEEEEECCHH
Confidence            99999999999998764

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=85.04  E-value=0.36  Score=32.29  Aligned_cols=35  Identities=11%  Similarity=-0.136  Sum_probs=29.4

Q ss_pred             eEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCeEEEEEEe
Q psy2134          42 IVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGRMVRAELY   92 (104)
Q Consensus        42 ~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR~V~a~~y   92 (104)
                      .|..+|+|.+.++|++|+.               .| ||..+.| .+...+-
T Consensus        13 ~G~~~ve~~~~~~A~~a~~---------------~~~ng~~~~G-~~~~~~a   48 (150)
T 2i2y_A           13 KGETTTEAVDAATAEKVFK---------------QYANDNGVDG-EWTYDDA   48 (150)
T ss_dssp             CEEEEEECSSHHHHTTTHH---------------HHHHHHTCCC-EEEEETT
T ss_pred             cccceeeecCHHHHHHHHH---------------HHhcCCCCCC-ceecccc
Confidence            4677999999999999999               88 8888888 7777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1o0pa_	104	d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit	3e-07
d2dita1	99	d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Huma	0.003

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 69  EAEYARDALNGRFFAGRMVRAELYDQSLFDHNDF 102
           + + A   L GR FA R+V  +  D   +   DF
Sbjct: 70  DCQKAMQGLTGRKFANRVVVTKYCDPDSYHRRDF 103

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.2 bits (73), Expect = 0.003
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 28 IYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFF------AEAEYARDALNGRF 81
            ++    +E  E +      F ++++        +G          EA+Y    L+GR+
Sbjct: 22 FEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRW 81

Query: 82 FAGRMVRAELYD 93
          F GR + A+ +D
Sbjct: 82 FGGRQITAQAWD 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	99.83
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	99.68
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	99.51
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	98.98
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.95
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.94
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	98.9
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	98.89
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	98.89
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	98.85
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	98.85
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	98.84
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	98.83
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	98.83
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.81
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.79
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	98.78
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	98.77
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.76
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	98.75
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.75
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.74
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	98.74
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	98.74
d1weya_	104	Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090	98.73
d1nu4a_	91	Splicesomal U1A protein {Human (Homo sapiens) [Tax	98.73
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	98.73
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	98.73
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	98.71
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.7
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	98.7
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	98.69
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	98.68
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.66
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.65
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	98.65
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	98.64
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	98.63
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	98.63
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	98.62
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	98.58
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	98.54
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.54
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	98.51
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	98.51
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	98.49
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	98.48
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	98.47
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	98.47
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	98.47
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	98.46
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	98.45
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.45
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	98.45
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	98.44
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.43
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	98.43
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	98.43
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	98.41
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	98.39
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	98.39
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	98.37
d1wwha1	81	Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090	98.33
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	98.32
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	98.32
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	98.32
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	98.32
d1wi6a1	75	Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (M	98.31
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	98.3
d1wg1a_	88	Probable RNA-binding protein KIAA1579 {Human (Homo	98.29
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	98.28
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	98.23
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	98.21
d2cpea1	101	RNA-binding protein EWS {Human (Homo sapiens) [Tax	98.17
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	98.0
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	97.95
d1wg5a_	104	Heterogeneous nuclear ribonucleoprotein H' {Human	97.89
d2disa1	96	Hypothetical protein FLJ20273 {Human (Homo sapiens	97.85
d2cpya1	103	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.84
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	97.8
d1weza_	102	Heterogeneous nuclear ribonucleoprotein H' {Human	97.78
d1fjeb1	91	Nucleolin {Golden hamster (Mesocricetus auratus) [	97.76
d1wela1	112	RNA-binding protein 12 {Human (Homo sapiens) [TaxI	97.56
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	97.55
d2dgxa1	73	Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 960	97.49
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	96.87
d1u2fa_	90	Splicing factor U2AF 65 KDa subunit {Human (Homo s	96.54
d1ufwa_	95	Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]	95.62

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.8e-21  Score=129.62  Aligned_cols=79  Identities=27%  Similarity=0.393  Sum_probs=70.5

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      -+|.+|+++||++||.|++|+|+.+.+.  ..+...|.+||+|.++++|.+|+.               .||||+|+||.
T Consensus        25 ~~i~edi~~e~~k~G~v~~v~I~~~~~~--~~~~~~g~vfV~f~~~e~A~~A~~---------------~l~Gr~f~gR~   87 (104)
T d1o0pa_          25 EEIVEDVRDECSKYGLVKSIEIPRPVDG--VEVPGCGKIFVEFTSVFDCQKAMQ---------------GLTGRKFANRV   87 (104)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEECCCCTTS--SSCTTCCEEEEEESCHHHHHHHHH---------------HHSSCCSSSSC
T ss_pred             HHHHHHHHHHhcccCceEEEEEeecCCC--CccCCceEEEEEECCHHHHHHHHH---------------HHCCCEECCeE
Confidence            4688999999999999999999876543  334566899999999999999999               99999999999


Q ss_pred             EEEEEeccccccccCC
Q psy2134          87 VRAELYDQSLFDHNDF  102 (104)
Q Consensus        87 V~a~~yd~~~f~~~~~  102 (104)
                      |.+.||+++.|..++|
T Consensus        88 v~v~f~~~~~y~~~~f  103 (104)
T d1o0pa_          88 VVTKYCDPDSYHRRDF  103 (104)
T ss_dssp             CEEEEECHHHHHHTSC
T ss_pred             EEEEEcCHHHhhhccC
Confidence            9999999999999887

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.3e-17  Score=107.67  Aligned_cols=64  Identities=28%  Similarity=0.551  Sum_probs=58.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|++|++++|++||+|.+|.|+.+++        .|.+||+|+++++|.+|+.               .||||+|+||.|
T Consensus        31 ~i~edv~~~~~~~G~V~~v~~~~~~~--------~G~~fV~f~~~e~A~~A~~---------------~lng~~~~gr~i   87 (99)
T d2dita1          31 EIREDLRVECSKFGQIRKLLLFDRHP--------DGVASVSFRDPEEADYCIQ---------------TLDGRWFGGRQI   87 (99)
T ss_dssp             HHHHHHHHHGGGTSCCSEEEEETTCT--------TCEEEEECSCHHHHHHHHH---------------HSTTCEETTEEC
T ss_pred             HHHHHHHHHhcCcccEEEEeccCCCC--------ccEEEEEECCHHHHHHHHH---------------HhCCcEECCEEE
Confidence            68899999999999999999877643        2579999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .++||++
T Consensus        88 ~v~~~~g   94 (99)
T d2dita1          88 TAQAWDG   94 (99)
T ss_dssp             EEEECCS
T ss_pred             EEEEeCC
Confidence            9999964

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.1e-14  Score=94.74  Aligned_cols=65  Identities=29%  Similarity=0.535  Sum_probs=54.0

Q ss_pred             ehhHHHHHh-hhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           9 IYNEKQSDD-EAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         9 i~~ev~~Ec-~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +.+|+..|| +|||+|++|.|+.+..     ....|.+||+|.+.++|.+|+.               .||||+|+||.|
T Consensus        39 ~~ed~l~e~f~k~G~I~~v~I~~~~~-----~~~~G~~fV~f~~~~~A~~Ai~---------------~lng~~~~gr~i   98 (104)
T d1jmta_          39 FFEEVFTEMEEKYGEVEEMNVCDNLG-----DHLVGNVYVKFRREEDAEKAVI---------------DLNNRWFNGQPI   98 (104)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEECCSSS-----SSSEEEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             hhHHHHHHHhccCCCEEEEEeecCCC-----CCEeeEEEEEEechhHHHHHHH---------------HHCCCEECCEEE
Confidence            344545555 8999999999986543     1346889999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .++|+|
T Consensus        99 ~v~~sP  104 (104)
T d1jmta_          99 HAELSP  104 (104)
T ss_dssp             CEEECC
T ss_pred             EEEECC
Confidence            999986

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.1e-09  Score=69.77  Aligned_cols=65  Identities=22%  Similarity=0.291  Sum_probs=51.7

Q ss_pred             hhHH---HHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134          10 YNEK---QSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus        10 ~~ev---~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .+|+   .+-.++||+|.+|.|...+..... ....+-.||+|++.++|.+|+.               .|||..|.||.
T Consensus        22 ~~~l~~~~e~F~~~G~I~~v~i~~~~~~~~~-~~~~g~aFV~f~~~~~A~~Ai~---------------~lng~~~~gr~   85 (89)
T d2cpia1          22 DPEVLKRPEYFGKFGKIHKVVINNSTSYAGS-QGPSASAYVTYIRSEDALRAIQ---------------CVNNVVVDGRT   85 (89)
T ss_dssp             CHHHHHSTTTTTTTSCEEEEEEECCSSCCSS-SCCCEEEEEEESSHHHHHHHHH---------------HHTTEEETTEE
T ss_pred             HHHHHHHHHHhcccCCceEEEEeeccCcCCC-CCcceEEEEecccchhHHHHHH---------------HhCCCEECCEE
Confidence            3566   445789999999999876543221 1223568999999999999999               99999999999


Q ss_pred             EEEE
Q psy2134          87 VRAE   90 (104)
Q Consensus        87 V~a~   90 (104)
                      |+++
T Consensus        86 lkvS   89 (89)
T d2cpia1          86 LKAS   89 (89)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9985

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.7e-09  Score=65.14  Aligned_cols=67  Identities=19%  Similarity=0.236  Sum_probs=55.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..+....    .-.+-.||+|.+.++|+.|++               .|||..+.||.|.
T Consensus        15 te~~l~~~f~~~G~v~~v~i~~~~~~~----~~~g~afv~f~~~~~a~~a~~---------------~l~g~~~~g~~l~   75 (82)
T d1fxla1          15 TQEEFRSLFGSIGEIESCKLVRDKITG----QSLGYGFVNYIDPKDAEKAIN---------------TLNGLRLQTKTIK   75 (82)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHHhCCcccccceeeccCC----CceeeEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            357899999999999999998654421    234568999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-.+
T Consensus        76 v~~AkP   81 (82)
T d1fxla1          76 VSYARP   81 (82)
T ss_dssp             EEECCC
T ss_pred             EEEeeC
Confidence            987543

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.1e-09  Score=65.98  Aligned_cols=65  Identities=17%  Similarity=0.165  Sum_probs=55.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|+.++.+.    .-.+-.||+|.++++|..|++               .|||..+.||.|+
T Consensus        13 te~~l~~~F~~~G~i~~v~i~~d~~tg----~~~g~aFV~f~~~~~a~~ai~---------------~l~g~~~~gr~i~   73 (80)
T d1cvja1          13 TEAMLYEKFSPAGPILSIRVCRDMITR----RSLGYAYVNFQQPADAERALD---------------TMNFDVIKGKPVR   73 (80)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHT---------------TSTTCEETTEECE
T ss_pred             CHHHHHHHHHHhCCEeEEEEEeccccc----CCCCceEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            367888889999999999998765532    234678999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+-
T Consensus        74 v~~a   77 (80)
T d1cvja1          74 IMWS   77 (80)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            8764

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.9e-09  Score=68.71  Aligned_cols=65  Identities=18%  Similarity=0.267  Sum_probs=55.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+++++-+++||+|.+|.|.....+       .|-.||+|.+.++|..|+.               .|||..|.||.|
T Consensus        19 ~te~~l~~~F~~~G~v~~i~~~~~~~~-------kG~afV~f~~~~~A~~Ai~---------------~l~g~~~~gr~l   76 (114)
T d2f9da1          19 ITAEEMYDIFGKYGPIRQIRVGNTPET-------RGTAYVVYEDIFDAKNACD---------------HLSGFNVCNRYL   76 (114)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEEECSTTT-------TTEEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHhhcCCeEeecccccCCc-------CCeEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            346889999999999999999765432       2457999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      .+.+...
T Consensus        77 ~V~~a~~   83 (114)
T d2f9da1          77 VVLYYNA   83 (114)
T ss_dssp             EEEECCH
T ss_pred             EEEEcCC
Confidence            9998754

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=4.6e-09  Score=65.04  Aligned_cols=66  Identities=20%  Similarity=0.226  Sum_probs=55.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||+|.+|.|..++..     ...+-.||+|.+.++|..|++               .|||..+.||.|
T Consensus        12 ~~~~~l~~~F~~~G~v~~~~i~~~~~g-----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~l~g~~l   71 (78)
T d1no8a_          12 VSDADIQELFAEFGTLKKAAVHYDRSG-----RSLGTADVHFERKADALKAMK---------------QYNGVPLDGRPM   71 (78)
T ss_dssp             CCHHHHHHHHHHHSCEEEEEESCSSCC-----CSCCEEEEEESCHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             CCHHHHHHHHHHhCCCeEEEEEEeecc-----ccceeEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            446789999999999999999875432     123568999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      +.++-+
T Consensus        72 ~V~~a~   77 (78)
T d1no8a_          72 NIQLVT   77 (78)
T ss_dssp             EEEEEC
T ss_pred             EEEEee
Confidence            998754

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.89  E-value=3e-09  Score=65.71  Aligned_cols=65  Identities=17%  Similarity=0.162  Sum_probs=54.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..++.+.    ...+-.||+|.+.++|++|++               .|||..+.|+.|+
T Consensus        15 t~~~l~~~F~~~G~v~~~~i~~~~~~g----~~~g~afV~f~~~~~A~~ai~---------------~lng~~~~g~~l~   75 (82)
T d1b7fa1          15 TDRELYALFRAIGPINTCRIMRDYKTG----YSYGYAFVDFTSEMDSQRAIK---------------VLNGITVRNKRLK   75 (82)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCEETTTT----EECSEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHHhCCcceeeeeeecccC----CccccceEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            357899999999999999988755421    123458999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        76 v~~a   79 (82)
T d1b7fa1          76 VSYA   79 (82)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9864

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.85  E-value=1.1e-08  Score=64.61  Aligned_cols=65  Identities=18%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..++.+.    ...+-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus        20 t~~~l~~~F~~~G~i~~v~i~~d~~tg----~~~g~afV~f~~~~~A~~A~~---------------~lng~~l~g~~l~   80 (88)
T d1rk8a_          20 QEDEIQEKFCDYGEIKNIHLNLDRRTG----FSKGYALVEYETHKQALAAKE---------------ALNGAEIMGQTIQ   80 (88)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTS----SEEEEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHHcCCccccccccccccc----ccccceeEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            367899999999999999987754421    123558999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ++|-
T Consensus        81 V~~a   84 (88)
T d1rk8a_          81 VDWC   84 (88)
T ss_dssp             EEES
T ss_pred             EEEe
Confidence            8863

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=5.8e-09  Score=67.63  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=52.2

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++-+++||+|.+|.|..            +-.||+|.+.++|.+|++               .|||+.|.|+.|++
T Consensus        30 ~~~L~~~F~~~G~i~~~~i~r------------g~aFV~f~~~~~A~~Ai~---------------~lng~~~~g~~l~V   82 (98)
T d1wf2a_          30 KSDVEAIFSKYGKIVGCSVHK------------GFAFVQYVNERNARAAVA---------------GEDGRMIAGQVLDI   82 (98)
T ss_dssp             HHHHHHSSTTSSCEEEEEEET------------EEEEEEESSHHHHHHHHH---------------TTTTCEETTEECEE
T ss_pred             HHHHHHHHhhcCCEEEEEEeC------------CeEEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            567888899999999999853            358999999999999999               99999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .+-...
T Consensus        83 ~~a~~~   88 (98)
T d1wf2a_          83 NLAAEP   88 (98)
T ss_dssp             EETTSC
T ss_pred             EECCCC
Confidence            986543

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.2e-08  Score=63.29  Aligned_cols=62  Identities=26%  Similarity=0.348  Sum_probs=51.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|..++.+.    ...+-.||+|.+.++|..|++               .|||..|.||.|+
T Consensus        22 te~~l~~~F~~~G~i~~v~i~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~gr~i~   82 (83)
T d2cqca1          22 TERDLREVFSKYGPIADVSIVYDQQSR----RSRGFAFVYFENVDDAKEAKE---------------RANGMELDGRRIR   82 (83)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEECSSSS----SEEEEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred             CHHHHHHHHHHhCCCcccccccccccc----ccccceEEEECCHHHHHHHHH---------------HcCCCEECCEEeE
Confidence            367899999999999999998755421    234568999999999999999               9999999999986


Q ss_pred             E
Q psy2134          89 A   89 (104)
Q Consensus        89 a   89 (104)
                      .
T Consensus        83 V   83 (83)
T d2cqca1          83 V   83 (83)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.8e-09  Score=68.61  Aligned_cols=60  Identities=25%  Similarity=0.290  Sum_probs=52.9

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++.+-+++||.|.+|.|...+.         +..||+|++.++|.+|++               .|||..+.||.|+
T Consensus        16 te~~L~~~F~~fG~I~~v~i~~~~k---------g~afV~f~~~~~A~~ai~---------------~lng~~l~g~~l~   71 (109)
T d2adca1          16 TPQSLFILFGVYGDVQRVKILFNKK---------ENALVQMADGNQAQLAMS---------------HLNGHKLHGKPIR   71 (109)
T ss_dssp             CHHHHHHHHHHHTCEEEEEECCTTS---------CCEEEEESCHHHHHHHHH---------------HHTTCBCSSSBCE
T ss_pred             CHHHHHHHHhhccccceEEEEeccc---------ceEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            3678999999999999999976543         358999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+-
T Consensus        72 v~~s   75 (109)
T d2adca1          72 ITLS   75 (109)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            9974

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=9.2e-09  Score=65.03  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=54.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||.|.+|.|..+..+.    ...+-.||+|.+.++|.+|+.               .|||..+.|+.|.
T Consensus        21 t~~~l~~~f~~~G~v~~v~i~~d~~t~----~~rg~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~i~   81 (90)
T d2cq0a1          21 RETDLQELFRPFGSISRIYLAKDKTTG----QSKGFAFISFHRREDAARAIA---------------GVSGFGYDHLILN   81 (90)
T ss_dssp             CHHHHHTTSTTTCCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------HTTTCEETTEECE
T ss_pred             CHHHHHHHHHHhccccccccccccccc----ccccceeEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            357888889999999999988754421    234568999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        82 v~~a   85 (90)
T d2cq0a1          82 VEWA   85 (90)
T ss_dssp             EEES
T ss_pred             EEee
Confidence            9864

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.1e-08  Score=63.68  Aligned_cols=69  Identities=16%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|...+..... ..-.|-.||+|.+.++|.+|+.               .|||..+.||.|.
T Consensus        11 t~~~l~~~F~~~G~v~~v~i~~~~~~~~~-~~~kG~afV~f~~~~~A~~A~~---------------~~~~~~~~g~~i~   74 (85)
T d2cpfa1          11 TEETLKGVFSKVGAIKSCTISKKKNKAGV-LLSMGFGFVEYKKPEQAQKALK---------------QLQGHTVDGHKLE   74 (85)
T ss_dssp             CHHHHHHHHHTTSCEEEEEEEEEECTTCC-EEEEEEEEEEESSHHHHHHHHH---------------HSTTCEETTEECE
T ss_pred             CHHHHHHHHHHhCCccccceecccccccc-cccceEEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            46789999999999999999876543211 1123558999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.+-+
T Consensus        75 V~~a~   79 (85)
T d2cpfa1          75 VRISE   79 (85)
T ss_dssp             EECSS
T ss_pred             EEECC
Confidence            98753

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.7e-08  Score=63.70  Aligned_cols=63  Identities=22%  Similarity=0.165  Sum_probs=54.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|..+..+      +.+..||+|.+.++|..|+.               .|||..+.|+.|+
T Consensus        21 te~~l~~~F~~~G~i~~v~i~~d~~~------~~~~afV~f~~~~~A~~A~~---------------~l~~~~~~g~~i~   79 (90)
T d2cqia1          21 TEVLILQLFSQIGPCKSCKMITEHTS------NDPYCFVEFYEHRDAAAALA---------------AMNGRKILGKEVK   79 (90)
T ss_dssp             CHHHHHHHHHHHSCEEEEEEECCCCS------SCCEEEEEESSHHHHHHHHH---------------HHTTEEETTEEEE
T ss_pred             CHHHHHHHHHhcCCceeeeeecccCc------cceeeEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            36788989999999999999876543      23568999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        80 v~~a   83 (90)
T d2cqia1          80 VNWA   83 (90)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9875

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=2.6e-08  Score=63.50  Aligned_cols=65  Identities=18%  Similarity=0.219  Sum_probs=55.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||+|.+|.|..++...    .-.+-.||+|.+.++|..|++               .|||..+.||.|.
T Consensus        20 te~~l~~~F~~~G~i~~v~i~~~~~~~----~~kg~afV~f~~~~~A~~Ai~---------------~l~g~~~~gr~i~   80 (93)
T d1h2vz_          20 TEEQIYELFSKSGDIKKIIMGLDKMKK----TACGFCFVEYYSRADAENAMR---------------YINGTRLDDRIIR   80 (93)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HTTTSEETTEECE
T ss_pred             CHHHHHHHHHHHCCcceeccccccccc----cccceEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            367899999999999999998765432    123568999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..|=
T Consensus        81 V~~a   84 (93)
T d1h2vz_          81 TDWD   84 (93)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9863

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=8e-09  Score=64.09  Aligned_cols=58  Identities=17%  Similarity=0.275  Sum_probs=51.3

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++++++-+++||.|.+|.|..++.          ..||+|.+.++|..|+.               .|||..+.|+.|+.
T Consensus        17 e~~L~~~F~~~G~I~~v~~~~~~~----------~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~l~V   71 (79)
T d2bz2a1          17 PTLLRGAFSPFGNIIDLSMDPPRN----------CAFVTYEKMESADQAVA---------------ELNGTQVESVQLKV   71 (79)
T ss_dssp             HHHHHHHHSTTCCCSCEEEETTTT----------EEEEECSSHHHHHHHHH---------------HHTTCBCSSCBCEE
T ss_pred             HHHHHHHHhccCccceeeeccCCC----------EEEEEEcccHHHHHHHH---------------HhCCCEECCEEEEE
Confidence            678899999999999999876432          47999999999999999               99999999999998


Q ss_pred             EEe
Q psy2134          90 ELY   92 (104)
Q Consensus        90 ~~y   92 (104)
                      .+=
T Consensus        72 ~~a   74 (79)
T d2bz2a1          72 NIA   74 (79)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            764

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=1.2e-08  Score=62.94  Aligned_cols=66  Identities=11%  Similarity=0.118  Sum_probs=51.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||.|..+++....+..    .-.+-.||+|.+.++|.+|++               .|||..+.||.|.+
T Consensus        15 ~~~l~~~f~~~G~v~~~~~~~~~~~~----~~~g~afV~f~~~e~A~~Ai~---------------~l~g~~~~g~~i~V   75 (81)
T d2ghpa1          15 QRNIRDLLQDINVVALSIRLPSLRFN----TSRRFAYIDVTSKEDARYCVE---------------KLNGLKIEGYTLVT   75 (81)
T ss_dssp             HHHHHHHHHHTTCCCCEEECC-----------CCEEEEECSSHHHHHHHHH---------------HHTTCEETTEECEE
T ss_pred             HHHHHHHHHHhCcEEeeeeecccccc----cccceeEEEECCHHHHHHHHH---------------HhCCCEECCEEEEE
Confidence            57889999999999887776543321    123458999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+-++
T Consensus        76 ~~a~P   80 (81)
T d2ghpa1          76 KVSNP   80 (81)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            87643

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.7e-08  Score=64.95  Aligned_cols=59  Identities=24%  Similarity=0.300  Sum_probs=52.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||.|.+|.|..++          +-.||+|.+.++|..|+.               .|||..+.|+.|+
T Consensus        31 te~~L~~~F~~fG~i~~v~i~~~k----------g~afV~f~~~~~A~~Ai~---------------~l~~~~i~g~~l~   85 (96)
T d1x4ga1          31 TDQLMRQTFSPFGQIMEIRVFPEK----------GYSFVRFSTHESAAHAIV---------------SVNGTTIEGHVVK   85 (96)
T ss_dssp             CHHHHHHHHHHHSCEEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHHhCCceEEEEEecc----------eEEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            367888899999999999998653          257999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +++-
T Consensus        86 v~~a   89 (96)
T d1x4ga1          86 CYWG   89 (96)
T ss_dssp             EECC
T ss_pred             EEEc
Confidence            9863

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=2.2e-08  Score=64.04  Aligned_cols=66  Identities=20%  Similarity=0.203  Sum_probs=54.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++-+++||+|.+|.|+..+...  .+  .+-.||+|.+.++|..|+.               .|||..|.||.|++
T Consensus        22 ~~~l~~~F~~~g~v~~v~i~~d~~tg--~~--~g~afV~f~~~~~a~~A~~---------------~l~g~~~~gr~i~V   82 (99)
T d1whwa_          22 EEDLEKLFSAYGPLSELHYPIDSLTK--KP--KGFAFVTFMFPEHAVKAYA---------------EVDGQVFQGRMLHV   82 (99)
T ss_dssp             HHHHHHHHHTTSCEEEEECCCCTTTC--CC--CSEEEEEESSHHHHHHHHH---------------HTTTEESSSCEEEE
T ss_pred             HHHHHHHHHhcCCceeeeeccccccc--cc--CcceEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            67899999999999999987654321  12  3457999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+-..
T Consensus        83 ~~a~~   87 (99)
T d1whwa_          83 LPSTI   87 (99)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            87654

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=1.7e-08  Score=64.50  Aligned_cols=69  Identities=22%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh-cCceeCCeEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL-NGRFFAGRMV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L-nGR~F~GR~V   87 (104)
                      =++|+++-+++||+|.+|.|+......+   .-.+-.||+|.+.++|.+|++               .| ||..+.||.|
T Consensus        21 ~e~~l~~~F~~~G~i~~v~i~~~~~~~g---~~rg~afV~f~~~~~A~~Ai~---------------~l~~~~~~~Gr~l   82 (94)
T d2cpha1          21 NQREIRELFSTFGELKTVRLPKKMTGTG---AHRGFGFVDFITKQDAKKAFN---------------ALCHSTHLYGRRL   82 (94)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCCCCSSSC---SSCSEEEEEESSHHHHHHHHH---------------HHHTCCBSSSCBC
T ss_pred             CHHHHHHHHHHhCCceEEEEEeccccCC---CcccEEEEEECCHHHHHHHHH---------------HccCCcEECCEEE
Confidence            3578899999999999999876543211   123568999999999999999               88 8999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+.+-+.+
T Consensus        83 ~V~~A~~~   90 (94)
T d2cpha1          83 VLEWADSE   90 (94)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99987654

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.6e-08  Score=62.67  Aligned_cols=63  Identities=21%  Similarity=0.268  Sum_probs=54.3

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||+|.+|.|......      ..+..||+|.+.++|.+|+.               .|||..+.||.|.+
T Consensus        25 ~~~L~~~F~~~G~v~~v~~~~~~~~------~kg~afV~f~~~~~a~~Ai~---------------~l~~~~~~g~~l~V   83 (93)
T d2cq3a1          25 DPDLRQMFGQFGKILDVEIIFNERG------SKGFGFVTFENSADADRARE---------------KLHGTVVEGRKIEV   83 (93)
T ss_dssp             HHHHHHHGGGTSCEEEEEEECCTTT------TCCEEEEEESCHHHHHHHHH---------------HHTTCEETTEECEE
T ss_pred             HHHHHHHHhhcceeeeccccccccC------CcceeEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            5789999999999999998876542      13568999999999999999               99999999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-.
T Consensus        84 ~~A~   87 (93)
T d2cq3a1          84 NNAT   87 (93)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            8753

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.2e-09  Score=64.33  Aligned_cols=62  Identities=18%  Similarity=0.169  Sum_probs=49.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.++.+...+...    ...+-.||+|.+.++|.+|+.               .|||+.|.||++
T Consensus        10 ~te~~l~~~F~~~G~v~~~~~~~~~~~~----~~~g~afV~f~~~~~A~~Ai~---------------~lng~~~~Gr~~   70 (72)
T d1x4ea1          10 TTDQDLVKLCQPYGKIVSTKAILDKTTN----KCKGYGFVDFDSPSAAQKAVT---------------ALKASGVQAQMA   70 (72)
T ss_dssp             CCHHHHHTTSTTTSCEEEEEEECCSSSC----SCCSEEEEEESCHHHHHHHHH---------------HHHHHTCCEESC
T ss_pred             CCHHHHHHHHhhhccccccccccccccc----cccceeEEEECCHHHHHHHHH---------------HhCCCEECCEEC
Confidence            4467888899999999999888765432    233457999999999999999               888888888876


Q ss_pred             E
Q psy2134          88 R   88 (104)
Q Consensus        88 ~   88 (104)
                      +
T Consensus        71 k   71 (72)
T d1x4ea1          71 K   71 (72)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Calcipressin-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=1.9e-08  Score=66.11  Aligned_cols=64  Identities=16%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      ++++++++-|+.||.|+++.+....          +..||.|.+.++|.+|+.               .|||..|.|+.|
T Consensus        22 ~~k~~l~~lF~~~G~i~~~~~~k~~----------~~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~l   76 (104)
T d1weya_          22 ETRAKFESLFRTYDKDTTFQYFKSF----------KRVRINFSNPLSAADARL---------------RLHKTEFLGKEM   76 (104)
T ss_dssp             THHHHHHHHHHTTCSSCEEEEETTT----------TEEEEECSSTTHHHHHHH---------------TSTTSEETTEEC
T ss_pred             HHHHHHHHHhcccccceEEEEecCC----------CEEEEEECCHHHHHHHHH---------------HhcccccCCCEe
Confidence            3456677789999999999887533          269999999999999999               999999999999


Q ss_pred             EEEEecccc
Q psy2134          88 RAELYDQSL   96 (104)
Q Consensus        88 ~a~~yd~~~   96 (104)
                      .+.|-....
T Consensus        77 ~v~~a~~~~   85 (104)
T d1weya_          77 KLYFAQTLH   85 (104)
T ss_dssp             EEECCCCSS
T ss_pred             EEeecccCC
Confidence            999875443

>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=6e-09  Score=66.05  Aligned_cols=64  Identities=16%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      +|.+.+.+-+++||+|.+|.|.....+       .+..||+|.+.++|.+|+.               .|||..+.|+.|
T Consensus        19 dl~~~l~~~f~~~G~i~~i~~~~~~~~-------~g~afV~F~~~~~A~~A~~---------------~~~~~~~~g~~l   76 (91)
T d1nu4a_          19 ELKKSLHAIFSRFGQILDILVSRSLKM-------RGQAFVIFKEVSSATNALR---------------SMQGFPFYDKPM   76 (91)
T ss_dssp             HHHHHHHHHHGGGSCEEEEECCHHHHH-------TTCEEEEESSHHHHHHHHH---------------HHTTCEETTEEC
T ss_pred             HHHHHHHHHhcccccccceEEeeeccC-------CCceEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            455666667899999999888653221       2347999999999999999               999999999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        77 ~v~~ak   82 (91)
T d1nu4a_          77 RIQYAK   82 (91)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            998754

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-08  Score=64.02  Aligned_cols=65  Identities=20%  Similarity=0.248  Sum_probs=54.4

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||+|.+|.|..++.+.  .+  .+-.||+|.+.++|.+|+.               .|||..+.|+.|.+
T Consensus        19 e~~l~~~F~~~G~i~~v~i~~d~~~~--~~--kg~afV~f~~~~~A~~ai~---------------~l~~~~i~g~~l~v   79 (89)
T d2cqba1          19 DKVLHAAFIPFGDITDIQIPLDYETE--KH--RGFAFVEFELAEDAAAAID---------------NMNESELFGRTIRV   79 (89)
T ss_dssp             HHHHHHHHTTTSCCCCEECCCCSSSC--CC--SSEEEECCSSHHHHHHHHH---------------HHTTEEETTEEEEE
T ss_pred             HHHHHHHHhhCCeEEecccccccccc--cc--cceeEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            67889899999999999997655421  12  3458999999999999999               99999999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-.
T Consensus        80 ~~a~   83 (89)
T d2cqba1          80 NLAK   83 (89)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            8754

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.2e-08  Score=64.34  Aligned_cols=65  Identities=20%  Similarity=0.174  Sum_probs=54.9

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++=|++||.|.+|.|...+          +-.||+|.+.++|.+|++               .|||..|.||.|.
T Consensus        23 t~~~L~~~F~~fG~I~~v~l~~~k----------g~afV~f~~~~~A~~A~~---------------~lng~~~~gr~l~   77 (111)
T d1whxa_          23 LAAEIQETFSRFGSLGRVLLPEGG----------ITAIVEFLEPLEARKAFR---------------HLAYSKFHHVPLY   77 (111)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCSSS----------SCEEEEESCHHHHHHHHH---------------HHTTCBSSSSBCE
T ss_pred             CHHHHHhhhhccCCccEEEeeccC----------ceEEEEEcCHHHHHHHHH---------------HHcCCccCCCeEE
Confidence            357889899999999998885432          358999999999999999               9999999999999


Q ss_pred             EEEecccccc
Q psy2134          89 AELYDQSLFD   98 (104)
Q Consensus        89 a~~yd~~~f~   98 (104)
                      +++-+...+.
T Consensus        78 v~~a~~~~~~   87 (111)
T d1whxa_          78 LEWAPIGVFG   87 (111)
T ss_dssp             EEEEETTTTC
T ss_pred             EEECCCCccc
Confidence            9887665544

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.8e-08  Score=63.39  Aligned_cols=66  Identities=9%  Similarity=0.125  Sum_probs=55.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|..++.+.    ...+-.||+|.++++|..|+.               .|||..+.|+.|.
T Consensus        14 te~~l~~~F~~~G~v~~v~i~~d~~tg----~~rg~aFV~f~~~~~A~~a~~---------------~l~~~~l~g~~l~   74 (85)
T d2u2fa_          14 NDDQVKELLTSFGPLKAFNLVKDSATG----LSKGYAFCEYVDINVTDQAIA---------------GLNGMQLGDKKLL   74 (85)
T ss_dssp             CSHHHHHHHTSSSCEEEEEEECCCSSS----CCCCEEEEEESSSHHHHHHHH---------------TSSSCCCSSSCCE
T ss_pred             CHHHHHHHHHhcCccceEEeecccccc----ccceeEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            357899999999999999998765421    224568999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      ..+-+
T Consensus        75 V~~A~   79 (85)
T d2u2fa_          75 VQRAS   79 (85)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88754

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.6e-08  Score=64.77  Aligned_cols=62  Identities=15%  Similarity=0.258  Sum_probs=51.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee--CCeEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF--AGRMV   87 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F--~GR~V   87 (104)
                      ++++++-+++||.|.+|.|...+.        .+..||+|.+.++|+.|++               .|||+.+  .|+.|
T Consensus        21 e~~L~~~F~~~G~i~~~~i~~~~~--------~g~aFV~f~~~e~A~~Ai~---------------~ln~~~l~~~~~~l   77 (108)
T d2adba1          21 LDVLHQIFSKFGTVLKIITFTKNN--------QFQALLQYADPVSAQHAKL---------------SLDGQNIYNACCTL   77 (108)
T ss_dssp             HHHHHHHHTTTSCEEEEEEEEETT--------EEEEEEEESCHHHHHHHHH---------------HHHSCCSSTTCCCC
T ss_pred             HHHHHHHHccCCcEEEEEEEeeCC--------CCeEEEEECCHHHHHHHHH---------------HHCCCEeccCCcEE
Confidence            468899999999999999986543        3678999999999999999               8888877  57888


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      +..+...
T Consensus        78 ~v~~s~~   84 (108)
T d2adba1          78 RIDFSKL   84 (108)
T ss_dssp             EEEECSS
T ss_pred             EEEecCC
Confidence            8877543

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.3e-08  Score=61.97  Aligned_cols=64  Identities=23%  Similarity=0.234  Sum_probs=51.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE--
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM--   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~--   86 (104)
                      =++|+++-+++||+|.+|.|...+.+.    ...+-.||+|.+.++|.+|++               .|||..+.|+.  
T Consensus        19 te~~L~~~F~~~G~v~~v~i~~d~~~g----~~kg~afV~f~~~~~a~~Ai~---------------~lng~~~~G~~~~   79 (85)
T d1fxla2          19 TQKELEQLFSQYGRIITSRILVDQVTG----VSRGVGFIRFDKRIEAEEAIK---------------GLNGQKPSGATEP   79 (85)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSSC
T ss_pred             CHHHHHHHHHHhCCccccccccccccc----cCCCeeEEEEcCHHHHHHHHH---------------HhCCCEeCCCCEE
Confidence            368899999999999999998754321    234568999999999999999               88888888754  


Q ss_pred             EEEEE
Q psy2134          87 VRAEL   91 (104)
Q Consensus        87 V~a~~   91 (104)
                      |.+.|
T Consensus        80 i~V~~   84 (85)
T d1fxla2          80 ITVKF   84 (85)
T ss_dssp             CEEEE
T ss_pred             EEEEe
Confidence            66543

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3e-08  Score=62.45  Aligned_cols=65  Identities=18%  Similarity=0.207  Sum_probs=55.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.++.|......      ..+-.||+|.+.++|.+|++               .|||..+.|+.|.
T Consensus        21 t~~~l~~~F~~~G~v~~~~i~~~~~~------~kg~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~i~   79 (89)
T d1cvja2          21 DNKALYDTFSAFGNILSCKVVCDENG------SKGYGFVHFETQEAAERAIE---------------KMNGMLLNDRKVF   79 (89)
T ss_dssp             CHHHHHHHHHTTSCEEEEEECCBTTB------CCSCEEEEESCHHHHHHHTT---------------SSSEEEETTEEEE
T ss_pred             CHHHHHHHHHhcCCceEEEEEeecCC------CcceeEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            36788999999999999999775432      12458999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+...
T Consensus        80 V~~a~~   85 (89)
T d1cvja2          80 VGRFKS   85 (89)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            988743

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2e-08  Score=63.42  Aligned_cols=62  Identities=23%  Similarity=0.268  Sum_probs=53.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-|+.||+|.+|.+...+.          -.||+|.+.++|..|+.               .|||..+.|+.|
T Consensus        20 ~~~~~l~~~F~~~G~i~~i~~~~~k~----------~afV~f~~~~~A~~A~~---------------~l~g~~i~g~~l   74 (86)
T d2cpja1          20 ITEEEMRKLFEKYGKAGEVFIHKDKG----------FGFIRLETRTLAEIAKV---------------ELDNMPLRGKQL   74 (86)
T ss_dssp             CCHHHHHHHTSTTCCCSEEEEETTTT----------EEEEECSSSHHHHHHHH---------------HHTTCCBTTBCC
T ss_pred             CCHHHHHHHHHHhCCceEeeeecccc----------eEEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            34688999999999999999886432          57999999999999999               999999999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ++.+=+.
T Consensus        75 ~V~~A~~   81 (86)
T d2cpja1          75 RVRFACH   81 (86)
T ss_dssp             EEEESSC
T ss_pred             EEEECCC
Confidence            9987543

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.9e-08  Score=63.28  Aligned_cols=67  Identities=15%  Similarity=0.061  Sum_probs=54.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-+++||.|.+|.|..+..+.    ...+-.||+|.+.++|..|+.               .|||..+.||.|+
T Consensus        22 t~~~l~~~F~~~G~v~~v~~~~d~~tg----~~kg~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l~   82 (93)
T d1x5ua1          22 SEPLLWELFLQAGPVVNTHMPKDRVTG----QHQGYGFVEFLSEEDADYAIK---------------IMDMIKLYGKPIR   82 (93)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCBCSSSC----SBCSCEEEEESSHHHHHHHHH---------------HSSSCBCSSCBCE
T ss_pred             CHHHHHHHHHHhCCccccceeeccccc----ccccceEEEECCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            367899999999999999887654421    123458999999999999999               9999999999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        83 V~~A~~   88 (93)
T d1x5ua1          83 VNKASA   88 (93)
T ss_dssp             EEETTT
T ss_pred             EEEcCC
Confidence            886543

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=7.9e-08  Score=60.26  Aligned_cols=65  Identities=25%  Similarity=0.294  Sum_probs=50.1

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++++++-+++||.|++|.|+......   ....+-.||+|++.++|..|+.                |||..|.||.|+.
T Consensus        19 ed~l~~~F~~~G~i~~v~i~~~~~~~---~~~kg~afV~f~~~~~a~~Al~----------------~n~~~~~gr~l~V   79 (86)
T d2ghpa3          19 ENLLRESFEGFGSIEKINIPAGQKEH---SFNNCCAFMVFENKDSAERALQ----------------MNRSLLGNREISV   79 (86)
T ss_dssp             HHHHHHHHGGGSCEEEEECCSCCC------CCCEEEEEEESSHHHHHHHGG----------------GTTEEETTEEEEE
T ss_pred             HHHHHHHHHhhhhccceeeecccCCc---cccceeeeEEECCHHHHHHHHh----------------cCCCEECCEEEEE
Confidence            34588889999999999887643221   1234568999999999999865                7899999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-.
T Consensus        80 ~~a~   83 (86)
T d2ghpa3          80 SLAD   83 (86)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            8754

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.8e-08  Score=62.74  Aligned_cols=65  Identities=18%  Similarity=0.174  Sum_probs=54.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.++.+...+...    ...+-.||+|.+.++|..|++               .|||..|.||.|.
T Consensus        31 te~~l~~~F~~~G~i~~~~~~~~~~~g----~~kG~afV~f~~~~~A~~Ai~---------------~lng~~~~g~~i~   91 (102)
T d2cpza1          31 GDQDLLQMFMPFGNVVSAKVFIDKQTN----LSKCFGFVSYDNPVSAQAAIQ---------------SMNGFQIGMKRLK   91 (102)
T ss_dssp             CHHHHHHHHGGGSCCSEEEEEECSSSC----SEEEEEEEECSSHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHHhhccccccceeeecccC----CCccceEEEeCCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            367899999999999999887654421    234569999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        92 V~~a   95 (102)
T d2cpza1          92 VQLK   95 (102)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8864

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=6.9e-08  Score=60.67  Aligned_cols=71  Identities=14%  Similarity=0.097  Sum_probs=56.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++++++-+++||+|..+.+.......    ...+-.||+|.+.++|.+|+++||+..+         .+|..+.||.|.
T Consensus        21 te~~l~~~f~~~G~v~~~~~~~~~~~~----~~~g~afV~F~~~~~a~~ai~~l~~~~~---------~~g~~~~gr~l~   87 (98)
T d1x4ha1          21 EEEALGEVLQQFGDLKYVRVVLHPDTE----HSKGCAFAQFMTQEAAQKCLAAASLEAE---------GGGLKLDGRQLK   87 (98)
T ss_dssp             CHHHHHHHHHTTSCEEEEECCBCSSSC----CBCSEEEEEESSHHHHHHHHHHHCTTTT---------TCCEESSSCEEE
T ss_pred             CHHHHHHHHhccccceeeeeccccccc----cccceEEEEEcCHHHHHHHHHHcccccc---------cCCcEECCEEEE
Confidence            368899999999999998887654421    1245689999999999999997776654         368999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        88 v~~a   91 (98)
T d1x4ha1          88 VDLA   91 (98)
T ss_dssp             EECC
T ss_pred             EEEC
Confidence            8864

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=2.8e-08  Score=62.29  Aligned_cols=66  Identities=26%  Similarity=0.394  Sum_probs=53.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-++.||+|.++.+.......  .+  .+-.||.|.+.++|+.|+.               .|||..|.|+.|.+
T Consensus        19 ~~~l~~~F~~~G~i~~~~~~~~~~~~--~~--~g~afV~f~~~~~a~~Ai~---------------~l~~~~~~g~~l~V   79 (90)
T d1x5sa1          19 EQSLEQVFSKYGQISEVVVVKDRETQ--RS--RGFGFVTFENIDDAKDAMM---------------AMNGKSVDGRQIRV   79 (90)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCSSSC--SC--CSEEEEECSSHHHHHHHHH---------------HHTTCCTTSCCCEE
T ss_pred             HHHHHHhhhccccccceeeccccccc--cc--cceEEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            57899999999999998876654421  12  3457999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+-+.
T Consensus        80 ~~a~~   84 (90)
T d1x5sa1          80 DQAGK   84 (90)
T ss_dssp             EEEEC
T ss_pred             EEcCC
Confidence            87543

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.63  E-value=7.5e-08  Score=59.96  Aligned_cols=65  Identities=23%  Similarity=0.263  Sum_probs=51.7

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--e
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--R   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R   85 (104)
                      .=++|+++-+++||+|.+|.|+.++.+.    ...+-.||+|.+.++|.+|++               .|||..+.|  |
T Consensus        18 ~te~~l~~~F~~~G~i~~~~~~~d~~~g----~~~g~afV~f~~~~~A~~Ai~---------------~l~g~~~~g~~~   78 (85)
T d1b7fa2          18 ITDDQLDTIFGKYGSIVQKNILRDKLTG----RPRGVAFVRYNKREEAQEAIS---------------ALNNVIPEGGSQ   78 (85)
T ss_dssp             CCHHHHHHHHTSSSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------HHTTCCCTTCSS
T ss_pred             CCHHHHHHHHHhhCCEeeeeeecccccc----cCceeEEEEECCHHHHHHHHH---------------HHCCCEeCCCCe
Confidence            3467899999999999999998765431    224568999999999999999               888887766  6


Q ss_pred             EEEEEE
Q psy2134          86 MVRAEL   91 (104)
Q Consensus        86 ~V~a~~   91 (104)
                      .+++.+
T Consensus        79 ~l~V~~   84 (85)
T d1b7fa2          79 PLSVRL   84 (85)
T ss_dssp             CCEEEE
T ss_pred             EEEEEE
Confidence            677654

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.62  E-value=6.5e-08  Score=64.82  Aligned_cols=65  Identities=23%  Similarity=0.228  Sum_probs=54.6

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++=+++||.|.+|.|..++.+.    .-.+-.||+|.+.++|..|+.               .|||..|.||.|.+
T Consensus        56 e~~l~~~F~~~G~i~~v~i~~d~~t~----~~rg~afV~f~~~~~A~~Ai~---------------~lng~~~~gr~l~V  116 (139)
T d1u6fa1          56 EVQLRQLFERYGPIESVKIVCDRETR----QSRGYGFVKFQSGSSAQQAIA---------------GLNGFNILNKRLKV  116 (139)
T ss_dssp             HHHHHHHHHHHSCEEEEEEEEETTTT----EEEEEEEEEESSHHHHHHHHH---------------HTTTEECSSCEEEE
T ss_pred             HHHHHHHHHhhccccccccccccccc----cccceeeEEECCHHHHHHHHH---------------HhCCCEECCEEEEE
Confidence            57888889999999999998765421    123568999999999999999               99999999999999


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+-.
T Consensus       117 ~~a~  120 (139)
T d1u6fa1         117 ALAA  120 (139)
T ss_dssp             EESS
T ss_pred             EEcC
Confidence            8753

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=6.8e-08  Score=62.04  Aligned_cols=66  Identities=20%  Similarity=0.216  Sum_probs=54.7

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++-+++||.|.+|.|.....+.    .-.+-.||+|.+.++|..|+.               .|||..|.||.|.+
T Consensus        22 e~~l~~~f~~~G~i~~v~i~~~~~tg----~~~g~afV~f~~~~~a~~ai~---------------~l~~~~~~g~~i~V   82 (104)
T d1p1ta_          22 EEQLKDIFSEVGPVVSFRLVYDRETG----KPKGYGFCEYQDQETALSAMR---------------NLNGREFSGRALRV   82 (104)
T ss_dssp             HHHHHHHHHTTSCCSEEEEEEETTTT----EEEEEEEEECSCHHHHHHHHH---------------HSSSBSCSSSCBEE
T ss_pred             HHHHHHhhhcccccccccccccccee----ccCCceEEEECCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            67889899999999999987754421    123558999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+...
T Consensus        83 ~~a~~   87 (104)
T d1p1ta_          83 DNAAS   87 (104)
T ss_dssp             EETTC
T ss_pred             EECCC
Confidence            87543

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1e-07  Score=59.53  Aligned_cols=61  Identities=15%  Similarity=0.096  Sum_probs=50.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-CCeEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF-AGRMV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F-~GR~V   87 (104)
                      =++|+++-+++||.|.++.+...+..        +-.||+|++.++|..|+.               .|||..+ .||.|
T Consensus        23 te~~l~~~F~~~G~v~~~~~~~~~~~--------~~afV~f~~~~~A~~A~~---------------~l~~~~i~~g~~l   79 (88)
T d2adca2          23 SEEDLKVLFSSNGGVVKGFKFFQKDR--------KMALIQMGSVEEAVQALI---------------DLHNHDLGENHHL   79 (88)
T ss_dssp             CHHHHHHHHHTTSCCEEEEEECSSST--------TCEEEEESSHHHHHHHHH---------------HHTTCBSSSSCBC
T ss_pred             CHHHHHHHhhccCCEEEEEEeeeccc--------ceeEEEECCHHHHHHHHH---------------hccCCEecCCCEE
Confidence            36789999999999998877664431        247999999999999999               8999876 58999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      +.+|-
T Consensus        80 ~v~~s   84 (88)
T d2adca2          80 RVSFS   84 (88)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            98863

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=2.5e-07  Score=58.73  Aligned_cols=62  Identities=21%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-++.||.|..+.+.....+       .+-.||+|.+.++|..|+.               .|||-.|.|+.|+
T Consensus        27 t~~~l~~~F~~~G~v~~~~~~~~~~~-------~g~afV~f~~~e~a~~Ai~---------------~l~g~~~~g~~l~   84 (95)
T d1x4aa1          27 RTKDIEDVFYKYGAIRDIDLKNRRGG-------PPFAFVEFEDPRDAEDAVY---------------GRDGYDYDGYRLR   84 (95)
T ss_dssp             CHHHHHHHHGGGSCEEEEEECCSSSS-------SCCEEEEESCHHHHHHHHH---------------HHTTCEETTEECE
T ss_pred             CHHHHHHHHhcCCceEEEEecccccc-------cceEEEEECCHHHHHHHHH---------------HhCCCEECCEEEE
Confidence            46788888999999999888654432       2458999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +++=
T Consensus        85 V~~a   88 (95)
T d1x4aa1          85 VEFP   88 (95)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9863

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=2.6e-07  Score=57.43  Aligned_cols=59  Identities=20%  Similarity=0.174  Sum_probs=51.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|..+.+...+          +-.||+|.+.++|..|+.               .|||..+.||.|.
T Consensus        21 te~~l~~~F~~~g~i~~~~~~~~r----------g~afV~f~~~~~A~~Ai~---------------~l~~~~i~g~~i~   75 (86)
T d2cpda1          21 SEEMIEKEFNNIKPGAVERVKKIR----------DYAFVHFSNREDAVEAMK---------------ALNGKVLDGSPIE   75 (86)
T ss_dssp             CHHHHHHHHHTTSTTCEEEEEECS----------SEEEEEESSHHHHHHHHH---------------HHSSEEETTEEEE
T ss_pred             CHHHHHHhhcccceeeeEEEcccc----------EEEEEEeCCHHHHHHHHH---------------HcCCCEECCEEEE
Confidence            367899999999999887775532          258999999999999999               9999999999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      +.+-
T Consensus        76 V~~a   79 (86)
T d2cpda1          76 VTLA   79 (86)
T ss_dssp             EECC
T ss_pred             EEec
Confidence            9874

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.8e-07  Score=57.69  Aligned_cols=65  Identities=17%  Similarity=0.271  Sum_probs=51.4

Q ss_pred             hhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134          10 YNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      ++|+++-+++||.|.++ .|.....+.  .+  .+-.||+|.+.++|.+|+.               .|||..+.||.|+
T Consensus        12 e~~l~~~F~~~G~i~~~~~i~~~~~~g--~~--~g~afV~f~~~~~a~~Ai~---------------~~~g~~~~gr~l~   72 (83)
T d1x5ta1          12 EKLLYDTFSAFGVILQTPKIMRDPDTG--NS--KGYAFINFASFDASDAAIE---------------AMNGQYLCNRPIT   72 (83)
T ss_dssp             HHHHHHHHHTTSCBSSCCEECCCTTTC--SC--CSEEEEEBSSHHHHHHHHH---------------TTTTCEETTEECE
T ss_pred             HHHHHHHHHHhCceeeeEEEEeecccc--cc--CceEEEEECCHHHHHHHHH---------------hCCCcEECCEEEE
Confidence            67888889999999765 455443321  12  3457999999999999999               9999999999999


Q ss_pred             EEEec
Q psy2134          89 AELYD   93 (104)
Q Consensus        89 a~~yd   93 (104)
                      +.+-.
T Consensus        73 v~~a~   77 (83)
T d1x5ta1          73 VSYAF   77 (83)
T ss_dssp             EEESC
T ss_pred             EEEec
Confidence            98753

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=2.9e-07  Score=59.47  Aligned_cols=66  Identities=21%  Similarity=0.239  Sum_probs=53.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.|...+.+.    ...+-.||+|.+.++|.+|+.               .+|+ .+.||.|
T Consensus        22 ~te~~l~~~F~~~G~i~~v~i~~d~~tg----~~kg~afV~f~~~~~A~~Ai~---------------~~~~-~l~Gr~l   81 (103)
T d2cqda1          22 TTDASLRKYFEGFGDIEEAVVITDRQTG----KSRGYGFVTMADRAAAERACK---------------DPNP-IIDGRKA   81 (103)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEESCCSSSC----CCCSEEEEEESSHHHHHHHHT---------------CSSC-EETTEEC
T ss_pred             CcHHHHHHHHhhcccccceecccccccc----ccCCeEEEEECCHHHHHHHHH---------------HCCC-cCCCEEE
Confidence            3467889889999999999998765421    123468999999999999999               8887 6899999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        82 ~V~~a~   87 (103)
T d2cqda1          82 NVNLAY   87 (103)
T ss_dssp             EEEEST
T ss_pred             EEEEcC
Confidence            987643

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=4.9e-07  Score=55.57  Aligned_cols=62  Identities=10%  Similarity=-0.013  Sum_probs=50.8

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+++++-.+.||+|.+|.|...++.      ..+..||+|++.++|.+|+.                |||..|+|+.|
T Consensus        12 ~t~~~l~~~F~~~G~I~~v~~~~~~~~------~~~~afV~F~~~~~a~~Al~----------------~~~~~i~g~~i   69 (75)
T d2ghpa2          12 YNQNKVYKYFKHCGPIIHVDVADSLKK------NFRFARIEFARYDGALAAIT----------------KTHKVVGQNEI   69 (75)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTS------SSEEEEEEESSHHHHHHHHT----------------TTTCEETTEEC
T ss_pred             CCHHHHHHHHhcCCceEEEEEEeeccc------cceEEEEEEcchHHhHHHHH----------------hcCcEECCEEE
Confidence            346789999999999999999876542      23478999999999999965                68889999998


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ....
T Consensus        70 ~V~~   73 (75)
T d2ghpa2          70 IVSH   73 (75)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8764

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=5.3e-07  Score=56.51  Aligned_cols=62  Identities=16%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -.+|+++-+++||+|..|.|..+...     .-.+-.||+|.+.++|.+|+.                +||..|.||.+.
T Consensus        19 te~~l~~~F~~~G~v~~v~l~~~~~~-----~~kG~afV~f~~~e~a~~al~----------------~~~~~~~g~~l~   77 (85)
T d1zh5a2          19 TLDDIKEWLEDKGQVLNIQMRRTLHK-----AFKGSIFVVFDSIESAKKFVE----------------TPGQKYKETDLL   77 (85)
T ss_dssp             CHHHHHHHHTTSCCEEEEEEEECTTC-----CEEEEEEEEESCHHHHHHHHT----------------CCCCEETTEECE
T ss_pred             CHHHHHHHHHHhcccccceeeeeccC-----CcceEEEEEEcCHHHHHHHHH----------------HCCCEECCEEEE
Confidence            46789999999999999999775432     234679999999999999987                489999999999


Q ss_pred             EEE
Q psy2134          89 AEL   91 (104)
Q Consensus        89 a~~   91 (104)
                      ..+
T Consensus        78 v~~   80 (85)
T d1zh5a2          78 ILF   80 (85)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            874

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=2.4e-07  Score=59.10  Aligned_cols=59  Identities=12%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCC--eEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAG--RMV   87 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G--R~V   87 (104)
                      .+++++-+++||.|.+|.|...+          +..||+|.+.++|.+|++               .|||..+.|  +.|
T Consensus        31 ~~~l~~~f~~~G~i~~~~~~~~~----------~~afV~f~~~~~A~~A~~---------------~l~~~~i~g~~~~l   85 (97)
T d1whya_          31 LAALAREFDRFGSIRTIDHVKGD----------SFAYIQYESLDAAQAACA---------------KMRGFPLGGPDRRL   85 (97)
T ss_dssp             HHHHHHHHHTTSCEEEEEECSSS----------CCEEEEESSHHHHHHHHH---------------HHTTCBCSSSSCBC
T ss_pred             HHHHHHHHHhhcccceEeeeccc----------cEEEeccCCHHHHHHHHH---------------HhCCCEeCCCceEE
Confidence            67899999999999999887543          247999999999999999               888998877  478


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      +..|-.
T Consensus        86 ~v~~ak   91 (97)
T d1whya_          86 RVDFAK   91 (97)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            887643

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=1.7e-07  Score=56.34  Aligned_cols=63  Identities=16%  Similarity=0.212  Sum_probs=49.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||+|..+.+...+++.    ...+-.||+|.+.++|..|+.                |||..|.||.|
T Consensus        11 ~te~~l~~~F~~~G~i~~~~~~~~~~~~----~~~~~afV~F~~~~~a~~al~----------------~~~~~l~gr~i   70 (75)
T d2msta_          11 TTVEDVKHYFEQFGKVDDAMLMFDKTTN----RHRGFGFVTFESEDIVEKVCE----------------IHFHEINNKMV   70 (75)
T ss_dssp             CCHHHHHHHHHTTSCCSEECCBCCTTCT----TSCCEEEEECSCHHHHHHHHH----------------CSSCCBTTBCC
T ss_pred             CCHHHHHHHHHHhCCcceeeeeeecccc----ccCceeEEEECCHHHHHHHHh----------------cCCCEECCeEE
Confidence            4578999999999999998877665432    123568999999999998875                67788888888


Q ss_pred             EEE
Q psy2134          88 RAE   90 (104)
Q Consensus        88 ~a~   90 (104)
                      ++.
T Consensus        71 ~V~   73 (75)
T d2msta_          71 ECK   73 (75)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            764

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=5.3e-08  Score=61.22  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=48.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-.++||.|..+.|...           +-.||+|.+.++|.+|+.               .|||+.|.|+.+.
T Consensus        13 ~~~~l~~~F~~~G~v~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~l~g~~~~g~~i~   66 (87)
T d3begb1          13 SWQDLKDHMREAGDVCYADVYRD-----------GTGVVEFVRKEDMTYAVR---------------KLDNTKFRSHEGE   66 (87)
T ss_dssp             CTTHHHHHHGGGSCEEEEEECTT-----------SEEEEEESSHHHHHHHHH---------------HHTTCBCCCTTSC
T ss_pred             CHHHHHHHHhhhccccccccccc-----------ceeeEEeCCHHHHHHHHH---------------HhCCCEECCcEeE
Confidence            35788888999999999988642           247999999999999999               8888888888877


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..+.
T Consensus        67 v~~~   70 (87)
T d3begb1          67 TAYI   70 (87)
T ss_dssp             CCBC
T ss_pred             EeEE
Confidence            6553

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=1.3e-07  Score=61.09  Aligned_cols=58  Identities=14%  Similarity=0.180  Sum_probs=50.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||.|+++.|...           +..||.|.+.++|.+|++               .|||+.|.||.+.+
T Consensus        29 ~~~L~~~F~~~G~v~~~~i~~~-----------g~afV~f~~~~~a~~Ai~---------------~lng~~~~g~~i~v   82 (98)
T d1wg4a_          29 WQDLKDHMREAGDVCYADVQKD-----------GMGMVEYLRKEDMEYALR---------------KLDDTKFRSHEGET   82 (98)
T ss_dssp             HHHHHHHHTTSSCEEEEEEETT-----------TEEEEEESSHHHHHHHHH---------------HHSSEEEECTTSCE
T ss_pred             HHHHHHHHHhhccccccccccc-----------ceEEEEECCHHHHHHHHH---------------HhCCCEeCCeEEEE
Confidence            5788989999999999988642           358999999999999999               99999999999998


Q ss_pred             EEec
Q psy2134          90 ELYD   93 (104)
Q Consensus        90 ~~yd   93 (104)
                      .+..
T Consensus        83 ~~~~   86 (98)
T d1wg4a_          83 SYIR   86 (98)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8764

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.7e-07  Score=53.87  Aligned_cols=62  Identities=16%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.++.++..+...    ...+-.||.|.+.++|.+|+.                |||..+.||.|.
T Consensus        15 te~~l~~~F~~~G~i~~~~~~~~~~~~----~~~g~afV~f~~~e~~~~al~----------------~~~~~l~Gr~i~   74 (79)
T d1l3ka2          15 EEHHLRDYFEQYGKIEVIEIMTDRGSG----KKRGFAFVTFDDHDSVDKIVI----------------QKYHTVNGHNCE   74 (79)
T ss_dssp             CHHHHHHHHTTTSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH----------------CSCCEETTEECE
T ss_pred             CHHHHHHHHHHhccccccccccCCCCc----ccccEEEEEEcCHHHHHHHHH----------------hCCCEECCEEEE
Confidence            367899999999999999998765532    234678999999987777765                689999999988


Q ss_pred             EE
Q psy2134          89 AE   90 (104)
Q Consensus        89 a~   90 (104)
                      ..
T Consensus        75 V~   76 (79)
T d1l3ka2          75 VR   76 (79)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=7.8e-07  Score=55.59  Aligned_cols=62  Identities=19%  Similarity=0.291  Sum_probs=50.7

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||+|.+|.|..++.+.    .-.+-.||+|.+.++|.+|+.               . +|-.+.||.|.
T Consensus        19 te~~l~~~F~~~G~i~~v~i~~d~~tg----~~kG~afV~f~~~~~a~~ai~---------------~-~~~~i~Gr~i~   78 (84)
T d1l3ka1          19 TDESLRSHFEQWGTLTDCVVMRDPNTK----RSRGFGFVTYATVEEVDAAMN---------------A-RPHKVDGRVVE   78 (84)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH---------------T-CSCEETTEECE
T ss_pred             CHHHHHHHHHhhccccceeecccccCC----CcccEEEEEEcCHHHHHHHHH---------------h-CCCEECCEEEE
Confidence            368899999999999999998765532    235678999999999999988               4 67788899887


Q ss_pred             EE
Q psy2134          89 AE   90 (104)
Q Consensus        89 a~   90 (104)
                      ..
T Consensus        79 V~   80 (84)
T d1l3ka1          79 PK   80 (84)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=98.44  E-value=3.1e-07  Score=56.99  Aligned_cols=59  Identities=14%  Similarity=0.132  Sum_probs=48.2

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee-CCeEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF-AGRMV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F-~GR~V   87 (104)
                      =.+|+.+-.++||.|.+|.|...+.         +-.||+|.+.++|..|++               .|||..+ +|+.|
T Consensus        21 t~~~l~~~f~~~G~i~~v~~~~~~~---------g~afV~f~~~~~A~~A~~---------------~l~g~~~~~~~~i   76 (83)
T d2b0ga1          21 NEMMLSMLFNQFPGFKEVRLVPNRH---------DIAFVEFTTELQSNAAKE---------------ALQGFKITPTHAM   76 (83)
T ss_dssp             CHHHHHHHHTTSTTEEEEEECTTTC---------SCEEEEESSHHHHHHHHH---------------HHTTCBSSTTCBC
T ss_pred             CHHHHHhhhccCccEEEeeeecccc---------eeEEEecCCHHHHHHHHH---------------HhCCcEeCCCcEE
Confidence            3578888899999999998875432         247999999999999999               8888777 46778


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ...|
T Consensus        77 ~v~~   80 (83)
T d2b0ga1          77 KITF   80 (83)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=4.1e-07  Score=57.72  Aligned_cols=61  Identities=20%  Similarity=0.291  Sum_probs=52.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh--cCceeCCe
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL--NGRFFAGR   85 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~GR   85 (104)
                      ..++|+.+-++.||.|.+|.|...+.          ..||+|++.++|..|++               .|  ++-.+.||
T Consensus        21 ~t~~eL~~lF~~fG~I~~i~i~~~k~----------~afV~f~~~~~A~~A~~---------------~l~~~~~~~~gr   75 (89)
T d1x4da1          21 NLRYQLLQLVEPFGVISNHLILNKIN----------EAFIEMATTEDAQAAVD---------------YYTTTPALVFGK   75 (89)
T ss_dssp             SHHHHHHTTTGGGSCEEEEEECSSSS----------CEEEEESSHHHHHHHHH---------------HHHHSCCEETTE
T ss_pred             CCHHHHHHHHHhhCCeEEEEeeccce----------EEEEEEcchhhHHHHHH---------------HHhhCCCccCCc
Confidence            56889999999999999999876543          37999999999999999               55  67899999


Q ss_pred             EEEEEEec
Q psy2134          86 MVRAELYD   93 (104)
Q Consensus        86 ~V~a~~yd   93 (104)
                      .|...|-.
T Consensus        76 ~l~V~~s~   83 (89)
T d1x4da1          76 PVRVHLSQ   83 (89)
T ss_dssp             ECEEEEEC
T ss_pred             eEEEEECC
Confidence            99998753

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3e-07  Score=56.36  Aligned_cols=62  Identities=11%  Similarity=0.151  Sum_probs=48.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||+|.+|.|+..+.+.    ...+-.||+|.+.++|.+|++               . ++-.+.||.|
T Consensus        11 ~te~~l~~~F~~~G~i~~~~i~~d~~t~----~~kg~afV~f~~~~~a~~Al~---------------~-~~~~l~Gr~i   70 (75)
T d1hd0a_          11 TTKKDLKDYFSKFGEVVDCTLKLDPITG----RSRGFGFVLFKESESVDKVMD---------------Q-KEHKLNGKVI   70 (75)
T ss_dssp             CCHHHHHHHHHTTSCEEEEECCCBTTTT----BCCSEEEEEESSHHHHHHHHH---------------T-CCCCBTTBCC
T ss_pred             CCHHHHHHHHHhhccccccccccCCCCC----CcCceEEEEECCHHHHHHHHh---------------c-CCCEECCCEE
Confidence            3468899999999999999998765432    123568999999999999998               4 5666778777


Q ss_pred             EE
Q psy2134          88 RA   89 (104)
Q Consensus        88 ~a   89 (104)
                      .+
T Consensus        71 ~V   72 (75)
T d1hd0a_          71 DP   72 (75)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=3.5e-07  Score=56.62  Aligned_cols=64  Identities=23%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             eehhHHHHHhhhCCceeE-EEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEK-VVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~k-V~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .=++||++-++.||.|.+ +.+.....     ..-.+..||+|++.++|.+|+.               .|||..+.||.
T Consensus        21 ~~~~di~~~F~~~~~~~~~~~~~~~~~-----g~~~G~afV~f~~~e~a~~Ai~---------------~l~~~~l~gr~   80 (86)
T d2cqpa1          21 VSIDEILDFFYGYQVIPGSVCLKYNEK-----GMPTGEAMVAFESRDEATAAVI---------------DLNDRPIGSRK   80 (86)
T ss_dssp             CCHHHHHHHTTTSCCCTTTCEEEECSS-----SCEEEEEEEEESCHHHHHHHHH---------------HTTTCEETTEE
T ss_pred             CCHHHHHHHHhhcccceeEEEEEeCCC-----CCcceEEEEEEcCcHHHHHHHH---------------HcCCCEECCEE
Confidence            346899999999999976 33443222     1235679999999999999999               99999999999


Q ss_pred             EEEEE
Q psy2134          87 VRAEL   91 (104)
Q Consensus        87 V~a~~   91 (104)
                      |+..+
T Consensus        81 i~v~l   85 (86)
T d2cqpa1          81 VKLVL   85 (86)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            98764

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1e-06  Score=55.98  Aligned_cols=65  Identities=14%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =++|+++-+++||.|.+|.|+..+.+.    ...|-.||+|.+.++|.+|+.               .++  .+.||.|.
T Consensus        21 te~~l~~~F~~~G~i~~v~i~~d~~tg----~srG~aFV~f~~~~~a~~al~---------------~~~--~l~Gr~i~   79 (90)
T d2cqga1          21 TEQDLKEYFSTFGEVLMVQVKKDLKTG----HSKGFGFVRFTEYETQVKVMS---------------QRH--MIDGRWCD   79 (90)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECSSSC----SEEEEEEEEESSHHHHHHHHH---------------SCE--EETTEEEE
T ss_pred             CHHHHHHHHHhhcccceeeeccCCCCc----ccCCEEEEEECCHHHHHHHHh---------------cCC--ccCCEEeE
Confidence            467899999999999999998765421    234678999999999999999               554  78999999


Q ss_pred             EEEecc
Q psy2134          89 AELYDQ   94 (104)
Q Consensus        89 a~~yd~   94 (104)
                      +.+-..
T Consensus        80 v~~a~~   85 (90)
T d2cqga1          80 CKLPNS   85 (90)
T ss_dssp             EECCCT
T ss_pred             EEeCCC
Confidence            886543

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1e-06  Score=54.96  Aligned_cols=63  Identities=11%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++|+.+-++.||.|.+|.+...+.          ..||+|.+.++|..|++.+             .+++..+.||.|
T Consensus        20 ~t~~~L~~~f~~~G~i~~v~~~~~~~----------~afV~f~~~e~A~~a~~~~-------------~~~~~~~~g~~l   76 (88)
T d2cq1a1          20 VTETEVIALGLPFGKVTNILMLKGKN----------QAFLELATEEAAITMVNYY-------------SAVTPHLRNQPI   76 (88)
T ss_dssp             CCHHHHHHTTTTTSCEEEEEEETTTT----------EEEEEESSHHHHHHHHHHH-------------HHSCCEETTEEC
T ss_pred             CCHHHHHHHHhcccccccccccccce----------EEEEEeCCHHHHHHHHHHH-------------ccCCCccCCCEE
Confidence            44678888899999999998876432          5899999999999999811             346789999999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      +..|-.
T Consensus        77 ~v~~sk   82 (88)
T d2cq1a1          77 YIQYSN   82 (88)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            998753

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.1e-06  Score=56.64  Aligned_cols=64  Identities=14%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhh--cCceeCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDAL--NGRFFAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~L--nGR~F~GR~   86 (104)
                      =++|+.+-+++||.|.+|.+.+.+.          ..||+|.+.++|..|+.               .|  ++-.+.|+.
T Consensus        28 te~~l~~~F~~fG~I~~~~~~~~k~----------~AfV~f~~~e~A~~ai~---------------~~~~~~~~~~g~~   82 (104)
T d1wexa_          28 VEADLVEALEKFGTICYVMMMPFKR----------QALVEFENIDSAKECVT---------------FAADVPVYIAGQQ   82 (104)
T ss_dssp             CHHHHHHHHTTTSCEEEEEEETTTT----------EEEEEESSHHHHHHHHH---------------HHHHSCCBSSSSB
T ss_pred             CHHHHHHhhhhcccceEEEEEecce----------eEEEEeCCHHHHHHHHH---------------HHcCCCcEEeeEE
Confidence            4678999999999999999986543          48999999999999999               65  455678999


Q ss_pred             EEEEEeccccc
Q psy2134          87 VRAELYDQSLF   97 (104)
Q Consensus        87 V~a~~yd~~~f   97 (104)
                      |...|-.....
T Consensus        83 l~v~~s~~~~~   93 (104)
T d1wexa_          83 AFFNYSTSKRI   93 (104)
T ss_dssp             CEEEECSSSSC
T ss_pred             EEEEEcCCCcc
Confidence            99988755443

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=98.37  E-value=4e-07  Score=57.83  Aligned_cols=62  Identities=16%  Similarity=0.089  Sum_probs=50.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||.|..+....  .       ..+-.||+|.+.++|..|+.               .|||..+.||.|..
T Consensus        30 e~~l~~~F~~~g~v~~~~~~~--~-------~~~~afV~f~~~~~A~~A~~---------------~l~~~~~~gr~i~V   85 (96)
T d1fjca_          30 EDELKEVFEDALEIRLVSQDG--K-------SKGIAYIEFKSEADAEKNLE---------------EKQGAEIDGRSVSL   85 (96)
T ss_dssp             HHHHHHHHCSEEEECCEEETT--E-------EEEEEEEEESSHHHHHHHHH---------------HTTEEEETTEEEEE
T ss_pred             HHHHHHHHHhcccceeeeecC--c-------cccEEEEEeCCHHHHHHHHH---------------HcCCCEECCEEEEE
Confidence            678899999999987654321  1       23568999999999999999               99999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .+-...
T Consensus        86 ~~a~~k   91 (96)
T d1fjca_          86 YYTGEK   91 (96)
T ss_dssp             EECSSS
T ss_pred             EEeCCC
Confidence            976543

>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleoporin 35
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=8.7e-07  Score=56.06  Aligned_cols=52  Identities=19%  Similarity=0.222  Sum_probs=42.5

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      ..+++.+..++||.|.++.+..++          +-+||+|++.++|++|++                |||..|+||.
T Consensus        16 ~~~~il~~F~~~G~I~~~~~~~~~----------~~~fV~f~~~~~A~~Al~----------------~nG~~~~g~~   67 (81)
T d1wwha1          16 SASYILLQFAQYGNILKHVMSNTG----------NWMHIRYQSKLQARKALS----------------KDGRIFGESI   67 (81)
T ss_dssp             GHHHHHHHHHTTSCEEEEEECSSS----------SEEEEEESSHHHHHHHHT----------------TTTCEETTTE
T ss_pred             HHHHHHHHHHhhhhhheEEecCCC----------CEEEEEEcccHHHHHHHh----------------cCCCeECCcE
Confidence            346777789999999998876543          358999999999999986                5788888874

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.32  E-value=3.8e-07  Score=58.75  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=51.0

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      -++|+.+-+++||+|.+|.|...+          +..||+|.+.++|..|++.+             .+|+-.|.||.|.
T Consensus        32 te~~l~~~F~~fG~V~~v~~~~~k----------~~afV~f~~~~~A~~Ai~~~-------------~~~~~~~~gr~l~   88 (99)
T d1x4fa1          32 SDSAVLKLAEPYGKIKNYILMRMK----------SQAFIEMETREDAMAMVDHC-------------LKKALWFQGRCVK   88 (99)
T ss_dssp             CSHHHHTTTTTTSCCSEEEEETTT----------TEEEEECSSHHHHHHHHHHH-------------HHSCCCSSSSCCE
T ss_pred             CHHHHHhhhccccceeEEEEeecC----------CcEEEEecchHHHHHHHHHH-------------hcCCceECCEEEE
Confidence            357899999999999999997643          26899999999999999711             4778899999999


Q ss_pred             EEEe
Q psy2134          89 AELY   92 (104)
Q Consensus        89 a~~y   92 (104)
                      ..|-
T Consensus        89 V~~s   92 (99)
T d1x4fa1          89 VDLS   92 (99)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9864

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.4e-06  Score=56.42  Aligned_cols=64  Identities=22%  Similarity=0.253  Sum_probs=51.1

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-.+.||.|.+|.|...+.+.  .+  .|-.||+|++.++|.+|+.                |||..|.|+.|
T Consensus        30 ~te~~l~~~F~~~G~V~~v~i~~d~~tg--~~--kG~afV~F~~~e~a~~A~~----------------l~g~~~~G~~l   89 (101)
T d2cq4a1          30 IRPRDLEDFFSAVGKVRDVRIISDRNSR--RS--KGIAYVEFCEIQSVPLAIG----------------LTGQRLLGVPI   89 (101)
T ss_dssp             CCHHHHHHHHTTTSCEEEEEECCSCCSS--SC--CCCEEEEESCGGGHHHHHH----------------HTTEEETTEEE
T ss_pred             CCHHHHHHHHcCCCeEEEEEeeecCCCc--cc--cceEEEEECCHHHHHHHHH----------------HCCCEECCEEE
Confidence            3467889889999999999998765431  12  3457999999999999864                78888899999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      .+.+
T Consensus        90 ~V~~   93 (101)
T d2cq4a1          90 IVQA   93 (101)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9875

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.8e-07  Score=57.07  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=50.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCce-eCCeEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRF-FAGRMV   87 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~-F~GR~V   87 (104)
                      =++|+++-.++||.|..+.+...+          +-.||+|.+.++|.+|++               .|||+. +.|+.|
T Consensus        14 te~~L~~~F~~~G~i~~~~~~~~r----------g~aFV~f~~~~~A~~Ai~---------------~lng~~~~~G~~i   68 (80)
T d2cqha1          14 TADDLRQLFGDRKLPLAGQVLLKS----------GYAFVDYPDQNWAIRAIE---------------TLSGKVELHGKIM   68 (80)
T ss_dssp             CHHHHHHHHHHTTCCCSSCEEEET----------TEEEECCSCHHHHHHHHH---------------HHTTTCEETTEEC
T ss_pred             CHHHHHHHHHHhCcEEEeEEeccc----------ceEEEEECCHHHHHHHHH---------------HhCCCeEECCEEE
Confidence            367888889999999776665432          257999999999999999               999985 999999


Q ss_pred             EEEEecc
Q psy2134          88 RAELYDQ   94 (104)
Q Consensus        88 ~a~~yd~   94 (104)
                      ..++-.+
T Consensus        69 ~V~~a~~   75 (80)
T d2cqha1          69 EVDYSVS   75 (80)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9987543

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.1e-06  Score=57.19  Aligned_cols=65  Identities=22%  Similarity=0.243  Sum_probs=52.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|..|.|..++.+.    ...+-.||+|.+.++|..|+.                +||-.+.||.|
T Consensus        32 ~te~~L~~~F~~~G~i~~~~i~~d~~~~----~~kg~aFV~f~~~~~a~~al~----------------~~~~~l~G~~i   91 (103)
T d1x4ba1          32 TTEESLRNYYEQWGKLTDCVVMRDPASK----RSRGFGFVTFSSMAEVDAAMA----------------ARPHSIDGRVV   91 (103)
T ss_dssp             CCHHHHHHHHTSSCCCSEEEEECCTTTS----SCCSEEEEECSSHHHHHHHHT----------------SCSEEETTEEE
T ss_pred             CCHHHHHHHHHhhCcccceeecccccCC----CccCeEEEEECCHHHHHHHHH----------------hCCCeECCEEE
Confidence            4468999999999999999998765431    234568999999999998876                58888999999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      .+.+-
T Consensus        92 ~V~~a   96 (103)
T d1x4ba1          92 EPKRA   96 (103)
T ss_dssp             EEECC
T ss_pred             EEEEC
Confidence            98753

>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1, Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Ribonucleoprotein PTB-binding 1, Raver-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=2.6e-06  Score=52.22  Aligned_cols=62  Identities=18%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++=.++|| +..+.+...+          +-.||.|.+.++|.+|++               .|||+.+.||.+
T Consensus        10 ~t~~~l~~~F~~~g-~~~~~~~~~~----------g~afv~f~~~~~A~~Ai~---------------~ln~~~~~g~~l   63 (75)
T d1wi6a1          10 VTNQEVHDLLSDYE-LKYCFVDKYK----------GTAFVTLLNGEQAEAAIN---------------TFHQSRLREREL   63 (75)
T ss_dssp             CCHHHHHHHTTTSC-EEEEEEETTT----------TEEEEEESSHHHHHHHHH---------------HHTTEESSSCEE
T ss_pred             CCHHHHHHHHhccc-ccceeecccc----------eeEEEEECCHHHHHHHHH---------------HhCCccCCCCEE
Confidence            44678888899999 4444443322          247999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+++-+.+
T Consensus        64 ~V~~a~~d   71 (75)
T d1wi6a1          64 SVQLQPTD   71 (75)
T ss_dssp             EEEECCST
T ss_pred             EEEEeCCC
Confidence            99987654

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=1.1e-06  Score=56.21  Aligned_cols=61  Identities=16%  Similarity=0.138  Sum_probs=48.4

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+|+++-.+.||.|..+.+......     ...+-.||+|.+.++|.+|++               .|||+.+.||.+.
T Consensus        31 te~~L~~~F~~~G~i~~~~~~~~~~~-----~~~g~afV~f~~~~~A~~Ai~---------------~lng~~i~gr~~~   90 (101)
T d1x5oa1          31 DEQELENMLKPFGQVISTRILRDSSG-----TSRGVGFARMESTEKCEAVIG---------------HFNGKFIKTPPGV   90 (101)
T ss_dssp             CHHHHHHTTTTTSCEEEEEEEECSSS-----CEEEEEEEEESCHHHHHHHHH---------------HHBTCCCCCCTTS
T ss_pred             CHHHHHHHHhhcccccceeeeccccc-----ccccceeEEeCCHHHHHHHHH---------------HhCCCEECCcCCc
Confidence            35788888999999999888765321     235678999999999999999               7888888887654


Q ss_pred             E
Q psy2134          89 A   89 (104)
Q Consensus        89 a   89 (104)
                      .
T Consensus        91 v   91 (101)
T d1x5oa1          91 S   91 (101)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein KIAA1579
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.1e-06  Score=55.28  Aligned_cols=62  Identities=16%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-.+|+++-+++||.. .+.+...+          +-.||+|.+.++|..|++               .|||..+.||.|
T Consensus        17 ~t~~~l~~lF~~~G~~-~~~~~~~k----------g~afV~f~~~~~A~~Ai~---------------~ln~~~~~G~~l   70 (88)
T d1wg1a_          17 SNCQEVHDLLKDYDLK-YCYVDRNK----------RTAFVTLLNGEQAQNAIQ---------------MFHQYSFRGKDL   70 (88)
T ss_dssp             CCHHHHHHHTCSSCCC-CEEEEGGG----------TEEEECCSCHHHHHHHHH---------------HHTTEEETTEEE
T ss_pred             cChHHHHHHHHhcCce-eeeeeccC----------CceEEEECCHHHHHHHHH---------------HhCCCEECCEEE
Confidence            4468899999999932 24444322          357999999999999999               999999999999


Q ss_pred             EEEEeccc
Q psy2134          88 RAELYDQS   95 (104)
Q Consensus        88 ~a~~yd~~   95 (104)
                      .+++-+..
T Consensus        71 ~V~~a~~~   78 (88)
T d1wg1a_          71 IVQLQPTD   78 (88)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCC
Confidence            99986544

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=3.5e-07  Score=56.63  Aligned_cols=63  Identities=8%  Similarity=0.074  Sum_probs=48.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++++++-+++||+|.+|.|+.++.+.    ...|-.||+|++.++|.+|+.               . ++..+.|+.|
T Consensus        11 ~te~~l~~~F~~~G~I~~v~i~~d~~t~----~~rG~~FV~f~~~~~a~~al~---------------~-~~~~i~g~~i   70 (75)
T d1x0fa1          11 TPEEKIREYFGGFGEVESIELPMDNKTN----KRRGFCFITFKEEEPVKKIME---------------K-KYHNVGLSKC   70 (75)
T ss_dssp             CCHHHHHHHHHHHSCEEEEECCCCTTTC----CTTCCEEEEESSSHHHHHHTT---------------C-SSCCBTTBCC
T ss_pred             CCHHHHHHHHHHhCCccccccccccccc----ccccEEEEEECCHHHHHHHHh---------------h-CCCEECCEEe
Confidence            4468999999999999999998765432    123458999999999999987               3 5566777777


Q ss_pred             EEE
Q psy2134          88 RAE   90 (104)
Q Consensus        88 ~a~   90 (104)
                      ...
T Consensus        71 ~vk   73 (75)
T d1x0fa1          71 EIK   73 (75)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.6e-07  Score=55.69  Aligned_cols=63  Identities=10%  Similarity=0.124  Sum_probs=49.3

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .-++++++-+++||+|++|.|+.++.+.  .+  .+-.||+|++.++|.+|+.               . ||..+.||.|
T Consensus        12 ~te~~l~~~F~~~G~i~~v~i~~d~~tg--~~--kG~aFV~f~~~~~a~~al~---------------~-~~~~i~Gr~i   71 (77)
T d1uawa_          12 TTQEGLREYFGQFGEVKECLVMRDPLTK--RS--RGFGFVTFMDQAGVDKVLA---------------Q-SRHELDSKTI   71 (77)
T ss_dssp             CCSHHHHHHHTTTSCCCCEEEECCCCSS--SC--SSEEEECCCCTTHHHHHHH---------------T-TTCCCSSCCC
T ss_pred             CCHHHHHHHHHHhCCcceeeeecccCCC--Cc--cceEEEEECCHHHHHHHHH---------------c-CCCEECCeEE
Confidence            3457899999999999999998765532  12  3457999999999999998               4 7777788877


Q ss_pred             EEE
Q psy2134          88 RAE   90 (104)
Q Consensus        88 ~a~   90 (104)
                      ...
T Consensus        72 ~V~   74 (77)
T d1uawa_          72 DPK   74 (77)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.1e-07  Score=60.42  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      .+|+++-+++||.|.++.|.....+.    ...+-.||+|.+.++|..|+.               .|||..|.|+.|.+
T Consensus        32 ~~~l~~~f~~~G~v~~~~~~~~~~~g----~~~g~~fV~f~~~~~A~~Ai~---------------~l~g~~~~g~~l~V   92 (102)
T d2cpxa1          32 ERDLVSLFARFQEKKGPPIQFRMMTG----RMRGQAFITFPNKEIAWQALH---------------LVNGYKLYGKILVI   92 (102)
T ss_dssp             HHHHHHHTHHHHHSSSSCCEEEEECS----SSCSEEEEECSSHHHHHHHHH---------------HSTTCBCSSCBCEE
T ss_pred             HHHHHHHHhhccceeeEEeecccccc----cccccceEEeccHHHHHHHHH---------------HhCCCEECCEEEEE
Confidence            57888889999999987775432211    123467999999999999999               99999999999999


Q ss_pred             EEecc
Q psy2134          90 ELYDQ   94 (104)
Q Consensus        90 ~~yd~   94 (104)
                      .+-..
T Consensus        93 ~~ak~   97 (102)
T d2cpxa1          93 EFGKN   97 (102)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            87643

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=1.1e-06  Score=57.10  Aligned_cols=51  Identities=24%  Similarity=0.237  Sum_probs=42.6

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCcee
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFF   82 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F   82 (104)
                      ..=++|+++-+++||.|.+|.+...+.          ..||+|.+.++|..|++               .|||+.+
T Consensus        31 ~vte~~L~~~F~~~G~i~~i~~~~~k~----------~aFV~f~~~e~A~~A~~---------------~lng~~i   81 (101)
T d2cq2a1          31 GVSRNQLLPVLEKCGLVDALLMPPNKP----------YSFARYRTTEESKRAYV---------------TLNGKEV   81 (101)
T ss_dssp             TCCHHHHHHHHHHHSCEEEEECCTTCS----------CEEEEESSHHHHHHHHH---------------HTTTCEE
T ss_pred             CCCHHHHHHHHHhhCcccEEeeccCcc----------EEEEEECCHHHHHHHHH---------------HhCCCCC
Confidence            345788999999999999987765432          58999999999999999               8888765

>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein EWS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.7e-06  Score=53.51  Aligned_cols=70  Identities=19%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCC---Cc-ccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQS---DD-EASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~---~~-~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      .=++|+++=++.||+|..+.+......   .+ ......+-.||+|.+.++|.+|+.               .|||..|.
T Consensus        20 ~te~~l~~~F~~~G~i~~~~~~~~~~~~~~~d~~~~~~~g~afV~f~~~~~a~~Ai~---------------~l~g~~~~   84 (101)
T d2cpea1          20 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE---------------WFDGKDFQ   84 (101)
T ss_dssp             CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH---------------HHTTCEET
T ss_pred             CCHHHHHHHHHHCceEEEeeecccceeEEeeccccccccceeeEEecCHHHHHHHHH---------------HhCCCEEC
Confidence            346788888999999864332221110   00 001223568999999999999999               99999999


Q ss_pred             CeEEEEEEe
Q psy2134          84 GRMVRAELY   92 (104)
Q Consensus        84 GR~V~a~~y   92 (104)
                      ||.|.+.+-
T Consensus        85 gr~i~V~~a   93 (101)
T d2cpea1          85 GSKLKVSLA   93 (101)
T ss_dssp             TEECEEECS
T ss_pred             CEEEEEEEc
Confidence            999999864

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.7e-05  Score=50.24  Aligned_cols=66  Identities=12%  Similarity=0.141  Sum_probs=49.2

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++|+++-.++|| ++++.|........   ...+-.||+|.+.++|+ |..               .|||..+.||.|+.
T Consensus        29 e~~l~~~f~~~g-~~~~~~~~~~~~~g---~~~g~afV~f~~~e~a~-~~~---------------~~~~~~~~gr~l~V   88 (104)
T d1wi8a_          29 EESIKEFFRGLN-ISAVRLPREPSNPE---RLKGFGYAEFEDLDSLL-SAL---------------SLNEESLGNKRIRV   88 (104)
T ss_dssp             HHHHHHHTTTSC-EEEEECCBCSSCTT---SBCSCEEEEESSHHHHH-HHH---------------GGGTCEETTEECEE
T ss_pred             HHHHHHHHHHhc-cccceeeeeeccCC---CcceeeeEEECCHHHHH-HHH---------------HcCCCEECCEEEEE
Confidence            578888899999 66676765443211   12346899999999986 556               68999999999999


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .+-.+.
T Consensus        89 ~~a~~~   94 (104)
T d1wi8a_          89 DVADQA   94 (104)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            876543

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.9e-06  Score=52.41  Aligned_cols=60  Identities=22%  Similarity=0.176  Sum_probs=48.0

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=++|+++-+++||.|.+|.+...+.         +-.||+|.+.++|+.|+.                 ||-.+.||.|
T Consensus        17 ~te~~L~~~F~~~G~v~~v~~~~~~~---------gfafV~f~~~~~a~~a~~-----------------~~~~i~g~~l   70 (88)
T d1wf0a_          17 MTEDELREFFSQYGDVMDVFIPKPFR---------AFAFVTFADDQIAQSLCG-----------------EDLIIKGISV   70 (88)
T ss_dssp             SCHHHHHHHSTTTSCCCEEECCSSCC---------SCCEEECSCHHHHHHTTT-----------------CEEEETTEEE
T ss_pred             CCHHHHHHHHHHcCCceEEEEeeccC---------ceEEEEECCHHHHHHHHh-----------------CCCEECCEEe
Confidence            34689999999999999987754322         247999999999998876                 5678899999


Q ss_pred             EEEEec
Q psy2134          88 RAELYD   93 (104)
Q Consensus        88 ~a~~yd   93 (104)
                      .+.+-.
T Consensus        71 ~v~~a~   76 (88)
T d1wf0a_          71 HISNAE   76 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            998764

>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.4e-05  Score=49.94  Aligned_cols=68  Identities=13%  Similarity=-0.016  Sum_probs=51.0

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++||++=++.+|.|..+++......  .  .-.+-.||+|++.++|.+|+.                |||..+.||.|..
T Consensus        29 e~dI~~~F~~~g~v~~~v~~~~~~~--~--~~kG~afV~F~~~e~a~~a~~----------------~~~~~i~gR~i~V   88 (104)
T d1wg5a_          29 KEEIVQFFSGLEIVPNGMTLPVDFQ--G--RSTGEAFVQFASQEIAEKALK----------------KHKERIGHRYIEI   88 (104)
T ss_dssp             HHHHHHHTTTCCEEEEEEECCBCSS--S--CBCSEEEEEESSHHHHHHHHT----------------TTTCCSSSSCCEE
T ss_pred             HHHHHHHHHhcCCceEEEEEEeCCC--C--CcceEEEEEeCCHHHHHHHHh----------------hCCCEEcceEEEE
Confidence            6789988999999987555443332  1  223568999999999987765                6788889999998


Q ss_pred             EEeccccc
Q psy2134          90 ELYDQSLF   97 (104)
Q Consensus        90 ~~yd~~~f   97 (104)
                      ..-.....
T Consensus        89 ~~~~~~~~   96 (104)
T d1wg5a_          89 FKSSRAEV   96 (104)
T ss_dssp             EEECTTTS
T ss_pred             EECCHHHh
Confidence            87766543

>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hypothetical protein FLJ20273
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=2.2e-05  Score=49.29  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=51.1

Q ss_pred             eehhHHHHHhhhCCc-eeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCc--eeCC
Q psy2134           8 VIYNEKQSDDEAYGQ-VEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGR--FFAG   84 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~-V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR--~F~G   84 (104)
                      .-++++++-.++||. |..|.|+......   ....+-.||+|.+.++|..|++               .|++-  .+.|
T Consensus        13 ~te~~l~~~f~~~g~~i~~v~~~~~~~~~---~~~rg~aFV~F~~~~~A~~Ai~---------------~l~~~~~~~~g   74 (96)
T d2disa1          13 KKREEILEEIAKVTEGVLDVIVYASAADK---MKNRGFAFVEYESHRAAAMARR---------------KLMPGRIQLWG   74 (96)
T ss_dssp             SCHHHHHHHHHHHSTTEEEEECCSSSCTT---TTTCCEEEEEESSHHHHHHHHT---------------TTTTCCSCBTT
T ss_pred             CCHHHHHHHHHHhCCcceEEEEeeecccc---ccCCCeEEEEEcCHHHHHHHHH---------------HHcCCCeEECC
Confidence            346788888999995 9999888654321   1234578999999999999999               66543  3468


Q ss_pred             eEEEEEEecc
Q psy2134          85 RMVRAELYDQ   94 (104)
Q Consensus        85 R~V~a~~yd~   94 (104)
                      +.|...+-.+
T Consensus        75 ~~i~V~~A~p   84 (96)
T d2disa1          75 HQIAVDWAEP   84 (96)
T ss_dssp             BCCEEEESCS
T ss_pred             EEEEEEEcCC
Confidence            8888887643

>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.7e-05  Score=50.36  Aligned_cols=66  Identities=12%  Similarity=0.110  Sum_probs=49.0

Q ss_pred             eehhHHHHHhhhCCceeEE-EEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeE
Q psy2134           8 VIYNEKQSDDEAYGQVEKV-VIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRM   86 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV-~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~   86 (104)
                      .-++||++=.+.||.|... .+......     ...+-.||+|.+.++|.+|+.                |||..|.||.
T Consensus        20 ~t~~~l~~~F~~~g~i~~~~~~~~~~~g-----~~~G~afV~F~s~~~a~~Al~----------------~n~~~i~gr~   78 (103)
T d2cpya1          20 ITKMDVLQFLEGIPVDENAVHVLVDNNG-----QGLGQALVQFKNEDDARKSER----------------LHRKKLNGRE   78 (103)
T ss_dssp             SCHHHHHHHTTTSCCCSTTEEECCCTTS-----SCSSCEEEECSSHHHHHHHGG----------------GCSEEETTEE
T ss_pred             CCHHHHhhhhcccceEEEEEEEEeCCCC-----CcCccEEEEECCHHHHHHHHh----------------cCCCeECCcE
Confidence            3468899889999998763 34332221     124568999999999999976                6888889999


Q ss_pred             EEEEEecc
Q psy2134          87 VRAELYDQ   94 (104)
Q Consensus        87 V~a~~yd~   94 (104)
                      |....-+.
T Consensus        79 i~V~~~~~   86 (103)
T d2cpya1          79 AFVHVVTL   86 (103)
T ss_dssp             EEEEEECH
T ss_pred             EEEEECCH
Confidence            99876543

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=8.3e-05  Score=49.79  Aligned_cols=63  Identities=16%  Similarity=0.147  Sum_probs=50.3

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+++++-++.||.|..+.|.....+.    ...+-.||.|.+.++|.+|+.               . +|-.+.|+.|.
T Consensus       110 te~~L~~~f~~~G~v~~~~i~~~~~~~----~~~g~~fV~f~~~e~A~~Al~---------------~-~~~~~~G~~i~  169 (183)
T d1u1qa_         110 EEHHLRDYFEQYGKIEVIEIMTDRGSG----KKRGFAFVTFDDHDSVDKIVI---------------Q-KYHTVNGHNCE  169 (183)
T ss_dssp             CHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESCHHHHHHHHT---------------S-SCEEETTEEEE
T ss_pred             CHHHHhhhhccCCceeeeeeecccccC----ccceeEEEEECCHHHHHHHHH---------------h-CCCeECCEEEE
Confidence            357888899999999999888754421    234678999999999999987               3 66778899998


Q ss_pred             EEE
Q psy2134          89 AEL   91 (104)
Q Consensus        89 a~~   91 (104)
                      +..
T Consensus       170 V~~  172 (183)
T d1u1qa_         170 VRK  172 (183)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            875

>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein H'
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.3e-05  Score=50.00  Aligned_cols=64  Identities=17%  Similarity=0.048  Sum_probs=48.9

Q ss_pred             hhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEEE
Q psy2134          10 YNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVRA   89 (104)
Q Consensus        10 ~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~a   89 (104)
                      ++||++-++.+|.+ +|.+......     ...+-.||+|.+.++|++|+.                |||..+.||.|+.
T Consensus        29 e~dl~~~F~~~~~~-~v~~~~~~~g-----~~~G~afVeF~~~~~a~~Al~----------------~~~~~i~gR~I~V   86 (102)
T d1weza_          29 ENDIYNFFSPLNPM-RVHIEIGPDG-----RVTGEADVEFATHEDAVAAMA----------------KDKANMQHRYVEL   86 (102)
T ss_dssp             HHHHHHSSCSCCCS-EEEEEESSSS-----CEEEEEEEECSSSHHHHHHHT----------------TSSCCSSSSCCEE
T ss_pred             HHHHHHHHhccCcc-eeeeEEecCC-----cceEEEEEEECCHHHHHHHHH----------------cCCCEECCEEEEE
Confidence            67888888899855 5666554331     235678999999999999955                6899999999998


Q ss_pred             EEeccc
Q psy2134          90 ELYDQS   95 (104)
Q Consensus        90 ~~yd~~   95 (104)
                      .+-...
T Consensus        87 ~~s~~~   92 (102)
T d1weza_          87 FLNSTA   92 (102)
T ss_dssp             EEECCC
T ss_pred             EEcCCC
Confidence            876543

>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=97.76  E-value=2.9e-06  Score=53.71  Aligned_cols=64  Identities=14%  Similarity=0.081  Sum_probs=49.2

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .=.+|+++-+++||.|.++.|.....     ....+-.||+|.+.++|.+|+.                |||..+.||.|
T Consensus        25 ~te~~l~~~F~~~G~i~~~~v~~~~~-----g~~kg~afv~F~~~e~a~~Al~----------------~~g~~~~g~~i   83 (91)
T d1fjeb1          25 KSVAELKVAISELFAKNDLAVVDVRT-----GTNRKFGYVDFESAEDLEKALE----------------LTGLKVFGNEI   83 (91)
T ss_dssp             SCHHHHHHHHHHHHHHHTCCCCEEEE-----ETTTTEEEEEESSHHHHHHHHH----------------GGGEEETTEEE
T ss_pred             chHHHHHHHHhcCCcEEEeeeeecCC-----CCccEEeEEeeCCHHHHHHHHh----------------cCCcEECCEEE
Confidence            44688999999999998877753321     1123468999999999999976                68888899999


Q ss_pred             EEEEe
Q psy2134          88 RAELY   92 (104)
Q Consensus        88 ~a~~y   92 (104)
                      ...+-
T Consensus        84 ~V~~a   88 (91)
T d1fjeb1          84 KLEKP   88 (91)
T ss_dssp             EEECC
T ss_pred             EEEec
Confidence            88753

>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.5e-05  Score=51.83  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=48.8

Q ss_pred             ehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEEE
Q psy2134           9 IYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMVR   88 (104)
Q Consensus         9 i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V~   88 (104)
                      =.+||++=++.+|.|..+.+......    ....|-.||+|.+.++|.+|+.                |||..++||.|.
T Consensus        31 t~~di~~~F~~~g~~~~~~~~~~~~~----g~~~G~afVeF~~~e~a~~al~----------------~~~~~i~gR~i~   90 (112)
T d1wela1          31 ENKHVIDFFKKLDIVEDSIYIAYGPN----GKATGEGFVEFRNEADYKAALC----------------RHKQYMGNRFIQ   90 (112)
T ss_dssp             CHHHHHHHSCSSCBCTTTCEEEECTT----SSEEEEEEEEBSSSHHHHHHHT----------------SCSBCSTTSCBE
T ss_pred             cHHHHhhHHhhccccccceeeecCcc----cceeeEEEEEECCHHHHHHHHH----------------cCCCcCCCEEEE
Confidence            35788888999999876444332221    1346789999999999997776                678888899888


Q ss_pred             EEEeccc
Q psy2134          89 AELYDQS   95 (104)
Q Consensus        89 a~~yd~~   95 (104)
                      +..-+..
T Consensus        91 V~~~~~~   97 (112)
T d1wela1          91 VHPITKK   97 (112)
T ss_dssp             EEEECHH
T ss_pred             EEEcChH
Confidence            8765443

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=4.9e-05  Score=49.51  Aligned_cols=58  Identities=10%  Similarity=-0.021  Sum_probs=44.3

Q ss_pred             hheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCH-HHHHHHHHhhccchhhhhhhhhhhhcCceeCC
Q psy2134           6 KVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKM-QEAEYARDALNGRFFAEAEYARDALNGRFFAG   84 (104)
Q Consensus         6 rv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~-~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~G   84 (104)
                      ...=++++++-+++||+|..|.|....          +--||.|++. ++|..|+.               .|||..+.+
T Consensus        21 ~~~tee~Lk~~F~~fG~V~~v~i~~~k----------g~gfV~F~~~~~~A~~a~~---------------~~~~~~l~~   75 (113)
T d1owxa_          21 DQTCREDLHILFSNHGEIKWIDFVRGA----------KEGIILFKEKAKEALGKAK---------------DANNGNLQL   75 (113)
T ss_dssp             SSCCHHHHHHHTCSSCCEEEEECCTTC----------SEEEEEESSCHHHHHHHHH---------------HTTTSCBCT
T ss_pred             CCCCHHHHHHHHHhcCChheEEEecCC----------ceEEEEecCcHHHHHHHHH---------------HhcCCceec
Confidence            345578899999999999999987532          3579999986 78999999               677766655


Q ss_pred             eEEE
Q psy2134          85 RMVR   88 (104)
Q Consensus        85 R~V~   88 (104)
                      +.+.
T Consensus        76 ~~~~   79 (113)
T d1owxa_          76 RNKE   79 (113)
T ss_dssp             TSSS
T ss_pred             CceE
Confidence            5443

>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Limkain-b1, LKAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00023  Score=45.65  Aligned_cols=68  Identities=16%  Similarity=0.155  Sum_probs=57.6

Q ss_pred             eehheehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeC
Q psy2134           4 VEKVVIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFA   83 (104)
Q Consensus         4 verv~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~   83 (104)
                      ..+.+|.+=+.+=..++|+|.+|.|+...       ++..+.-|+..++++|..|+.               .|+-|.++
T Consensus         4 L~~kelqq~L~~~f~~h~~V~sv~l~~~~-------dg~~~A~V~v~~~q~A~~~v~---------------~LhR~KiG   61 (73)
T d2dgxa1           4 LSRKELQQLLQEAFARHGKVKSVELSPHT-------DYQLKAVVQMENLQDAIGAVN---------------SLHRYKIG   61 (73)
T ss_dssp             SCHHHHHHHHHHHHHHHSCEEEEEECSCC-------STTCCEEEEESSHHHHHHHHH---------------HHTTEEET
T ss_pred             CCHHHHHHHHHHHHHhheeEEEEEEEecc-------CCcEEEEEEcCCHHHHHHHHH---------------HHHHHhcC
Confidence            34677888888889999999999997643       345567789999999999999               99999999


Q ss_pred             CeEEEEEEec
Q psy2134          84 GRMVRAELYD   93 (104)
Q Consensus        84 GR~V~a~~yd   93 (104)
                      ++.|...|-.
T Consensus        62 ~KRI~Vs~~~   71 (73)
T d2dgxa1          62 SKKILVSLAT   71 (73)
T ss_dssp             TEEEEEEECC
T ss_pred             CeEEEEEEec
Confidence            9999988754

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.0053  Score=40.57  Aligned_cols=49  Identities=16%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHH
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARD   60 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~   60 (104)
                      .=++|+++-+++||.|.++.|..+....    ...+..||.|.+.++|.+|+.
T Consensus        18 ~te~~L~~~F~~~G~v~~~~~~~~~~~~----~~~g~afv~f~~~~~a~~a~~   66 (183)
T d1u1qa_          18 TTDESLRSHFEQWGTLTDCVVMRDPNTK----RSRGFGFVTYATVEEVDAAMN   66 (183)
T ss_dssp             CCHHHHHHHHGGGSCEEEEEEEECTTTC----CEEEEEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCEEEEEeeecccCC----CccCceecccCCHHHHHHHHH
Confidence            4467899999999999999987654421    234678999999999999988

>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=2.4e-05  Score=48.50  Aligned_cols=68  Identities=13%  Similarity=0.102  Sum_probs=46.1

Q ss_pred             heehhHHHHHhhhCCceeEEEEecCCCCCc-ccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCe
Q psy2134           7 VVIYNEKQSDDEAYGQVEKVVIYNEKQSDD-EASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGR   85 (104)
Q Consensus         7 v~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~-~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR   85 (104)
                      ..=++|+++-.++||.|.++.+.......+ ......+-.||+|++.++|.+|+                .|||..|.||
T Consensus        12 ~~te~~l~~~F~~~g~~~~~~~~~~~~~~~~~~~~~kg~afV~f~~~e~a~~a~----------------~l~g~~~~Gr   75 (90)
T d1u2fa_          12 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM----------------AFDGIIFQGQ   75 (90)
T ss_dssp             TCCTTHHHHHHHHHHTTTTSCCSSSCSEEECCEETTTTEEEEEESSCTTTTTGG----------------GGSSCCSSSS
T ss_pred             ccchHHHHHHHHhhCcEEEEEEeccceeeecccCCCceEEEEEeCCHHHHHHHH----------------hhCCcEECCE
Confidence            345688999999999998766643221100 01112345899999999999884                4677777888


Q ss_pred             EEEEE
Q psy2134          86 MVRAE   90 (104)
Q Consensus        86 ~V~a~   90 (104)
                      .|+..
T Consensus        76 ~l~V~   80 (90)
T d1u2fa_          76 SLKIR   80 (90)
T ss_dssp             CCCCB
T ss_pred             EEEEC
Confidence            77753

>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Synaptojanin 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.018  Score=38.16  Aligned_cols=56  Identities=23%  Similarity=0.298  Sum_probs=47.4

Q ss_pred             eehhHHHHHhhhCCceeEEEEecCCCCCcccccceEEEEEEeCCHHHHHHHHHhhccchhhhhhhhhhhhcCceeCCeEE
Q psy2134           8 VIYNEKQSDDEAYGQVEKVVIYNEKQSDDEASEVIVKIFVSFSKMQEAEYARDALNGRFFAEAEYARDALNGRFFAGRMV   87 (104)
Q Consensus         8 ~i~~ev~~Ec~kyG~V~kV~I~~~~~~~~~~~~~~vkifV~F~~~~~A~~A~~~~~~r~f~~~~~~~~~LnGR~F~GR~V   87 (104)
                      .|..++-+++..||.|+-|....+            +++|.|.+-++|..|++                |+|-.+.|+.+
T Consensus        36 ~l~~~Llq~l~~~GeViLvRFv~d------------~mwVTF~dG~SAL~al~----------------l~g~~v~G~~l   87 (95)
T d1ufwa_          36 DLRTELMQTLGSYGTIVLVRINQG------------QMLVTFADSHSALSVLD----------------VDGMKVKGRAV   87 (95)
T ss_dssp             HHHHHHHHHHHHHSCCSEEEEETT------------EEEEECSCSHHHHHHHH----------------GGGSEETTEEE
T ss_pred             HHHHHHHHHHhhCCeEEEEEEeCC------------eEEEEECCcHHHHHHhc----------------cCCeEEcceEE
Confidence            356788889999999987776542            58999999999999987                89999999999


Q ss_pred             EEEE
Q psy2134          88 RAEL   91 (104)
Q Consensus        88 ~a~~   91 (104)
                      ....
T Consensus        88 ~It~   91 (95)
T d1ufwa_          88 KISG   91 (95)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8654