Psyllid ID: psy2152

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSDRMDSRPPRLPSMGLGHINS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
meldqetvygthddshiVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKlmmgsgssdrmdsrpprlpsmglghins
Flexible Loop (DISEMBL)
meldqetvygthddshivmSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDaleddkkelnSKIESLESIVRMLElksknasdhvyRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLmmgsgssdrmdsrpprlpsmglghins
Low Complexity Region (SEG)
MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRleekeqelkkeYSILHERYTELLKTHMEYIERTKlmmgsgssdrmdsrpprlpsmGLGHINS
Disordered region (IsUnstruct)
****************IVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELEL*****************************************************************************EYSILHERYTELLKTHMEYIER******************************
Disordered Region (DISOPRED)
******************MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLD*****************************************FQIEDALEDDKKEL*****************************************************************************************
Disordered Region (DISEMBL)
*********GTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM**********RPPRLPSMGLGHINS
Disordered Region (DISPRO)
****QETVYG***DSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLFQIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYTELLKTHMEYIERTKLMMGSGSSDRMDSRPPRLPSMGLGHINS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q29EP6	1235	JNK-interacting protein 3	yes	N/A	0.921	0.153	0.630	3e-63
Q9GQF1	1227	JNK-interacting protein 3	yes	N/A	0.921	0.154	0.625	8e-63
O60271	1321	C-Jun-amino-terminal kina	yes	N/A	0.921	0.143	0.591	5e-56
Q58A65	1321	C-Jun-amino-terminal kina	no	N/A	0.897	0.139	0.6	6e-56
Q9ESN9	1337	C-Jun-amino-terminal kina	yes	N/A	0.878	0.134	0.611	6e-56
Q9UPT6	1336	C-Jun-amino-terminal kina	no	N/A	0.878	0.134	0.605	1e-55
P34609	1157	JNK-interacting protein O	yes	N/A	0.941	0.166	0.588	5e-54
O76878	443	RILP-like protein homolog	no	N/A	0.565	0.261	0.294	1e-05

>sp|Q29EP6|JIP3_DROPS JNK-interacting protein 3 OS=Drosophila pseudoobscura pseudoobscura GN=syd PE=3 SV=2

 Score =  241 bits (614), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 159/203 (78%), Gaps = 14/203 (6%)

Query: 6   ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
           ETVYGT +D+++VMSEK       VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct: 19  ETVYGT-EDNNMVMSEKNDQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77

Query: 59  SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118
            LD ++  NQE +VELELLREDNEQLVTQYEREK  RK ++QKL + ED  E + KEL +
Sbjct: 78  CLDASYRINQEQDVELELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQENKELAT 137

Query: 119 KIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178
           ++ES+ESIVRMLELK KN+ +H  RLEE+E +LKKEY+ LHERYTEL K H++Y+ERTK+
Sbjct: 138 RLESVESIVRMLELKHKNSLEHASRLEERETDLKKEYNKLHERYTELFKNHVDYMERTKM 197

Query: 179 MMG------SGSSDRMDSRPPRL 195
           +MG      S +SDRM+    RL
Sbjct: 198 LMGSTHSQMSTASDRMEVSRARL 220

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK-signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins. Syd is required for efficient kinesin-I mediated axonal transport.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9GQF1|JIP3_DROME JNK-interacting protein 3 OS=Drosophila melanogaster GN=syd PE=1 SV=1

 Score =  239 bits (611), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 159/203 (78%), Gaps = 14/203 (6%)

Query: 6   ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
           ETVYGT +D+++VMSEK       VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct: 19  ETVYGT-EDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77

Query: 59  SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118
            LD ++  NQE +VE+ELLREDNEQLVTQYEREK  RK ++QKL + ED  E + KEL +
Sbjct: 78  CLDASYRINQEQDVEVELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQENKELAT 137

Query: 119 KIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL 178
           ++ES+ESIVRMLELK KN+ +H  RLEE+E +LKKEY+ LHERYTEL K H++Y+ERTK+
Sbjct: 138 RLESVESIVRMLELKHKNSLEHASRLEEREADLKKEYNKLHERYTELFKNHVDYMERTKM 197

Query: 179 MMG------SGSSDRMDSRPPRL 195
           +MG      S +S+RMD    RL
Sbjct: 198 LMGSTHSQMSTASERMDVSRARL 220

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK-signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins. Syd is required for efficient kinesin-I mediated axonal transport.

Drosophila melanogaster (taxid: 7227)

>sp|O60271|JIP4_HUMAN C-Jun-amino-terminal kinase-interacting protein 4 OS=Homo sapiens GN=SPAG9 PE=1 SV=4

 Score =  217 bits (552), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 113/191 (59%), Positives = 151/191 (79%), Gaps = 2/191 (1%)

Query: 1   MELDQETVYGTH-DDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
           MEL+   VY      S  VMSE+V  LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct: 1   MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60

Query: 60  LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSK 119
           LD  F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++K  + ED+ E +KK+L ++
Sbjct: 61  LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTR 120

Query: 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
           +ESLES  R LELK+KN +D + RLEE+E ELKKEY+ LH+R+TE++  +ME++ERTKL 
Sbjct: 121 VESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLH 180

Query: 180 MGSGSSDRMDS 190
             SG SD+++S
Sbjct: 181 QLSG-SDQLES 190

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. Isoform 5 may play a role in spermatozoa-egg-interaction.

Homo sapiens (taxid: 9606)

>sp|Q58A65|JIP4_MOUSE C-Jun-amino-terminal kinase-interacting protein 4 OS=Mus musculus GN=Spag9 PE=1 SV=2

 Score =  216 bits (551), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 111/185 (60%), Positives = 146/185 (78%), Gaps = 1/185 (0%)

Query: 1   MELDQETVYGTH-DDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
           MEL+   VY      S  VMSE+V  LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct: 1   MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60

Query: 60  LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSK 119
           LD  F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++K  + ED+ E +KK+L ++
Sbjct: 61  LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTR 120

Query: 120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
           +ESLES  R LELK+KN +D + RLEE+E ELKKEY+ LH+R+TE++  +ME++ERTKL 
Sbjct: 121 VESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTKLH 180

Query: 180 MGSGS 184
             SGS
Sbjct: 181 QLSGS 185

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module.

Mus musculus (taxid: 10090)

>sp|Q9ESN9|JIP3_MOUSE C-Jun-amino-terminal kinase-interacting protein 3 OS=Mus musculus GN=Mapk8ip3 PE=1 SV=1

 Score =  216 bits (551), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 110/180 (61%), Positives = 141/180 (78%)

Query: 15  SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVEL 74
           S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEHEVEL
Sbjct: 21  SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVEL 80

Query: 75  ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134
           ELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   R LELK+
Sbjct: 81  ELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQLELKA 140

Query: 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSDRMDSRPPR 194
           KN +D + RLEE+E E+KKEY+ LH+R+TE+++T++E+IER+K+    GS     S P R
Sbjct: 141 KNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGSGQTESSLPGR 200

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins.

Mus musculus (taxid: 10090)

>sp|Q9UPT6|JIP3_HUMAN C-Jun-amino-terminal kinase-interacting protein 3 OS=Homo sapiens GN=MAPK8IP3 PE=1 SV=3

 Score =  216 bits (549), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 142/180 (78%)

Query: 15  SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVEL 74
           S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEHEVEL
Sbjct: 21  SGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVEL 80

Query: 75  ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS 134
           ELLREDNEQL+TQYEREK LR+ A++K  + EDALE +KKEL  ++E  E   R LELK+
Sbjct: 81  ELLREDNEQLLTQYEREKALRRQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQLELKA 140

Query: 135 KNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSGSSDRMDSRPPR 194
           KN +D + RLEE+E E+KKEY+ LH+R+TE+++T++E+IER+K+    G+S    S P R
Sbjct: 141 KNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSKMQQVGGNSQTESSLPGR 200

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of vesicle transport, through interations with the JNK-signaling components and motor proteins.

Homo sapiens (taxid: 9606)

>sp|P34609|JIP_CAEEL JNK-interacting protein OS=Caenorhabditis elegans GN=unc-16 PE=1 SV=3

 Score =  210 bits (535), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 116/197 (58%), Positives = 143/197 (72%), Gaps = 4/197 (2%)

Query: 6   ETVYGT--HDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLA 63
           E VYG     D H  MS+KVQ++A +IY+E E MI  + ED VK LMPLVVNVLE+LDLA
Sbjct: 22  EIVYGGPGSPDEHRTMSDKVQTMASAIYRELETMIKVHGEDGVKTLMPLVVNVLEALDLA 81

Query: 64  FTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL 123
           + E  E   ELE+L+EDNEQL TQYEREK LRK  +QK  +IED L    KEL+ KIESL
Sbjct: 82  YLERDEQTAELEMLKEDNEQLQTQYEREKALRKQTEQKYIEIEDTLIGQNKELDKKIESL 141

Query: 124 ESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGSG 183
           ESI+RMLELK+KNA+DH  RLEE+E E K E+  LHERY  LL+TH++++ERTK +MGS 
Sbjct: 142 ESIMRMLELKAKNATDHASRLEEREVEQKLEFDRLHERYNTLLRTHVDHMERTKYLMGSE 201

Query: 184 SSDRMDSRPPRLPSMGL 200
             + M + P  LP+M L
Sbjct: 202 KFELMQNMP--LPNMQL 216

The JNK-interacting protein (JIP) group of scaffold proteins selectively mediates JNK signaling by aggregating specific components of the MAPK cascade to form a functional JNK signaling module. May function as a regulator of synaptic vesicle transport, through interations with the JNK-signaling components and motor proteins. Binds specific components of the JNK signaling pathway namely jnk-1, jkk-1 and sek-1. Associates with components of the motor protein, kinesin-1. Pre-assembled unc-16 scaffolding complexes are then transported as a cargo of kinesin, to the required subcellular location.

Caenorhabditis elegans (taxid: 6239)

>sp|O76878|RIPL_DROME RILP-like protein homolog OS=Drosophila melanogaster GN=CG11448 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 6   ETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFT 65
           E V    DD  +V    V  LA  I +E+E+++ ++  D V  LMP ++N LE L+   T
Sbjct: 11  EMVLDAIDDIGVV---DVYDLASDIGKEYERIMDRFGTDAVSGLMPKIINTLELLEALAT 67

Query: 66  ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLE 124
           +N+     ++ LR+   QL ++   + + R+  D++L  IE+    +  EL   + SL+
Sbjct: 68  KNERENATIQELRDKVAQLESEKLEKAEFRRRFDKELELIEEQWRSETNELVDLVSSLQ 126

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
328723028	1225	PREDICTED: JNK-interacting protein 3-lik	0.975	0.163	0.773	1e-83
340714920	1273	PREDICTED: LOW QUALITY PROTEIN: JNK-inte	0.985	0.158	0.736	3e-83
307176985	1284	C-jun-amino-terminal kinase-interacting	0.975	0.155	0.743	1e-82
350402040	1273	PREDICTED: LOW QUALITY PROTEIN: JNK-inte	0.985	0.158	0.732	1e-82
345492675	1217	PREDICTED: JNK-interacting protein 3-lik	0.995	0.167	0.721	2e-82
345492673	1194	PREDICTED: JNK-interacting protein 3-lik	0.995	0.170	0.721	2e-82
307197482	566	JNK-interacting protein 3 [Harpegnathos	0.975	0.353	0.743	2e-82
383854370	1273	PREDICTED: LOW QUALITY PROTEIN: JNK-inte	0.985	0.158	0.717	2e-82
328785630	1218	PREDICTED: JNK-interacting protein 3 [Ap	0.985	0.165	0.727	3e-82
380020058	1213	PREDICTED: LOW QUALITY PROTEIN: JNK-inte	0.975	0.164	0.734	6e-82

>gi|328723028|ref|XP_001950671.2| PREDICTED: JNK-interacting protein 3-like [Acyrthosiphon pisum]

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 157/203 (77%), Positives = 184/203 (90%), Gaps = 3/203 (1%)

Query: 3   LDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
           + QE VYGT DD+H+VMSEKVQSLAGSIYQEFEKMI+KYDE+VVK+LMPLVVNVLE LDL
Sbjct: 1   MAQEVVYGTQDDTHVVMSEKVQSLAGSIYQEFEKMISKYDEEVVKNLMPLVVNVLECLDL 60

Query: 63  AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
           + TENQEHEVE+ELLREDNEQLVTQYEREKQLRK+A+QKL ++ED +ED+KK+  SKIES
Sbjct: 61  SHTENQEHEVEVELLREDNEQLVTQYEREKQLRKSAEQKLLEMEDYIEDEKKDYQSKIES 120

Query: 123 LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGS 182
           LESIVRMLELKSKNASDHVYRLEEKEQ++K+EY+ LHERYTEL+KTHM+ IERTK++MGS
Sbjct: 121 LESIVRMLELKSKNASDHVYRLEEKEQDMKQEYTKLHERYTELIKTHMDNIERTKILMGS 180

Query: 183 GSSDRMDS-RPPRLPSMGLGHIN 204
           G  DRMD+ R  R+P M + H+N
Sbjct: 181 G--DRMDNPRSMRMPFMSMAHMN 201

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714920|ref|XP_003395970.1| PREDICTED: LOW QUALITY PROTEIN: JNK-interacting protein 3-like [Bombus terrestris]

 Score =  313 bits (801), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 154/209 (73%), Positives = 187/209 (89%), Gaps = 7/209 (3%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +E+DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE L
Sbjct: 4   IEMDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+++TENQE EVELELLREDNEQLVTQYEREKQLRKA+DQKL ++ED  ED++KEL SKI
Sbjct: 64  DISYTENQEREVELELLREDNEQLVTQYEREKQLRKASDQKLLELEDVAEDERKELLSKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE ELK+EY+ LHERYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKEAELKREYTRLHERYTELFKTHVDYMERTKMLV 183

Query: 181 GSGSSDRMDSR-----PPRLPSMGLGHIN 204
             GS++R+++      P RLPS+GL H++
Sbjct: 184 --GSTERLENSSSGRGPSRLPSLGLTHMS 210

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176985|gb|EFN66291.1| C-jun-amino-terminal kinase-interacting protein 3 [Camponotus floridanus]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 185/207 (89%), Gaps = 7/207 (3%)

Query: 3   LDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
           +DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE LD+
Sbjct: 1   MDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECLDI 60

Query: 63  AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
           ++TENQE EVELELLREDNEQLVTQYEREKQLRKA+DQKL ++ED  ED++KEL SKI+S
Sbjct: 61  SYTENQEREVELELLREDNEQLVTQYEREKQLRKASDQKLLELEDISEDERKELLSKIDS 120

Query: 123 LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGS 182
           LESIVRMLELK+KN+ DHV RLEEKE ELK+EYS LH+RYTEL KTH++Y+ERTK+++  
Sbjct: 121 LESIVRMLELKTKNSHDHVGRLEEKEAELKREYSRLHDRYTELFKTHVDYMERTKMLV-- 178

Query: 183 GSSDRMDS-----RPPRLPSMGLGHIN 204
           GS++R++S      P RLPS+GL H++
Sbjct: 179 GSTERLESVSTSRAPSRLPSLGLAHMS 205

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402040|ref|XP_003486348.1| PREDICTED: LOW QUALITY PROTEIN: JNK-interacting protein 3-like [Bombus impatiens]

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 186/209 (88%), Gaps = 7/209 (3%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +E+DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE L
Sbjct: 4   IEMDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+++TENQE EVELELLREDNEQLVTQYEREKQLRK +DQKL ++ED  ED++KEL SKI
Sbjct: 64  DISYTENQEREVELELLREDNEQLVTQYEREKQLRKTSDQKLLELEDVAEDERKELLSKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE ELK+EY+ LHERYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKEAELKREYTRLHERYTELFKTHVDYMERTKMLV 183

Query: 181 GSGSSDRMDSR-----PPRLPSMGLGHIN 204
             GS++R+++      P RLPS+GL H++
Sbjct: 184 --GSTERLENSSSGRGPSRLPSLGLTHMS 210

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492675|ref|XP_003426906.1| PREDICTED: JNK-interacting protein 3-like isoform 2 [Nasonia vitripennis]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/208 (72%), Positives = 184/208 (88%), Gaps = 4/208 (1%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +++DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE L
Sbjct: 4   IKMDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFERMIARYDEDVVKELMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+A+T+NQEHEVELELLREDNEQLVTQYEREKQLRK +DQKL ++EDA ED++KEL SKI
Sbjct: 64  DIAYTQNQEHEVELELLREDNEQLVTQYEREKQLRKTSDQKLLELEDAAEDERKELVSKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE ELK+EYS LH+RYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKESELKREYSRLHDRYTELFKTHVDYMERTKMLV 183

Query: 181 GSG----SSDRMDSRPPRLPSMGLGHIN 204
           GS     +S   +  P RLP +G+ H++
Sbjct: 184 GSTERLENSTANNRGPGRLPPLGMAHMS 211

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492673|ref|XP_003426905.1| PREDICTED: JNK-interacting protein 3-like isoform 1 [Nasonia vitripennis]

 Score =  310 bits (795), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/208 (72%), Positives = 184/208 (88%), Gaps = 4/208 (1%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +++DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE L
Sbjct: 4   IKMDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFERMIARYDEDVVKELMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+A+T+NQEHEVELELLREDNEQLVTQYEREKQLRK +DQKL ++EDA ED++KEL SKI
Sbjct: 64  DIAYTQNQEHEVELELLREDNEQLVTQYEREKQLRKTSDQKLLELEDAAEDERKELVSKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE ELK+EYS LH+RYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKESELKREYSRLHDRYTELFKTHVDYMERTKMLV 183

Query: 181 GSG----SSDRMDSRPPRLPSMGLGHIN 204
           GS     +S   +  P RLP +G+ H++
Sbjct: 184 GSTERLENSTANNRGPGRLPPLGMAHMS 211

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197482|gb|EFN78716.1| JNK-interacting protein 3 [Harpegnathos saltator]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 154/207 (74%), Positives = 185/207 (89%), Gaps = 7/207 (3%)

Query: 3   LDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
           +DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE LD+
Sbjct: 1   MDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECLDI 60

Query: 63  AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
           ++TENQE EVELELLREDNEQLVTQYEREKQLRKA+DQKL ++ED  ED++KEL SKI+S
Sbjct: 61  SYTENQEREVELELLREDNEQLVTQYEREKQLRKASDQKLLELEDVSEDERKELLSKIDS 120

Query: 123 LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGS 182
           LESIVRMLELK+KN+ DHV RLEEKE ELK+EYS LH+RYTEL KTH++Y+ERTK+++  
Sbjct: 121 LESIVRMLELKTKNSHDHVGRLEEKEAELKREYSRLHDRYTELFKTHVDYMERTKMLV-- 178

Query: 183 GSSDRMDS-----RPPRLPSMGLGHIN 204
           GS++R++S      P RLPS+GL H++
Sbjct: 179 GSTERLESVSAGRAPSRLPSLGLAHMS 205

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854370|ref|XP_003702694.1| PREDICTED: LOW QUALITY PROTEIN: JNK-interacting protein 3-like [Megachile rotundata]

 Score =  310 bits (794), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/209 (71%), Positives = 187/209 (89%), Gaps = 7/209 (3%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +E+DQETVYGTH+DSH+VMSEKVQS+AGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE L
Sbjct: 4   VEMDQETVYGTHEDSHVVMSEKVQSMAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+++ ENQ+ EVELELLREDNEQLVTQYEREKQLRKA+DQKLF++ED  ED++KEL +KI
Sbjct: 64  DISYIENQDREVELELLREDNEQLVTQYEREKQLRKASDQKLFELEDVAEDERKELLAKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE E+K+EY+ LHERYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKEAEMKREYTRLHERYTELFKTHVDYMERTKMLV 183

Query: 181 GSGSSDRMDSR-----PPRLPSMGLGHIN 204
             GS++R+++      P RLPS+GL H++
Sbjct: 184 --GSTERLENATSGRGPSRLPSLGLAHMS 210

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785630|ref|XP_396524.4| PREDICTED: JNK-interacting protein 3 [Apis mellifera]

 Score =  310 bits (793), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/209 (72%), Positives = 186/209 (88%), Gaps = 7/209 (3%)

Query: 1   MELDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESL 60
           +++DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE L
Sbjct: 4   IQMDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECL 63

Query: 61  DLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI 120
           D+++TENQE EVELELLREDNEQLVTQYEREKQLRK +DQKL ++ED  ED++KEL SKI
Sbjct: 64  DISYTENQEREVELELLREDNEQLVTQYEREKQLRKTSDQKLLELEDVAEDERKELLSKI 123

Query: 121 ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           +SLESIVRMLELK+KN+ DHV RLEEKE ELK+EY+ LHERYTEL KTH++Y+ERTK+++
Sbjct: 124 DSLESIVRMLELKTKNSHDHVVRLEEKEAELKREYTRLHERYTELFKTHVDYMERTKMLV 183

Query: 181 GSGSSDRMDSR-----PPRLPSMGLGHIN 204
             GS++R+++      P RLPS+GL H++
Sbjct: 184 --GSTERLENSTSGRGPSRLPSLGLTHMS 210

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020058|ref|XP_003693915.1| PREDICTED: LOW QUALITY PROTEIN: JNK-interacting protein 3-like [Apis florea]

 Score =  308 bits (790), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/207 (73%), Positives = 184/207 (88%), Gaps = 7/207 (3%)

Query: 3   LDQETVYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDL 62
           +DQETVYGTH+DSH+VMSEKVQSLAGSIYQEFEKMI +YDEDVVKDLMPL+VNVLE LD+
Sbjct: 1   MDQETVYGTHEDSHVVMSEKVQSLAGSIYQEFEKMIARYDEDVVKDLMPLLVNVLECLDI 60

Query: 63  AFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIES 122
           ++TENQE EVELELLREDNEQLVTQYEREKQLRK +DQKL ++ED  ED++KEL SKI+S
Sbjct: 61  SYTENQEREVELELLREDNEQLVTQYEREKQLRKTSDQKLLELEDVAEDERKELLSKIDS 120

Query: 123 LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMGS 182
           LESIVRMLELK+KN+ DHV RLEEKE ELK+EY+ LHERYTEL KTH++Y+ERTK+++  
Sbjct: 121 LESIVRMLELKTKNSHDHVVRLEEKEAELKREYTRLHERYTELFKTHVDYMERTKMLV-- 178

Query: 183 GSSDRMDSR-----PPRLPSMGLGHIN 204
           GS++R+++      P RLPS+GL H++
Sbjct: 179 GSTERLENSTTGRGPSRLPSLGLTHMS 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
UNIPROTKB|Q29EP6	1235	syd "JNK-interacting protein 3	0.834	0.138	0.620	1.4e-50
FB|FBgn0024187	1227	syd "sunday driver" [Drosophil	0.834	0.139	0.614	2.9e-50
UNIPROTKB|O60271	1321	SPAG9 "C-Jun-amino-terminal ki	0.863	0.133	0.550	2.4e-46
MGI|MGI:1918084	1321	Spag9 "sperm associated antige	0.863	0.133	0.550	2.4e-46
UNIPROTKB|F1PK77	1326	SPAG9 "Uncharacterized protein	0.863	0.133	0.544	5.1e-46
UNIPROTKB|F1PY25	1330	MAPK8IP3 "Uncharacterized prot	0.829	0.127	0.576	6.6e-46
UNIPROTKB|E1BN82	1328	MAPK8IP3 "Uncharacterized prot	0.804	0.124	0.592	1.1e-45
UNIPROTKB|F1RG15	1336	MAPK8IP3 "Uncharacterized prot	0.804	0.123	0.592	1.4e-45
MGI|MGI:1353598	1337	Mapk8ip3 "mitogen-activated pr	0.804	0.123	0.592	1.4e-45
UNIPROTKB|D4AD98	1337	Mapk8ip3 "Mitogen-activated pr	0.804	0.123	0.592	1.4e-45

UNIPROTKB|Q29EP6 syd "JNK-interacting protein 3" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 537 (194.1 bits), Expect = 1.4e-50, P = 1.4e-50
 Identities = 111/179 (62%), Positives = 136/179 (75%)

Query:     6 ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
             ETVYGT +D+++VMSEK       VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct:    19 ETVYGT-EDNNMVMSEKNDQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77

Query:    59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118
              LD ++  NQE +VELELLREDNEQLVTQYEREK  RK ++QKL + ED  E + KEL +
Sbjct:    78 CLDASYRINQEQDVELELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQENKELAT 137

Query:   119 KIESLESIVRMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ++ES+ESIVRMLELK KN+ +H  R           Y+ LHERYTEL K H++Y+ERTK
Sbjct:   138 RLESVESIVRMLELKHKNSLEHASRLEERETDLKKEYNKLHERYTELFKNHVDYMERTK 196

GO:0000139 "Golgi membrane" evidence=ISS

GO:0005078 "MAP-kinase scaffold activity" evidence=ISS

GO:0008088 "axon cargo transport" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0019894 "kinesin binding" evidence=ISS

GO:0019901 "protein kinase binding" evidence=ISS

GO:0030140 "trans-Golgi network transport vesicle" evidence=ISS

GO:0046328 "regulation of JNK cascade" evidence=ISS

FB|FBgn0024187 syd "sunday driver" [Drosophila melanogaster (taxid:7227)]

 Score = 534 (193.0 bits), Expect = 2.9e-50, P = 2.9e-50
 Identities = 110/179 (61%), Positives = 136/179 (75%)

Query:     6 ETVYGTHDDSHIVMSEK-------VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLE 58
             ETVYGT +D+++VMSEK       VQ LAGSIYQEFE+MI +YDEDVVK+LMPL+VNVLE
Sbjct:    19 ETVYGT-EDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMINRYDEDVVKNLMPLLVNVLE 77

Query:    59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS 118
              LD ++  NQE +VE+ELLREDNEQLVTQYEREK  RK ++QKL + ED  E + KEL +
Sbjct:    78 CLDASYRINQEQDVEVELLREDNEQLVTQYEREKSARKQSEQKLLEAEDLAEQENKELAT 137

Query:   119 KIESLESIVRMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ++ES+ESIVRMLELK KN+ +H  R           Y+ LHERYTEL K H++Y+ERTK
Sbjct:   138 RLESVESIVRMLELKHKNSLEHASRLEEREADLKKEYNKLHERYTELFKNHVDYMERTK 196

GO:0008088 "axon cargo transport" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0030140 "trans-Golgi network transport vesicle" evidence=IDA

GO:0019894 "kinesin binding" evidence=IPI

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|O60271 SPAG9 "C-Jun-amino-terminal kinase-interacting protein 4" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 2.4e-46, P = 2.4e-46
 Identities = 98/178 (55%), Positives = 132/178 (74%)

Query:     1 MELDQETVYGTHDD-SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
             MEL+   VY      S  VMSE+V  LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct:     1 MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60

Query:    60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSK 119
             LD  F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++K  + ED+ E +KK+L ++
Sbjct:    61 LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTR 120

Query:   120 IESLESIVRMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             +ESLES  R LELK+KN +D + R           Y+ LH+R+TE++  +ME++ERTK
Sbjct:   121 VESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTK 178

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0007283 "spermatogenesis" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0042692 "muscle cell differentiation" evidence=TAS

GO:0051149 "positive regulation of muscle cell differentiation" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1918084 Spag9 "sperm associated antigen 9" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 2.4e-46, P = 2.4e-46
 Identities = 98/178 (55%), Positives = 132/178 (74%)

Query:     1 MELDQETVYGTHDD-SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
             MEL+   VY      S  VMSE+V  LAGSIY+EFE++I +YDE+VVK+LMPLVV VLE+
Sbjct:     1 MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVAVLEN 60

Query:    60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSK 119
             LD  F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++K  + ED+ E +KK+L ++
Sbjct:    61 LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTR 120

Query:   120 IESLESIVRMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             +ESLES  R LELK+KN +D + R           Y+ LH+R+TE++  +ME++ERTK
Sbjct:   121 VESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTK 178

GO:0000187 "activation of MAPK activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0007257 "activation of JUN kinase activity" evidence=IDA

GO:0008432 "JUN kinase binding" evidence=IDA

GO:0019894 "kinesin binding" evidence=IDA

GO:0030335 "positive regulation of cell migration" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=IGI

GO:0045666 "positive regulation of neuron differentiation" evidence=IMP

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0051146 "striated muscle cell differentiation" evidence=IGI

GO:0051260 "protein homooligomerization" evidence=IDA

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IDA

UNIPROTKB|F1PK77 SPAG9 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 495 (179.3 bits), Expect = 5.1e-46, P = 5.1e-46
 Identities = 97/178 (54%), Positives = 132/178 (74%)

Query:     1 MELDQETVYGTHDD-SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLES 59
             MEL+   VY      S  VMSE+V  LAGSIY+EFE++I +YDE+VVK+LMPLVV +LE+
Sbjct:     1 MELEDGVVYQEEPGGSGAVMSERVSGLAGSIYREFERLIGRYDEEVVKELMPLVVALLEN 60

Query:    60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSK 119
             LD  F ++QEH+VELELLR+DNEQL+TQYEREK LRK A++K  + ED+ E +KK+L ++
Sbjct:    61 LDSVFAQDQEHQVELELLRDDNEQLITQYEREKALRKHAEEKFIEFEDSQEQEKKDLQTR 120

Query:   120 IESLESIVRMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             +ESLES  R LELK+KN +D + R           Y+ LH+R+TE++  +ME++ERTK
Sbjct:   121 VESLESQTRQLELKAKNYADQISRLEEREAELKKEYNALHQRHTEMIHNYMEHLERTK 178

GO:0090074 "negative regulation of protein homodimerization activity" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0048273 "mitogen-activated protein kinase p38 binding" evidence=IEA

GO:0045666 "positive regulation of neuron differentiation" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F1PY25 MAPK8IP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 6.6e-46, P = 6.6e-46
 Identities = 98/170 (57%), Positives = 127/170 (74%)

Query:     8 VYGTHDDSHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTEN 67
             +Y  H     VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +EN
Sbjct:    13 IYIGHHLQGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSEN 72

Query:    68 QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127
             QEHEVELELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   
Sbjct:    73 QEHEVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEQYEFQT 132

Query:   128 RMLELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             R LELK+KN +D + R           Y+ LH+R+TE+++T++E+IER+K
Sbjct:   133 RQLELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSK 182

GO:0060425 "lung morphogenesis" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|E1BN82 MAPK8IP3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 492 (178.3 bits), Expect = 1.1e-45, P = 1.1e-45
 Identities = 99/167 (59%), Positives = 127/167 (76%)

Query:    13 DD--SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEH 70
             DD  S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEH
Sbjct:    17 DDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEH 76

Query:    71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130
             EVELELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   R L
Sbjct:    77 EVELELLREDNEQLLTQYEREKSLRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQL 136

Query:   131 ELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ELK+KN +D + R           Y+ LH+R+TE+++T++E+IER+K
Sbjct:   137 ELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSK 183

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0060425 "lung morphogenesis" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

UNIPROTKB|F1RG15 MAPK8IP3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 491 (177.9 bits), Expect = 1.4e-45, P = 1.4e-45
 Identities = 99/167 (59%), Positives = 127/167 (76%)

Query:    13 DD--SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEH 70
             DD  S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEH
Sbjct:    17 DDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEH 76

Query:    71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130
             EVELELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   R L
Sbjct:    77 EVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQVQVEHYEFQTRQL 136

Query:   131 ELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ELK+KN +D + R           Y+ LH+R+TE+++T++E+IER+K
Sbjct:   137 ELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSK 183

GO:0060425 "lung morphogenesis" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1353598 Mapk8ip3 "mitogen-activated protein kinase 8 interacting protein 3" [Mus musculus (taxid:10090)]

 Score = 491 (177.9 bits), Expect = 1.4e-45, P = 1.4e-45
 Identities = 99/167 (59%), Positives = 127/167 (76%)

Query:    13 DD--SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEH 70
             DD  S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEH
Sbjct:    17 DDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEH 76

Query:    71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130
             EVELELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   R L
Sbjct:    77 EVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQL 136

Query:   131 ELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ELK+KN +D + R           Y+ LH+R+TE+++T++E+IER+K
Sbjct:   137 ELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSK 183

GO:0000139 "Golgi membrane" evidence=IDA

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0005078 "MAP-kinase scaffold activity" evidence=IDA;IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005790 "smooth endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007254 "JNK cascade" evidence=IDA

GO:0007257 "activation of JUN kinase activity" evidence=IDA

GO:0007411 "axon guidance" evidence=IMP

GO:0007585 "respiratory gaseous exchange" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0008432 "JUN kinase binding" evidence=IPI

GO:0009791 "post-embryonic development" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0016192 "vesicle-mediated transport" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0019894 "kinesin binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030425 "dendrite" evidence=IDA

GO:0030673 "axolemma" evidence=IDA

GO:0030900 "forebrain development" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=ISO;IPI

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IPI

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=ISO

GO:0043507 "positive regulation of JUN kinase activity" evidence=IDA

GO:0045666 "positive regulation of neuron differentiation" evidence=ISO

GO:0046328 "regulation of JNK cascade" evidence=IDA

GO:0048286 "lung alveolus development" evidence=IMP

GO:0060425 "lung morphogenesis" evidence=IMP

UNIPROTKB|D4AD98 Mapk8ip3 "Mitogen-activated protein kinase 8 interacting protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 491 (177.9 bits), Expect = 1.4e-45, P = 1.4e-45
 Identities = 99/167 (59%), Positives = 127/167 (76%)

Query:    13 DD--SHIVMSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEH 70
             DD  S  VMSE+V  LAGSIY+EFE++I  YDE+VVK+LMPLVVNVLE+LD   +ENQEH
Sbjct:    17 DDYCSGSVMSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEH 76

Query:    71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRML 130
             EVELELLREDNEQL+TQYEREK LRK A++K  + EDALE +KKEL  ++E  E   R L
Sbjct:    77 EVELELLREDNEQLLTQYEREKALRKQAEEKFIEFEDALEQEKKELQIQVEHYEFQTRQL 136

Query:   131 ELKSKNASDHVYRXXXXXXXXXXXYSILHERYTELLKTHMEYIERTK 177
             ELK+KN +D + R           Y+ LH+R+TE+++T++E+IER+K
Sbjct:   137 ELKAKNYADQISRLEERESEMKKEYNALHQRHTEMIQTYVEHIERSK 183

GO:0000139 "Golgi membrane" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0005078 "MAP-kinase scaffold activity" evidence=IEA

GO:0005790 "smooth endoplasmic reticulum" evidence=IEA

GO:0007257 "activation of JUN kinase activity" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008432 "JUN kinase binding" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0030673 "axolemma" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031434 "mitogen-activated protein kinase kinase binding" evidence=IEA

GO:0031435 "mitogen-activated protein kinase kinase kinase binding" evidence=IEA

GO:0048286 "lung alveolus development" evidence=IEA

GO:0060425 "lung morphogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q29EP6	JIP3_DROPS	No assigned EC number	0.6305	0.9219	0.1530	yes	N/A
P34609	JIP_CAEEL	No assigned EC number	0.5888	0.9414	0.1668	yes	N/A
Q9ESN9	JIP3_MOUSE	No assigned EC number	0.6111	0.8780	0.1346	yes	N/A
Q9GQF1	JIP3_DROME	No assigned EC number	0.6256	0.9219	0.1540	yes	N/A
O60271	JIP4_HUMAN	No assigned EC number	0.5916	0.9219	0.1430	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
pfam09744	158	pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated prot	6e-55
TIGR03752	472	TIGR03752, conj_TIGR03752, integrating conjugative	2e-04
COG0443	579	COG0443, DnaK, Molecular chaperone [Posttranslatio	0.002
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.003

>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1

 Score =  171 bits (436), Expect = 6e-55
 Identities = 106/158 (67%), Positives = 126/158 (79%)

Query: 23  VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNE 82
           V  LA SIYQEFE++I  Y E+VVK+LMPLV+ VLE+LD   +ENQE EVELELLREDNE
Sbjct: 1   VYDLANSIYQEFERLIDNYGEEVVKNLMPLVIRVLENLDSLASENQELEVELELLREDNE 60

Query: 83  QLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVY 142
           +L TQYEREK+LRK A+QKL + ED LE +KKEL  KIE LE  VR LELK+KN SD V 
Sbjct: 61  RLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELKAKNLSDQVS 120

Query: 143 RLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM 180
           RLEE+E ELKKEY+ LHERYT+LLK ++EY+ER K  +
Sbjct: 121 RLEERETELKKEYNSLHERYTKLLKNYVEYVERQKDEI 158

This is the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have an RhoGEF pfam00621 domain at their C-terminal end. Length = 158

>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)

Query: 66  ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125
           E +E    L  L  +NE L  + ER ++  ++ DQ   QI+ A++ + +EL  +IE L+S
Sbjct: 67  EVKELRKRLAKLISENEALKAENERLQKREQSIDQ---QIQQAVQSETQELTKEIEQLKS 123

Query: 126 IVRMLE 131
             + L+
Sbjct: 124 ERQQLQ 129

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition [Mobile and extrachromosomal element functions, Plasmid functions]. Length = 472

>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)

Query: 48  DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQ-LRKAADQKLFQIE 106
           + M        +LD  F E  E   E E L    E+ + +  +  +  ++  ++ +  +E
Sbjct: 489 ERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIVKVSEEEKEKIEEAITDLE 548

Query: 107 DALEDDKKELNSKIESLESIVR 128
           +ALE +K+E+ +KIE L+ + +
Sbjct: 549 EALEGEKEEIKAKIEELQEVTQ 570

Length = 579

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 37.5 bits (88), Expect = 0.003
 Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 66  ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLES 125
           E  + E  LE  +E+  +L  ++E+E + R+    +L ++E  L   ++ L+ K+E LE 
Sbjct: 52  EAIKKEALLEA-KEEIHKLRNEFEKELRERR---NELQKLEKRLLQKEENLDRKLELLE- 106

Query: 126 IVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIER 175
                  K +        LE+KE+EL+++   L ++  EL +   E ++ 
Sbjct: 107 -------KREE------ELEKKEKELEQKQQELEKKEEELEELIEEQLQE 143

Length = 520

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	100.0
KOG2077|consensus	832		100.0
PF00038	312	Filament: Intermediate filament protein; InterPro:	95.49
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.48
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	93.3
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.28
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.15
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	92.07
PRK11637	428	AmiB activator; Provisional	91.9
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.56
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	91.54
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.95
KOG1962|consensus	216		90.38
PF08232	134	Striatin: Striatin family; InterPro: IPR013258 Thi	89.51
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	89.5
KOG1103|consensus	561		88.91
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	88.9
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.43
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	88.23
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	88.18
PRK04778	569	septation ring formation regulator EzrA; Provision	87.67
PRK00106	535	hypothetical protein; Provisional	87.39
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.99
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.59
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	86.34
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	86.26
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	85.52
PF02841	297	GBP_C: Guanylate-binding protein, C-terminal domai	85.36
KOG0980|consensus	980		84.69
PRK02224	880	chromosome segregation protein; Provisional	84.33
KOG0161|consensus	1930		84.25
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	83.95
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	83.94
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.81
KOG0999|consensus	772		83.69
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	83.2
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	82.43
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	82.36
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	82.36
KOG4674|consensus	1822		81.81
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	81.67
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	81.55
KOG4673|consensus	961		80.88
PRK10884	206	SH3 domain-containing protein; Provisional	80.86
PF10212	518	TTKRSYEDQ: Predicted coiled-coil domain-containing	80.84
PRK10884	206	SH3 domain-containing protein; Provisional	80.73
PRK00409	782	recombination and DNA strand exchange inhibitor pr	80.57
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	80.48
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	80.04

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=100.00  E-value=3.7e-53  Score=350.01  Aligned_cols=157  Identities=58%  Similarity=0.782  Sum_probs=155.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152          23 VQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKL  102 (205)
Q Consensus        23 Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel  102 (205)
                      ||+||++||+|||+||++||+|+|+||||+||+|||+||+++++|+++++++++|++||++|+++|+++|++|+++++++
T Consensus         1 Vy~lA~~Ig~EfE~lId~~G~e~v~~LmP~VV~vLE~Le~~~~~n~~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l   80 (158)
T PF09744_consen    1 VYDLASSIGKEFERLIDRYGEEAVKGLMPKVVRVLELLESLASRNQEHEVELELLREDNEQLETQYEREKELRKQAEEEL   80 (158)
T ss_pred             ChHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152         103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM  179 (205)
Q Consensus       103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~  179 (205)
                      .++||+|++++++|.++|++|+++||+|+++++|++||++|+++++.+||++|+.+|+|||++|++|++|++|+|..
T Consensus        81 ~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e~ver~k~~  157 (158)
T PF09744_consen   81 LELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKEHVERQKDE  157 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999874

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG2077|consensus

Probab=100.00  E-value=8.8e-49  Score=373.94  Aligned_cols=168  Identities=59%  Similarity=0.810  Sum_probs=166.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy2152          19 MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAA   98 (205)
Q Consensus        19 mse~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~   98 (205)
                      ||++|+.||++||+|||+||..||+++|+.|||+||+|||+||+++++|++|.+||++||+|||||++||||||.+|+++
T Consensus         1 MSerVs~lAgsIYREfErlIh~~~Ee~VKeLMPLVVNVLEnLD~v~~EnqEhevELElLrEDNEQl~tqYErEkalR~q~   80 (832)
T KOG2077|consen    1 MSERVSGLAGSIYREFERLIHCYDEEVVKELMPLVVNVLENLDSVLSENQEHEVELELLREDNEQLITQYEREKALRTQL   80 (832)
T ss_pred             CchhhhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152          99 DQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKL  178 (205)
Q Consensus        99 Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~  178 (205)
                      +++++++||+++++.++|..+++.++...|+|++|+||++||++||+||+.++|.||+.||+|||+|+|||++|++|+|+
T Consensus        81 eqKfie~eD~Le~~~kel~~k~e~~e~~~r~Lelkakn~td~asrleEre~e~k~ef~~LhqR~tem~rthv~h~ersk~  160 (832)
T KOG2077|consen   81 EQKFIEGEDQLESTAKELIRKEEPIELGIRPLELKAKNLTDDASRLEEREGEEKWEFQELHQRHTEMPRTHVSHKERSKV  160 (832)
T ss_pred             HhhhcchHHHHHhhHHHHHhhhcchhheeeeeccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCC
Q psy2152         179 MMGSGSSD  186 (205)
Q Consensus       179 ~~~~~~~~  186 (205)
                      +++++.++
T Consensus       161 ~qgg~k~~  168 (832)
T KOG2077|consen  161 SQGGSKAT  168 (832)
T ss_pred             hhcCcccc
Confidence            99998877

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=95.49  E-value=1.6  Score=38.40  Aligned_cols=140  Identities=17%  Similarity=0.239  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy2152          21 EKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQ  100 (205)
Q Consensus        21 e~Vy~lA~~Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Ee  100 (205)
                      .+...+-..|..+|+.+++.+-.++-.-.=+++-.+-...............++..++.....|-.++..=+......+.
T Consensus       165 ~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~  244 (312)
T PF00038_consen  165 SDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLER  244 (312)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhh
Confidence            34445556678899999999999988888888777666666666666667777777888877776666665666677777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152         101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY---TELLKTHMEYIE  174 (205)
Q Consensus       101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~---~elir~~~e~~e  174 (205)
                      .+..++..+..+.+.++..|..++.+...+...+              ....++|+.|-+.-   -.-|-+|..+++
T Consensus       245 ~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~--------------~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE  307 (312)
T PF00038_consen  245 QLRELEQRLDEEREEYQAEIAELEEELAELREEM--------------ARQLREYQELLDVKLALDAEIATYRKLLE  307 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH--------------HHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            8888888888888888888888877766554333              33444555554422   233666666554

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.48  E-value=2.1  Score=40.63  Aligned_cols=93  Identities=22%  Similarity=0.181  Sum_probs=64.8

Q ss_pred             HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152          56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK  135 (205)
Q Consensus        56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~k  135 (205)
                      -=|.|-..+..-+++..|.+.|+-.|++|+.|+=+-+..           =-.-.++.+.|..-+..+.++|..|++++.
T Consensus        83 ~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v-----------f~k~k~~~q~LE~li~~~~EEn~~lqlqL~  151 (401)
T PF06785_consen   83 KDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV-----------FMKTKGDIQHLEGLIRHLREENQCLQLQLD  151 (401)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----------HHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence            335566667777889999999999999999888764332           122344555666677777777777777777


Q ss_pred             chhhhhhhhHHHHHHHHHHHHHHH
Q psy2152         136 NASDHVYRLEEKEQELKKEYSILH  159 (205)
Q Consensus       136 n~~dq~~rleErE~elkkE~~~Lh  159 (205)
                      .+..+..-.+|+-+.|.+|+..--
T Consensus       152 ~l~~e~~Ekeeesq~LnrELaE~l  175 (401)
T PF06785_consen  152 ALQQECGEKEEESQTLNRELAEAL  175 (401)
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHH
Confidence            777777666777777766665433

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=93.30  E-value=4.1  Score=35.44  Aligned_cols=67  Identities=22%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         101 KLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK  167 (205)
Q Consensus       101 el~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir  167 (205)
                      ....--|.|..++++|...+..|..+...|+...+....++...+.+-.+|+.....+.....++.-
T Consensus        39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p  105 (251)
T PF11932_consen   39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVP  105 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444567777777777777777777777777766666666666666666666655555554444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.28  E-value=5  Score=35.33  Aligned_cols=75  Identities=27%  Similarity=0.431  Sum_probs=59.2

Q ss_pred             HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q psy2152          56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDK---KELNSKIESLESIVRML  130 (205)
Q Consensus        56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~---keL~~~v~~Le~~~r~L  130 (205)
                      +=..++.+...+.....++.-++.+.+.+-.+|+.+...++..+.++..+-...+.++   -+|..++..|+.+..-+
T Consensus        59 lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl  136 (312)
T PF00038_consen   59 LRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFL  136 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Confidence            3356788888899999999999999999999999999999999887776665544443   45777888888765544

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.15  E-value=5.2  Score=32.11  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152         115 ELNSKIESLESIVRMLELKSKNASDHVYRLE  145 (205)
Q Consensus       115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rle  145 (205)
                      .+..+...++..++.+..+.+...|.+.++.
T Consensus        91 ~~~~~~~~l~~~~~~~~~~~k~~kee~~klk  121 (151)
T PF11559_consen   91 SAEEKERQLQKQLKSLEAKLKQEKEELQKLK  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555555554443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=92.07  E-value=12  Score=37.33  Aligned_cols=123  Identities=21%  Similarity=0.293  Sum_probs=74.2

Q ss_pred             HhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHH
Q psy2152          46 VKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-----------------KAADQKLFQIEDA  108 (205)
Q Consensus        46 V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-----------------k~~Eeel~~~ED~  108 (205)
                      +..|.--+..+-..++.+.+.......+++..+..++.|-.+|..-+..-                 ....+++..+..+
T Consensus       337 l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~q  416 (594)
T PF05667_consen  337 LDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVELAQQ  416 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666555433333332221                 2334588889999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT  168 (205)
Q Consensus       109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~  168 (205)
                      |+.=+..|...+..|..........++...+.+..+.++..++..+...-.+.|..|...
T Consensus       417 We~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e  476 (594)
T PF05667_consen  417 WEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE  476 (594)
T ss_pred             HHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999888866554444444444555555555555554444444444444443

>PRK11637 AmiB activator; Provisional

Probab=91.90  E-value=9.7  Score=35.60  Aligned_cols=61  Identities=11%  Similarity=0.103  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH  169 (205)
Q Consensus       109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~  169 (205)
                      ...+.+.+..++..++...+.++..+......+..++.+..++++++..+.+.+...++.+
T Consensus        73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~  133 (428)
T PRK11637         73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAA  133 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777777777777777777777777777777888888777777777777764

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.56  E-value=2.8  Score=33.45  Aligned_cols=56  Identities=21%  Similarity=0.118  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          49 LMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQ  104 (205)
Q Consensus        49 LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~  104 (205)
                      |.-.+.++.+..+.+...-.....++.....--...-..||+|=.+....=+.|-.
T Consensus         8 l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~   63 (132)
T PF07926_consen    8 LQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQ   63 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            33344444444454444444444444444444444455666665544333334433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=91.54  E-value=8  Score=32.97  Aligned_cols=65  Identities=18%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2152         111 DDKKELNSKIESLESIVRMLELKSKNASDH-VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERT  176 (205)
Q Consensus       111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq-~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~  176 (205)
                      .++..+...++.|+.++..|...+..+.+. ..+++....+. ..+..--+|+|+=|-.-..|+-+.
T Consensus       103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~-~~~~~~anrwTDNI~~l~~~~~~k  168 (188)
T PF03962_consen  103 EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEI-KIAKEAANRWTDNIFSLKSYLKKK  168 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHh
Confidence            677778888888888888887777644432 12233222222 233344568888888878887763

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=90.95  E-value=5.2  Score=33.70  Aligned_cols=117  Identities=22%  Similarity=0.290  Sum_probs=31.8

Q ss_pred             hHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          44 DVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESL  123 (205)
Q Consensus        44 d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~L  123 (205)
                      ..+..+=++++..-+.|..++..+......|-.+...++.+-..+....       ..+.    .+..+...|..++..|
T Consensus        67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~-------~~l~----~l~~~~~~L~~~~~~l  135 (194)
T PF08614_consen   67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKE-------RRLA----ELEAELAQLEEKIKDL  135 (194)
T ss_dssp             -----------------------------------------------HH-------HHHH----HHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhHHHHH-------HHHH----HHHHHHHHHHHHHHHH
Confidence            4455666777777788888777776666666555555333211111100       0111    1122223333333333


Q ss_pred             HHHHHHHHhhhcchhh-------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         124 ESIVRMLELKSKNASD-------HVYRLEEKEQELKKEYSILHERYTELLKTHME  171 (205)
Q Consensus       124 e~~~r~Le~k~kn~~d-------q~~rleErE~elkkE~~~Lh~r~~elir~~~e  171 (205)
                      ..+.+..........|       +..-++++-..+++|...|.+|+......-.+
T Consensus       136 ~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe  190 (194)
T PF08614_consen  136 EEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQEAE  190 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333222222222       34557777778888888888777665544433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG1962|consensus

Probab=90.38  E-value=3.6  Score=36.45  Aligned_cols=57  Identities=30%  Similarity=0.498  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152         109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL  165 (205)
Q Consensus       109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el  165 (205)
                      +..+...+.+....|+++.+....+.+....++..+.-|-.++.+||.+|-+.|.++
T Consensus       149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L  205 (216)
T KOG1962|consen  149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL  205 (216)
T ss_pred             hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            444555666667777777777777777777788888888888999999998888765

>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin

Probab=89.51  E-value=2.2  Score=34.64  Aligned_cols=51  Identities=27%  Similarity=0.264  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152         107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE  160 (205)
Q Consensus       107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~  160 (205)
                      -.|+-|+.+|+++|+.||.+.|.++..-+   |.+-|...=|..||.|-...|.
T Consensus        21 ~~WeiERaEmkarIa~LEGE~r~~e~l~~---dL~rrIkMLE~aLkqER~k~~~   71 (134)
T PF08232_consen   21 NQWEIERAEMKARIAFLEGERRGQENLKK---DLKRRIKMLEYALKQERAKYKK   71 (134)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999998876554   4455655556666666655543

Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=89.50  E-value=9.3  Score=30.42  Aligned_cols=106  Identities=21%  Similarity=0.328  Sum_probs=46.1

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Q psy2152          59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNAS  138 (205)
Q Consensus        59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~  138 (205)
                      .+..+-.........+..++.|.+..   -..=+....+++.++..=-+. -.....+...+..++.....|...+....
T Consensus        11 e~~~~~~~~~~~~~~~~~~~~dl~~q---~~~a~~Aq~~YE~El~~Ha~~-~~~L~~lr~e~~~~~~~~~~l~~~~~~a~   86 (132)
T PF07926_consen   11 ELQRLKEQEEDAEEQLQSLREDLESQ---AKIAQEAQQKYERELVKHAED-IKELQQLREELQELQQEINELKAEAESAK   86 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444455555555554322   111111223344333322222 33344444445555555555444443333


Q ss_pred             hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         139 DHV----YRLEEKEQELKKEYSILHERYTELLKT  168 (205)
Q Consensus       139 dq~----~rleErE~elkkE~~~Lh~r~~elir~  168 (205)
                      ..+    ...++++..|.++...+..|+.+|-..
T Consensus        87 ~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~Q  120 (132)
T PF07926_consen   87 AELEESEASWEEQKEQLEKELSELEQRIEDLNEQ  120 (132)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222    234556666666666666655544433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG1103|consensus

Probab=88.91  E-value=24  Score=34.30  Aligned_cols=60  Identities=28%  Similarity=0.211  Sum_probs=47.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152          75 ELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKS  134 (205)
Q Consensus        75 e~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~  134 (205)
                      -.|..+++||-.|+|-|+...|++|..---+|-+++.|++...+-+--|--++++..+|+
T Consensus       142 ~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~mLilEcKka~~Ka  201 (561)
T KOG1103|consen  142 AHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLMLILECKKALLKA  201 (561)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999998888899999888877766666655666554443

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=88.90  E-value=18  Score=33.17  Aligned_cols=133  Identities=14%  Similarity=0.216  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHHHHhhChhH----------HhhHHHHHHHHHHhhHHH----------------hhhhhhhhHHHHHH
Q psy2152          24 QSLAGSIYQEFEKMITKYDEDV----------VKDLMPLVVNVLESLDLA----------------FTENQEHEVELELL   77 (205)
Q Consensus        24 y~lA~~Ig~EfE~lI~~yG~d~----------V~~LmP~VV~vLE~Le~~----------------~~~n~~~~~Ele~L   77 (205)
                      |..=.++..=++.||++||.=+          ...+|--++.|...|.+.                +.+-...++++.=|
T Consensus        92 Y~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLesa~vkV~WL  171 (269)
T PF05278_consen   92 YQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLESAKVKVDWL  171 (269)
T ss_pred             EEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHHHcCcchHHH
Confidence            5566677777899999999533          345666666666666442                22222334444555


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHH
Q psy2152          78 REDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSI  157 (205)
Q Consensus        78 red~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~  157 (205)
                      |...+.++.-    ++..++++ ....--+.++.........++.++++.++.+..++...+++.-.-.|-++|+-+-.+
T Consensus       172 R~~L~Ei~Ea----~e~~~~~~-~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~  246 (269)
T PF05278_consen  172 RSKLEEILEA----KEIYDQHE-TREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTR  246 (269)
T ss_pred             HHHHHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544443211    11111111 111222333444444445555556666666666666655555444454444444444


Q ss_pred             HHHH
Q psy2152         158 LHER  161 (205)
Q Consensus       158 Lh~r  161 (205)
                      ++.+
T Consensus       247 l~k~  250 (269)
T PF05278_consen  247 LSKT  250 (269)
T ss_pred             HHHH
Confidence            4443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.43  E-value=39  Score=36.16  Aligned_cols=75  Identities=19%  Similarity=0.307  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          96 KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDH----VYRLEEKEQELKKEYSILHERYTELLKTHM  170 (205)
Q Consensus        96 k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq----~~rleErE~elkkE~~~Lh~r~~elir~~~  170 (205)
                      .+....+.+.-+.|..++..+...+..++.....++.+-..|.+.    +...-+++.+|+.++..+..+++-|-..|-
T Consensus       298 ~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~  376 (1201)
T PF12128_consen  298 EKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQ  376 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445555555566666666666666666666666666666543    222334444455544444444444444443

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=88.23  E-value=21  Score=33.55  Aligned_cols=56  Identities=21%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         116 LNSKIESLESIVRMLELKSKNASDHVYRLEEK----------EQELKKEYSILHERYTELLKTHME  171 (205)
Q Consensus       116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleEr----------E~elkkE~~~Lh~r~~elir~~~e  171 (205)
                      |...+..++.+...+..+..+..+++..++.+          -..|++++....+.|..++..+.+
T Consensus       315 l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~ee  380 (498)
T TIGR03007       315 LQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRES  380 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555555555555554444333          335555555555555555555433

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>TIGR00606 rad50 rad50

Probab=88.18  E-value=36  Score=36.57  Aligned_cols=130  Identities=15%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH-------H------H
Q psy2152          30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL-------R------K   96 (205)
Q Consensus        30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l-------R------k   96 (205)
                      +..+++..++.-|+..+..+-..+-.+-..++.+.++-.....++..++.+...    ...++..       +      +
T Consensus       956 ~~~~i~~y~~~~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~----~~~~kr~l~dnL~~~~~~~~l~ 1031 (1311)
T TIGR00606       956 YMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDT----QKIQERWLQDNLTLRKRENELK 1031 (1311)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555566666666665555444444455555555555555555554222    2222211       1      2


Q ss_pred             HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2152          97 AADQKLFQIED--------ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTEL  165 (205)
Q Consensus        97 ~~Eeel~~~ED--------~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~el  165 (205)
                      ..+.++..++.        .+..+.+++..++..|......+....+.+.+++..++..-.+  .+|....++|.+.
T Consensus      1032 el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka 1106 (1311)
T TIGR00606      1032 EVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREM 1106 (1311)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHH
Confidence            22334444443        3445556666666666555555555555555555554433322  3555555555543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=87.67  E-value=29  Score=33.93  Aligned_cols=53  Identities=26%  Similarity=0.211  Sum_probs=35.6

Q ss_pred             HHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          53 VVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED  107 (205)
Q Consensus        53 VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED  107 (205)
                      +-.++..|..+-  -......+..+.+..++|.+.+++|...++..++....+.+
T Consensus       265 i~~~~~~l~~l~--l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~  317 (569)
T PRK04778        265 IDENLALLEELD--LDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPD  317 (569)
T ss_pred             HHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            344444444442  33445667889999999999999999998777764444443

>PRK00106 hypothetical protein; Provisional

Probab=87.39  E-value=32  Score=34.12  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152         154 EYSILHERYTELLKTHMEYIERTK  177 (205)
Q Consensus       154 E~~~Lh~r~~elir~~~e~~er~k  177 (205)
                      ++..+...+.+++.....-+++..
T Consensus       140 eLee~~~~~~~~~~~~~~~Le~~a  163 (535)
T PRK00106        140 HIDEREEQVEKLEEQKKAELERVA  163 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            444444455555555555555543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.99  E-value=10  Score=27.98  Aligned_cols=62  Identities=24%  Similarity=0.310  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT  168 (205)
Q Consensus       107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~  168 (205)
                      +.++.-...+...|+.|+.++..|..+-....+.-.-|.+.-..|+.+.+....|...++..
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444555566667777777777766666666777777777788888888888887777653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.59  E-value=16  Score=29.84  Aligned_cols=101  Identities=23%  Similarity=0.390  Sum_probs=48.7

Q ss_pred             hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2152          60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRK---AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKN  136 (205)
Q Consensus        60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk---~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn  136 (205)
                      +.++...+...+.+++.+......+-..++.--....   ....++..+|+.++.--+    ++....+..+....++-.
T Consensus        37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~----~L~e~~ekl~e~d~~ae~  112 (143)
T PF12718_consen   37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEK----KLKETTEKLREADVKAEH  112 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHH
Confidence            3344444444444454444443333322222111111   223344444444433322    233333333444455555


Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152         137 ASDHVYRLEEKEQELKKEYSILHERYTE  164 (205)
Q Consensus       137 ~~dq~~rleErE~elkkE~~~Lh~r~~e  164 (205)
                      +.-++..|+.+-.+|-+.|..|..+|.+
T Consensus       113 ~eRkv~~le~~~~~~E~k~eel~~k~~~  140 (143)
T PF12718_consen  113 FERKVKALEQERDQWEEKYEELEEKYKE  140 (143)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            5555666777777788888877777765

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=86.34  E-value=26  Score=32.05  Aligned_cols=97  Identities=24%  Similarity=0.335  Sum_probs=63.4

Q ss_pred             hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhh
Q psy2152          60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASD  139 (205)
Q Consensus        60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~d  139 (205)
                      ++.-...+.....+-..|++....|+.||+.    |   |+.+..+=..-+-+.+=+.+++++..........++..+.+
T Consensus       123 ~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~----r---E~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~  195 (309)
T PF09728_consen  123 MEEQSERNIKLREENEELREKLKSLIEQYEL----R---EEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKE  195 (309)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHHHHHHHHH----H---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            3344445555666778899999999999993    2   22333333344445555666666666666666667766666


Q ss_pred             -------hhhhhHHHHHHHHHHHHHHHHHHH
Q psy2152         140 -------HVYRLEEKEQELKKEYSILHERYT  163 (205)
Q Consensus       140 -------q~~rleErE~elkkE~~~Lh~r~~  163 (205)
                             ++..+.++|.+|+..++--.++|.
T Consensus       196 ~~l~~~~~~~~~~~~E~~Lr~QL~~Y~~Kf~  226 (309)
T PF09728_consen  196 ILLEEAAQVQTLKETEKELREQLNLYSEKFE  226 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   999999999999986655554443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=86.26  E-value=17  Score=29.75  Aligned_cols=91  Identities=23%  Similarity=0.283  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhh-hHHHHH
Q psy2152          71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYR-LEEKEQ  149 (205)
Q Consensus        71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~r-leErE~  149 (205)
                      ..++..+..+..+|-.++..-+..-+..+.++-.+.-..-  ..+|...|.+|+.++..|+.++..+...... ..+...
T Consensus        71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~  148 (169)
T PF07106_consen   71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKE  148 (169)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence            4467777777777766666666666666666655544332  2346667777777777776666554432111 234444


Q ss_pred             HHHHHHHHHHHHHH
Q psy2152         150 ELKKEYSILHERYT  163 (205)
Q Consensus       150 elkkE~~~Lh~r~~  163 (205)
                      .+.++|...+..+.
T Consensus       149 ~~~~~~~~~~k~w~  162 (169)
T PF07106_consen  149 KLEKEYKKWRKEWK  162 (169)
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555554443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=85.52  E-value=7.5  Score=38.11  Aligned_cols=65  Identities=32%  Similarity=0.384  Sum_probs=33.0

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESI  126 (205)
Q Consensus        59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~  126 (205)
                      .|-.++.+..+...++..|..+|+.|..+-++   +|++...-=.++......+++++..+.++|+.+
T Consensus        60 TlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~---L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~  124 (472)
T TIGR03752        60 TLRTLVAEVKELRKRLAKLISENEALKAENER---LQKREQSIDQQIQQAVQSETQELTKEIEQLKSE  124 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            45555666666666666676666666554443   233322222334444444444444444444443

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma

Probab=85.36  E-value=27  Score=31.22  Aligned_cols=97  Identities=20%  Similarity=0.300  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy2152          30 IYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQL----RKAADQKLFQI  105 (205)
Q Consensus        30 Ig~EfE~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~l----Rk~~Eeel~~~  105 (205)
                      +-++|.++...|-..+-     +-|.+-+.|..+..........+  |..|.  -++..+++...    ...++.+...+
T Consensus       153 ~~~~~~~~~~~Y~~~p~-----Kg~ka~evL~~fl~~~~~~~~~i--lq~d~--~L~~~ek~~~~~~~k~e~~e~e~~~l  223 (297)
T PF02841_consen  153 FLKELDELEKEYEQEPG-----KGVKAEEVLQEFLQSKESMENSI--LQADQ--QLTEKEKEIEEEQAKAEAAEKEKEKL  223 (297)
T ss_dssp             HHHHHHHHHHHHHHSS--------TTHHHHHHHHHHHCHHHHHHH--HHH-T--TS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCC-----CCccHHHHHHHHHHHHHHHHHHH--HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44677788888855522     34445555555544433222222  22221  13444444332    23444556666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2152         106 EDALEDDKKELNSKIESLESIVRMLELKSK  135 (205)
Q Consensus       106 ED~~~~E~keL~~~v~~Le~~~r~Le~k~k  135 (205)
                      ++......+.+..+..++++..++|..+..
T Consensus       224 ~e~~~~~~~~le~~~~~~ee~~~~L~ekme  253 (297)
T PF02841_consen  224 EEKQKEQEQMLEQQERSYEEHIKQLKEKME  253 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666677777777777666665543

GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.

>KOG0980|consensus

Probab=84.69  E-value=33  Score=36.41  Aligned_cols=115  Identities=23%  Similarity=0.357  Sum_probs=60.7

Q ss_pred             hhhhhHHHHHHHHhhHHHHHHHHHHHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-hhhcchh
Q psy2152          67 NQEHEVELELLREDNEQLVTQYEREKQL-R---KAADQKLFQIEDALEDDKKELNSKIESLE---SIVRMLE-LKSKNAS  138 (205)
Q Consensus        67 n~~~~~Ele~Lred~e~Lv~q~ErEK~l-R---k~~Eeel~~~ED~~~~E~keL~~~v~~Le---~~~r~Le-~k~kn~~  138 (205)
                      .+....-++.+..+.+++-.++++.+.. |   -+++..+..+|-.+.+-.+..+...+..|   .+.-+|. .+.....
T Consensus       328 kd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~ek  407 (980)
T KOG0980|consen  328 KDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEK  407 (980)
T ss_pred             CChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566677777777777777766655 2   44555666666555555554444433333   2222211 0111111


Q ss_pred             hh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q psy2152         139 DH--VYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMMG  181 (205)
Q Consensus       139 dq--~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~~  181 (205)
                      .+  +.-.+.+-..++..|+++...|+++...|.+++++.+-.+.
T Consensus       408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~k  452 (980)
T KOG0980|consen  408 AQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQK  452 (980)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12  33344444555666666666777776667666666654433

>PRK02224 chromosome segregation protein; Provisional

Probab=84.33  E-value=49  Score=33.39  Aligned_cols=14  Identities=21%  Similarity=0.207  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHHH
Q psy2152         151 LKKEYSILHERYTE  164 (205)
Q Consensus       151 lkkE~~~Lh~r~~e  164 (205)
                      ++.++..+..+..+
T Consensus       625 ~~~~l~~~r~~i~~  638 (880)
T PRK02224        625 RRERLAEKRERKRE  638 (880)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33334444444333

>KOG0161|consensus

Probab=84.25  E-value=48  Score=37.87  Aligned_cols=65  Identities=31%  Similarity=0.308  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152         115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM  179 (205)
Q Consensus       115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~  179 (205)
                      ++...+..++.+...++.+++++.+.+..++++.+.|.|+-..|.+++.++.-.....=++.+.+
T Consensus       947 ~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l 1011 (1930)
T KOG0161|consen  947 ELELTLQKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSL 1011 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445556666777778888888888888888888888887777777777766665555555443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=83.95  E-value=27  Score=34.74  Aligned_cols=102  Identities=17%  Similarity=0.283  Sum_probs=62.2

Q ss_pred             HHHHHhhChhHHhhHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          35 EKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKK  114 (205)
Q Consensus        35 E~lI~~yG~d~V~~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~k  114 (205)
                      |.+|..|...-+..|+-..              +.......-...+++.|..+++...+.|+.-.           .+.+
T Consensus       411 E~LIk~~Y~~RI~eLt~ql--------------Q~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~-----------eeL~  465 (518)
T PF10212_consen  411 EQLIKSYYMSRIEELTSQL--------------QHADSKAVHFYAECRALQKRLESAEKEKESLE-----------EELK  465 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence            4567777666555554322              22222333344555555555555444333322           2334


Q ss_pred             HHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152         115 ELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE  164 (205)
Q Consensus       115 eL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e  164 (205)
                      .+..++..||.+   |++.-+||.+|++-+.|.-+.|...+....+.+..
T Consensus       466 ~a~~~i~~LqDE---L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~  512 (518)
T PF10212_consen  466 EANQNISRLQDE---LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQT  512 (518)
T ss_pred             HHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666666655   67778999999999999999988888887776554

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=83.94  E-value=54  Score=33.55  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH
Q psy2152         116 LNSKIESLESIVRMLELKSKNASDHVYRLEEKE  148 (205)
Q Consensus       116 L~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE  148 (205)
                      +..+..+|+.+.++|..-+|.-.|++..++..-
T Consensus       543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~  575 (697)
T PF09726_consen  543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555677777777777776666666665555433

; GO: 0016021 integral to membrane

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.81  E-value=27  Score=31.95  Aligned_cols=137  Identities=24%  Similarity=0.322  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHHHHh-------hChhHHhhHHHHHHHHHHhhHHHhhhhh----hhhHHHHHHHHhhHHHHHHHHHHH
Q psy2152          24 QSLAGSIYQEFEKMITK-------YDEDVVKDLMPLVVNVLESLDLAFTENQ----EHEVELELLREDNEQLVTQYEREK   92 (205)
Q Consensus        24 y~lA~~Ig~EfE~lI~~-------yG~d~V~~LmP~VV~vLE~Le~~~~~n~----~~~~Ele~Lred~e~Lv~q~ErEK   92 (205)
                      -.||..+..|+..|++.       ||.|+ .-+=|-+|+  +.|.++..+.-    ..-.++..++++.+.+-..++-.-
T Consensus        72 ReLA~kf~eeLrg~VGhiERmK~PiGHDv-EhiD~elvr--kEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~  148 (290)
T COG4026          72 RELAEKFFEELRGMVGHIERMKIPIGHDV-EHIDVELVR--KELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ  148 (290)
T ss_pred             HHHHHHHHHHHHHhhhhhheeccCCCCCc-cccCHHHHH--HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHH
Confidence            46777777777666654       67774 233333333  33444433211    011122344444444322222111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy2152          93 QLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL-HERYTELLK  167 (205)
Q Consensus        93 ~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L-h~r~~elir  167 (205)
                      ......-+++.+    .+.+..+++..+.+|+-+|.+|+-+.+-..+.+.+|.-|=.+|-.++..+ |.+++++.+
T Consensus       149 ~EkeeL~~elee----le~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~i~dl~~  220 (290)
T COG4026         149 KEKEELLKELEE----LEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVK  220 (290)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence            111111112222    33455567777777777777777777777777766666666665553322 345555554

>KOG0999|consensus

Probab=83.69  E-value=45  Score=34.11  Aligned_cols=154  Identities=19%  Similarity=0.251  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHhhChhHHhhH--HHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHH---HHHHHHH------------
Q psy2152          29 SIYQEFEKMITKYDEDVVKDL--MPLVVNVLESLDLAFTENQEHEVELELLREDNEQL---VTQYERE------------   91 (205)
Q Consensus        29 ~Ig~EfE~lI~~yG~d~V~~L--mP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~L---v~q~ErE------------   91 (205)
                      .+..|+++|...|..-.-...  ---=..|||.=..+-.+..+.+.+.+..|-+.+++   ++||..-            
T Consensus        12 ~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~E   91 (772)
T KOG0999|consen   12 KLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEERE   91 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence            345666777665543211110  00112466666667777777777777777776554   2333221            


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          92 KQLR---KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKT  168 (205)
Q Consensus        92 K~lR---k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~  168 (205)
                      -.+=   ..-|..+.+-=-.++.|.|.+...++..++++..+..+.....+--..+|-+..-|+.|+....-|-+-||..
T Consensus        92 esLLqESaakE~~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rllse  171 (772)
T KOG0999|consen   92 ESLLQESAAKEEYYLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSE  171 (772)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1110   0000111111111233444455555555566666665555555555667778888999999999999999999


Q ss_pred             HHHHHHHhhhhccC
Q psy2152         169 HMEYIERTKLMMGS  182 (205)
Q Consensus       169 ~~e~~er~k~~~~~  182 (205)
                      |-++=|.|-+++.+
T Consensus       172 YSELEEENIsLQKq  185 (772)
T KOG0999|consen  172 YSELEEENISLQKQ  185 (772)
T ss_pred             HHHHHHhcchHHHH
Confidence            99988888777654

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=83.20  E-value=53  Score=32.91  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2152         109 LEDDKKELNSKIESLESIVRMLELKS  134 (205)
Q Consensus       109 ~~~E~keL~~~v~~Le~~~r~Le~k~  134 (205)
                      +..+..++..+|.+|++++..+..+.
T Consensus       211 L~~q~~e~~~ri~~LEedi~~l~qk~  236 (546)
T PF07888_consen  211 LKEQLAEARQRIRELEEDIKTLTQKE  236 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555554444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=82.43  E-value=40  Score=30.91  Aligned_cols=137  Identities=21%  Similarity=0.361  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhhC--hhHHhhHHHHHHHHHHhhHHHhhh-hhhhhHHHHHHHHhhH-------HHHHHHHHHHHHHHH
Q psy2152          28 GSIYQEFEKMITKYD--EDVVKDLMPLVVNVLESLDLAFTE-NQEHEVELELLREDNE-------QLVTQYEREKQLRKA   97 (205)
Q Consensus        28 ~~Ig~EfE~lI~~yG--~d~V~~LmP~VV~vLE~Le~~~~~-n~~~~~Ele~Lred~e-------~Lv~q~ErEK~lRk~   97 (205)
                      ..+..-|..+|++|.  +..+..+|-..=--+.++++=+.+ +.....+.+..+..++       ++-+-.+.|+.+|.+
T Consensus       138 ~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~~~~~~~e~~k~~~~~~~~l~~~~~~~~~~~~E~~Lr~Q  217 (309)
T PF09728_consen  138 EELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQQEEAEQEKEKAKQEKEILLEEAAQVQTLKETEKELREQ  217 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888899887  334444443332222333332222 2223334444455555       666667788888844


Q ss_pred             HH---HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152          98 AD---QKLFQIEDA----------LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE  164 (205)
Q Consensus        98 ~E---eel~~~ED~----------~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~e  164 (205)
                      ..   .++.++.|.          |+.|...+-.++.+|+.++..+..|+-+....+..+-+.-..+.+++..+......
T Consensus       218 L~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~k  297 (309)
T PF09728_consen  218 LNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEK  297 (309)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33   466666654          88999999999999999999999999877777766666666677777776654443

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=82.36  E-value=59  Score=32.88  Aligned_cols=8  Identities=13%  Similarity=-0.068  Sum_probs=3.2

Q ss_pred             HHHhhHHH
Q psy2152          56 VLESLDLA   63 (205)
Q Consensus        56 vLE~Le~~   63 (205)
                      .++.++.+
T Consensus       157 ~~~~~~~~  164 (1179)
T TIGR02168       157 RRAIFEEA  164 (1179)
T ss_pred             HHHHHHHH
Confidence            33444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.36  E-value=33  Score=29.87  Aligned_cols=50  Identities=22%  Similarity=0.313  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHH
Q psy2152         109 LEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSIL  158 (205)
Q Consensus       109 ~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~L  158 (205)
                      ...+.+.|..+++.|+..|++++..+.+....+.+|+.+..++..-...|
T Consensus        54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l  103 (251)
T PF11932_consen   54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL  103 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566667777777777777777777777777777777666665533333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>KOG4674|consensus

Probab=81.81  E-value=67  Score=36.56  Aligned_cols=84  Identities=23%  Similarity=0.269  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIE  174 (205)
Q Consensus        95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~e  174 (205)
                      |.+.+.++..+++.|..-++.++.++..+.+-+..+...++++..++.-+.-.-..+...+..+...+..+-..--++-.
T Consensus       800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k  879 (1822)
T KOG4674|consen  800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK  879 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999999999999999999999988888888888777777777777777777666666544444444


Q ss_pred             Hhhh
Q psy2152         175 RTKL  178 (205)
Q Consensus       175 r~k~  178 (205)
                      +.++
T Consensus       880 ~l~~  883 (1822)
T KOG4674|consen  880 RLKS  883 (1822)
T ss_pred             HHHH
Confidence            4333

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.67  E-value=19  Score=33.02  Aligned_cols=50  Identities=26%  Similarity=0.398  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHH
Q psy2152         111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHE  160 (205)
Q Consensus       111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~  160 (205)
                      .|.+++...+..|+.+...+.........+...+.+.|.+.-++++.++-
T Consensus        57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~  106 (314)
T PF04111_consen   57 QEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQL  106 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444445555544444444444444455555555555555555543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=81.55  E-value=35  Score=34.85  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=14.0

Q ss_pred             hhhhHHHHHHHHhhHHHHHHHH
Q psy2152          68 QEHEVELELLREDNEQLVTQYE   89 (205)
Q Consensus        68 ~~~~~Ele~Lred~e~Lv~q~E   89 (205)
                      .....+|..||.+||+|-..|-
T Consensus       456 r~lk~eL~qlr~ene~Lq~Kl~  477 (697)
T PF09726_consen  456 RSLKSELSQLRQENEQLQNKLQ  477 (697)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777655443

; GO: 0016021 integral to membrane

>KOG4673|consensus

Probab=80.88  E-value=36  Score=35.52  Aligned_cols=77  Identities=25%  Similarity=0.241  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152         103 FQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKE---QELKKEYSILHERYTELLKTHMEYIERTKLM  179 (205)
Q Consensus       103 ~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE---~elkkE~~~Lh~r~~elir~~~e~~er~k~~  179 (205)
                      +.+=-+-++|.-.|+..|..|+..---|.--+.+...+...|.++-   --|+++|..|.+||+-+++-|=+-.|+.-.+
T Consensus       858 eall~QreGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~Ee~EEL  937 (961)
T KOG4673|consen  858 EALLRQREGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDEELEEL  937 (961)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            3333445667777888888888876677666666666666666544   4578899999999999999997666665443

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.86  E-value=26  Score=30.45  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         101 KLFQIEDALEDDKKELNSKIESLESI  126 (205)
Q Consensus       101 el~~~ED~~~~E~keL~~~v~~Le~~  126 (205)
                      ++..+..+|.+.+.+++.++++....
T Consensus       108 ~l~~~~~~~~~~~~~l~~~~~~~~~~  133 (206)
T PRK10884        108 KLNNIDNTWNQRTAEMQQKVAQSDSV  133 (206)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34444455666665665555554443

>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif

Probab=80.84  E-value=40  Score=33.59  Aligned_cols=33  Identities=30%  Similarity=0.396  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhh
Q psy2152         112 DKKELNSKIESLESIVRMLELKSKNASDHVYRL  144 (205)
Q Consensus       112 E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rl  144 (205)
                      |++.|..+++..+.+...+...++.....+.+|
T Consensus       442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~L  474 (518)
T PF10212_consen  442 ECRALQKRLESAEKEKESLEEELKEANQNISRL  474 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443333433333333333333

It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=80.73  E-value=30  Score=30.14  Aligned_cols=11  Identities=27%  Similarity=0.302  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHH
Q psy2152         120 IESLESIVRML  130 (205)
Q Consensus       120 v~~Le~~~r~L  130 (205)
                      +..|+++|.+|
T Consensus       134 ~~~L~~~n~~L  144 (206)
T PRK10884        134 INGLKEENQKL  144 (206)
T ss_pred             HHHHHHHHHHH
Confidence            33344444444

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=80.57  E-value=61  Score=33.34  Aligned_cols=38  Identities=26%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             HHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHH
Q psy2152          56 VLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQ   93 (205)
Q Consensus        56 vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~   93 (205)
                      +++.|+..-...+....+++.++.+.+.+..+|+.++.
T Consensus       521 li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~  558 (782)
T PRK00409        521 LIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKE  558 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555566666665555555555543

>TIGR01069 mutS2 MutS2 family protein

Probab=80.48  E-value=66  Score=33.11  Aligned_cols=38  Identities=26%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             HHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHH
Q psy2152          55 NVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREK   92 (205)
Q Consensus        55 ~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK   92 (205)
                      .+|+.|+..-.+.+....+++.++.+.+.+..+|+.+.
T Consensus       515 ~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~  552 (771)
T TIGR01069       515 VLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEM  552 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555566666666555555555544

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=80.04  E-value=35  Score=31.22  Aligned_cols=69  Identities=17%  Similarity=0.320  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2152         111 DDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM  180 (205)
Q Consensus       111 ~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~  180 (205)
                      .+..++...+..|+.+...+...-..+-.....+.-+-.++..+..++..+|. ....+++.+.++..+.
T Consensus        71 ~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~-~~~~~L~~L~ktNv~n  139 (314)
T PF04111_consen   71 KEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYE-YASNQLDRLRKTNVYN  139 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCHHT--TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCchh
Confidence            34445555555555555555444444444445555555555566666655543 3456677777776543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	7e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	9e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 5/152 (3%)

Query: 19   MSEKVQSLAGSIYQEFEKMITKYDEDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLR 78
            M +++  L   + +E E    K   +        +  + + + +   +N +   E +LL 
Sbjct: 953  MQQQMLDLEEQL-EEEEAARQKLQLEK-VTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010

Query: 79   EDNEQLVTQYEREKQLRK---AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSK 135
            E    L T    E++  K       K   +   LE   K+     + LE I R LE +S 
Sbjct: 1011 ERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070

Query: 136  NASDHVYRLEEKEQELKKEYSILHERYTELLK 167
            +  + +  L+ +  ELK + +   E     L 
Sbjct: 1071 DLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 3/115 (2%)

Query: 66   ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL---EDDKKELNSKIES 122
            E    + +++ + +D   +  Q  +  + RK  ++++  +   L   E+  K L      
Sbjct: 977  EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036

Query: 123  LESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTK 177
             ES++  LE++ K        LE+ +++L+ E S LHE+  EL     E   +  
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 7e-05
 Identities = 27/112 (24%), Positives = 51/112 (45%)

Query: 68   QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV 127
               + ELE +  + E  + + E   Q  +A  +K+ Q    LE+  +E  +  + L+   
Sbjct: 919  AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 128  RMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM 179
               + K K   D +  +E++  +L KE  +L ER ++L     E  E+ K +
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 19/106 (17%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 68   QEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDA------LEDDKKELNSKIE 121
            ++ + E EL  E  E  V    ++++L +   +   +IE+       L+ +KK++  ++ 
Sbjct: 899  EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQML 958

Query: 122  SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLK 167
             LE  +   E   +         + K ++++ +  I+ ++  +L K
Sbjct: 959  DLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTK 1004

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 26/138 (18%), Positives = 58/138 (42%), Gaps = 4/138 (2%)

Query: 43   EDVVKDLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKL 102
            E+++ ++   +    E       E ++ + ++  L E  E+     ++ +  +  AD K+
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 103  FQIED---ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH 159
             ++ED    +ED   +L  + + LE  V  L        +    L + + + +   S L 
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 160  ERYTELLKTHMEYIERTK 177
             R  +  K+  E +E+ K
Sbjct: 1046 VRLKKEEKSRQE-LEKIK 1062

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 24/134 (17%), Positives = 53/134 (39%), Gaps = 8/134 (5%)

Query: 66   ENQEHEVE--LELLREDNEQLVTQYEREKQLRKAADQKLFQIEDAL---EDDKKELNSKI 120
            EN+  +++  ++   ++ + L+ +    +       +KL    + L   E++ K   +++
Sbjct: 927  ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986

Query: 121  ESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTE---LLKTHMEYIERTK 177
             SL+  +  L  +          +EE   + K E   L     E   LLKT  E + R  
Sbjct: 987  LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRI 1046

Query: 178  LMMGSGSSDRMDSR 191
                   ++ M+ +
Sbjct: 1047 HDQAKEITETMEKK 1060

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.96
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	93.54
3qh9_A	81	Liprin-beta-2; coiled-coil, dimerization, structur	93.01
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	92.15
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	91.41
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.64
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.17
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.13
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	89.52
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	88.74
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.59
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	88.26
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	88.19
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	86.63
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	84.25
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	83.71
3cl3_D	130	NF-kappa-B essential modulator; death effector dom	83.22
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	83.18
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	82.3
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	81.67
3bas_A	89	Myosin heavy chain, striated muscle/general contro	81.04
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	80.42

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=94.96  E-value=0.72  Score=47.02  Aligned_cols=80  Identities=13%  Similarity=0.138  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          48 DLMPLVVNVLESLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIV  127 (205)
Q Consensus        48 ~LmP~VV~vLE~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~  127 (205)
                      .-++.+-.-++.|+....++.....++..|.++.+.|-.+|+.-....+..++++.++.+       +|+.+|..|+.++
T Consensus       960 ~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~-------~L~~kv~~L~~e~ 1032 (1080)
T 2dfs_A          960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH-------ETEQLVSELKEQN 1032 (1080)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            334444444666777666666666677777777666655555555444555555444443       5555566666655


Q ss_pred             HHHHhhh
Q psy2152         128 RMLELKS  134 (205)
Q Consensus       128 r~Le~k~  134 (205)
                      ..|+...
T Consensus      1033 ~~L~qq~ 1039 (1080)
T 2dfs_A         1033 TLLKTEK 1039 (1080)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555433

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=93.54  E-value=2.7  Score=34.74  Aligned_cols=95  Identities=18%  Similarity=0.221  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhH
Q psy2152          69 EHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIED---ALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLE  145 (205)
Q Consensus        69 ~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED---~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rle  145 (205)
                      .....-..|..++-.|-++++.||..|.+..+.+-.++-   .+..|.+.+.........++++|.-+       ++-+|
T Consensus        59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek-------l~~lE  131 (168)
T 3o0z_A           59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM-------LNHSE  131 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
Confidence            334444567777778888888888888877754443322   22333333333344444444443333       33344


Q ss_pred             HHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2152         146 EKEQ----ELKKEYSILHERYTELLKTHM  170 (205)
Q Consensus       146 ErE~----elkkE~~~Lh~r~~elir~~~  170 (205)
                      -..+    +|.-++..|.+||.-.++.|-
T Consensus       132 Ke~a~~eid~~~eLKalQ~~~eqE~~~H~  160 (168)
T 3o0z_A          132 KEKNNLEIDLNYKLKSLQQRLEQEVNEHK  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333    334678899999998888874

>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}

Probab=93.01  E-value=0.55  Score=34.84  Aligned_cols=64  Identities=27%  Similarity=0.291  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHH
Q psy2152          97 AADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHER  161 (205)
Q Consensus        97 ~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r  161 (205)
                      .++.++--.| .|-+|.++|.-+|+.++.+--+.+.|+|+..+.+..|..+-..=-.|+.+||..
T Consensus        13 ~~ee~~~~~E-~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~   76 (81)
T 3qh9_A           13 EQEEKQRKAE-ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ   76 (81)
T ss_dssp             -CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3444555555 488999999999999999999999999999999877665555555566666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=92.15  E-value=3  Score=37.36  Aligned_cols=59  Identities=15%  Similarity=0.023  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy2152         122 SLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLMM  180 (205)
Q Consensus       122 ~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~~  180 (205)
                      ++|.+......-.+.....+..+.++.+.++++...+-....+...+|.|.+.+...+.
T Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  483 (487)
T 3oja_A          425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA  483 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence            33333333333344556677888899999999999999999999999999999877654

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=91.41  E-value=4.4  Score=32.97  Aligned_cols=53  Identities=19%  Similarity=0.260  Sum_probs=36.7

Q ss_pred             hhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          66 ENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNS  118 (205)
Q Consensus        66 ~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~  118 (205)
                      +......++.....+..+|...|..|+..|..+|.....++...+.=+-.|..
T Consensus        45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFe   97 (154)
T 2ocy_A           45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD   97 (154)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334455667788888899999999999988887666666655544444443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.64  E-value=6.4  Score=32.53  Aligned_cols=64  Identities=20%  Similarity=0.329  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152          96 KAADQKLFQIEDALEDDK----------KELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH  159 (205)
Q Consensus        96 k~~Eeel~~~ED~~~~E~----------keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh  159 (205)
                      ...++++..+--+|.+|+          .+|+.+|..|+.+++++..+.......-..|.++-..|-|+.+++-
T Consensus        65 ~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e  138 (168)
T 3o0z_A           65 SQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE  138 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            556666777777777766          4555555555555555544444444444445555555555555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.17  E-value=10  Score=34.37  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy2152         107 DALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYIERTKLM  179 (205)
Q Consensus       107 D~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~er~k~~  179 (205)
                      +...++.+.+..+.+.++.++..+.........+...++.+..++.+.+..-.++..++-+.......+.|.+
T Consensus       505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l  577 (597)
T 3oja_B          505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL  577 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555444333334443333333444444433334333333333333333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.13  E-value=1.1  Score=45.65  Aligned_cols=67  Identities=16%  Similarity=0.227  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152          96 KAADQKLFQIEDALEDDKKELNSKIESL---ESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY  162 (205)
Q Consensus        96 k~~Eeel~~~ED~~~~E~keL~~~v~~L---e~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~  162 (205)
                      +...+++..++..+..|+..|+..++.|   +.++..+..+.++..+.+..+++.-..+.+|+..+.+++
T Consensus       945 ~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~ 1014 (1080)
T 2dfs_A          945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA 1014 (1080)
T ss_dssp             ------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444445555666666664433333   333344444444444444444444444444444444444

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=89.52  E-value=5.9  Score=30.48  Aligned_cols=90  Identities=17%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152          71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE  150 (205)
Q Consensus        71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e  150 (205)
                      ..++-.++...+.|-.+++.-|..+...+..+..+|+.+..+.++++.+|..|+.+..++....              +.
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em--------------~~  102 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEM--------------EQ  102 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HH
Confidence            4566677777666666666666667777888888999999999999998888888766543322              23


Q ss_pred             HHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152         151 LKKEYSILHERY---TELLKTHMEYIE  174 (205)
Q Consensus       151 lkkE~~~Lh~r~---~elir~~~e~~e  174 (205)
                      ..+||+.|-+-=   --.|-||.-++|
T Consensus       103 ql~EYq~Ll~vKl~Ld~EIatYRkLLE  129 (131)
T 3tnu_A          103 QNQEYKILLDVKTRLEQEIATYRRLLE  129 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence            346777666643   334677766654

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=88.74  E-value=6.8  Score=30.12  Aligned_cols=43  Identities=23%  Similarity=0.179  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy2152         120 IESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERY  162 (205)
Q Consensus       120 v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~  162 (205)
                      ...|......|+.+++...+.+...+++-++|..+...|.+..
T Consensus        71 ~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~  113 (129)
T 2fxo_A           71 CDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDEC  113 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444444444444444444333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.59  E-value=14  Score=33.53  Aligned_cols=35  Identities=14%  Similarity=0.071  Sum_probs=14.6

Q ss_pred             HHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHH
Q psy2152         125 SIVRMLELKSKNASDHVYRLEEKEQELKKEYSILH  159 (205)
Q Consensus       125 ~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh  159 (205)
                      .++..++.+.....+++..+.+.-..++.+++.|.
T Consensus       544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444443

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=88.19  E-value=7.3  Score=29.83  Aligned_cols=91  Identities=16%  Similarity=0.160  Sum_probs=61.4

Q ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHH
Q psy2152          70 HEVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQ  149 (205)
Q Consensus        70 ~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~  149 (205)
                      ...++-.++...+.|-.+++.=|..+...+..+..+|..+..+.++++.+|..|+.+..++....              +
T Consensus        34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~--------------~   99 (129)
T 3tnu_B           34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDM--------------A   99 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--------------H
Confidence            35567777777666666666666667777888888888888888888888888888766553221              2


Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHH
Q psy2152         150 ELKKEYSILHERY---TELLKTHMEYIE  174 (205)
Q Consensus       150 elkkE~~~Lh~r~---~elir~~~e~~e  174 (205)
                      ...+||+.|-+-=   --.|-||.-++|
T Consensus       100 ~ql~EYq~LlnvKl~Ld~EIatYRkLLE  127 (129)
T 3tnu_B          100 RLLREYQELMNTKLALDVEIATYRKLLE  127 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHC
Confidence            3345676666533   334666765543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=86.63  E-value=13  Score=31.07  Aligned_cols=68  Identities=10%  Similarity=0.070  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         102 LFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQELKKEYSILHERYTELLKTH  169 (205)
Q Consensus       102 l~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~elkkE~~~Lh~r~~elir~~  169 (205)
                      +...-..+-.....|+..+.+|...+..|..++......-.-||.+++...--+..+..+|+..|-.+
T Consensus        79 ~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~  146 (189)
T 2v71_A           79 LEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN  146 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            33333333344455555555555555555555555444445566666666667777777777766554

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=84.25  E-value=2.9  Score=33.53  Aligned_cols=81  Identities=20%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhcchhhhh
Q psy2152          73 ELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKI-----------ESLESIVRMLELKSKNASDHV  141 (205)
Q Consensus        73 Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v-----------~~Le~~~r~Le~k~kn~~dq~  141 (205)
                      .+.....+..+|...|..|+..|..+|.+...++...+.=+-.|...-           ..++..|.+|....+....-+
T Consensus        40 ~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll  119 (135)
T 2e7s_A           40 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL  119 (135)
T ss_dssp             HTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344466777788888999999998887766555555444443333322           233444555555555444445


Q ss_pred             hhhHHHHHHHHH
Q psy2152         142 YRLEEKEQELKK  153 (205)
Q Consensus       142 ~rleErE~elkk  153 (205)
                      .+++++-++||.
T Consensus       120 ~~lq~QL~~LK~  131 (135)
T 2e7s_A          120 DTLTLQLKNLKK  131 (135)
T ss_dssp             ------------
T ss_pred             HHHHHHHHHHHH
Confidence            566666666553

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=83.71  E-value=11  Score=27.49  Aligned_cols=72  Identities=26%  Similarity=0.316  Sum_probs=56.9

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLRKAADQKLFQI---EDALEDDKKELNSKIESLESIVRML  130 (205)
Q Consensus        59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~---ED~~~~E~keL~~~v~~Le~~~r~L  130 (205)
                      .++.+...|.....++.-++..-+.+-..||.|-..|..+|..+-.+   =|..---+-+|..+|++|.++.-=|
T Consensus         8 qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL   82 (86)
T 3swk_A            8 QVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL   82 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677788888899999999999999999999999999988766544   3444455678888888888876433

>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}

Probab=83.22  E-value=1.6  Score=34.88  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy2152          95 RKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE-LKKEYSILHERYTELLKTHMEYI  173 (205)
Q Consensus        95 Rk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e-lkkE~~~Lh~r~~elir~~~e~~  173 (205)
                      ++..+.++..++.....-..++...-.++.-.|++|.+...|.... -++|.+.+. =|+.+..|...|+.||.-|=.+|
T Consensus        25 k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaa-lkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~l  103 (130)
T 3cl3_D           25 CQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAA-LRMERQAASEEKRKLAQLQVAYHQLFQEYDNHI  103 (130)
T ss_dssp             --------------------------CTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444333332233222222333334444433332222 234444333 56788888888888888776655

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=83.18  E-value=13  Score=28.94  Aligned_cols=16  Identities=44%  Similarity=0.783  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q psy2152         151 LKKEYSILHERYTELL  166 (205)
Q Consensus       151 lkkE~~~Lh~r~~eli  166 (205)
                      .--.|+.|.+.|++++
T Consensus       104 ~Eerf~KLKe~yteLr  119 (120)
T 3i00_A          104 NEQRYSKLKEKYSELV  119 (120)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            4446888888888875

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=82.30  E-value=18  Score=34.49  Aligned_cols=19  Identities=26%  Similarity=0.401  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHhhChhHHhh
Q psy2152          30 IYQEFEKMITKYDEDVVKD   48 (205)
Q Consensus        30 Ig~EfE~lI~~yG~d~V~~   48 (205)
                      +-++++.+...|-..+.+|
T Consensus       436 ~~~~~~~~~~~Y~~~~~kg  454 (592)
T 1f5n_A          436 FVQKLQDLKKKYYEEPRKG  454 (592)
T ss_dssp             HHHHHHHHHHHHHHSSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCc
Confidence            3356777777774443333

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=81.67  E-value=13  Score=27.26  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=11.8

Q ss_pred             hHHHHHHHHhhHHHHHHHHH
Q psy2152          71 EVELELLREDNEQLVTQYER   90 (205)
Q Consensus        71 ~~Ele~Lred~e~Lv~q~Er   90 (205)
                      .-|+++||++|..|..+.+.
T Consensus        26 qmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A           26 QMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            34666677777666544444

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=81.04  E-value=14  Score=26.88  Aligned_cols=74  Identities=18%  Similarity=0.162  Sum_probs=44.0

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhhHHHHHH
Q psy2152          71 EVELELLREDNEQLVTQYEREKQLRKAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELKSKNASDHVYRLEEKEQE  150 (205)
Q Consensus        71 ~~Ele~Lred~e~Lv~q~ErEK~lRk~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k~kn~~dq~~rleErE~e  150 (205)
                      ..++..+.++...|-..|+++...|+..+                  .+..+|..+...|...+....+...+|..+..+
T Consensus        13 eeEm~~~eeel~~lke~l~k~e~~rkele------------------~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~e   74 (89)
T 3bas_A           13 EEEMKEQLKQMDKMKEDLAKTERIKKELE------------------EQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH   74 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44566666676666666666655555444                  334444444444433345555556777777777


Q ss_pred             HHHHHHHHHHHH
Q psy2152         151 LKKEYSILHERY  162 (205)
Q Consensus       151 lkkE~~~Lh~r~  162 (205)
                      |-..+..|..|.
T Consensus        75 LE~~l~el~~rl   86 (89)
T 3bas_A           75 LENEVARLKKLV   86 (89)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            777777776664

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=80.42  E-value=31  Score=30.58  Aligned_cols=36  Identities=11%  Similarity=-0.062  Sum_probs=21.1

Q ss_pred             hHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH
Q psy2152          60 LDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR   95 (205)
Q Consensus        60 Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR   95 (205)
                      +..+......-..-+..+.+..++++.++-.++..+
T Consensus       361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~  396 (471)
T 3mq9_A          361 VINAASGRQTVDEALKDAQTRITAARDGLRAVMEAR  396 (471)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhh
Confidence            344444444445566777777777777666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1ez3a_	124	Syntaxin 1A N-terminal domain {Rat (Rattus norvegi	85.61
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	81.72

>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Syntaxin 1A N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.61  E-value=4.4  Score=28.46  Aligned_cols=104  Identities=18%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             hhHHHhhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2152          59 SLDLAFTENQEHEVELELLREDNEQLVTQYEREKQLR-----KAADQKLFQIEDALEDDKKELNSKIESLESIVRMLELK  133 (205)
Q Consensus        59 ~Le~~~~~n~~~~~Ele~Lred~e~Lv~q~ErEK~lR-----k~~Eeel~~~ED~~~~E~keL~~~v~~Le~~~r~Le~k  133 (205)
                      .|+.|+.+-+.-..++..++.+.++|-...  .+.+-     .....++..+=+......+.+..++..|...++.....
T Consensus         4 ~m~~Ff~eV~~Ir~~I~~i~~~v~~i~~~~--~~~l~~~~~~~~~~~~l~~~~~~i~~~a~~ik~~Lk~l~~~~~~~~~~   81 (124)
T d1ez3a_           4 FMDEFFEQVEEIRGFIDKIAENVEEVKRKH--SAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL   81 (124)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            477888888888888999998877764443  34442     34456677777777888888888888888887764332


Q ss_pred             hcchh------hhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy2152         134 SKNAS------DHVYRLEEKEQELKKEYSILHERYTE  164 (205)
Q Consensus       134 ~kn~~------dq~~rleErE~elkkE~~~Lh~r~~e  164 (205)
                      -.+.+      .|...|--+=.++..+|+.+...|.+
T Consensus        82 ~~~s~~~Rir~~q~~~L~~kf~e~m~~yq~~q~~yr~  118 (124)
T d1ez3a_          82 NRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRE  118 (124)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22211      13444545555555555555554444

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=81.72  E-value=6.3  Score=27.26  Aligned_cols=63  Identities=14%  Similarity=0.173  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcch-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2152         111 DDKKELNSKIESLESIVRMLELKSKNA-SDHVYRLEEKEQELKKEYSILHERYTELLKTHMEYI  173 (205)
Q Consensus       111 ~E~keL~~~v~~Le~~~r~Le~k~kn~-~dq~~rleErE~elkkE~~~Lh~r~~elir~~~e~~  173 (205)
                      .+++.+..+++.|+++-+.+...+... .+-...+-++-..++.+...|.....++-...-+++
T Consensus        35 ~~rr~l~~~~e~l~~~rN~~sk~i~k~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~l   98 (110)
T d1seta1          35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALL   98 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567788888888877776555321 122233445555556666666665555554444443