Psyllid ID: psy2159
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R548 | 198 | GTP-binding protein SAR1a | yes | N/A | 1.0 | 0.979 | 0.635 | 9e-69 | |
| Q9NR31 | 198 | GTP-binding protein SAR1a | yes | N/A | 1.0 | 0.979 | 0.635 | 9e-69 | |
| P36536 | 198 | GTP-binding protein SAR1a | yes | N/A | 1.0 | 0.979 | 0.635 | 2e-68 | |
| Q9CQC9 | 198 | GTP-binding protein SAR1b | no | N/A | 0.984 | 0.964 | 0.633 | 3e-68 | |
| Q52NJ3 | 198 | GTP-binding protein SAR1a | yes | N/A | 1.0 | 0.979 | 0.630 | 6e-68 | |
| Q3T0D7 | 198 | GTP-binding protein SAR1a | yes | N/A | 1.0 | 0.979 | 0.630 | 6e-68 | |
| Q5PYH3 | 198 | GTP-binding protein SAR1b | no | N/A | 0.984 | 0.964 | 0.628 | 8e-68 | |
| Q9Y6B6 | 198 | GTP-binding protein SAR1b | no | N/A | 0.984 | 0.964 | 0.628 | 8e-68 | |
| Q3T0T7 | 198 | GTP-binding protein SAR1b | no | N/A | 0.984 | 0.964 | 0.628 | 9e-68 | |
| Q9QVY3 | 198 | GTP-binding protein SAR1b | no | N/A | 0.984 | 0.964 | 0.623 | 1e-67 |
| >sp|Q5R548|SAR1A_PONAB GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 259 bits (661), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 153/195 (78%), Gaps = 1/195 (0%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK EL+ L+ D+
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDET 123
Query: 120 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
+++VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Pongo abelii (taxid: 9601) |
| >sp|Q9NR31|SAR1A_HUMAN GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 153/195 (78%), Gaps = 1/195 (0%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK EL+ L+ D+
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDET 123
Query: 120 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
+++VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus (By similarity). Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Homo sapiens (taxid: 9606) |
| >sp|P36536|SAR1A_MOUSE GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 153/195 (78%), Gaps = 1/195 (0%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LLQMLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK EL+ L+ D+
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDET 123
Query: 120 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
+++VPILILGNKID DA SE+++R GLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Mus musculus (taxid: 10090) |
| >sp|Q9CQC9|SAR1B_MOUSE GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (657), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 121/191 (63%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Mus musculus (taxid: 10090) |
| >sp|Q52NJ3|SAR1A_PIG GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 152/195 (77%), Gaps = 1/195 (0%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D R ESK EL+ L+ D+
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDET 123
Query: 120 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
+++VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Sus scrofa (taxid: 9823) |
| >sp|Q3T0D7|SAR1A_BOVIN GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (654), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 152/195 (77%), Gaps = 1/195 (0%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D R ESK EL+ L+ D+
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDET 123
Query: 120 LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
+++VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Required to maintain SEC16A localization at discrete locations on the ER membrane perhaps by preventing its dissociation. SAR1A-GTP-dependent assembly of SEC16A on the ER membrane forms an organized scaffold defining endoplasmic reticulum exit sites (ERES). Bos taurus (taxid: 9913) |
| >sp|Q5PYH3|SAR1B_PIG GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Sus scrofa (taxid: 9823) |
| >sp|Q9Y6B6|SAR1B_HUMAN GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Homo sapiens (taxid: 9606) |
| >sp|Q3T0T7|SAR1B_BOVIN GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 120/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Bos taurus (taxid: 9913) |
| >sp|Q9QVY3|SAR1B_CRIGR GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 119/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGH+QARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
Involved in transport from the endoplasmic reticulum to the Golgi apparatus. Activated by the guanine nucleotide exchange factor PREB. Involved in the selection of the protein cargo and the assembly of the COPII coat complex. Cricetulus griseus (taxid: 10029) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | ||||||
| 307184460 | 193 | GTP-binding protein SAR1b [Camponotus fl | 0.984 | 0.989 | 0.732 | 4e-75 | |
| 322788175 | 193 | hypothetical protein SINV_06472 [Solenop | 0.984 | 0.989 | 0.727 | 8e-75 | |
| 156547852 | 193 | PREDICTED: GTP-binding protein SAR1b-lik | 0.984 | 0.989 | 0.722 | 1e-74 | |
| 31208009 | 193 | AGAP004098-PA [Anopheles gambiae str. PE | 0.984 | 0.989 | 0.732 | 2e-74 | |
| 157124857 | 193 | GTP-binding protein sar1 [Aedes aegypti] | 0.984 | 0.989 | 0.743 | 2e-74 | |
| 91091500 | 193 | PREDICTED: similar to AGAP004098-PA [Tri | 0.984 | 0.989 | 0.717 | 2e-74 | |
| 307209691 | 193 | GTP-binding protein SAR1b [Harpegnathos | 0.984 | 0.989 | 0.722 | 2e-74 | |
| 383857327 | 193 | PREDICTED: GTP-binding protein SAR1b-lik | 0.984 | 0.989 | 0.727 | 2e-74 | |
| 46561766 | 193 | sar1 [Homalodisca vitripennis] | 0.984 | 0.989 | 0.727 | 2e-74 | |
| 170052591 | 193 | GTP-binding protein SAR2 [Culex quinquef | 0.984 | 0.989 | 0.743 | 2e-74 |
| >gi|307184460|gb|EFN70863.1| GTP-binding protein SAR1b [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 140/191 (73%), Positives = 157/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFAGVLNYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDRSR PESK ELD LL D+ L+
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDASDRSRLPESKTELDALLTDEQLSAC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+L+LGNKID AASEDE+R+FF LYG TTGK R + RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKVARNEIPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322788175|gb|EFZ13957.1| hypothetical protein SINV_06472 [Solenopsis invicta] gi|332027699|gb|EGI67767.1| GTP-binding protein SAR1b [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 285 bits (728), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 157/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFAGVLNYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDR+R PESK ELD LL D+ L+
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDASDRTRLPESKAELDALLTDEQLSAC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+L+LGNKID AASEDE+R+FF LYG TTGK R + RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKIARSEIPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156547852|ref|XP_001605005.1| PREDICTED: GTP-binding protein SAR1b-like isoform 2 [Nasonia vitripennis] gi|156547854|ref|XP_001604983.1| PREDICTED: GTP-binding protein SAR1b-like isoform 1 [Nasonia vitripennis] gi|345485411|ref|XP_003425264.1| PREDICTED: GTP-binding protein SAR1b-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 158/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDR+R PES+ ELD LL D+ L+
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDASDRTRLPESRAELDALLTDEQLSAC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+L+LGNKID AASEDE+R+FF L+G TTGK PR + RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLVLGNKIDKPGAASEDELRNFFNLFGQTTGKGKVPRSDIPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|31208009|ref|XP_312971.1| AGAP004098-PA [Anopheles gambiae str. PEST] gi|347971235|ref|XP_003436713.1| AGAP004098-PB [Anopheles gambiae str. PEST] gi|30177041|gb|EAA08621.2| AGAP004098-PA [Anopheles gambiae str. PEST] gi|333468575|gb|EGK96987.1| AGAP004098-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 140/191 (73%), Positives = 160/191 (83%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA DR+RF ESK ELD+LL D+AL++
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDRTRFTESKNELDSLLTDEALSNC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+LILGNKID AASE+E+R++F L+ LTTGK PR L RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLILGNKIDKPGAASEEELRNYFALFQLTTGKGKVPRSELPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157124857|ref|XP_001660557.1| GTP-binding protein sar1 [Aedes aegypti] gi|94468896|gb|ABF18297.1| vesicle coat complex COPII GTPase subunit SAR1 [Aedes aegypti] gi|108873845|gb|EAT38070.1| AAEL010012-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/191 (74%), Positives = 158/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA DRSRF ESK ELD+LL D+AL++
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDRSRFAESKNELDSLLTDEALSNC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+LILGNKID AASEDE+R+ F LY LTTGK R L RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLILGNKIDKPGAASEDELRNHFALYQLTTGKGKVARNELPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91091500|ref|XP_968802.1| PREDICTED: similar to AGAP004098-PA [Tribolium castaneum] gi|270001011|gb|EEZ97458.1| hypothetical protein TcasGA2_TC011289 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/191 (71%), Positives = 158/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHLPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA+DR+RF ESK EL +LL D+ L+
Sbjct: 63 NMRFTTFDLGGHSQARRVWKDYFPAVDAIVFLIDANDRARFEESKQELVSLLTDETLSSC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+LILGNKID+ AASEDE+R ++ LYG +TGK PR L RP+ELFMCS+LKRQG+G
Sbjct: 123 PVLILGNKIDLPGAASEDEIRMYYDLYGQSTGKGKVPRSELSARPLELFMCSILKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307209691|gb|EFN86549.1| GTP-binding protein SAR1b [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/191 (72%), Positives = 157/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFAGVLNYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDR+R PES+ ELD LL D+ L+
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDASDRTRLPESRAELDALLTDEQLSAC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+L+LGNKID AASEDE+R+FF LYG TTGK R + RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLVLGNKIDKPSAASEDELRNFFNLYGQTTGKGKISRNEIPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383857327|ref|XP_003704156.1| PREDICTED: GTP-binding protein SAR1b-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 156/191 (81%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFAGVLNYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDRSR PESK E D LL D+ L+
Sbjct: 63 NMRFTTFDLGGHPQARRVWKDYFPAVDAIVFLVDASDRSRLPESKAEFDALLTDEQLSAC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+L+LGNKID AASEDE+R++F LYG TTGK R L RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLVLGNKIDKPGAASEDELRNYFNLYGQTTGKGKISRSELSGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|46561766|gb|AAT01088.1| sar1 [Homalodisca vitripennis] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 139/191 (72%), Positives = 160/191 (83%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
+W F VL LGL+KKSGKLLFLGLDNAGKT LL MLK+DR AQ +PTLHPTSEELS+G
Sbjct: 3 LWDWFTGVLGYLGLYKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQPVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF++DASDR R PES+ EL +LLAD++L++
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLVDASDRDRLPESQSELFSLLADESLSNC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+LILGNKID AASEDE+R FF LYG TTGK PR LQ RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLILGNKIDRHGAASEDELRGFFNLYGQTTGKTKVPRSELQARPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
+GFRWLA YID
Sbjct: 183 DGFRWLAEYID 193
|
Source: Homalodisca vitripennis Species: Homalodisca vitripennis Genus: Homalodisca Family: Cicadellidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170052591|ref|XP_001862291.1| GTP-binding protein SAR2 [Culex quinquefasciatus] gi|167873446|gb|EDS36829.1| GTP-binding protein SAR2 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 142/191 (74%), Positives = 158/191 (82%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
IW F VL LGLWKKSGKLLFLGLDNAGKT LL MLK+DR AQH+PTLHPTSEELS+G
Sbjct: 3 IWDWFTGVLGYLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIG 62
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFPAVDAIVF+IDA DRSRF ESK ELD+LL D+AL++
Sbjct: 63 NMRFTTFDLGGHTQARRVWKDYFPAVDAIVFLIDAWDRSRFTESKNELDSLLTDEALSNC 122
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
P+LILGNKID AASEDE+R+ F LY LTTGK R L RP+ELFMCSVLKRQG+G
Sbjct: 123 PVLILGNKIDKPGAASEDELRNHFALYQLTTGKGKVARNELPGRPLELFMCSVLKRQGYG 182
Query: 184 NGFRWLANYID 194
GFRWLA YID
Sbjct: 183 EGFRWLAQYID 193
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 194 | ||||||
| UNIPROTKB|F1NT40 | 198 | SAR1B "Uncharacterized protein | 1.0 | 0.979 | 0.620 | 1.9e-60 | |
| UNIPROTKB|Q9NR31 | 198 | SAR1A "GTP-binding protein SAR | 1.0 | 0.979 | 0.620 | 3.1e-60 | |
| RGD|1359540 | 198 | Sar1a "SAR1 homolog A (S. cere | 1.0 | 0.979 | 0.620 | 3.1e-60 | |
| MGI|MGI:98230 | 198 | Sar1a "SAR1 gene homolog A (S. | 1.0 | 0.979 | 0.620 | 8.1e-60 | |
| UNIPROTKB|Q3T0D7 | 198 | SAR1A "GTP-binding protein SAR | 1.0 | 0.979 | 0.615 | 1e-59 | |
| UNIPROTKB|E2RQR5 | 198 | TYSND1 "Uncharacterized protei | 1.0 | 0.979 | 0.615 | 1e-59 | |
| UNIPROTKB|Q52NJ3 | 198 | SAR1A "GTP-binding protein SAR | 1.0 | 0.979 | 0.615 | 1e-59 | |
| MGI|MGI:1913647 | 198 | Sar1b "SAR1 gene homolog B (S. | 0.984 | 0.964 | 0.612 | 3.5e-59 | |
| ZFIN|ZDB-GENE-040426-1958 | 198 | sar1b "SAR1 homolog B (S. cere | 0.984 | 0.964 | 0.612 | 3.5e-59 | |
| UNIPROTKB|Q5PYH3 | 198 | SAR1B "GTP-binding protein SAR | 0.984 | 0.964 | 0.607 | 7.3e-59 |
| UNIPROTKB|F1NT40 SAR1B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 121/195 (62%), Positives = 145/195 (74%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID +A SE+++R FGLYG TTGK P + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRPEAISEEKLREIFGLYGQTTGKGNVPLKDLNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| UNIPROTKB|Q9NR31 SAR1A "GTP-binding protein SAR1a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 121/195 (62%), Positives = 144/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| RGD|1359540 Sar1a "SAR1 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 121/195 (62%), Positives = 144/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| MGI|MGI:98230 Sar1a "SAR1 gene homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
Identities = 121/195 (62%), Positives = 144/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LLQMLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D SR ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R GLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| UNIPROTKB|Q3T0D7 SAR1A "GTP-binding protein SAR1a" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 120/195 (61%), Positives = 143/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D R ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| UNIPROTKB|E2RQR5 TYSND1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 120/195 (61%), Positives = 143/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D R ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| UNIPROTKB|Q52NJ3 SAR1A "GTP-binding protein SAR1a" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 120/195 (61%), Positives = 143/195 (73%)
Query: 1 MFE-IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE 59
+FE I+ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEE
Sbjct: 4 IFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEE 63
Query: 60 LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXX 119
L++ + FTT DLGGH QARRVW++Y PA++ IVF++D +D R ESK E
Sbjct: 64 LTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMTDET 123
Query: 120 XXXVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179
VPILILGNKID DA SE+++R FGLYG TTGK + L RPME+FMCSVLKR
Sbjct: 124 ISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSVLKR 183
Query: 180 QGFGNGFRWLANYID 194
QG+G GFRWL+ YID
Sbjct: 184 QGYGEGFRWLSQYID 198
|
|
| MGI|MGI:1913647 Sar1b "SAR1 gene homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 117/191 (61%), Positives = 141/191 (73%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK E V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
|
| ZFIN|ZDB-GENE-040426-1958 sar1b "SAR1 homolog B (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 117/191 (61%), Positives = 141/191 (73%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KKSGKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXV 123
+ FTT DLGGH QARRVW++Y PA++ IVF++D D R ESK E V
Sbjct: 68 GMTFTTFDLGGHAQARRVWKNYLPAINGIVFLVDCIDHGRLAESKTELDALMTDETIGNV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+++R FGLYG TTGK P + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDKPEAISEEKLREIFGLYGQTTGKGNIPLKELNTRPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRWL+ YID
Sbjct: 188 EGFRWLSQYID 198
|
|
| UNIPROTKB|Q5PYH3 SAR1B "GTP-binding protein SAR1b" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 116/191 (60%), Positives = 141/191 (73%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEXXXXXXXXXXXXV 123
+ FTT DLGGHVQARRVW++Y PA++ IVF++D +D R ESK E V
Sbjct: 68 GMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04267 | SAR1B_BRACM | No assigned EC number | 0.5925 | 0.9639 | 0.9589 | N/A | N/A |
| O04266 | SAR1A_BRACM | No assigned EC number | 0.5967 | 0.9587 | 0.9637 | N/A | N/A |
| P0C583 | SAR1_NEUCR | 3, ., 6, ., 5, ., - | 0.5947 | 0.9639 | 0.9894 | N/A | N/A |
| Q6BVA7 | SAR1_DEBHA | 3, ., 6, ., 5, ., - | 0.5967 | 0.9484 | 0.9684 | yes | N/A |
| Q9NR31 | SAR1A_HUMAN | No assigned EC number | 0.6358 | 1.0 | 0.9797 | yes | N/A |
| Q5PYH3 | SAR1B_PIG | No assigned EC number | 0.6282 | 0.9845 | 0.9646 | no | N/A |
| Q9CQC9 | SAR1B_MOUSE | No assigned EC number | 0.6335 | 0.9845 | 0.9646 | no | N/A |
| Q9QVY3 | SAR1B_CRIGR | No assigned EC number | 0.6230 | 0.9845 | 0.9646 | no | N/A |
| Q6CWR7 | SAR1_KLULA | 3, ., 6, ., 5, ., - | 0.5806 | 0.9329 | 0.9526 | yes | N/A |
| Q5BGB9 | SAR1_EMENI | 3, ., 6, ., 5, ., - | 0.6344 | 0.9432 | 0.9682 | yes | N/A |
| P78976 | SAR1_HYPJE | 3, ., 6, ., 5, ., - | 0.6344 | 0.9432 | 0.9682 | N/A | N/A |
| Q01475 | SAR1_SCHPO | 3, ., 6, ., 5, ., - | 0.6021 | 0.9484 | 0.9684 | yes | N/A |
| Q5HZY2 | SAR1B_RAT | No assigned EC number | 0.6230 | 0.9845 | 0.9646 | no | N/A |
| Q3T0T7 | SAR1B_BOVIN | No assigned EC number | 0.6282 | 0.9845 | 0.9646 | no | N/A |
| Q5R548 | SAR1A_PONAB | No assigned EC number | 0.6358 | 1.0 | 0.9797 | yes | N/A |
| Q9Y6B6 | SAR1B_HUMAN | No assigned EC number | 0.6282 | 0.9845 | 0.9646 | no | N/A |
| Q877B9 | SAR1_ASPOR | 3, ., 6, ., 5, ., - | 0.6451 | 0.9432 | 0.9682 | yes | N/A |
| Q755D7 | SAR1_ASHGO | 3, ., 6, ., 5, ., - | 0.5860 | 0.9329 | 0.9526 | yes | N/A |
| Q0UKC0 | SAR1_PHANO | 3, ., 6, ., 5, ., - | 0.625 | 0.9329 | 0.9783 | N/A | N/A |
| P36536 | SAR1A_MOUSE | No assigned EC number | 0.6358 | 1.0 | 0.9797 | yes | N/A |
| Q01474 | SAR1B_ARATH | No assigned EC number | 0.5935 | 0.9639 | 0.9689 | no | N/A |
| Q559R0 | SAR1A_DICDI | No assigned EC number | 0.5537 | 0.9381 | 0.9680 | yes | N/A |
| Q0CUN7 | SAR1_ASPTN | 3, ., 6, ., 5, ., - | 0.6397 | 0.9432 | 0.9682 | N/A | N/A |
| A1D4D1 | SAR1_NEOFI | 3, ., 6, ., 5, ., - | 0.6451 | 0.9432 | 0.9682 | N/A | N/A |
| Q9P4C8 | SAR1_PICPG | 3, ., 6, ., 5, ., - | 0.6021 | 0.9484 | 0.9684 | yes | N/A |
| Q2HA55 | SAR1_CHAGB | 3, ., 6, ., 5, ., - | 0.6216 | 0.9381 | 0.9578 | N/A | N/A |
| P52884 | SAR2_SOLLC | No assigned EC number | 0.6075 | 0.9587 | 0.9637 | N/A | N/A |
| P0CR30 | SAR1_CRYNJ | 3, ., 6, ., 5, ., - | 0.6397 | 0.9432 | 0.9682 | yes | N/A |
| P0CR31 | SAR1_CRYNB | 3, ., 6, ., 5, ., - | 0.6397 | 0.9432 | 0.9682 | N/A | N/A |
| Q4WJS7 | SAR1_ASPFU | 3, ., 6, ., 5, ., - | 0.6397 | 0.9432 | 0.9682 | yes | N/A |
| P0C951 | SAR1_ASPNC | 3, ., 6, ., 5, ., - | 0.6397 | 0.9432 | 0.9682 | yes | N/A |
| P0C950 | SAR1_ASPNG | 3, ., 6, ., 5, ., - | 0.6344 | 0.9432 | 0.9682 | yes | N/A |
| A5E5G3 | SAR1_LODEL | 3, ., 6, ., 5, ., - | 0.5806 | 0.9484 | 0.9684 | N/A | N/A |
| Q3T0D7 | SAR1A_BOVIN | No assigned EC number | 0.6307 | 1.0 | 0.9797 | yes | N/A |
| Q6CB54 | SAR1_YARLI | 3, ., 6, ., 5, ., - | 0.6290 | 0.9484 | 0.9684 | yes | N/A |
| Q4P0I7 | SAR1_USTMA | 3, ., 6, ., 5, ., - | 0.6021 | 0.9432 | 0.9682 | N/A | N/A |
| Q6FUZ9 | SAR1_CANGA | 3, ., 6, ., 5, ., - | 0.5751 | 0.9690 | 0.9947 | yes | N/A |
| O04834 | SAR1A_ARATH | No assigned EC number | 0.5913 | 0.9587 | 0.9637 | yes | N/A |
| Q52NJ3 | SAR1A_PIG | No assigned EC number | 0.6307 | 1.0 | 0.9797 | yes | N/A |
| Q5EMZ6 | SAR1_MAGO7 | 3, ., 6, ., 5, ., - | 0.6236 | 0.9432 | 0.9682 | N/A | N/A |
| A3LTA2 | SAR1_PICST | 3, ., 6, ., 5, ., - | 0.5913 | 0.9484 | 0.9684 | yes | N/A |
| P20606 | SAR1_YEAST | 3, ., 6, ., 5, ., - | 0.5833 | 0.9639 | 0.9842 | yes | N/A |
| Q23445 | SAR1_CAEEL | No assigned EC number | 0.6 | 0.9793 | 0.9844 | yes | N/A |
| A5DR82 | SAR1_PICGU | 3, ., 6, ., 5, ., - | 0.5913 | 0.9484 | 0.9684 | N/A | N/A |
| Q59S78 | SAR1_CANAL | 3, ., 6, ., 5, ., - | 0.5806 | 0.9484 | 0.9684 | N/A | N/A |
| A1CRG9 | SAR1_ASPCL | 3, ., 6, ., 5, ., - | 0.6451 | 0.9432 | 0.9682 | N/A | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 194 | |||
| cd00879 | 191 | cd00879, Sar1, Sar1 is an essential component of C | 1e-109 | |
| smart00178 | 184 | smart00178, SAR, Sar1p-like members of the Ras-fam | 2e-90 | |
| pfam00025 | 174 | pfam00025, Arf, ADP-ribosylation factor family | 3e-79 | |
| cd00878 | 158 | cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf | 2e-45 | |
| cd04151 | 158 | cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | 7e-35 | |
| cd04153 | 174 | cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) | 8e-33 | |
| cd04155 | 174 | cd04155, Arl3, Arf-like 3 (Arl3) GTPase | 3e-31 | |
| cd04156 | 160 | cd04156, ARLTS1, Arf-like tumor suppressor gene 1 | 5e-29 | |
| cd04157 | 162 | cd04157, Arl6, Arf-like 6 (Arl6) GTPase | 7e-29 | |
| cd04149 | 168 | cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | 1e-27 | |
| cd04159 | 159 | cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl | 3e-27 | |
| cd04154 | 173 | cd04154, Arl2, Arf-like 2 (Arl2) GTPase | 6e-27 | |
| cd04160 | 168 | cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | 4e-26 | |
| smart00177 | 175 | smart00177, ARF, ARF-like small GTPases; ARF, ADP- | 2e-25 | |
| PLN00223 | 181 | PLN00223, PLN00223, ADP-ribosylation factor; Provi | 2e-25 | |
| cd04150 | 159 | cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A | 4e-25 | |
| PTZ00133 | 182 | PTZ00133, PTZ00133, ADP-ribosylation factor; Provi | 5e-25 | |
| cd04158 | 169 | cd04158, ARD1, (ADP-ribosylation factor domain pro | 2e-23 | |
| cd04162 | 164 | cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp | 2e-21 | |
| COG1100 | 219 | COG1100, COG1100, GTPase SAR1 and related small G | 9e-21 | |
| cd04161 | 167 | cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (A | 2e-20 | |
| cd04152 | 183 | cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) | 2e-16 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-14 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 7e-11 | |
| cd04105 | 202 | cd04105, SR_beta, Signal recognition particle rece | 3e-10 | |
| COG2229 | 187 | COG2229, COG2229, Predicted GTPase [General functi | 8e-07 | |
| pfam00503 | 329 | pfam00503, G-alpha, G-protein alpha subunit | 2e-05 | |
| pfam08477 | 116 | pfam08477, Miro, Miro-like protein | 9e-05 | |
| pfam09439 | 181 | pfam09439, SRPRB, Signal recognition particle rece | 1e-04 | |
| cd04147 | 197 | cd04147, Ras_dva, Ras - dorsal-ventral anterior lo | 1e-04 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 6e-04 | |
| cd00880 | 161 | cd00880, Era_like, E | 0.001 | |
| pfam00071 | 162 | pfam00071, Ras, Ras family | 0.004 |
| >gnl|CDD|206645 cd00879, Sar1, Sar1 is an essential component of COPII vesicle coats | Back alignment and domain information |
|---|
Score = 308 bits (792), Expect = e-109
Identities = 122/190 (64%), Positives = 150/190 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I+ F VL LGL+KK K++FLGLDNAGKT LL MLK+DR AQH+PTLHPTSEEL++G
Sbjct: 2 IFDWFYNVLSSLGLYKKEAKIVFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG 61
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
++ FTT DLGGH QARRVW+DYFP VD IVF++DA+D RF ESK ELD+LL D+ L +V
Sbjct: 62 NVKFTTFDLGGHEQARRVWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLNDEELANV 121
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID A SE+E+R GLYG TTGK ++ +RP+E+FMCSV+KRQG+G
Sbjct: 122 PILILGNKIDKPGAVSEEELREALGLYGTTTGKGGVSLKVSNIRPVEVFMCSVVKRQGYG 181
Query: 184 NGFRWLANYI 193
GFRWL+ Y+
Sbjct: 182 EGFRWLSQYL 191
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. Length = 191 |
| >gnl|CDD|197556 smart00178, SAR, Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Score = 262 bits (670), Expect = 2e-90
Identities = 116/186 (62%), Positives = 142/186 (76%), Gaps = 5/186 (2%)
Query: 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67
F ++L LGLW K K+LFLGLDNAGKT LL MLKNDR AQH PT HPTSEEL++G+I F
Sbjct: 4 FYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKF 63
Query: 68 TTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
TT DLGGH QARR+W+DYFP V+ IV+++DA D+ RF ESK ELD LL+D+ L VP LI
Sbjct: 64 TTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLI 123
Query: 128 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187
LGNKID AASEDE+R+ GL TTGK + +RP+E+FMCSV++R G+G GF+
Sbjct: 124 LGNKIDAPYAASEDELRYALGLTNTTTGK-----GKVGVRPVEVFMCSVVRRMGYGEGFK 178
Query: 188 WLANYI 193
WL+ YI
Sbjct: 179 WLSQYI 184
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. Length = 184 |
| >gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family | Back alignment and domain information |
|---|
Score = 233 bits (597), Expect = 3e-79
Identities = 74/186 (39%), Positives = 105/186 (56%), Gaps = 12/186 (6%)
Query: 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67
F +L +L W K ++L LGLDNAGKT +L LK +PT+ E ++ ++ F
Sbjct: 1 FLSILAKLFGWNKEMRILILGLDNAGKTTILYKLKLGEIVTTIPTIGFNVETVTYKNVKF 60
Query: 68 TTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
T D+GG R +WR+YFP DA++F++D++DR R E+K EL LL ++ L D P+LI
Sbjct: 61 TVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLI 120
Query: 128 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187
L NK D+ A SE E+R GL+ L RP E+ CS + +G G
Sbjct: 121 LANKQDLPGAMSEAEIRELLGLHELKD------------RPWEIQGCSAVTGEGLDEGLD 168
Query: 188 WLANYI 193
WL+NYI
Sbjct: 169 WLSNYI 174
|
Pfam combines a number of different Prosite families together. Length = 174 |
| >gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases | Back alignment and domain information |
|---|
Score = 146 bits (372), Expect = 2e-45
Identities = 56/169 (33%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L LK +PT+ E + ++ FT D+GG + R +W
Sbjct: 1 RILMLGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVKFTVWDVGGQDKIRPLW 60
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
+ Y+ D ++F++D+SDR R E+K EL LL ++ L P+LIL NK D+ A +E E
Sbjct: 61 KHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESE 120
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
+ GL + R + CS + G G WL
Sbjct: 121 LIELLGLESIKG------------RRWHIQPCSAVTGDGLDEGLDWLIE 157
|
Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158 |
| >gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1) | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 7e-35
Identities = 58/169 (34%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG R W
Sbjct: 1 RILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYW 60
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R Y+ DAI++++D++DR R SK EL +L ++ L D +L+ NK D+ A SE E
Sbjct: 61 RCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEEELKDAVLLVFANKQDMPGALSEAE 120
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
V GL L R ++F S K +G G WL N
Sbjct: 121 VAEKLGLSELKD------------RTWQIFKTSATKGEGLDEGMDWLVN 157
|
Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158 |
| >gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 8e-33
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 14/170 (8%)
Query: 23 KLLFLGLDNAGKTFLL-QMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81
K++ +GLDNAGKT +L Q L + PT+ EE+ +I F D+GG R
Sbjct: 17 KVIIVGLDNAGKTTILYQFLLGEVVHTS-PTIGSNVEEIVYKNIRFLMWDIGGQESLRSS 75
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED 141
W Y+ DA++ +ID++DR R P +K EL +LA + L +L+L NK D+ A +
Sbjct: 76 WNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPA 135
Query: 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
E+ GL + + C L +G G W+A+
Sbjct: 136 EISESLGLTSIRD------------HTWHIQGCCALTGEGLPEGLDWIAS 173
|
Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174 |
| >gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 3e-31
Identities = 52/172 (30%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
++ ++L LGLDNAGKT +L+ L ++ + PT + + D+GG +
Sbjct: 13 RQEVRILLLGLDNAGKTTILKQLASEDISHITPTQGFNIKNVQADGFKLNVWDIGGQRKI 72
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R WR+YF D ++++ID++DR RF E+ EL LL ++ L VP+L+ NK D+ AA
Sbjct: 73 RPYWRNYFENTDVLIYVIDSADRKRFEEAGQELVELLEEEKLAGVPVLVFANKQDLLTAA 132
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
+EV L ++ R + CS +G G W+
Sbjct: 133 PAEEVAEALNL------------HDIRDRSWHIQACSAKTGEGLQEGMNWVC 172
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174 |
| >gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11) | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 5e-29
Identities = 53/169 (31%), Positives = 89/169 (52%), Gaps = 12/169 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRV 81
++L LGLD+AGK+ LL LK+ +PT+ E L + + T D+GG + R V
Sbjct: 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTV 60
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED 141
W+ Y D +V+++D+SD +R ES+ EL ++L ++ + VP+++L NK D+ A + +
Sbjct: 61 WKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAE 120
Query: 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
E+ F L ++ R + CS + +G FR LA
Sbjct: 121 EITRRFKL-----------KKYCSDRDWYVQPCSAVTGEGLAEAFRKLA 158
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160 |
| >gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-29
Identities = 55/172 (31%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 24 LLFLGLDNAGKTFLLQMLK--NDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81
+L LGLDN+GKT ++ LK N ++ +PT+ E G++ FT D+ G + R +
Sbjct: 2 ILVLGLDNSGKTTIINQLKPSNAQSQNIVPTVGFNVESFKKGNLSFTAFDMSGQGKYRGL 61
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLL--ADDALTDVPILILGNKIDIFDAAS 139
W Y+ + I+F+ID+SDR R +K EL+ LL D +PIL NK+D+ DA +
Sbjct: 62 WEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKHRRIPILFYANKMDLPDALT 121
Query: 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
++ L E ++ +P +F S L +G G WL
Sbjct: 122 AVKITQLLCL------------ENIKDKPWHIFASSALTGEGLDEGVDWLQA 161
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162 |
| >gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6) | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-27
Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 12/173 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D+GG +
Sbjct: 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKI 66
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R +WR Y+ ++F++D++DR R E++ EL ++ D + D +L+ NK D+ DA
Sbjct: 67 RPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM 126
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
E++ GL ++ R + G G WL++
Sbjct: 127 KPHEIQEKLGL------------TRIRDRNWYVQPSCATSGDGLYEGLTWLSS 167
|
Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168 |
| >gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 3e-27
Identities = 47/138 (34%), Positives = 79/138 (57%), Gaps = 7/138 (5%)
Query: 27 LGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85
+GL N+GKT L+ ++ + + ++ PT+ +++ G++ DLGG + R +W Y
Sbjct: 5 VGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKVTKGNVTIKVWDLGGQPRFRSMWERY 64
Query: 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRH 145
V+AIV+++DA+DR + +K EL +LL +L +P+L+LGNK D+ A S DE+
Sbjct: 65 CRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIE 124
Query: 146 FFGLYGLTTGKEFTPREI 163
L K T RE+
Sbjct: 125 QMNL------KSITDREV 136
|
Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159 |
| >gnl|CDD|206720 cd04154, Arl2, Arf-like 2 (Arl2) GTPase | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-27
Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 12/169 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L LGLDNAGKT +L+ + + PTL + L D+GG R W
Sbjct: 16 RILMLGLDNAGKTTILKKFNGEDISTISPTLGFNIKTLEYNGYKLNIWDVGGQKSLRSYW 75
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R+YF + DA+++++D+SDR+R + K EL LL ++ L +LI NK D+ A S +E
Sbjct: 76 RNYFESTDALIWVVDSSDRARLEDCKRELQKLLVEERLAGATLLIFANKQDLPGALSPEE 135
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
+R L + ++ +F CS + + +G WL +
Sbjct: 136 IREVLEL------------DSIKSHHWRIFGCSAVTGENLLDGIDWLVD 172
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. Length = 173 |
| >gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1) | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 4e-26
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 18/173 (10%)
Query: 25 LFLGLDNAGKTFLLQMLKNDRTAQH--------MPTLHPTSEELSMGDIVFTTHDLGGHV 76
L LGLDNAGKT L+ K + + PT+ + +G DLGG
Sbjct: 3 LILGLDNAGKTTFLEQTKTKFSKNYKGLNPSKITPTVGLNIGTIEVGKARLMFWDLGGQE 62
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
+ R +W Y+ ++++ID++DR RF ESK + ++ ++AL VP+L+L NK D+ D
Sbjct: 63 ELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPD 122
Query: 137 AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189
A S E++ F ++ R + S L+ +G G WL
Sbjct: 123 ALSVAEIKEVFDDCI----------ALIGRRDCLVQPVSALEGEGVEEGIEWL 165
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168 |
| >gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 2e-25
Identities = 47/134 (35%), Positives = 76/134 (56%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K ++L +GLD AGKT +L LK + +PT+ E ++ +I FT D+GG +
Sbjct: 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKI 70
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R +WR Y+ ++F++D++DR R E++ EL +L +D L D IL+ NK D+ DA
Sbjct: 71 RPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM 130
Query: 139 SEDEVRHFFGLYGL 152
E+ GL+ +
Sbjct: 131 KAAEITEKLGLHSI 144
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175 |
| >gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 2e-25
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 16/184 (8%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
L KK ++L +GLD AGKT +L LK +PT+ E + +I FT D
Sbjct: 8 LFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWD 67
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG + R +WR YF ++F++D++DR R E++ EL +L +D L D +L+ NK
Sbjct: 68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANK 127
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM--CSVLKRQGFGNGFRWL 189
D+ +A + E+ GL+ L R ++ +G G WL
Sbjct: 128 QDLPNAMNAAEITDKLGLHSL--------------RQRHWYIQSTCATSGEGLYEGLDWL 173
Query: 190 ANYI 193
+N I
Sbjct: 174 SNNI 177
|
Length = 181 |
| >gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5) | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 4e-25
Identities = 54/170 (31%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R YF ++F++D++DR R E++ EL +L +D L D +L+ NK D+ +A S E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192
V GL+ L+ R + G G WL+N
Sbjct: 122 VTDKLGLHS------------LRNRNWYIQATCATSGDGLYEGLDWLSNN 159
|
The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159 |
| >gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 5e-25
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 12/175 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KK ++L +GLD AGKT +L LK +PT+ E + ++ FT D+GG +
Sbjct: 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKL 74
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R +WR Y+ + ++F++D++DR R +++ EL+ +L++D L D +L+ NK D+ +A
Sbjct: 75 RPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM 134
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
S EV GL+ ++ R + C QG G WL+ I
Sbjct: 135 STTEVTEKLGLHS------------VRQRNWYIQGCCATTAQGLYEGLDWLSANI 177
|
Length = 182 |
| >gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1) | Back alignment and domain information |
|---|
Score = 90.9 bits (225), Expect = 2e-23
Identities = 56/168 (33%), Positives = 82/168 (48%), Gaps = 11/168 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+++ LGLD AGKT +L LK D Q +PT+ E + ++ FT D+GG + R +W
Sbjct: 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 60
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
+ Y+ A+VF+ID+S R R E+ EL LL + L D +LI NK D+ A S +E
Sbjct: 61 KHYYLNTQAVVFVIDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 120
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
+ L+ L G R + C G G WL+
Sbjct: 121 MTELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLS 157
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169 |
| >gnl|CDD|133362 cd04162, Arl9_Arfrp2_like, Arf-like 9 (Arl9)/Arfrp2-like GTPase | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 2e-21
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 24 LLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
+L LGLD AGKT LL L ++R+ + +PT S + D + ++GG R+ W
Sbjct: 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
+ Y ++F++D++D R P ++ EL LL D+P+++L NK D+ A S E
Sbjct: 62 KRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHPP--DLPLVVLANKQDLPAARSVQE 119
Query: 143 VRHFFGLYGLTTGKEFT 159
+ L + G+ +
Sbjct: 120 IHKELELEPIARGRRWI 136
|
Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. Length = 164 |
| >gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 9e-21
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTL-----HPTSEELSMGDIVFTTHD 71
L+ K K++ LG GKT LL L D + P + E +I D
Sbjct: 1 LFMKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWD 60
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
G + R + +Y+ + I+ + D++ R E E L + A DVPIL++GNK
Sbjct: 61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNK 120
Query: 132 IDIFDAASEDEV 143
ID+FD S E
Sbjct: 121 IDLFDEQSSSEE 132
|
Length = 219 |
| >gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2-like protein 1 (Arl2l1) and Arl13 | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 2e-20
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83
LL +GLDNAGKT L+ L+ + + PT+ T +L + DLGG R +W
Sbjct: 2 LLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWV 61
Query: 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEV 143
+Y+ +VF++D+SD R E K L LL ++ PIL+L NK D +A +V
Sbjct: 62 NYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADV 121
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Length = 167 |
| >gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-16
Identities = 46/131 (35%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 27 LGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGD---IVFTTHDLGGHVQARRV 81
LGLD+AGKT +L LK + +PT +E ++S+G+ + F D+GG + R +
Sbjct: 9 LGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNAKGVTFHFWDVGGQEKLRPL 68
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED 141
W+ Y D IVF++D+ D R E+K EL + VP+L+L NK D+ +A
Sbjct: 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQGVPVLVLANKQDLPNALPVS 128
Query: 142 EVRHFFGLYGL 152
EV L+ L
Sbjct: 129 EVEKLLALHEL 139
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-14
Identities = 33/178 (18%), Positives = 64/178 (35%), Gaps = 28/178 (15%)
Query: 25 LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE------LSMGDIVFTTHDLGGHVQA 78
+ +G GK+ LL L + T + L G + D G +
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 79 RRVW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133
+ R D I+ ++D++DR ++K + L + +PI+++GNKID
Sbjct: 61 GGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKID 117
Query: 134 IFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
+ + +E+ E+ ++ + +F S +G F L
Sbjct: 118 LLEEREVEELLRL--------------EELAKILGVPVFEVSAKTGEGVDELFEKLIE 161
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 7e-11
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 7/133 (5%)
Query: 22 GKLLFLGLDNAGKTFLL-QMLKNDR---TAQHMPTLH--PTSEELSMGDIVFTTHDLGGH 75
K++ +G N GK+ LL ++L N + T + T E F D G
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 76 VQARRVWRDYFPAVDAIVFIID-ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
+ R Y+ AV++ + + D E + + A + VPI+++GNKID+
Sbjct: 62 EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121
Query: 135 FDAASEDEVRHFF 147
DA + V F
Sbjct: 122 RDAKLKTHVAFLF 134
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|206691 cd04105, SR_beta, Signal recognition particle receptor, beta subunit (SR-beta), together with SR-alpha, forms the heterodimeric signal recognition particle (SRP) | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-10
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 15/132 (11%)
Query: 25 LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHP---TSEELSMGDIVFTTHDLGGHVQAR-R 80
L LG ++GKT L L + + ++ P + S T D+ GH + R +
Sbjct: 4 LLLGPSDSGKTALFTKLTTGKVRSTVTSIEPNVASFYSNSSKGKKLTLVDVPGHEKLRDK 63
Query: 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTD-------VPILILGNKID 133
+ ++ AIVF++D++ + + + L D LTD +PILI NK D
Sbjct: 64 LLEYLKASLKAIVFVVDSATFQK--NIRDVAEFLY--DILTDLEKIKNKIPILIACNKQD 119
Query: 134 IFDAASEDEVRH 145
+F A +++
Sbjct: 120 LFTAKPAKKIKE 131
|
Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this type of cancer. Length = 202 |
| >gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 8e-07
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 18/140 (12%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQML--------KNDRTAQHMPTLHPTSEELSMGDI----- 65
K++ +G AGKT ++ L + D ++ PT+ + G I
Sbjct: 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED 67
Query: 66 -VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP 124
G + + +W + ++D+S P + + + + + +P
Sbjct: 68 TGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSR----PITFHAEEIIDFLTSRNPIP 123
Query: 125 ILILGNKIDIFDAASEDEVR 144
+++ NK D+FDA +++R
Sbjct: 124 VVVAINKQDLFDALPPEKIR 143
|
Length = 187 |
| >gnl|CDD|215955 pfam00503, G-alpha, G-protein alpha subunit | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-05
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESK 108
+ + F D+GG R+ W F V AI+F++ S+ +R ES
Sbjct: 162 KFDFKGLKFRLFDVGGQRSERKKWIHCFEDVTAIIFVVSLSEYDQVLYEDDSTNRLEESL 221
Query: 109 YELDNLLADDALTDVPILILGNKIDIF 135
+ + + PI++ NK D+F
Sbjct: 222 NLFEEICNSPWFKNTPIILFLNKKDLF 248
|
G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase. A set of residues that are unique to G-alpha as compared to its ancestor the Arf-like family form a ring of residues centered on the nucleotide binding site. A Ggamma is found fused to an inactive Galpha in the Dictyostelium protein gbqA. Length = 329 |
| >gnl|CDD|219856 pfam08477, Miro, Miro-like protein | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 9e-05
Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 10/118 (8%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ 77
K++ +G +GK+ L Q++ + + + T + E+ + D GG +
Sbjct: 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRF---PESKYELDNLLADDALTDVPILILGNKI 132
+ + DAI+ + D +DR L NL +P++++GNK+
Sbjct: 61 LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL--RKLGGKIPVILVGNKL 116
|
Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116 |
| >gnl|CDD|204242 pfam09439, SRPRB, Signal recognition particle receptor beta subunit | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 31/137 (22%), Positives = 55/137 (40%), Gaps = 14/137 (10%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG--DIVFTTHDLGGHV 76
++ GL ++GKT L +L + + + P++ M FT D GHV
Sbjct: 1 SSQPAVIIAGLCDSGKTSLFTLLTTGTVKKTVTSQEPSAAYKYMLHKGFSFTLIDFPGHV 60
Query: 77 QARRVWRDYFPAVD---AIVFIIDASDRSR----FPESKYE--LDNLLADDALTDVPILI 127
+ R+ + IVF++D++ + E YE L + + ILI
Sbjct: 61 KLRQKLLETIKDSSSLRGIVFVVDSTAFPKEVTDTAEFLYEILSITELLKNG---IDILI 117
Query: 128 LGNKIDIFDAASEDEVR 144
NK + F A +++
Sbjct: 118 ACNKQESFTARPPKKIK 134
|
The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane. Length = 181 |
| >gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 1e-04
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 28/129 (21%)
Query: 23 KLLFLGLDNAGKTFLLQMLKND-------RTAQHMPTLHPTSEELSMG-DIVFTTHDLGG 74
+L+F+G GKT L+Q D RT + + + + + DI+ D G
Sbjct: 1 RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVEELHSKEYEVAGVKVTIDIL----DTSG 56
Query: 75 HVQARRVWRDYFPAV--------DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL 126
FPA+ DA + D F E K + +L VPI+
Sbjct: 57 SYS--------FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIV 108
Query: 127 ILGNKIDIF 135
++GNKID
Sbjct: 109 VVGNKIDSL 117
|
Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 6e-04
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 26/137 (18%)
Query: 28 GLDNAGKTFLLQMLKNDRT--AQHMP-TLHPTSEELSMGD---IVFT-T--------HDL 72
G NAGK+ L L A + TL PT+ + +GD ++ T T H L
Sbjct: 199 GYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPL 258
Query: 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD---NLLADDALTDVPILILG 129
V+A + + D ++ ++DASD PE +L+ ++LA+ ++PI+++
Sbjct: 259 ---VEAFKSTLEEVKEADLLLHVVDASD----PEILEKLEAVEDVLAEIGADEIPIILVL 311
Query: 130 NKID-IFDAASEDEVRH 145
NKID + D E+
Sbjct: 312 NKIDLLEDEEILAELER 328
|
Length = 411 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.001
Identities = 33/172 (19%), Positives = 58/172 (33%), Gaps = 38/172 (22%)
Query: 26 FLGLDNAGKTFLLQMLKNDRTAQ--HMP--TLHPTS---EELSMGDIVFTTHDLGG---- 74
G N GK+ LL L +P T P E L +G +V D G
Sbjct: 2 IFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLI--DTPGLDEE 59
Query: 75 ----HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130
+ + A D ++ ++D+ + E + L P+L++ N
Sbjct: 60 GGLGRERVEEARQVADRA-DLVLLVVDSD------LTPVEEEAKLGLLRERGKPVLLVLN 112
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182
KID+ + E+E R++ + + + S L +G
Sbjct: 113 KIDLVPESEEEE--------------LLRERKLELLPDLPVIAVSALPGEGI 150
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|215692 pfam00071, Ras, Ras family | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.004
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GK+ L++ +N +++PT+ + + E+ + D G +
Sbjct: 1 KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLL--ADDALTDVPILILGNKID 133
R + Y+ + + D + R F K L+ +L AD+ +VPI+++GNK D
Sbjct: 61 FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADE---NVPIVLVGNKCD 115
|
Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| PLN00223 | 181 | ADP-ribosylation factor; Provisional | 100.0 | |
| PF00025 | 175 | Arf: ADP-ribosylation factor family The prints ent | 100.0 | |
| cd04149 | 168 | Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor | 100.0 | |
| PTZ00133 | 182 | ADP-ribosylation factor; Provisional | 100.0 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 100.0 | |
| smart00177 | 175 | ARF ARF-like small GTPases; ARF, ADP-ribosylation | 100.0 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 100.0 | |
| cd04150 | 159 | Arf1_5_like Arf1-Arf5-like subfamily. This subfami | 100.0 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 100.0 | |
| KOG0092|consensus | 200 | 100.0 | ||
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 100.0 | |
| KOG0084|consensus | 205 | 100.0 | ||
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 100.0 | |
| KOG0094|consensus | 221 | 100.0 | ||
| KOG0070|consensus | 181 | 100.0 | ||
| cd04121 | 189 | Rab40 Rab40 subfamily. This subfamily contains Rab | 100.0 | |
| cd04120 | 202 | Rab12 Rab12 subfamily. Rab12 was first identified | 100.0 | |
| KOG0073|consensus | 185 | 100.0 | ||
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 100.0 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 100.0 | |
| cd04141 | 172 | Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p | 100.0 | |
| cd04161 | 167 | Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 ( | 100.0 | |
| cd04133 | 176 | Rop_like Rop subfamily. The Rop (Rho-related prote | 100.0 | |
| cd04156 | 160 | ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su | 100.0 | |
| KOG0071|consensus | 180 | 100.0 | ||
| cd04175 | 164 | Rap1 Rap1 subgroup. The Rap1 subgroup is part of t | 100.0 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 100.0 | |
| cd04172 | 182 | Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE | 100.0 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 100.0 | |
| KOG0078|consensus | 207 | 99.98 | ||
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.98 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.98 | |
| cd04126 | 220 | Rab20 Rab20 subfamily. Rab20 is one of several Rab | 99.98 | |
| cd01875 | 191 | RhoG RhoG subfamily. RhoG is a GTPase with high se | 99.98 | |
| cd04162 | 164 | Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 | 99.98 | |
| cd04127 | 180 | Rab27A Rab27a subfamily. The Rab27a subfamily cons | 99.98 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.98 | |
| KOG0080|consensus | 209 | 99.98 | ||
| cd00877 | 166 | Ran Ran (Ras-related nuclear proteins) /TC4 subfam | 99.98 | |
| cd04152 | 183 | Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i | 99.98 | |
| cd04122 | 166 | Rab14 Rab14 subfamily. Rab14 GTPases are localized | 99.98 | |
| PTZ00369 | 189 | Ras-like protein; Provisional | 99.97 | |
| cd04131 | 178 | Rnd Rnd subfamily. The Rnd subfamily contains Rnd1 | 99.97 | |
| cd01874 | 175 | Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas | 99.97 | |
| cd04107 | 201 | Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 | 99.97 | |
| cd04176 | 163 | Rap2 Rap2 subgroup. The Rap2 subgroup is part of t | 99.97 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.97 | |
| cd04174 | 232 | Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb | 99.97 | |
| PLN03071 | 219 | GTP-binding nuclear protein Ran; Provisional | 99.97 | |
| cd01871 | 174 | Rac1_like Rac1-like subfamily. The Rac1-like subfa | 99.97 | |
| cd04117 | 161 | Rab15 Rab15 subfamily. Rab15 colocalizes with the | 99.97 | |
| KOG0394|consensus | 210 | 99.97 | ||
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.97 | |
| cd04128 | 182 | Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi | 99.97 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.97 | |
| cd04108 | 170 | Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr | 99.97 | |
| smart00173 | 164 | RAS Ras subfamily of RAS small GTPases. Similar in | 99.97 | |
| cd04173 | 222 | Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb | 99.97 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.97 | |
| KOG0079|consensus | 198 | 99.97 | ||
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.97 | |
| cd04103 | 158 | Centaurin_gamma Centaurin gamma. The centaurins (a | 99.97 | |
| KOG0098|consensus | 216 | 99.97 | ||
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.97 | |
| KOG0077|consensus | 193 | 99.97 | ||
| cd04134 | 189 | Rho3 Rho3 subfamily. Rho3 is a member of the Rho f | 99.97 | |
| cd04116 | 170 | Rab9 Rab9 subfamily. Rab9 is found in late endosom | 99.97 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.97 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.97 | |
| KOG0075|consensus | 186 | 99.97 | ||
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 99.97 | |
| cd04110 | 199 | Rab35 Rab35 subfamily. Rab35 is one of several Rab | 99.97 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.97 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.97 | |
| cd04111 | 211 | Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 | 99.97 | |
| cd01860 | 163 | Rab5_related Rab5-related subfamily. This subfamil | 99.97 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 99.97 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.97 | |
| cd04113 | 161 | Rab4 Rab4 subfamily. Rab4 has been implicated in n | 99.97 | |
| smart00176 | 200 | RAN Ran (Ras-related nuclear proteins) /TC4 subfam | 99.97 | |
| cd04115 | 170 | Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u | 99.97 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.97 | |
| PF00071 | 162 | Ras: Ras family; InterPro: IPR001806 Small GTPases | 99.97 | |
| cd04132 | 187 | Rho4_like Rho4-like subfamily. Rho4 is a GTPase th | 99.97 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.97 | |
| cd04143 | 247 | Rhes_like Rhes_like subfamily. This subfamily incl | 99.97 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.97 | |
| KOG0093|consensus | 193 | 99.97 | ||
| KOG0087|consensus | 222 | 99.97 | ||
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.97 | |
| cd04125 | 188 | RabA_like RabA-like subfamily. RabA was first iden | 99.97 | |
| PLN03118 | 211 | Rab family protein; Provisional | 99.97 | |
| PLN03110 | 216 | Rab GTPase; Provisional | 99.96 | |
| cd04135 | 174 | Tc10 TC10 subfamily. TC10 is a Rho family protein | 99.96 | |
| cd04118 | 193 | Rab24 Rab24 subfamily. Rab24 is distinct from othe | 99.96 | |
| smart00174 | 174 | RHO Rho (Ras homology) subfamily of Ras-like small | 99.96 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.96 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 99.96 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.96 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 99.96 | |
| KOG0086|consensus | 214 | 99.96 | ||
| PLN03108 | 210 | Rab family protein; Provisional | 99.96 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.96 | |
| cd04146 | 165 | RERG_RasL11_like RERG/RasL11-like subfamily. RERG | 99.96 | |
| KOG0091|consensus | 213 | 99.96 | ||
| cd04148 | 221 | RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki | 99.96 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.96 | |
| cd01873 | 195 | RhoBTB RhoBTB subfamily. Members of the RhoBTB sub | 99.96 | |
| cd04123 | 162 | Rab21 Rab21 subfamily. The localization and functi | 99.96 | |
| cd01870 | 175 | RhoA_like RhoA-like subfamily. The RhoA subfamily | 99.96 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| cd01893 | 166 | Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr | 99.96 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.96 | |
| cd04130 | 173 | Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive | 99.96 | |
| KOG0072|consensus | 182 | 99.96 | ||
| cd04147 | 198 | Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v | 99.96 | |
| cd04137 | 180 | RheB Rheb (Ras Homolog Enriched in Brain) subfamil | 99.96 | |
| KOG0074|consensus | 185 | 99.96 | ||
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.95 | |
| KOG0081|consensus | 219 | 99.95 | ||
| KOG0095|consensus | 213 | 99.95 | ||
| cd00157 | 171 | Rho Rho (Ras homology) family. Members of the Rho | 99.95 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.95 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.95 | |
| KOG0088|consensus | 218 | 99.95 | ||
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.95 | |
| cd04129 | 187 | Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that | 99.94 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.94 | |
| KOG0395|consensus | 196 | 99.94 | ||
| KOG0076|consensus | 197 | 99.94 | ||
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.93 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.93 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.93 | |
| KOG0393|consensus | 198 | 99.93 | ||
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.93 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.93 | |
| KOG0083|consensus | 192 | 99.93 | ||
| KOG0097|consensus | 215 | 99.93 | ||
| cd04105 | 203 | SR_beta Signal recognition particle receptor, beta | 99.92 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.92 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.92 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.92 | |
| cd04102 | 202 | RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove | 99.92 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.92 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.92 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.92 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.92 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.91 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.91 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.91 | |
| cd00882 | 157 | Ras_like_GTPase Ras-like GTPase superfamily. The R | 99.91 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.91 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.91 | |
| PLN00023 | 334 | GTP-binding protein; Provisional | 99.91 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.9 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.9 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.9 | |
| cd01891 | 194 | TypA_BipA TypA (tyrosine phosphorylated protein A) | 99.9 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.9 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.9 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.9 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.9 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.9 | |
| PTZ00099 | 176 | rab6; Provisional | 99.9 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.9 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.89 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.89 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.89 | |
| COG1100 | 219 | GTPase SAR1 and related small G proteins [General | 99.89 | |
| TIGR00487 | 587 | IF-2 translation initiation factor IF-2. This mode | 99.89 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.89 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.89 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.89 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.88 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.88 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.88 | |
| PRK05306 | 787 | infB translation initiation factor IF-2; Validated | 99.88 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.87 | |
| COG2229 | 187 | Predicted GTPase [General function prediction only | 99.87 | |
| KOG4252|consensus | 246 | 99.87 | ||
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.87 | |
| TIGR01393 | 595 | lepA GTP-binding protein LepA. LepA (GUF1 in Sacca | 99.87 | |
| CHL00189 | 742 | infB translation initiation factor 2; Provisional | 99.87 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 99.86 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.86 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.86 | |
| TIGR00475 | 581 | selB selenocysteine-specific elongation factor Sel | 99.86 | |
| PRK12317 | 425 | elongation factor 1-alpha; Reviewed | 99.86 | |
| PF08477 | 119 | Miro: Miro-like protein; InterPro: IPR013684 Mitoc | 99.85 | |
| TIGR00483 | 426 | EF-1_alpha translation elongation factor EF-1 alph | 99.85 | |
| cd01884 | 195 | EF_Tu EF-Tu subfamily. This subfamily includes ort | 99.85 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.85 | |
| PRK05433 | 600 | GTP-binding protein LepA; Provisional | 99.85 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.84 | |
| cd04168 | 237 | TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T | 99.84 | |
| TIGR03680 | 406 | eif2g_arch translation initiation factor 2 subunit | 99.84 | |
| cd01883 | 219 | EF1_alpha Eukaryotic elongation factor 1 (EF1) alp | 99.84 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.83 | |
| KOG3883|consensus | 198 | 99.83 | ||
| TIGR00491 | 590 | aIF-2 translation initiation factor aIF-2/yIF-2. T | 99.83 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.83 | |
| TIGR01394 | 594 | TypA_BipA GTP-binding protein TypA/BipA. This bact | 99.83 | |
| PRK04000 | 411 | translation initiation factor IF-2 subunit gamma; | 99.83 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.83 | |
| KOG1489|consensus | 366 | 99.83 | ||
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.82 | |
| KOG0090|consensus | 238 | 99.82 | ||
| PRK10218 | 607 | GTP-binding protein; Provisional | 99.82 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.82 | |
| PRK04004 | 586 | translation initiation factor IF-2; Validated | 99.82 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.81 | |
| cd04165 | 224 | GTPBP1_like GTPBP1-like. Mammalian GTP binding pro | 99.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.81 | |
| PRK10512 | 614 | selenocysteinyl-tRNA-specific translation factor; | 99.8 | |
| PRK12736 | 394 | elongation factor Tu; Reviewed | 99.8 | |
| COG0532 | 509 | InfB Translation initiation factor 2 (IF-2; GTPase | 99.79 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.79 | |
| PF09439 | 181 | SRPRB: Signal recognition particle receptor beta s | 99.78 | |
| PRK12735 | 396 | elongation factor Tu; Reviewed | 99.78 | |
| PLN03126 | 478 | Elongation factor Tu; Provisional | 99.78 | |
| TIGR00485 | 394 | EF-Tu translation elongation factor TU. This align | 99.77 | |
| KOG0096|consensus | 216 | 99.77 | ||
| KOG1673|consensus | 205 | 99.77 | ||
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.77 | |
| KOG1423|consensus | 379 | 99.77 | ||
| CHL00071 | 409 | tufA elongation factor Tu | 99.77 | |
| cd04167 | 213 | Snu114p Snu114p subfamily. Snu114p is one of sever | 99.77 | |
| PLN00043 | 447 | elongation factor 1-alpha; Provisional | 99.76 | |
| PF04670 | 232 | Gtr1_RagA: Gtr1/RagA G protein conserved region; I | 99.76 | |
| PRK00049 | 396 | elongation factor Tu; Reviewed | 99.75 | |
| PRK13351 | 687 | elongation factor G; Reviewed | 99.75 | |
| cd01886 | 270 | EF-G Elongation factor G (EF-G) subfamily. Translo | 99.75 | |
| PTZ00141 | 446 | elongation factor 1- alpha; Provisional | 99.75 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.75 | |
| KOG1145|consensus | 683 | 99.75 | ||
| cd04169 | 267 | RF3 RF3 subfamily. Peptide chain release factor 3 | 99.74 | |
| TIGR02034 | 406 | CysN sulfate adenylyltransferase, large subunit. H | 99.74 | |
| cd04104 | 197 | p47_IIGP_like p47 (47-kDa) family. The p47 GTPase | 99.74 | |
| PLN03127 | 447 | Elongation factor Tu; Provisional | 99.74 | |
| cd04170 | 268 | EF-G_bact Elongation factor G (EF-G) subfamily. Tr | 99.74 | |
| PRK05124 | 474 | cysN sulfate adenylyltransferase subunit 1; Provis | 99.73 | |
| PRK00741 | 526 | prfC peptide chain release factor 3; Provisional | 99.73 | |
| cd01885 | 222 | EF2 EF2 (for archaea and eukarya). Translocation r | 99.73 | |
| PTZ00327 | 460 | eukaryotic translation initiation factor 2 gamma s | 99.73 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.72 | |
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 99.71 | |
| PRK05506 | 632 | bifunctional sulfate adenylyltransferase subunit 1 | 99.71 | |
| COG5256 | 428 | TEF1 Translation elongation factor EF-1alpha (GTPa | 99.71 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.71 | |
| KOG1707|consensus | 625 | 99.7 | ||
| TIGR00503 | 527 | prfC peptide chain release factor 3. This translat | 99.7 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.7 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.7 | |
| KOG4423|consensus | 229 | 99.69 | ||
| PRK12739 | 691 | elongation factor G; Reviewed | 99.68 | |
| KOG0462|consensus | 650 | 99.68 | ||
| COG3596 | 296 | Predicted GTPase [General function prediction only | 99.67 | |
| smart00275 | 342 | G_alpha G protein alpha subunit. Subunit of G prot | 99.67 | |
| TIGR00484 | 689 | EF-G translation elongation factor EF-G. After pep | 99.66 | |
| cd00066 | 317 | G-alpha G protein alpha subunit. The alpha subunit | 99.66 | |
| PRK00007 | 693 | elongation factor G; Reviewed | 99.65 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.64 | |
| PRK12740 | 668 | elongation factor G; Reviewed | 99.63 | |
| KOG1191|consensus | 531 | 99.62 | ||
| PRK09866 | 741 | hypothetical protein; Provisional | 99.62 | |
| PRK13768 | 253 | GTPase; Provisional | 99.61 | |
| COG0481 | 603 | LepA Membrane GTPase LepA [Cell envelope biogenesi | 99.59 | |
| KOG1532|consensus | 366 | 99.58 | ||
| PRK14845 | 1049 | translation initiation factor IF-2; Provisional | 99.56 | |
| KOG1490|consensus | 620 | 99.55 | ||
| PF03029 | 238 | ATP_bind_1: Conserved hypothetical ATP binding pro | 99.55 | |
| COG1217 | 603 | TypA Predicted membrane GTPase involved in stress | 99.55 | |
| cd01850 | 276 | CDC_Septin CDC/Septin. Septins are a conserved fam | 99.55 | |
| cd01882 | 225 | BMS1 Bms1. Bms1 is an essential, evolutionarily co | 99.54 | |
| COG5257 | 415 | GCD11 Translation initiation factor 2, gamma subun | 99.54 | |
| KOG0082|consensus | 354 | 99.51 | ||
| COG2895 | 431 | CysN GTPases - Sulfate adenylate transferase subun | 99.51 | |
| COG4917 | 148 | EutP Ethanolamine utilization protein [Amino acid | 99.51 | |
| TIGR00490 | 720 | aEF-2 translation elongation factor aEF-2. This mo | 99.5 | |
| PF04548 | 212 | AIG1: AIG1 family; InterPro: IPR006703 This entry | 99.5 | |
| TIGR00991 | 313 | 3a0901s02IAP34 GTP-binding protein (Chloroplast En | 99.5 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.49 | |
| cd01853 | 249 | Toc34_like Toc34-like (Translocon at the Outer-env | 99.48 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 99.46 | |
| PRK07560 | 731 | elongation factor EF-2; Reviewed | 99.44 | |
| KOG0458|consensus | 603 | 99.43 | ||
| TIGR00101 | 199 | ureG urease accessory protein UreG. This model rep | 99.42 | |
| TIGR00750 | 300 | lao LAO/AO transport system ATPase. Mutations have | 99.4 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.39 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.39 | |
| PLN00116 | 843 | translation elongation factor EF-2 subunit; Provis | 99.38 | |
| PTZ00416 | 836 | elongation factor 2; Provisional | 99.37 | |
| COG3276 | 447 | SelB Selenocysteine-specific translation elongatio | 99.36 | |
| KOG1144|consensus | 1064 | 99.36 | ||
| PF03308 | 266 | ArgK: ArgK protein; InterPro: IPR005129 Bacterial | 99.35 | |
| PF05049 | 376 | IIGP: Interferon-inducible GTPase (IIGP); InterPro | 99.33 | |
| COG1703 | 323 | ArgK Putative periplasmic protein kinase ArgK and | 99.32 | |
| COG0050 | 394 | TufB GTPases - translation elongation factors [Tra | 99.32 | |
| PF00503 | 389 | G-alpha: G-protein alpha subunit; InterPro: IPR001 | 99.32 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.31 | |
| TIGR00073 | 207 | hypB hydrogenase accessory protein HypB. HypB is i | 99.31 | |
| COG0378 | 202 | HypB Ni2+-binding GTPase involved in regulation of | 99.28 | |
| PF05783 | 472 | DLIC: Dynein light intermediate chain (DLIC); Inte | 99.28 | |
| smart00010 | 124 | small_GTPase Small GTPase of the Ras superfamily; | 99.26 | |
| COG0480 | 697 | FusA Translation elongation factors (GTPases) [Tra | 99.25 | |
| KOG0410|consensus | 410 | 99.25 | ||
| KOG0461|consensus | 522 | 99.24 | ||
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.24 | |
| PRK10463 | 290 | hydrogenase nickel incorporation protein HypB; Pro | 99.23 | |
| KOG3905|consensus | 473 | 99.22 | ||
| TIGR02836 | 492 | spore_IV_A stage IV sporulation protein A. A compa | 99.22 | |
| KOG3886|consensus | 295 | 99.19 | ||
| KOG0085|consensus | 359 | 99.16 | ||
| KOG3887|consensus | 347 | 99.14 | ||
| smart00053 | 240 | DYNc Dynamin, GTPase. Large GTPases that mediate v | 99.13 | |
| COG4108 | 528 | PrfC Peptide chain release factor RF-3 [Translatio | 99.12 | |
| PF00350 | 168 | Dynamin_N: Dynamin family; InterPro: IPR001401 Mem | 99.12 | |
| KOG0468|consensus | 971 | 99.1 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 99.1 | |
| TIGR00993 | 763 | 3a0901s04IAP86 chloroplast protein import componen | 99.08 | |
| PF00735 | 281 | Septin: Septin; InterPro: IPR000038 Septins consti | 99.07 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.05 | |
| KOG1707|consensus | 625 | 99.04 | ||
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 99.03 | |
| KOG0705|consensus | 749 | 99.01 | ||
| KOG0460|consensus | 449 | 99.01 | ||
| PRK00098 | 298 | GTPase RsgA; Reviewed | 98.97 | |
| KOG1486|consensus | 364 | 98.97 | ||
| COG5192 | 1077 | BMS1 GTP-binding protein required for 40S ribosome | 98.93 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 98.93 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.88 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.86 | |
| KOG0099|consensus | 379 | 98.84 | ||
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.83 | |
| COG5258 | 527 | GTPBP1 GTPase [General function prediction only] | 98.82 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 98.81 | |
| KOG0466|consensus | 466 | 98.81 | ||
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.79 | |
| KOG0459|consensus | 501 | 98.78 | ||
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 98.78 | |
| KOG1954|consensus | 532 | 98.77 | ||
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 98.77 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.77 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.77 | |
| KOG1143|consensus | 591 | 98.75 | ||
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.75 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.74 | |
| KOG1491|consensus | 391 | 98.73 | ||
| KOG2486|consensus | 320 | 98.72 | ||
| KOG1487|consensus | 358 | 98.72 | ||
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.71 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.66 | |
| COG5019 | 373 | CDC3 Septin family protein [Cell division and chro | 98.66 | |
| TIGR03596 | 276 | GTPase_YlqF ribosome biogenesis GTP-binding protei | 98.63 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 98.63 | |
| PRK09563 | 287 | rbgA GTPase YlqF; Reviewed | 98.62 | |
| KOG2655|consensus | 366 | 98.61 | ||
| KOG0447|consensus | 980 | 98.61 | ||
| COG1161 | 322 | Predicted GTPases [General function prediction onl | 98.61 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 98.6 | |
| cd01856 | 171 | YlqF YlqF. Proteins of the YlqF family contain all | 98.58 | |
| KOG0465|consensus | 721 | 98.58 | ||
| KOG1547|consensus | 336 | 98.56 | ||
| KOG1534|consensus | 273 | 98.54 | ||
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.53 | |
| cd01851 | 224 | GBP Guanylate-binding protein (GBP), N-terminal do | 98.52 | |
| KOG0464|consensus | 753 | 98.44 | ||
| TIGR03348 | 1169 | VI_IcmF type VI secretion protein IcmF. Members of | 98.41 | |
| KOG0448|consensus | 749 | 98.36 | ||
| KOG0467|consensus | 887 | 98.36 | ||
| cd03112 | 158 | CobW_like The function of this protein family is u | 98.36 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.35 | |
| PF09547 | 492 | Spore_IV_A: Stage IV sporulation protein A (spore_ | 98.33 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 98.32 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 98.3 | |
| KOG0463|consensus | 641 | 98.29 | ||
| COG0523 | 323 | Putative GTPases (G3E family) [General function pr | 98.28 | |
| TIGR03597 | 360 | GTPase_YqeH ribosome biogenesis GTPase YqeH. This | 98.26 | |
| PRK11537 | 318 | putative GTP-binding protein YjiA; Provisional | 98.26 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.25 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.25 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 98.23 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 98.22 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 98.22 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 98.16 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.13 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 98.12 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 98.1 | |
| cd03114 | 148 | ArgK-like The function of this protein family is u | 98.1 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 98.08 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 98.08 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 97.99 | |
| KOG1424|consensus | 562 | 97.99 | ||
| TIGR02475 | 341 | CobW cobalamin biosynthesis protein CobW. A broade | 97.97 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 97.95 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 97.94 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 97.94 | |
| KOG2423|consensus | 572 | 97.91 | ||
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 97.91 | |
| PF06858 | 58 | NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte | 97.9 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 97.9 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.85 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.85 | |
| cd03110 | 179 | Fer4_NifH_child This protein family's function is | 97.84 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 97.84 | |
| KOG2484|consensus | 435 | 97.82 | ||
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 97.81 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 97.81 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 97.81 | |
| cd01983 | 99 | Fer4_NifH The Fer4_NifH superfamily contains a var | 97.79 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 97.78 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 97.78 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 97.77 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 97.77 | |
| COG3523 | 1188 | IcmF Type VI protein secretion system component Va | 97.76 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 97.74 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.73 | |
| KOG3859|consensus | 406 | 97.73 | ||
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.71 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.71 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 97.71 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 97.7 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 97.66 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.66 | |
| cd02038 | 139 | FleN-like FleN is a member of the Fer4_NifH superf | 97.65 | |
| KOG1533|consensus | 290 | 97.63 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 97.63 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.62 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.62 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 97.61 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 97.61 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 97.61 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 97.6 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 97.58 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 97.58 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 97.57 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.56 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 97.56 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 97.56 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.56 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.55 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 97.54 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 97.53 | |
| KOG2485|consensus | 335 | 97.53 | ||
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.53 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 97.53 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 97.52 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 97.52 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 97.52 | |
| PRK10751 | 173 | molybdopterin-guanine dinucleotide biosynthesis pr | 97.52 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 97.52 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 97.52 | |
| cd03111 | 106 | CpaE_like This protein family consists of proteins | 97.52 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 97.52 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.51 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 97.5 | |
| cd04178 | 172 | Nucleostemin_like Nucleostemin-like. Nucleostemin | 97.5 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 97.5 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 97.49 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 97.49 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 97.48 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 97.48 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 97.48 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 97.47 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.45 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 97.45 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 97.45 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 97.45 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 97.45 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 97.44 | |
| KOG0734|consensus | 752 | 97.44 | ||
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 97.44 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 97.44 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 97.43 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 97.42 | |
| KOG0469|consensus | 842 | 97.42 | ||
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 97.42 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 97.42 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.41 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 97.41 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 97.41 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 97.4 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 97.4 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 97.4 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.4 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 97.4 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 97.4 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 97.39 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 97.39 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 97.39 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 97.39 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 97.39 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 97.39 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 97.39 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 97.39 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 97.38 |
| >PLN00223 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=208.64 Aligned_cols=164 Identities=34% Similarity=0.588 Sum_probs=144.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+.++|+++|.+|||||||++++....+..+.||.+.+...++..+..+.+||+||+++++..+..+++++|++|+|+|
T Consensus 14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D 93 (181)
T PLN00223 14 AKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 93 (181)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 36678999999999999999999998888878899999888888889999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++.+++.....++..++......+.|++|++||+|++...+.+++.+.++... ...+.+.+++|||+
T Consensus 94 ~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~------------~~~~~~~~~~~Sa~ 161 (181)
T PLN00223 94 SNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRQRHWYIQSTCAT 161 (181)
T ss_pred CCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCceEEEeccCC
Confidence 999999999988888887665556899999999999988888888888776433 33455678899999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|+|++++|+||.+++
T Consensus 162 ~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 162 SGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998875
|
|
| >PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=208.69 Aligned_cols=174 Identities=43% Similarity=0.725 Sum_probs=161.2
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhh
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP 87 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 87 (194)
|.++++.+....++.+|+++|++||||||+++++.......+.||.+.+...+.+.+..+.+||.+|+..++..|..++.
T Consensus 1 ~~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~ 80 (175)
T PF00025_consen 1 FSSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ 80 (175)
T ss_dssp HHHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT
T ss_pred CHHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc
Confidence 57788888877999999999999999999999999888888999999999999999999999999999999999999999
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC-C
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ-M 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~-~ 166 (194)
++|++|||+|+++.+.+.+....+.+++.+....++|++|++||+|++.....+++...+.... .. .
T Consensus 81 ~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~------------l~~~ 148 (175)
T PF00025_consen 81 NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEK------------LKNK 148 (175)
T ss_dssp TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGG------------TTSS
T ss_pred ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhh------------cccC
Confidence 9999999999999999999999999999987778899999999999999899999999887654 33 6
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.++.|||.+|+|+.+.++||.++|
T Consensus 149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 149 RPWSVFSCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp SCEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred CceEEEeeeccCCcCHHHHHHHHHhcC
Confidence 778999999999999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A .... |
| >cd04149 Arf6 Arf6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=205.58 Aligned_cols=162 Identities=30% Similarity=0.575 Sum_probs=142.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++....+..+.||.+.+...+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 56789999999999999999999988887788899988887888889999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.+...++.+++.....++.|+++++||+|+.+....+++.+.++... .....+.++++||++
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAk~ 154 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCATS 154 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCc------------cCCCcEEEEEeeCCC
Confidence 99999999999998888765456799999999999987777788888775433 333456899999999
Q ss_pred CCChHHHHHHHhhh
Q psy2159 179 RQGFGNGFRWLANY 192 (194)
Q Consensus 179 ~~~v~~l~~~l~~~ 192 (194)
|.|++++|+||.++
T Consensus 155 g~gv~~~~~~l~~~ 168 (168)
T cd04149 155 GDGLYEGLTWLSSN 168 (168)
T ss_pred CCChHHHHHHHhcC
Confidence 99999999999763
|
Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t |
| >PTZ00133 ADP-ribosylation factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=205.03 Aligned_cols=164 Identities=33% Similarity=0.603 Sum_probs=142.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.+..++|+++|++|||||||++++..+.+..+.||.+.+...+...+..+.+||+||+++++..+..+++++|++|+|+|
T Consensus 14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D 93 (182)
T PTZ00133 14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVD 93 (182)
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 45678999999999999999999988888778889998888888888999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++++++.....++.+++......+.|++|++||.|+.+....+++...+.... ...+.+.++++||+
T Consensus 94 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~Sa~ 161 (182)
T PTZ00133 94 SNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHS------------VRQRNWYIQGCCAT 161 (182)
T ss_pred CCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCc------------ccCCcEEEEeeeCC
Confidence 999999999988888887654556789999999999987666777777665432 33445778899999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|+|++++|+||.+.+
T Consensus 162 tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 162 TAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999998764
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=204.13 Aligned_cols=189 Identities=63% Similarity=1.076 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++-++-..+..++...+..+++++|++|||||||++++.+..+..+.||.++....+.+++..+.+||+||+.++...+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~ 81 (190)
T cd00879 2 IFDWFYNVLSSLGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWK 81 (190)
T ss_pred hHHHHHHHHHHhhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 45566778999999999999999999999999999999998888888999999889999999999999999999988889
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++++|++++|+|+++.+++.....++..++......+.|+++++||+|+......+++++.++........ .....+
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 160 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGK-GVSLKV 160 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccc-cccccc
Confidence 9999999999999999988898888888888776555779999999999998777888888888653311111 000111
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.+.+++|||++|+|++++|+||.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhhC
Confidence 123447899999999999999999998864
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=203.81 Aligned_cols=163 Identities=33% Similarity=0.596 Sum_probs=142.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
..+++|+++|++|||||||++++..+.+..+.||.+.....+...+..+.+||+||++++...+..+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 55789999999999999999999877777788899988877888889999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.+++....++..++......+.|++|++||+|+.+..+.+++...++... ...+.+.++++||++
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~ 158 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHS------------IRDRNWYIQPTCATS 158 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccc------------cCCCcEEEEEeeCCC
Confidence 99999999999999987765556799999999999987767777777765433 334567788999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|+|++++|+||.+.+
T Consensus 159 g~gv~e~~~~l~~~~ 173 (175)
T smart00177 159 GDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
|
Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=203.07 Aligned_cols=183 Identities=62% Similarity=1.052 Sum_probs=155.5
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
.||..++..++...+..+|+++|++|||||||++++.+..+..+.||.+++.+.+..++..+.+||+||+..++..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 81 (184)
T smart00178 2 DWFYDILASLGLWNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDY 81 (184)
T ss_pred hHHHHHHHHhccccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 46777777666668899999999999999999999999888777889999888888899999999999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+.++|++++|+|++++.++.....++..+++.....+.|+++++||+|++...+.+++.+.++........ ....
T Consensus 82 ~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~-----~~~~ 156 (184)
T smart00178 82 FPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSK-----GKVG 156 (184)
T ss_pred hCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccc-----cccC
Confidence 99999999999999998898888888888765555689999999999998888889999888654311110 0113
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+.+++|||++|+|++++++||.+++
T Consensus 157 ~~~~~i~~~Sa~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 157 VRPLEVFMCSVVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred CceeEEEEeecccCCChHHHHHHHHhhC
Confidence 4568899999999999999999998764
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd04150 Arf1_5_like Arf1-Arf5-like subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=199.52 Aligned_cols=158 Identities=34% Similarity=0.602 Sum_probs=135.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+||+++|.+|||||||++++....+..+.||.+.+...+......+.+||+||++++...+..+++++|++++|+|+++.
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999888887788999988888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..++......+.|+++++||+|+.+....+++...+.... ...+.+.++++||++|+|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHS------------LRNRNWYIQATCATSGDG 148 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------cCCCCEEEEEeeCCCCCC
Confidence 99999999898887665556789999999999977656666666553322 233456789999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
++++|+||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999975
|
This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=200.44 Aligned_cols=170 Identities=33% Similarity=0.574 Sum_probs=146.2
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
+++...+......+|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++.++..+..+++++
T Consensus 3 ~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04154 3 TIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFEST 82 (173)
T ss_pred hhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCC
Confidence 34556666778899999999999999999999988777788898888888888889999999999999988899999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.++.....++..++......+.|+++++||+|+.+....+++.+.++... .....+
T Consensus 83 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 150 (173)
T cd04154 83 DALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDK------------ISSHHW 150 (173)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccc------------cCCCce
Confidence 99999999999988999888888887665557899999999999987666777777775432 233457
Q ss_pred EEEEeccccCCChHHHHHHHhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+++++||++|.|++++|+++.+
T Consensus 151 ~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 151 RIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEeccCCCCcCHHHHHHHHhc
Confidence 8999999999999999999864
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >KOG0092|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=196.62 Aligned_cols=157 Identities=20% Similarity=0.352 Sum_probs=141.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+|++++|..++|||||+-|+..+.|.. ..||+|... .++..++ .++.||||+|+++|+++-++||++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 578899999999999999999999999986 588888764 4556666 78999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|||+++.+||...+.|+.++..+.. ++.-+.++|||+|+.+ .++.+|.....+..+ ..|
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~g-----------------ll~ 144 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYAESQG-----------------LLF 144 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHHHhcC-----------------CEE
Confidence 99999999999999999999976644 7777788999999977 788999999998766 889
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||+|.||+++|..|.+.+
T Consensus 145 ~ETSAKTg~Nv~~if~~Ia~~l 166 (200)
T KOG0092|consen 145 FETSAKTGENVNEIFQAIAEKL 166 (200)
T ss_pred EEEecccccCHHHHHHHHHHhc
Confidence 9999999999999999999876
|
|
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=197.97 Aligned_cols=160 Identities=33% Similarity=0.571 Sum_probs=138.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|.+|||||||++++.+..+..+.||.+.....+++++..+.+||+||+.++...+..+++++|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 58899999999999999999988878889998888888888999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....|+..++......+.|+++++||+|+.+....+++.+.++... ....+.+.+++|||++|.|+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~Sa~~g~gv 149 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHK-----------LCCGRSWYIQGCDARSGMGL 149 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCcc-----------ccCCCcEEEEeCcCCCCCCH
Confidence 9999999999998765556789999999999987777788777764321 01123468999999999999
Q ss_pred HHHHHHHhhhc
Q psy2159 183 GNGFRWLANYI 193 (194)
Q Consensus 183 ~~l~~~l~~~i 193 (194)
+++|+||.+.+
T Consensus 150 ~~~f~~l~~~~ 160 (169)
T cd04158 150 YEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >KOG0084|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=196.88 Aligned_cols=158 Identities=23% Similarity=0.372 Sum_probs=138.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+-+||+++|.+|+|||+|+.+|....|. .+..|+|++. .+++++| .++++|||+||++++.....+|+++++|
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 456789999999999999999999999998 6888988874 5667776 7899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|||+++.+||.++..|+.++..+ ...+.|.++|+||+|+.+ ..+.++.+....... ++
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~-----------------~~ 147 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELG-----------------IP 147 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcC-----------------Cc
Confidence 9999999999999999999999665 346689999999999977 566777777776644 55
Q ss_pred -EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 -LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 -~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++|||++.||++.|..|...+
T Consensus 148 ~f~ETSAK~~~NVe~~F~~la~~l 171 (205)
T KOG0084|consen 148 IFLETSAKDSTNVEDAFLTLAKEL 171 (205)
T ss_pred ceeecccCCccCHHHHHHHHHHHH
Confidence 99999999999999999987654
|
|
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=194.70 Aligned_cols=161 Identities=32% Similarity=0.597 Sum_probs=139.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
....+|+++|++|+|||||++++....+..+.||.+.+...+..++..+.+||+||+.++...+..+++++|++++|+|+
T Consensus 13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 34689999999999999999999988888888999999888888999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++++++.....++..++.+....+.|+++++||+|+....+.+++.+.+.... .....+++++|||++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~------------~~~~~~~~~~~SA~~ 160 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTS------------IRDHTWHIQGCCALT 160 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceEEEecccCC
Confidence 99988988888888887765556799999999999987666777777665322 223447899999999
Q ss_pred CCChHHHHHHHhh
Q psy2159 179 RQGFGNGFRWLAN 191 (194)
Q Consensus 179 ~~~v~~l~~~l~~ 191 (194)
|+|++++|++|.+
T Consensus 161 g~gi~e~~~~l~~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >KOG0094|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=190.98 Aligned_cols=161 Identities=24% Similarity=0.314 Sum_probs=139.8
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+...+..|++++|..++||||||+++..+.|. .|.+|+|.+ .+++.+.+ +.+++|||+||++++.+.+.|++++.
T Consensus 17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~ 96 (221)
T KOG0094|consen 17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS 96 (221)
T ss_pred CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence 33446689999999999999999999999998 688899887 46677766 78999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|||+++..||.+...|+.+.+......+.-+++|+||.||.+ ....+|-.....+++
T Consensus 97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~----------------- 159 (221)
T KOG0094|consen 97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELN----------------- 159 (221)
T ss_pred EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhC-----------------
Confidence 9999999999999999999999999887666788889999999987 455556555555544
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..|+++||+.|.||.++|..|...+
T Consensus 160 a~f~etsak~g~NVk~lFrrIaa~l 184 (221)
T KOG0094|consen 160 AEFIETSAKAGENVKQLFRRIAAAL 184 (221)
T ss_pred cEEEEecccCCCCHHHHHHHHHHhc
Confidence 6899999999999999999987654
|
|
| >KOG0070|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=191.60 Aligned_cols=177 Identities=33% Similarity=0.566 Sum_probs=163.5
Q ss_pred CccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
|+++++.+-. .-....+.+|+++|..++||||++.++..+++..+.||+|.+.+++++.+..+++||.+|+..++.
T Consensus 1 MG~~~s~~~~----~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~ 76 (181)
T KOG0070|consen 1 MGLIFSKLFS----GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRP 76 (181)
T ss_pred Ccchhhhhhh----hccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCccccc
Confidence 5555554444 225688999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCc
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.|..|+++.+++|||+|++|.+.+.+.+..+..++.+....+.|+++.+||.|++.+.+..|+.+.+....
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~--------- 147 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHS--------- 147 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhc---------
Confidence 99999999999999999999999999999999999998888999999999999999999999999998877
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.|.+..|+|.+|+|+.|.++|+.+.+
T Consensus 148 ---l~~~~w~iq~~~a~~G~GL~egl~wl~~~~ 177 (181)
T KOG0070|consen 148 ---LRSRNWHIQSTCAISGEGLYEGLDWLSNNL 177 (181)
T ss_pred ---cCCCCcEEeeccccccccHHHHHHHHHHHH
Confidence 777899999999999999999999998876
|
|
| >cd04121 Rab40 Rab40 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-32 Score=195.66 Aligned_cols=156 Identities=18% Similarity=0.283 Sum_probs=132.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|+|||||+.++..+.+. .+.+|.+... ..+..++ ..+.+||++|++++..++..+++++|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35689999999999999999999998876 4555665543 4456666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|||++++.+|+.+..|+.++..+. ++.|++||+||+|+.. ..+.++...+.+... +++
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~-----------------~~~ 144 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAERNG-----------------MTF 144 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999999999986543 6899999999999865 556777777765433 789
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||++|.||+++|+++.+.+
T Consensus 145 ~e~SAk~g~~V~~~F~~l~~~i 166 (189)
T cd04121 145 FEVSPLCNFNITESFTELARIV 166 (189)
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d |
| >cd04120 Rab12 Rab12 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=197.21 Aligned_cols=155 Identities=17% Similarity=0.248 Sum_probs=127.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.|+++|..|||||||++++..+.|. .+.+|.+... ..+.+++ ..+.+||++|++++..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 46899999999999999999999886 4667776543 4677776 78899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|+.+..|+..+.. ....+.|+++|+||+|+.. ....++..+..+.. ..+.|++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~-~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~----------------~~~~~~et 143 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDK-YASEDAELLLVGNKLDCETDREISRQQGEKFAQQI----------------TGMRFCEA 143 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHH-hCCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCEEEEe
Confidence 99999999999988876543 3456799999999999864 34444444444221 12679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|+++.+.+
T Consensus 144 SAktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 144 SAKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic |
| >KOG0073|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=182.28 Aligned_cols=173 Identities=31% Similarity=0.558 Sum_probs=157.6
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
-+++.......++++|+++|..||||||+++++.+.......||.+.++.+..+++..+++||.+||...++.|.+|+..
T Consensus 4 lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfes 83 (185)
T KOG0073|consen 4 LSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFES 83 (185)
T ss_pred HHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhhc
Confidence 34555555667899999999999999999999999998899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
.|++|+|+|++++.++++....+..++......+.|+++++||.|++.+...+++...++... . +..
T Consensus 84 tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~------------l~ks~ 151 (185)
T KOG0073|consen 84 TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEE------------LAKSH 151 (185)
T ss_pred cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHH------------hcccc
Confidence 999999999999999999999999999887788899999999999998899999987776644 4 667
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|+++.|||.+|+++.+-++|+.+.+
T Consensus 152 ~~~l~~cs~~tge~l~~gidWL~~~l 177 (185)
T KOG0073|consen 152 HWRLVKCSAVTGEDLLEGIDWLCDDL 177 (185)
T ss_pred CceEEEEeccccccHHHHHHHHHHHH
Confidence 79999999999999999999998764
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-32 Score=188.73 Aligned_cols=157 Identities=36% Similarity=0.652 Sum_probs=131.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|++++|||||++++....+..+.||.+.+...++..+..+.+||+||+.++...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998888877888988888888888899999999999999999999999999999999999987
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....++..+++.....++|+++++||+|+.+....+++...+.... .....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSE------------LKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccc------------cCCCcEEEEEeeccCCCCH
Confidence 7777777777776654456799999999999977555566655553221 2233468999999999999
Q ss_pred HHHHHHHhh
Q psy2159 183 GNGFRWLAN 191 (194)
Q Consensus 183 ~~l~~~l~~ 191 (194)
+++|++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999976
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-32 Score=188.93 Aligned_cols=158 Identities=33% Similarity=0.635 Sum_probs=131.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
+|+++|++|||||||++++.+..+ ..+.||.+.....+..++..+.+||+||+.++...+..+++++|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 588999999999999999998753 367889888877777788999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 101 RSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+.++.....++..++.... ..+.|+++++||+|+.+....+++...++... .....+.++++||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~------------~~~~~~~~~~~Sa~~ 148 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLEN------------IKDKPWHIFASNALT 148 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCcc------------ccCceEEEEEeeCCC
Confidence 9888888888888766432 25799999999999987656666666554321 123346799999999
Q ss_pred CCChHHHHHHHhhh
Q psy2159 179 RQGFGNGFRWLANY 192 (194)
Q Consensus 179 ~~~v~~l~~~l~~~ 192 (194)
|.|++++|+||.++
T Consensus 149 g~gv~~~~~~l~~~ 162 (162)
T cd04157 149 GEGLDEGVQWLQAQ 162 (162)
T ss_pred CCchHHHHHHHhcC
Confidence 99999999999764
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=191.11 Aligned_cols=156 Identities=19% Similarity=0.314 Sum_probs=128.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++|+++|.+|||||||++++..+.+. .+.||.+.... .+..++ ..+.+||+||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 469999999999999999999999887 57778876543 456666 67999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+|..+..|+..+......++.|+++|+||+|+.+ ..+.++..+..+.. .+++++|
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~-----------------~~~~~e~ 144 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREF-----------------NCPFFET 144 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHh-----------------CCEEEEE
Confidence 9999999999998776665544446799999999999865 34445554444332 2789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|++|.+.+
T Consensus 145 Sa~~~~~v~~~f~~l~~~~ 163 (172)
T cd04141 145 SAALRHYIDDAFHGLVREI 163 (172)
T ss_pred ecCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign |
| >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=188.82 Aligned_cols=160 Identities=32% Similarity=0.507 Sum_probs=136.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
.|+++|++|||||||++++.+.....+.||.+.+...+..++..+.+||+||+.+++..+..+++++|++++|+|+++..
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 47899999999999999999874447889999988888899999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC---
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR--- 179 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--- 179 (194)
++.....++..++......++|+++++||+|+....+..++.+.+..... .......+.+++|||++|
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~---------~~~~~~~~~~~~~Sa~~g~~~ 151 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKL---------VNENKSLCHIEPCSAIEGLGK 151 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccc---------cCCCCceEEEEEeEceeCCCC
Confidence 99999999999987655568999999999999887777777777654320 001123478999999998
Q ss_pred ---CChHHHHHHHhh
Q psy2159 180 ---QGFGNGFRWLAN 191 (194)
Q Consensus 180 ---~~v~~l~~~l~~ 191 (194)
.|+++.|+||.+
T Consensus 152 ~~~~g~~~~~~wl~~ 166 (167)
T cd04161 152 KIDPSIVEGLRWLLA 166 (167)
T ss_pred ccccCHHHHHHHHhc
Confidence 899999999975
|
Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. |
| >cd04133 Rop_like Rop subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=191.62 Aligned_cols=153 Identities=19% Similarity=0.274 Sum_probs=127.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+|++++|.+|+|||||+.++..+.|. .+.||++.... .+..++ .++.+|||+|+++++.++..+++++|++++|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 58999999999999999999999997 68888876543 345555 789999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC------------CCHHHHHhhhcccCccCCCccCccccc
Q psy2159 98 ASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA------------ASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++++||..+ ..|+..+.... ++.|+++|+||+|+.+. ...++..+..+...
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~------------- 146 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG------------- 146 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC-------------
Confidence 9999999998 57888775543 57999999999998652 34455555543322
Q ss_pred CCcce-EEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPM-ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. .|++|||++|.||+++|+.+.+.+
T Consensus 147 ----~~~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 147 ----AAAYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred ----CCEEEECCCCcccCHHHHHHHHHHHH
Confidence 4 699999999999999999998753
|
The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, |
| >cd04156 ARLTS1 ARLTS1 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=186.18 Aligned_cols=158 Identities=34% Similarity=0.590 Sum_probs=132.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC-EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+|+++|++|||||||++++.+..+..+.||.+.+...+..++ ..+.+||+||+..+...+..++.++|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 588999999999999999999988877888888777777654 7899999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..+++.....+.|+++++||+|+......+++...++... ......+++++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKK-----------YCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcc-----------cCCCCcEEEEecccccCCC
Confidence 88999988888887765556899999999999977666677766654211 0112346899999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
++++|++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999875
|
ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h |
| >KOG0071|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=173.88 Aligned_cols=165 Identities=32% Similarity=0.582 Sum_probs=157.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...++.+|+.+|..++||||++..+...+...+.||+|++.+++.+.+.++.+||.+|++..+..|++|+.+..++|||+
T Consensus 13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~ 92 (180)
T KOG0071|consen 13 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 92 (180)
T ss_pred hCcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEE
Confidence 46779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+.+.+..++.+..+..++.+....+.|++|.+||.|++.+.++.|+.+.++... ...+.|.+.++||
T Consensus 93 Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~------------~r~~~W~vqp~~a 160 (180)
T KOG0071|consen 93 DSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER------------IRDRNWYVQPSCA 160 (180)
T ss_pred eccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc------------ccCCccEeecccc
Confidence 9999999999999999999998889999999999999999999999999999877 7888899999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
.+|+|+.|-|.|+.+.+
T Consensus 161 ~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 161 LSGDGLKEGLSWLSNNL 177 (180)
T ss_pred ccchhHHHHHHHHHhhc
Confidence 99999999999998865
|
|
| >cd04175 Rap1 Rap1 subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=187.56 Aligned_cols=156 Identities=19% Similarity=0.278 Sum_probs=128.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++||+++|.+|||||||++++..+.+. .+.||.+... ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 468999999999999999999988775 4666766543 3555665 56789999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++..+|+....|+..+.......+.|+++++||+|+... ...++.....+... ++++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWG-----------------CAFLET 143 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhC-----------------CEEEEe
Confidence 99999999999999999887655678999999999999652 23334333333222 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+++
T Consensus 144 Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 144 SAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999876
|
The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-31 Score=186.50 Aligned_cols=168 Identities=30% Similarity=0.575 Sum_probs=142.4
Q ss_pred HHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 13 LRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
++.....+..+++++|++|||||||++++.+..+..+.+|.+.+...+..++..+.+||+||+..+...+..+++.+|++
T Consensus 6 ~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i 85 (173)
T cd04155 6 RKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENTDCL 85 (173)
T ss_pred HHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 33334456899999999999999999999998887788888888888889999999999999998888888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|.++..++.....++..+++.....++|+++++||+|+......+++.+.++... ...+.++++
T Consensus 86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~------------~~~~~~~~~ 153 (173)
T cd04155 86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHD------------LRDRTWHIQ 153 (173)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcc------------cCCCeEEEE
Confidence 99999999888888888888887765556799999999999977666677776665433 344557789
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++||++|+|++++|+||.++
T Consensus 154 ~~Sa~~~~gi~~~~~~l~~~ 173 (173)
T cd04155 154 ACSAKTGEGLQEGMNWVCKN 173 (173)
T ss_pred EeECCCCCCHHHHHHHHhcC
Confidence 99999999999999999864
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=190.48 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+..+||+++|.+|+|||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++..+++.+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45679999999999999999999999886 5788887654 3445555 689999999999999999999999999999
Q ss_pred EEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|||++++.+|..+ ..|+..+... .++.|+++|+||+|+.+. ++.++..+..+...
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~-------- 152 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG-------- 152 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC--------
Confidence 9999999999998 6777777554 267999999999998542 44445555443322
Q ss_pred cccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
..+|++|||++|.| |+++|+.+.+.
T Consensus 153 --------~~~~~E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 153 --------AATYIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred --------CCEEEECCcCCCCCCHHHHHHHHHHH
Confidence 13799999999998 99999998874
|
Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-31 Score=184.39 Aligned_cols=158 Identities=35% Similarity=0.635 Sum_probs=139.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|++|||||||++++.+..+..+.+|.+.+...+.+.+..+.+||+||+..+...+..+++.+|++++|+|++++.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998778899999999889999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....++..+.......+.|+++++||+|+......+++.+.++... .....++++++||++|.|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEK------------ILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhh------------ccCCcEEEEEeeCCCCCCH
Confidence 9999999998887766567899999999999987666777777765532 2334578999999999999
Q ss_pred HHHHHHHhhh
Q psy2159 183 GNGFRWLANY 192 (194)
Q Consensus 183 ~~l~~~l~~~ 192 (194)
+++|++|.++
T Consensus 149 ~~~~~~l~~~ 158 (158)
T cd00878 149 DEGLDWLLQQ 158 (158)
T ss_pred HHHHHHHhhC
Confidence 9999999764
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >KOG0078|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=187.77 Aligned_cols=158 Identities=23% Similarity=0.343 Sum_probs=139.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....++++++|.+|||||+++.++..+.|. .+..|+|.+. .++.+++ ..+++|||.||++++.+...|+++++++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 446789999999999999999999999987 6777777764 5777777 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|||++++.||+++..|+..+-++ ...+.|.++||||+|+.. .++.+..++....++ +.
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G-----------------~~ 150 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYG-----------------IK 150 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhC-----------------Ce
Confidence 9999999999999999977777554 456899999999999876 677788888887766 99
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++||++|.||+++|-.|.+.+
T Consensus 151 F~EtSAk~~~NI~eaF~~La~~i 173 (207)
T KOG0078|consen 151 FFETSAKTNFNIEEAFLSLARDI 173 (207)
T ss_pred EEEccccCCCCHHHHHHHHHHHH
Confidence 99999999999999999987754
|
|
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.9e-31 Score=185.61 Aligned_cols=155 Identities=19% Similarity=0.287 Sum_probs=126.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++....+. .+.||.+.. ...+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999988876 456666533 34466666 568899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.+++....|+..+.......+.|+++++||+|+.+ ....++.....+... .+++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 144 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG-----------------CPFYETS 144 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC-----------------CeEEEec
Confidence 999999999999988887765557899999999999865 223333333332211 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+.+
T Consensus 145 a~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 145 AKSKINVDEVFADLVRQI 162 (163)
T ss_pred CCCCCCHHHHHHHHHHhc
Confidence 999999999999998865
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-31 Score=186.00 Aligned_cols=160 Identities=37% Similarity=0.620 Sum_probs=134.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC-------CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT-------AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+|+++|++|||||||++++.+... ..+.+|.+.+...+.+++..+.+||+||+..+...+..+++++|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 588999999999999999976432 2467788888888999999999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++++++.....++..+++.....+.|+++++||+|+......+++.+.++... .......++++++|
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~S 150 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKA----------EEIGRRDCLVLPVS 150 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhcccc----------ccccCCceEEEEee
Confidence 99999888888888888887765557899999999999988777777777765532 01223457899999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|+|++++++||.++
T Consensus 151 a~~g~gv~e~~~~l~~~ 167 (167)
T cd04160 151 ALEGTGVREGIEWLVER 167 (167)
T ss_pred CCCCcCHHHHHHHHhcC
Confidence 99999999999999763
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd04126 Rab20 Rab20 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4e-31 Score=193.30 Aligned_cols=167 Identities=21% Similarity=0.224 Sum_probs=131.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+||+++|.+|+|||||++++....+..+.+|++............+.+||++|++.+..++..+++++|++++|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 48999999999999999999999998788888887766666778899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---------------------CCCHHHHHhhhcccCccCCCccCc
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFD---------------------AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---------------------~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+|..+..||..+... ...+.|+++|+||+|+.+ ....++...+.+...... ..
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~----~~ 155 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYK----ML 155 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccc----cc
Confidence 9999999999888754 346789999999999854 233445444443321000 00
Q ss_pred cccc-CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REIL-QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~-~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++. .....+|++|||++|.||+++|+++.+.+
T Consensus 156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred cccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 0000 01125799999999999999999998754
|
Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo |
| >cd01875 RhoG RhoG subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-31 Score=192.18 Aligned_cols=169 Identities=18% Similarity=0.295 Sum_probs=124.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+||+++|.+|||||||+.++..+.+. .+.||.+.... .+..++ ..+.+|||+|+++++.++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3579999999999999999999999985 67888876543 344555 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
||++++.+|+.+.. |...+... .++.|+++|+||.|+.+... .+++.+ .........++...+. ....+++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~-~~~~~v~~~~~~~~a~--~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKE-QGQAPITPQQGGALAK--QIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhh-ccCCCCCHHHHHHHHH--HcCCcEEEE
Confidence 99999999999975 55555432 35799999999999965321 111111 1000000000111111 112368999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|+++.+.+
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin |
| >cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-31 Score=185.06 Aligned_cols=156 Identities=30% Similarity=0.487 Sum_probs=131.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
.|+++|++|||||||++++.+..+. .+.||.+.....+..++..+.+||+||+++++..+..+++++|++++|+|.++.
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 3789999999999999999988765 678898887777777889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc---
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK--- 178 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--- 178 (194)
.++.....|+..+.... +++|+++|+||+|+......+++.+.++... -.....+.+++|||++
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~Sa~~~~s 147 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEP-----------IARGRRWILQGTSLDDDGS 147 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChh-----------hcCCCceEEEEeeecCCCC
Confidence 88999998888886543 6899999999999987766777666654322 0123457889988888
Q ss_pred ---CCChHHHHHHHhh
Q psy2159 179 ---RQGFGNGFRWLAN 191 (194)
Q Consensus 179 ---~~~v~~l~~~l~~ 191 (194)
++||+++|+.++.
T Consensus 148 ~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 148 PSRMEAVKDLLSQLIN 163 (164)
T ss_pred hhHHHHHHHHHHHHhc
Confidence 9999999998875
|
Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date. |
| >cd04127 Rab27A Rab27a subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.6e-31 Score=188.33 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=130.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeC------------CEEEEEEEcCCCccchhhHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMG------------DIVFTTHDLGGHVQARRVWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~d~~g~~~~~~~~~~ 84 (194)
+.+||+++|++|||||||++++....+. .+.+|.+.+.. .+.+. ...+.+||+||++++...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4579999999999999999999998876 56777776543 33332 278999999999999999999
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++++|++++|+|++++++|..+..|+..+......++.|+++|+||+|+.+ ....++.....+...
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~----------- 151 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYG----------- 151 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcC-----------
Confidence 9999999999999999999999999998887655556789999999999865 345556655554433
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 152 ------~~~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 152 ------IPYFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred ------CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998753
|
The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.5e-31 Score=183.26 Aligned_cols=155 Identities=20% Similarity=0.320 Sum_probs=127.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.+..+. .+.||.+... ..+..++ ..+.+||++|++++..++..+++++|++++|+|
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~ 81 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFA 81 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEE
Confidence 58999999999999999999998875 5666666543 3455555 568899999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
+++..++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++++||
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~Sa 144 (162)
T cd04138 82 INSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG-----------------IPYIETSA 144 (162)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC-----------------CeEEEecC
Confidence 999999999988888887765557899999999999865 334445555443322 67999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+++.+.+
T Consensus 145 ~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 145 KTRQGVEEAFYTLVREI 161 (162)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999999875
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >KOG0080|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-31 Score=179.21 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=141.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccC-CCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPT-LHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t-~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+||+++|.+|+|||||+.++..+.|.+..|+ +|.+ .+.+..++ .++.+|||+||++++.+.+.||+++-++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34568999999999999999999999999876664 7775 45666666 7999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|+|++..++|..+..|+.++-.+...+++-.++|+||+|.. +.++.+|-.++..+.. .-
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~-----------------~L 150 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHR-----------------CL 150 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhC-----------------cE
Confidence 9999999999999999999999888888888899999999987 3678888888887766 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|++|||++.+||+-.|+.++++|
T Consensus 151 FiE~SAkt~~~V~~~FeelveKI 173 (209)
T KOG0080|consen 151 FIECSAKTRENVQCCFEELVEKI 173 (209)
T ss_pred EEEcchhhhccHHHHHHHHHHHH
Confidence 99999999999999999998865
|
|
| >cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.3e-31 Score=186.23 Aligned_cols=153 Identities=21% Similarity=0.338 Sum_probs=124.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe--C--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM--G--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~--~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++....+. .+.+|.+.......+ + ...+.+||++|++.+...+..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 48999999999999999999988765 677888776654433 2 378999999999998888888899999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++++++..+..|+..+.... .+.|+++++||+|+.......+..+..+ .....++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~~~~~~~~~~~~~-----------------~~~~~~~e~Sa 141 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKDRKVKAKQITFHR-----------------KKNLQYYEISA 141 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhcccccCCHHHHHHHH-----------------HcCCEEEEEeC
Confidence 9999999999999988887654 3899999999999875332223222222 22377999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+|++++|++|.+++
T Consensus 142 ~~~~~v~~~f~~l~~~~ 158 (166)
T cd00877 142 KSNYNFEKPFLWLARKL 158 (166)
T ss_pred CCCCChHHHHHHHHHHH
Confidence 99999999999998765
|
Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is |
| >cd04152 Arl4_Arl7 Arl4/Arl7 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.3e-30 Score=186.49 Aligned_cols=163 Identities=31% Similarity=0.495 Sum_probs=132.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEe-----CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM-----GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++....+..+.||.+.+...... .+..+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999998887677888776655444 34789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+|++++.++.....++..+.......++|+++++||+|+......+++...+.... ......++++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 150 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHE-----------LSASTPWHVQPA 150 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccc-----------cCCCCceEEEEe
Confidence 999999888888888888777654456799999999999977666677666554211 011123678999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|+|+++++++|.+.+
T Consensus 151 SA~~~~gi~~l~~~l~~~l 169 (183)
T cd04152 151 CAIIGEGLQEGLEKLYEMI 169 (183)
T ss_pred ecccCCCHHHHHHHHHHHH
Confidence 9999999999999998765
|
Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. |
| >cd04122 Rab14 Rab14 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-31 Score=184.39 Aligned_cols=154 Identities=20% Similarity=0.288 Sum_probs=127.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++....+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999999998876 45567666543 345555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ..++.|+++|+||+|+.. ....++.....+... +++++|
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 144 (166)
T cd04122 83 DITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENG-----------------LLFLEC 144 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999998887553 336789999999999865 344556666554322 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 145 Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 145 SAKTGENVEDAFLETAKKI 163 (166)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT |
| >PTZ00369 Ras-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-31 Score=189.30 Aligned_cols=158 Identities=19% Similarity=0.283 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.+||+++|.+|||||||++++....+. .+.||.+.... .+..++ ..+.+|||||++++..++..+++++|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 35689999999999999999999998876 56677766543 445555 578899999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++++|+.+..|+..+.......+.|+++++||+|+.+. ...++.....+... ++++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~~~ 145 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFG-----------------IPFL 145 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhC-----------------CEEE
Confidence 9999999999999998888876655568999999999998653 34444444443322 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 146 ETSAKQRVNVDEAFYELVREI 166 (189)
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >cd04131 Rnd Rnd subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-31 Score=186.71 Aligned_cols=153 Identities=20% Similarity=0.237 Sum_probs=123.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|+|||||++++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++..+.+.+++++|++++|||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfd 81 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFD 81 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEE
Confidence 68999999999999999999999886 6778876654 2445555 689999999999999999999999999999999
Q ss_pred CCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccCccc
Q psy2159 98 ASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 98 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++++||+.+ ..|+..+.... ++.|+++|+||+|+.++ +..++..+..+...
T Consensus 82 it~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~----------- 148 (178)
T cd04131 82 ISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG----------- 148 (178)
T ss_pred CCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC-----------
Confidence 9999999996 67777775543 67999999999998542 33444444443322
Q ss_pred ccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
...|++|||++|++ |+++|+.+.+.
T Consensus 149 -----~~~~~E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 149 -----AEIYLECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred -----CCEEEECccCcCCcCHHHHHHHHHHH
Confidence 13799999999995 99999998873
|
The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01874 Cdc42 Cdc42 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=188.36 Aligned_cols=164 Identities=19% Similarity=0.272 Sum_probs=123.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|.+|+|||||++++..+.+. .+.||.+.... .+..++ ..+.+||++|++++...+..+++++|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 58999999999999999999999885 68888877654 556666 688999999999999999889999999999999
Q ss_pred CCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC---ccCCCccCcccccCCcceEEEE
Q psy2159 98 ASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG---LTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+.. +..+.+.... ....++.... .....+.|++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~---~~~~~l~~~~~~~v~~~~~~~~a--~~~~~~~~~e 154 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDP---STIEKLAKNKQKPITPETGEKLA--RDLKAVKYVE 154 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhCh---hhHHHhhhccCCCcCHHHHHHHH--HHhCCcEEEE
Confidence 999999999975 55555433 2579999999999986531 1111221110 0000000011 1122378999
Q ss_pred eccccCCChHHHHHHHhhh
Q psy2159 174 CSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~ 192 (194)
|||++|.|++++|+.+.+.
T Consensus 155 ~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 155 CSALTQKGLKNVFDEAILA 173 (175)
T ss_pred ecCCCCCCHHHHHHHHHHH
Confidence 9999999999999998864
|
Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi |
| >cd04107 Rab32_Rab38 Rab38/Rab32 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=189.30 Aligned_cols=156 Identities=19% Similarity=0.237 Sum_probs=129.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||++++.+..+. .+.||.+.+. ..+..+ + ..+.+||+||++++..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 48999999999999999999998876 5677877653 345555 3 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 96 IDASDRSRFPESKYELDNLLAD---DALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|++++++|..+..|+..+... ....+.|+++|+||+|+. .....+++.+..+... ...
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~----------------~~~ 144 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENG----------------FIG 144 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcC----------------Cce
Confidence 9999999999999888776543 223678999999999997 4566667766664321 257
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~e~Sak~~~~v~e~f~~l~~~l 167 (201)
T cd04107 145 WFETSAKEGINIEEAMRFLVKNI 167 (201)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04176 Rap2 Rap2 subgroup | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=182.32 Aligned_cols=157 Identities=18% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++|+++|.+|+|||||++++..+++. .+.+|.+. ....+..++ ..+.+||+||++++..++..+++++|++++|+
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 368999999999999999999998886 45555542 234566666 46889999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+|..+..|+..+.......++|+++|+||+|+.+ ....++........ ..+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~~ 143 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEW-----------------GCPFMET 143 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHh-----------------CCEEEEe
Confidence 9999999999999988887765557899999999999854 22333333332221 2579999
Q ss_pred ccccCCChHHHHHHHhhhcC
Q psy2159 175 SVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i~ 194 (194)
||++|.|++++|+++.+.++
T Consensus 144 Sa~~~~~v~~l~~~l~~~l~ 163 (163)
T cd04176 144 SAKSKTMVNELFAEIVRQMN 163 (163)
T ss_pred cCCCCCCHHHHHHHHHHhcC
Confidence 99999999999999998763
|
The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=183.00 Aligned_cols=155 Identities=23% Similarity=0.378 Sum_probs=128.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+.++. .+.||.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999998876 6777777654 3455554 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCC----CCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 97 DASDRSRFPESKYELDNLLADDAL----TDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~----~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+++++++.....|+..+...... .+.|+++|+||+|+.+ ....++......... .+
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 143 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG-----------------FK 143 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC-----------------Ce
Confidence 999999999999998888765432 5799999999999863 345555555543322 67
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 144 YFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=190.95 Aligned_cols=154 Identities=21% Similarity=0.249 Sum_probs=126.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+||+++|.+|||||||++++....|. .+.||++.... .+..++ ..+.+|||+|++++..+++.+++++|++++|
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 4679999999999999999999999887 67788876543 345555 7899999999999999999999999999999
Q ss_pred EECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------------CCCHHHHHhhhcccCccCCCccCc
Q psy2159 96 IDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 96 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~--------------~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
||++++.+|... ..|+..+.... ++.|+++|+||+|+.. .++.++..++.+...
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~--------- 160 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG--------- 160 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC---------
Confidence 999999999985 67777775532 5789999999999853 244455555554433
Q ss_pred ccccCCcce-EEEEeccccCC-ChHHHHHHHhhh
Q psy2159 161 REILQMRPM-ELFMCSVLKRQ-GFGNGFRWLANY 192 (194)
Q Consensus 161 ~~~~~~~~~-~~~~~Sa~~~~-~v~~l~~~l~~~ 192 (194)
. .|++|||++|+ ||+++|+.+...
T Consensus 161 --------~~~~~EtSAktg~~~V~e~F~~~~~~ 186 (232)
T cd04174 161 --------AEVYLECSAFTSEKSIHSIFRSASLL 186 (232)
T ss_pred --------CCEEEEccCCcCCcCHHHHHHHHHHH
Confidence 4 69999999998 899999998765
|
Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >PLN03071 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.6e-31 Score=191.98 Aligned_cols=155 Identities=20% Similarity=0.305 Sum_probs=128.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEE--eC--CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELS--MG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~--~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|||||||++++..+.+. .+.+|.+.+..... .+ ...+.+||++|++++..++..+++++|+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67789999999999999999999988886 67888887765443 33 379999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|||++++.+|..+..|+..+... .++.|+++|+||+|+... ...+++ ..... ..+.++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~-----------------~~~~~~ 150 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-----------------KNLQYY 150 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH-HHHHh-----------------cCCEEE
Confidence 999999999999999998888654 367999999999998652 233333 22221 226799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.|++++|++|.+.+
T Consensus 151 e~SAk~~~~i~~~f~~l~~~~ 171 (219)
T PLN03071 151 EISAKSNYNFEKPFLYLARKL 171 (219)
T ss_pred EcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
|
| >cd01871 Rac1_like Rac1-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=184.28 Aligned_cols=168 Identities=16% Similarity=0.269 Sum_probs=121.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++|++++|.+|||||||+.++..+.+. .+.||.+... ..+..++ ..+.+|||+|++++...+..+++++|++++||
T Consensus 1 ~~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 1 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred CeEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 368999999999999999999998875 6777776543 2445555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC-CHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+.. |+..+... .++.|+++|+||+|+.+.. ..+.+..... ......++....+ .....++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~-~~v~~~~~~~~~~--~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKL-TPITYPQGLAMAK--EIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccC-CCCCHHHHHHHHH--HcCCcEEEEe
Confidence 9999999999975 55555443 3579999999999986421 1111111100 0000000001111 1122489999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|+|++++|+.+.+.+
T Consensus 156 Sa~~~~~i~~~f~~l~~~~ 174 (174)
T cd01871 156 SALTQKGLKTVFDEAIRAV 174 (174)
T ss_pred cccccCCHHHHHHHHHHhC
Confidence 9999999999999998753
|
The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti |
| >cd04117 Rab15 Rab15 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-30 Score=181.14 Aligned_cols=153 Identities=19% Similarity=0.326 Sum_probs=126.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++|+++|++|+|||||++++....+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..+++++|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 47999999999999999999998886 5678887654 4566666 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ...+.|+++|+||.|+.. ....++.....+... .++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 142 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG-----------------MDFFET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999988877654 234789999999999865 234445444443322 578999
Q ss_pred ccccCCChHHHHHHHhhh
Q psy2159 175 SVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~ 192 (194)
||++|.|++++|++|.+.
T Consensus 143 Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 143 SACTNSNIKESFTRLTEL 160 (161)
T ss_pred eCCCCCCHHHHHHHHHhh
Confidence 999999999999999875
|
Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to |
| >KOG0394|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-31 Score=179.77 Aligned_cols=158 Identities=21% Similarity=0.323 Sum_probs=136.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+||+++|.+|+|||||+|++...+|. ++..|+|... +.+..++ ..+++|||+||++++++...+|+++|+.+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv 86 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV 86 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence 34579999999999999999999999998 7888988864 4555566 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+|+|++++.||+.+..|-.+++.+.. ...-|+||+|||+|+.. ..+......++. ..
T Consensus 87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~----------------s~ 150 (210)
T KOG0394|consen 87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCK----------------SK 150 (210)
T ss_pred EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHH----------------hc
Confidence 99999999999999999999998744 34479999999999855 355566677774 34
Q ss_pred cceEEEEeccccCCChHHHHHHHhhh
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++||++|||...||+++|+.+.+.
T Consensus 151 gnipyfEtSAK~~~NV~~AFe~ia~~ 176 (210)
T KOG0394|consen 151 GNIPYFETSAKEATNVDEAFEEIARR 176 (210)
T ss_pred CCceeEEecccccccHHHHHHHHHHH
Confidence 46899999999999999999998764
|
|
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=181.18 Aligned_cols=156 Identities=23% Similarity=0.337 Sum_probs=129.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
...||+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 3479999999999999999999998876 5677777654 3455565 578999999999999988899999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.+|..+..|+..+... ...+.|+++++||+|+.+ ....++.....+... .+++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 143 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYG-----------------IKFL 143 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999999988887654 346789999999999975 345555555554332 5799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 144 ~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 144 ETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999865
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd04128 Spg1 Spg1p | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=184.36 Aligned_cols=157 Identities=22% Similarity=0.274 Sum_probs=123.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+|++++|.+|+|||||++++..+.+. .+.||.+.+. ..+..++ ..+.+||++|++++..++..+++++|++++|+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 48999999999999999999998887 5888998765 4566776 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|++++.+|..+..|+..+.... ....| ++|+||+|+..+...+ .+.+..... .....+++++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~-------------a~~~~~~~~e 145 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKY-------------AKAMKAPLIF 145 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHH-------------HHHcCCEEEE
Confidence 9999999999999988886642 23456 6889999986422111 111111110 0111267999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.|++++|+++.+.+
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l 165 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKA 165 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998754
|
Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=181.98 Aligned_cols=157 Identities=18% Similarity=0.277 Sum_probs=127.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.+||+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++++|++++|
T Consensus 1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 3579999999999999999999988765 4556655432 3444555 5789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++++||+|+... ...++..+..+... +++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLK-----------------IPYIE 143 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcC-----------------CcEEE
Confidence 999999999999999888876555568999999999998653 23344444443322 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 144 ~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 144 TSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred eeCCCCCCHHHHHHHHHHhh
Confidence 99999999999999998765
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04108 Rab36_Rab34 Rab34/Rab36 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=181.94 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=125.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|.+|||||||++++....+. .+.||.+... ..+..++ ..+.+||+||++++..++..+++++|++++|+
T Consensus 1 ~ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 37999999999999999999999886 6778887664 3455555 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+++++++.....|+..+.+.....+.|+++|+||+|+.+... .++........ ..+++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM-----------------QAEYW 143 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc-----------------CCeEE
Confidence 9999999999999998887654444678999999999865322 22223333221 15789
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+.|.+.+
T Consensus 144 e~Sa~~g~~v~~lf~~l~~~~ 164 (170)
T cd04108 144 SVSALSGENVREFFFRVAALT 164 (170)
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999998753
|
Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re |
| >smart00173 RAS Ras subfamily of RAS small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-30 Score=180.72 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++.+..+. .+.+|.... ...+..++ ..+.+||+||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 48999999999999999999988876 455555433 23444554 678999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++++++.....|+..+.......+.|+++++||+|+.+. ...++.....+... .+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG-----------------CPFLETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC-----------------CEEEEee
Confidence 9999999999998888776655568999999999998652 33444444443322 6899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|++|.+++
T Consensus 144 a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 144 AKERVNVDEAFYDLVREI 161 (164)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 999999999999999875
|
Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades |
| >cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5e-30 Score=187.60 Aligned_cols=167 Identities=17% Similarity=0.233 Sum_probs=122.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|.+|||||||++++....++ .+.||++.++. .+..++ ..+.+||++|++.+..+++.+++++|++++|||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfd 81 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFD 81 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEE
Confidence 68999999999999999999998887 68888887653 455555 689999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++|+.+..+|...+.. ..++.|+++|+||+|+..+... .++.+. .......+++...++..+ ..+|++|||
T Consensus 82 is~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~-~~~pIs~e~g~~~ak~~~--~~~y~E~SA 157 (222)
T cd04173 82 ISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQ-RLIPVTHEQGTVLAKQVG--AVSYVECSS 157 (222)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhc-cCCccCHHHHHHHHHHcC--CCEEEEcCC
Confidence 99999999996555544433 3468999999999998653210 010000 000000111111111121 248999999
Q ss_pred ccCCC-hHHHHHHHhhh
Q psy2159 177 LKRQG-FGNGFRWLANY 192 (194)
Q Consensus 177 ~~~~~-v~~l~~~l~~~ 192 (194)
+++++ |+++|+.+...
T Consensus 158 k~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 158 RSSERSVRDVFHVATVA 174 (222)
T ss_pred CcCCcCHHHHHHHHHHH
Confidence 99985 99999998763
|
Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=180.29 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=126.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+.++. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 58999999999999999999999886 5677777544 3344444 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+... ...+.|+++++||+|+.+. ...++..+..+... ++++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLG-----------------FEFFEA 143 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999988887543 3357899999999998653 33445544444322 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 144 Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 144 SAKENINVKQVFERLVDII 162 (165)
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >KOG0079|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-31 Score=174.10 Aligned_cols=153 Identities=21% Similarity=0.355 Sum_probs=136.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++.+++|.+|+|||+|+.++..+.|+ .|..|+|.+ +.+++++| ++++|||++|+++++.+...++++.+++++|+
T Consensus 9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY 88 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY 88 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence 46789999999999999999999888 688888876 45777777 79999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++.+||.+...|+.++.+.. +..|-++|+||.|.++ ....++.+.+...++ +.+|++
T Consensus 89 DVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mg-----------------ie~FET 149 (198)
T KOG0079|consen 89 DVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQMG-----------------IELFET 149 (198)
T ss_pred ECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHhcC-----------------chheeh
Confidence 9999999999999999996654 6889999999999877 566777888887766 889999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++.+|++..|..|.+++
T Consensus 150 SaKe~~NvE~mF~cit~qv 168 (198)
T KOG0079|consen 150 SAKENENVEAMFHCITKQV 168 (198)
T ss_pred hhhhcccchHHHHHHHHHH
Confidence 9999999999999998763
|
|
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-30 Score=184.97 Aligned_cols=154 Identities=21% Similarity=0.275 Sum_probs=123.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
+|+++|.+|||||||++++..+.+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5889999999999999999988876 4666665443 3445555 4689999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
++.++|..+..|+..+..... ..+.|+++|+||+|+.. ....++.....+... ++++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 143 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLG-----------------CEFIEA 143 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEe
Confidence 999999999998888765432 36789999999999864 333444444333222 679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 144 SAk~~~~v~~l~~~l~~~l 162 (190)
T cd04144 144 SAKTNVNVERAFYTLVRAL 162 (190)
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04103 Centaurin_gamma Centaurin gamma | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-30 Score=179.00 Aligned_cols=151 Identities=17% Similarity=0.254 Sum_probs=119.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
+||+++|++|||||||++++....+.. +.|+.+.....+.+++ ..+.+||++|++. ..+++++|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 479999999999999999999888764 3444444445677777 6799999999975 3456789999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+++++|+.+..|+..+......++.|+++|+||+|+.. ..+.++..+..+. ...+.|++|
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~----------------~~~~~~~e~ 139 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD----------------MKRCSYYET 139 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH----------------hCCCcEEEE
Confidence 99999999999999988776557799999999999742 3344444333321 123789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|+.+.+.+
T Consensus 140 SAk~~~~i~~~f~~~~~~~ 158 (158)
T cd04103 140 CATYGLNVERVFQEAAQKI 158 (158)
T ss_pred ecCCCCCHHHHHHHHHhhC
Confidence 9999999999999998754
|
The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. |
| >KOG0098|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=177.39 Aligned_cols=156 Identities=21% Similarity=0.265 Sum_probs=137.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+|++++|..|+|||+|+.+++.+.|. .+..|+|... ..+.+++ .++++|||.|++.+++....+|+++-+++
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 35679999999999999999999999987 5667888764 4555655 79999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++..++|..+..|+.++.++ ..++.-+++++||+|+.. +++.+|...+.++.+ ..|
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehg-----------------Lif 145 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHG-----------------LIF 145 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcC-----------------cee
Confidence 999999999999999999999766 357889999999999865 888999999988766 778
Q ss_pred EEeccccCCChHHHHHHHhhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++||++++||+|+|......
T Consensus 146 mETSakt~~~VEEaF~nta~~ 166 (216)
T KOG0098|consen 146 METSAKTAENVEEAFINTAKE 166 (216)
T ss_pred ehhhhhhhhhHHHHHHHHHHH
Confidence 899999999999999876654
|
|
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=179.54 Aligned_cols=154 Identities=23% Similarity=0.348 Sum_probs=127.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++++|++++|+
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~ 82 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVY 82 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEE
Confidence 68999999999999999999998876 4566666543 4455555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+... ..++.|+++++||+|+.. ....++.....+... ++++++
T Consensus 83 d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (166)
T cd01869 83 DVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELG-----------------IPFLET 144 (166)
T ss_pred ECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 999999999999988887554 235789999999999865 344455555554333 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 145 SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ECCCCcCHHHHHHHHHHHH
Confidence 9999999999999998865
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >KOG0077|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.1e-31 Score=176.07 Aligned_cols=193 Identities=62% Similarity=1.023 Sum_probs=176.3
Q ss_pred ccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 2 FEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+|.||+++++.+++++++.|++++|-.++|||||++.+.+++..+..||..|+.+...+++.+++.+|.+|+...++.
T Consensus 1 ~fl~ewF~~VLq~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~ 80 (193)
T KOG0077|consen 1 SFLFEWFSSVLQFLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRV 80 (193)
T ss_pred CcHHHHHHHHHHHHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
|..++..+|++++.+|+.+.+.|.+.+..+..++......+.|+++.+||+|.+...+.++++-.++........+....
T Consensus 81 wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~ 160 (193)
T KOG0077|consen 81 WKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNL 160 (193)
T ss_pred HHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999998888888766789999999999999998899999888877665555554445
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.....+...++.||...+.+--+.|.|+.+.++
T Consensus 161 ~~~~~rp~evfmcsi~~~~gy~e~fkwl~qyi~ 193 (193)
T KOG0077|consen 161 TDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193 (193)
T ss_pred cCCCCCeEEEEEEEEEccCccceeeeehhhhcC
Confidence 556777889999999999999999999887764
|
|
| >cd04134 Rho3 Rho3 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=185.70 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=123.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++..+.+. .+.||.+.... .+..++ ..+.+||++|++++..++..+++++|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 37999999999999999999999887 46777766543 344454 689999999999999888889999999999999
Q ss_pred CCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++|..+. .|+..+... .++.|+++|+||+|+......++.....+.......++.... .....+.+++|||
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~e~SA 156 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVA--KRINALRYLECSA 156 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHH--HHcCCCEEEEccC
Confidence 99999999886 466666543 357999999999999764333222221111100000000001 1112367999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+++.+.+
T Consensus 157 k~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 157 KLNRGVNEAFTEAARVA 173 (189)
T ss_pred CcCCCHHHHHHHHHHHH
Confidence 99999999999998753
|
Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd04116 Rab9 Rab9 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=179.17 Aligned_cols=158 Identities=18% Similarity=0.273 Sum_probs=129.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++.+|++++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 4579999999999999999999988876 4566766553 3455555 678999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|+|+++++++..+..|...++.... ..+.|+++++||+|+.. ....+++.+..+... ..+
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~ 147 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENG----------------DYP 147 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCC----------------CCe
Confidence 9999999999999988887766432 35689999999999864 455666666664321 247
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|+.++|+++.+.+
T Consensus 148 ~~e~Sa~~~~~v~~~~~~~~~~~ 170 (170)
T cd04116 148 YFETSAKDATNVAAAFEEAVRRV 170 (170)
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 99999999999999999998764
|
Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=186.28 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=126.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||+++|.+..+. .+.||.+... ..+..+ ...+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 48999999999999999999998876 5677877653 445554 37899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
||++++++|..+..|+..+..... ..+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~-----------------~~~ 143 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANG-----------------MES 143 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 999999999999988888766432 24568999999999864 344444454443322 678
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|+|++++|+++.+.+
T Consensus 144 ~~iSAktg~gv~~lf~~l~~~l 165 (215)
T cd04109 144 CLVSAKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=175.32 Aligned_cols=157 Identities=30% Similarity=0.567 Sum_probs=132.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
.|+++|++|||||||++++.+.++. .+.||.+.+...+..++..+.+||+||+.++...+..++..+|++++|+|+++.
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 80 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADR 80 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCH
Confidence 3789999999999999999998876 678888888888888889999999999999999999999999999999999998
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++..+.......++|+++++||+|+......+++........ .....++++++||++|.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~g 148 (159)
T cd04159 81 TALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKS------------ITDREVSCYSISCKEKTN 148 (159)
T ss_pred HHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCccc------------ccCCceEEEEEEeccCCC
Confidence 88888888888887765557899999999999877555555544443221 223447899999999999
Q ss_pred hHHHHHHHhh
Q psy2159 182 FGNGFRWLAN 191 (194)
Q Consensus 182 v~~l~~~l~~ 191 (194)
+++++++|.+
T Consensus 149 i~~l~~~l~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred hHHHHHHHhh
Confidence 9999999975
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >KOG0075|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-30 Score=169.51 Aligned_cols=165 Identities=31% Similarity=0.558 Sum_probs=156.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+..++++.++|..+||||||+|.++.+.+. ...||.|.+...++-+...+.+||.||+++++++|..|++.+++++||
T Consensus 16 f~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 16 FWKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred HHHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 4788999999999999999999999998776 799999999999999999999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++++.++..+..+.+++......++|+++.+||.|++.+....++...++... ...+.+-.+.+|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~s------------itdREvcC~siS 163 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSS------------ITDREVCCFSIS 163 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccc------------cccceEEEEEEE
Confidence 99999999999999999999998889999999999999999999999999998876 788889999999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
+++..|++-+.+||.++.
T Consensus 164 cke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 164 CKEKVNIDITLDWLIEHS 181 (186)
T ss_pred EcCCccHHHHHHHHHHHh
Confidence 999999999999999864
|
|
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=178.42 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=121.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.++.+. .+.||.+.... .+..+. ..+.+||+||++++..++..+++.+|++++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 68999999999999999999998875 45666665443 233333 679999999999999988888999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 98 ASDRSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+++++++..+..|+..+.... ..++.|+++|+||+|+.+ ....++........ ...+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----------------~~~~~e 144 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEW-----------------NCAFME 144 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHh-----------------CCcEEE
Confidence 999999999988877665432 236799999999999865 23333333333221 257999
Q ss_pred eccccCCChHHHHHHHhhh
Q psy2159 174 CSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~ 192 (194)
|||++|.|++++|++|.+.
T Consensus 145 ~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 145 TSAKTNHNVQELFQELLNL 163 (165)
T ss_pred eecCCCCCHHHHHHHHHhc
Confidence 9999999999999999864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >cd04110 Rab35 Rab35 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-29 Score=183.06 Aligned_cols=155 Identities=19% Similarity=0.323 Sum_probs=128.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..+++++|++++
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil 84 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV 84 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence 4679999999999999999999998876 5778877654 3455555 578999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++++|..+..|+..+... ....|+++|+||+|+.+. ...++......... +.++
T Consensus 85 v~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 145 (199)
T cd04110 85 VYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMG-----------------ISLF 145 (199)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999999998887554 367899999999998763 34455555544322 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 146 e~Sa~~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 146 ETSAKENINVEEMFNCITELV 166 (199)
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
|
Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=181.24 Aligned_cols=154 Identities=21% Similarity=0.323 Sum_probs=126.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|||||||++++....+. .+.+|.+.+.. .+.+++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 48999999999999999999998875 56677766543 355655 6899999999999999888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++.+++.++..|+..+... ...+.|+++++||+|+.. ....++......... .++++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~-----------------~~~~e 142 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYG-----------------VPFME 142 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcC-----------------CeEEE
Confidence 9999999999999988887654 335789999999999853 344455555544322 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~~ 162 (191)
T cd04112 143 TSAKTGLNVELAFTAVAKEL 162 (191)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=176.79 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=126.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+.+||+++|++|+|||||++++..+.+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 3579999999999999999999988776 345565543 45566666 578999999999999988999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ...++.....+.. ....++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~ 144 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKN----------------GMLAVL 144 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHc----------------CCcEEE
Confidence 99999999999999888888653 3467899999999998652 3344444444321 225689
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 145 e~Sa~~~~~v~~~~~~l~~~l 165 (165)
T cd01864 145 ETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998754
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04111 Rab39 Rab39 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=184.24 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=126.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+||+++|++|||||||++++.+..+.. +.+|.+.+. ..+... + ..+.+||++|++++...+..+++++|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5799999999999999999999988763 556766543 334442 3 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++++|..+..|+..+.........|+++++||+|+.+ ....++.....+... ++++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 144 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLG-----------------MKYI 144 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhC-----------------CEEE
Confidence 999999999999999999887654445678899999999865 334445444443322 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 145 e~Sak~g~~v~e~f~~l~~~~ 165 (211)
T cd04111 145 ETSARTGDNVEEAFELLTQEI 165 (211)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd01860 Rab5_related Rab5-related subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=176.13 Aligned_cols=155 Identities=20% Similarity=0.342 Sum_probs=129.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++||+++|++|||||||++++.+..+.. +.+|.+.. ...+.+++ ..+.+||+||++++...+..+++++|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999998874 67777654 34555555 6789999999999998888899999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++++.....|+..+..... ++.|+++++||+|+.. ....++.....+... +.+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~-~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 142 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS-PNIIIALVGNKADLESKRQVSTEEAQEYADENG-----------------LLFFE 142 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECccccccCcCCHHHHHHHHHHcC-----------------CEEEE
Confidence 999999999999999888876543 7799999999999874 345556655554422 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 143 ~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 143 TSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999876
|
This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=177.25 Aligned_cols=153 Identities=20% Similarity=0.332 Sum_probs=125.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+||+++|.+|+|||||++++.+..+. .+.+|.+.+. ..+.++ ...+.+||+||++++...+..+++++|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 48999999999999999999998776 5666766654 334444 3789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+... ..+.|+++|+||+|+.. ....++.....+... ++++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 141 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQ-----------------LPLF 141 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcC-----------------CeEE
Confidence 99999999999998888877543 35799999999999865 344555555554433 5799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 142 ~~Sa~~~~~v~~l~~~l~~~~ 162 (162)
T cd04106 142 RTSVKDDFNVTELFEYLAEKC 162 (162)
T ss_pred EEECCCCCCHHHHHHHHHHhC
Confidence 999999999999999998753
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=176.29 Aligned_cols=155 Identities=19% Similarity=0.293 Sum_probs=127.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+|+++|++|||||||++++.+.++. .+.||.+.+. ..+..++ ..+.+||+||++++...+..+++.++++++|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 368999999999999999999998876 5667776543 4455566 5789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++........ .+++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKN-----------------GLSFIE 144 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHHc-----------------CCEEEE
Confidence 99999999999998888876543 34689999999999865 33445555555332 267999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 145 ~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 145 TSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04113 Rab4 Rab4 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=175.67 Aligned_cols=154 Identities=21% Similarity=0.320 Sum_probs=126.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 48999999999999999999998875 4555655443 3445555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+... ..++.|+++++||.|+.+ ....++......... +.++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENG-----------------LLFLET 142 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 999999999999888876543 347899999999999865 344556655554322 789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~~~~~~~~~ 161 (161)
T cd04113 143 SALTGENVEEAFLKCARSI 161 (161)
T ss_pred ECCCCCCHHHHHHHHHHhC
Confidence 9999999999999998864
|
Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p |
| >smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=183.39 Aligned_cols=147 Identities=19% Similarity=0.324 Sum_probs=120.5
Q ss_pred EcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 27 LGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 27 ~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+|.+|||||||++++..+.+. .+.+|++.+... +..++ ..+.+||++|++++..++..+++++|++++|||+++.
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999988886 578888776543 34443 7999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (194)
.+|..+..|+..+.... .+.|+++|+||+|+... ...++ ....+ ...+.|++|||++|+
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~-~~~~~-----------------~~~~~~~e~SAk~~~ 140 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKS-ITFHR-----------------KKNLQYYDISAKSNY 140 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHH-HHHHH-----------------HcCCEEEEEeCCCCC
Confidence 99999999888887643 57999999999998642 22222 22222 123789999999999
Q ss_pred ChHHHHHHHhhhc
Q psy2159 181 GFGNGFRWLANYI 193 (194)
Q Consensus 181 ~v~~l~~~l~~~i 193 (194)
||+++|++|.+.+
T Consensus 141 ~v~~~F~~l~~~i 153 (200)
T smart00176 141 NFEKPFLWLARKL 153 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998754
|
Ran is involved in the active transport of proteins through nuclear pores. |
| >cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=176.78 Aligned_cols=156 Identities=22% Similarity=0.307 Sum_probs=126.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccch-hhHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d~ii~ 94 (194)
..+|+++|++|||||||++++....+. .+.+|.+... ..+..++ ..+.+||++|++++. ..+..+++++|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 469999999999999999999998876 4666766543 3455555 689999999999886 467888899999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+.......+.|+++|+||+|+... ...++.....+.. .++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH-----------------SMPLF 144 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHc-----------------CCcEE
Confidence 9999999999999998888877655578999999999998652 2333443343321 26799
Q ss_pred Eecccc---CCChHHHHHHHhhhc
Q psy2159 173 MCSVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~---~~~v~~l~~~l~~~i 193 (194)
+|||++ +.+++++|..+.+.+
T Consensus 145 e~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 145 ETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred EEeccCCcCCCCHHHHHHHHHHHh
Confidence 999999 999999999999876
|
Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-29 Score=175.01 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=119.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|.+|||||||++++....+. ...+|.+.+.. .+..++ ..+.+||++|++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 48999999999999999999988876 34455554432 334444 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....|+..+.+. .++.|+++++||+|+.+.. .++.....+. ..++++++||
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~-----------------~~~~~~~~Sa 140 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKFNFAEK-----------------HNLPLYYVSA 140 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHHHHHHH-----------------cCCeEEEEeC
Confidence 999999999998888887543 3578999999999985421 2222222211 1267999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|+.+.+.+
T Consensus 141 ~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 141 ADGTNVVKLFQDAIKLA 157 (161)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999998754
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-29 Score=175.34 Aligned_cols=153 Identities=26% Similarity=0.409 Sum_probs=132.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
||+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..+++.+|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7899999999999999999999877 5777876654 4555555 679999999999999988999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++++||..+..|+..+..... .+.|+++++||.|+.+ ..+.++..+...... .+|++||
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~e~S 142 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG-----------------VPYFEVS 142 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT-----------------SEEEEEB
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhC-----------------CEEEEEE
Confidence 9999999999999888876543 5689999999999876 677778777776544 8899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|+++.||.++|..+++.+
T Consensus 143 a~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 143 AKNGENVKEIFQELIRKI 160 (162)
T ss_dssp TTTTTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999875
|
This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A .... |
| >cd04132 Rho4_like Rho4-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-29 Score=179.32 Aligned_cols=154 Identities=16% Similarity=0.242 Sum_probs=121.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|+|||||++++.+..+. .+.+|.+... ..+..+ + ..+.+||+||++++...+..+++++|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 48999999999999999999999886 5666666553 334444 3 68999999999999999998999999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCC------CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++++|+.+.. |+..+... .++.|+++|+||.|+.+. ...++..+...... ..
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----------------~~ 142 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----------------AF 142 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----------------Cc
Confidence 9999999999875 55555432 367899999999998653 23445444443322 12
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~e~Sa~~~~~v~~~f~~l~~~~ 166 (187)
T cd04132 143 AYLECSAKTMENVEEVFDTAIEEA 166 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998754
|
Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-29 Score=174.82 Aligned_cols=155 Identities=21% Similarity=0.290 Sum_probs=127.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|++|||||||++++.+.++. .+.+|.+.+ ...+..++ ..+.+||+||++++......+++.+|++++|
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v 83 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 83 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998875 344555554 34455555 6899999999999999888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++++..+..|+.++.... .++.|+++|+||.|+.+ ....++......... +.+++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e 145 (168)
T cd01866 84 YDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHG-----------------LIFME 145 (168)
T ss_pred EECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEE
Confidence 99999999999999888886542 36799999999999874 345556655554333 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++++|++++|+++.+++
T Consensus 146 ~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 146 TSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04143 Rhes_like Rhes_like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=183.74 Aligned_cols=155 Identities=22% Similarity=0.278 Sum_probs=128.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.+|+++|.+|||||||++++..+.+. .+.||.+. ....+.+++ +.+.+||++|++.+..++..++..+|++++|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 47999999999999999999988887 56777763 344566666 678899999999998888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhC--------CCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 98 ASDRSRFPESKYELDNLLAD--------DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++.++|+.+..|+..+... ....+.|+++|+||+|+.. ....+++.+.+.. ..
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~----------------~~ 144 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG----------------DE 144 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh----------------cC
Confidence 99999999999888888653 1335799999999999864 4566676666532 12
Q ss_pred ceEEEEeccccCCChHHHHHHHhhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+.++++||++|.|++++|++|.+.
T Consensus 145 ~~~~~evSAktg~gI~elf~~L~~~ 169 (247)
T cd04143 145 NCAYFEVSAKKNSNLDEMFRALFSL 169 (247)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999874
|
This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l |
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=172.93 Aligned_cols=154 Identities=23% Similarity=0.310 Sum_probs=124.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|++|||||||++++.+..+. .+.++.+.+ ...+..++ ..+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 38999999999999999999998876 445555544 34555665 57999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+.... ..+.|+++++||+|+.+ ....++.....+... ..++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN-----------------AMFIET 142 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhC-----------------CEEEEE
Confidence 9999999999999988876543 23699999999999944 234444444443322 779999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||+++.|++++|+++.+.+
T Consensus 143 Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 143 SAKAGHNVKELFRKIASAL 161 (161)
T ss_pred eCCCCCCHHHHHHHHHHhC
Confidence 9999999999999998764
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >KOG0093|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=167.15 Aligned_cols=156 Identities=20% Similarity=0.299 Sum_probs=134.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.-+|++++|.+.+|||||+.++.+..|. .+..|+|...+ ++-.+. .++++|||.|+++++.....++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4459999999999999999999999987 57778887643 332222 799999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+++++||..+..|...+... .-.+.|+|+++||||+.+ .++.+......+.++ ..||
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LG-----------------fefF 161 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLG-----------------FEFF 161 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhC-----------------hHHh
Confidence 99999999999999998888543 557899999999999866 466777777777766 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||.+.||+.+|+.++..|
T Consensus 162 EtSaK~NinVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 162 ETSAKENINVKQVFERLVDII 182 (193)
T ss_pred hhcccccccHHHHHHHHHHHH
Confidence 999999999999999998765
|
|
| >KOG0087|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=176.99 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=139.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+|++++|.+++|||-|+.++..++|. +.-+|+|.... .+..++ .+.++|||+||++|++....+|+++.++
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 346789999999999999999999999998 67778888654 455555 7999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++...+|+++..|+.+++.+. .+++++++|+||+||.. .++.++.+...+... ..
T Consensus 91 llVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~-----------------l~ 152 (222)
T KOG0087|consen 91 LLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEG-----------------LF 152 (222)
T ss_pred EEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHhcC-----------------ce
Confidence 99999999999999999999998764 36899999999999976 677888888887766 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++||.++.||+++|+.++..|
T Consensus 153 f~EtSAl~~tNVe~aF~~~l~~I 175 (222)
T KOG0087|consen 153 FLETSALDATNVEKAFERVLTEI 175 (222)
T ss_pred EEEecccccccHHHHHHHHHHHH
Confidence 99999999999999999887654
|
|
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-28 Score=172.23 Aligned_cols=155 Identities=22% Similarity=0.332 Sum_probs=128.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+|++++|++|||||||++++.+..+. ...+|.+.+.. .+.+++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 48999999999999999999998876 46677766543 344554 68999999999999888888999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
|++++.++.....|+..+.......+.|+++++||+|+.. ....++..+...... .+++++|
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN-----------------MLFIETS 143 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC-----------------CEEEEEe
Confidence 9999999999999888887766667899999999999974 445556555554322 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++++++.+.+
T Consensus 144 a~~~~gi~~~~~~~~~~~ 161 (161)
T cd01863 144 AKTRDGVQQAFEELVEKI 161 (161)
T ss_pred cCCCCCHHHHHHHHHHhC
Confidence 999999999999998764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd04125 RabA_like RabA-like subfamily | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=177.46 Aligned_cols=154 Identities=18% Similarity=0.310 Sum_probs=125.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+.. +.+|.+... ..+..++ ..+.+||++|++.+...+..+++++|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 489999999999999999999998874 777877654 3455555 57899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++++|..+..|+..+.... ..+.|+++++||.|+.+. ...++.....+... ++++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ev 142 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLN-----------------IPFFET 142 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999999999999888876542 345899999999998752 34444444443222 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++.+.+
T Consensus 143 Sa~~~~~i~~~f~~l~~~~ 161 (188)
T cd04125 143 SAKQSINVEEAFILLVKLI 161 (188)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >PLN03118 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-28 Score=180.02 Aligned_cols=159 Identities=23% Similarity=0.319 Sum_probs=128.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....+||+++|++|||||||++++....+..+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4567899999999999999999999988877778877654 3455555 57899999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+|++++++|..+..+|...+.. ....+.|+++|+||+|+... ...++......... ..
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~-----------------~~ 153 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHG-----------------CL 153 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CE
Confidence 999999999999998766554443 33356899999999998652 33344444443222 67
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~e~SAk~~~~v~~l~~~l~~~~ 176 (211)
T PLN03118 154 FLECSAKTRENVEQCFEELALKI 176 (211)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
|
| >PLN03110 Rab GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=180.65 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=128.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+||+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||++|++++...+..++++++++++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il 90 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL 90 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence 4579999999999999999999998876 5667777654 4566665 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.+|+.+..|+..+... ...+.|+++++||+|+.+ ....++........ .++++
T Consensus 91 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~-----------------~~~~~ 152 (216)
T PLN03110 91 VYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKE-----------------GLSFL 152 (216)
T ss_pred EEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHc-----------------CCEEE
Confidence 99999999999999888877554 335799999999999855 23344444443322 27899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 153 e~SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 153 ETSALEATNVEKAFQTILLEI 173 (216)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >cd04135 Tc10 TC10 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-29 Score=177.46 Aligned_cols=169 Identities=21% Similarity=0.251 Sum_probs=120.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 48999999999999999999998876 4666665433 3455565 467899999999999888889999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
++++.+|......|...+... .++.|+++++||+|+.++....+.............++..... ......+++|||+
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~e~Sa~ 157 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAK--EIGAHCYVECSAL 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHH--HcCCCEEEEecCC
Confidence 999999999875444443332 5789999999999986532222111111111100001111111 1122469999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.|++++|+.+.+.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999998764
|
TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti |
| >cd04118 Rab24 Rab24 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=177.32 Aligned_cols=153 Identities=21% Similarity=0.292 Sum_probs=123.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+||+++|++|+|||||++++..+.+. .+.+|.+... ..+..++ ..+.+||++|++++...+..+++++|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 48999999999999999999998885 3777877654 3566666 5678999999999998888889999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC------CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|++++.+++.+..|+..+... .++.|+++|+||+|+.+. ...+++.+..... ..
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-----------------~~ 141 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI-----------------KA 141 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc-----------------CC
Confidence 9999999999988888877553 257899999999998542 1223333333221 26
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+++.+.+
T Consensus 142 ~~~~~Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 142 QHFETSSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998754
|
Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita |
| >smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-29 Score=176.08 Aligned_cols=152 Identities=17% Similarity=0.291 Sum_probs=117.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
|+++|++|||||||++++.+..+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 578999999999999999998886 4556654443 3455555 46999999999999998888999999999999999
Q ss_pred CCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccCccccc
Q psy2159 100 DRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 100 ~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++|+.+.. |+..+... .++.|+++|+||+|+.... ..++.....+.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------- 143 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKR--------------- 143 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHH---------------
Confidence 9999999875 66655443 3689999999999986521 11222222211
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++|||++|.|++++|+.+.+.+
T Consensus 144 -~~~~~~~e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 144 -IGAVKYLECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred -cCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 1224799999999999999999998753
|
Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=172.48 Aligned_cols=154 Identities=23% Similarity=0.337 Sum_probs=126.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988775 4556655543 4566666 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+++.+..|+..+.... .++.|+++++||+|+.. ....++..+..+... ++++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 142 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHG-----------------LPFFET 142 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999999999888887776553 25899999999999865 334555555554322 679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++++++.+++
T Consensus 143 Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 143 SAKTNTNVEEAFEELAREI 161 (164)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998865
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-28 Score=173.00 Aligned_cols=157 Identities=18% Similarity=0.233 Sum_probs=125.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+++|+++|++|||||||++++.++.+. .+.+|.+... ..+..++ ..+.+||+||++++..++..+++.++++++|+
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 468999999999999999999988875 4566665443 3445555 68899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|.++++++.....|...+.......+.|+++++||.|+... ...++.....+. ....+++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~ 144 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ----------------WGNVPFYET 144 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH----------------cCCceEEEe
Confidence 99999999999988887766555568999999999998652 333333333221 122679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+++..++
T Consensus 145 SA~~~~~i~~~f~~i~~~~ 163 (168)
T cd04177 145 SARKRTNVDEVFIDLVRQI 163 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998754
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=171.81 Aligned_cols=155 Identities=20% Similarity=0.308 Sum_probs=127.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++....+. .+.++.+.... ....++ ..+.+||+||+.++...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 48999999999999999999988876 45555554433 334443 679999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.++.....|+..+.......++|+++|+||+|+.. ....++......... .+++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 143 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG-----------------VPYVETS 143 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEEEee
Confidence 999999999999999998765567899999999999876 234444444443322 5799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+++
T Consensus 144 a~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 144 AKTRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=172.02 Aligned_cols=153 Identities=18% Similarity=0.322 Sum_probs=120.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCCccee--EEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLHPTSE--ELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~~~~~--~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+||+++|++|||||||++++... .+. .+.+|.+++.. .+..+ ...+.+||+||++.+..++..++.++|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 48999999999999999999864 444 56777776542 33332 379999999999999998899999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|+++++++..+..|+..+.... .+.|+++|+||+|+.+. ....+........ ..++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 141 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQAN-----------------QLKF 141 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHc-----------------CCeE
Confidence 9999999999998888888776543 56899999999998653 2332332322221 1579
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+.+.+.+
T Consensus 142 ~~~Sa~~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 142 FKTSALRGVGYEEPFESLARAF 163 (164)
T ss_pred EEEeCCCCCChHHHHHHHHHHh
Confidence 9999999999999999998764
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >KOG0086|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-29 Score=164.45 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=133.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..-+|++++|+.|+|||+|++++..+++. +..+|+|... ..++.++ +++++|||.||+++++..+.+|+++.+.+
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl 86 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 86 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence 34579999999999999999999999987 6888888764 4566665 79999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++..++|+.+..|+.+.... ..+++-+++++||.|+.+ ++...|...+.++-. ..+
T Consensus 87 LVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEne-----------------l~f 148 (214)
T KOG0086|consen 87 LVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LMF 148 (214)
T ss_pred EEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccc-----------------eee
Confidence 999999999999999999998654 457788899999999976 566667776665433 689
Q ss_pred EEeccccCCChHHHHHHHhhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.++||++|+||+|.|-...+.
T Consensus 149 lETSa~TGeNVEEaFl~c~~t 169 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCART 169 (214)
T ss_pred eeecccccccHHHHHHHHHHH
Confidence 999999999999999765543
|
|
| >PLN03108 Rab family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-28 Score=176.84 Aligned_cols=156 Identities=22% Similarity=0.305 Sum_probs=128.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+||+++|++|||||||++++....+. .+.+|++.+. ..+.+++ ..+.+||++|++.+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 4579999999999999999999998776 4566776653 3456655 578899999999999989999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++..+..|+..+... ..++.|+++++||+|+.. ....++..+..+... ++++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHG-----------------LIFM 146 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcC-----------------CEEE
Confidence 99999999999998888876544 235799999999999865 345566666664433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||+++.|++++|+++.+.+
T Consensus 147 e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 147 EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998754
|
|
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=175.67 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=119.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchh--------hHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARR--------VWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~--------~~~~~~~~ 88 (194)
.+|+++|.+|||||||++++.+..+. .+.||.+... ..+..++ ..+.+|||||..++.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 48999999999999999999998886 4677766443 3556666 6788999999764321 13345788
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccccc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+|++++|||++++++|+.+..|+..+.... ...+.|+++|+||+|+... ...++.......
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~--------------- 145 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRK--------------- 145 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHH---------------
Confidence 999999999999999999998888887653 2467999999999999652 233333333221
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+|++|||++|.|++++|+.+.+.+
T Consensus 146 -~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 146 -SWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred -hcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 1136799999999999999999998753
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04146 RERG_RasL11_like RERG/RasL11-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=171.55 Aligned_cols=154 Identities=21% Similarity=0.321 Sum_probs=118.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ii~v~d 97 (194)
+|+++|++|||||||++++....+. .+.+|.... ...+..++ ..+.+||+||+.. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999987775 455555332 33445555 5789999999985 34456778899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 98 ASDRSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.+ ....++..+..+... .+++++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~ 143 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELG-----------------CLFFEV 143 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcC-----------------CEEEEe
Confidence 9999999999888777665432 45799999999999854 334445555543322 679999
Q ss_pred ccccC-CChHHHHHHHhhhc
Q psy2159 175 SVLKR-QGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~-~~v~~l~~~l~~~i 193 (194)
||++| .|++++|+++.+.+
T Consensus 144 Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 144 SAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CCCCCchhHHHHHHHHHHHH
Confidence 99999 59999999998765
|
RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu |
| >KOG0091|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-28 Score=165.51 Aligned_cols=160 Identities=19% Similarity=0.316 Sum_probs=137.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEe--C-CEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSM--G-DIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~--~-~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
++..+++++++|.+-+|||+|++.++.++++ -..||+|.+. .-+++ + ..++++|||+||+++++....+|+++-
T Consensus 4 if~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsv 83 (213)
T KOG0091|consen 4 IFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSV 83 (213)
T ss_pred ceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhccc
Confidence 4567889999999999999999999999998 4678888763 12232 2 279999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++++|+|+++.+||+.+..|+.+....-..|.+++ .+|++|+|+.. .+..+|........+
T Consensus 84 gvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hg---------------- 147 (213)
T KOG0091|consen 84 GVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHG---------------- 147 (213)
T ss_pred ceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcC----------------
Confidence 99999999999999999999999877766677777 58899999865 677888888877666
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|+++||++|.||++.|+-+.+.+
T Consensus 148 -M~FVETSak~g~NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 148 -MAFVETSAKNGCNVEEAFDMLAQEI 172 (213)
T ss_pred -ceEEEecccCCCcHHHHHHHHHHHH
Confidence 9999999999999999999887643
|
|
| >cd04148 RGK RGK subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=177.89 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=118.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchhhHhhhhh-cCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFP-AVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~-~~d~ii~ 94 (194)
+||+++|++|+|||||++++..+.+. .+.+|.+ .....+..++ ..+.+||+||++ ......++. ++|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 48999999999999999999887774 5556664 3344556544 689999999998 223344556 8999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++.+|.....|+..+.......+.|+++|+||+|+.+. ...++........ ..+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~-----------------~~~~~ 141 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF-----------------DCKFI 141 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc-----------------CCeEE
Confidence 9999999999999998888876554568999999999998652 3344443333221 25799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.||+++|+++.+++
T Consensus 142 e~SA~~~~gv~~l~~~l~~~~ 162 (221)
T cd04148 142 ETSAGLQHNVDELLEGIVRQI 162 (221)
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999875
|
The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-28 Score=170.11 Aligned_cols=156 Identities=21% Similarity=0.327 Sum_probs=124.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+. ...+|.+.+. ..+..++ ..+.+||+||++.+...+..+++++|++++++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 48999999999999999999998775 4455655443 4455665 56789999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 97 DASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
|++++.++.....|...++.... ..+.|+++++||+|+.. ....+++....+.. ...++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~ 144 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSN----------------GNIPY 144 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHc----------------CCceE
Confidence 99999888888877776655432 34799999999999973 44556655555331 13679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+++.+.+
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998753
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd01873 RhoBTB RhoBTB subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-28 Score=174.28 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=113.5
Q ss_pred CCeEEEEcCCCCChHHHHH-HHHcCCC------CccccCCCc-c-ee-E--------EEeCC--EEEEEEEcCCCccchh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQ-MLKNDRT------AQHMPTLHP-T-SE-E--------LSMGD--IVFTTHDLGGHVQARR 80 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~-~~~~~~~------~~~~~t~~~-~-~~-~--------~~~~~--~~~~~~d~~g~~~~~~ 80 (194)
.+||+++|.+|||||||+. ++.+..+ ..+.||++. . .. . +..++ ..+.+|||+|+++ .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4699999999999999995 6655433 246677753 2 11 1 13344 7899999999975 3
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCC---------------------CC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFD---------------------AA 138 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~---------------------~~ 138 (194)
....+++++|++++|||++++.+|..+.. |+..+... .++.|+++|+||+|+.+ ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45667899999999999999999999974 66666443 25789999999999853 23
Q ss_pred CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+.++..+..+... .+|++|||++|.||+++|+.+.++
T Consensus 158 ~~~e~~~~a~~~~-----------------~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGRAVAKELG-----------------IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHHHHHHHhC-----------------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 4445555544333 689999999999999999999875
|
Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. |
| >cd04123 Rab21 Rab21 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=167.38 Aligned_cols=154 Identities=23% Similarity=0.351 Sum_probs=122.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.||+++|++|+|||||++++.+..+. ...+|.... ...+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 48999999999999999999998775 344444343 23444444 57999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++.....|+..+..... .+.|+++++||+|+.. ....+++.+...... ..++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG-----------------AKHFET 142 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEE
Confidence 99999999998888877755432 3789999999999875 234455555544322 678999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++++|++++++++.+.+
T Consensus 143 s~~~~~gi~~~~~~l~~~~ 161 (162)
T cd04123 143 SAKTGKGIEELFLSLAKRM 161 (162)
T ss_pred eCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998764
|
The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site |
| >cd01870 RhoA_like RhoA-like subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=172.56 Aligned_cols=166 Identities=17% Similarity=0.271 Sum_probs=119.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|||||||++++.+..+. .+.||.+... ..+.+++ ..+.+||++|++++...+..++.++|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999998886 5777776653 4556655 578999999999988888788899999999999
Q ss_pred CCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++.++|..+.. |...+... ..+.|+++++||+|+.+.... +++. ...........+..... ......+++||
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~-~~~~~~v~~~~~~~~~~--~~~~~~~~~~S 156 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELA-KMKQEPVKPEEGRDMAN--KIGAFGYMECS 156 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhh-hccCCCccHHHHHHHHH--HcCCcEEEEec
Confidence 999999988865 44444332 357899999999998653211 1111 00000000000000011 11235799999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|.|++++|++|.+.
T Consensus 157 a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 157 AKTKEGVREVFEMATRA 173 (175)
T ss_pred cccCcCHHHHHHHHHHH
Confidence 99999999999999875
|
The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=170.45 Aligned_cols=156 Identities=19% Similarity=0.217 Sum_probs=121.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
++.+||+++|.+|||||||++++.++.+. .+.||.+... ..+..++ ..+.+||++|++.+...+..++.++|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46679999999999999999999999885 5778887654 4566666 6789999999999988888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.. ..+.|+++|+||+|+.+... ..+..+..+... . ..
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~--------------~--~~ 142 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLG--------------L--PP 142 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcC--------------C--CC
Confidence 999999999888888777765522 24789999999999865321 112222221111 1 23
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|+.+.+.+
T Consensus 143 ~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 143 PLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred CEEEEeccCccHHHHHHHHHHHh
Confidence 68999999999999999998754
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd01893 Miro1 Miro1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-28 Score=170.42 Aligned_cols=156 Identities=17% Similarity=0.268 Sum_probs=114.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.|++++|.+|||||||++++..+.+....++..... ....+ .+..+.+||+||+.++...+..++..+|++++|+|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 389999999999999999999988864434322222 22233 347899999999998888777888999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+++.++..+..+|...+.... .+.|+++|+||+|+.+.... +++....+.. .....+++|
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~e~ 144 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEF---------------REIETCVEC 144 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHH---------------hcccEEEEe
Confidence 999999998654444443322 47999999999999764332 1222111110 011369999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|+.+.+.+
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999999998764
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-27 Score=166.64 Aligned_cols=152 Identities=22% Similarity=0.344 Sum_probs=126.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcceeEEE--eC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSEELS--MG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~~~~--~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.+..+.. +.+|.+.+..... .+ ...+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 489999999999999999999998874 4677777655433 32 378999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--CCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+..+.... ..+.|+++++||+|+. .....+++.+...... .+++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 142 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKENG-----------------LLFFET 142 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHHcC-----------------CeEEEE
Confidence 9999888999888887776542 2579999999999995 4556667766665433 789999
Q ss_pred ccccCCChHHHHHHHhh
Q psy2159 175 SVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~ 191 (194)
||+++.|++++|++|.+
T Consensus 143 sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 143 SAKTGENVEELFQSLAE 159 (159)
T ss_pred ecCCCCCHHHHHHHHhC
Confidence 99999999999999864
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04130 Wrch_1 Wrch-1 subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=169.18 Aligned_cols=151 Identities=16% Similarity=0.254 Sum_probs=115.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+|++++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||+||++++...+..+++++|++++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 48999999999999999999988776 4555543222 3455555 678999999999999988889999999999999
Q ss_pred CCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccCccc
Q psy2159 98 ASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 98 ~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++++++|+... .|+..+... .++.|+++++||+|+.+.. ..++...+.+.
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~------------- 145 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK------------- 145 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH-------------
Confidence 99999999886 466555432 3578999999999986421 12222222211
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
.....+++|||++|.|++++|+.+.
T Consensus 146 ---~~~~~~~e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 146 ---IGACEYIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred ---hCCCeEEEEeCCCCCCHHHHHHHHH
Confidence 1224799999999999999999875
|
Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, |
| >KOG0072|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=161.88 Aligned_cols=173 Identities=29% Similarity=0.513 Sum_probs=157.1
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
.+++..+-...++.+++++|..|+||||++.++--.+...+.||++.+.+++.+.+.++++||..|+...+..|+.++.+
T Consensus 6 ~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~d 85 (182)
T KOG0072|consen 6 SSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYAD 85 (182)
T ss_pred HHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhcc
Confidence 34444444555999999999999999999999988888899999999999999999999999999999999999999999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
.|++|||+|.+|..........+..++......+..+++++||+|..-+....|....++... .+.+.
T Consensus 86 t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~------------Lk~r~ 153 (182)
T KOG0072|consen 86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQK------------LKDRI 153 (182)
T ss_pred cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHH------------Hhhhe
Confidence 999999999999998888888888888888888888999999999988889999988888766 77888
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|.+|.+||.+|+|+++.++|+.+.+
T Consensus 154 ~~Iv~tSA~kg~Gld~~~DWL~~~l 178 (182)
T KOG0072|consen 154 WQIVKTSAVKGEGLDPAMDWLQRPL 178 (182)
T ss_pred eEEEeeccccccCCcHHHHHHHHHH
Confidence 9999999999999999999999876
|
|
| >cd04147 Ras_dva Ras-dva subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-27 Score=171.61 Aligned_cols=155 Identities=20% Similarity=0.255 Sum_probs=123.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
||+++|.+|||||||++++....+.. +.+|... ....+.+++ ..+.+||+||+..+..++..++.++|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999988763 4455432 334566666 6899999999999998888899999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+++.+++....|+..+.......+.|+++++||+|+.+. ...++..+.... .....++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~----------------~~~~~~~~~S 144 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVEL----------------DWNCGFVETS 144 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHh----------------hcCCcEEEec
Confidence 999999999998888877655568999999999998652 222222222210 1125689999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.|++++|+++.+++
T Consensus 145 a~~g~gv~~l~~~l~~~~ 162 (198)
T cd04147 145 AKDNENVLEVFKELLRQA 162 (198)
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999999999999998864
|
Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=168.88 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=126.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
.||+++|++|+|||||++++....+. .+.||.+.. ...+..++ ..+.+||+||+.++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 58999999999999999999988876 355665543 44556655 567999999999999888899999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
.++..+++....++..++......+.|+++++||+|+.. ....++.....+... .+++++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 144 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG-----------------AAFLESS 144 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC-----------------CeEEEEe
Confidence 999999999999999988866557889999999999864 233334443333222 6799999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|+++.|+.++|+++.+.+
T Consensus 145 a~~~~gv~~l~~~l~~~~ 162 (180)
T cd04137 145 ARENENVEEAFELLIEEI 162 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
|
Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le |
| >KOG0074|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-28 Score=157.81 Aligned_cols=165 Identities=33% Similarity=0.590 Sum_probs=154.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC-EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
...++++|+++|-.++|||||++.+.+.......||.|++...+.+.+ ..+++||.+|+...+..|..||.+.|++|||
T Consensus 13 ~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 13 RTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred CCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 346899999999999999999999999999999999999999999988 8999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|++|+..|+++...+.++++.......|+.|..||.|+....+.+++...++... ...+.|.+.+||
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~------------lrdRswhIq~cs 160 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAG------------LRDRSWHIQECS 160 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhh------------hhhceEEeeeCc
Confidence 99999999999999999999988888999999999999999889999999988877 788899999999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|.+++|+..-.+|+....
T Consensus 161 als~eg~~dg~~wv~sn~ 178 (185)
T KOG0074|consen 161 ALSLEGSTDGSDWVQSNP 178 (185)
T ss_pred cccccCccCcchhhhcCC
Confidence 999999999999987653
|
|
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=164.91 Aligned_cols=154 Identities=20% Similarity=0.311 Sum_probs=124.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc-ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP-TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
||+++|++|||||||++++.+..+. .+.++.+. ....+..++ ..+.+||+||+..+...+..+++.+|++++|+|+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999987765 44554442 233455553 6789999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++++.....++..+.........|+++++||+|+.+ ....+++........ .+++++||
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S~ 143 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG-----------------CPFIETSA 143 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC-----------------CcEEEecc
Confidence 99999999999998887765546899999999999875 234455555554322 67999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
+++.|++++|++|.+.+
T Consensus 144 ~~~~~i~~l~~~l~~~i 160 (160)
T cd00876 144 KDNINIDEVFKLLVREI 160 (160)
T ss_pred CCCCCHHHHHHHHHhhC
Confidence 99999999999998764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >KOG0081|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-29 Score=166.84 Aligned_cols=156 Identities=22% Similarity=0.299 Sum_probs=136.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-------C----EEEEEEEcCCCccchhhHhhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-------D----IVFTTHDLGGHVQARRVWRDYF 86 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-------~----~~~~~~d~~g~~~~~~~~~~~~ 86 (194)
-++++.+|.+|+||||++.++.+++|. +...|+|.+. +.+-++ | ..+++|||+||++++++...++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf 88 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF 88 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence 357788999999999999999999987 6777777753 333332 1 5799999999999999999999
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++-+++++||++++.||-+++.|+.++..+....+.-+++++||+|+.+ .++.++.....++++
T Consensus 89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyg------------- 155 (219)
T KOG0081|consen 89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYG------------- 155 (219)
T ss_pred HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhC-------------
Confidence 99999999999999999999999999999998889999999999999976 567777888888877
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|||++||-+|.||++..+.++..+
T Consensus 156 ----lPYfETSA~tg~Nv~kave~Lldlv 180 (219)
T KOG0081|consen 156 ----LPYFETSACTGTNVEKAVELLLDLV 180 (219)
T ss_pred ----CCeeeeccccCcCHHHHHHHHHHHH
Confidence 8999999999999999999887643
|
|
| >KOG0095|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-28 Score=159.27 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=126.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
--+||+++|..|+|||+|++++..+-|+ -...|+|.+ +++++.++ .++++|||.|++++++....+++.++++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 4579999999999999999999998887 466677665 57788877 789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++...+|+-+.+|+.++-++. ..+..-|+|+||.|+.+. ..++++-+.+. ....+.|.+
T Consensus 86 vydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs----------------~~qdmyfle 148 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFS----------------EAQDMYFLE 148 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHH----------------Hhhhhhhhh
Confidence 999999999999999999997663 244556899999998663 22223333222 223367999
Q ss_pred eccccCCChHHHHHHHhh
Q psy2159 174 CSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~ 191 (194)
+||++..||+.+|..+.-
T Consensus 149 tsakea~nve~lf~~~a~ 166 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLAC 166 (213)
T ss_pred hcccchhhHHHHHHHHHH
Confidence 999999999999988753
|
|
| >cd00157 Rho Rho (Ras homology) family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-27 Score=165.23 Aligned_cols=153 Identities=20% Similarity=0.322 Sum_probs=115.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
+||+++|++|||||||++++.+..+. .+.+|..... ..+..++ ..+.+||+||++++......+++.+|++++|+|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999998874 4455544322 3334443 679999999999888888888899999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-------------HHHHHhhhcccCccCCCccCccccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-------------EDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-------------~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++.++......|...+... ..+.|+++|+||+|+.+... .++..+....
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------------- 144 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE--------------- 144 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH---------------
Confidence 999888888776544444332 24899999999999876432 2222322222
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.+...++++||++|+|++++|++|.+
T Consensus 145 -~~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 145 -IGAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred -hCCeEEEEeecCCCCCHHHHHHHHhh
Confidence 12248999999999999999999876
|
Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2e-26 Score=162.64 Aligned_cols=158 Identities=18% Similarity=0.216 Sum_probs=120.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+..+++++|++|||||||++++....+. .+.+|.+.. ...+...+ ..+.+||+||+..+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34579999999999999999999977665 455555533 34456666 56889999999999988888999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.++.....|+..+... ...+.|+++++||+|+.+... ..+..+.+.. ...+.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~----------------~~~~~~~ 147 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD----------------AQDMYYL 147 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH----------------HcCCeEE
Confidence 999999988898888887766443 234689999999999865221 1232233321 1126799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.|++++|++|.+.+
T Consensus 148 ~~Sa~~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 148 ETSAKESDNVEKLFLDLACRL 168 (169)
T ss_pred EeeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998753
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=161.32 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=108.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc----h-----hhHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA----R-----RVWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~----~-----~~~~~~~~~~d 90 (194)
+|+++|++|+|||||++++.+..+. ...+|.+.....+..++..+.+|||||+... + .........+|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 7899999999999999999998764 2234566666677777899999999998421 0 11111123468
Q ss_pred EEEEEEECCCCCCh--HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRF--PESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|+++..++ .....|+..+... ..+.|+++|+||+|+.......+..+.. ....
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~~~~~~-----------------~~~~ 142 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSEIEEEE-----------------ELEG 142 (168)
T ss_pred cEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHHHHHhh-----------------hhcc
Confidence 99999999987654 4445566655432 2479999999999997643333322222 1234
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++|||++|.|++++|+++.+.+
T Consensus 143 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 143 EEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred CceEEEEecccCCHHHHHHHHHHHh
Confidence 7899999999999999999998765
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >KOG0088|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=161.50 Aligned_cols=157 Identities=21% Similarity=0.307 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc--ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP--TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.-.+|++++|..-+|||||+-++..++|. +...|... ...++...+ ..+.||||.||++++++-+-||+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 45689999999999999999999999986 44444332 234555554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++|..||+.++.|..++... ....+.++||+||+|+.+ .+..+|...+.+..+ ..+
T Consensus 91 LVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvG-----------------A~y 152 (218)
T KOG0088|consen 91 LVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVG-----------------ALY 152 (218)
T ss_pred EEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhc-----------------hhh
Confidence 999999999999999999999764 345688899999999866 566777777777655 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||+++.||.++|+.+.+.+
T Consensus 153 ~eTSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 153 METSAKDNVGISELFESLTAKM 174 (218)
T ss_pred eecccccccCHHHHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-26 Score=167.49 Aligned_cols=157 Identities=20% Similarity=0.345 Sum_probs=126.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe----CCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM----GDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
....+|++++|++|||||||++++..+.+. .+.+|.+.......+ +...+.+||++|++++...+..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 456789999999999999999887777665 678888887655443 337899999999999988888889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++..++..+..|+..+.... .+.|+++++||+|+.+.....+.....+. ..+.++
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 146 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFHRK-----------------KNLQYY 146 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999998888876542 57899999999998653222232233322 226799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|.+|.+.+
T Consensus 147 e~Sa~~~~~v~~~f~~ia~~l 167 (215)
T PTZ00132 147 DISAKSNYNFEKPFLWLARRL 167 (215)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
|
| >cd04129 Rho2 Rho2 subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-26 Score=163.05 Aligned_cols=155 Identities=16% Similarity=0.249 Sum_probs=115.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.|++++|++|+|||||++++....+. .+.+|..... ..+..++ ..+.+||++|++.+.......++.+|++++|+
T Consensus 1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 358999999999999999999977765 4555554443 3445555 56899999999988777667788999999999
Q ss_pred ECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHhhhcccCccCCCccCcccc
Q psy2159 97 DASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 97 d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
|+++.++|..+.. |+..+... .++.|+++|+||+|+.++. ..++.....+.
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 144 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKE-------------- 144 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHH--------------
Confidence 9999999999875 55555433 2579999999999985421 11222222211
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++|||++|.|++++|+++.+.+
T Consensus 145 --~~~~~~~e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 145 --IGAKKYMECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred --hCCcEEEEccCCCCCCHHHHHHHHHHHH
Confidence 1124799999999999999999998653
|
Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). |
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.4e-26 Score=159.33 Aligned_cols=155 Identities=23% Similarity=0.322 Sum_probs=113.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCcc----chhhHhh---hhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQ----ARRVWRD---YFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~----~~~~~~~---~~~~~d~ 91 (194)
+|+++|.+|||||||++++.+.... ...+|..++.+.+.+++. .+.+|||||+.+ ....... .+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 6899999999999999999976542 234466667777777776 999999999742 1122222 2456999
Q ss_pred EEEEEECCCC-CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHH-hhhcccCccCCCccCcccccCCcc
Q psy2159 92 IVFIIDASDR-SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVR-HFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 92 ii~v~d~~~~-~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+++|+|++++ .++.....|...+.... ...++|+++|+||+|+.+.....+.. ..... ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~----------------~~~ 145 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKE----------------LWG 145 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhh----------------CCC
Confidence 9999999998 78888887777775542 12478999999999986643333322 22221 023
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||+++.|++++|+++.+.+
T Consensus 146 ~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 146 KPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred CCEEEEecCCCCCHHHHHHHHHhhC
Confidence 6789999999999999999998764
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >KOG0395|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=161.76 Aligned_cols=157 Identities=24% Similarity=0.333 Sum_probs=136.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+..+++++|.+|+|||+|..++..+.|. .+.||+...+ ..+..++ ..+.++||+|++++..+...++..+|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4579999999999999999999999997 6888887644 4555655 6889999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|++++..||+.+..++..+.........|+++|+||+|+.. .++.++......... .+|++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~-----------------~~f~E 144 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWG-----------------CAFIE 144 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcC-----------------CcEEE
Confidence 99999999999999999997766667789999999999976 677778777755433 56999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+.+.+|+++|..|++.+
T Consensus 145 ~Sak~~~~v~~~F~~L~r~~ 164 (196)
T KOG0395|consen 145 TSAKLNYNVDEVFYELVREI 164 (196)
T ss_pred eeccCCcCHHHHHHHHHHHH
Confidence 99999999999999998865
|
|
| >KOG0076|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=157.64 Aligned_cols=165 Identities=33% Similarity=0.593 Sum_probs=146.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCC--------CccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRT--------AQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
.+....++++|+.++|||||+.+...... ....||+|.+.+++..++..+.+||..|++..+++|..+|..+
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHHh
Confidence 46777899999999999999998765422 3577899999999999999999999999999999999999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+++|+++++.|+.....+.....+-...+.|+++.+||.|+.++....|+...++.. +....+..
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~-----------e~~~~rd~ 162 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLA-----------ELIPRRDN 162 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhh-----------hhcCCccC
Confidence 9999999999999999999999988887777899999999999999999999998888741 12556678
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.++||.+|+||++..+|+++.+
T Consensus 163 ~~~pvSal~gegv~egi~w~v~~~ 186 (197)
T KOG0076|consen 163 PFQPVSALTGEGVKEGIEWLVKKL 186 (197)
T ss_pred ccccchhhhcccHHHHHHHHHHHH
Confidence 899999999999999999998765
|
|
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-25 Score=154.74 Aligned_cols=151 Identities=18% Similarity=0.179 Sum_probs=105.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC---CC---ccccCCCcceeEEEeC-CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR---TA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~---~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.|+++|++|||||||++++.+.. +. ....|.+.....+.++ +..+.+|||||++++......+++++|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68899999999999999999643 22 1233555555566666 78999999999998877777778899999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+++.. .......+..+ ... ..+|+++++||+|+..... .+++.+.+... .....++
T Consensus 82 ~d~~~~~-~~~~~~~~~~~-~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 143 (164)
T cd04171 82 VAADEGI-MPQTREHLEIL-ELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT--------------FLADAPI 143 (164)
T ss_pred EECCCCc-cHhHHHHHHHH-HHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc--------------CcCCCcE
Confidence 9997732 12222222222 211 2349999999999865321 12333333221 1124689
Q ss_pred EEeccccCCChHHHHHHHhh
Q psy2159 172 FMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+++||++|.|++++++++.+
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999999864
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-24 Score=157.93 Aligned_cols=153 Identities=21% Similarity=0.304 Sum_probs=112.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccc---------hhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQA---------RRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~---------~~~~~~~ 85 (194)
...++|+++|++|||||||++++.+..+. .+.+|..+....+.+++. .+.+||+||..+. ...+ ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~~ 117 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTL-EE 117 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHH-HH
Confidence 44579999999999999999999998643 356677777777777664 8999999997431 1111 23
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+..+|++++|+|++++.++.....+...+ ......+.|+++|+||+|+.+..... ... .
T Consensus 118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l-~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~-----------------~ 176 (204)
T cd01878 118 VAEADLLLHVVDASDPDYEEQIETVEKVL-KELGAEDIPMILVLNKIDLLDDEELE---ERL-----------------E 176 (204)
T ss_pred HhcCCeEEEEEECCCCChhhHHHHHHHHH-HHcCcCCCCEEEEEEccccCChHHHH---HHh-----------------h
Confidence 56799999999999988777655444433 33333578999999999986632221 111 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||+++.|+++++++|.+.|
T Consensus 177 ~~~~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 177 AGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence 2236799999999999999999998764
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-25 Score=168.41 Aligned_cols=155 Identities=20% Similarity=0.292 Sum_probs=117.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCcc-------chhhHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ-------ARRVWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 90 (194)
..|.++|.|+||||||++++...+.. ..++|..++...+.+ ++..+.+||+||..+ ....+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47889999999999999999976532 356789999999988 557899999999753 1122334566799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHH--HHHhhhcccCccCCCccCcccccCCc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASED--EVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~--e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++++|+|+++.++++....|..++..+. ...++|+++|+||+|+.+..... +.....+. .
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~-----------------~ 301 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAA-----------------L 301 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHh-----------------c
Confidence 9999999998878888888877775542 23578999999999987532221 12222211 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++++||++++|+++++++|.+.+
T Consensus 302 ~~~i~~iSAktg~GI~eL~~~L~~~l 327 (335)
T PRK12299 302 GGPVFLISAVTGEGLDELLRALWELL 327 (335)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 26799999999999999999998765
|
|
| >KOG0393|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-26 Score=161.41 Aligned_cols=168 Identities=19% Similarity=0.309 Sum_probs=130.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeC-C--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMG-D--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~-~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+|++++|..++|||+++-.+..+.|+ .+.||+-.++ ..+..+ + +.+.+|||.||++|.++++..|.++|.+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4679999999999999999999999988 6888887654 456664 5 689999999999999999889999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
||++.++.||+++. .|+.++..+ .++.|+|+||+|.||+++... +++... ........++...+...+. ..|+
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~-~~~~Vt~~~g~~lA~~iga--~~y~ 157 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQ-GLEPVTYEQGLELAKEIGA--VKYL 157 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhc-cCCcccHHHHHHHHHHhCc--ceee
Confidence 99999999999986 566655443 389999999999999854311 111111 1222233344444444444 7899
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+|||+++.|+.++|+..+..
T Consensus 158 EcSa~tq~~v~~vF~~a~~~ 177 (198)
T KOG0393|consen 158 ECSALTQKGVKEVFDEAIRA 177 (198)
T ss_pred eehhhhhCCcHHHHHHHHHH
Confidence 99999999999999987764
|
|
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=154.96 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=106.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC-------CC-ccccCC------Ccce----eEEEe-----CCEEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR-------TA-QHMPTL------HPTS----EELSM-----GDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~-------~~-~~~~t~------~~~~----~~~~~-----~~~~~~~~d~~g~~~~~ 79 (194)
+|+++|++++|||||++++.+.. +. .+.++. +.+. ..+.+ .+..+.+|||||+.++.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68899999999999999998742 11 222222 2221 12222 34788999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
..+..+++.+|++++|+|+++..++.....+.. +.. .++|+++++||+|+.... ..+..+.+...
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~-~~~----~~~~iiiv~NK~Dl~~~~-~~~~~~~~~~~--------- 146 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYL-ALE----NNLEIIPVINKIDLPSAD-PERVKQQIEDV--------- 146 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHH-HHH----cCCCEEEEEECCCCCcCC-HHHHHHHHHHH---------
Confidence 998999999999999999998766655544432 222 468999999999986532 22222222111
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.....++++||++|.|++++|++|.+.+
T Consensus 147 ----~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 147 ----LGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred ----hCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 111224589999999999999999998876
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-24 Score=167.62 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccc-hhh-------Hhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQA-RRV-------WRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~-~~~-------~~~~~ 86 (194)
.+..+|+++|.+|||||||+|++.+.++..+.+ |.+...+.+..++..+.+|||||+.+. ..+ ....+
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 345689999999999999999999988754333 444445667788899999999998532 211 12246
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.++|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...++.+.+... .
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~~---------------~ 188 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTEN---------------H 188 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHhc---------------C
Confidence 78999999999766 566665544444333 35678899999998653 344555554321 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++||++|.|+++++++|.+.+
T Consensus 189 ~~~~i~~iSAktg~gv~eL~~~L~~~l 215 (339)
T PRK15494 189 PDSLLFPISALSGKNIDGLLEYITSKA 215 (339)
T ss_pred CCcEEEEEeccCccCHHHHHHHHHHhC
Confidence 236799999999999999999998865
|
|
| >KOG0083|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.2e-27 Score=152.40 Aligned_cols=150 Identities=23% Similarity=0.346 Sum_probs=127.9
Q ss_pred EEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++|.+++|||+|+-++.++.|- ...+|+|.+.. .++.++ +++++|||.||+++++....+++++|+.++++|+.
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia 81 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA 81 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence 6799999999999998888775 46667777653 345554 79999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+..||++...|+.++.++. .....+++++||+|+.+ .+..++-++..+.++ ++|.++||+
T Consensus 82 nkasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~-----------------ipfmetsak 143 (192)
T KOG0083|consen 82 NKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYG-----------------IPFMETSAK 143 (192)
T ss_pred cchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHHHC-----------------CCceecccc
Confidence 9999999999999987652 35678899999999954 566677777777766 899999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.||+..|-.|.+.+
T Consensus 144 tg~nvd~af~~ia~~l 159 (192)
T KOG0083|consen 144 TGFNVDLAFLAIAEEL 159 (192)
T ss_pred ccccHhHHHHHHHHHH
Confidence 9999999999887754
|
|
| >KOG0097|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=143.00 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=132.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.-++.+++|.-|+|||+|+..+..++|. ...+|++...+ .++..| .++++||+.|+++++...+.+++++.+.++
T Consensus 10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm 89 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 89 (215)
T ss_pred heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence 3468899999999999999999999886 66667777543 455555 789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++...++..+..|+.+.... ..++..+++++||.|+.. ++..+|.+.+.+.-+ ..|.
T Consensus 90 vyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeeng-----------------l~fl 151 (215)
T KOG0097|consen 90 VYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENG-----------------LMFL 151 (215)
T ss_pred EEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcC-----------------eEEE
Confidence 99999999999999999887654 447788899999999865 788999999887755 7899
Q ss_pred EeccccCCChHHHHHHHhhh
Q psy2159 173 MCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++||++|++|++.|-...++
T Consensus 152 e~saktg~nvedafle~akk 171 (215)
T KOG0097|consen 152 EASAKTGQNVEDAFLETAKK 171 (215)
T ss_pred EecccccCcHHHHHHHHHHH
Confidence 99999999999988655443
|
|
| >cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=155.94 Aligned_cols=169 Identities=20% Similarity=0.285 Sum_probs=126.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcC-CEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV-DAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~-d~ii~v~d 97 (194)
+|+++|++|||||||++++....+..+.++..++....... +..+.+||+||+.+++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 68899999999999999999998876656555555554443 57899999999999998888889998 99999999
Q ss_pred CCCC-CChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCc-------------cCCC-----
Q psy2159 98 ASDR-SRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL-------------TTGK----- 156 (194)
Q Consensus 98 ~~~~-~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~-------------~~~~----- 156 (194)
+++. .++.....++..++... ..++.|+++++||+|+....+.+.+++.++.+.. ....
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 67777777777765432 2368999999999999886666666555543210 0000
Q ss_pred -----ccCcccccCCcceEEEEeccccCC-ChHHHHHHHhh
Q psy2159 157 -----EFTPREILQMRPMELFMCSVLKRQ-GFGNGFRWLAN 191 (194)
Q Consensus 157 -----~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~ 191 (194)
+..+........+.|+++|++.+. |++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 112223333457889999998876 69999999865
|
SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ |
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-24 Score=164.54 Aligned_cols=157 Identities=20% Similarity=0.293 Sum_probs=117.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccc----hhh---HhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQA----RRV---WRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~~---~~~~~~~~d 90 (194)
..|+++|.|+||||||++++...+.. ..++|..++...+.+++ ..+.+||+||..+. ..+ +..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 47889999999999999999986532 35678889999999887 89999999997532 122 333456799
Q ss_pred EEEEEEECCCC---CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASDR---SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++++|+|+++. .+++....|..++.... ...++|+++|+||+|+......+++.+.+...
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~---------------- 301 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKA---------------- 301 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHH----------------
Confidence 99999999876 56777766666664432 23578999999999997643333333333210
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..++++++||++++|++++++++.+.++
T Consensus 302 ~~~~vi~iSAktg~GI~eL~~~I~~~l~ 329 (329)
T TIGR02729 302 LGKPVFPISALTGEGLDELLYALAELLE 329 (329)
T ss_pred cCCcEEEEEccCCcCHHHHHHHHHHHhC
Confidence 1257999999999999999999998764
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=148.59 Aligned_cols=134 Identities=20% Similarity=0.273 Sum_probs=95.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc-----cchhhHhhhhhcCCEEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV-----QARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-----~~~~~~~~~~~~~d~ii~v~d 97 (194)
||+++|++|+|||||++++.+..+. +.+|.+ +++.+ .+||+||+. .+..... .++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~-----~~~~~---~~iDt~G~~~~~~~~~~~~~~-~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQA-----VEYND---GAIDTPGEYVENRRLYSALIV-TAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-ccccee-----EEEcC---eeecCchhhhhhHHHHHHHHH-HhhcCCEEEEEec
Confidence 7999999999999999999987653 233332 23333 789999983 2333333 4789999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
++++.++... . |.... ..|+++++||+|+.+ ....++..+.++... ..+++++||
T Consensus 72 ~~~~~s~~~~-~-~~~~~------~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~Sa 127 (142)
T TIGR02528 72 ATDPESRFPP-G-FASIF------VKPVIGLVTKIDLAEADVDIERAKELLETAG----------------AEPIFEISS 127 (142)
T ss_pred CCCCCcCCCh-h-HHHhc------cCCeEEEEEeeccCCcccCHHHHHHHHHHcC----------------CCcEEEEec
Confidence 9998887652 2 22221 249999999999865 333444444443321 136899999
Q ss_pred ccCCChHHHHHHHh
Q psy2159 177 LKRQGFGNGFRWLA 190 (194)
Q Consensus 177 ~~~~~v~~l~~~l~ 190 (194)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999974
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=149.10 Aligned_cols=157 Identities=19% Similarity=0.185 Sum_probs=109.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc---ccCCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH---MPTLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.|+++|++|+|||||++++....+... .+|.......+... +..+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 488999999999999999998876542 33444444455553 678999999999998888888889999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++... ......+..+ .. .++|+++++||+|+.... .+.+...+....... .. .....++++++||
T Consensus 82 d~~~~~~-~~~~~~~~~~-~~---~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~Sa 148 (168)
T cd01887 82 AADDGVM-PQTIEAIKLA-KA---ANVPFIVALNKIDKPNAN-PERVKNELSELGLQG------ED-EWGGDVQIVPTSA 148 (168)
T ss_pred ECCCCcc-HHHHHHHHHH-HH---cCCCEEEEEEceeccccc-HHHHHHHHHHhhccc------cc-cccCcCcEEEeec
Confidence 9987542 2222222222 22 578999999999986532 233333332211000 00 0123468999999
Q ss_pred ccCCChHHHHHHHhhh
Q psy2159 177 LKRQGFGNGFRWLANY 192 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~ 192 (194)
++|.|+++++++|.+.
T Consensus 149 ~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 149 KTGEGIDDLLEAILLL 164 (168)
T ss_pred ccCCCHHHHHHHHHHh
Confidence 9999999999999875
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >cd04102 RabL3 RabL3 (Rab-like3) subfamily | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.2e-24 Score=153.88 Aligned_cols=115 Identities=17% Similarity=0.316 Sum_probs=98.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC-------CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG-------DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~-------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
+||+++|.+|+|||||++++....+. .+.+|++.+. ..+.++ ...+.+||++|++++..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 48999999999999999999998876 5777887543 334442 2689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCC------------------CCCCCcEEEEeeCCCCCC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADD------------------ALTDVPILILGNKIDIFD 136 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~------------------~~~~~piiiv~nK~D~~~ 136 (194)
+++|+|+++..||+++..|+.++.... ...+.|+++|+||+|+.+
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 999999999999999999999887532 234689999999999865
|
RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown. |
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-23 Score=162.72 Aligned_cols=151 Identities=23% Similarity=0.309 Sum_probs=112.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCcc---------chhhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ---------ARRVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~---------~~~~~~~~~ 86 (194)
..++|+++|.+++|||||+|++.+..+. ..++|.++....+.+ ++..+.+|||+|..+ +.+. ...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~t-le~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRAT-LEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHH-HHHH
Confidence 3479999999999999999999997642 467888888888888 568999999999722 2222 2247
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.++|++++|+|++++.++.....+. .++......++|+++|+||+|+.+. +++.....
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~-~~L~~l~~~~~piIlV~NK~Dl~~~---~~v~~~~~------------------ 324 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVE-KVLEELGAEDIPQLLVYNKIDLLDE---PRIERLEE------------------ 324 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHH-HHHHHhccCCCCEEEEEEeecCCCh---HhHHHHHh------------------
Confidence 7899999999999988776654433 3333323357899999999998652 22221110
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~i~iSAktg~GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 GYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence 013579999999999999999998753
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=150.80 Aligned_cols=153 Identities=25% Similarity=0.299 Sum_probs=110.6
Q ss_pred EEcCCCCChHHHHHHHHcCCC--C-ccccCCCcceeEEEeC-CEEEEEEEcCCCccc----hhh---HhhhhhcCCEEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRT--A-QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQA----RRV---WRDYFPAVDAIVF 94 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~--~-~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~----~~~---~~~~~~~~d~ii~ 94 (194)
++|++|||||||++++.+... . ...+|..++...+.++ +..+.+||+||..+. ... +...++.+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 579999999999999998864 2 3455677777778888 899999999997431 122 2334678999999
Q ss_pred EEECCCC------CChHHHHHHHHHHHhCCC------CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 95 IIDASDR------SRFPESKYELDNLLADDA------LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 95 v~d~~~~------~~~~~~~~~~~~~~~~~~------~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
|+|+++. .++.....+...+..... ..++|+++|+||+|+.......+......
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~-------------- 146 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVREL-------------- 146 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHH--------------
Confidence 9999987 456666666666654432 24799999999999976433333210111
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......++++||+++.|++++++++.+.+
T Consensus 147 -~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 147 -ALEEGAEVVPISAKTEEGLDELIRAIYELL 176 (176)
T ss_pred -hcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence 122336699999999999999999998753
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-23 Score=144.20 Aligned_cols=153 Identities=22% Similarity=0.313 Sum_probs=115.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..||+++|++|||||||++++....+. .+.++.+.+. ..+..++ ..+.+||+||+..+...+..+...++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 368999999999999999999998854 3444444443 3366777 7899999999999998888888899999999
Q ss_pred EECCCC-CChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDR-SRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|.... .++.... .+...+..... .+.|+++++||+|+......++....+... ...++++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----------------~~~~~~~ 143 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAKLKTHVAFLFAKL----------------NGEPIIP 143 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcchhhHHHHHHHhhc----------------cCCceEE
Confidence 998776 5565555 44444443322 278999999999997643344444444332 2245999
Q ss_pred eccccCCChHHHHHHHh
Q psy2159 174 CSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~ 190 (194)
+||++|.|+.+++++|.
T Consensus 144 ~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 144 LSAETGKNIDSAFKIVE 160 (161)
T ss_pred eecCCCCCHHHHHHHhh
Confidence 99999999999999874
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=148.49 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=114.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccc-------------------cCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHM-------------------PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|.+|+|||||++++.+....... .|.......+...+..+.+||+||+..+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4789999999999999999987665221 233334455666778999999999998888888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhhhcccCccCCCccC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE----VRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e----~~~~~~~~~~~~~~~~~ 159 (194)
.+++.+|++++|+|++++.+.. ....+..... .+.|+++++||+|+........ +.+.++....... .
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQ-TREHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIST---K 152 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccch---h
Confidence 8899999999999998865433 2333333322 5799999999999976333333 3333332110000 0
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-.........+++++||++|.|++++++++.+.+
T Consensus 153 ~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred hhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence 0000122457899999999999999999999876
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-23 Score=156.39 Aligned_cols=150 Identities=19% Similarity=0.198 Sum_probs=103.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d 90 (194)
+|+++|.+|||||||+|++.+.+++.+.+ |.....+....++..+.+|||||...... ....++.++|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999987653332 33322333445567899999999754311 1334578899
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|+++..+.. .++...+.. .+.|+++|+||+|+.+. +++........ ......+
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~------------~~~~~~~ 140 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFK---DKLLPLIDKYA------------ILEDFKD 140 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCH---HHHHHHHHHHH------------hhcCCCc
Confidence 999999999866554 333333333 46899999999998642 22222221111 0011237
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++++++.+.+
T Consensus 141 v~~iSA~~g~gi~~L~~~l~~~l 163 (270)
T TIGR00436 141 IVPISALTGDNTSFLAAFIEVHL 163 (270)
T ss_pred eEEEecCCCCCHHHHHHHHHHhC
Confidence 89999999999999999998865
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=144.59 Aligned_cols=141 Identities=22% Similarity=0.339 Sum_probs=104.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc------hhhHhhhh--hcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA------RRVWRDYF--PAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~--~~~d 90 (194)
++|+++|.|+||||||+|++++.+.. .+..|+....+.+.+++..+.++|+||.-.. ......++ ...|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 47999999999999999999998843 3555777777889999999999999994322 22333443 5799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+++.|+|+++ ++.......++++ .++|+++++||+|+.+ ....+.+.+.++
T Consensus 81 ~ii~VvDa~~---l~r~l~l~~ql~e----~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg------------------ 135 (156)
T PF02421_consen 81 LIIVVVDATN---LERNLYLTLQLLE----LGIPVVVVLNKMDEAERKGIEIDAEKLSERLG------------------ 135 (156)
T ss_dssp EEEEEEEGGG---HHHHHHHHHHHHH----TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHT------------------
T ss_pred EEEEECCCCC---HHHHHHHHHHHHH----cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhC------------------
Confidence 9999999988 4455555666655 4799999999999755 334555666553
Q ss_pred cceEEEEeccccCCChHHHHHHH
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
++++++||++++|+++++++|
T Consensus 136 --~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 136 --VPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp --S-EEEEBTTTTBTHHHHHHHH
T ss_pred --CCEEEEEeCCCcCHHHHHhhC
Confidence 789999999999999999875
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-23 Score=142.12 Aligned_cols=143 Identities=22% Similarity=0.223 Sum_probs=106.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 89 (194)
++|+++|++|+|||||++++.+...... ..|.......+...+..+.+||+||..+... .....+..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 4899999999999999999998765422 2233333455667788999999999765432 123456789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.+......+.. ..+.|+++++||+|+.+.... . ......
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----~-----------------~~~~~~ 132 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----L-----------------SLLAGK 132 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----c-----------------cccCCC
Confidence 99999999998776666543322 367999999999998763322 1 122236
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||+++.|+++++++|.+.+
T Consensus 133 ~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 133 PIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh
Confidence 799999999999999999998765
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >cd00882 Ras_like_GTPase Ras-like GTPase superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-23 Score=142.42 Aligned_cols=149 Identities=23% Similarity=0.314 Sum_probs=114.7
Q ss_pred EEcCCCCChHHHHHHHHcCCC-C-ccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRT-A-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++|++|+|||||++++.+... . ...+|. ......... +..+.+||+||+......+...++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998877 3 444554 555444443 578999999999988887788889999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH--hhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVR--HFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
++.++.....++..........+.|+++++||+|+......+... ... ......+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~s~~ 143 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQL----------------AKELGVPYFETSAK 143 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHH----------------HhhcCCcEEEEecC
Confidence 988888887774444445556789999999999987644333321 111 12233789999999
Q ss_pred cCCChHHHHHHHhh
Q psy2159 178 KRQGFGNGFRWLAN 191 (194)
Q Consensus 178 ~~~~v~~l~~~l~~ 191 (194)
++.|+++++++|.+
T Consensus 144 ~~~~i~~~~~~l~~ 157 (157)
T cd00882 144 TGENVEELFEELAE 157 (157)
T ss_pred CCCChHHHHHHHhC
Confidence 99999999999864
|
The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb |
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-23 Score=143.52 Aligned_cols=144 Identities=24% Similarity=0.286 Sum_probs=103.8
Q ss_pred EEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhhh--cCCEEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYFP--AVDAIVF 94 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~~--~~d~ii~ 94 (194)
++|.+|+|||||++++.+..+. . ...|.......+.+++..+.+|||||+.++.. .+..++. .+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 5799999999999999987633 2 33355566677888888999999999876553 3455554 8999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|.++.+. ...++..+.. .++|+++++||+|+.+..... +........ ..++++
T Consensus 81 v~d~~~~~~---~~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~ 136 (158)
T cd01879 81 VVDATNLER---NLYLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKLSELL-----------------GVPVVP 136 (158)
T ss_pred EeeCCcchh---HHHHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHHHHhh-----------------CCCeEE
Confidence 999987543 2334444432 468999999999997632221 222222211 257999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++++++.+..
T Consensus 137 iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred EEccCCCCHHHHHHHHHHHh
Confidence 99999999999999998754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.1e-23 Score=147.30 Aligned_cols=157 Identities=17% Similarity=0.139 Sum_probs=105.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC----CCC------ccccCCCcceeEEEeC--------------CEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND----RTA------QHMPTLHPTSEELSMG--------------DIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~----~~~------~~~~t~~~~~~~~~~~--------------~~~~~~~d~~g~~~ 77 (194)
++|+++|++++|||||++++... .+. ....|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 47999999999999999999973 111 1234555554444443 67899999999976
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCcc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLT 153 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~ 153 (194)
+........+.+|++++|+|+++.........+. +... .+.|+++++||+|+...... +++.+.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~-- 153 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTL-- 153 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHH--
Confidence 6554445567789999999998754433322221 1222 35799999999998753222 22333221110
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......++++++||++|+|++++++++.+++
T Consensus 154 --------~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 154 --------EKTRFKNSPIIPVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred --------HhcCcCCCCEEEEeccCCCCHHHHHHHHHhcc
Confidence 00112347899999999999999999999886
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >PLN00023 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-23 Score=156.38 Aligned_cols=133 Identities=20% Similarity=0.312 Sum_probs=109.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC---------------CEEEEEEEcCCCccch
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG---------------DIVFTTHDLGGHVQAR 79 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~~~~~d~~g~~~~~ 79 (194)
....+||+++|..|||||||++++....+. .+.+|++.+. ..+.++ .+.+.+||++|++++.
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence 446789999999999999999999998876 5778888764 444543 2679999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC-----------CCCCcEEEEeeCCCCCCC--------CCH
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA-----------LTDVPILILGNKIDIFDA--------ASE 140 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-----------~~~~piiiv~nK~D~~~~--------~~~ 140 (194)
.++..+++++|++|+|+|+++..+|..+..|+..+..... ..+.|++||+||+|+... ...
T Consensus 98 sL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~ 177 (334)
T PLN00023 98 DCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLV 177 (334)
T ss_pred hhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccH
Confidence 9999999999999999999999999999999998876531 135899999999998652 135
Q ss_pred HHHHhhhccc
Q psy2159 141 DEVRHFFGLY 150 (194)
Q Consensus 141 ~e~~~~~~~~ 150 (194)
++.+++.+..
T Consensus 178 e~a~~~A~~~ 187 (334)
T PLN00023 178 DAARQWVEKQ 187 (334)
T ss_pred HHHHHHHHHc
Confidence 6666666553
|
|
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=152.20 Aligned_cols=158 Identities=20% Similarity=0.289 Sum_probs=98.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCC-----------CccchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~ 86 (194)
.+..+|+++|.+|+|||||++++.+..+. ...|+.......+..+ .+.+||||| ++.++..+..++
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 35679999999999999999999987654 2233222222333333 689999999 345555555554
Q ss_pred h----cCCEEEEEEECCCCCCh----H-----HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhhhcccC
Q psy2159 87 P----AVDAIVFIIDASDRSRF----P-----ESKYELDNLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYG 151 (194)
Q Consensus 87 ~----~~d~ii~v~d~~~~~~~----~-----~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~ 151 (194)
. .++++++|+|.+..... . .....+...+.. .++|+++|+||+|+.+.. ..+++.+.++...
T Consensus 85 ~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~ 161 (201)
T PRK04213 85 EDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP 161 (201)
T ss_pred HhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence 3 45788889887652211 0 011112222222 478999999999986532 1223333332100
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......+++++||++| |+++++++|.+.+
T Consensus 162 -----------~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~ 191 (201)
T PRK04213 162 -----------PWRQWQDIIAPISAKKG-GIEELKEAIRKRL 191 (201)
T ss_pred -----------cccccCCcEEEEecccC-CHHHHHHHHHHhh
Confidence 00000136899999999 9999999998865
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-22 Score=164.42 Aligned_cols=157 Identities=17% Similarity=0.166 Sum_probs=111.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc----------chhhH-hh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRVW-RD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~~-~~ 84 (194)
...+|+++|.+++|||||+|++.+..... ...|.+.....+.+++..+.+|||||..+ +.... ..
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~ 289 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHA 289 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHH
Confidence 46899999999999999999999886532 23344444567778888999999999632 22222 23
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++.+|++++|+|+++..++.... ++..+.. .++|+++|+||+|+.+.....+....+.... .
T Consensus 290 ~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l------------~ 352 (472)
T PRK03003 290 AIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDREL------------A 352 (472)
T ss_pred HHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhc------------c
Confidence 578999999999999987776653 3443332 5789999999999975322222222222111 1
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++||++|.|++++|+.+.+.+
T Consensus 353 ~~~~~~~~~~SAk~g~gv~~lf~~i~~~~ 381 (472)
T PRK03003 353 QVPWAPRVNISAKTGRAVDKLVPALETAL 381 (472)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 11235789999999999999999998754
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-23 Score=142.23 Aligned_cols=145 Identities=22% Similarity=0.258 Sum_probs=102.4
Q ss_pred EEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcCCEE
Q psy2159 25 LFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAVDAI 92 (194)
Q Consensus 25 ~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~d~i 92 (194)
+++|.+|+|||||++++.+.... ....|..........++..+.+|||||+..... .+...++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 47899999999999999987532 122233444566777889999999999887543 334567889999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|..+..+... ..+...+.. .+.|+++++||+|+.+.... ...+.... ..+++
T Consensus 81 i~v~d~~~~~~~~~--~~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~~----------------~~~~~ 136 (157)
T cd01894 81 LFVVDGREGLTPAD--EEIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSLG----------------FGEPI 136 (157)
T ss_pred EEEEeccccCCccH--HHHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhcC----------------CCCeE
Confidence 99999987543333 233333333 35899999999998763211 22221111 12579
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+++
T Consensus 137 ~~Sa~~~~gv~~l~~~l~~~~ 157 (157)
T cd01894 137 PISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEecccCCCHHHHHHHHHhhC
Confidence 999999999999999998864
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.8e-23 Score=163.98 Aligned_cols=155 Identities=24% Similarity=0.298 Sum_probs=112.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCcc----chh---hHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ----ARR---VWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----~~~---~~~~~~~~~d~ 91 (194)
..|+++|.|+||||||+++|.+.+.. .+++|..++...+.+++..+.+||+||..+ ... .+..++..+|+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhieradv 239 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAV 239 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcCE
Confidence 47899999999999999999976543 467789999999999999999999999642 111 12334678999
Q ss_pred EEEEEECCCC----CChHHHHHHHHHHHhCC----------CCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCC
Q psy2159 92 IVFIIDASDR----SRFPESKYELDNLLADD----------ALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGK 156 (194)
Q Consensus 92 ii~v~d~~~~----~~~~~~~~~~~~~~~~~----------~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~ 156 (194)
+++|+|+++. ..+.....+..++.... ...++|++||+||+|+++..... .+...+..
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~------- 312 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEA------- 312 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-------
Confidence 9999999763 23444444333443221 23578999999999986532221 22222221
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++++||++++|+++++++|.+.+
T Consensus 313 ----------~g~~Vf~ISA~tgeGLdEL~~~L~ell 339 (500)
T PRK12296 313 ----------RGWPVFEVSAASREGLRELSFALAELV 339 (500)
T ss_pred ----------cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 136899999999999999999998765
|
|
| >cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=145.14 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=100.9
Q ss_pred eEEEEcCCCCChHHHHHHHHc--CCCCccc-------------cCCCc----ceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN--DRTAQHM-------------PTLHP----TSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~--~~~~~~~-------------~t~~~----~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|.+++|||||++++.. ..+.... .+.+. ....+..++..+.+|||||++++...+.
T Consensus 4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 83 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE 83 (194)
T ss_pred EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence 789999999999999999997 4443211 12222 2345667789999999999999999999
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+++.+|++++|+|+++.. +.....++..... .++|+++++||+|+..... .+++.+.+....
T Consensus 84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~--------- 149 (194)
T cd01891 84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELG--------- 149 (194)
T ss_pred HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhC---------
Confidence 9999999999999998742 3444444444332 4789999999999865322 233333332111
Q ss_pred ccccCCcceEEEEeccccCCChH
Q psy2159 161 REILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
.......++++++||++|.|+.
T Consensus 150 -~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 150 -ATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred -CccccCccCEEEeehhcccccc
Confidence 0012224689999999997653
|
BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co |
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-22 Score=140.57 Aligned_cols=156 Identities=16% Similarity=0.165 Sum_probs=107.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 84 (194)
++++|+++|.+|+|||||++++.+..... ...+.......+..++..+.+||+||..+... ....
T Consensus 1 ~~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence 36789999999999999999999876431 22223333345667788899999999753310 1123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.+..+|++++|+|.+++.+.... ..+..... .+.|+++++||+|+.+. ...+++.+.+....
T Consensus 81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----------- 144 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL----------- 144 (174)
T ss_pred HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhc-----------
Confidence 46789999999999987665443 22222222 46899999999998764 33444444443321
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||+++.|++++++++.+.
T Consensus 145 -~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 -PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 11123679999999999999999998764
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=159.52 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=112.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC-CEEEEEEEcCCCcc----chhhHh---hhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQ----ARRVWR---DYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~----~~~~~~---~~~~~~d~ 91 (194)
.|+++|.|+||||||++++++.+.. .+++|..++...+.++ +..+.+||+||..+ ...+.. .+++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 7899999999999999999987632 4677888888888887 78999999999753 222323 33566999
Q ss_pred EEEEEECCCC---CChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDR---SRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~---~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|+++. .+++....+..++..+. ...++|++||+||+|+... .+.+....+...
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~---------------- 301 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLG---------------- 301 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhC----------------
Confidence 9999999864 45666666666654432 2357999999999998432 223333322211
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++++|+++++++|.+.+
T Consensus 302 -~~i~~iSA~tgeGI~eL~~~L~~~l 326 (424)
T PRK12297 302 -PKVFPISALTGQGLDELLYAVAELL 326 (424)
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998765
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.5e-22 Score=162.45 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=107.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCcc--------chhhHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~ 87 (194)
+..+|+++|.+|||||||+|++.+.....+.++.+.+ ...+..++..+.+|||||++. +...+..+++
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 4468999999999999999999988765444444443 445667788999999999763 2334455788
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+.... . +....... . .
T Consensus 117 ~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~-~-~~~~~~~~-g------------~--- 173 (472)
T PRK03003 117 TADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGE-A-DAAALWSL-G------------L--- 173 (472)
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccc-h-hhHHHHhc-C------------C---
Confidence 9999999999998765543 233333332 579999999999986421 1 11111111 1 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..+++||++|.|++++|+++.+.+
T Consensus 174 -~~~~~iSA~~g~gi~eL~~~i~~~l 198 (472)
T PRK03003 174 -GEPHPVSALHGRGVGDLLDAVLAAL 198 (472)
T ss_pred -CCeEEEEcCCCCCcHHHHHHHHhhc
Confidence 1247999999999999999998765
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=161.33 Aligned_cols=145 Identities=19% Similarity=0.253 Sum_probs=109.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~ 86 (194)
...++|+++|.+|+|||||+|++.+.+.. ....|.+.....+..++..+.+|||||..+.... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 45689999999999999999999987643 2334555556778888999999999998754321 23357
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|++++.++..... |.. ..+.|+++|+||+|+.+..... ..
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------~~----------------- 342 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------EE----------------- 342 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------hc-----------------
Confidence 88999999999999877664332 222 3578999999999986532221 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 343 ~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 343 NGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred cCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 115689999999999999999998764
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=146.11 Aligned_cols=157 Identities=20% Similarity=0.256 Sum_probs=113.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEE--eCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELS--MGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 76 (194)
+..+|+++|+.++|||||+++|...... . ..-|.......+. .++..+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4568999999999999999999965421 0 2224555566677 778999999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh-----cccC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF-----GLYG 151 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~-----~~~~ 151 (194)
.+.......++.+|++++|+|+.+.. -......+..+.. .+.|+++++||+|+.. ...++..+.+ +...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~-~~~~~~~l~~~~~----~~~p~ivvlNK~D~~~-~~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGI-QPQTEEHLKILRE----LGIPIIVVLNKMDLIE-KELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBS-THHHHHHHHHHHH----TT-SEEEEEETCTSSH-HHHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccc-ccccccccccccc----cccceEEeeeeccchh-hhHHHHHHHHHHHhccccc
Confidence 98888888899999999999998753 2333444444433 5788999999999873 1222222222 1111
Q ss_pred ccCCCccCcccccCC-cceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 152 LTTGKEFTPREILQM-RPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
... ..++++++||.+|.|+++|++.|.+.++
T Consensus 156 ------------~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ------------ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp ------------STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ------------cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 122 3589999999999999999999998764
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >PTZ00099 rab6; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=143.13 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=105.1
Q ss_pred ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC
Q psy2159 48 QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 48 ~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (194)
.+.||++.+.. .+.+++ ..+.+|||+|++++...+..+++++|++++|||++++.+|..+..|+..+.... .++.
T Consensus 8 ~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~ 86 (176)
T PTZ00099 8 NYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDV 86 (176)
T ss_pred CCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCC
Confidence 57788887653 355555 789999999999999999999999999999999999999999999988887653 3578
Q ss_pred cEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 124 PILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 124 piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|+++|+||+|+.. ....++.....+... +.+++|||++|.||+++|++|.+.+
T Consensus 87 piilVgNK~DL~~~~~v~~~e~~~~~~~~~-----------------~~~~e~SAk~g~nV~~lf~~l~~~l 141 (176)
T PTZ00099 87 IIALVGNKTDLGDLRKVTYEEGMQKAQEYN-----------------TMFHETSAKAGHNIKVLFKKIAAKL 141 (176)
T ss_pred eEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999864 345555555543322 5789999999999999999998765
|
|
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=141.13 Aligned_cols=140 Identities=19% Similarity=0.217 Sum_probs=96.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccch----hhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR----RVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~~~~~~~~~~d~ii~v~d~ 98 (194)
+|+++|++|+|||||+|++.+.... . .....+.+... .+||+||+.... ......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~-----~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-A-----RKTQAVEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-C-----ccceEEEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999998865311 1 12222333332 369999973222 2222336789999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++..++.. .++..+ ..++|+++++||+|+.+ ...+++.+.++... ...+++++||++
T Consensus 75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~-~~~~~~~~~~~~~~---------------~~~p~~~~Sa~~ 131 (158)
T PRK15467 75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPD-ADVAATRKLLLETG---------------FEEPIFELNSHD 131 (158)
T ss_pred CCcccccC--HHHHhc-----cCCCCeEEEEEccccCc-ccHHHHHHHHHHcC---------------CCCCEEEEECCC
Confidence 98766532 333332 14679999999999865 34555565554422 125899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|+|++++|+++.+.+
T Consensus 132 g~gi~~l~~~l~~~~ 146 (158)
T PRK15467 132 PQSVQQLVDYLASLT 146 (158)
T ss_pred ccCHHHHHHHHHHhc
Confidence 999999999998765
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=161.08 Aligned_cols=156 Identities=16% Similarity=0.167 Sum_probs=110.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh-----------Hhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV-----------WRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-----------~~~ 84 (194)
..++++++|.+++|||||+|++.+..... ...|.......+..++..+.+|||||..+.... ...
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 45799999999999999999999876432 223333444566678889999999997543321 123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
+++.+|++++|+|+++..+.... ..+....+ .++|+++|+||+|+. +....+++.+.+....
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~------------ 313 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLILE----AGKALVIVVNKWDLVKDEKTREEFKKELRRKL------------ 313 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHHHH----cCCcEEEEEECcccCCCHHHHHHHHHHHHHhc------------
Confidence 57889999999999986655443 23333322 478999999999997 2223344444443322
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||++|.|++++|+++.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 12234689999999999999999998764
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-22 Score=158.15 Aligned_cols=149 Identities=19% Similarity=0.158 Sum_probs=108.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRD 84 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~ 84 (194)
...+.++|+++|++|+|||||+|++.+..... ...|.+.....+.+++..+.+|||||+.+.... ...
T Consensus 199 ~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~ 278 (442)
T TIGR00450 199 KLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFK 278 (442)
T ss_pred HhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHH
Confidence 34577899999999999999999999876432 222333345677888999999999998654432 235
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+++.+|++++|+|++++.++... |+..+.. .++|+++|+||+|+.+. +.+++ .+..
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~-~~~~~---~~~~-------------- 334 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN-SLEFF---VSSK-------------- 334 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc-chhhh---hhhc--------------
Confidence 67889999999999998776654 5544422 47899999999998653 22111 1111
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+||++ .||+++|+.+.+.+
T Consensus 335 ---~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 335 ---VLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred ---CCceEEEEEec-CCHHHHHHHHHHHH
Confidence 14688999998 68999998887754
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=138.26 Aligned_cols=154 Identities=23% Similarity=0.278 Sum_probs=105.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~ 87 (194)
...+|+++|++|+|||||++++.+.......+ +.......+...+..+.+||+||...... .....+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999876542222 11112233444568899999999764332 2334577
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.+|++++|+|++++ +.....++...+.. .+.|+++++||+|+.. .....+....+.. ..
T Consensus 82 ~~d~i~~v~d~~~~--~~~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~---------------~~ 141 (168)
T cd04163 82 DVDLVLFVVDASEP--IGEGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKE---------------LG 141 (168)
T ss_pred hCCEEEEEEECCCc--cCchHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHh---------------cc
Confidence 89999999999986 23333333333332 3689999999999873 2233333333322 22
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+..+++++|++++.|+++++++|.+.+
T Consensus 142 ~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 142 PFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred CCCceEEEEeccCCChHHHHHHHHhhC
Confidence 246789999999999999999998754
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >COG1100 GTPase SAR1 and related small G proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=146.75 Aligned_cols=171 Identities=25% Similarity=0.293 Sum_probs=117.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCccee-E-EEeC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTSE-E-LSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~~-~-~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+|+++|++|||||||++++.++.+.. +.+|.+.... . .... ..++.+||++|+++++..+..++.+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999999884 5556554332 2 2222 46799999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-HHHhhhcccCccCCCcc-CcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED-EVRHFFGLYGLTTGKEF-TPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~-e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 173 (194)
+|.....++.+....|...+......+.|+++++||+|+....... .+........ ..... ............+++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREV--VLLVLAPKAVLPEVANPALLE 162 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCc--chhhhHhHHhhhhhcccceeE
Confidence 9999955566655545444444333579999999999998743221 1111111000 00000 000001111233899
Q ss_pred eccc--cCCChHHHHHHHhhhc
Q psy2159 174 CSVL--KRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~--~~~~v~~l~~~l~~~i 193 (194)
+|++ .+.++.++|..+.+.+
T Consensus 163 ~s~~~~~~~~v~~~~~~~~~~~ 184 (219)
T COG1100 163 TSAKSLTGPNVNELFKELLRKL 184 (219)
T ss_pred eecccCCCcCHHHHHHHHHHHH
Confidence 9999 9999999999887654
|
|
| >TIGR00487 IF-2 translation initiation factor IF-2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-22 Score=161.50 Aligned_cols=161 Identities=24% Similarity=0.272 Sum_probs=115.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-c--cCCCcceeEEEeCCE-EEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-M--PTLHPTSEELSMGDI-VFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-~--~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+..++.+|+++|++++|||||++++.+..+... . .|.......+..++. .+.+|||||++.+..++...+..+|++
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia 162 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV 162 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence 456788999999999999999999998776532 2 234444455666544 899999999999999988889999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++.. ..+....+... ...+.|+++++||+|+... ..+++...+..... ....+ ....+++
T Consensus 163 ILVVda~dgv-~~qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~-------~~~~~-~~~~~~v 228 (587)
T TIGR00487 163 VLVVAADDGV-MPQTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGL-------VPEDW-GGDTIFV 228 (587)
T ss_pred EEEEECCCCC-CHhHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhh-------hHHhc-CCCceEE
Confidence 9999988743 23333333322 2257899999999998653 45556555533210 00001 1235799
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|+|++++++++..
T Consensus 229 ~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 229 PVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEECCCCCChHHHHHhhhh
Confidence 9999999999999999864
|
This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=144.13 Aligned_cols=155 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe---------------------------CC----
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM---------------------------GD---- 64 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~---------------------------~~---- 64 (194)
.+|+++|+.|+|||||++.+.+..... ...|.......+.+ .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 378999999999999999997652210 11111111111111 02
Q ss_pred --EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH--
Q psy2159 65 --IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-- 140 (194)
Q Consensus 65 --~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-- 140 (194)
..+.+||+||++++...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+......
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 68999999999988887777788899999999998742222223333333222 23579999999998653222
Q ss_pred --HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 141 --DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 141 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++.+.++.. ....++++++||++|+|+++++++|.+.+
T Consensus 158 ~~~~i~~~~~~~--------------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l 198 (203)
T cd01888 158 NYEQIKKFVKGT--------------IAENAPIIPISAQLKYNIDVLLEYIVKKI 198 (203)
T ss_pred HHHHHHHHHhcc--------------ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence 2233333221 12246799999999999999999999876
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=155.79 Aligned_cols=152 Identities=20% Similarity=0.248 Sum_probs=108.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccc--hhhH------hhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQA--RRVW------RDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~--~~~~------~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+.+.. ..+.|.++....+..++. .+.+|||+|..+. ...+ ...+..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~A 277 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQA 277 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcC
Confidence 58999999999999999999987653 456788888888887764 8899999998432 2222 2336789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|++++.++.....+ ..++......++|+++|+||+|+.+... ..... . . .+. .
T Consensus 278 DlIL~VvDaS~~~~~e~l~~v-~~iL~el~~~~~pvIiV~NKiDL~~~~~-~~~~~-~-~--------------~~~--~ 337 (426)
T PRK11058 278 TLLLHVVDAADVRVQENIEAV-NTVLEEIDAHEIPTLLVMNKIDMLDDFE-PRIDR-D-E--------------ENK--P 337 (426)
T ss_pred CEEEEEEeCCCccHHHHHHHH-HHHHHHhccCCCCEEEEEEcccCCCchh-HHHHH-H-h--------------cCC--C
Confidence 999999999998766665432 2233322235789999999999865311 11111 0 0 010 1
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++.+||++|.|+++++++|.+.+
T Consensus 338 ~~v~ISAktG~GIdeL~e~I~~~l 361 (426)
T PRK11058 338 IRVWLSAQTGAGIPLLFQALTERL 361 (426)
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHh
Confidence 258899999999999999998765
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-21 Score=149.51 Aligned_cols=155 Identities=22% Similarity=0.309 Sum_probs=106.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccch--------hhHhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQAR--------RVWRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~ 87 (194)
+...|+++|++|||||||+|++.+.+.....+....+ ......++..+.++||||..... ......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 5567899999999999999999998765433322222 22333455799999999975432 22333567
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++|++++|+|+++. +.....++...+.. .+.|+++|+||+|+... .+++...++... ....
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~------------~~~~ 144 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKD--KEELLPLLEELS------------ELMD 144 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCC--HHHHHHHHHHHH------------hhCC
Confidence 89999999999882 33334444444432 46899999999999632 223333332221 1122
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||+++.|++++++++.+.+
T Consensus 145 ~~~i~~iSA~~~~gv~~L~~~L~~~l 170 (292)
T PRK00089 145 FAEIVPISALKGDNVDELLDVIAKYL 170 (292)
T ss_pred CCeEEEecCCCCCCHHHHHHHHHHhC
Confidence 46799999999999999999998875
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=140.96 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=103.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCcceeEEEe-CCEEEEEEEcCCCc----------cchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTSEELSM-GDIVFTTHDLGGHV----------QARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~----------~~~~~~~~~~ 86 (194)
....+|+++|++|+|||||++++.+.++ ..+.++.+.+...-.+ -+..+.+||+||.. ++......++
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 4668999999999999999999998763 4555565544322111 13689999999953 2333334444
Q ss_pred hc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 87 PA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 87 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.. .+++++|+|.+++.+. ...++...+.. .+.|+++++||+|+......++....+....
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~--~~~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l------------ 164 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKE--LDLQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKAL------------ 164 (196)
T ss_pred HhCccceEEEEEEecCCCCCH--HHHHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHH------------
Confidence 43 4678888998775433 22233333332 4689999999999876433333222222111
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......++++||+++.|++++++.|.+.+
T Consensus 165 -~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 165 -KFGDDEVILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred -HhcCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 11136789999999999999999998875
|
|
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-21 Score=144.13 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=116.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccch--------hhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQAR--------RVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~ 86 (194)
.+..-++++|.|++|||||+|++.+.+.+.+++ |...-.+.+..++..+.++||||.-+-+ ......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 455678899999999999999999999875444 4444456677788999999999955422 2233457
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+++|+++||+|++++ +.....++.+.+.. .+.|+++++||+|+..... ...+.+.+.. .
T Consensus 84 ~dvDlilfvvd~~~~--~~~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~---------------~ 143 (298)
T COG1159 84 KDVDLILFVVDADEG--WGPGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKK---------------L 143 (298)
T ss_pred ccCcEEEEEEecccc--CCccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHh---------------h
Confidence 889999999999884 34444455554443 5679999999999877544 3444444443 3
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..+..++++||++|.|++.|.+.+.+.++
T Consensus 144 ~~f~~ivpiSA~~g~n~~~L~~~i~~~Lp 172 (298)
T COG1159 144 LPFKEIVPISALKGDNVDTLLEIIKEYLP 172 (298)
T ss_pred CCcceEEEeeccccCCHHHHHHHHHHhCC
Confidence 34568999999999999999999988763
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=135.56 Aligned_cols=151 Identities=26% Similarity=0.276 Sum_probs=106.5
Q ss_pred EEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeC-CEEEEEEEcCCCccchh-------hHhhhhhcCCEEE
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-------VWRDYFPAVDAIV 93 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ii 93 (194)
++|++|||||||++++.+..... ...|........... ...+.+||+||...... ....+++.+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 57999999999999999875542 222333334444444 57999999999876542 3445778999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|.++........ +..... ..+.|+++++||+|+.......+......... ......++++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 143 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLIL------------LLLLGLPVIA 143 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhc------------ccccCCceEE
Confidence 999999977665554 222222 26889999999999977544444322111111 2334578999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+++.|++++++++.+.+
T Consensus 144 ~sa~~~~~v~~l~~~l~~~~ 163 (163)
T cd00880 144 VSALTGEGIDELREALIEAL 163 (163)
T ss_pred EeeeccCCHHHHHHHHHhhC
Confidence 99999999999999998764
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK05306 infB translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-21 Score=161.06 Aligned_cols=161 Identities=21% Similarity=0.216 Sum_probs=116.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+..++..|+++|+.++|||||+++|....+.. ...|.......+.+++..+.+|||||+..+..++...+..+|+++
T Consensus 286 ~~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI 365 (787)
T PRK05306 286 LVPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV 365 (787)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence 45688999999999999999999998876542 122344444567777899999999999999999988899999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|+++.. .......+... ...+.|+++++||+|+... ..+++...+.... .....+ ...+++++
T Consensus 366 LVVdAddGv-~~qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~-------~~~e~~-g~~vp~vp 431 (787)
T PRK05306 366 LVVAADDGV-MPQTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYG-------LVPEEW-GGDTIFVP 431 (787)
T ss_pred EEEECCCCC-CHhHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhc-------ccHHHh-CCCceEEE
Confidence 999998743 22323333322 2257899999999999653 3444444433221 000011 12378999
Q ss_pred eccccCCChHHHHHHHhh
Q psy2159 174 CSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~ 191 (194)
+||++|.|+++++++|..
T Consensus 432 vSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 432 VSAKTGEGIDELLEAILL 449 (787)
T ss_pred EeCCCCCCchHHHHhhhh
Confidence 999999999999999864
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=155.21 Aligned_cols=146 Identities=23% Similarity=0.285 Sum_probs=104.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc--------chhhHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+..... ...|.+.....+..++..+.+|||||+.. .......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 479999999999999999999887532 22344555677888889999999999886 223345567889
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+.+..+. ....+..++.. .++|+++++||+|+... .++..+.... . .-
T Consensus 82 d~il~vvd~~~~~~~--~~~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~l-g----------------~~ 137 (435)
T PRK00093 82 DVILFVVDGRAGLTP--ADEEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYSL-G----------------LG 137 (435)
T ss_pred CEEEEEEECCCCCCH--HHHHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHhc-C----------------CC
Confidence 999999999875332 22333333333 37899999999997541 1222222211 1 12
Q ss_pred EEEEeccccCCChHHHHHHHhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.++++||++|.|++++++++.+
T Consensus 138 ~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 138 EPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred CCEEEEeeCCCCHHHHHHHHHh
Confidence 3799999999999999999976
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.4e-21 Score=151.53 Aligned_cols=157 Identities=19% Similarity=0.273 Sum_probs=112.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccch-------hhHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQAR-------RVWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 91 (194)
.|.++|.|+||||||+|++.+.+.. .+.+|..+....+..++ ..+.++|+||..+.. .....+++.+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 6889999999999999999986542 46678888888888875 579999999975421 122345788999
Q ss_pred EEEEEECC---CCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDAS---DRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~---~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|++ ....+.....++.++... ....++|+++|+||+|+.......+....+... .. .
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-------------~~-~ 306 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-------------LG-W 306 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-------------hC-C
Confidence 99999988 344566666666665443 122468999999999986532222222222110 00 1
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||+++.|+++++++|.+.+
T Consensus 307 ~~~Vi~ISA~tg~GIdeLl~~I~~~L 332 (390)
T PRK12298 307 EGPVYLISAASGLGVKELCWDLMTFI 332 (390)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHh
Confidence 12589999999999999999998865
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-21 Score=153.28 Aligned_cols=147 Identities=22% Similarity=0.267 Sum_probs=106.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCCc--------cchhhHhhhhhcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAVD 90 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~d 90 (194)
+|+++|.+|||||||+|++.+.....+ ..|.+.....+..++..+.+|||||.. .+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 478999999999999999998775432 234444567778889999999999963 33444566788999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|..+.. ......+..++.. .++|+++|+||+|+..... ...+.. .. ....
T Consensus 81 ~vl~vvD~~~~~--~~~d~~i~~~l~~---~~~piilVvNK~D~~~~~~--~~~~~~-~l----------------g~~~ 136 (429)
T TIGR03594 81 VILFVVDGREGL--TPEDEEIAKWLRK---SGKPVILVANKIDGKKEDA--VAAEFY-SL----------------GFGE 136 (429)
T ss_pred EEEEEEeCCCCC--CHHHHHHHHHHHH---hCCCEEEEEECccCCcccc--cHHHHH-hc----------------CCCC
Confidence 999999998743 3333334444433 4789999999999865221 111111 11 1135
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++++++.+.+
T Consensus 137 ~~~vSa~~g~gv~~ll~~i~~~l 159 (429)
T TIGR03594 137 PIPISAEHGRGIGDLLDAILELL 159 (429)
T ss_pred eEEEeCCcCCChHHHHHHHHHhc
Confidence 89999999999999999998765
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >COG2229 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-21 Score=130.56 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=128.5
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----------c---ccCCCcceeEEEeCC-EEEEEEEcCCCccchhhH
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------H---MPTLHPTSEELSMGD-IVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----------~---~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~~~ 82 (194)
....+.+|++.|+-++||||+++.+....... . ..|+..+++...+.+ ..+.+++||||+++.-+|
T Consensus 6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 34577899999999999999999999876421 1 135566677777776 899999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.-+.++++++|+++|.+.+..+ ....+.++..... ..|++|.+||.|+....+++++.+.++...
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~--~a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----------- 150 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF--HAEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----------- 150 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch--HHHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc-----------
Confidence 9999999999999999998888 3333444444422 299999999999999999999999987641
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...++++.+|.++++..+.++.+..+
T Consensus 151 ----~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 151 ----LSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred ----CCCceeeeecccchhHHHHHHHHHhh
Confidence 24789999999999999999988764
|
|
| >KOG4252|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-23 Score=142.91 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=131.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce----eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS----EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++++++|..++||||++++++.+-|. .+..|++.+. ..+...+..+.+||++|++++......+|+++.+-
T Consensus 17 ~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~ 96 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQAS 96 (246)
T ss_pred hhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccce
Confidence 456789999999999999999999988776 5666777653 23334457889999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++||+-+|..||+....|...+... ...+|.++|-||+|+.+ .....++....++.. ..
T Consensus 97 vLVFSTTDr~SFea~~~w~~kv~~e--~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~-----------------~R 157 (246)
T KOG4252|consen 97 VLVFSTTDRYSFEATLEWYNKVQKE--TERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLH-----------------KR 157 (246)
T ss_pred EEEEecccHHHHHHHHHHHHHHHHH--hccCCeEEeeccchhhHhhhcchHHHHHHHHHhh-----------------hh
Confidence 9999999999999999999998554 47899999999999987 355556655555433 66
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+|+++..||.+.|.+|.+++
T Consensus 158 lyRtSvked~NV~~vF~YLaeK~ 180 (246)
T KOG4252|consen 158 LYRTSVKEDFNVMHVFAYLAEKL 180 (246)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHH
Confidence 89999999999999999998764
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=137.51 Aligned_cols=144 Identities=20% Similarity=0.287 Sum_probs=95.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCccee--EEEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
.+..+|+++|++|+|||||+|++.+.. ...+.++.+.+.. ....+ ..+.+||+||... +......+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 577899999999999999999999886 3455556555432 22233 3799999999532 22233344
Q ss_pred hh---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCcc
Q psy2159 86 FP---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 86 ~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~ 158 (194)
++ .++++++|+|.+..-+.... .+..++.. .+.|+++++||+|+.+... .+++++.++..
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~-------- 161 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD-------- 161 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc--------
Confidence 44 35899999999875433332 33333333 4789999999999875322 23333333321
Q ss_pred CcccccCCcceEEEEeccccCCChH
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
...+.++++||++|+|++
T Consensus 162 -------~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 162 -------ADDPSVQLFSSLKKTGID 179 (179)
T ss_pred -------cCCCceEEEECCCCCCCC
Confidence 123579999999999974
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >TIGR01393 lepA GTP-binding protein LepA | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=155.81 Aligned_cols=152 Identities=18% Similarity=0.164 Sum_probs=108.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC-------CC-ccccC------CCccee----EEEe---CC--EEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR-------TA-QHMPT------LHPTSE----ELSM---GD--IVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~-------~~-~~~~t------~~~~~~----~~~~---~~--~~~~~~d~~g~~~~~ 79 (194)
+++++|+.++|||||++++.... +. ++.++ .|.+.. .+.+ ++ ..+.+|||||+.++.
T Consensus 5 Ni~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF~ 84 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 84 (595)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHHH
Confidence 78899999999999999998752 11 22222 234332 2333 22 789999999999999
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
..+..++..+|++++|+|+++..+......|+... . .+.|+++++||+|+.... .++..+.+....
T Consensus 85 ~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~-~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~l-------- 150 (595)
T TIGR01393 85 YEVSRSLAACEGALLLVDAAQGIEAQTLANVYLAL-E----NDLEIIPVINKIDLPSAD-PERVKKEIEEVI-------- 150 (595)
T ss_pred HHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHH-H----cCCCEEEEEECcCCCccC-HHHHHHHHHHHh--------
Confidence 98899999999999999999876666555444332 2 467999999999986532 222222221110
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++|++|.+.+
T Consensus 151 -----g~~~~~vi~vSAktG~GI~~Lle~I~~~l 179 (595)
T TIGR01393 151 -----GLDASEAILASAKTGIGIEEILEAIVKRV 179 (595)
T ss_pred -----CCCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence 11113589999999999999999998865
|
LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown. |
| >CHL00189 infB translation initiation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=156.72 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=113.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEe----CCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSM----GDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~----~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
+..+...|+++|+.++|||||++++....+.. ...|.......+.. .+..+.+|||||++.+..++..++..+
T Consensus 240 l~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a 319 (742)
T CHL00189 240 SINRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT 319 (742)
T ss_pred hcccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence 45678899999999999999999999876652 12233333333332 348999999999999999999899999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+++.... .....+..+ . ..+.|+++++||+|+... ..+++.+.+..... ... .....+
T Consensus 320 DiaILVVDA~dGv~~-QT~E~I~~~-k---~~~iPiIVViNKiDl~~~-~~e~v~~eL~~~~l-------l~e-~~g~~v 385 (742)
T CHL00189 320 DIAILIIAADDGVKP-QTIEAINYI-Q---AANVPIIVAINKIDKANA-NTERIKQQLAKYNL-------IPE-KWGGDT 385 (742)
T ss_pred CEEEEEEECcCCCCh-hhHHHHHHH-H---hcCceEEEEEECCCcccc-CHHHHHHHHHHhcc-------chH-hhCCCc
Confidence 999999999874322 222223332 1 257899999999998763 34445444432210 000 011247
Q ss_pred EEEEeccccCCChHHHHHHHhhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++++||++|.|+++++++|...
T Consensus 386 pvv~VSAktG~GIdeLle~I~~l 408 (742)
T CHL00189 386 PMIPISASQGTNIDKLLETILLL 408 (742)
T ss_pred eEEEEECCCCCCHHHHHHhhhhh
Confidence 89999999999999999998753
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=159.23 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=111.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCcc----------chhh-Hhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ----------ARRV-WRDY 85 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~----------~~~~-~~~~ 85 (194)
..+|+++|.+|||||||+|++.+.+.. ....|.+.....+.+++..+.+|||||..+ +... ...+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 479999999999999999999998743 233345555566778888899999999642 1111 1234
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
++.+|++++|+|+++..+..... .+..+.. .++|+++|+||+|+.+....+.+.+.+.... ..
T Consensus 530 i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l------------~~ 592 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKTEF------------DR 592 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHHhc------------cC
Confidence 67899999999999877666554 3444432 4789999999999976433334433332211 12
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++++.+.+.+
T Consensus 593 ~~~~~ii~iSAktg~gv~~L~~~i~~~~ 620 (712)
T PRK09518 593 VTWARRVNLSAKTGWHTNRLAPAMQEAL 620 (712)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2335679999999999999999987753
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=137.21 Aligned_cols=150 Identities=20% Similarity=0.230 Sum_probs=106.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~i 92 (194)
+++++|++|+|||||++++.+.... ..++|..+..+.+.+++..+++||+||+.+.. ......++++|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987532 34567777888888999999999999975432 1234568899999
Q ss_pred EEEEECCCCCC-hHHHHHHH----------------------------------------HHHHhCC-------------
Q psy2159 93 VFIIDASDRSR-FPESKYEL----------------------------------------DNLLADD------------- 118 (194)
Q Consensus 93 i~v~d~~~~~~-~~~~~~~~----------------------------------------~~~~~~~------------- 118 (194)
++|+|+++... ...+...+ ..++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999977442 11111111 1111110
Q ss_pred -----------CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 119 -----------ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 119 -----------~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.....|+++|+||+|+.. .++.....+. ..++++||++|.|++++|+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~---~~~~~~~~~~-------------------~~~~~~SA~~g~gi~~l~~ 219 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLIS---IEELDLLARQ-------------------PNSVVISAEKGLNLDELKE 219 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCC---HHHHHHHhcC-------------------CCEEEEcCCCCCCHHHHHH
Confidence 112368999999999854 3444432211 3489999999999999999
Q ss_pred HHhhhcC
Q psy2159 188 WLANYID 194 (194)
Q Consensus 188 ~l~~~i~ 194 (194)
.+.+.++
T Consensus 220 ~i~~~L~ 226 (233)
T cd01896 220 RIWDKLG 226 (233)
T ss_pred HHHHHhC
Confidence 9988763
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=152.00 Aligned_cols=157 Identities=16% Similarity=0.157 Sum_probs=108.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccchh-----------hHh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQARR-----------VWR 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~ 83 (194)
...++|+++|.+|+|||||+|++++.......+..+.+ ...+..++..+.+|||||..+... ...
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 35689999999999999999999987643333322222 344556788999999999643211 112
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++.+|++++|+|++++.+.... ..+..+ .. .++|+++++||+|+.+....+++.+.+....
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~-~~---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l------------ 313 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDL-RIAGLA-LE---AGRALVIVVNKWDLVDEKTMEEFKKELRRRL------------ 313 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHH-HH---cCCcEEEEEECccCCCHHHHHHHHHHHHHhc------------
Confidence 357789999999999987654443 223333 22 4689999999999875333344444443222
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++++||++|.|++++++.+.+.
T Consensus 314 ~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 314 PFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 12234689999999999999999998763
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-20 Score=157.22 Aligned_cols=149 Identities=22% Similarity=0.282 Sum_probs=105.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce----eEEEeCCEEEEEEEcCCCcc--------chhhHhhhhhc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS----EELSMGDIVFTTHDLGGHVQ--------ARRVWRDYFPA 88 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~~~ 88 (194)
..+|+++|.+++|||||+|++++.....+.++.+.+. .....++..+.+|||||... +......++..
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 3579999999999999999999877654444444443 34556778999999999763 22334456789
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|++++|+|+++. +......+...+.. .++|+++|+||+|+.... .+....... . .
T Consensus 355 aD~iL~VvDa~~~--~~~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~--~~~~~~~~l-g------------~---- 410 (712)
T PRK09518 355 ADAVVFVVDGQVG--LTSTDERIVRMLRR---AGKPVVLAVNKIDDQASE--YDAAEFWKL-G------------L---- 410 (712)
T ss_pred CCEEEEEEECCCC--CCHHHHHHHHHHHh---cCCCEEEEEECcccccch--hhHHHHHHc-C------------C----
Confidence 9999999999763 34444444444433 679999999999986421 122222211 1 1
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++||++|.|++++++++.+.+
T Consensus 411 ~~~~~iSA~~g~GI~eLl~~i~~~l 435 (712)
T PRK09518 411 GEPYPISAMHGRGVGDLLDEALDSL 435 (712)
T ss_pred CCeEEEECCCCCCchHHHHHHHHhc
Confidence 2357899999999999999998765
|
|
| >TIGR00475 selB selenocysteine-specific elongation factor SelB | Back alignment and domain information |
|---|
Probab=99.86 E-value=9e-21 Score=156.24 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=109.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC---C-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT---A-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~---~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.|+++|++++|||||+++|.+... + . ...|.+.....+.+++..+.+||+||++++...+...+.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 3688999999999999999997432 2 1 22344445566778889999999999999988888888999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHH----HHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASED----EVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+++.. ..+....+.. +.. .+.| +++++||+|+.+....+ ++.+.+.... . ....+
T Consensus 81 VDa~~G~-~~qT~ehl~i-l~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~------------~-~~~~~ 142 (581)
T TIGR00475 81 VDADEGV-MTQTGEHLAV-LDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYI------------F-LKNAK 142 (581)
T ss_pred EECCCCC-cHHHHHHHHH-HHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhC------------C-CCCCc
Confidence 9998742 2333333322 222 3567 99999999997632222 2333332211 0 12478
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|+|++++++++.+.+
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~ 165 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLL 165 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHH
Confidence 99999999999999999987653
|
In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes. |
| >PRK12317 elongation factor 1-alpha; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=150.67 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=104.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.+++++++++|++++|||||+++|+...-. ....|.+.....++.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 467899999999999999999999843211 1223455555667778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---- 139 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---- 139 (194)
+..+.+|||||++++.......+..+|++++|+|+++..++.....+...++... ...|+++++||+|+.....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998876655555788999999999987322322222222222221 2347999999999865211
Q ss_pred --HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 140 --EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 140 --~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
.+++.+.++... .....++++++||++|+|++++
T Consensus 161 ~~~~~i~~~l~~~g------------~~~~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVG------------YKPDDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhC------------CCcCcceEEEeecccCCCcccc
Confidence 123444443322 2223478999999999999873
|
|
| >PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-21 Score=130.67 Aligned_cols=109 Identities=24% Similarity=0.316 Sum_probs=80.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCccee--EEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
||+|+|++|||||||+++|.+..+. .+.++.+.+.. .... ....+.+||++|++.+...+..++..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 6899999999999999999998876 22222233222 2222 335689999999998887767778999999999
Q ss_pred EECCCCCChHHHHH---HHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 96 IDASDRSRFPESKY---ELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 96 ~d~~~~~~~~~~~~---~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
+|++++.++..+.. |+..+... ..+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 99999999988754 45555432 35699999999998
|
They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A. |
| >TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-21 Score=151.75 Aligned_cols=154 Identities=16% Similarity=0.094 Sum_probs=103.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCC--CC--------------------------------ccccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDR--TA--------------------------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~ 62 (194)
..++.++++++|+.++|||||+++|+... .. ....|.+.....+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 45688899999999999999999998521 11 012233334455666
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFDAAS-- 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-- 139 (194)
++..+.+||+||++++.......+..+|++++|+|+++.+++..... ....+.... ...|+++++||+|+.+...
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 78999999999999887666666789999999999998753322111 111222221 2357999999999964211
Q ss_pred ----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 140 ----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 140 ----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+++.+.++... .....++++++||++|.|+.+
T Consensus 161 ~~~~~~ei~~~~~~~g------------~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVG------------YNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcC------------CCcccceEEEeeccccccccc
Confidence 123333343322 222457899999999999986
|
This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels. |
| >cd01884 EF_Tu EF-Tu subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-20 Score=132.25 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=97.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC----------C---------ccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT----------A---------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
++++|+++|+.++|||||+++|+.... . ....|.......++.++..+.++||||+..+..
T Consensus 1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~ 80 (195)
T cd01884 1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK 80 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence 467899999999999999999985310 0 111133333344555678899999999998877
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYGLTT 154 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~~~~ 154 (194)
.....+..+|++++|+|+.... .......+..+.. .++| +|+++||+|+..... .+ ++.+.+....
T Consensus 81 ~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g--- 152 (195)
T cd01884 81 NMITGAAQMDGAILVVSATDGP-MPQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYG--- 152 (195)
T ss_pred HHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhc---
Confidence 6677788999999999987742 2233333443332 3556 789999999864211 12 2333333322
Q ss_pred CCccCcccccCCcceEEEEeccccCCCh
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
.....++++++||.+|.|+
T Consensus 153 ---------~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 153 ---------FDGDNTPIVRGSALKALEG 171 (195)
T ss_pred ---------ccccCCeEEEeeCccccCC
Confidence 2234588999999999985
|
This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-20 Score=134.33 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=95.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc----------------------------------cccCCCcceeEEEeCCEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ----------------------------------HMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 68 (194)
+|+++|++++|||||+++|+...-.. ...|.......+..++..+.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58899999999999999997543210 12244444556667788999
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhh
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHF 146 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~ 146 (194)
+|||||+.++.......+..+|++++|+|+++.. ...... ...++... ...++++++||+|+..... .+++...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~-~~~~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGV-LEQTRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCc-cHhHHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999887766666788999999999998753 122222 22222221 2245788999999865211 1122222
Q ss_pred hcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 147 FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
++... ...+...++++++||++|.|+.+
T Consensus 157 ~~~~~----------~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 157 YLAFA----------AKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHH----------HHcCCCCceEEEEeCCCCCCCcc
Confidence 21110 00222336799999999999875
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >PRK05433 GTP-binding protein LepA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=149.89 Aligned_cols=153 Identities=18% Similarity=0.169 Sum_probs=106.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC--CC------ccc------cCCCcc----eeEEEeC-----CEEEEEEEcCCCccc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR--TA------QHM------PTLHPT----SEELSMG-----DIVFTTHDLGGHVQA 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~--~~------~~~------~t~~~~----~~~~~~~-----~~~~~~~d~~g~~~~ 78 (194)
-+++++|+.++|||||+.++.... +. ++. .+.+.+ ...+.+. +..+++|||||+.++
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 388999999999999999998632 11 111 112222 2233332 478999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCcc
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
...+..++..+|++++|+|+++.........|. .... .+.|+++++||+|+.... .++..+.+...
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~-~~~~----~~lpiIvViNKiDl~~a~-~~~v~~ei~~~-------- 153 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVY-LALE----NDLEIIPVLNKIDLPAAD-PERVKQEIEDV-------- 153 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HHHH----CCCCEEEEEECCCCCccc-HHHHHHHHHHH--------
Confidence 988889999999999999998865544433332 2222 468999999999986532 22222222111
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.....++++||++|.|+++++++|.+.+
T Consensus 154 -----lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l 183 (600)
T PRK05433 154 -----IGIDASDAVLVSAKTGIGIEEVLEAIVERI 183 (600)
T ss_pred -----hCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence 011124589999999999999999998765
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.5e-20 Score=142.41 Aligned_cols=148 Identities=21% Similarity=0.258 Sum_probs=111.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~ 88 (194)
..|+++|.|++|||||.|+|++.+.+- +..|.+..++..+..+..+.++||+|.+... ......+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 578899999999999999999998764 4445666678899999999999999977432 223345678
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|+++||+|.... .....+.+..++.. .++|+++|+||+|-.. ..+...++... ..
T Consensus 84 ADvilfvVD~~~G--it~~D~~ia~~Lr~---~~kpviLvvNK~D~~~--~e~~~~efysl-----------------G~ 139 (444)
T COG1160 84 ADVILFVVDGREG--ITPADEEIAKILRR---SKKPVILVVNKIDNLK--AEELAYEFYSL-----------------GF 139 (444)
T ss_pred CCEEEEEEeCCCC--CCHHHHHHHHHHHh---cCCCEEEEEEcccCch--hhhhHHHHHhc-----------------CC
Confidence 9999999998773 34444555555543 5799999999999752 12223333322 12
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..+++||.+|.|+.+|.+++++.+
T Consensus 140 g~~~~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 140 GEPVPISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred CCceEeehhhccCHHHHHHHHHhhc
Confidence 4589999999999999999999875
|
|
| >cd04168 TetM_like Tet(M)-like subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-19 Score=132.67 Aligned_cols=167 Identities=18% Similarity=0.208 Sum_probs=113.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++|+|||||++++....-. . ...|.......+..++.++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5789999999999999999864211 0 011223334567778899999999999999888
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---CCHHHHHhhhcccCccCC---
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---ASEDEVRHFFGLYGLTTG--- 155 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---~~~~e~~~~~~~~~~~~~--- 155 (194)
+..+++.+|++++|+|+++... .....++..+.. .++|+++++||+|+... ...+++++.+......-+
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~-~~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQ-AQTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 8888999999999999988543 233444444432 47899999999998752 223334444332100000
Q ss_pred ---------------------------CccCc--------------ccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 156 ---------------------------KEFTP--------------REILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 156 ---------------------------~~~~~--------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++|.. .-......+|++..||.++.|++.|++.+.+.++
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 00000 0001334678888999999999999999998763
|
Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB. |
| >TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.6e-20 Score=145.44 Aligned_cols=158 Identities=18% Similarity=0.165 Sum_probs=104.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcc------ccCCCcceeE----------------E----Ee------CCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH------MPTLHPTSEE----------------L----SM------GDIV 66 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~------~~t~~~~~~~----------------~----~~------~~~~ 66 (194)
+++++|+++|++++|||||+++|.+...... .-|....... . +. .+..
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4678999999999999999999976432211 0111111000 0 01 2468
Q ss_pred EEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HH
Q psy2159 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DE 142 (194)
Q Consensus 67 ~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e 142 (194)
+.+||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.... ++
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII---GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc---CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888899999999998743123333333332211 23579999999998753222 22
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.. .....++++++||++|+|+++++++|.+.+
T Consensus 159 i~~~l~~--------------~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l 195 (406)
T TIGR03680 159 IKEFVKG--------------TVAENAPIIPVSALHNANIDALLEAIEKFI 195 (406)
T ss_pred HHhhhhh--------------cccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence 2222211 111247899999999999999999998754
|
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. |
| >cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=134.41 Aligned_cols=146 Identities=18% Similarity=0.121 Sum_probs=97.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeCCEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~~~~~~ 68 (194)
+|+++|++++|||||+.+|+...-. ....|.......+..++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4789999999999999998642110 011234444566778889999
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC------ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CC--
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS------RFPESKYELDNLLADDALTDVPILILGNKIDIFDA-AS-- 139 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~-- 139 (194)
+||+||+..+...+...++.+|++++|+|+++.. ........+... .. ...+|+++++||+|+... ..
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH--cCCCeEEEEEEccccccccccHH
Confidence 9999999877776666778899999999998842 111222222222 21 134689999999999742 11
Q ss_pred -HHHHHhh----hcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 140 -EDEVRHF----FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 140 -~~e~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
.+++.+. ++... ...+.++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~------------~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVG------------YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcC------------CCcCCceEEEeecCcCCCCC
Confidence 2233332 22222 23345889999999999986
|
EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in |
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.4e-20 Score=151.39 Aligned_cols=141 Identities=20% Similarity=0.213 Sum_probs=98.7
Q ss_pred cCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchhh------Hhhhh--hcCCEEEEEE
Q psy2159 28 GLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV------WRDYF--PAVDAIVFII 96 (194)
Q Consensus 28 G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------~~~~~--~~~d~ii~v~ 96 (194)
|.+|||||||+|++.+..+. . ...|.+.....+++++..+.+||+||+.++... ...++ ..+|++++|+
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999987652 2 222344444567788889999999999876542 33333 3689999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
|.++.+ ....+..++.+ .+.|+++++||+|+.+.... .+.....+..+ .+++++|
T Consensus 81 Dat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg-----------------~pvv~tS 136 (591)
T TIGR00437 81 DASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLEERLG-----------------VPVVPTS 136 (591)
T ss_pred cCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHHHHcC-----------------CCEEEEE
Confidence 998743 23333344433 47899999999998642211 12222222212 6799999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|+|++++++++.+.
T Consensus 137 A~tg~Gi~eL~~~i~~~ 153 (591)
T TIGR00437 137 ATEGRGIERLKDAIRKA 153 (591)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 99999999999999764
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >KOG3883|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=118.49 Aligned_cols=157 Identities=21% Similarity=0.311 Sum_probs=125.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcce-eEEEeCC---EEEEEEEcCCCccc-hhhHhhhhhcCCE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTS-EELSMGD---IVFTTHDLGGHVQA-RRVWRDYFPAVDA 91 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~-~~~~~~~---~~~~~~d~~g~~~~-~~~~~~~~~~~d~ 91 (194)
+.+++++.|..++|||+++..+...... ...||+...+ ..++.+. ..+.++||.|...+ ..+-..+++-+|+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa 87 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA 87 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence 5679999999999999999999876543 4556655443 2333332 47999999999887 4566677888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|++..+++||+.+...-..+-++......|+++++||+|+.+ ....+-...|.+.+. +
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEk-----------------v 150 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREK-----------------V 150 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhh-----------------e
Confidence 999999999999999988777777777778899999999999944 556666666666555 8
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++|.++.++-|-|..+...+
T Consensus 151 kl~eVta~dR~sL~epf~~l~~rl 174 (198)
T KOG3883|consen 151 KLWEVTAMDRPSLYEPFTYLASRL 174 (198)
T ss_pred eEEEEEeccchhhhhHHHHHHHhc
Confidence 899999999999999999887654
|
|
| >TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=147.26 Aligned_cols=166 Identities=19% Similarity=0.198 Sum_probs=104.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-----ccCCCcceeEEEe----------------CCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----MPTLHPTSEELSM----------------GDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-----~~t~~~~~~~~~~----------------~~~~~~~~d~~g~~~ 77 (194)
.++.-|+++|++++|||||++++.+..+... +.+++.+...... ....+.+|||||++.
T Consensus 2 ~r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 2 LRSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 3566789999999999999999998866522 2223332211111 012388999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHH
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEV 143 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~ 143 (194)
+..++..+++.+|++++|+|+++..... ....+..+ .. .+.|+++++||+|+.+... .+++
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~q-t~e~i~~l-~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQ-TQEALNIL-RM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHh-HHHHHHHH-HH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9999998999999999999998732211 11222222 22 4789999999999864211 0111
Q ss_pred Hh-----------hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 144 RH-----------FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 144 ~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.. .+....-. .+.+...+ ......+++++||++|+|++++.+++..
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~-~e~~~~i~-~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFE-AERFDRVT-DFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCcc-HHhhhhhh-hcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 11 01111000 00000000 1123578999999999999999998864
|
This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=138.70 Aligned_cols=151 Identities=19% Similarity=0.220 Sum_probs=112.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRD 84 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~ 84 (194)
+-...++++++|.|++|||||+|.|.+.+-+.+++ |.+.-.+.+.++|..+.+.||.|..+.... ...
T Consensus 213 ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~ 292 (454)
T COG0486 213 ILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKK 292 (454)
T ss_pred hhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHH
Confidence 44688999999999999999999999998764444 555556788999999999999998764322 123
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+..+|.+++|+|.+.+.+-.... +.+ ....++|+++|.||.|+......... +...
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~--~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-~~~~---------------- 349 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLA--LIE----LLPKKKPIIVVLNKADLVSKIELESE-KLAN---------------- 349 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHH--HHH----hcccCCCEEEEEechhcccccccchh-hccC----------------
Confidence 477899999999999863222222 222 12367999999999999875553333 1111
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+||++|+|++.+.+.|.+.+
T Consensus 350 ---~~~~i~iSa~t~~Gl~~L~~~i~~~~ 375 (454)
T COG0486 350 ---GDAIISISAKTGEGLDALREAIKQLF 375 (454)
T ss_pred ---CCceEEEEecCccCHHHHHHHHHHHH
Confidence 13689999999999999999987754
|
|
| >TIGR01394 TypA_BipA GTP-binding protein TypA/BipA | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-19 Score=147.29 Aligned_cols=156 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC--CCCcc-----------------ccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND--RTAQH-----------------MPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|+++|+.++|||||+++++.. .+... ..|+......+.+++.++.+|||||+.++...+.
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 6899999999999999999863 22211 1123333346778889999999999999998888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~ 160 (194)
.+++.+|++++|+|+.+. ...+...+|..+.. .++|+++++||+|+..... .+++.+.+......
T Consensus 83 ~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~------- 150 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGAD------- 150 (594)
T ss_pred HHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccc-------
Confidence 899999999999999874 35666667766654 4689999999999865322 23344444322210
Q ss_pred ccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
.....++++++||++|. |++.+|+.+.+.+
T Consensus 151 ---~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l 190 (594)
T TIGR01394 151 ---DEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV 190 (594)
T ss_pred ---cccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence 01123679999999995 8999999998876
|
This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown. |
| >PRK04000 translation initiation factor IF-2 subunit gamma; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=142.59 Aligned_cols=159 Identities=19% Similarity=0.176 Sum_probs=103.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe---------------------C-----CE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM---------------------G-----DI 65 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~---------------------~-----~~ 65 (194)
.+++++++++|+.++|||||+.+|.+..... ...|.........+ + ..
T Consensus 6 ~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 6 VQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence 4688999999999999999999997642211 11222221110000 1 25
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----H
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----D 141 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~ 141 (194)
.+.+||+||++++..........+|++++|+|++++.........+..+... ...|+++++||+|+.+.... +
T Consensus 86 ~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~ 162 (411)
T PRK04000 86 RVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII---GIKNIVIVQNKIDLVSKERALENYE 162 (411)
T ss_pred EEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEEeeccccchhHHHHHH
Confidence 7999999999988776666667789999999999753222222223222111 23478999999998763222 2
Q ss_pred HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 142 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++...++. .....++++++||++|.|+++++++|.+.+
T Consensus 163 ~i~~~l~~--------------~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l 200 (411)
T PRK04000 163 QIKEFVKG--------------TVAENAPIIPVSALHKVNIDALIEAIEEEI 200 (411)
T ss_pred HHHHHhcc--------------ccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence 23322221 112247899999999999999999998754
|
|
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=131.45 Aligned_cols=169 Identities=21% Similarity=0.213 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccc-
Q psy2159 4 IWTKFREVLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA- 78 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~- 78 (194)
+...++..+..++... ....++|.|.|++|||||++++.+.+.. .+++|.+...+.++.+...++++||||.-+-
T Consensus 150 fL~~~r~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRP 229 (346)
T COG1084 150 FLRKARDHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRP 229 (346)
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCC
Confidence 4456777888888665 5556667799999999999999998753 6888999999999999999999999995421
Q ss_pred --------hhhHhhhhhcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhc
Q psy2159 79 --------RRVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148 (194)
Q Consensus 79 --------~~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~ 148 (194)
.......-+-.++|+|++|++.-. +.+.....+.++... .+.|+++|+||+|..+....+++...+.
T Consensus 230 l~ErN~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~---f~~p~v~V~nK~D~~~~e~~~~~~~~~~ 306 (346)
T COG1084 230 LEERNEIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKEL---FKAPIVVVINKIDIADEEKLEEIEASVL 306 (346)
T ss_pred hHHhcHHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHh---cCCCeEEEEecccccchhHHHHHHHHHH
Confidence 122233345578999999998754 455556677777555 4489999999999987656666666654
Q ss_pred ccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 149 LYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
... ......+++..+.+++.+-+.+..
T Consensus 307 ~~~----------------~~~~~~~~~~~~~~~d~~~~~v~~ 333 (346)
T COG1084 307 EEG----------------GEEPLKISATKGCGLDKLREEVRK 333 (346)
T ss_pred hhc----------------cccccceeeeehhhHHHHHHHHHH
Confidence 432 123567788888888877665544
|
|
| >KOG1489|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-19 Score=134.54 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=117.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-EEEEEEcCCCccch----h---hHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQAR----R---VWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~----~---~~~~~~~~~d~ 91 (194)
.+.++|.|++|||||++++...+.. ..++|+.|..+++.+++. .+++-|.||.-+.. . .+..+++.++.
T Consensus 198 dvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~ 277 (366)
T KOG1489|consen 198 DVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKG 277 (366)
T ss_pred ccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhhce
Confidence 5779999999999999999987653 678899999999999885 59999999965422 2 24455788999
Q ss_pred EEEEEECCCC---CChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCH--HHHHhhhcccCccCCCccCcccccC
Q psy2159 92 IVFIIDASDR---SRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASE--DEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 92 ii~v~d~~~~---~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
.+||+|++.. +.++.....+.++-.+ ....+.|.++|+||+|+++.... .++.+.++.
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~---------------- 341 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQN---------------- 341 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcCC----------------
Confidence 9999999998 7777777766666443 45577999999999998753222 334444422
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++++||++++|+.++.+.|.+.
T Consensus 342 ---~~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 342 ---PHVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred ---CcEEEeeeccccchHHHHHHHhhc
Confidence 369999999999999999988664
|
|
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.5e-19 Score=150.33 Aligned_cols=149 Identities=21% Similarity=0.231 Sum_probs=104.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh----------Hhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV----------WRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~----------~~~~~ 86 (194)
+..+|+++|+||||||||+|++++.+.. ....|.......+..++..+.++|+||..++... ...++
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3568999999999999999999986542 1223443444566777889999999998765321 22232
Q ss_pred --hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccc
Q psy2159 87 --PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 87 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
..+|++++|+|.++.+. ...++.++.+ .++|+++++||+|+.+... ..+..+..+..+
T Consensus 82 ~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG------------ 142 (772)
T PRK09554 82 LSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALSARLG------------ 142 (772)
T ss_pred hccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHHHHhC------------
Confidence 47899999999988543 3344445443 4789999999999864222 222222222222
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+++++||++|+|++++++.+.+.
T Consensus 143 -----~pVvpiSA~~g~GIdeL~~~I~~~ 166 (772)
T PRK09554 143 -----CPVIPLVSTRGRGIEALKLAIDRH 166 (772)
T ss_pred -----CCEEEEEeecCCCHHHHHHHHHHh
Confidence 679999999999999999998764
|
|
| >KOG0090|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=127.11 Aligned_cols=171 Identities=22% Similarity=0.327 Sum_probs=133.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhh---cCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP---AVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~---~~d~ii~v~d~ 98 (194)
-.++++|+.+||||+|.-+|..+.+..+.++..++.....+++....++|.||+++.+.-...++. .+.++|||+|+
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDS 118 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDS 118 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEec
Confidence 478899999999999999999998888888999999999999888999999999998886666665 78999999998
Q ss_pred CC-CCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCC--------------------
Q psy2159 99 SD-RSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG-------------------- 155 (194)
Q Consensus 99 ~~-~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~-------------------- 155 (194)
.. ......+.+.+.+++... .....|++|++||.|+.-+.+.+-+++.++++-...+
T Consensus 119 a~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~~~~~tl 198 (238)
T KOG0090|consen 119 ATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDIAKDFTL 198 (238)
T ss_pred cccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccccccccc
Confidence 54 334566667777777654 3567899999999999988888888777765431111
Q ss_pred --CccCccc-ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 --KEFTPRE-ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 --~~~~~~~-~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.++-- .+....+.|.++|++++ +++++-+|+.+.+
T Consensus 199 g~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 199 GKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred cccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 1111111 22335678999999999 8999999997754
|
|
| >PRK10218 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-19 Score=145.26 Aligned_cols=157 Identities=17% Similarity=0.223 Sum_probs=112.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC--CCCcc-------------ccCCCcc----eeEEEeCCEEEEEEEcCCCccchhhH
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND--RTAQH-------------MPTLHPT----SEELSMGDIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~--~~~~~-------------~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~~~~ 82 (194)
-+|+++|+.++|||||++++... .+... ..+.+.+ ...+.+++..+.+|||||+.++...+
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 48999999999999999999973 22211 1123333 23456678999999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcccCccCCCccC
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE---DEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~~~~~~~~~~~ 159 (194)
..+++.+|++++|+|+.+.. .......+..... .++|.++++||+|+...... +++.+.+.....
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~------- 153 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDA------- 153 (607)
T ss_pred HHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCc-------
Confidence 99999999999999998743 3344455555443 47899999999998764332 333333322110
Q ss_pred cccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
......++++++||++|. |+..+++.+.+.+
T Consensus 154 ---~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i 194 (607)
T PRK10218 154 ---TDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV 194 (607)
T ss_pred ---cccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence 011234789999999998 6899999988866
|
|
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=120.33 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=96.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc----cchhhHhhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV----QARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~----~~~~~~~~~~~~~d~ii~v~d 97 (194)
.|++++|+.|||||||+++|.+.... +..|. .+.+.+ .++||||.- .+.........++|.+++|.|
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~-~~KTq-----~i~~~~---~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR-YKKTQ-----AIEYYD---NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC-cCccc-----eeEecc---cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 38999999999999999999986442 21221 223332 458999944 233333444568999999999
Q ss_pred CCCCCC-hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 98 ASDRSR-FPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 98 ~~~~~~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
++++.+ |+- .+... ..+|+|-|+||+|+. ++...+..+++++..+ .. .+|++|
T Consensus 73 at~~~~~~pP------~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG--------------~~--~if~vS 127 (143)
T PF10662_consen 73 ATEPRSVFPP------GFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAG--------------VK--EIFEVS 127 (143)
T ss_pred CCCCCccCCc------hhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcC--------------CC--CeEEEE
Confidence 998643 222 11111 468999999999998 3556677777776644 22 369999
Q ss_pred cccCCChHHHHHHHhh
Q psy2159 176 VLKRQGFGNGFRWLAN 191 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~ 191 (194)
+.+|+|+++|.++|.+
T Consensus 128 ~~~~eGi~eL~~~L~~ 143 (143)
T PF10662_consen 128 AVTGEGIEELKDYLEE 143 (143)
T ss_pred CCCCcCHHHHHHHHhC
Confidence 9999999999999853
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >PRK04004 translation initiation factor IF-2; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=144.74 Aligned_cols=167 Identities=17% Similarity=0.232 Sum_probs=103.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEEe----CC-------E-----EEEEEEcCCCc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELSM----GD-------I-----VFTTHDLGGHV 76 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~~----~~-------~-----~~~~~d~~g~~ 76 (194)
..|+..|+++|++++|||||++++.+.......+ +.+.+...... .+ . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4678889999999999999999998765432222 33322211111 00 1 27899999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHH
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDE 142 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e 142 (194)
.+..++...+..+|++++|+|+++... ......+..+ .. .+.|+++++||+|+.+... ...
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~-~qt~e~i~~~-~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~ 157 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQ-PQTIEAINIL-KR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR 157 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCC-HhHHHHHHHH-HH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence 999988888899999999999987311 1112222222 22 4789999999999853111 011
Q ss_pred -----------HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 143 -----------VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 143 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+...+...+-.. ..+...+.+ ...++++++||++|+|++++++.+..
T Consensus 158 v~~~f~~~l~ev~~~L~~~g~~~-e~~~~~~~~-~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 158 VQQELEEKLYELIGQLSELGFSA-DRFDRVKDF-TKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCh-hhhhhhhcc-CCCceEeeccCCCCCChHHHHHHHHH
Confidence 111121111000 000000111 23578999999999999999988753
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=135.06 Aligned_cols=156 Identities=18% Similarity=0.238 Sum_probs=120.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~ 84 (194)
.+++++++|.|++|||||+|++.+.+=.- ...|.+.-...+++++.++.++||.|..+-.. -...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 46999999999999999999999987553 34455555677888999999999999653211 1234
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
.+..+|.+++|+|++.+ +......+..++.. .+++++|++||-|+.+. ...++.+..+....
T Consensus 257 aI~~a~vvllviDa~~~--~~~qD~~ia~~i~~---~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l----------- 320 (444)
T COG1160 257 AIERADVVLLVIDATEG--ISEQDLRIAGLIEE---AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKL----------- 320 (444)
T ss_pred HHhhcCEEEEEEECCCC--chHHHHHHHHHHHH---cCCCeEEEEEccccCCchhhHHHHHHHHHHHHh-----------
Confidence 57789999999999985 45555556666655 68999999999998774 55666666665544
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
......+++.+||++|.++.++|+++.+.
T Consensus 321 -~~l~~a~i~~iSA~~~~~i~~l~~~i~~~ 349 (444)
T COG1160 321 -PFLDFAPIVFISALTGQGLDKLFEAIKEI 349 (444)
T ss_pred -ccccCCeEEEEEecCCCChHHHHHHHHHH
Confidence 44556789999999999999999998764
|
|
| >cd04165 GTPBP1_like GTPBP1-like | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=126.86 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=101.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc-----------------cccC-------CCcc-----------------eeEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ-----------------HMPT-------LHPT-----------------SEELS 61 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~-----------------~~~t-------~~~~-----------------~~~~~ 61 (194)
+++++|+.++|||||++++....+.. ...| .+.+ .+.++
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 57899999999999999999765431 0001 1111 13344
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhh--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFP--AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
..+..+.+.|+||+.++.......+. .+|++++|+|+.+... ......+..+ .. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 55688999999999988665444443 6899999999877432 2233333333 33 4689999999999865333
Q ss_pred HHHH----HhhhcccCccC--------CCccCcccc-cCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 140 EDEV----RHFFGLYGLTT--------GKEFTPREI-LQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 140 ~~e~----~~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.++. .+.+...+... .+.-..... ......+++.+||.+|+|++++.+.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 3333 33332111000 000000111 1223458999999999999999988754
|
Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=121.97 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=97.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCCEEEEEEEcCCCcc----------chhhHhhhhh--
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ----------ARRVWRDYFP-- 87 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~----------~~~~~~~~~~-- 87 (194)
.|+++|++|+|||||++.+.+.... ...++.+.+.. .+..+ ..+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 3789999999999999999954443 44455444332 22333 3899999999543 2233333443
Q ss_pred -cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 -AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 -~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+++++++|......... ..+...+.. .+.|+++++||+|+................. . ...
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l----------~-~~~ 143 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKEL----------K-LFE 143 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHH----------H-hcc
Confidence 4578899999877532221 222222222 3589999999999865332222222222111 0 012
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||+++.|+.+++++|.+.+
T Consensus 144 ~~~~~~~~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 144 IDPPIILFSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHhC
Confidence 336789999999999999999998754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=143.78 Aligned_cols=155 Identities=19% Similarity=0.166 Sum_probs=103.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
-|+++|+.++|||||++++.+..... ...|+......+.. ++..+.+||+||++++.......+.++|++++|
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 46788999999999999999643221 23344433334433 457799999999998877667778899999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+|+++.. .....+.+. ++.. .+.| +++|+||+|+.+....++..+.+.... ........+++++
T Consensus 82 Vda~eg~-~~qT~ehl~-il~~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l----------~~~~~~~~~ii~V 146 (614)
T PRK10512 82 VACDDGV-MAQTREHLA-ILQL---TGNPMLTVALTKADRVDEARIAEVRRQVKAVL----------REYGFAEAKLFVT 146 (614)
T ss_pred EECCCCC-cHHHHHHHH-HHHH---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHH----------HhcCCCCCcEEEE
Confidence 9988742 233333333 2222 2345 579999999865322223222222110 0011223679999
Q ss_pred ccccCCChHHHHHHHhhh
Q psy2159 175 SVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~ 192 (194)
||++|.|+++++++|.+.
T Consensus 147 SA~tG~gI~~L~~~L~~~ 164 (614)
T PRK10512 147 AATEGRGIDALREHLLQL 164 (614)
T ss_pred eCCCCCCCHHHHHHHHHh
Confidence 999999999999999764
|
|
| >PRK12736 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-18 Score=136.70 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=107.0
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCC----------C---------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT----------A---------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
...+++++|+++|+.++|||||+++|++... . ....|.......+..++..+.++|+||+.
T Consensus 7 ~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 7 DRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred ccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 3467899999999999999999999986311 0 11112222223333456789999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCCH-----HHHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAASE-----DEVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~~-----~e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. .......+..+.. .++| +|+++||+|+.+.... +++...+...
T Consensus 87 ~f~~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 87 DYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 88776666678899999999988743 2333344443332 3567 6789999998642211 2333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC--------ChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ--------GFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~~i 193 (194)
. ......+++++||++|. ++.++++.+.+.+
T Consensus 162 ~------------~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l 200 (394)
T PRK12736 162 D------------FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI 200 (394)
T ss_pred C------------CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence 2 22234789999999983 6788888887654
|
|
| >COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.8e-18 Score=134.48 Aligned_cols=158 Identities=20% Similarity=0.239 Sum_probs=118.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
.+++=+.++|+-..|||||+..+.+.......+ |.......+..+ ...+.+.|||||+.|..++..-..-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 466778899999999999999999877653332 555555666664 36899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|+++.- .++..+-+. +....+.|+++.+||+|+++. .++.+...+...+ ...+.++ +...++
T Consensus 83 ILVVa~dDGv-~pQTiEAI~----hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~g-------l~~E~~g-g~v~~V 148 (509)
T COG0532 83 ILVVAADDGV-MPQTIEAIN----HAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYG-------LVPEEWG-GDVIFV 148 (509)
T ss_pred EEEEEccCCc-chhHHHHHH----HHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcC-------CCHhhcC-CceEEE
Confidence 9999998842 222222222 223378999999999999864 4555555555443 1122222 337899
Q ss_pred EeccccCCChHHHHHHHh
Q psy2159 173 MCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~ 190 (194)
++||++|+|+++|++.+.
T Consensus 149 pvSA~tg~Gi~eLL~~il 166 (509)
T COG0532 149 PVSAKTGEGIDELLELIL 166 (509)
T ss_pred EeeccCCCCHHHHHHHHH
Confidence 999999999999999875
|
|
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.7e-18 Score=119.20 Aligned_cols=154 Identities=19% Similarity=0.297 Sum_probs=108.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCcceeE--EEeCCEEEEEEEcCCCcc----------chhhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSEE--LSMGDIVFTTHDLGGHVQ----------ARRVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~----------~~~~~~~~~ 86 (194)
....|+++|.+++|||||||++++.+ .+.++.|.|.+..- ++.++ .+.++|.||..- ...+...|+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL 101 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEEYL 101 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHHHH
Confidence 55699999999999999999999966 57888888887643 33333 388999999542 122333344
Q ss_pred h---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccC
Q psy2159 87 P---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 87 ~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~ 159 (194)
+ +..++++++|+.++. ........+++.+ .+.|+++++||+|+...... ..+.+.+....
T Consensus 102 ~~R~~L~~vvlliD~r~~~--~~~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~-------- 168 (200)
T COG0218 102 EKRANLKGVVLLIDARHPP--KDLDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP-------- 168 (200)
T ss_pred hhchhheEEEEEEECCCCC--cHHHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC--------
Confidence 3 357889999998853 4444455555555 68999999999999874333 23333333221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+ ++..|+.++.|++++.+.|.+.+
T Consensus 169 -----~~~~~-~~~~ss~~k~Gi~~l~~~i~~~~ 196 (200)
T COG0218 169 -----PDDQW-VVLFSSLKKKGIDELKAKILEWL 196 (200)
T ss_pred -----Cccce-EEEEecccccCHHHHHHHHHHHh
Confidence 11222 88899999999999999998765
|
|
| >PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-19 Score=124.68 Aligned_cols=130 Identities=23% Similarity=0.368 Sum_probs=87.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEe---CCEEEEEEEcCCCccchhhHhhh---hhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARRVWRDY---FPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~~~~~~---~~~~d~ii~ 94 (194)
.-.++++|++|||||+|..+|..+....+.++..++.. ... .+..+.++|+||+++.+...... ...+.++||
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~~-~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIf 81 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNIA-YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIF 81 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SSEEEE-CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCce-EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEE
Confidence 34688999999999999999999977766666644443 222 34689999999999988754443 778999999
Q ss_pred EEECCC-CCChHHHHHHHHHHHhCC--CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC
Q psy2159 95 IIDASD-RSRFPESKYELDNLLADD--ALTDVPILILGNKIDIFDAASEDEVRHFFGLYG 151 (194)
Q Consensus 95 v~d~~~-~~~~~~~~~~~~~~~~~~--~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~ 151 (194)
|+|++. ........+++.+++... .....|++|++||.|+..+.+...++..++.+.
T Consensus 82 vvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei 141 (181)
T PF09439_consen 82 VVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEI 141 (181)
T ss_dssp EEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHH
T ss_pred EEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHH
Confidence 999974 334566667777776542 246799999999999998888888877776643
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B. |
| >PRK12735 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=132.31 Aligned_cols=161 Identities=19% Similarity=0.223 Sum_probs=105.3
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcC-------CCC------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKND-------RTA------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
+-.+++++++++|++++|||||+++|++. ++. ....|.......++.++..+.++||||+.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~ 86 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA 86 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence 34578899999999999999999999862 110 01112222223344456789999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-HH----HHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-ED----EVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~~----e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. .......+..+.. .++|.+ +++||+|+.+... .+ ++...+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 87766666678899999999998743 2333333433322 457755 6799999864211 12 333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC----------ChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~i 193 (194)
. ......+++++||.+|. ++.++++.|.+.+
T Consensus 162 ~------------~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 162 D------------FPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred C------------CCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 2 11224789999999984 6788888877643
|
|
| >PLN03126 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=134.08 Aligned_cols=155 Identities=19% Similarity=0.216 Sum_probs=103.2
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCC------Cc-------------cccCCCcceeEEEeCCEEEEE
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT------AQ-------------HMPTLHPTSEELSMGDIVFTT 69 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~------~~-------------~~~t~~~~~~~~~~~~~~~~~ 69 (194)
|...+.....+++++++++|++++|||||+++|+.... .. ...|+......++.++..+.+
T Consensus 69 ~~~~~~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~l 148 (478)
T PLN03126 69 RAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAH 148 (478)
T ss_pred HHHHhhhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEE
Confidence 34445555678899999999999999999999995211 00 111222223345556789999
Q ss_pred EEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HH
Q psy2159 70 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EV 143 (194)
Q Consensus 70 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~ 143 (194)
+|+||+.++.......+..+|++++|+|+.+.. .....+.+..+.. .++| +++++||+|+.+... .+ ++
T Consensus 149 iDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i 223 (478)
T PLN03126 149 VDCPGHADYVKNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEV 223 (478)
T ss_pred EECCCHHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence 999999988776677778899999999988753 3344444444433 3667 788999999865211 22 23
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCC
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 180 (194)
...+.... +....++++++||.+|.
T Consensus 224 ~~~l~~~g------------~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 224 RELLSSYE------------FPGDDIPIISGSALLAL 248 (478)
T ss_pred HHHHHhcC------------CCcCcceEEEEEccccc
Confidence 33333322 22245889999998874
|
|
| >TIGR00485 EF-Tu translation elongation factor TU | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=131.97 Aligned_cols=160 Identities=18% Similarity=0.182 Sum_probs=103.0
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC-------C-----C-------ccccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR-------T-----A-------QHMPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~-------~-----~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
+...+++++|+++|+.++|||||+++|.+.. + . ....|.......++.++..+.+|||||+
T Consensus 6 ~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 6 FERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred hcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 4456788999999999999999999997420 0 0 0222333333334445678999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-H----HHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-E----DEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~----~e~~~~~~~ 149 (194)
+++..........+|++++|+|+.+.. .......+..+.. .+.|.+ +++||+|+.+... . +++...++.
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~-~~qt~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~ 160 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence 988766666677899999999998743 2333333444332 356655 6899999865211 1 234444433
Q ss_pred cCccCCCccCcccccCCcceEEEEeccccCC--------ChHHHHHHHhh
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLKRQ--------GFGNGFRWLAN 191 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------~v~~l~~~l~~ 191 (194)
.. .....++++++||.+|. ++.++++++.+
T Consensus 161 ~~------------~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~ 198 (394)
T TIGR00485 161 YD------------FPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDE 198 (394)
T ss_pred cC------------CCccCccEEECccccccccCCchhHhHHHHHHHHHh
Confidence 22 22233789999999875 34556666543
|
This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation. |
| >KOG0096|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=120.18 Aligned_cols=156 Identities=20% Similarity=0.307 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....+++++|..|.||||++++....+|. .+.+|+|.......+. ..++..|||.|++.+......++-...+.+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi 87 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI 87 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence 35678899999999999999999999998 5888999877654432 379999999999999888888887788999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+.||++..-++.++..|..++.... .++|+++++||.|.........-... .......+++
T Consensus 88 imFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r~~k~k~v~~-----------------~rkknl~y~~ 148 (216)
T KOG0096|consen 88 IMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKARKVKAKPVSF-----------------HRKKNLQYYE 148 (216)
T ss_pred EEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceecccccccccccee-----------------eecccceeEE
Confidence 9999999888999999999998764 56999999999997543212122222 2334478999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
.||+++.|++.-|-|+.+++
T Consensus 149 iSaksn~NfekPFl~LarKl 168 (216)
T KOG0096|consen 149 ISAKSNYNFERPFLWLARKL 168 (216)
T ss_pred eecccccccccchHHHhhhh
Confidence 99999999999999998875
|
|
| >KOG1673|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=116.42 Aligned_cols=160 Identities=21% Similarity=0.225 Sum_probs=125.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..-+++|.++|.+..|||||+-.+.+..+. .+..|.|.+. +++...+ ..+.+||.+|++++..+.+....++-++
T Consensus 17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI 96 (205)
T KOG1673|consen 17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI 96 (205)
T ss_pred cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence 345679999999999999999999999886 4566677763 5566665 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH---HHHhhhcccCccCCCccCcccccCCcce
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED---EVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~---e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++||++.+++...+..|+.+..... ...-.|++++|.|+.-..+++ ++......+ .+..+.
T Consensus 97 lFmFDLt~r~TLnSi~~WY~QAr~~N--ktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~Y-------------Ak~mnA 161 (205)
T KOG1673|consen 97 LFMFDLTRRSTLNSIKEWYRQARGLN--KTAIPILVGTKYDLFIDLPPELQETISRQARKY-------------AKVMNA 161 (205)
T ss_pred EEEEecCchHHHHHHHHHHHHHhccC--CccceEEeccchHhhhcCCHHHHHHHHHHHHHH-------------HHHhCC
Confidence 99999999999999999999986542 333447899999976644442 233222221 233446
Q ss_pred EEEEeccccCCChHHHHHHHhhh
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..+.||+.+..||+++|.-+..+
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAk 184 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAK 184 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHH
Confidence 78999999999999999877654
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.2e-17 Score=126.13 Aligned_cols=154 Identities=19% Similarity=0.286 Sum_probs=114.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC-CEEEEEEEcCCCccc--------hhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQA--------RRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~--------~~~~~~~~ 86 (194)
..-..|.++|-.++|||||+|++++.... +.+.|.+++...+.++ +..+.+-||.|.-+. ........
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 45567889999999999999999977643 6899999999999987 589999999995431 12223335
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|.++.|+|++++.....+ .-...++..-...++|+|+|.||+|+..+.. ....+.. ..
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---~~~~~~~---------------~~ 330 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---ILAELER---------------GS 330 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---hhhhhhh---------------cC
Confidence 679999999999999543333 3444555554556699999999999866432 1122211 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.+||++|.|++.|.+.|.+.+
T Consensus 331 --~~~v~iSA~~~~gl~~L~~~i~~~l 355 (411)
T COG2262 331 --PNPVFISAKTGEGLDLLRERIIELL 355 (411)
T ss_pred --CCeEEEEeccCcCHHHHHHHHHHHh
Confidence 1589999999999999999998765
|
|
| >KOG1423|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-17 Score=122.36 Aligned_cols=166 Identities=23% Similarity=0.244 Sum_probs=109.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh------------h
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------------V 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------------~ 81 (194)
..+.++++++|.|++|||||.|.+.+.+.+. +..|.....+.+..+...+.++||||.-.-.. -
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 3577899999999999999999999998763 44455555677888889999999999543211 1
Q ss_pred HhhhhhcCCEEEEEEECCCCCC--hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCH----------------HH
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSR--FPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASE----------------DE 142 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~----------------~e 142 (194)
....+..+|+++.++|+++... ...+...+..+ ...|-+++.||+|.... ... .+
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~y------s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEY------SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHH------hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 1224667999999999996322 22222333333 46789999999997641 001 11
Q ss_pred HHhhhcccCccCCCccCcccccCCcc-eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRP-MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.... .-+..+..+++.. -.+|.+||++|+|++++.++|+.+.
T Consensus 223 v~~~f~~~p----~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa 270 (379)
T KOG1423|consen 223 VQEKFTDVP----SDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQA 270 (379)
T ss_pred HHHHhccCC----cccccccccCcccceeEEEEecccccCHHHHHHHHHhcC
Confidence 111111100 0111122223322 2599999999999999999998764
|
|
| >CHL00071 tufA elongation factor Tu | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-17 Score=132.47 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=98.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-------c------------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-------Q------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-------~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..+++++++++|++++|||||+++|++.... . ...|.......++.++..+.+.|+||+.+
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3578899999999999999999999964211 0 11122222233445667899999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYG 151 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~ 151 (194)
+.......+..+|++++|+|+.... .......+..+.. .++| +|+++||+|+.+... .+ ++...+....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 8776666788999999999998643 2333344443332 4567 778999999975221 12 3333333322
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.....++++++||.+|.+
T Consensus 163 ------------~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 ------------FPGDDIPIVSGSALLALE 180 (409)
T ss_pred ------------CCCCcceEEEcchhhccc
Confidence 122347899999998863
|
|
| >cd04167 Snu114p Snu114p subfamily | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-17 Score=121.94 Aligned_cols=108 Identities=21% Similarity=0.303 Sum_probs=76.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCcc------------cc----------CCCcceeEEEe-----CCEEEEEEEcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQH------------MP----------TLHPTSEELSM-----GDIVFTTHDLGGH 75 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~------------~~----------t~~~~~~~~~~-----~~~~~~~~d~~g~ 75 (194)
+|+++|+.|+|||||+++++....... .. |.......+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 588999999999999999987543211 01 11111122222 2378999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.++......++..+|++++|+|+++..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9988888888999999999999987655432 333343322 358999999999975
|
Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs. |
| >PLN00043 elongation factor 1-alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=132.32 Aligned_cols=151 Identities=17% Similarity=0.112 Sum_probs=103.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC--C-------------------------c-------cccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT--A-------------------------Q-------HMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~--~-------------------------~-------~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+.++|||||+.+|+...- . . ...|+......++.
T Consensus 3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 457899999999999999999998874211 0 0 11123333445566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCCh-------HHHHHHHHHHHhCCCCCCC-cEEEEeeCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF-------PESKYELDNLLADDALTDV-PILILGNKIDI 134 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~-piiiv~nK~D~ 134 (194)
++..++++|+||+++|.......+..+|++++|+|+++. .| ......+..... .++ ++|+++||+|+
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccC
Confidence 778999999999999998888889999999999999873 23 233333333222 355 57889999997
Q ss_pred CC-CCC-------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 135 FD-AAS-------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 135 ~~-~~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+ ... .+++...++..+ .....++|+++||.+|+|+.+
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g------------~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVG------------YNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeccccccccc
Confidence 62 111 234444444333 333357899999999999853
|
|
| >PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=123.91 Aligned_cols=163 Identities=14% Similarity=0.265 Sum_probs=101.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeC-CEEEEEEEcCCCccchh-----hHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-----~~~~~~~~~d~i 92 (194)
||+++|+.||||||+.+.++.+..+ ...+|..++...+... ...+++||+||+..+.. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7899999999999999999987655 3557777777777654 57999999999986544 346678999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
|||+|+...+ +.....++...++. ...++..+.+.++|+|+..+...+++.+.....-. ..........+.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~------~~~~~~~~~~~~ 153 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIR------DELEDLGIEDIT 153 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHH------HHHHHTT-TSEE
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHH------HHhhhccccceE
Confidence 9999998544 44444444443332 34589999999999998763222222222111000 000011112478
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+|.-+ +.+-++|..+++.+
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKL 175 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTT
T ss_pred EEeccCcC-cHHHHHHHHHHHHH
Confidence 99999988 58999999988765
|
RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A. |
| >PRK00049 elongation factor Tu; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=130.57 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=105.7
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
+..+++++++++|+.++|||||+++|++.... ....|.......+..++..+.+.||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 44578899999999999999999999863110 11112332233344456789999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCCCC-H----HHHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDAAS-E----DEVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~~~-~----~e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.... .......+..+.. .+.|.+ +++||+|+.+... . .++.+.+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 87776666688999999999998743 2333344433322 457876 6899999864211 1 1333333332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCC----------ChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQ----------GFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~----------~v~~l~~~l~~~ 192 (194)
. ......+++++||.+|. ++..+++.|.+.
T Consensus 162 ~------------~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~ 201 (396)
T PRK00049 162 D------------FPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY 201 (396)
T ss_pred C------------CCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence 2 22235789999999875 567788877654
|
|
| >PRK13351 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.7e-17 Score=136.51 Aligned_cols=113 Identities=19% Similarity=0.147 Sum_probs=87.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC--------------C-------ccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT--------------A-------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+..+|+++|+.|+|||||++++....- . ....|+......+..++..+.+|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 345899999999999999999985321 0 1333555556678888999999999999998
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
...+..+++.+|++++|+|+++....... ..|..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~~----~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQADR----YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHh----cCCCEEEEEECCCCCCC
Confidence 88888899999999999999886554433 33433322 47899999999998763
|
|
| >cd01886 EF-G Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.8e-17 Score=121.77 Aligned_cols=109 Identities=18% Similarity=0.134 Sum_probs=81.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--C-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--A-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++++|||||++++....- . ....|+......+..++..+.++||||+.++...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 578999999999999999974211 0 0112334445667788899999999999988888
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+...++.+|++++|+|+.+.. .......+..+.. .++|+++++||+|+..
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGV-EPQTETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCC-CHHHHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 888899999999999998743 2223333443332 4689999999999875
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta |
| >PTZ00141 elongation factor 1- alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.5e-17 Score=131.28 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=103.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC--C--------------------------------ccccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT--A--------------------------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~--~--------------------------------~~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+.++|||||+.+|+...- . ....|.......++.
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 457889999999999999999999875210 0 011133334455667
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---Ch---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDNLLADDALTDVP-ILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 135 (194)
++..+.++|+||+.++.......+..+|++++|+|++... .+ .+....+..+.. .++| +|+++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccc
Confidence 7889999999999998887777788999999999998742 11 233444443322 3555 67999999953
Q ss_pred C----CCCHHHHHh----hhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 136 D----AASEDEVRH----FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 136 ~----~~~~~e~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
. ....+++.+ .+.... .....++++++||.+|+|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g------------~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVG------------YNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcC------------CCcccceEEEeecccCCCccc
Confidence 2 122333333 333222 222358899999999999864
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=132.48 Aligned_cols=145 Identities=21% Similarity=0.263 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhh--hcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYF--PAV 89 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~--~~~ 89 (194)
..++.++|+|++|||||.|++++.+.. ....|++.-.+.+.+.+..+++.|+||--... ...+.++ ...
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 456899999999999999999987653 45567777778888999999999999954322 2333333 357
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|+++-|+|+++.+ ..-..-.++++ -+.|++++.|++|..+ ..+.+++.+.++
T Consensus 83 D~ivnVvDAtnLe---RnLyltlQLlE----~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG----------------- 138 (653)
T COG0370 83 DLIVNVVDATNLE---RNLYLTLQLLE----LGIPMILALNMIDEAKKRGIRIDIEKLSKLLG----------------- 138 (653)
T ss_pred CEEEEEcccchHH---HHHHHHHHHHH----cCCCeEEEeccHhhHHhcCCcccHHHHHHHhC-----------------
Confidence 9999999999954 44444445544 4789999999999755 566666666664
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++.+.+.+.
T Consensus 139 ---vPVv~tvA~~g~G~~~l~~~i~~~ 162 (653)
T COG0370 139 ---VPVVPTVAKRGEGLEELKRAIIEL 162 (653)
T ss_pred ---CCEEEEEeecCCCHHHHHHHHHHh
Confidence 789999999999999999998763
|
|
| >KOG1145|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.9e-17 Score=129.15 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=118.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+.+++.-+.++|+-..|||||+..+.+........ |.+...-.+.. +|.++++.|||||..|.+++.......|.+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 55688888899999999999999999887653222 44444444444 568999999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+..+|.- ..+.. +.+++....+.|+++.+||+|++.. +++.+...+-.++ -..+ .-...+.++
T Consensus 229 VLVVAadDGV-mpQT~----EaIkhAk~A~VpiVvAinKiDkp~a-~pekv~~eL~~~g-------i~~E-~~GGdVQvi 294 (683)
T KOG1145|consen 229 VLVVAADDGV-MPQTL----EAIKHAKSANVPIVVAINKIDKPGA-NPEKVKRELLSQG-------IVVE-DLGGDVQVI 294 (683)
T ss_pred EEEEEccCCc-cHhHH----HHHHHHHhcCCCEEEEEeccCCCCC-CHHHHHHHHHHcC-------ccHH-HcCCceeEE
Confidence 9999988842 33322 3334445578999999999998764 4555555554433 1111 122346899
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|.|++.|-++++-
T Consensus 295 piSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 295 PISALTGENLDLLEEAILL 313 (683)
T ss_pred EeecccCCChHHHHHHHHH
Confidence 9999999999999988753
|
|
| >cd04169 RF3 RF3 subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=121.39 Aligned_cols=121 Identities=22% Similarity=0.258 Sum_probs=84.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--Ccc-----------------------ccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--AQH-----------------------MPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~~~-----------------------~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
+|+++|++|+|||||+++++...- ... ..++......++.++.++.+|||||+.+
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 688999999999999999985321 110 0111222346777889999999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFG 148 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~ 148 (194)
+.......++.+|++++|+|+++... .....++ ..... .++|+++++||+|+..... .+++++.++
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~-~~~~~---~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~ 152 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLF-EVCRL---RGIPIITFINKLDREGRDPLELLDEIEEELG 152 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHH-HHHHh---cCCCEEEEEECCccCCCCHHHHHHHHHHHHC
Confidence 88766777899999999999987432 2223333 33332 5789999999999866432 355555443
|
Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts. |
| >TIGR02034 CysN sulfate adenylyltransferase, large subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=130.04 Aligned_cols=149 Identities=19% Similarity=0.183 Sum_probs=95.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--c----------------------------------cccCCCcceeEEEeCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--Q----------------------------------HMPTLHPTSEELSMGDI 65 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~----------------------------------~~~t~~~~~~~~~~~~~ 65 (194)
++++++|+.++|||||+++++...-. . ...|.+.....++.++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999999743211 0 01123333455666778
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHH
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEV 143 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~ 143 (194)
.+.++||||+.++.......+..+|++++|+|+..... .+....+..+... ...++++++||+|+..... .+++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~-~qt~~~~~~~~~~---~~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVL-EQTRRHSYIASLL---GIRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-cccHHHHHHHHHc---CCCcEEEEEEecccccchHHHHHHH
Confidence 99999999999887666667889999999999876432 2222222222221 2346899999999865211 1222
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+.+.... ........+++++||++|+|+++
T Consensus 157 ~~~~~~~~----------~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFA----------EQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHH----------HHcCCCCccEEEeecccCCCCcc
Confidence 33222110 00122246799999999999886
|
Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase). |
| >cd04104 p47_IIGP_like p47 (47-kDa) family | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.5e-17 Score=118.33 Aligned_cols=160 Identities=14% Similarity=0.065 Sum_probs=96.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCc---ce--eEEEeC-CEEEEEEEcCCCccchhhH-----hhhhhc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHP---TS--EELSMG-DIVFTTHDLGGHVQARRVW-----RDYFPA 88 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~---~~--~~~~~~-~~~~~~~d~~g~~~~~~~~-----~~~~~~ 88 (194)
+++|+++|.+|+|||||+|.+.+..... ..++.+. +. ..+..+ ...+.+||+||..+..... ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4689999999999999999999865432 2222221 11 111111 2478999999986432211 222567
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-C--------CHHHHHhhhcccCccCCCccC
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-A--------SEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~--------~~~e~~~~~~~~~~~~~~~~~ 159 (194)
+|+++++.+ + ++......+...+.. .+.|+++|+||+|+... . ..+++.+.+...- . .
T Consensus 81 ~d~~l~v~~--~--~~~~~d~~~~~~l~~---~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~-----~-~ 147 (197)
T cd04104 81 YDFFIIISS--T--RFSSNDVKLAKAIQC---MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC-----L-E 147 (197)
T ss_pred cCEEEEEeC--C--CCCHHHHHHHHHHHH---hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH-----H-H
Confidence 888888743 2 355555555555544 36899999999998431 1 1222222221110 0 0
Q ss_pred cccccCCcceEEEEeccc--cCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVL--KRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~--~~~~v~~l~~~l~~~i 193 (194)
.....+....+++.+|+. .+.++..+.+.+...|
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l 183 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDL 183 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHh
Confidence 000112334679999998 6789999999998765
|
The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei |
| >PLN03127 Elongation factor Tu; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-16 Score=126.98 Aligned_cols=161 Identities=19% Similarity=0.234 Sum_probs=103.9
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcC------CCC-------------ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKND------RTA-------------QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~------~~~-------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
...+++++|+++|+.++|||||+++|.+. ... ....|.+.....++.++..+.++||||+.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 34678999999999999999999999732 100 02223444344455566889999999998
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhccc
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLY 150 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~ 150 (194)
++.......+..+|++++|+|+.+.. ..+....+..+.. .++| +|+++||+|+.+... .+ ++.+.+...
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~ 210 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFY 210 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHh
Confidence 87665555567799999999987643 2333333333322 4678 578899999865211 11 222222221
Q ss_pred CccCCCccCcccccCCcceEEEEeccc---cCCC-------hHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVL---KRQG-------FGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~~-------v~~l~~~l~~~i 193 (194)
. .....++++++||. +|.| +.++++++.+.+
T Consensus 211 ~------------~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 211 K------------FPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred C------------CCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 1 22234788898875 4554 778888887654
|
|
| >cd04170 EF-G_bact Elongation factor G (EF-G) subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-17 Score=123.05 Aligned_cols=110 Identities=19% Similarity=0.180 Sum_probs=82.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|++|+|||||++++...... . ...|.......+.+++..+.+|||||+.++...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5789999999999999998753211 0 122334445667778899999999999988777
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..++..+|++++|+|++...... ....|..+.. .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~-~~~~~~~~~~----~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVG-TEKLWEFADE----AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCccCCC
Confidence 788899999999999998865433 2233333322 46899999999998764
|
Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group |
| >PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=131.92 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=98.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--c------------cc----------------------cCCCcceeEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q------------HM----------------------PTLHPTSEELS 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~------------~~----------------------~t~~~~~~~~~ 61 (194)
.+.+++|+++|+.++|||||+++|+...-. . .. .|+......++
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 478899999999999999999999854321 1 01 12222334455
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--C
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA--S 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~ 139 (194)
.++..+.++||||+..+.......+..+|++++|+|+..... ......+... ... ...|+++++||+|+.... .
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~-~qt~~~~~l~-~~l--g~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVL-DQTRRHSFIA-TLL--GIKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcc-ccchHHHHHH-HHh--CCCceEEEEEeeccccchhHH
Confidence 667899999999999886655555789999999999976431 1111111111 111 235789999999986421 1
Q ss_pred HHHHHhhhcccCccCCCccCcccccC-CcceEEEEeccccCCChHHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l 185 (194)
.+++.+.+.... .... ....+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~----------~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFA----------EQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHH----------HhcCCCCCceEEEEEeecCCCcccc
Confidence 233333332111 0011 23478999999999999764
|
|
| >PRK00741 prfC peptide chain release factor 3; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=128.90 Aligned_cols=124 Identities=22% Similarity=0.243 Sum_probs=86.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC--Cc---c--------------------ccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT--AQ---H--------------------MPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~--~~---~--------------------~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+.-+|+++|++++|||||+++++...- .. + ..|+......+.+++..+.+|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 455899999999999999999974211 00 0 0012222345777889999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFG 148 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~ 148 (194)
+.++......+++.+|++++|+|+++.. ......++... .. .++|+++++||+|+..... .+++++.+.
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~-~~---~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~ 160 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGV-EPQTRKLMEVC-RL---RDTPIFTFINKLDRDGREPLELLDEIEEVLG 160 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCC-CHHHHHHHHHH-Hh---cCCCEEEEEECCcccccCHHHHHHHHHHHhC
Confidence 9988887777889999999999998743 22333444333 22 5789999999999876433 245555443
|
|
| >cd01885 EF2 EF2 (for archaea and eukarya) | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=115.20 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=78.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEeC----------CEEEEEEEcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSMG----------DIVFTTHDLG 73 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~d~~ 73 (194)
+|+++|+.++|||||+.+|....-. . ...|+........+. +..+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6889999999999999999854211 0 011222222222332 5789999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
|+.++......+++.+|++++|+|+.+...... ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999988899999999999999988654433 333444333 467999999999975
|
Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco |
| >PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=128.19 Aligned_cols=163 Identities=17% Similarity=0.139 Sum_probs=105.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcceeEE---------------EeC-------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTSEEL---------------SMG------------- 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~~~~---------------~~~------------- 63 (194)
.+++++|.++|+-..|||||+.+|.+..... ..-|+....... .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3678899999999999999999999864431 111211111100 010
Q ss_pred -----CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 64 -----DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 64 -----~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
...+.++|+||++.+-+.....+..+|++++|+|+.+.....+..+.+..+ ... .-.|+++++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~l--gi~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIM--KLKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHc--CCCcEEEEEecccccCHH
Confidence 247899999999988776666688899999999998742223333333322 211 235789999999987522
Q ss_pred CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++..+.+.... ........+++++||++|.|+++|++.|.+.+
T Consensus 188 ~~~~~~~ei~~~l----------~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l 232 (460)
T PTZ00327 188 QAQDQYEEIRNFV----------KGTIADNAPIIPISAQLKYNIDVVLEYICTQI 232 (460)
T ss_pred HHHHHHHHHHHHH----------HhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence 2222222222111 00112357899999999999999999998654
|
|
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-16 Score=119.02 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=57.7
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe------------------------CCEEEEEEEcCCC-
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM------------------------GDIVFTTHDLGGH- 75 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~------------------------~~~~~~~~d~~g~- 75 (194)
|+++|.|++|||||+|++++..+. .++.|..++.+.... ....+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 478999999999999999988753 345666776654432 2257999999998
Q ss_pred ---ccchhhHhh---hhhcCCEEEEEEECCC
Q psy2159 76 ---VQARRVWRD---YFPAVDAIVFIIDASD 100 (194)
Q Consensus 76 ---~~~~~~~~~---~~~~~d~ii~v~d~~~ 100 (194)
.++..+... .++.+|++++|+|++.
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 344444444 4889999999999973
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=116.21 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=109.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh-------hHhhhhhcCCE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVDA 91 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ 91 (194)
.+++++|+|.+|||||++.+++.+.. ..++|..+..+.+++.+..+++.|+||.-+..+ ......+.||+
T Consensus 64 a~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADl 143 (365)
T COG1163 64 ATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADL 143 (365)
T ss_pred eEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCE
Confidence 37899999999999999999987643 678899999999999999999999998543221 23345789999
Q ss_pred EEEEEECCCCCC-hHHHHH----------------------------------------HHHHHHhCC------------
Q psy2159 92 IVFIIDASDRSR-FPESKY----------------------------------------ELDNLLADD------------ 118 (194)
Q Consensus 92 ii~v~d~~~~~~-~~~~~~----------------------------------------~~~~~~~~~------------ 118 (194)
+++|+|+..... .+.+.. .+..++...
T Consensus 144 IiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~d 223 (365)
T COG1163 144 IIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRED 223 (365)
T ss_pred EEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecC
Confidence 999999986443 111111 111111110
Q ss_pred ------------CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHH
Q psy2159 119 ------------ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGF 186 (194)
Q Consensus 119 ------------~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~ 186 (194)
+..-+|.++|.||+|+.. .+++....+. ...+++||+.+.|++++.
T Consensus 224 vTlDd~id~l~~nrvY~p~l~v~NKiD~~~---~e~~~~l~~~-------------------~~~v~isa~~~~nld~L~ 281 (365)
T COG1163 224 VTLDDLIDALEGNRVYKPALYVVNKIDLPG---LEELERLARK-------------------PNSVPISAKKGINLDELK 281 (365)
T ss_pred CcHHHHHHHHhhcceeeeeEEEEecccccC---HHHHHHHHhc-------------------cceEEEecccCCCHHHHH
Confidence 112378899999999866 3444444432 358999999999999999
Q ss_pred HHHhhhc
Q psy2159 187 RWLANYI 193 (194)
Q Consensus 187 ~~l~~~i 193 (194)
+.|.+.+
T Consensus 282 e~i~~~L 288 (365)
T COG1163 282 ERIWDVL 288 (365)
T ss_pred HHHHHhh
Confidence 9998865
|
|
| >PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.9e-16 Score=131.45 Aligned_cols=153 Identities=18% Similarity=0.127 Sum_probs=98.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--------------c----------------------ccCCCcceeEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--------------H----------------------MPTLHPTSEELS 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--------------~----------------------~~t~~~~~~~~~ 61 (194)
.++.++|+++|++++|||||+++|+...-.. . ..|+......++
T Consensus 21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~ 100 (632)
T PRK05506 21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA 100 (632)
T ss_pred CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence 5677899999999999999999998643210 0 012223334556
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CC
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--AS 139 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~ 139 (194)
.++..+.++||||+.++.......+..+|++++|+|+..... ......+..+... ..+|+++++||+|+.+. ..
T Consensus 101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~ 176 (632)
T PRK05506 101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEV 176 (632)
T ss_pred cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHH
Confidence 677889999999998876655556889999999999976432 2222222222111 23678999999998641 11
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+++...+.... ........+++++||++|.|+.+
T Consensus 177 ~~~i~~~i~~~~----------~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 177 FDEIVADYRAFA----------AKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHH----------HHcCCCCccEEEEecccCCCccc
Confidence 223333322110 00122336799999999999874
|
|
| >COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=122.53 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=103.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCC------------------------Cc----------cccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRT------------------------AQ----------HMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~------------------------~~----------~~~t~~~~~~~~~~ 62 (194)
..+++++++++|+..+|||||+-+|+..-- +. ..-|+......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 357899999999999999999999986411 00 01122333345566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---C---hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---R---FPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~---~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+.+.+++.|+||+..+-.-....++.+|+.|+|+|+.+.+ + -.+.++. .++.. ...-..+||++||+|+.+
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH--~~La~-tlGi~~lIVavNKMD~v~ 159 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREH--AFLAR-TLGIKQLIVAVNKMDLVS 159 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHH--HHHHH-hcCCceEEEEEEcccccc
Confidence 6788999999999988777677788999999999998864 1 1111211 11111 113567899999999986
Q ss_pred --CCCHHHHHhhhcccCccCCCccCcccc--cCCcceEEEEeccccCCChHH
Q psy2159 137 --AASEDEVRHFFGLYGLTTGKEFTPREI--LQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 137 --~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
....+++.+.+..+. +. +....++|+++||.+|.|+.+
T Consensus 160 wde~rf~ei~~~v~~l~----------k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLL----------KMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHH----------HHcCCCccCCeEEecccccCCcccc
Confidence 333444444443311 11 233357899999999999865
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.71 E-value=7e-16 Score=102.25 Aligned_cols=103 Identities=24% Similarity=0.373 Sum_probs=73.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhhhcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYFPAV 89 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~~~~ 89 (194)
+|+++|.+|+|||||+|+|++.+.. ....|.......+.+++..+.++||||..... ......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986543 23445555566778899999999999965321 1122334789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
|++++|+|.+++. -+.....+..+ + .++|+++|+||
T Consensus 81 d~ii~vv~~~~~~-~~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPI-TEDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHS-HHHHHHHHHHH-H----TTSEEEEEEES
T ss_pred CEEEEEEECCCCC-CHHHHHHHHHH-h----cCCCEEEEEcC
Confidence 9999999977621 12223333333 2 67899999998
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.8e-17 Score=128.56 Aligned_cols=162 Identities=17% Similarity=0.236 Sum_probs=120.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce---eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS---EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
......||+++|..|+||||||-.+...+++...|..-+.+ ..+.-......+.|++..++.+......++.+|++.
T Consensus 5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~ 84 (625)
T KOG1707|consen 5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVIC 84 (625)
T ss_pred cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEE
Confidence 46788999999999999999999999999875444322221 233334466899999877777777677799999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCCCCCH--HH-HHhhhcccCccCCCccCcccccCCcc
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFDAASE--DE-VRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~~~~~--~e-~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++++++++.+.+...|..++.+.. ..+.|+|+|+||+|....... +. +........ ..
T Consensus 85 lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~---------------Ei 149 (625)
T KOG1707|consen 85 LVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFA---------------EI 149 (625)
T ss_pred EEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhH---------------HH
Confidence 99999999999999876666665432 367999999999998773222 22 222322211 11
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
-..++|||++-.++.++|....+.+
T Consensus 150 EtciecSA~~~~n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 150 ETCIECSALTLANVSELFYYAQKAV 174 (625)
T ss_pred HHHHhhhhhhhhhhHhhhhhhhhee
Confidence 2379999999999999999877653
|
|
| >TIGR00503 prfC peptide chain release factor 3 | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-15 Score=123.69 Aligned_cols=113 Identities=19% Similarity=0.197 Sum_probs=80.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccc------------------------cCCCcceeEEEeCCEEEEEEEcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHM------------------------PTLHPTSEELSMGDIVFTTHDLG 73 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~------------------------~t~~~~~~~~~~~~~~~~~~d~~ 73 (194)
.+.-+|+++|++++|||||+++++... ..... .|+......+++++..+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 456699999999999999999986321 11100 01111234567788999999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|+.++.......++.+|++++|+|+++.. ......++ ..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~-~~~~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLM-EVTRL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHH-HHHHh---cCCCEEEEEECccccC
Confidence 99988776677789999999999998732 22333333 33333 5789999999999864
|
This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus. |
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-16 Score=118.94 Aligned_cols=155 Identities=21% Similarity=0.297 Sum_probs=111.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC---CccccCCCcceeEEEeCC-EEEEEEEcCCCccchh-------hHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT---AQHMPTLHPTSEELSMGD-IVFTTHDLGGHVQARR-------VWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~---~~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~~~-------~~~~~~~~~d~ 91 (194)
.+.++|.|++|||||++.+...+. ..+++|..|+.+.+...+ ..+.+-|.||.-+..+ .+..+++.+.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~v 240 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRV 240 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhhe
Confidence 466899999999999999998764 378899999999998744 6799999999664321 24455778999
Q ss_pred EEEEEECCCCCC---hHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 92 IVFIIDASDRSR---FPESKYELDNLLAD-DALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 92 ii~v~d~~~~~~---~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++.|+|++..+. .++......++..+ ....++|.+||+||+|+..+ ...++..+.+....
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~--------------- 305 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEAL--------------- 305 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhc---------------
Confidence 999999987553 34444444444333 45578999999999996553 33444444443211
Q ss_pred cceE-EEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPME-LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~-~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+. ++++||.+++|++++...+.+.+
T Consensus 306 -~~~~~~~ISa~t~~g~~~L~~~~~~~l 332 (369)
T COG0536 306 -GWEVFYLISALTREGLDELLRALAELL 332 (369)
T ss_pred -CCCcceeeehhcccCHHHHHHHHHHHH
Confidence 122 22299999999999999988765
|
|
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=112.30 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=99.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-----------hHhhh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-----------VWRDY 85 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-----------~~~~~ 85 (194)
.+|+++|.+|+||||++|.+++.+... ...|..........++..+.++||||..+... .....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 479999999999999999999876542 23466666677778899999999999654321 11222
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCHH--------HHHhhhcccCccCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFDAASED--------EVRHFFGLYGLTTGK 156 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~--------e~~~~~~~~~~~~~~ 156 (194)
..+.|++++|+++.+. + ......+..+.+... ..-.++++++|+.|.....+.+ .+...++.
T Consensus 81 ~~g~~~illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~------- 151 (196)
T cd01852 81 APGPHAFLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK------- 151 (196)
T ss_pred CCCCEEEEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH-------
Confidence 4578999999998762 1 122222333322211 1126889999999976643333 23333333
Q ss_pred ccCcccccCCcceEEEEe--ccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMC--SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~--Sa~~~~~v~~l~~~l~~~i 193 (194)
++.+...|-.. |+..+.++.+|++.+.+.+
T Consensus 152 -------c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~ 183 (196)
T cd01852 152 -------CGGRYVAFNNKAKGEEQEQQVKELLAKVESMV 183 (196)
T ss_pred -------hCCeEEEEeCCCCcchhHHHHHHHHHHHHHHH
Confidence 23332222222 3677889999999987654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >KOG4423|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-18 Score=119.13 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=124.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC---EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+++|+|..|+|||+++.++....++ .+-.|++... .....+. +++++||..||+++..+..-+++.+.+.++|
T Consensus 26 ~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~iV 105 (229)
T KOG4423|consen 26 FKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIV 105 (229)
T ss_pred hhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEEE
Confidence 48899999999999999999998887 5677777753 3344444 6789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASE---DEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
||++...+|+....|..++-... +....|+++..||||..+.... ..+.++.+ .+.+.
T Consensus 106 fdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~k----------------engf~ 169 (229)
T KOG4423|consen 106 FDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKK----------------ENGFE 169 (229)
T ss_pred EEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHh----------------ccCcc
Confidence 99999999999999999986653 3334778999999998663222 23333332 33445
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++|+|.+.+++|+.+.+++.+
T Consensus 170 gwtets~Kenkni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 170 GWTETSAKENKNIPEAQRELVEKI 193 (229)
T ss_pred ceeeeccccccChhHHHHHHHHHH
Confidence 689999999999999999998864
|
|
| >PRK12739 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-15 Score=127.40 Aligned_cols=113 Identities=19% Similarity=0.163 Sum_probs=83.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+-.+|.++|++++|||||++++....-. ....|+......+..++..+.++||||+..+
T Consensus 7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f 86 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF 86 (691)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence 3457899999999999999999753110 1122444455677888999999999999988
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
...+...++.+|++++|+|+.+... ......+..+.. .++|+++++||+|+...
T Consensus 87 ~~e~~~al~~~D~~ilVvDa~~g~~-~qt~~i~~~~~~----~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 87 TIEVERSLRVLDGAVAVFDAVSGVE-PQSETVWRQADK----YGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCC-HHHHHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 7778888999999999999987532 222333333322 46899999999998763
|
|
| >KOG0462|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=120.96 Aligned_cols=153 Identities=17% Similarity=0.172 Sum_probs=111.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------c------ccc----CCCcceeEEEeCC---EEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------Q------HMP----TLHPTSEELSMGD---IVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------~------~~~----t~~~~~~~~~~~~---~~~~~~d~~g~~~~~~~ 81 (194)
++.++.+-..|||||..++....-. + ... |+......+.+.+ +.++++|||||.+|...
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred ceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccce
Confidence 6789999999999999999864221 1 111 2222234455555 89999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
....+.-|+++++|+|++... ..+....+....+ .+..+|.|+||+|++.+ .++++...+....
T Consensus 142 VsRslaac~G~lLvVDA~qGv-qAQT~anf~lAfe----~~L~iIpVlNKIDlp~a-dpe~V~~q~~~lF---------- 205 (650)
T KOG0462|consen 142 VSRSLAACDGALLVVDASQGV-QAQTVANFYLAFE----AGLAIIPVLNKIDLPSA-DPERVENQLFELF---------- 205 (650)
T ss_pred ehehhhhcCceEEEEEcCcCc-hHHHHHHHHHHHH----cCCeEEEeeeccCCCCC-CHHHHHHHHHHHh----------
Confidence 888899999999999998854 2232322323323 57889999999999874 4555555554432
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
..+.-+++.+|||+|.|++++++++++.++
T Consensus 206 ---~~~~~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 206 ---DIPPAEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred ---cCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence 233357999999999999999999998763
|
|
| >COG3596 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=113.94 Aligned_cols=166 Identities=20% Similarity=0.235 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcc-eeEEEeCCEEEEEEEcCCCcc-------chhhHhhhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPT-SEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYF 86 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~-~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~ 86 (194)
..++++++++|..|+||||++|+++..... .+..+..++ ...-.+++..+.+||+||..+ ++.....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 458899999999999999999999965443 334344443 334456678999999999775 566677788
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC---------CCHHHHHhhhcccCccCCCc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA---------ASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~---------~~~~e~~~~~~~~~~~~~~~ 157 (194)
...|.++++++..++. .......+.+++... .+.|+++++|.+|.... .+...+++.++... .
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~---~-- 187 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKA---E-- 187 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHH---H--
Confidence 8899999999998864 444455666665432 45899999999997542 12222222222110 0
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ....-.+..+++..|...+-|++++..++++.+
T Consensus 188 -~-~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l 221 (296)
T COG3596 188 -A-LGRLFQEVKPVVAVSGRLPWGLKELVRALITAL 221 (296)
T ss_pred -H-HHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence 0 000111245788888899999999999998876
|
|
| >smart00275 G_alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=117.49 Aligned_cols=136 Identities=19% Similarity=0.315 Sum_probs=98.9
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.+...+.+++..+.+||.+|+...++.|..++.++++++||+|+++ ...+......+..+.......
T Consensus 171 T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 171 TTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred ccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 4555566778888999999999999999999999999999999999987 245777778888888888888
Q ss_pred CCcEEEEeeCCCCCCC-----------------CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 122 DVPILILGNKIDIFDA-----------------ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~-----------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
+.|+++++||.|+... .+.++..+++....... ......+.+..+.++|.+-.++..
T Consensus 251 ~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~------~~~~~~r~~y~h~t~a~Dt~~~~~ 324 (342)
T smart00275 251 NTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRL------NRNSSRKSIYHHFTCATDTRNIRV 324 (342)
T ss_pred CCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHh------ccCCCCceEEEEEeeecccHHHHH
Confidence 9999999999997541 11222222221111000 000022456677899999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+.+.+.|
T Consensus 325 v~~~v~~~I 333 (342)
T smart00275 325 VFDAVKDII 333 (342)
T ss_pred HHHHHHHHH
Confidence 998876543
|
Subunit of G proteins that contains the guanine nucleotide binding site |
| >TIGR00484 EF-G translation elongation factor EF-G | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=126.50 Aligned_cols=111 Identities=18% Similarity=0.108 Sum_probs=83.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC--c-------------------cccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA--Q-------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
-+|+++|++++|||||++++....-. . ...|+......+.+++..+.+|||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 38899999999999999999742211 0 11233444567788899999999999998887
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
.+...++.+|++++|+|+.+..... ....+..+ .. .++|+++++||+|+...
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~-~~~~~~~~-~~---~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQ-SETVWRQA-NR---YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChh-HHHHHHHH-HH---cCCCEEEEEECCCCCCC
Confidence 7888899999999999998754333 23333333 22 46899999999998763
|
After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G. |
| >cd00066 G-alpha G protein alpha subunit | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=116.32 Aligned_cols=135 Identities=20% Similarity=0.325 Sum_probs=100.0
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC----------CChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR----------SRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.....+.+++..+.+||++|+...+..|..++.+++++++|+|+++- ..+.+....+..+.......
T Consensus 148 T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 148 TTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 55666667788889999999999999999999999999999999999873 45777778888888888888
Q ss_pred CCcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 122 DVPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 122 ~~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
++|+++++||.|+.. ....++..+++..... .......+.+....++|.+..++.
T Consensus 228 ~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~-------~~~~~~~~~~~~~~t~a~Dt~~i~ 300 (317)
T cd00066 228 NTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFL-------DLNRNPNKEIYPHFTCATDTENIR 300 (317)
T ss_pred CCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHH-------HhhcCCCCeEEEEeccccchHHHH
Confidence 999999999999643 1122222222221110 000012355667789999999999
Q ss_pred HHHHHHhhhc
Q psy2159 184 NGFRWLANYI 193 (194)
Q Consensus 184 ~l~~~l~~~i 193 (194)
.+|+.+.+.|
T Consensus 301 ~vf~~v~~~i 310 (317)
T cd00066 301 FVFDAVKDII 310 (317)
T ss_pred HHHHHHHHHH
Confidence 9999887643
|
The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute. |
| >PRK00007 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=123.64 Aligned_cols=110 Identities=19% Similarity=0.132 Sum_probs=80.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC--C-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT--A-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
-+|+++|++++|||||++++....- . ....|+......+..++..+.++||||+.++..
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~~ 90 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFTI 90 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHHH
Confidence 4899999999999999999974211 0 111244444566778889999999999988776
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.....++.+|++++|+|+..... ......+..+.. .++|.++++||+|+..
T Consensus 91 ev~~al~~~D~~vlVvda~~g~~-~qt~~~~~~~~~----~~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 91 EVERSLRVLDGAVAVFDAVGGVE-PQSETVWRQADK----YKVPRIAFVNKMDRTG 141 (693)
T ss_pred HHHHHHHHcCEEEEEEECCCCcc-hhhHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 66777889999999999876432 222333444433 4689999999999876
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=115.18 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=58.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe---------------------C---CEEEEEEEcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM---------------------G---DIVFTTHDLGG 74 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~---------------------~---~~~~~~~d~~g 74 (194)
++|+++|.|++|||||+|++++.++. .++.|..++.+.+.. + ...+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 58999999999999999999988764 245566676654331 1 25689999999
Q ss_pred Cc----cchhhHhhh---hhcCCEEEEEEECC
Q psy2159 75 HV----QARRVWRDY---FPAVDAIVFIIDAS 99 (194)
Q Consensus 75 ~~----~~~~~~~~~---~~~~d~ii~v~d~~ 99 (194)
.. +...+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 53 333443344 88999999999996
|
|
| >PRK12740 elongation factor G; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.5e-14 Score=122.07 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=78.7
Q ss_pred EcCCCCChHHHHHHHHcCCCC---------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh
Q psy2159 27 LGLDNAGKTFLLQMLKNDRTA---------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 27 ~G~~~~GKStli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
+|++++|||||+++|....-. ....|++.....+.+++..+.+|||||+.++...+...
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999543211 12224444556788889999999999999887777788
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+|++++|+|++....... ...+..+.. .++|+++++||+|+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~~----~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAEK----YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 899999999999988654332 233333322 4789999999999875
|
|
| >KOG1191|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=7e-15 Score=115.32 Aligned_cols=164 Identities=16% Similarity=0.155 Sum_probs=109.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCccch-h--------hHh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHVQAR-R--------VWR 83 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~~~~-~--------~~~ 83 (194)
..+..++|+++|+|++|||||+|.+.+..-+.+.|..|.+ ...++.+|+++.+.||+|-.+.. . .-.
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 3467799999999999999999999999887666544443 56788999999999999977611 1 112
Q ss_pred hhhhcCCEEEEEEECCC--CCChHHHHHHHHHHHhC-----CCCCCCcEEEEeeCCCCCCCCCHHH--HHhhhcccCccC
Q psy2159 84 DYFPAVDAIVFIIDASD--RSRFPESKYELDNLLAD-----DALTDVPILILGNKIDIFDAASEDE--VRHFFGLYGLTT 154 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~--~~~~~~~~~~~~~~~~~-----~~~~~~piiiv~nK~D~~~~~~~~e--~~~~~~~~~~~~ 154 (194)
..+..+|++++|+|+.. -++-..+...+...-.. ......|++++.||.|+....+... ...+....
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~---- 419 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE---- 419 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccc----
Confidence 23677999999999933 22222222333332111 1123489999999999876422111 11111110
Q ss_pred CCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..........+|+++++|++.|.+++.+.+
T Consensus 420 ---------~~~~~~i~~~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 420 ---------GRSVFPIVVEVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ---------cCcccceEEEeeechhhhHHHHHHHHHHHH
Confidence 122233466699999999999999988764
|
|
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-14 Score=115.77 Aligned_cols=114 Identities=20% Similarity=0.191 Sum_probs=74.9
Q ss_pred EEEEEEEcCCCccc-----hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-
Q psy2159 65 IVFTTHDLGGHVQA-----RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA- 138 (194)
Q Consensus 65 ~~~~~~d~~g~~~~-----~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~- 138 (194)
..+.++||||.... .......+..+|+++||+|.....+..+ ..+...+... ....|+++|+||+|+.+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~-~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAV-GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhc-CCCCCEEEEEEcccCCCccc
Confidence 45888999997542 2234456889999999999987433332 2233333321 1135999999999986422
Q ss_pred -CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 139 -SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 139 -~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+.+...+.... ......+..++++||+.|.|++++++.|.+
T Consensus 307 ddkE~Lle~V~~~L----------~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTL----------MKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHH----------HhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 2455555543210 001234567999999999999999999876
|
|
| >PRK13768 GTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.3e-15 Score=109.37 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=76.4
Q ss_pred EEEEEEEcCCCccch---hhHhhhh---hc--CCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 65 IVFTTHDLGGHVQAR---RVWRDYF---PA--VDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~---~~~~~~~---~~--~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
..+.+||+||+.+.. ..+..++ .. .+++++++|+.......... .++...... ...++|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 368999999987643 3333332 22 79999999997654433332 222221111 11478999999999998
Q ss_pred CCCCHHHHHhhhcccC----ccCCC-c--cCc----ccc--cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 136 DAASEDEVRHFFGLYG----LTTGK-E--FTP----REI--LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 136 ~~~~~~e~~~~~~~~~----~~~~~-~--~~~----~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....++..+.++... ..... + ... ... ......+++++||++++|++++.++|.+.+
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l 246 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVF 246 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence 7655555555544200 00000 0 000 000 001235789999999999999999998875
|
|
| >COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=112.86 Aligned_cols=153 Identities=18% Similarity=0.192 Sum_probs=109.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--------cccc----------CCCcceeEEEe-----CCEEEEEEEcCCCccch
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--------QHMP----------TLHPTSEELSM-----GDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--------~~~~----------t~~~~~~~~~~-----~~~~~~~~d~~g~~~~~ 79 (194)
++.++.+-..|||||..++....-. +... |+..+...+.+ ..+.++++|||||.++.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred ceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccceE
Confidence 5678889999999999999875321 1222 22222223333 22789999999999988
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
......+..|.+.++|+|++..-.=+.+...+..+ + .+.-++-|+||+||+.+ +++.+++.++..
T Consensus 91 YEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~A-dpervk~eIe~~--------- 155 (603)
T COG0481 91 YEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAA-DPERVKQEIEDI--------- 155 (603)
T ss_pred EEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCC-CHHHHHHHHHHH---------
Confidence 87777788899999999999854333334444444 2 57889999999999874 344555444332
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.+...-..+.||||+|.||++++++|++.++
T Consensus 156 ----iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 156 ----IGIDASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ----hCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence 2334467899999999999999999999873
|
|
| >KOG1532|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.6e-15 Score=108.22 Aligned_cols=177 Identities=18% Similarity=0.258 Sum_probs=108.5
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----------------------------------CCCcceeE
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----------------------------------TLHPTSEE 59 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----------------------------------t~~~~~~~ 59 (194)
+.+...++.-|+++|..|||||||+++|..+-.....| ..||+-+.
T Consensus 12 a~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI 91 (366)
T KOG1532|consen 12 ASGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGI 91 (366)
T ss_pred ccccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcch
Confidence 34556678888899999999999999998652221110 12222221
Q ss_pred EE-------------------eCCEEEEEEEcCCCccchhh-------Hhhhh-hcCCEEEEEEECCC---CCChHHHHH
Q psy2159 60 LS-------------------MGDIVFTTHDLGGHVQARRV-------WRDYF-PAVDAIVFIIDASD---RSRFPESKY 109 (194)
Q Consensus 60 ~~-------------------~~~~~~~~~d~~g~~~~~~~-------~~~~~-~~~d~ii~v~d~~~---~~~~~~~~~ 109 (194)
++ -+..++-++|||||-+...+ ...+. ...-+++||+|... +.+|..-.-
T Consensus 92 ~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMl 171 (366)
T KOG1532|consen 92 VTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNML 171 (366)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHH
Confidence 11 01256889999998864321 11122 34568899999744 556766666
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC---ccCc--------ccccCCcceEEEEecccc
Q psy2159 110 ELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK---EFTP--------REILQMRPMELFMCSVLK 178 (194)
Q Consensus 110 ~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~Sa~~ 178 (194)
+.-.++.. .+.|.|++.||+|+.+..=..++..-++...+..+. .+.- ..+.--+....+.+||.+
T Consensus 172 YAcSilyk---tklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~t 248 (366)
T KOG1532|consen 172 YACSILYK---TKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVT 248 (366)
T ss_pred HHHHHHHh---ccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEeccc
Confidence 66666655 789999999999997733333333333222211110 0000 001112457789999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|.++.+.+
T Consensus 249 G~G~ddf~~av~~~v 263 (366)
T KOG1532|consen 249 GEGFDDFFTAVDESV 263 (366)
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999999987654
|
|
| >PRK14845 translation initiation factor IF-2; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.2e-14 Score=119.97 Aligned_cols=153 Identities=18% Similarity=0.236 Sum_probs=94.6
Q ss_pred CChHHHHHHHHcCCCCcccc---CCCcceeEEEeCC------------------EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 32 AGKTFLLQMLKNDRTAQHMP---TLHPTSEELSMGD------------------IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 32 ~GKStli~~~~~~~~~~~~~---t~~~~~~~~~~~~------------------~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
++||||+.++.+...+...+ |.......+..+. -.+.+|||||++.+..+....+..+|
T Consensus 472 ~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aD 551 (1049)
T PRK14845 472 VHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLAD 551 (1049)
T ss_pred cccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCC
Confidence 55999999999887653222 4333333343331 12899999999999888877788899
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHHHhhh---------
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEVRHFF--------- 147 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~~~~~--------- 147 (194)
++++|+|+++.-. ......+. .+.. .++|+++++||+|+.+... .++..+.+
T Consensus 552 ivlLVVDa~~Gi~-~qT~e~I~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~ 626 (1049)
T PRK14845 552 LAVLVVDINEGFK-PQTIEAIN-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIG 626 (1049)
T ss_pred EEEEEEECcccCC-HhHHHHHH-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhh
Confidence 9999999987311 11222222 2232 3689999999999864211 01111111
Q ss_pred --cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 148 --GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+ -....+....+. ...++++++||++|+|+++|.++|..
T Consensus 627 ~L~~~G-~~~e~~~~~~d~-~~~v~iVpVSA~tGeGId~Ll~~l~~ 670 (1049)
T PRK14845 627 KLYELG-FDADRFDRVQDF-TRTVAIVPVSAKTGEGIPELLMMVAG 670 (1049)
T ss_pred HHHhcC-cchhhhhhhhhc-CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 1111 000000011112 34578999999999999999998853
|
|
| >KOG1490|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=112.67 Aligned_cols=170 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhCCc-CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-
Q psy2159 5 WTKFREVLLRLGLW-KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR- 79 (194)
Q Consensus 5 ~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~- 79 (194)
+.-++..+.+++.. .+.-.++++|-|++|||||+|.+...... ..++|.+...+.+.+.-..+++.||||.-+..
T Consensus 151 LeqVrqhl~rlPsIDp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~pl 230 (620)
T KOG1490|consen 151 LEQVRQHLSRLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPE 230 (620)
T ss_pred HHHHHHHHhcCCCCCCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcch
Confidence 34456677777744 45556667799999999999999987754 46667777888888888899999999954321
Q ss_pred --------hhHhhhhhcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH----HHHHh
Q psy2159 80 --------RVWRDYFPAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE----DEVRH 145 (194)
Q Consensus 80 --------~~~~~~~~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~----~e~~~ 145 (194)
..+....+--.+|+|+.|++... |.......++++. .-+.++|+|+|+||+|+....+. +++.+
T Consensus 231 EdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIK--pLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~ 308 (620)
T KOG1490|consen 231 EDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIK--PLFANKVTILVLNKIDAMRPEDLDQKNQELLQ 308 (620)
T ss_pred hhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhH--HHhcCCceEEEeecccccCccccCHHHHHHHH
Confidence 11222344557899999998744 4556566777763 44578999999999998662222 23333
Q ss_pred hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 146 FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+. ....++++.+|..+.+||.++....++.
T Consensus 309 ~~~----------------~~~~v~v~~tS~~~eegVm~Vrt~ACe~ 339 (620)
T KOG1490|consen 309 TII----------------DDGNVKVVQTSCVQEEGVMDVRTTACEA 339 (620)
T ss_pred HHH----------------hccCceEEEecccchhceeeHHHHHHHH
Confidence 332 2233789999999999999887776654
|
|
| >PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-14 Score=107.28 Aligned_cols=125 Identities=13% Similarity=0.002 Sum_probs=60.1
Q ss_pred EEEEEEcCCCccchhhHhhhh--------hcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+.++|||||.+....+.... ...-++++++|.....+-.... ..+..... ....+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~-~~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSI-MLRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHH-HHHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHH-HhhCCCCEEEeeeccCccc
Confidence 699999999998765444322 3456889999987654422221 22222211 1115789999999999976
Q ss_pred CCCHHHHHhhhcccCcc--------CCCcc---CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 AASEDEVRHFFGLYGLT--------TGKEF---TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 ~~~~~e~~~~~~~~~~~--------~~~~~---~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. .+...+++...... ..... ....+. .....++++|+++++|+.+++..+.+.+
T Consensus 171 ~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~-~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDF-GLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCC-SSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred ch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhc-CCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 22 22222221100000 00000 000111 1123799999999999999999987653
|
; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A. |
| >COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=107.54 Aligned_cols=156 Identities=20% Similarity=0.273 Sum_probs=115.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------ccc------CCCcce----eEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------HMP------TLHPTS----EELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------~~~------t~~~~~----~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
+|.++.+-..|||||+..++..+-. . ... ..|.++ .-+.+++.+++++|||||.++.....
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 7899999999999999999976432 1 111 122222 24677889999999999999999999
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh---cccCccCCCccCc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF---GLYGLTTGKEFTP 160 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~---~~~~~~~~~~~~~ 160 (194)
..++-+|++++++|+.+.. +.+.+..+...+. .+.+.|+|+||+|.+..-+.+-+.+.+ -...+.+.
T Consensus 87 Rvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de----- 156 (603)
T COG1217 87 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE----- 156 (603)
T ss_pred hhhhhcceEEEEEEcccCC-CCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh-----
Confidence 9999999999999998753 7788877777776 477889999999998754443333333 33332222
Q ss_pred ccccCCcceEEEEeccccC----------CChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKR----------QGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~i 193 (194)
....+++..|++.| .++..||+.|++.+
T Consensus 157 -----QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv 194 (603)
T COG1217 157 -----QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV 194 (603)
T ss_pred -----hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence 23367888888765 37999999998865
|
|
| >cd01850 CDC_Septin CDC/Septin | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-14 Score=105.97 Aligned_cols=110 Identities=18% Similarity=0.218 Sum_probs=70.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCcc-----------ccCCCcce--eEEEeCC--EEEEEEEcCCCccchh---h-
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----------MPTLHPTS--EELSMGD--IVFTTHDLGGHVQARR---V- 81 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~-----------~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~---~- 81 (194)
.++|+++|++|+|||||+|++++..+... .+|..... ..+..++ .++.+|||||...... .
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~ 83 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW 83 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence 46899999999999999999999876532 22332222 2344455 5799999999543210 0
Q ss_pred ----------------------Hhhhhh--cCCEEEEEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 82 ----------------------WRDYFP--AVDAIVFIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 82 ----------------------~~~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+...+. .+|+++|+++.+.. ..... ...+..+. ...|+++|+||+|+..
T Consensus 84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D~l~ 157 (276)
T cd01850 84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCCcCC
Confidence 101222 46788888887652 23333 33344432 2589999999999865
|
Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities. |
| >cd01882 BMS1 Bms1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=100.57 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=87.6
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+...++..|+++|++|+|||||++.+.+.... ......|. .......+..+.++|+||.. ... ....+.+|++++
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVll 109 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLL 109 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH--HHH-HHHHHhcCEEEE
Confidence 34567778889999999999999999875222 11111221 22233466889999999864 222 334678999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCCCC-CHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFDAA-SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|.+.... .....+...+.. .+.|. ++++||.|+.+.. ..+++.+.+.... .. ......+++
T Consensus 110 viDa~~~~~--~~~~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~---------~~-~~~~~~ki~ 174 (225)
T cd01882 110 LIDASFGFE--METFEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRF---------WT-EVYQGAKLF 174 (225)
T ss_pred EEecCcCCC--HHHHHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHH---------HH-hhCCCCcEE
Confidence 999876432 222333333332 35675 5599999987422 1233333332211 00 011336799
Q ss_pred EeccccCC
Q psy2159 173 MCSVLKRQ 180 (194)
Q Consensus 173 ~~Sa~~~~ 180 (194)
++||++.-
T Consensus 175 ~iSa~~~~ 182 (225)
T cd01882 175 YLSGIVHG 182 (225)
T ss_pred EEeeccCC
Confidence 99998764
|
Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes. |
| >COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.9e-14 Score=104.05 Aligned_cols=159 Identities=18% Similarity=0.177 Sum_probs=113.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc------CCCcc--------------------eeEEEeCC------EE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP------TLHPT--------------------SEELSMGD------IV 66 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~------t~~~~--------------------~~~~~~~~------~~ 66 (194)
++..+|..+|+-..||||+.+++.+-....... |+... .......+ +.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 688999999999999999999999864432111 11000 01111111 67
Q ss_pred EEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHH
Q psy2159 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDE 142 (194)
Q Consensus 67 ~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e 142 (194)
+.++|.|||+-.-+....-..-.|++++|++.+++..-.+.++.+..+--. .-+.++++-||+|+... ...++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIi---gik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEII---GIKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhh---ccceEEEEecccceecHHHHHHHHHH
Confidence 999999999977665555555679999999999988777777766655322 34678999999999762 23344
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++++++- .-..+.+++++||..+.|++-++++|.+.|+
T Consensus 165 Ik~FvkG--------------t~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKG--------------TVAENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhcc--------------cccCCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 4444432 2244578999999999999999999998773
|
|
| >KOG0082|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=104.27 Aligned_cols=142 Identities=20% Similarity=0.312 Sum_probs=101.2
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|.|.....+.+.+.++.++|.+||...+.-|.+++.+++++++|+++++ -..+.+....+..+.....+.
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~ 261 (354)
T KOG0082|consen 182 TTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFA 261 (354)
T ss_pred cCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccc
Confidence 6677777889999999999999999999999999999999999999876 223555567888888899999
Q ss_pred CCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCc-------cCcccccCC--cceEEEEeccccCCChHHHHHHHhh
Q psy2159 122 DVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKE-------FTPREILQM--RPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+.++|+.+||.|+.. .....-+...+..+...+... .++.+.... +.+-...+.|.+-.+|+.+|+...+
T Consensus 262 ~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d 341 (354)
T KOG0082|consen 262 NTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTD 341 (354)
T ss_pred cCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHH
Confidence 999999999999865 122222333333332111100 001111111 3455666799999999999998876
Q ss_pred hc
Q psy2159 192 YI 193 (194)
Q Consensus 192 ~i 193 (194)
.|
T Consensus 342 ~I 343 (354)
T KOG0082|consen 342 TI 343 (354)
T ss_pred HH
Confidence 54
|
|
| >COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-13 Score=104.35 Aligned_cols=151 Identities=19% Similarity=0.144 Sum_probs=102.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc------------------------------------cccCCCcceeEEEe
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------------------------------------HMPTLHPTSEELSM 62 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~------------------------------------~~~t~~~~~~~~~~ 62 (194)
+..++++..|.-.-||||||-+|+.+.-.- ..-|++..+..+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 456799999999999999999999864221 00133333445556
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASE 140 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~ 140 (194)
..+++.+-|||||++|.+-+..-.+-||+.|+++|+... .-....+...+... ..-..+++.+||+||.+ ....
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sL--LGIrhvvvAVNKmDLvdy~e~~F 159 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASL--LGIRHVVVAVNKMDLVDYSEEVF 159 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHH--hCCcEEEEEEeeecccccCHHHH
Confidence 779999999999999998777778889999999998652 22222222222221 13467899999999977 2333
Q ss_pred HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 141 DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 141 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
+++...+.. ++...+.....++|+||..|+||-
T Consensus 160 ~~I~~dy~~----------fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 160 EAIVADYLA----------FAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHH----------HHHHcCCCcceEEechhccCCccc
Confidence 444443321 122344555789999999999874
|
|
| >COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-14 Score=90.41 Aligned_cols=138 Identities=21% Similarity=0.284 Sum_probs=94.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhH----hhhhhcCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW----RDYFPAVDAIVFIID 97 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~----~~~~~~~d~ii~v~d 97 (194)
.|++++|..|+|||||.+.+-+...-. -.| .-++++.. -.+||||.-..+..| .-...++|++++|-.
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-kKT-----QAve~~d~--~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~ 73 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-KKT-----QAVEFNDK--GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHA 73 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-ccc-----ceeeccCc--cccCCchhhhhhhHHHHHHHHHhhccceeeeeec
Confidence 479999999999999999998763321 111 12223221 246999965333322 333578999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
.+++++.-.- .+..+ ..+|+|-+++|.|+.++.+.+-.+.++...+ .-++|.+|+.
T Consensus 74 and~~s~f~p--~f~~~------~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG----------------a~~IF~~s~~ 129 (148)
T COG4917 74 ANDPESRFPP--GFLDI------GVKKVIGVVTKADLAEDADISLVKRWLREAG----------------AEPIFETSAV 129 (148)
T ss_pred ccCccccCCc--ccccc------cccceEEEEecccccchHhHHHHHHHHHHcC----------------CcceEEEecc
Confidence 9886542111 11111 3467999999999998777777777775422 3579999999
Q ss_pred cCCChHHHHHHHhh
Q psy2159 178 KRQGFGNGFRWLAN 191 (194)
Q Consensus 178 ~~~~v~~l~~~l~~ 191 (194)
++.|++++++.|..
T Consensus 130 d~~gv~~l~~~L~~ 143 (148)
T COG4917 130 DNQGVEELVDYLAS 143 (148)
T ss_pred CcccHHHHHHHHHh
Confidence 99999999998864
|
|
| >TIGR00490 aEF-2 translation elongation factor aEF-2 | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.3e-13 Score=113.75 Aligned_cols=124 Identities=19% Similarity=0.159 Sum_probs=84.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC---------------CCCc----cccCCCcceeE----EEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND---------------RTAQ----HMPTLHPTSEE----LSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~---------------~~~~----~~~t~~~~~~~----~~~~~~~~~~~d~~g~ 75 (194)
.+--+|+++|+.++|||||++++... .+.. ...|+...... ++.++..+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 34569999999999999999999752 1111 22233332222 3445689999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhh
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFF 147 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~ 147 (194)
.++.......++.+|++++|+|+....... ....+..... .+.|.++++||+|... ....+++...+
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~-t~~~~~~~~~----~~~p~ivviNKiD~~~~~~~~~~~~~~~~~ 166 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQ-TETVLRQALK----ENVKPVLFINKVDRLINELKLTPQELQERF 166 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCcc-HHHHHHHHHH----cCCCEEEEEEChhcccchhcCCHHHHHHHH
Confidence 998887788899999999999987743222 2233333322 4678899999999864 33444555444
|
This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD. |
| >PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-13 Score=99.38 Aligned_cols=116 Identities=17% Similarity=0.104 Sum_probs=72.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcc-----ccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhH----hhh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQH-----MPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVW----RDY 85 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~----~~~ 85 (194)
++|+++|..||||||++|.+++...... ..|..........++..+.++||||..+.. ... ...
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 4899999999999999999998876432 235555666778899999999999954321 111 122
Q ss_pred hhcCCEEEEEEECCCCCChHHHHH-HHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCH
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKY-ELDNLLADDA-LTDVPILILGNKIDIFDAASE 140 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~ 140 (194)
..+.+++++|+.... |..... .+..+.+... ..-..++|+.|..|.......
T Consensus 81 ~~g~ha~llVi~~~r---~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~ 134 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGR---FTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSL 134 (212)
T ss_dssp TT-ESEEEEEEETTB----SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTH
T ss_pred cCCCeEEEEEEecCc---chHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccH
Confidence 456899999999873 433332 2222222110 012568999999997765543
|
The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C .... |
| >TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.4e-12 Score=97.56 Aligned_cols=132 Identities=11% Similarity=0.095 Sum_probs=81.0
Q ss_pred HHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhhH---
Q psy2159 11 VLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRVW--- 82 (194)
Q Consensus 11 ~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--- 82 (194)
.+..+. ...+.++|+++|.+|+||||++|++++.....+.+ +..+.......++..+.++||||..+.....
T Consensus 27 ~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~ 106 (313)
T TIGR00991 27 LLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQA 106 (313)
T ss_pred HHHhcccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHH
Confidence 444444 33578899999999999999999999876542222 2222233445678999999999977543211
Q ss_pred hhhh------hcCCEEEEEEECCCCCChHHH-HHHHHHHHhCC-CCCCCcEEEEeeCCCCCC--CCCHHHH
Q psy2159 83 RDYF------PAVDAIVFIIDASDRSRFPES-KYELDNLLADD-ALTDVPILILGNKIDIFD--AASEDEV 143 (194)
Q Consensus 83 ~~~~------~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piiiv~nK~D~~~--~~~~~e~ 143 (194)
...+ ...|+++||..++... +... ...+..+.... ..--.++|+++|+.|..+ ..+.++.
T Consensus 107 ~~~ik~~l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~f 176 (313)
T TIGR00991 107 VNIIKRFLLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDF 176 (313)
T ss_pred HHHHHHHhhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHH
Confidence 1111 2589999996655432 3333 23333332221 112257899999999653 4455443
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-12 Score=102.86 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA 78 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~ 78 (194)
...++|+++|.|+||||||+|++++.... .++.|..++.+.+..++ ..+.++|+||....
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~g 98 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKG 98 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcC
Confidence 56679999999999999999999887653 36667888888777653 34899999996532
Q ss_pred h----h---hHhhhhhcCCEEEEEEECC
Q psy2159 79 R----R---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 79 ~----~---~~~~~~~~~d~ii~v~d~~ 99 (194)
. . .....++.+|++++|+|..
T Consensus 99 a~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 99 ASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1 1 2333467899999999984
|
|
| >cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts) | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=97.13 Aligned_cols=119 Identities=13% Similarity=0.078 Sum_probs=76.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccch--h-h-------H
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQAR--R-V-------W 82 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--~-~-------~ 82 (194)
....+++|+++|.+|+|||||+|++++....... .|..........++..+.++||||..+.. . . .
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4468899999999999999999999998654322 23333444555678899999999977542 1 1 1
Q ss_pred hhhhh--cCCEEEEEEECCCCCChHHH-HHHHHHHHhCCC-CCCCcEEEEeeCCCCCC
Q psy2159 83 RDYFP--AVDAIVFIIDASDRSRFPES-KYELDNLLADDA-LTDVPILILGNKIDIFD 136 (194)
Q Consensus 83 ~~~~~--~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 136 (194)
..++. ..|++++|..++... +... ...+..+..... .--.++++|.||+|...
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~ 163 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSP 163 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence 12232 578888887665432 2222 233333332211 11257999999999754
|
This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon. |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-12 Score=99.09 Aligned_cols=113 Identities=13% Similarity=0.047 Sum_probs=66.9
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+..+.++||+|....... ....+|.+++|.+........... ...++. .-++|+||.|+......+.
T Consensus 147 ~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E~------aDIiVVNKaDl~~~~~a~~ 214 (332)
T PRK09435 147 AGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIK---KGIMEL------ADLIVINKADGDNKTAARR 214 (332)
T ss_pred cCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHH---hhhhhh------hheEEeehhcccchhHHHH
Confidence 3577899999998743322 456799999997644433333322 222222 2389999999876433333
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+....... ......-..+++.+||+++.|++++++.|.+.+
T Consensus 215 ~~~el~~~L~l~------~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~ 259 (332)
T PRK09435 215 AAAEYRSALRLL------RPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHR 259 (332)
T ss_pred HHHHHHHHHhcc------cccccCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 333332211000 000001113699999999999999999998753
|
|
| >PRK07560 elongation factor EF-2; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.2e-12 Score=107.01 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=77.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--c----------c-------ccCCCcceeEEEe----CCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q----------H-------MPTLHPTSEELSM----GDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~----------~-------~~t~~~~~~~~~~----~~~~~~~~d~~g~ 75 (194)
.+--+|+++|+.++|||||+.+++...-. . + .-|+......+.+ .+..+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 44457999999999999999999753211 0 0 0122222222222 3578999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.++.......++.+|++++|+|+.... .......|..... .+.|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~-~~~t~~~~~~~~~----~~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGV-MPQTETVLRQALR----ERVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCC-CccHHHHHHHHHH----cCCCeEEEEECchhhc
Confidence 998887888899999999999987743 2233344444333 3567899999999763
|
|
| >KOG0458|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-13 Score=107.16 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=100.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC----------------------CCC--cccc----------CCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND----------------------RTA--QHMP----------TLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~----------------------~~~--~~~~----------t~~~~~~~~~~~~ 64 (194)
+.++.++++|+-.+|||||+.++... .|. .... |.......++-+.
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 47789999999999999999998864 010 0000 1111223445556
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChHHHH--HHHHHHHhCCCCCCCcEEEEeeCCCCCC--C
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFPESK--YELDNLLADDALTDVPILILGNKIDIFD--A 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~--~ 137 (194)
..+++.|.||+..|-.-...-...+|+.++|+|++..+ +|+... .....++. ...-..+||++||+|+.. .
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr--~Lgi~qlivaiNKmD~V~Wsq 332 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLR--SLGISQLIVAINKMDLVSWSQ 332 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHH--HcCcceEEEEeecccccCccH
Confidence 88999999998887776666678899999999997632 233111 11111111 123567899999999977 3
Q ss_pred CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
...++++..+.... ...++ .....+.|+|||+.+|+|+...
T Consensus 333 ~RF~eIk~~l~~fL-~~~~g------f~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 333 DRFEEIKNKLSSFL-KESCG------FKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred HHHHHHHHHHHHHH-HHhcC------cccCCcceEecccccCCccccc
Confidence 44455555443211 00000 4445578999999999987543
|
|
| >TIGR00101 ureG urease accessory protein UreG | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-12 Score=91.08 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=63.0
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDE 142 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e 142 (194)
....++++.|..-.....+ .-+|.++.|+|+.+..+... ....++ ...=++++||+|+.+. ...+.
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~ 159 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGV 159 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHH
Confidence 3455667777321111111 12578999999987443211 101111 1223899999999752 34555
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+.... ...+++++||++|+|++++|+++.+++
T Consensus 160 ~~~~~~~~~---------------~~~~i~~~Sa~~g~gi~el~~~i~~~~ 195 (199)
T TIGR00101 160 MERDAKKMR---------------GEKPFIFTNLKTKEGLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHHHhC---------------CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 555554322 347799999999999999999998764
|
This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. |
| >TIGR00750 lao LAO/AO transport system ATPase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-11 Score=94.21 Aligned_cols=163 Identities=16% Similarity=0.116 Sum_probs=93.6
Q ss_pred HHHHHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCC------C-----Ccccc-C---------------CCcc--e
Q psy2159 8 FREVLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDR------T-----AQHMP-T---------------LHPT--S 57 (194)
Q Consensus 8 ~~~~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~------~-----~~~~~-t---------------~~~~--~ 57 (194)
.+..+..+.... +...+.++|++|+|||||++.+...- . ....+ + ..+. .
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFI 99 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCcee
Confidence 445667776444 45566688999999999999877520 0 00000 0 0000 0
Q ss_pred eE--------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhC
Q psy2159 58 EE--------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD 117 (194)
Q Consensus 58 ~~--------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~ 117 (194)
.. .+..+..+.+.||+|..... ......+|.++++.+.. +..++......+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l--- 170 (300)
T TIGR00750 100 RSMPTRGHLGGLSQATRELILLLDAAGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL--- 170 (300)
T ss_pred eecCccccccchhHHHHHHHHHHHhCCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH---
Confidence 00 11235678999999864211 23466678888875432 334444333333
Q ss_pred CCCCCCcEEEEeeCCCCCCCCCHHHHHhhh----cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 118 DALTDVPILILGNKIDIFDAASEDEVRHFF----GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 118 ~~~~~~piiiv~nK~D~~~~~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.++|.++++||+|+............+ .... ........+++++||+++.|++++++++.+.
T Consensus 171 ---~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~----------~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~ 236 (300)
T TIGR00750 171 ---MEIADIYVVNKADGEGATNVTIARLMLALALEEIR----------RREDGWRPPVLTTSAVEGRGIDELWDAIEEH 236 (300)
T ss_pred ---hhhccEEEEEcccccchhHHHHHHHHHHHHHhhcc----------ccccCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence 356789999999987643322212111 1111 0000111358999999999999999999874
|
Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however. |
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-12 Score=96.43 Aligned_cols=96 Identities=20% Similarity=0.198 Sum_probs=72.9
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLT 153 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~ 153 (194)
+++..+.+.++.++|++++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.... ++..+.+..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~---- 95 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYRN---- 95 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHHH----
Confidence 566777778899999999999999877 78888887765532 57999999999999653222 122233322
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....++++||++|.|++++|+.+.+.
T Consensus 96 -------------~g~~v~~~SAktg~gi~eLf~~l~~~ 121 (245)
T TIGR00157 96 -------------IGYQVLMTSSKNQDGLKELIEALQNR 121 (245)
T ss_pred -------------CCCeEEEEecCCchhHHHHHhhhcCC
Confidence 22679999999999999999988653
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=94.60 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=60.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc---
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA--- 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~--- 78 (194)
++++++|.|+||||||+|++++.... .+++|..++.+.+..++ ..+.+.|+||....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 68999999999999999999998742 36678888877777654 25899999996532
Q ss_pred -hh---hHhhhhhcCCEEEEEEECC
Q psy2159 79 -RR---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 79 -~~---~~~~~~~~~d~ii~v~d~~ 99 (194)
.. .....++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 12 2333467899999999984
|
|
| >PLN00116 translation elongation factor EF-2 subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.7e-12 Score=108.12 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=80.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEe----------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSM---------------- 62 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~---------------- 62 (194)
..+--+|+++|+.++|||||+++++...-. . ...|+......+.+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345558999999999999999999864321 0 11122222222333
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
++..++++||||+.++.......++.+|++++|+|+.+.-.. .....|..... .++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~-~t~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCV-QTETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcc-cHHHHHHHHHH----CCCCEEEEEECCccc
Confidence 257889999999999988888888999999999998875322 23344555443 578999999999987
|
|
| >PTZ00416 elongation factor 2; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=107.79 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=78.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c-----------------cccCCCcceeEEEeC----------CEEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q-----------------HMPTLHPTSEELSMG----------DIVFTTH 70 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~-----------------~~~t~~~~~~~~~~~----------~~~~~~~ 70 (194)
+--+|+++|+.++|||||++++....-. . ...|+......+.+. +..+.++
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 3448999999999999999999864211 0 001122212223333 5679999
Q ss_pred EcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 71 d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
||||+.++.......++.+|++++|+|+.+.-. ......|..+.. .++|+++++||+|+.
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~-~~t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC-VQTETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC-ccHHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 999999888777888899999999999887432 233344555443 468999999999986
|
|
| >COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-12 Score=96.96 Aligned_cols=154 Identities=18% Similarity=0.077 Sum_probs=111.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
-|+..|+-..|||||++.+.+.... ....|++..+.....++....++|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 3567799999999999999987654 2455677777777888889999999999988776677788999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|.++.- -.+..+.+.-+ .. ......++|+||+|+.++...++..+.+.... .....+++.+|+
T Consensus 82 ~~deGl-~~qtgEhL~iL-dl--lgi~~giivltk~D~~d~~r~e~~i~~Il~~l-------------~l~~~~i~~~s~ 144 (447)
T COG3276 82 AADEGL-MAQTGEHLLIL-DL--LGIKNGIIVLTKADRVDEARIEQKIKQILADL-------------SLANAKIFKTSA 144 (447)
T ss_pred eCccCc-chhhHHHHHHH-Hh--cCCCceEEEEeccccccHHHHHHHHHHHHhhc-------------cccccccccccc
Confidence 997632 12222222222 22 13345699999999987544444444432221 134467899999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+||++|.+.|.+..
T Consensus 145 ~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 145 KTGRGIEELKNELIDLL 161 (447)
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999999998754
|
|
| >KOG1144|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=5e-12 Score=103.65 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=105.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc--ccc---CCCccee------------------EEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMP---TLHPTSE------------------ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~---t~~~~~~------------------~~~~~~~~~~~~d~~g~ 75 (194)
.++.-|+++|+-.+|||-|+..+.+..... ... -+|.++- .+..+ .+.++||||+
T Consensus 473 lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvP--g~lvIdtpgh 550 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVP--GLLVIDTPGH 550 (1064)
T ss_pred cCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCC--eeEEecCCCc
Confidence 466778899999999999999998754431 000 1111111 01111 3788899999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC------CCCH---------
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD------AASE--------- 140 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~------~~~~--------- 140 (194)
+.|..++....+.||.+|+|+|+.+.-. ......+..+.. .+.|+||.+||+|..- ..+.
T Consensus 551 EsFtnlRsrgsslC~~aIlvvdImhGle-pqtiESi~lLR~----rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 551 ESFTNLRSRGSSLCDLAILVVDIMHGLE-PQTIESINLLRM----RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhhhhccccccceEEEEeehhccCC-cchhHHHHHHHh----cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 9999999999999999999999977321 122233333332 6899999999999642 1111
Q ss_pred ---HHHHhhhccc------CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 141 ---DEVRHFFGLY------GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 141 ---~e~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+++...++.. +..+...+. ......+.+.++|+||.+|+||.+|+-+|+++
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~Lyy-kNk~~~~~vsiVPTSA~sGeGipdLl~llv~l 685 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYY-KNKEMGETVSIVPTSAISGEGIPDLLLLLVQL 685 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhhee-ecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence 1122221111 112222221 11123345679999999999999999999875
|
|
| >PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.4e-13 Score=96.90 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=91.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC------CCC--ccccCCCc-------------------ce--eEE--------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND------RTA--QHMPTLHP-------------------TS--EEL-------- 60 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~------~~~--~~~~t~~~-------------------~~--~~~-------- 60 (194)
..+...|.+.|+||+|||||++.|... +.. ...|+... .. -.+
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 447788999999999999999988753 111 12221111 10 000
Q ss_pred ------------EeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2159 61 ------------SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128 (194)
Q Consensus 61 ------------~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 128 (194)
+--|+.+.++.|.|..+..- ....-+|.+++|.-+...+..+..+.-+.++.. ++|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaD---------i~v 173 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEIAD---------IFV 173 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-S---------EEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhhcc---------EEE
Confidence 11246677888876443222 234569999999998877777777776777632 999
Q ss_pred eeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 129 GNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 129 ~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+||+|++. +....+++..+..... ....-..+++.+||.++.|+++++++|.+.
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~----------~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~ 228 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLRE----------REDGWRPPVLKTSALEGEGIDELWEAIDEH 228 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCST----------SCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccc----------cccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 99999654 2333445554443220 001112589999999999999999998763
|
In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A. |
| >PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=95.72 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-----cc---ccCCCcceeEEEeCC-EEEEEEEcCCCc
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-----QH---MPTLHPTSEELSMGD-IVFTTHDLGGHV 76 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-----~~---~~t~~~~~~~~~~~~-~~~~~~d~~g~~ 76 (194)
+.++..++.++ ..+++|+|+|.+|+|||||||.+.+-.-. .+ ..|..++ .+..+. -++.+||.||..
T Consensus 22 s~i~~~l~~~~--~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~--~Y~~p~~pnv~lWDlPG~g 97 (376)
T PF05049_consen 22 SKIREALKDID--NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPT--PYPHPKFPNVTLWDLPGIG 97 (376)
T ss_dssp HHHHHHHHHHH--H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-E--EEE-SS-TTEEEEEE--GG
T ss_pred HHHHHHHHHhh--cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCe--eCCCCCCCCCeEEeCCCCC
Confidence 45566666654 56789999999999999999999864322 11 1122222 222233 269999999965
Q ss_pred cchhhH-----hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC---------CCCCCH--
Q psy2159 77 QARRVW-----RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI---------FDAASE-- 140 (194)
Q Consensus 77 ~~~~~~-----~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~---------~~~~~~-- 140 (194)
...-.. ..-+...|.+|++.+- .|.....++...+.. .++|+++|-||+|. +.....
T Consensus 98 t~~f~~~~Yl~~~~~~~yD~fiii~s~----rf~~ndv~La~~i~~---~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~ 170 (376)
T PF05049_consen 98 TPNFPPEEYLKEVKFYRYDFFIIISSE----RFTENDVQLAKEIQR---MGKKFYFVRTKVDSDLYNERRRKPRTFNEEK 170 (376)
T ss_dssp GSS--HHHHHHHTTGGG-SEEEEEESS----S--HHHHHHHHHHHH---TT-EEEEEE--HHHHHHHHHCC-STT--HHT
T ss_pred CCCCCHHHHHHHccccccCEEEEEeCC----CCchhhHHHHHHHHH---cCCcEEEEEecccccHhhhhccCCcccCHHH
Confidence 322111 2224567988876542 366666555555554 58899999999995 112222
Q ss_pred --HHHHhhhcccCccCCCccCcccccCCcceEEEEecccc--CCChHHHHHHHhhhc
Q psy2159 141 --DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK--RQGFGNGFRWLANYI 193 (194)
Q Consensus 141 --~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~l~~~l~~~i 193 (194)
+++++.+.... ...+....++|-+|..+ ..++..|.+.|.+.+
T Consensus 171 ~L~~IR~~c~~~L----------~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dL 217 (376)
T PF05049_consen 171 LLQEIRENCLENL----------QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDL 217 (376)
T ss_dssp HHHHHHHHHHHHH----------HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHH----------HHcCCCcCceEEEeCCCcccCChHHHHHHHHHHh
Confidence 22232222111 01233445688888865 456888888887655
|
IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A. |
| >COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.2e-11 Score=92.13 Aligned_cols=163 Identities=17% Similarity=0.116 Sum_probs=99.4
Q ss_pred HHHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCC------CC--ccccCCCccee-----------------E----
Q psy2159 10 EVLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDR------TA--QHMPTLHPTSE-----------------E---- 59 (194)
Q Consensus 10 ~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~------~~--~~~~t~~~~~~-----------------~---- 59 (194)
..+..+- ..-+...|.+.|.||+|||||+..|...- .. ...|+...+-+ .
T Consensus 39 ~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs 118 (323)
T COG1703 39 ELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRS 118 (323)
T ss_pred HHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEee
Confidence 3444443 45577899999999999999999887531 11 11121111100 0
Q ss_pred --------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC
Q psy2159 60 --------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119 (194)
Q Consensus 60 --------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 119 (194)
++=-|+.+.++.|.|..+... ....-+|.+++|.-+.-.+..+.++.-+.++..
T Consensus 119 ~~srG~lGGlS~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaD--- 192 (323)
T COG1703 119 SPSRGTLGGLSRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIAD--- 192 (323)
T ss_pred cCCCccchhhhHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhhh---
Confidence 011235678888877554332 234468999998876666666666665655532
Q ss_pred CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 120 LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 120 ~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++|+||.|... +....++...+.... .......-..+++.+||.+|+|++++++.+.+.
T Consensus 193 ------i~vINKaD~~~A~~a~r~l~~al~~~~--------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h 252 (323)
T COG1703 193 ------IIVINKADRKGAEKAARELRSALDLLR--------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDH 252 (323)
T ss_pred ------eeeEeccChhhHHHHHHHHHHHHHhhc--------ccccccCCCCceeEeeeccCCCHHHHHHHHHHH
Confidence 89999999654 233444444444321 000011123579999999999999999998764
|
|
| >COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=90.11 Aligned_cols=162 Identities=21% Similarity=0.280 Sum_probs=107.7
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC----------CC--cccc-------CCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR----------TA--QHMP-------TLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~----------~~--~~~~-------t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
....+++.+|..+|+-..|||||...+...- +. ...| |+...-..++..++.+..+|+||+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence 4567899999999999999999998776421 11 1111 333333445556789999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCC-----CHHHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAA-----SEDEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~-----~~~e~~~~~~~ 149 (194)
.+|-.-.....-+.|+.|+|+.+++.. ..+.++.+.-..+ -+.| +++++||+|+.++. -..|+++.+..
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGp-mPqTrEHiLlarq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCC-CCcchhhhhhhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 988764444455689999999988853 4555543333322 3554 56777999998732 23456667766
Q ss_pred cCccCCCccCcccccCCcceEEEEecccc-CC-------ChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLK-RQ-------GFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~-------~v~~l~~~l~~~i 193 (194)
+. ......+++.-||.. .+ .+.+|++++.+++
T Consensus 161 y~------------f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 161 YG------------FPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred cC------------CCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 65 555567788888743 22 3677777776655
|
|
| >PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) [] | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-12 Score=98.87 Aligned_cols=135 Identities=21% Similarity=0.363 Sum_probs=94.4
Q ss_pred CCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 53 LHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 53 ~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
.|.....+.+ ++..+.++|.+|+...+.-|..++.++++++||+++++ ...+.+....+..+.......
T Consensus 223 ~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~ 302 (389)
T PF00503_consen 223 TGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFK 302 (389)
T ss_dssp SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGT
T ss_pred CCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccc
Confidence 3444456777 88999999999999999999999999999999999864 223566677888888887788
Q ss_pred CCcEEEEeeCCCCCC-----C---------------CCHHHHHhhhcccCccCCCccCcccccCC-cceEEEEeccccCC
Q psy2159 122 DVPILILGNKIDIFD-----A---------------ASEDEVRHFFGLYGLTTGKEFTPREILQM-RPMELFMCSVLKRQ 180 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-----~---------------~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 180 (194)
+.|++|++||.|+.. . ...++..+++..... ........ +.+.+..++|.+..
T Consensus 303 ~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~------~~~~~~~~~~~~~~h~t~a~d~~ 376 (389)
T PF00503_consen 303 NTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFL------RLNRNNSPSRRIYVHFTCATDTE 376 (389)
T ss_dssp TSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHH------CTHSTTTTCS-EEEEEESTTSHH
T ss_pred cCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHH------HhccCCCCCcceEEEEeeecccH
Confidence 999999999999643 0 122222222221110 00000111 55677899999999
Q ss_pred ChHHHHHHHhhhc
Q psy2159 181 GFGNGFRWLANYI 193 (194)
Q Consensus 181 ~v~~l~~~l~~~i 193 (194)
++..+|+.+.+.|
T Consensus 377 ~~~~v~~~v~~~i 389 (389)
T PF00503_consen 377 NIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcC
Confidence 9999999987753
|
G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B .... |
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-11 Score=90.61 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=58.4
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCE-----------------EEEEEEcCCCccc----h
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDI-----------------VFTTHDLGGHVQA----R 79 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~-----------------~~~~~d~~g~~~~----~ 79 (194)
++++|.|+||||||+|++++.+.. .++.|+.++.+.+...+. .+.++|+||.... .
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 478999999999999999998763 367788888877777653 4999999996532 1
Q ss_pred h---hHhhhhhcCCEEEEEEECC
Q psy2159 80 R---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 80 ~---~~~~~~~~~d~ii~v~d~~ 99 (194)
. .....++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 2 2233467899999999874
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >TIGR00073 hypB hydrogenase accessory protein HypB | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=89.40 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=42.2
Q ss_pred CCcEEEEeeCCCCCCCC--CHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 122 DVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..|.++++||+|+.... ...++.+.++.. .+..+++++||++|.|++++++++.+..
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~---------------~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKI---------------NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHh---------------CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 46789999999997532 234455544331 1346799999999999999999998764
|
HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases. |
| >COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription] | Back alignment and domain information |
|---|
Probab=99.28 E-value=4.7e-11 Score=83.90 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=55.5
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHh-CCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLA-DDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.-|+|+|.+..+.... + .+... ..=++|+||.|+.+ ..+.+...+...+..
T Consensus 119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~n--------------- 173 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEVN--------------- 173 (202)
T ss_pred ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHhC---------------
Confidence 37888888877542221 1 11001 13389999999987 555677777776543
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+..+++.+|+++|+|++++++|+..+.
T Consensus 174 p~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 174 PEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 457899999999999999999997653
|
|
| >PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-10 Score=92.60 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=64.9
Q ss_pred HHH-HHHHHHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC------EEEEEEEcCCC
Q psy2159 4 IWT-KFREVLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD------IVFTTHDLGGH 75 (194)
Q Consensus 4 ~~~-~~~~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~d~~g~ 75 (194)
+|+ .++++..... .......|+|+|..++|||||+.+|-+.+- +.++.+..+...+..+ ..+.+|-+.|.
T Consensus 6 lW~siL~ev~~~~~~~~~~~k~vlvlG~~~~GKttli~~L~~~e~--~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~ 83 (472)
T PF05783_consen 6 LWSSILSEVSNSSSTKLPSEKSVLVLGDKGSGKTTLIARLQGIED--PKKGLALEYTYLDVKDEDRDDLARLNVWELDGD 83 (472)
T ss_pred HHHHHHHHHHhhccccCCCCceEEEEeCCCCchHHHHHHhhccCC--CCCCcccceEEEeeccCcCCcCceeeEEEcCCC
Confidence 444 3344443322 335667999999999999999999876543 3344444444333321 47899999887
Q ss_pred ccchhhHhhhhhc----CCEEEEEEECCCCCChH
Q psy2159 76 VQARRVWRDYFPA----VDAIVFIIDASDRSRFP 105 (194)
Q Consensus 76 ~~~~~~~~~~~~~----~d~ii~v~d~~~~~~~~ 105 (194)
..+..+....+.. --++++|+|.+.|..+.
T Consensus 84 ~~~~~LLk~~lt~~~l~~t~vvIvlDlS~PW~~~ 117 (472)
T PF05783_consen 84 PSHSDLLKFALTPENLPNTLVVIVLDLSKPWNIM 117 (472)
T ss_pred cchHhHhcccCCcccccceEEEEEecCCChHHHH
Confidence 6666666554432 24788899999865433
|
The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo []. |
| >smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=82.16 Aligned_cols=89 Identities=17% Similarity=0.117 Sum_probs=63.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc-cc-cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ-HM-PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~-~~-~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
.+++++|..|+|||+|+.++....+.. +. +|.+ +........+.++.++.|++.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 479999999999999999998776642 22 3333 2222344566789999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
...++... |...++ .....+.|.++++||.|+..
T Consensus 58 ~~~s~~~~--~~~~i~-~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 58 DRDSADNK--NVPEVL-VGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred CHHHHHHH--hHHHHH-hcCCCCCcEEEEeechhhHh
Confidence 98877655 544443 33446788999999999743
|
SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. |
| >COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=97.90 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=91.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c---cc----------------cCCCcceeEEEeCC-EEEEEEEcCCCcc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q---HM----------------PTLHPTSEELSMGD-IVFTTHDLGGHVQ 77 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~---~~----------------~t~~~~~~~~~~~~-~~~~~~d~~g~~~ 77 (194)
+--+|.++|+-++||||+..+++...-. . +. -|+......+...+ ..++++|||||-+
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVD 88 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVD 88 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccc
Confidence 4448899999999999999998864321 1 10 02222234566675 9999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhhcc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFFGL 149 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~ 149 (194)
+.......++-+|+++.|+|+...- ..+....|.+..+ .+.|.++++||+|... ....+++...+..
T Consensus 89 Ft~EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~----~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~ 158 (697)
T COG0480 89 FTIEVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADK----YGVPRILFVNKMDRLGADFYLVVEQLKERLGA 158 (697)
T ss_pred cHHHHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhh----cCCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence 9999899999999999999997743 3444555666544 4799999999999865 3445566555544
|
|
| >KOG0410|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.6e-11 Score=88.97 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=102.9
Q ss_pred HhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCcc---------ch
Q psy2159 14 RLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQ---------AR 79 (194)
Q Consensus 14 ~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~---------~~ 79 (194)
+.+... +..-|.++|-.+||||||++.|++.... +.+.|.+++......++ ..+.+.||.|.-. |+
T Consensus 170 r~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ 249 (410)
T KOG0410|consen 170 RVGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQ 249 (410)
T ss_pred hhccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHH
Confidence 344333 4456669999999999999999965432 68889999988777754 6778889998432 22
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc----EEEEeeCCCCCCCCCHHHHHhhhcccCccCC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP----ILILGNKIDIFDAASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p----iiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~ 155 (194)
+ .......+|.++-|.|+++|..-.+....+.-+ +.-..++.| ++=|-||+|..+....+| +
T Consensus 250 A-TLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL-~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~------ 315 (410)
T KOG0410|consen 250 A-TLEEVAEADLLLHVVDISHPNAEEQRETVLHVL-NQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K------ 315 (410)
T ss_pred H-HHHHHhhcceEEEEeecCCccHHHHHHHHHHHH-HhcCCCcHHHHhHHHhhccccccccccCccc------c------
Confidence 2 223355689999999999998444444444333 332223223 356778888765433322 0
Q ss_pred CccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 156 KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.+||++|+|++++.+.+-..
T Consensus 316 -------------n~~v~isaltgdgl~el~~a~~~k 339 (410)
T KOG0410|consen 316 -------------NLDVGISALTGDGLEELLKAEETK 339 (410)
T ss_pred -------------CCccccccccCccHHHHHHHHHHH
Confidence 126889999999999999887654
|
|
| >KOG0461|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=88.15 Aligned_cols=158 Identities=18% Similarity=0.149 Sum_probs=99.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---cccc-------CCCcceeEEEeC---------CEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMP-------TLHPTSEELSMG---------DIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~-------t~~~~~~~~~~~---------~~~~~~~d~~g~~~~~~ 80 (194)
..+++.++|+-.||||||.+++..-... ...| |.+.....+... ...+.++|+||+...-+
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 4479999999999999999998864321 1111 222222222221 15679999999987766
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~ 155 (194)
.........|..++|+|+....--.. ..-.+-++ .....++|+||+|+.++ ...++....+.+-.
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL---- 155 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL---- 155 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHHHHHHHHH----
Confidence 66666777899999999866321111 11223333 33467888898887663 22333333332211
Q ss_pred CccCcccccC-CcceEEEEeccccC----CChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQ-MRPMELFMCSVLKR----QGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~Sa~~~----~~v~~l~~~l~~~i 193 (194)
++.+ ..+.+++++||+.| +++.|+.+.|-.++
T Consensus 156 ------e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 156 ------ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred ------HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 1122 23478999999999 89999999887654
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-10 Score=87.69 Aligned_cols=80 Identities=25% Similarity=0.352 Sum_probs=61.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC------------------EEEEEEEcCCCcc--
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD------------------IVFTTHDLGGHVQ-- 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~------------------~~~~~~d~~g~~~-- 77 (194)
.+++.++|.|++|||||.|.++..... .++.|+.|+.+.+.... ..+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 468999999999999999999998753 58889999977655421 3589999988553
Q ss_pred --chhh---HhhhhhcCCEEEEEEECCC
Q psy2159 78 --ARRV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 78 --~~~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
...+ +...++.+|+++.|+|+.+
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 3333 3444688999999999863
|
|
| >PRK10463 hydrogenase nickel incorporation protein HypB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.7e-10 Score=85.93 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.2
Q ss_pred CCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 122 DVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+-++++||+|+.+. ...+++.+.+... .+..+++++||++|+|++++.+||.++.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l---------------np~a~I~~vSA~tGeGld~L~~~L~~~~ 288 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV---------------NPEIEIILISATSGEGMDQWLNWLETQR 288 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh---------------CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3566999999999762 2344444444332 2457899999999999999999998753
|
|
| >KOG3905|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.7e-10 Score=85.85 Aligned_cols=155 Identities=20% Similarity=0.264 Sum_probs=99.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC------EEEEEEEcCCCccchhhHhhhhhc---C-
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD------IVFTTHDLGGHVQARRVWRDYFPA---V- 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~d~~g~~~~~~~~~~~~~~---~- 89 (194)
...+|+++|..|+|||||+.++-+.+...... +..+......+ .++.+|-+.|..-...+....+.. +
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs--gLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKKGS--GLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCCCC--CcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 45688899999999999999998876433333 33333333322 578899998987666665554432 2
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCC---------------------------------------------------
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADD--------------------------------------------------- 118 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 118 (194)
..+|++.|.+++...-.....|...+.++
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 36788899999744333332222222110
Q ss_pred ----------CCCCCcEEEEeeCCCCCC------CCC---HHH----HHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 119 ----------ALTDVPILILGNKIDIFD------AAS---EDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 119 ----------~~~~~piiiv~nK~D~~~------~~~---~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
...++|++||+||+|... +.. .+- +++++-.++ ...+.+|
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-----------------aaLiyTS 271 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-----------------AALIYTS 271 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-----------------ceeEEee
Confidence 123489999999999733 111 111 333333333 6789999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
+|+..|++-+..+|++.+
T Consensus 272 vKE~KNidllyKYivhr~ 289 (473)
T KOG3905|consen 272 VKETKNIDLLYKYIVHRS 289 (473)
T ss_pred cccccchHHHHHHHHHHh
Confidence 999999999999998753
|
|
| >TIGR02836 spore_IV_A stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.2e-09 Score=85.56 Aligned_cols=164 Identities=13% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC----CCC-----------ccc-------cCCCcce---e
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND----RTA-----------QHM-------PTLHPTS---E 58 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~----~~~-----------~~~-------~t~~~~~---~ 58 (194)
-+..++++..+=+ -.+.|.++|+.++|||||+|+|.+. ... -+. .|.+|.. +
T Consensus 3 ~~~iykDIa~RT~---G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~k 79 (492)
T TIGR02836 3 KVDIYKDIAERTQ---GDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNE 79 (492)
T ss_pred chhHHHHHHHHhC---CcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCc
Confidence 3445566555443 4578999999999999999999987 322 111 2444433 3
Q ss_pred EEEeC---C--EEEEEEEcCCCccch--------h---------------------hHhhhhh-cCCEEEEEE-ECCC--
Q psy2159 59 ELSMG---D--IVFTTHDLGGHVQAR--------R---------------------VWRDYFP-AVDAIVFII-DASD-- 100 (194)
Q Consensus 59 ~~~~~---~--~~~~~~d~~g~~~~~--------~---------------------~~~~~~~-~~d~ii~v~-d~~~-- 100 (194)
.+++. + .++.++||+|...-. . -....+. .+|..++|. |.+-
T Consensus 80 AvEI~~~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~d 159 (492)
T TIGR02836 80 AVEININEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITD 159 (492)
T ss_pred ceEEeccCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccc
Confidence 33332 1 689999999944211 1 0233455 788888887 6641
Q ss_pred --CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh-cccCccCCCccCcccccCCcceEEEEec--
Q psy2159 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF-GLYGLTTGKEFTPREILQMRPMELFMCS-- 175 (194)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S-- 175 (194)
.+.+......+...++. .++|+++++||+|-.... ..++.+.+ +++. .+++++|
T Consensus 160 I~Re~y~~aEe~~i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~eky~-----------------vpvl~v~c~ 218 (492)
T TIGR02836 160 IPREDYVEAEERVIEELKE---LNKPFIILLNSTHPYHPE-TEALRQELEEKYD-----------------VPVLAMDVE 218 (492)
T ss_pred cccccchHHHHHHHHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHHHhC-----------------CceEEEEHH
Confidence 12234444333333333 689999999999943221 23333333 2222 4445544
Q ss_pred cccCCChHHHHHHHhh
Q psy2159 176 VLKRQGFGNGFRWLAN 191 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~ 191 (194)
-.+.+.+..+++.++.
T Consensus 219 ~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 219 SMRESDILSVLEEVLY 234 (492)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 4667778888877654
|
A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis. |
| >KOG3886|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-11 Score=85.74 Aligned_cols=119 Identities=18% Similarity=0.308 Sum_probs=84.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC----CCccccCCCcceeEEEeC-CEEEEEEEcCCCccchh-----hHhhhhhcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR----TAQHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARR-----VWRDYFPAV 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~----~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~-----~~~~~~~~~ 89 (194)
...|++++|.+|||||++=..++.+. ....++|++..-..+.+- +..+.+||++|++.+-. .....+++.
T Consensus 3 ~~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV 82 (295)
T KOG3886|consen 3 MKKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV 82 (295)
T ss_pred ccceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence 34689999999999999877777554 235666777766666554 48999999999995432 234567889
Q ss_pred CEEEEEEECCCCCChHHH---HHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH
Q psy2159 90 DAIVFIIDASDRSRFPES---KYELDNLLADDALTDVPILILGNKIDIFDAASE 140 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~ 140 (194)
+++++|||++..+-..+. ..-+..+++ ..|...+.+..+|+|+...-..
T Consensus 83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886|consen 83 QVLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred eeeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchH
Confidence 999999999775422222 223344433 4588899999999999774333
|
|
| >KOG0085|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.1e-11 Score=86.89 Aligned_cols=135 Identities=16% Similarity=0.276 Sum_probs=93.4
Q ss_pred eEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC----------CCCCChHHHHHHHHHHHhCCCCCCCcEEE
Q psy2159 58 EELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA----------SDRSRFPESKYELDNLLADDALTDVPILI 127 (194)
Q Consensus 58 ~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~----------~~~~~~~~~~~~~~~~~~~~~~~~~piii 127 (194)
..++.....+.+.|.+|+...++-|.+++.++-.+++++.+ ++++..++....+..++..+.+.+.++|+
T Consensus 192 ypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIl 271 (359)
T KOG0085|consen 192 YPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVIL 271 (359)
T ss_pred cCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEE
Confidence 34444557788999999999988888888887777776554 34667888888999999999999999999
Q ss_pred EeeCCCCCC-CCCHHHHHhhhcccCccCCCc---cCccccc-------CCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 128 LGNKIDIFD-AASEDEVRHFFGLYGLTTGKE---FTPREIL-------QMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 128 v~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+||.|+.+ .+....+...+.......+.. ..++... +...+.-..+.|.+-+|+..+|.+..+.
T Consensus 272 FLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDt 347 (359)
T KOG0085|consen 272 FLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDT 347 (359)
T ss_pred EechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHH
Confidence 999999876 344555555554443222211 1111111 1112334457788889999999887653
|
|
| >KOG3887|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.2e-10 Score=81.56 Aligned_cols=162 Identities=17% Similarity=0.266 Sum_probs=103.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh---hHhhhhhcCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVF 94 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~ii~ 94 (194)
.+|+++|...|||||+.+.++.+..+. ...|..++...+...=..+.+||.|||-.+.. -....++++.+.++
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALif 107 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALIF 107 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEEE
Confidence 469999999999999999888775542 34455555555555457899999999886443 23456788999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccc--cCCcce
Q psy2159 95 IIDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREI--LQMRPM 169 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 169 (194)
|+|+.+. +.+....+.....+ ...+++.+-+.+.|.|-.. +...+.-+...+.-. ....+ ...-.+
T Consensus 108 vIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~-------d~l~d~gle~v~v 178 (347)
T KOG3887|consen 108 VIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTN-------DELADAGLEKVQV 178 (347)
T ss_pred EEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhh-------HHHHhhhhccceE
Confidence 9998773 44444445544443 3457788889999999544 333332222221111 00111 122234
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|+-+|-. ..++.|.|..+++++
T Consensus 179 sf~LTSIy-DHSIfEAFSkvVQkL 201 (347)
T KOG3887|consen 179 SFYLTSIY-DHSIFEAFSKVVQKL 201 (347)
T ss_pred EEEEeeec-chHHHHHHHHHHHHH
Confidence 55556554 456889998888764
|
|
| >smart00053 DYNc Dynamin, GTPase | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.5e-09 Score=76.32 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCC-Ccc--ccCCCcc--------------------------
Q psy2159 8 FREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQH--MPTLHPT-------------------------- 56 (194)
Q Consensus 8 ~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~--~~t~~~~-------------------------- 56 (194)
+.+....+|.. .....++++|+.|+||||+++.+.+..+ +.. ..|..+.
T Consensus 11 i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~ 90 (240)
T smart00053 11 LQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFD 90 (240)
T ss_pred HHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHH
Confidence 33444466643 3566899999999999999999998742 110 0000000
Q ss_pred -----------------------eeEEEe--CC-EEEEEEEcCCCccc-------------hhhHhhhhhc-CCEEEEEE
Q psy2159 57 -----------------------SEELSM--GD-IVFTTHDLGGHVQA-------------RRVWRDYFPA-VDAIVFII 96 (194)
Q Consensus 57 -----------------------~~~~~~--~~-~~~~~~d~~g~~~~-------------~~~~~~~~~~-~d~ii~v~ 96 (194)
.-.++. ++ ..+.++|+||.... ..+...+++. .+.+++|+
T Consensus 91 ~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vv 170 (240)
T smart00053 91 EVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVT 170 (240)
T ss_pred HHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEE
Confidence 001111 11 46899999997521 1234446664 45888899
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|+...-.-.........+ ...+.|+++|+||.|..+
T Consensus 171 da~~d~~~~d~l~ia~~l----d~~~~rti~ViTK~D~~~ 206 (240)
T smart00053 171 PANVDLANSDALKLAKEV----DPQGERTIGVITKLDLMD 206 (240)
T ss_pred ECCCCCCchhHHHHHHHH----HHcCCcEEEEEECCCCCC
Confidence 876532222212222222 225789999999999876
|
Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event. |
| >COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.6e-10 Score=86.72 Aligned_cols=124 Identities=24% Similarity=0.259 Sum_probs=85.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-c------------------------cccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-Q------------------------HMPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~------------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
+-...|+.+|.+|||||-..++--.-. + ..-++....-+++|.+..+++.|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 336778999999999999987643111 0 001122234567888999999999999
Q ss_pred ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcc
Q psy2159 76 VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE---DEVRHFFGL 149 (194)
Q Consensus 76 ~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~ 149 (194)
+++..-.-.-+..+|..+.|+|+... .+.-...+.+ .....++|++=.+||.|.....+. +|+.+.++.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT~KLfe---VcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQTLKLFE---VCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccC--ccHHHHHHHH---HHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 99988777778889999999998773 3333322333 334489999999999997653332 344554443
|
|
| >PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.1e-10 Score=77.73 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=43.7
Q ss_pred EEEEEEEcCCCcc----chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 65 IVFTTHDLGGHVQ----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 65 ~~~~~~d~~g~~~----~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
..+.++|+||... ....+..++..+|++++|.+++...+-... ..+...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcC---CCCeEEEEEcCC
Confidence 4589999999753 235677788999999999999885544433 334444333 344589999984
|
Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D .... |
| >KOG0468|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-10 Score=92.33 Aligned_cols=111 Identities=19% Similarity=0.331 Sum_probs=78.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----------C----------CCcceeEEEeC-----CEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----------T----------LHPTSEELSMG-----DIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----------t----------~~~~~~~~~~~-----~~~~~~~d~~g 74 (194)
+-.++.++|+-.+|||+|+..|.....+...+ + +..+..++-.. .+-+++.||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 44467788999999999999998765432111 1 11111222221 26789999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.......++.+|++++++|+.+.-.+...+ .+...++ .+.|+++|+||+|..
T Consensus 207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr-~ikhaiq----~~~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER-IIKHAIQ----NRLPIVVVINKVDRL 262 (971)
T ss_pred cccchHHHHHHhhhcceEEEEEEcccCceeeHHH-HHHHHHh----ccCcEEEEEehhHHH
Confidence 9999988888899999999999998865444322 2333333 689999999999953
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.7e-10 Score=78.08 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=60.4
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
.+.....+++|++++|+|++++..... ..+..++.. .++|+++++||+|+.+....+++....+.
T Consensus 4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---------- 68 (156)
T cd01859 4 RLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVLE---LGKKLLIVLNKADLVPKEVLEKWKSIKES---------- 68 (156)
T ss_pred HHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHHh---CCCcEEEEEEhHHhCCHHHHHHHHHHHHh----------
Confidence 456667778999999999987543322 122222222 46899999999998542111111111111
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||+++.|++++++.+.+.+
T Consensus 69 -------~~~~~~~iSa~~~~gi~~L~~~l~~~~ 95 (156)
T cd01859 69 -------EGIPVVYVSAKERLGTKILRRTIKELA 95 (156)
T ss_pred -------CCCcEEEEEccccccHHHHHHHHHHHH
Confidence 124689999999999999999998754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.5e-09 Score=88.11 Aligned_cols=116 Identities=11% Similarity=0.059 Sum_probs=72.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccch-------hh---Hhhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RV---WRDYF 86 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~---~~~~~ 86 (194)
+++|+++|.+|+||||++|.+++....... .|..........++..+.++||||..... .. ...++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 358999999999999999999997643222 22222222334577899999999976431 11 12223
Q ss_pred h--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCC-CCCcEEEEeeCCCCCC
Q psy2159 87 P--AVDAIVFIIDASDRSRFPESKYELDNLLADDAL-TDVPILILGNKIDIFD 136 (194)
Q Consensus 87 ~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~piiiv~nK~D~~~ 136 (194)
. .+|++++|..++...........+..+...... -=..+||+.|+.|..+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 3 479999998776433222333344444332110 1156799999999765
|
The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M. |
| >PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments [] | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.7e-10 Score=84.65 Aligned_cols=110 Identities=19% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc-----------cCCCcce--eEEEeCC--EEEEEEEcCCCccch---hhH
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-----------PTLHPTS--EELSMGD--IVFTTHDLGGHVQAR---RVW 82 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~-----------~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~---~~~ 82 (194)
.++|+|+|.+|+|||||+|.|++....... .+..... ..+..++ .++.++||||....- ..|
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 468999999999999999999987553221 1111111 2233344 689999999944210 000
Q ss_pred -----------hh-------------hhhcCCEEEEEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 83 -----------RD-------------YFPAVDAIVFIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 83 -----------~~-------------~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.. .-...|+++|.++++... .... ...+..+. ...++|-|+.|+|...
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~Di~~mk~Ls-----~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPLDIEFMKRLS-----KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HHHHHHHHHHT-----TTSEEEEEESTGGGS-
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHHHHHHHHHhc-----ccccEEeEEecccccC
Confidence 00 113478999999986532 3333 34455552 3578999999999855
|
Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C. |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.3e-10 Score=86.14 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=63.7
Q ss_pred hHhhhhhcCCEEEEEEECCCCCC-hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSR-FPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
+....+.++|.+++|+|+.++.. ...+..++... .. .++|+++|+||+|+......+++.+.+....
T Consensus 82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a-~~---~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g-------- 149 (352)
T PRK12289 82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKA-ES---TGLEIVLCLNKADLVSPTEQQQWQDRLQQWG-------- 149 (352)
T ss_pred eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEchhcCChHHHHHHHHHHHhcC--------
Confidence 34445789999999999987652 33445555444 22 5799999999999965322233333333322
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+++++||+++.|++++++.+...
T Consensus 150 ---------~~v~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 150 ---------YQPLFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred ---------CeEEEEEcCCCCCHHHHhhhhccc
Confidence 568999999999999999998654
|
|
| >KOG1707|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.5e-09 Score=83.77 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=98.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
.++.+++.++|+.++|||.+++.+.+..+.. ...+..+. ...+...| ..+.+-|.+-. ...-+.... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 3567789999999999999999999987763 32333332 22233333 45555566544 222222222 579999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.++||++++.+|......+...-.. ...|+++|++|+|+.+ ...+++....++..
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~----------------- 559 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLP----------------- 559 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcCCC-----------------
Confidence 9999999999999988766655333 6799999999999865 34446666655442
Q ss_pred ceEEEEeccccCCChHHHHHHHhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+.+..|.+...+ .++|..|..
T Consensus 560 --~P~~~S~~~~~s-~~lf~kL~~ 580 (625)
T KOG1707|consen 560 --PPIHISSKTLSS-NELFIKLAT 580 (625)
T ss_pred --CCeeeccCCCCC-chHHHHHHH
Confidence 244555553223 777777654
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-09 Score=77.85 Aligned_cols=100 Identities=16% Similarity=0.206 Sum_probs=63.8
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~ 156 (194)
+...+..+++.+|++++|+|++++... .. ..+ ... ..++|+++|+||+|+.+. ...+++..+.....
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-~~-~~l---~~~--~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~----- 91 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGS-LI-PRL---RLF--GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKA----- 91 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCc-cc-hhH---HHh--cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHH-----
Confidence 567778888999999999999875421 11 111 111 146899999999998653 22333333320000
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..........++++||++|.|+++++++|.+.+
T Consensus 92 ----~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l 124 (190)
T cd01855 92 ----AAGLGLKPKDVILISAKKGWGVEELINAIKKLA 124 (190)
T ss_pred ----HhhcCCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 000111123589999999999999999998754
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >KOG0705|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-10 Score=89.03 Aligned_cols=157 Identities=20% Similarity=0.277 Sum_probs=115.9
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
++...+++|+.++|..++|||+++.++..+.|.+-..+.+... +.+..++ ..+.+.|.+|... .+|...+|+
T Consensus 24 lsrsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda 98 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA 98 (749)
T ss_pred eecccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence 4456789999999999999999999999998886555555543 3344443 5677778877443 556778999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+|+||.+.+..+|+.+......+..+......|+++++++.-... .+...+..... .+..
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~----------------~~~k 162 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLS----------------AQMK 162 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHH----------------HhcC
Confidence 999999999999999998888877666667788899988654322 22222333332 2233
Q ss_pred ceEEEEeccccCCChHHHHHHHhhh
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+++++|.+|.++...|+.+..+
T Consensus 163 rcsy~et~atyGlnv~rvf~~~~~k 187 (749)
T KOG0705|consen 163 RCSYYETCATYGLNVERVFQEVAQK 187 (749)
T ss_pred ccceeecchhhhhhHHHHHHHHHHH
Confidence 3679999999999999999988764
|
|
| >KOG0460|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-09 Score=81.33 Aligned_cols=161 Identities=17% Similarity=0.208 Sum_probs=108.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcC----C------CC--cccc---CCCc--ceeEEEeC--CEEEEEEEcCCCcc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKND----R------TA--QHMP---TLHP--TSEELSMG--DIVFTTHDLGGHVQ 77 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~----~------~~--~~~~---t~~~--~~~~~~~~--~~~~~~~d~~g~~~ 77 (194)
..+++++|.-+|+-..|||||--.+..- . |. ...| ..|. +...++|. .+.+.-.|+||+.+
T Consensus 50 R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 50 RDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHAD 129 (449)
T ss_pred cCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHH
Confidence 4578999999999999999998877652 1 11 0111 1222 23344443 47888999999998
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC-----CHHHHHhhhcccCc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA-----SEDEVRHFFGLYGL 152 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-----~~~e~~~~~~~~~~ 152 (194)
|-.-.-.-...-|+.|+|+..+|.. .++.++.+.-..+. .-..+++.+||.|+.++. ..-|+++.+..++
T Consensus 130 YIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g- 204 (449)
T KOG0460|consen 130 YIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG- 204 (449)
T ss_pred HHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC-
Confidence 8764444456689999999998864 66766655555443 235678889999998532 2345666666666
Q ss_pred cCCCccCcccccCCcceEEEEeccc---cCC-------ChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVL---KRQ-------GFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~---~~~-------~v~~l~~~l~~~i 193 (194)
......+++.-||. +|. .|.+|++++-.+|
T Consensus 205 -----------f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyi 244 (449)
T KOG0460|consen 205 -----------FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYI 244 (449)
T ss_pred -----------CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccC
Confidence 66677888887764 442 3666666665544
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-09 Score=82.76 Aligned_cols=87 Identities=18% Similarity=0.205 Sum_probs=60.6
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCccCcccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+.++|.+++|+|+.++.........+...+.. .++|+++|+||+|+.+. ....++...++..
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~------------- 140 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLEEARELLALYRAI------------- 140 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-------------
Confidence 458899999999998887665553333333333 57899999999999632 1112223333221
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+++++||+++.|++++++.+..
T Consensus 141 ----g~~v~~vSA~~g~gi~~L~~~l~g 164 (298)
T PRK00098 141 ----GYDVLELSAKEGEGLDELKPLLAG 164 (298)
T ss_pred ----CCeEEEEeCCCCccHHHHHhhccC
Confidence 257999999999999999998754
|
|
| >KOG1486|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-08 Score=73.56 Aligned_cols=82 Identities=17% Similarity=0.284 Sum_probs=62.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh-------hHhhhhhcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-------VWRDYFPAVD 90 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~d 90 (194)
..+++++|.|.+|||||+..++.-... ..+.|...-.+.+.+++..+++.|.||--+..+ ..-...+-+|
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaD 141 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTAD 141 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeeccc
Confidence 348999999999999999999865432 455566666789999999999999999543221 1222456789
Q ss_pred EEEEEEECCCCC
Q psy2159 91 AIVFIIDASDRS 102 (194)
Q Consensus 91 ~ii~v~d~~~~~ 102 (194)
.+++|.|++..+
T Consensus 142 lilMvLDatk~e 153 (364)
T KOG1486|consen 142 LILMVLDATKSE 153 (364)
T ss_pred EEEEEecCCcch
Confidence 999999997744
|
|
| >COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.7e-09 Score=82.82 Aligned_cols=123 Identities=17% Similarity=0.211 Sum_probs=82.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
++++-+.++||||+|||||++.+......++...+...+..+....+.+++..+| ....++ ....+.+|.+++++|.
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp--~Dl~~m-iDvaKIaDLVlLlIdg 143 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECP--SDLHQM-IDVAKIADLVLLLIDG 143 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeCh--HHHHHH-HhHHHhhheeEEEecc
Confidence 4566666999999999999999987644444444444444555556899999999 334443 3447789999999998
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC-CCHHHHHhhhcc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDA-ASEDEVRHFFGL 149 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~-~~~~e~~~~~~~ 149 (194)
+- .|+...-.+..++.. ++.| ++-|+|+.|+... ....++++.++.
T Consensus 144 nf--GfEMETmEFLnil~~---HGmPrvlgV~ThlDlfk~~stLr~~KKrlkh 191 (1077)
T COG5192 144 NF--GFEMETMEFLNILIS---HGMPRVLGVVTHLDLFKNPSTLRSIKKRLKH 191 (1077)
T ss_pred cc--CceehHHHHHHHHhh---cCCCceEEEEeecccccChHHHHHHHHHHhh
Confidence 76 455444444455554 3444 5677899999873 344455554433
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.6e-09 Score=80.20 Aligned_cols=88 Identities=15% Similarity=0.073 Sum_probs=63.6
Q ss_pred hhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 83 RDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
...+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+.............
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~~~------------ 136 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEALA------------ 136 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHHHh------------
Confidence 44578899999999999887 67777776665533 47899999999999654111111111211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+++++||+++.|++++++.+..
T Consensus 137 -----~g~~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 137 -----LGYPVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred -----CCCeEEEEECCCCccHHHHHhhhcc
Confidence 2267899999999999999998764
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=79.51 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=64.7
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
..++|.+++|++.....++..+..|+... .. .++|+++|+||+|+.+....+.+....+.+ .
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a-~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y--------------~ 179 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVAC-ET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIY--------------R 179 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHH-Hh---cCCCEEEEEECccCCCcHHHHHHHHHHHHH--------------H
Confidence 46799999999998877888888777644 22 578999999999997643222333332221 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....+++++||+++.|+++++++|...
T Consensus 180 ~~g~~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 180 NIGYRVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred hCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence 112689999999999999999998764
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-08 Score=70.80 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC-CEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG-DIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g 74 (194)
...+++++|.||+|||||+|++.+.....+.++.+.+.....+. +..+.+.||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcC
Confidence 46788899999999999999999887766666655554332222 23578999998
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0099|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-08 Score=73.72 Aligned_cols=83 Identities=23% Similarity=0.474 Sum_probs=59.7
Q ss_pred CcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC-------CC---ChHHHHHHHHHHHhCCCCCCC
Q psy2159 54 HPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------RS---RFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 54 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~-------~~---~~~~~~~~~~~~~~~~~~~~~ 123 (194)
|.....+..+..++.++|.+||...++-|.+.+.++-++++|+..+. .. .+.+....+..+-.......+
T Consensus 191 GIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ti 270 (379)
T KOG0099|consen 191 GIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTI 270 (379)
T ss_pred ceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhh
Confidence 33344566677889999999999999999999999999999998764 11 122222333333333445678
Q ss_pred cEEEEeeCCCCCC
Q psy2159 124 PILILGNKIDIFD 136 (194)
Q Consensus 124 piiiv~nK~D~~~ 136 (194)
.+|+.+||.|+..
T Consensus 271 svIlFLNKqDlla 283 (379)
T KOG0099|consen 271 SVILFLNKQDLLA 283 (379)
T ss_pred heeEEecHHHHHH
Confidence 8999999999754
|
|
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-08 Score=70.01 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=57.4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+.++|++++|+|+.++... ....+...+.. ...++|+++|+||+|+.+. +++..++..+. .
T Consensus 5 ~l~~aD~il~VvD~~~p~~~--~~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~---~~~~~~~~~~~------------~ 66 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT--RCKHVEEYLKK-EKPHKHLIFVLNKCDLVPT---WVTARWVKILS------------K 66 (157)
T ss_pred hhhhCCEEEEEEECCCCccc--cCHHHHHHHHh-ccCCCCEEEEEEchhcCCH---HHHHHHHHHHh------------c
Confidence 36789999999999886322 11223333332 1246899999999999643 23333332221 0
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
... ...+++||+.+.|++++++++.+.
T Consensus 67 ~~~-~~~~~iSa~~~~~~~~L~~~l~~~ 93 (157)
T cd01858 67 EYP-TIAFHASINNPFGKGSLIQLLRQF 93 (157)
T ss_pred CCc-EEEEEeeccccccHHHHHHHHHHH
Confidence 111 236889999999999999998764
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >COG5258 GTPBP1 GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.7e-08 Score=76.04 Aligned_cols=168 Identities=15% Similarity=0.105 Sum_probs=100.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-c----------------ccCCCcceeEEEe------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-H----------------MPTLHPTSEELSM------------------ 62 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~----------------~~t~~~~~~~~~~------------------ 62 (194)
.+.+..+.++|+-+.|||||+-+|....... . .-|-+.....+-+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4677788899999999999999888764431 0 0011111111111
Q ss_pred -----CCEEEEEEEcCCCccchhhHhh--hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 63 -----GDIVFTTHDLGGHVQARRVWRD--YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 63 -----~~~~~~~~d~~g~~~~~~~~~~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.+.-+.+.|+.|++.+-+.... +-+..|-.++++.+++..+.. .++.+--. .. -+.|+++++||+|+.
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~-~a---~~lPviVvvTK~D~~ 268 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIA-LA---MELPVIVVVTKIDMV 268 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhh-hh---hcCCEEEEEEecccC
Confidence 1245899999999987653322 335689999999888743222 22222222 21 578999999999998
Q ss_pred CCCCH----HHHHhhhcccCccCCCc---cCc---ccc--cCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 136 DAASE----DEVRHFFGLYGLTTGKE---FTP---REI--LQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 136 ~~~~~----~e~~~~~~~~~~~~~~~---~~~---~~~--~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
++... +++...++...+....- ... +.. .+....|+|.+|+.+|+|.+-|.+-+.
T Consensus 269 ~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~ 335 (527)
T COG5258 269 PDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFL 335 (527)
T ss_pred cHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHH
Confidence 74433 34444443322111100 011 111 222357999999999999887665543
|
|
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=71.84 Aligned_cols=56 Identities=27% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~ 75 (194)
....+++++|.|++|||||+|++.+.....+.+..|.+.. .+..+ ..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~-~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLD-KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeC-CCEEEEECcCC
Confidence 4558999999999999999999999877665555555542 22333 46889999983
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >KOG0466|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-09 Score=78.53 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=101.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcc------ccCCCc-----------------------------ceeEEEeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQH------MPTLHP-----------------------------TSEELSMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~------~~t~~~-----------------------------~~~~~~~~~ 64 (194)
-.++|.-+|+-..||||+++.+.+-..... .-|+.. +.-..+..+
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 346888999999999999998877522110 001000 000111111
Q ss_pred --------EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 --------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+.+.++|+||++-.-+....-..-.|++++++..++...-.+..+.+..+-.. .=+.++++-||+|+..
T Consensus 117 ~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM---~LkhiiilQNKiDli~ 193 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM---KLKHIIILQNKIDLIK 193 (466)
T ss_pred CCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh---hhceEEEEechhhhhh
Confidence 46899999999976665555455568888888877755555554444433211 2357899999999977
Q ss_pred CCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 137 AAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 137 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+.. .++..+..+... ..-....+++++||.-+.|++-+.++|+++++
T Consensus 194 e~~A~eq~e~I~kFi~-----------~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 194 ESQALEQHEQIQKFIQ-----------GTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred HHHHHHHHHHHHHHHh-----------ccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 322 222222222221 12334478999999999999999999998873
|
|
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-08 Score=70.93 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=58.2
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
......+..+|.+++|+|++++...... . +...+ .++|+++++||+|+.+.....+..+.++.
T Consensus 11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~-i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~---------- 73 (171)
T cd01856 11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-L-LEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES---------- 73 (171)
T ss_pred HHHHHHHhhCCEEEEEeeccCccCcCCh-h-hHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh----------
Confidence 3445567889999999999875432221 1 22221 35799999999998643111122222221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....++.+||+++.|++++.+.+.+.
T Consensus 74 -------~~~~vi~iSa~~~~gi~~L~~~l~~~ 99 (171)
T cd01856 74 -------KGEKVLFVNAKSGKGVKKLLKAAKKL 99 (171)
T ss_pred -------cCCeEEEEECCCcccHHHHHHHHHHH
Confidence 11457899999999999999998775
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0459|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-09 Score=81.78 Aligned_cols=162 Identities=15% Similarity=0.082 Sum_probs=102.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC------------------------CC----------ccccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR------------------------TA----------QHMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~------------------------~~----------~~~~t~~~~~~~~~~~~ 64 (194)
+.+.+++++|+-.+||||+-..+.... .+ +...|++.....++...
T Consensus 77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~ 156 (501)
T KOG0459|consen 77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN 156 (501)
T ss_pred CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence 578899999999999999877655420 00 11224445556677777
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC---CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----C
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----A 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~ 137 (194)
..+++.|.||+..+....-.-..++|..++|+++.- +..|+.--+.-..........-...|+++||+|-+. .
T Consensus 157 ~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~ 236 (501)
T KOG0459|consen 157 KRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 236 (501)
T ss_pred eeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcch
Confidence 899999999999887766666788999999998743 222332211111111111224578899999999765 2
Q ss_pred CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 138 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
...+|+...+..... ...........|++||..+|.++.+..+
T Consensus 237 eRy~E~~~k~~~fLr-------~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 237 ERYEECKEKLQPFLR-------KLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred hhHHHHHHHHHHHHH-------HhcccCCCCceeeecccccccchhhccc
Confidence 233444444433220 0111233456799999999999887543
|
|
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-08 Score=75.37 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=62.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC-C---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccch-
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT-A---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~-~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~- 79 (194)
+++.++|.|++|||||.+.+++... . .++.|..++.+.+..++ ..+.+.|.||.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6899999999999999999999876 3 36668889888777655 368999999976421
Q ss_pred ------hhHhhhhhcCCEEEEEEECCC
Q psy2159 80 ------RVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 80 ------~~~~~~~~~~d~ii~v~d~~~ 100 (194)
......++.+|+++.|++..+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 234556789999999999853
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >KOG1954|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=73.01 Aligned_cols=123 Identities=22% Similarity=0.260 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC--c--cccCCCcceeEE---------------E----e---------------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA--Q--HMPTLHPTSEEL---------------S----M--------------- 62 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~--~--~~~t~~~~~~~~---------------~----~--------------- 62 (194)
..=|+++|+-..||||+|+.++...++ . ..||.+.....+ + +
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 345788999999999999999999887 2 233322211111 0 0
Q ss_pred ----CC---EEEEEEEcCCCcc-----------chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc
Q psy2159 63 ----GD---IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP 124 (194)
Q Consensus 63 ----~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p 124 (194)
.+ .+++++||||--+ +.....=+...+|.|+++||+.-.+--++....+..+.. +.-.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~Edk 213 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDK 213 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----Ccce
Confidence 01 3599999999443 223344467889999999999877666666666666643 4557
Q ss_pred EEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 125 ILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 125 iiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
+-||+||.|..+ .+++...+...
T Consensus 214 iRVVLNKADqVd---tqqLmRVyGAL 236 (532)
T KOG1954|consen 214 IRVVLNKADQVD---TQQLMRVYGAL 236 (532)
T ss_pred eEEEeccccccC---HHHHHHHHHHH
Confidence 889999999855 45555554443
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.2e-08 Score=67.39 Aligned_cols=58 Identities=26% Similarity=0.244 Sum_probs=43.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee-EEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE-ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+++||||++|++.+.....+.++.+.+.. .+...+..+.+|||||.
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 34567899999999999999999998766666777766542 11112347899999993
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.5e-08 Score=68.20 Aligned_cols=53 Identities=21% Similarity=0.246 Sum_probs=39.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc--eeEEEeCCEEEEEEEcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT--SEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~d~~g~ 75 (194)
.+++++|.+|+||||++|++.+........+.+.+ ...+..++ .+.+|||||.
T Consensus 84 ~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 84 ATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 38899999999999999999988765443333333 33444444 6799999995
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.5e-08 Score=68.05 Aligned_cols=82 Identities=18% Similarity=0.289 Sum_probs=54.0
Q ss_pred CEEEEEEECCCCCChHHHHHHHH-HHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELD-NLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
|.+++|+|+.++.+.... ++. ..+.. .++|+++|+||+|+.+. +++..++..+. ....
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~---~~~p~IiVlNK~Dl~~~---~~~~~~~~~~~-------------~~~~ 59 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE---KGKKLILVLNKADLVPK---EVLRKWLAYLR-------------HSYP 59 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc---CCCCEEEEEechhcCCH---HHHHHHHHHHH-------------hhCC
Confidence 789999999887654432 232 23222 57899999999998542 33333221110 0112
Q ss_pred eEEEEeccccCCChHHHHHHHhhh
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..++.+||+++.|++++.+.+.+.
T Consensus 60 ~~ii~vSa~~~~gi~~L~~~i~~~ 83 (155)
T cd01849 60 TIPFKISATNGQGIEKKESAFTKQ 83 (155)
T ss_pred ceEEEEeccCCcChhhHHHHHHHH
Confidence 568999999999999999988653
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >KOG1143|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.8e-08 Score=75.24 Aligned_cols=163 Identities=17% Similarity=0.199 Sum_probs=98.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-----------------ccc-------CCCcce--eEEEe-----------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----------------HMP-------TLHPTS--EELSM----------- 62 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-----------------~~~-------t~~~~~--~~~~~----------- 62 (194)
-+.++.++|...+|||||+-.+..+.... ... +.|++. +.++|
T Consensus 166 ievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 166 IEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred eEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 45789999999999999999888764321 111 222221 11222
Q ss_pred -CCEEEEEEEcCCCccchhhHhhhhhc--CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 63 -GDIVFTTHDLGGHVQARRVWRDYFPA--VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 63 -~~~~~~~~d~~g~~~~~~~~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
...-++++|.+|+.+|....-..+.+ .|...+|++++....+.. ++.+--++- .+.|++++++|+|+.....
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~ 320 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQG 320 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchh
Confidence 22468999999999887654443332 578888888766433222 222222221 4789999999999987554
Q ss_pred HHHHHhhhcccCccCCCccCc-------------ccccCCcceEEEEeccccCCChHHHHH
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTP-------------REILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.+...+.+.....+..+...+ ...+.....++|.+|+.+|+|++-+-.
T Consensus 321 ~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 321 LKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 444433332222222222111 122344567899999999999876543
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.7e-08 Score=78.29 Aligned_cols=100 Identities=18% Similarity=0.327 Sum_probs=66.2
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCcc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLT 153 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~ 153 (194)
.+++......+...++++++|+|+.+... .....+.+.. .+.|+++|+||+|+.+ ....+++.+++....
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~--s~~~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~-- 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG--SLIPELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRA-- 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC--CccHHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHHHH--
Confidence 44677778888888999999999977431 1111222221 3679999999999865 344555555542211
Q ss_pred CCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
+..+.....++.+||++|.|++++++.+.+
T Consensus 121 --------k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~ 150 (360)
T TIGR03597 121 --------KELGLKPVDIILVSAKKGNGIDELLDKIKK 150 (360)
T ss_pred --------HHcCCCcCcEEEecCCCCCCHHHHHHHHHH
Confidence 001111125899999999999999999865
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.3e-08 Score=74.53 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC
Q psy2159 73 GGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG 151 (194)
Q Consensus 73 ~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~ 151 (194)
|||- .........+..+|++++|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+++.+.++..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~- 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEEK- 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHHc-
Confidence 5543 223344556788999999999987654332 2233332 257999999999985421122222223211
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...++.+||+++.|++++.+.+.+.+
T Consensus 77 ----------------~~~vi~iSa~~~~gi~~L~~~i~~~~ 102 (276)
T TIGR03596 77 ----------------GIKALAINAKKGKGVKKIIKAAKKLL 102 (276)
T ss_pred ----------------CCeEEEEECCCcccHHHHHHHHHHHH
Confidence 14689999999999999998887643
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >KOG1491|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=7e-08 Score=73.37 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=65.7
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGG 74 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g 74 (194)
++...+++++.++|.|++||||+.|.+++.... .++.|++++...+.... ..++++|.+|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 344457889999999999999999999998765 47779999877765532 4699999998
Q ss_pred Cccc----hhh---HhhhhhcCCEEEEEEECCC
Q psy2159 75 HVQA----RRV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 75 ~~~~----~~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
.... ..+ +...++.+|+++-|+++.+
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 6542 222 3445678999999998754
|
|
| >KOG2486|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.3e-08 Score=71.43 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=91.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccc-cCCCcceeE-EEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHM-PTLHPTSEE-LSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~-~t~~~~~~~-~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
..+.++++.|.+++|||+|+|.+...+.. ... ++.+.+... ...-+..+.++|.||..+ .......+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 45689999999999999999999987654 222 244444322 222346889999999332 12233333
Q ss_pred hhc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC------HHHHHhhhcccCccCCC
Q psy2159 86 FPA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS------EDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 86 ~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------~~e~~~~~~~~~~~~~~ 156 (194)
+.. --.+.+++|++-+ ++....-..+++.+ .+.|+.+|.||||...... ...+...+....
T Consensus 214 ~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~----- 283 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLI----- 283 (320)
T ss_pred HHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhcc-----
Confidence 322 2345556676552 33333333444444 6899999999999765211 111111111111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
........+.+.+|+.++.|+++|.-.+.+
T Consensus 284 -----~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 284 -----RGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred -----ccceeccCCceeeecccccCceeeeeehhh
Confidence 011112234667999999999988655543
|
|
| >KOG1487|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=71.32 Aligned_cols=149 Identities=17% Similarity=0.169 Sum_probs=95.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--cc-ccCCCcceeEEEeCCEEEEEEEcCCCccch----h---hHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--QH-MPTLHPTSEELSMGDIVFTTHDLGGHVQAR----R---VWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~----~---~~~~~~~~~d~i 92 (194)
++.++|.|.+||||++..+.+...+ .+ +.|.-...+.+.+.+-++++.|.||--+.. . ......+-|+++
T Consensus 61 ~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli 140 (358)
T KOG1487|consen 61 RVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLI 140 (358)
T ss_pred eeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEE
Confidence 8899999999999999999986433 22 223333346677888999999999854321 1 122335678999
Q ss_pred EEEEECCCCCChHHHHH-----------------------------------------HHHHHHhCC-------------
Q psy2159 93 VFIIDASDRSRFPESKY-----------------------------------------ELDNLLADD------------- 118 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~-----------------------------------------~~~~~~~~~------------- 118 (194)
++|.|+..|-+...+.+ .+.++..+.
T Consensus 141 ~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~Dd 220 (358)
T KOG1487|consen 141 FIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATADD 220 (358)
T ss_pred EEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchhh
Confidence 99999865433322221 111111110
Q ss_pred -----CC--CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 119 -----AL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 119 -----~~--~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
.. .-.|.+.+.||+|... .+|+.-.. +....+++||.++=|++++++.+-+
T Consensus 221 LIdvVegnr~yVp~iyvLNkIdsIS---iEELdii~-------------------~iphavpISA~~~wn~d~lL~~mwe 278 (358)
T KOG1487|consen 221 LIDVVEGNRIYVPCIYVLNKIDSIS---IEELDIIY-------------------TIPHAVPISAHTGWNFDKLLEKMWE 278 (358)
T ss_pred hhhhhccCceeeeeeeeecccceee---eeccceee-------------------eccceeecccccccchHHHHHHHhh
Confidence 11 1367788888888532 33332222 3366899999999999999998876
Q ss_pred hc
Q psy2159 192 YI 193 (194)
Q Consensus 192 ~i 193 (194)
.+
T Consensus 279 yL 280 (358)
T KOG1487|consen 279 YL 280 (358)
T ss_pred cc
Confidence 54
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-08 Score=66.57 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=50.2
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
...+..+|++++|+|+.++.+... ..+..++.... .++|+++++||+|+.+.....++.+.++...
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~----------- 71 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEG----------- 71 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcC-----------
Confidence 445788999999999988764432 22333333211 5789999999999865322233334343222
Q ss_pred ccCCcceEEEEeccccCCC
Q psy2159 163 ILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~ 181 (194)
..++++||+++.+
T Consensus 72 ------~~ii~iSa~~~~~ 84 (141)
T cd01857 72 ------IVVVFFSALKENA 84 (141)
T ss_pred ------CeEEEEEecCCCc
Confidence 5688999987763
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.6e-08 Score=73.59 Aligned_cols=58 Identities=19% Similarity=0.259 Sum_probs=43.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
..+.++++++|.|++||||++|++.+.+...+.++.+.+.. .+..+ ..+.++||||..
T Consensus 118 ~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPGi~ 177 (287)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLG-KGLELLDTPGIL 177 (287)
T ss_pred CcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeC-CcEEEEECCCcC
Confidence 34668999999999999999999999877655555555433 23333 468899999964
|
|
| >COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-07 Score=70.92 Aligned_cols=121 Identities=17% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-----------cccCCCcceeEE--EeCC--EEEEEEEcCCCccc---hh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----------HMPTLHPTSEEL--SMGD--IVFTTHDLGGHVQA---RR 80 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~---~~ 80 (194)
--.+.|+++|+.|+|||||+|.|++..... ..+|+....... .-++ ..+++.||||-.+. ..
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 356799999999999999999999874321 112222222222 2334 68999999995431 11
Q ss_pred hH-----------hhh--------------hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 81 VW-----------RDY--------------FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 81 ~~-----------~~~--------------~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
.| ..+ -..+++++|.+.++.-. ...+. .....+. ...-+|-|+.|+|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls-----~~vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLS-----KRVNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHh-----cccCeeeeeecccc
Confidence 11 111 13478889988765532 33332 3344443 34568889999998
Q ss_pred CCCCCHHHHHh
Q psy2159 135 FDAASEDEVRH 145 (194)
Q Consensus 135 ~~~~~~~e~~~ 145 (194)
....+..+.++
T Consensus 175 lT~~El~~~K~ 185 (373)
T COG5019 175 LTDDELAEFKE 185 (373)
T ss_pred CCHHHHHHHHH
Confidence 66444444333
|
|
| >TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF | Back alignment and domain information |
|---|
Probab=98.63 E-value=8.4e-08 Score=72.96 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=41.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~ 75 (194)
.+..+++++|.||+|||||+|++.+.....+.+..+.+. ..+..+ ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 467899999999999999999999877654444444332 233443 36799999997
|
Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=59.25 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..++|++.|+||+||||++..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4568999999999999999998874
|
|
| >PRK09563 rbgA GTPase YlqF; Reviewed | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.3e-07 Score=72.31 Aligned_cols=97 Identities=21% Similarity=0.298 Sum_probs=62.7
Q ss_pred cCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 72 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 72 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
.|||- .........+..+|++++|+|+.++.+... ..+..++ .++|+++|+||+|+.+....+++.+.++..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~ 79 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEVTKKWIEYFEEQ 79 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHHHHHHHHHHHHc
Confidence 45554 222334555788999999999987654332 2233332 268999999999985431122233333211
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...++.+||+++.|++++.+.+.+.
T Consensus 80 -----------------~~~vi~vSa~~~~gi~~L~~~l~~~ 104 (287)
T PRK09563 80 -----------------GIKALAINAKKGQGVKKILKAAKKL 104 (287)
T ss_pred -----------------CCeEEEEECCCcccHHHHHHHHHHH
Confidence 1467899999999999999988764
|
|
| >KOG2655|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=71.25 Aligned_cols=115 Identities=16% Similarity=0.178 Sum_probs=69.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----------cccCCCcceeE--EEeCC--EEEEEEEcCCCccch------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------HMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQAR------ 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----------~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~------ 79 (194)
-.+.++++|++|.|||||+|.|+...... ...|+...... ++-+| .++++.||||..+.-
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 34789999999999999999999875431 11122333333 33344 688999999954311
Q ss_pred --------hhHhhh-----------h--hcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 80 --------RVWRDY-----------F--PAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 80 --------~~~~~~-----------~--~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+....+ + ..+++.+|.+.++.-. +.... .....+. ....+|-|+-|+|....
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l~-----~~vNiIPVI~KaD~lT~ 173 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKLS-----KKVNLIPVIAKADTLTK 173 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHHh-----ccccccceeeccccCCH
Confidence 111111 1 2578899988875532 33332 2333332 45778899999997653
Q ss_pred CCH
Q psy2159 138 ASE 140 (194)
Q Consensus 138 ~~~ 140 (194)
...
T Consensus 174 ~El 176 (366)
T KOG2655|consen 174 DEL 176 (366)
T ss_pred HHH
Confidence 333
|
|
| >KOG0447|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.3e-06 Score=69.27 Aligned_cols=132 Identities=18% Similarity=0.290 Sum_probs=89.6
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-c-------ccc-----------------------------------
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q-------HMP----------------------------------- 51 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~-------~~~----------------------------------- 51 (194)
......-.+++|+|...+||||.+..+.....- . ..|
T Consensus 302 Ynt~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~ 381 (980)
T KOG0447|consen 302 YNTQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRH 381 (980)
T ss_pred ccccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHH
Confidence 334456779999999999999999988865321 0 000
Q ss_pred --------------CCCcceeEEEe--CC-EEEEEEEcCCCc-------------cchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 52 --------------TLHPTSEELSM--GD-IVFTTHDLGGHV-------------QARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 52 --------------t~~~~~~~~~~--~~-~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
|+.+..-.++. +| ....++|.||.- ...++...+.++.+++|+|+- .
T Consensus 382 e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ---D 458 (980)
T KOG0447|consen 382 EIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ---D 458 (980)
T ss_pred HHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec---c
Confidence 11111111122 23 467788999932 234556677889999999983 1
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcc
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGL 149 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~ 149 (194)
.|.+..+....++..+....+...|+|+||.|+.+ -.+++.+++.++-
T Consensus 459 GSVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 459 GSVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred CCcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHhc
Confidence 24566666777788888888999999999999977 3567788887753
|
|
| >COG1161 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1e-07 Score=73.90 Aligned_cols=63 Identities=22% Similarity=0.214 Sum_probs=47.5
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC-CEEEEEEEcCCCc
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG-DIVFTTHDLGGHV 76 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~ 76 (194)
..++..+..+++++|-|++||||+||+|.+.....+.+..|.|...-.+. +..+.++||||--
T Consensus 125 ~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 125 KKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred hcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 33345667899999999999999999999998877777667765433322 1348999999954
|
|
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=67.74 Aligned_cols=55 Identities=24% Similarity=0.368 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--------ccccCCCccee--EEEeCCEEEEEEEcCCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--------QHMPTLHPTSE--ELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--------~~~~t~~~~~~--~~~~~~~~~~~~d~~g~ 75 (194)
+..+++++|.+|+|||||+|++.+.... ...+..+.+.. .+..+. .+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN-GKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC-CCEEEeCcCC
Confidence 5578999999999999999999985431 11222223322 222232 5799999993
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >cd01856 YlqF YlqF | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-07 Score=66.58 Aligned_cols=57 Identities=18% Similarity=0.209 Sum_probs=40.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+++||||++|++.+..+..+.++.+.+. ..+.++ ..+.++||||.
T Consensus 112 ~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 3455789999999999999999999877654333333322 223333 56889999994
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes. |
| >KOG0465|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=75.05 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=78.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-c--------------------cccCCCcceeEEEeCCEEEEEEEcCCCccch
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--------------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~--------------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 79 (194)
--+|.+..+-.+||||+-++.....-- . ..-|+......+.....+++++||||+-++.
T Consensus 39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT 118 (721)
T KOG0465|consen 39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT 118 (721)
T ss_pred hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence 347888899999999999987764211 0 0001111223344556899999999999988
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
-.....++-.|+.|+|+|....- ..+....|.+... -+.|-+..+||+|....
T Consensus 119 ~EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~r----y~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 119 FEVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKR----YNVPRICFINKMDRMGA 171 (721)
T ss_pred EEehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHh----cCCCeEEEEehhhhcCC
Confidence 77777788899999998876532 3444555666644 37899999999997653
|
|
| >KOG1547|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-07 Score=65.30 Aligned_cols=123 Identities=15% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCCC----------cceeEEEeCC--EEEEEEEcCCCccc---hhhH
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTLH----------PTSEELSMGD--IVFTTHDLGGHVQA---RRVW 82 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~~----------~~~~~~~~~~--~~~~~~d~~g~~~~---~~~~ 82 (194)
=.++|+++|.+|.||||++|+++...... ..++.+ .....++.++ .++++.||||..+. ..+|
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW 124 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW 124 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence 46899999999999999999998765432 111111 1123445566 57899999995431 1111
Q ss_pred -----------hhh------------h--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 83 -----------RDY------------F--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 83 -----------~~~------------~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
.+| + ..+++++|.+..+.-+--.-..+.+..+.+ -.-++-|+-|.|-..-
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 111 1 246788888877653211222233334422 2456788899996553
Q ss_pred CCHHHHHhhh
Q psy2159 138 ASEDEVRHFF 147 (194)
Q Consensus 138 ~~~~e~~~~~ 147 (194)
.+..+.++.+
T Consensus 200 eEr~~FkqrI 209 (336)
T KOG1547|consen 200 EERSAFKQRI 209 (336)
T ss_pred HHHHHHHHHH
Confidence 3444444444
|
|
| >KOG1534|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.2e-07 Score=67.66 Aligned_cols=127 Identities=11% Similarity=0.097 Sum_probs=71.8
Q ss_pred EEEEEEEcCCCccchh---hHhhh---hhc---CCEEEEEEECCC-CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 65 IVFTTHDLGGHVQARR---VWRDY---FPA---VDAIVFIIDASD-RSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~---~~~~~---~~~---~d~ii~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
-.+.++|+|||-+... ..+++ ++. --+++|++|..- .++...+..-+..+.. ...-..|-|=|++|+|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsA-Mi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSA-MISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHH-HHHhcCcchhhhhHHHH
Confidence 4689999999987542 22222 222 246788887643 1122222222222211 11246889999999999
Q ss_pred CCCCCHHHHHhhhcccCccCC------Cc-cCcccc--------cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 135 FDAASEDEVRHFFGLYGLTTG------KE-FTPREI--------LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~~~e~~~~~~~~~~~~~------~~-~~~~~~--------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
..+...++++.++..-...-. ++ .++.+- ....-+.|++....+.++|+-++..|-..
T Consensus 177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~a 249 (273)
T KOG1534|consen 177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDA 249 (273)
T ss_pred hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHH
Confidence 988777788777755321111 00 011000 01123578888888888888887776543
|
|
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.5e-07 Score=64.29 Aligned_cols=55 Identities=22% Similarity=0.190 Sum_probs=39.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCcceeEEEeCCEEEEEEEcCCC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHPTSEELSMGDIVFTTHDLGGH 75 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~d~~g~ 75 (194)
.....+++++|.+|+||||++|++.+...... ..|..... +..+ ..+.++||||.
T Consensus 97 ~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtPG~ 155 (155)
T cd01849 97 LKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD-NKIKLLDTPGI 155 (155)
T ss_pred cccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec-CCEEEEECCCC
Confidence 35678899999999999999999998764332 22333322 2332 46899999983
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=65.86 Aligned_cols=84 Identities=13% Similarity=0.042 Sum_probs=55.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCC----ccccCCCcceeEEEe---CCEEEEEEEcCCCccchh------hHh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTA----QHMPTLHPTSEELSM---GDIVFTTHDLGGHVQARR------VWR 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~----~~~~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~------~~~ 83 (194)
.+-.-|.|+|++++|||+|+|++.+. .+. ....|.|.-...... .+..+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 44556678899999999999999998 554 123345554433333 357899999999764322 112
Q ss_pred hhhh--cCCEEEEEEECCCCC
Q psy2159 84 DYFP--AVDAIVFIIDASDRS 102 (194)
Q Consensus 84 ~~~~--~~d~ii~v~d~~~~~ 102 (194)
..+. -++.+||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 2233 378999988876533
|
Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein |
| >KOG0464|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1e-07 Score=74.51 Aligned_cols=120 Identities=18% Similarity=0.144 Sum_probs=85.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC-----c--ccc--------------CCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA-----Q--HMP--------------TLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~-----~--~~~--------------t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|.++.+-.+||||...++....-. . -.. |+.....+++..|.++.++||||+.+++-.
T Consensus 39 nigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~le 118 (753)
T KOG0464|consen 39 NIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRLE 118 (753)
T ss_pred cceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEEE
Confidence 7889999999999999998764321 0 011 222223456667899999999999999988
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCCHHHHHhhh
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AASEDEVRHFF 147 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~ 147 (194)
...+++-.|+++.|||.+-.- -.+....|.+. ...++|-+..+||+|+.. +...+.+++.+
T Consensus 119 verclrvldgavav~dasagv-e~qtltvwrqa----dk~~ip~~~finkmdk~~anfe~avdsi~ekl 182 (753)
T KOG0464|consen 119 VERCLRVLDGAVAVFDASAGV-EAQTLTVWRQA----DKFKIPAHCFINKMDKLAANFENAVDSIEEKL 182 (753)
T ss_pred HHHHHHHhcCeEEEEeccCCc-ccceeeeehhc----cccCCchhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 888899999999999987643 22223344444 236899999999999866 33344444444
|
|
| >TIGR03348 VI_IcmF type VI secretion protein IcmF | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-06 Score=75.79 Aligned_cols=110 Identities=17% Similarity=0.214 Sum_probs=66.5
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCcc-----ccC--CCcceeEEEe-CCEEEEEEEcCCCc--------cchhhHhhhh-
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQH-----MPT--LHPTSEELSM-GDIVFTTHDLGGHV--------QARRVWRDYF- 86 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~-----~~t--~~~~~~~~~~-~~~~~~~~d~~g~~--------~~~~~~~~~~- 86 (194)
.+++|++|+||||+++.- +..++-. ..+ ++.+. .++. =...-.++|++|.- .....|..++
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 568899999999999987 3444311 111 12121 1110 11244688999822 2234455544
Q ss_pred --------hcCCEEEEEEECCCCCC--h-------HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 87 --------PAVDAIVFIIDASDRSR--F-------PESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 87 --------~~~d~ii~v~d~~~~~~--~-------~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+++|+++|+.+.-. - ..++.++.++... .....|+.|++||+|+..
T Consensus 192 ~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 192 LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 34799999999876321 1 2334455555433 335799999999999876
|
Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems. |
| >KOG0448|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=66.05 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=72.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--cccc----------CCCcc-----------------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMP----------TLHPT----------------------------- 56 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~----------t~~~~----------------------------- 56 (194)
...+.||++.|...+||||++|++...+.- ...+ +.|..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 478899999999999999999999987542 1111 11110
Q ss_pred -----eeEEEeCC-------EEEEEEEcCCCc---cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCC
Q psy2159 57 -----SEELSMGD-------IVFTTHDLGGHV---QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 57 -----~~~~~~~~-------~~~~~~d~~g~~---~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~ 121 (194)
...+-.+. -.+.+.|.||.. +..+....+..++|++|+|.++.+ .+......+...... .
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEn--tlt~sek~Ff~~vs~---~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAEN--TLTLSEKQFFHKVSE---E 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCcc--HhHHHHHHHHHHhhc---c
Confidence 00111111 247788999966 345566777889999999998766 455554443333332 2
Q ss_pred CCcEEEEeeCCCCCC
Q psy2159 122 DVPILILGNKIDIFD 136 (194)
Q Consensus 122 ~~piiiv~nK~D~~~ 136 (194)
+..++|+.||-|...
T Consensus 261 KpniFIlnnkwDasa 275 (749)
T KOG0448|consen 261 KPNIFILNNKWDASA 275 (749)
T ss_pred CCcEEEEechhhhhc
Confidence 445556667879765
|
|
| >KOG0467|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=9.3e-07 Score=73.60 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=74.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC--c-------ccc------CCCccee--EEEe--CCEEEEEEEcCCCccchhhHh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA--Q-------HMP------TLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~--~-------~~~------t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++.++.+-..|||||+..|...... + ... |.|.+.+ .+.+ .++.+.++|+|||-++.+...
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 6778899999999999998865431 1 101 2233322 2223 568899999999999999888
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
...+-+|++++++|+.+.-- .+....+.+.. ..+...++|+||+|.
T Consensus 91 sas~l~d~alvlvdvvegv~-~qt~~vlrq~~----~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 91 SASRLSDGALVLVDVVEGVC-SQTYAVLRQAW----IEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhcCCcEEEEeeccccc-hhHHHHHHHHH----HccCceEEEEehhhh
Confidence 88889999999999876432 22222232221 246678999999994
|
|
| >cd03112 CobW_like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-06 Score=60.61 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++++|+.|+||||+++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 567899999999999998865
|
The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-06 Score=66.85 Aligned_cols=98 Identities=19% Similarity=0.375 Sum_probs=59.6
Q ss_pred cchhhHhhhhhcCC-EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccC
Q psy2159 77 QARRVWRDYFPAVD-AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTT 154 (194)
Q Consensus 77 ~~~~~~~~~~~~~d-~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~ 154 (194)
.+...... +...+ .+++|+|+.+.. ......+..+. .+.|+++|+||+|+.+ ....+++.+++....
T Consensus 58 ~~~~~l~~-i~~~~~lIv~VVD~~D~~--~s~~~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~--- 126 (365)
T PRK13796 58 DFLKLLNG-IGDSDALVVNVVDIFDFN--GSWIPGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQEA--- 126 (365)
T ss_pred HHHHHHHh-hcccCcEEEEEEECccCC--CchhHHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHHHH---
Confidence 34444444 34444 899999998733 11122233322 3679999999999965 333445554433211
Q ss_pred CCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.....++.+||+++.|++++++.+.+.
T Consensus 127 -------k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 127 -------KELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred -------HhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 0011122358999999999999999998654
|
|
| >PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.3e-05 Score=61.92 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 2 FEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
|+-+..++++..+=+ -.+-+.|+||-.+|||||+++|...
T Consensus 1 Me~~~iykDIa~RT~---GdIYiGVVGPVRTGKSTFIKRFMel 40 (492)
T PF09547_consen 1 MENFDIYKDIAERTG---GDIYIGVVGPVRTGKSTFIKRFMEL 40 (492)
T ss_pred CcchhHHHHHHHhcC---CceEEEeecCcccCchhHHHHHHHH
Confidence 344556666666554 3467899999999999999999864
|
It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.8e-07 Score=63.89 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=32.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCcccc---CCCc------ceeEEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMP---TLHP------TSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~---t~~~------~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..++++|++|||||||+|.|.+.....+.. ..+. ...-+.+++ ...+.||||..+
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~-g~~iIDTPGf~~ 99 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD-GGYIIDTPGFRS 99 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT-SEEEECSHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC-CcEEEECCCCCc
Confidence 577788999999999999999874322111 1000 122333322 347789999654
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.30 E-value=9.8e-07 Score=69.04 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=34.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCccc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
-++++|.+|+|||||+|+|.+.....+....+ .+ ..-+.+++ ...++||||-.++
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~ 270 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREF 270 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCcc
Confidence 36789999999999999999875443222111 11 11223322 1248999997654
|
|
| >KOG0463|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=5.4e-06 Score=64.30 Aligned_cols=164 Identities=20% Similarity=0.182 Sum_probs=95.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-------------------cccCCCcce----------------------e
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------------------HMPTLHPTS----------------------E 58 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-------------------~~~t~~~~~----------------------~ 58 (194)
-+.++.++|.-.+|||||+-.+...+... ...+++-++ .
T Consensus 132 ~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 132 IEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 45699999999999999998777653320 011111111 1
Q ss_pred EEEe-CCEEEEEEEcCCCccchhh--HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 59 ELSM-GDIVFTTHDLGGHVQARRV--WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 59 ~~~~-~~~~~~~~d~~g~~~~~~~--~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
.+-. ...-++++|..|++.|-.. +.+--+-.|.-.+.+-++-.- .-...+.+.-.+. ...|+++|++|+|..
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALa----L~VPVfvVVTKIDMC 286 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALA----LHVPVFVVVTKIDMC 286 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhh----hcCcEEEEEEeeccC
Confidence 1111 1245889999999987653 222223456666666543311 2222222222222 468999999999998
Q ss_pred CCCCHHHHHhhhcccCccCCCccCccc------------cc-CCcceEEEEeccccCCChHHHHHH
Q psy2159 136 DAASEDEVRHFFGLYGLTTGKEFTPRE------------IL-QMRPMELFMCSVLKRQGFGNGFRW 188 (194)
Q Consensus 136 ~~~~~~e~~~~~~~~~~~~~~~~~~~~------------~~-~~~~~~~~~~Sa~~~~~v~~l~~~ 188 (194)
+..-.+|-.+.+..+.....+++.... +. ..+..++|.+|-.+|.|++-+.-.
T Consensus 287 PANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmF 352 (641)
T KOG0463|consen 287 PANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMF 352 (641)
T ss_pred cHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHH
Confidence 876666655555444433333332211 11 334568999999999998766443
|
|
| >COG0523 Putative GTPases (G3E family) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=8.9e-06 Score=62.93 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=67.2
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCc-------cccCCCcc---------eeEEEe------------------------C
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTLHPT---------SEELSM------------------------G 63 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~~~~---------~~~~~~------------------------~ 63 (194)
.++.|.-||||||+++++....... -+..++.+ ....++ +
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 3455999999999999999764321 11111111 111111 1
Q ss_pred CEEEEEEEcCCCccchhhHhhhh--------hcCCEEEEEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYF--------PAVDAIVFIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~--------~~~d~ii~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
+....++.+.|...-......+. -..|+++.|+|+.+-..... ......+-+.. . =+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~---A---D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAF---A---DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHh---C---cEEEEecccC
Confidence 13355666766544322222221 13588999999987322111 22222222221 2 2999999999
Q ss_pred CCCCCHHHHHhhhcccC
Q psy2159 135 FDAASEDEVRHFFGLYG 151 (194)
Q Consensus 135 ~~~~~~~e~~~~~~~~~ 151 (194)
..+...+.++..+..+.
T Consensus 158 v~~~~l~~l~~~l~~ln 174 (323)
T COG0523 158 VDAEELEALEARLRKLN 174 (323)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 88655667777776544
|
|
| >TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.2e-06 Score=67.60 Aligned_cols=111 Identities=11% Similarity=0.116 Sum_probs=59.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-----CccccCCCcceeEEEeC-CEEEEEEEcCCCccchhhHhhh---------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-----AQHMPTLHPTSEELSMG-DIVFTTHDLGGHVQARRVWRDY--------- 85 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~~~~~~~~--------- 85 (194)
..++.++|.+|+|||||+|++.+... ....+..+.+.....+. +..+.++||||......+....
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~~~l~~~~l~~~~ 233 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMAHYLDKKDLKYIT 233 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhhhhcCHHHHhhcC
Confidence 35899999999999999999998542 12233333333322222 1346799999976543321111
Q ss_pred -hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 -FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 -~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
-+......+.++....-.+..+. ++ +++. ..+..+.+.++|.+...
T Consensus 234 ~~~~i~~~~~~l~~~q~~~~ggl~-~~-d~~~---~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 234 PKKEIKPKTYQLNPNQTLFLGGLA-RF-DYLK---GEKTSFTFYVSNELNIH 280 (360)
T ss_pred CCCccCceEEEeCCCCEEEEceEE-EE-EEec---CCceEEEEEccCCceeE
Confidence 12345666666654421111110 00 1111 13455677777777654
|
This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli. |
| >PRK11537 putative GTP-binding protein YjiA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=62.51 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=40.4
Q ss_pred EEEEEEcCCCccchhhHhhhhh--------cCCEEEEEEECCCCCChH-HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFP--------AVDAIVFIIDASDRSRFP-ESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~--------~~d~ii~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
...++.+.|...-......+.. ..++++.|+|+.+-.... .......++ .. .=+|++||.|+..
T Consensus 92 d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi-~~------AD~IvlnK~Dl~~ 164 (318)
T PRK11537 92 DRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQV-GY------ADRILLTKTDVAG 164 (318)
T ss_pred CEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHH-Hh------CCEEEEeccccCC
Confidence 3466777777654443333211 248899999987522111 101111122 11 2289999999876
Q ss_pred CCCHHHHHhhhcc
Q psy2159 137 AASEDEVRHFFGL 149 (194)
Q Consensus 137 ~~~~~e~~~~~~~ 149 (194)
+ .+++.+.+..
T Consensus 165 ~--~~~~~~~l~~ 175 (318)
T PRK11537 165 E--AEKLRERLAR 175 (318)
T ss_pred H--HHHHHHHHHH
Confidence 3 3556666544
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.2e-06 Score=63.99 Aligned_cols=84 Identities=15% Similarity=0.184 Sum_probs=55.3
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+.++|.+++|+++..+-....+..++.. +.. .+.|.+||+||+|+.++ .++..+.+.. .
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~-a~~---~~i~piIVLNK~DL~~~--~~~~~~~~~~--------------~- 168 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLAL-AWE---SGAEPVIVLTKADLCED--AEEKIAEVEA--------------L- 168 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHH-HHH---cCCCEEEEEEChhcCCC--HHHHHHHHHH--------------h-
Confidence 5789999999999643222233333333 333 56788999999999764 2222222221 1
Q ss_pred CcceEEEEeccccCCChHHHHHHHh
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
....+++.+|++++.|++++.+++.
T Consensus 169 ~~g~~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 169 APGVPVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred CCCCcEEEEECCCCccHHHHHHHhh
Confidence 1236789999999999999999875
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.9e-06 Score=64.44 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=38.8
Q ss_pred CEEEEEEEcCCCccchhh----Hhhh--------hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 64 DIVFTTHDLGGHVQARRV----WRDY--------FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~----~~~~--------~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
+..+.++||||....... ...+ ....+..++|+|++.. ...+. ....+.+. -.+.-+++||
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~-~a~~f~~~----~~~~giIlTK 268 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALS-QAKAFHEA----VGLTGIILTK 268 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHH-HHHHHHhh----CCCCEEEEEC
Confidence 467999999996532211 1111 1246788999999852 33333 23333221 1345799999
Q ss_pred CCCCC
Q psy2159 132 IDIFD 136 (194)
Q Consensus 132 ~D~~~ 136 (194)
.|...
T Consensus 269 lD~t~ 273 (318)
T PRK10416 269 LDGTA 273 (318)
T ss_pred CCCCC
Confidence 99644
|
|
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=66.74 Aligned_cols=54 Identities=20% Similarity=0.094 Sum_probs=34.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.++++|++|+|||||+|+|.+.....+.+..+ .+ ..-+.+++. ..++||||-..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g-~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNG-GLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCC-cEEEeCCCccc
Confidence 37888999999999999999765443332222 11 122333221 26889999654
|
|
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.1e-06 Score=66.85 Aligned_cols=56 Identities=18% Similarity=0.237 Sum_probs=36.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC-----CccccCCCcceeEEE--eCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT-----AQHMPTLHPTSEELS--MGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~-----~~~~~t~~~~~~~~~--~~~~~~~~~d~~g~~ 76 (194)
+..++.++|.+|||||||+|++.+... ..+.+..|.+..... +++ ...++||||..
T Consensus 159 ~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~-~~~l~DTPGi~ 221 (365)
T PRK13796 159 EGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDD-GSFLYDTPGII 221 (365)
T ss_pred CCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCC-CcEEEECCCcc
Confidence 345899999999999999999986431 112333333433332 322 24799999974
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=1.3e-05 Score=62.32 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=39.0
Q ss_pred CEEEEEEEcCCCccchh-h---Hhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR-V---WRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~-~---~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... . ...+ ....|.+++|+|+.... +.......+... -.+--+++||.|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~---d~~~~a~~f~~~----~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN---DAVEQAREFNEA----VGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch---hHHHHHHHHHhc----CCCCEEEEeeecCCC
Confidence 35689999999764322 1 1111 12478899999986632 323333333221 123578999999755
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-06 Score=63.61 Aligned_cols=52 Identities=21% Similarity=0.191 Sum_probs=34.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccc-----------cCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHM-----------PTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
..++++|++|+|||||+|++.+.....+. .|..... +.+++ -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCccc
Confidence 46778899999999999999986433211 1222222 22322 27899999754
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.1e-05 Score=59.65 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=65.4
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH--HHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED--EVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~--e~~~~~~~~~~~~~~~~~~ 160 (194)
+.-..+.|-.++|+.+.+|+--......+.-+.+. .++..+||+||+|+.++.... +....+...+
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~---~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~g--------- 141 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA---GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIG--------- 141 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH---cCCcEEEEEEccccCcchHHHHHHHHHHHHhCC---------
Confidence 33345578888889888887444444444444444 678889999999998865554 3444554444
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++.+|++++.+++++.+++...+
T Consensus 142 --------y~v~~~s~~~~~~~~~l~~~l~~~~ 166 (301)
T COG1162 142 --------YPVLFVSAKNGDGLEELAELLAGKI 166 (301)
T ss_pred --------eeEEEecCcCcccHHHHHHHhcCCe
Confidence 8999999999999999999886543
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.9e-05 Score=58.91 Aligned_cols=67 Identities=16% Similarity=0.088 Sum_probs=40.6
Q ss_pred CCEEEEEEEcCCCccchhhHh-------hhh-----hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 63 GDIVFTTHDLGGHVQARRVWR-------DYF-----PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~-------~~~-----~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
.+..+.++||||......... ... ..+|.+++|+|++. ..+.. .+...+.+.. .+--+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~-~~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNAL-EQAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHH-HHHHHHHhhC----CCCEEEEE
Confidence 346889999999764332211 111 23799999999975 23333 3334443321 24579999
Q ss_pred CCCCCC
Q psy2159 131 KIDIFD 136 (194)
Q Consensus 131 K~D~~~ 136 (194)
|.|...
T Consensus 226 KlDe~~ 231 (272)
T TIGR00064 226 KLDGTA 231 (272)
T ss_pred ccCCCC
Confidence 999755
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.5e-05 Score=61.14 Aligned_cols=66 Identities=14% Similarity=0.102 Sum_probs=38.6
Q ss_pred CEEEEEEEcCCCccchhhH----hhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVW----RDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~----~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|........ ..+ ....+-+++|+|+.... ........+.+ .-.+--+++||.|...
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq---~a~~~a~~F~~----~~~~~g~IlTKlD~~a 253 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ---AAEAQAKAFKD----SVDVGSVIITKLDGHA 253 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccCh---hHHHHHHHHHh----ccCCcEEEEECccCCC
Confidence 4688999999965433211 111 22468899999987532 22223333322 1235678899999643
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >cd03114 ArgK-like The function of this protein family is unkown | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.5e-05 Score=53.80 Aligned_cols=58 Identities=16% Similarity=0.173 Sum_probs=34.4
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
+..+.++||+|... .. ..++..+|.+++|..++-.+.+.-.+ ... ....=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~--~~-~~~~~~Ad~~ivv~tpe~~D~y~~~k---~~~------~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQ--SE-VDIASMADTTVVVMAPGAGDDIQAIK---AGI------MEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccCh--hh-hhHHHhCCEEEEEECCCchhHHHHhh---hhH------hhhcCEEEEeCCC
Confidence 45788899988542 22 34677889888887665222111111 111 1223389999988
|
The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems. |
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=4e-06 Score=63.49 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-.+++|++|+|||||+|+|....
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~ 188 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPEL 188 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchh
Confidence 56677999999999999999753
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.6e-05 Score=53.68 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=28.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
+.-.++++|+.|+|||||++.+.+.. .++.+.+.+++..+
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~~i 63 (177)
T cd03222 24 EGEVIGIVGPNGTGKTTAVKILAGQL--------IPNGDNDEWDGITP 63 (177)
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC--------CCCCcEEEECCEEE
Confidence 34466788999999999999999862 23445666666443
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.2e-05 Score=61.55 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=35.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccC-----CC--cc--eeEEEeCCEEEEEEEcCCCccc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPT-----LH--PT--SEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t-----~~--~~--~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
..++++|++|+|||||+|.+.+......... .+ .+ ...+...+ ...++|+||..++
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCcc
Confidence 5788999999999999999998654322110 11 11 12233321 2268999998654
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >KOG1424|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=64.94 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=45.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
..+.|.++|-|++||||+||.|.+.+...++.|.|-+.. ++.+.. .+-+.||||..
T Consensus 313 ~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~-~v~LCDCPGLV 370 (562)
T KOG1424|consen 313 DVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSP-SVCLCDCPGLV 370 (562)
T ss_pred ceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCC-CceecCCCCcc
Confidence 457889999999999999999999999888888887753 444443 56788999965
|
|
| >TIGR02475 CobW cobalamin biosynthesis protein CobW | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.4e-05 Score=58.89 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=44.3
Q ss_pred EEEEEEcCCCccchhhHhhhh-------hcCCEEEEEEECCCCCC--h--------------------HHHHHHHHHHHh
Q psy2159 66 VFTTHDLGGHVQARRVWRDYF-------PAVDAIVFIIDASDRSR--F--------------------PESKYELDNLLA 116 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~-------~~~d~ii~v~d~~~~~~--~--------------------~~~~~~~~~~~~ 116 (194)
...++.+.|...-..+...+. -..|+++.|+|+.+-.. + ......+..-+.
T Consensus 94 d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qi~ 173 (341)
T TIGR02475 94 DHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHETPLEELFEDQLA 173 (341)
T ss_pred CEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccchHHHHHHHHHH
Confidence 466778888665444433321 14688999999864210 0 001111111111
Q ss_pred CCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 117 DDALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 117 ~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
. .=+|++||+|+..+...+++++.+..
T Consensus 174 ~------AD~IvlnK~Dl~~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 174 C------ADLVILNKADLLDAAGLARVRAEIAA 200 (341)
T ss_pred h------CCEEEEeccccCCHHHHHHHHHHHHH
Confidence 1 23999999999876666666666654
|
A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683). |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.3e-06 Score=58.55 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=33.9
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
++..+++......++ ++||+|||||||++++.+-+ .++.+.+.++|.
T Consensus 17 VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE--------~~~~G~I~i~g~ 64 (240)
T COG1126 17 VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE--------EPDSGSITVDGE 64 (240)
T ss_pred EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc--------CCCCceEEECCE
Confidence 455666666555555 67999999999999999873 345566666663
|
|
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.9e-05 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.116 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCC-------cc--eeEEEeCCEEEEEEEcCCCcc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLH-------PT--SEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~-------~~--~~~~~~~~~~~~~~d~~g~~~ 77 (194)
...++++|++|+|||||+|++.+........... .+ ...+..++ ...++||||...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 3467789999999999999998765432211110 11 12222322 237889999763
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=6.5e-06 Score=59.21 Aligned_cols=35 Identities=34% Similarity=0.536 Sum_probs=28.9
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.++..+++.-++..++ ++||.|+|||||++.+++.
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe 50 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE 50 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence 3566677777777777 7799999999999999987
|
|
| >KOG2423|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=62.94 Aligned_cols=70 Identities=21% Similarity=0.234 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCCc
Q psy2159 5 WTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~ 76 (194)
++.+|++.. +-..++++.+.++|-|++||||+||+|..++.+.+.|..|.+. ..+.+- ..+-++|+||..
T Consensus 292 I~llRQf~k-Lh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLm-krIfLIDcPGvV 363 (572)
T KOG2423|consen 292 IQLLRQFAK-LHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLM-KRIFLIDCPGVV 363 (572)
T ss_pred HHHHHHHHh-hccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHH-hceeEecCCCcc
Confidence 344444432 2246789999999999999999999999999998888777652 222222 467788999954
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1e-05 Score=59.54 Aligned_cols=37 Identities=27% Similarity=0.461 Sum_probs=29.5
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTA 47 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~ 47 (194)
+++.+++......++ ++|++|||||||++.+.+-..+
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p 55 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP 55 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456667777666666 7799999999999999987544
|
|
| >PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1) | Back alignment and domain information |
|---|
Probab=97.90 E-value=9.8e-05 Score=41.68 Aligned_cols=48 Identities=29% Similarity=0.472 Sum_probs=29.9
Q ss_pred hhhhcCCEEEEEEECCCCCCh--HHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 84 DYFPAVDAIVFIIDASDRSRF--PESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
...+-.++++|++|++....+ ++....+.++... +.++|+++|+||+|
T Consensus 9 AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~--F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 9 ALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPL--FPNKPVIVVLNKID 58 (58)
T ss_dssp GGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHH--TTTS-EEEEE--TT
T ss_pred HHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHH--cCCCCEEEEEeccC
Confidence 334567999999999886654 4444556666444 35899999999998
|
The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.2e-05 Score=54.64 Aligned_cols=66 Identities=12% Similarity=0.101 Sum_probs=39.2
Q ss_pred CEEEEEEEcCCCccchh----hHhhhh--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.+.|++|...... ....+. ...+.+++|+|.... .........+.+.. + ..-++.||.|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~---~~~~~~~~~~~~~~---~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG---QDAVNQAKAFNEAL---G-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCC---hHHHHHHHHHHhhC---C-CCEEEEECCcCCC
Confidence 35688899999753221 111111 248999999998643 23334455553332 2 3567779999755
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.6e-05 Score=58.31 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...++++|++|+||||++..+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999998875
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00044 Score=48.93 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=19.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++++++|++|+|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998653
|
|
| >cd03110 Fer4_NifH_child This protein family's function is unkown | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=46.99 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=52.3
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
+.+.+.++|+|+.... .....+..+|.+++++..+.. +.......+..+.. .+.|+.+++||+|.... ..++
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~-~~~~ 162 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRH----FGIPVGVVINKYDLNDE-IAEE 162 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc-hHHH
Confidence 4568999999966422 234456789999999987743 46666555554432 35678999999997543 3445
Q ss_pred HHhhhcc
Q psy2159 143 VRHFFGL 149 (194)
Q Consensus 143 ~~~~~~~ 149 (194)
+.+.++.
T Consensus 163 ~~~~~~~ 169 (179)
T cd03110 163 IEDYCEE 169 (179)
T ss_pred HHHHHHH
Confidence 5555544
|
It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.84 E-value=2.3e-05 Score=60.80 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=26.2
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++......++ ++||+||||||+++.+.+-
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555565565555 6699999999999999997
|
|
| >KOG2484|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.7e-05 Score=61.85 Aligned_cols=57 Identities=23% Similarity=0.238 Sum_probs=47.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~ 76 (194)
++++++.|+|-|++||||+||+|...+...+.++.|.+.. .+.++ ..+.+.|.||.-
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~Ld-k~i~llDsPgiv 308 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKLD-KKIRLLDSPGIV 308 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheecc-CCceeccCCcee
Confidence 6788999999999999999999999998888887777653 33333 578999999944
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00042 Score=57.16 Aligned_cols=39 Identities=23% Similarity=0.327 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCcCCCCeEEEE-cCCCCChHHHHHHHHcC
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFL-GLDNAGKTFLLQMLKND 44 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~-G~~~~GKStli~~~~~~ 44 (194)
..++.+++..-......+|+++ ||+||||||.++.+...
T Consensus 29 ~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 29 EEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 3456666654444555667765 99999999999999875
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.2e-05 Score=56.60 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..++..++ ++||+|||||||+|.+..-
T Consensus 20 ~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 20 ALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 455566666666555 7799999999999999876
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.4e-05 Score=54.42 Aligned_cols=36 Identities=36% Similarity=0.479 Sum_probs=28.2
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+..++..++...+...+ ++|++|||||||+|.+.+-
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf 54 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGF 54 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcC
Confidence 34667777776666555 5699999999999999886
|
|
| >cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0004 Score=43.60 Aligned_cols=97 Identities=13% Similarity=0.059 Sum_probs=56.1
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhh-HhhhhhcCCEEEEEEECCCCC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~ 102 (194)
+++.|.+|+||||+...+...-.. .+. ...-.+ .+.++|+++....... .......+|.++++++.+...
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~--~v~~~~--d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~ 72 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGK--RVLLID--DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALA 72 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCC--eEEEEC--CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhh
Confidence 567799999999999987764111 111 112222 7889999987643331 134466789999998876643
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
....................+..++.|
T Consensus 73 -~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 73 -VLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred -HHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 444333332232232334455555554
|
Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. |
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00039 Score=57.09 Aligned_cols=110 Identities=19% Similarity=0.190 Sum_probs=60.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC--------CCC-ccccC---------------CCcceeEE-----------EeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND--------RTA-QHMPT---------------LHPTSEEL-----------SMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~--------~~~-~~~~t---------------~~~~~~~~-----------~~~~ 64 (194)
..-.++++|++|+||||++..|... +.. ....+ .+...... .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 4456778899999999999887742 110 00001 11111111 1124
Q ss_pred EEEEEEEcCCCccchhhHh----hhh-hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWR----DYF-PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~----~~~-~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.++||+|......... .+. ......++|++... +.......+..+.. ..+.-+|+||.|...
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~ 498 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG 498 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc
Confidence 6789999999653322111 110 11234667777654 34455544544422 246679999999754
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=56.77 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=28.7
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
..++.+++..++-+|. ++||+|||||||++++.+.
T Consensus 21 ~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRm 56 (253)
T COG1117 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRM 56 (253)
T ss_pred hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhh
Confidence 4667777777777776 7799999999999998875
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.7e-05 Score=59.24 Aligned_cols=34 Identities=29% Similarity=0.425 Sum_probs=27.3
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..+..++. ++||.|||||||++++.+-
T Consensus 17 il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 455666666666666 7799999999999999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.2e-05 Score=54.19 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=34.0
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
-++.++...++..++ ++||+|+|||||++.+... ..++.+.+.+++..
T Consensus 17 aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~--------e~pt~G~i~~~~~d 65 (223)
T COG2884 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGE--------ERPTRGKILVNGHD 65 (223)
T ss_pred hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhh--------hcCCCceEEECCee
Confidence 345555666667777 4599999999999999987 34555666665543
|
|
| >COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.9e-05 Score=66.94 Aligned_cols=111 Identities=16% Similarity=0.187 Sum_probs=63.7
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEE-eCCEEEEEEEcCCCc--------cchhhHhhh----
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELS-MGDIVFTTHDLGGHV--------QARRVWRDY---- 85 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~-~~~~~~~~~d~~g~~--------~~~~~~~~~---- 85 (194)
.+|+|++|+||||++.... .+|+.... +.++....++ .-+-.-.++||.|-. ...+.|..+
T Consensus 128 y~viG~pgsGKTtal~~sg-l~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSG-LQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhccc-ccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 4688999999999988543 33331111 1111111111 111345666887722 233455544
Q ss_pred -----hhcCCEEEEEEECCCCCC---------hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 86 -----FPAVDAIVFIIDASDRSR---------FPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 -----~~~~d~ii~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+..++||+.+|+++.-+ -..++..+.++.+. -....|+++++||.|+.+
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEecccccc
Confidence 245799999999876222 12233445555432 225689999999999876
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.4e-05 Score=61.07 Aligned_cols=38 Identities=34% Similarity=0.335 Sum_probs=27.1
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.++.......+...+++.|++|+||||+++.+.+.
T Consensus 25 ~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 25 QLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444333344567778899999999999999875
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.8e-05 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+|+++|++|||||||.+.+...
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999998754
|
|
| >KOG3859|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=9.3e-05 Score=55.38 Aligned_cols=55 Identities=20% Similarity=0.339 Sum_probs=40.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc-----cccCCCcceeEEEe--CC--EEEEEEEcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ-----HMPTLHPTSEELSM--GD--IVFTTHDLGGH 75 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~-----~~~t~~~~~~~~~~--~~--~~~~~~d~~g~ 75 (194)
.++|+.+|..|.|||||+..+++-++.. ..|++.....+.++ ++ .++++.||.|.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGf 105 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGF 105 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeeccc
Confidence 4789999999999999999999988752 23333333333333 33 68999999983
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.2e-05 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999975
|
... |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00056 Score=54.28 Aligned_cols=110 Identities=15% Similarity=0.040 Sum_probs=60.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC------CC-cccc---------------CCCcceeEE-------------E-eC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR------TA-QHMP---------------TLHPTSEEL-------------S-MG 63 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~------~~-~~~~---------------t~~~~~~~~-------------~-~~ 63 (194)
.+..|+++|++||||||++..+...- .. .... ..+...... . ..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~ 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhcc
Confidence 34578899999999999999887421 10 0000 111111100 0 01
Q ss_pred CEEEEEEEcCCCccchh----hHhhhh--hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~~--~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... .....+ ...+.+++|+|++.. .......+..+.. -..-=+++||.|...
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCC
Confidence 35789999999754221 112222 235778888887542 3444444545421 123358899999755
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.7e-05 Score=59.94 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=27.5
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
+..+++..++..++ ++||+||||||+++.+.+-..
T Consensus 21 v~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34556666676666 889999999999999998743
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=8e-05 Score=51.84 Aligned_cols=50 Identities=22% Similarity=0.305 Sum_probs=35.2
Q ss_pred HHHHhCCcCCC-CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEE
Q psy2159 11 VLLRLGLWKKS-GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 11 ~~~~~~~~~~~-~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 68 (194)
+++.+++.... -.+.+.||+|||||||++.++.- +.++.+.+.+.|..+.
T Consensus 18 il~~isl~v~~Ge~iaitGPSG~GKStllk~va~L--------isp~~G~l~f~Ge~vs 68 (223)
T COG4619 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASL--------ISPTSGTLLFEGEDVS 68 (223)
T ss_pred eecceeeeecCCceEEEeCCCCccHHHHHHHHHhc--------cCCCCceEEEcCcccc
Confidence 45556655433 35678899999999999999987 4456666666664443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=52.15 Aligned_cols=76 Identities=11% Similarity=0.080 Sum_probs=42.4
Q ss_pred CEEEEEEEcCCCccch----hhHhhhhh---cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQAR----RVWRDYFP---AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~----~~~~~~~~---~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|..... .....++. ...-+.+|++.+. ....+...+..+.. .+ +-=+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~--~~~~l~~~~~~f~~----~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATT--KYEDLKDIYKHFSR----LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCC--CHHHHHHHHHHhCC----CC-CCEEEEecccccc
Confidence 4678999999976432 12222333 2346677888765 33444444444421 11 2358899999755
Q ss_pred CCCHHHHHhhhc
Q psy2159 137 AASEDEVRHFFG 148 (194)
Q Consensus 137 ~~~~~e~~~~~~ 148 (194)
. .-.+...+.
T Consensus 372 ~--~G~i~~~~~ 381 (424)
T PRK05703 372 S--LGSILSLLI 381 (424)
T ss_pred c--ccHHHHHHH
Confidence 3 224444443
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.66 E-value=2e-05 Score=45.57 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
..++.|+.||||||++..+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 577889999999999987664
|
|
| >cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00098 Score=45.36 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC------CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 26 FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
.-|.+|+||||+.-.+...-... +....-++.+ ...+.++|+|+... ......+..+|.++++.+.+
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~-----~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~ 77 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKL-----GKRVLLLDADLGLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE 77 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEECCCCCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC
Confidence 33899999999987666431110 1111111111 16789999997542 33345688899999999875
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
.. ++......+..+.... ...++.+++|+.+.
T Consensus 78 ~~-s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 78 PT-SITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred hh-HHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 43 3555445454543322 45678899999974
|
It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. |
| >KOG1533|consensus | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.7e-05 Score=55.09 Aligned_cols=69 Identities=19% Similarity=0.180 Sum_probs=35.8
Q ss_pred EEEEEEEcCCCccchh---h---HhhhhhcCCEEEEEEECC------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 65 IVFTTHDLGGHVQARR---V---WRDYFPAVDAIVFIIDAS------DRSRFPESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~---~---~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
..+.++|+|||.+... . ....++..|.=+.++.+. +|..|-.. .+..+... -.-..|=+=|+.|+
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~--lL~sl~tM-l~melphVNvlSK~ 173 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISS--LLVSLATM-LHMELPHVNVLSKA 173 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHH--HHHHHHHH-HhhcccchhhhhHh
Confidence 5689999999987432 1 111233355444444433 33333222 22222111 11356778889999
Q ss_pred CCCC
Q psy2159 133 DIFD 136 (194)
Q Consensus 133 D~~~ 136 (194)
|+..
T Consensus 174 Dl~~ 177 (290)
T KOG1533|consen 174 DLLK 177 (290)
T ss_pred HHHH
Confidence 9754
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.63 E-value=8.7e-05 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++|+.|||||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 35668899999999999999987
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=4.8e-05 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=20.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+|+|++||||||+.+.+...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999865
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.62 E-value=5.4e-05 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+|+++|+|||||||+.+.+...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=97.61 E-value=7.9e-05 Score=53.48 Aligned_cols=48 Identities=31% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
++..+++...+.. ++++|+.|||||||++.+.+.. .++.+.+.+++..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~--------~~~~G~i~~~g~~ 55 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL--------RPQSGAVLIDGEP 55 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCceeEEECCEE
Confidence 4555665555554 5577999999999999999862 2334555555543
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.61 E-value=8.2e-05 Score=54.44 Aligned_cols=45 Identities=31% Similarity=0.480 Sum_probs=31.1
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
+..+++..++...+ ++|++|+|||||++++.+- .+++.+.+.+++
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl--------~d~t~G~i~~~g 65 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGL--------VDPTSGEILFNG 65 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcc--------cCCCcceEEecc
Confidence 34455556666555 7799999999999999984 444444555544
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00083 Score=45.28 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~ 42 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANE 42 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4557888899999999999999876
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=52.74 Aligned_cols=51 Identities=29% Similarity=0.487 Sum_probs=37.6
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
+..+..+++..+...++ |+|..|+|||||+|.+.+. ..++.+.+.+++..+
T Consensus 19 k~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~--------l~~t~G~I~Idg~dV 70 (263)
T COG1101 19 KRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGD--------LKPTSGQILIDGVDV 70 (263)
T ss_pred HHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCc--------cccCCceEEECceec
Confidence 34667777777777766 6699999999999999987 445556666655443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=3.8e-05 Score=56.29 Aligned_cols=36 Identities=28% Similarity=0.374 Sum_probs=29.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
++..+++..+..+++ ++|++|+|||||++.+.+.-.
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~ 59 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR 59 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC
Confidence 556677777777877 779999999999999998733
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.58 E-value=4.6e-05 Score=57.86 Aligned_cols=60 Identities=23% Similarity=0.275 Sum_probs=42.3
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
...++..+...|. ++|.+|+|||||++++..- ..|+.+.+.++|..+.-.+-.+....++
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L--------e~PtsG~v~v~G~di~~l~~~~Lr~~R~ 83 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL--------ERPTSGSVFVDGQDLTALSEAELRQLRQ 83 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc--------CCCCCceEEEcCEecccCChHHHHHHHh
Confidence 3445555555555 9999999999999999887 4466788888886666655555444444
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=97.57 E-value=5.8e-05 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578899999999999999986
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00055 Score=47.52 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=18.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++|.|++|+||||++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 457799999999999998864
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00052 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=18.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.-.++++|+.||||||++..+..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 33456889999999999998874
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.9e-05 Score=54.71 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=35.2
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEE
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d 71 (194)
...+++..+...++ ++|++||||||+++.+.+- +.++.+.+.++|..+.-+|
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrL--------iept~G~I~i~g~~i~~~d 69 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRL--------IEPTSGEILIDGEDISDLD 69 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcc--------cCCCCceEEECCeecccCC
Confidence 34455555566665 6699999999999988876 4556666666665444433
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00069 Score=50.79 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++|.|||||||+.+.+...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999999988753
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00046 Score=55.40 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..-.++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999997765
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=53.70 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=26.5
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666655554 558899999999999999986
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.9e-05 Score=53.85 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=26.3
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4555665555555 458899999999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >KOG2485|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=53.48 Aligned_cols=71 Identities=21% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHHHHHHhCC-cCCCCeEEEEcCCCCChHHHHHHHHcCC-----CCccccCCCccee---EEEeC-CEEEEEEEcCCC
Q psy2159 6 TKFREVLLRLGL-WKKSGKLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSE---ELSMG-DIVFTTHDLGGH 75 (194)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~~~~~~-----~~~~~~t~~~~~~---~~~~~-~~~~~~~d~~g~ 75 (194)
.++..-+.+... ...+.++.|+|-||+|||||+|++.... ...+.+..|.+.. .+.+. .-.+.+.||||.
T Consensus 127 ~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 127 TILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred HHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 344554444443 4578899999999999999999776543 3345555555542 23333 246888899994
Q ss_pred c
Q psy2159 76 V 76 (194)
Q Consensus 76 ~ 76 (194)
-
T Consensus 207 l 207 (335)
T KOG2485|consen 207 L 207 (335)
T ss_pred C
Confidence 3
|
|
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.53 E-value=8e-05 Score=50.71 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.5
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++|+|||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999999854
|
... |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00018 Score=52.78 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 455556555555 4558899999999999999986
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=53.31 Aligned_cols=36 Identities=25% Similarity=0.427 Sum_probs=31.0
Q ss_pred HHHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+.++..+++..+...+. ++||.|||||||.+.+.+.
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~ 53 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGH 53 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35777788888888888 5699999999999999987
|
|
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=51.28 Aligned_cols=108 Identities=17% Similarity=0.193 Sum_probs=60.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-----C----ccccCC---------------CcceeEE-----------EeCCE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-----A----QHMPTL---------------HPTSEEL-----------SMGDI 65 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-----~----~~~~t~---------------~~~~~~~-----------~~~~~ 65 (194)
...++++||.|+||||.+-.|..... . .+..|- +.....+ .+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55666889999999999887664322 0 011111 1111111 12336
Q ss_pred EEEEEEcCCCccchhh----Hhhhhhc--CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARRV----WRDYFPA--VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~----~~~~~~~--~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~ 136 (194)
.+.++||.|....... ...++.. ..-+-+|++++. ....+...+..+. ..|+ =+++||.|...
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~--K~~dlkei~~~f~------~~~i~~~I~TKlDET~ 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT--KYEDLKEIIKQFS------LFPIDGLIFTKLDETT 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc--chHHHHHHHHHhc------cCCcceeEEEcccccC
Confidence 7999999997754432 2222222 234555677665 3456566565553 2333 47889999655
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00011 Score=53.66 Aligned_cols=33 Identities=33% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++..++++|+.|+|||||++.+.+.
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC
Confidence 444554443347789999999999999999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=49.41 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=29.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
-+.++|++|||||||++++...- ...+.....+...+..+.+ |.+|.+
T Consensus 8 ii~ivG~sgsGKTTLi~~li~~l-----~~~g~~vg~Ik~~~~~~~~-d~~g~D 55 (173)
T PRK10751 8 LLAIAAWSGTGKTTLLKKLIPAL-----CARGIRPGLIKHTHHDMDV-DKPGKD 55 (173)
T ss_pred EEEEECCCCChHHHHHHHHHHHH-----hhcCCeEEEEEEcCCCccc-CCCCcH
Confidence 46688999999999999998651 1122233555554433333 666643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0002 Score=53.18 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=25.2
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455555555 4558899999999999999986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00019 Score=52.61 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++..++. .++++|+.|||||||++.+.+.
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344555555444 4568899999999999999986
|
|
| >cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0023 Score=41.40 Aligned_cols=100 Identities=16% Similarity=0.124 Sum_probs=57.4
Q ss_pred EEE-cCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC
Q psy2159 25 LFL-GLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 25 ~v~-G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
.++ +.+|+||||+...+...-.... +....-++.+ +..+.++|+|+.... .....+..+|.++++++.+.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~~~~~----~~~~~l~d~d~~~~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVALAKEA----GRRVLLVDLDLQFGDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHHHhcC----CCcEEEEECCCCCCCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCCh
Confidence 344 7789999998776654311100 1111111111 127899999986533 23446778999999987655
Q ss_pred CCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 101 RSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
. +.......+..+.+....+...+.+|+|+
T Consensus 77 ~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 3 45555555555544322114567788875
|
The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=53.78 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=29.3
Q ss_pred HHHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCC
Q psy2159 10 EVLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~ 46 (194)
..++.+++...+..++ ++|++|||||||.+.+.+..-
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 4666777776565555 899999999999999998744
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00089 Score=54.14 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
++..++++|++|+||||++..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~ 117 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLAR 117 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 355677889999999999987764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00021 Score=51.92 Aligned_cols=34 Identities=32% Similarity=0.355 Sum_probs=25.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 455555555444 4568899999999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd04178 Nucleostemin_like Nucleostemin-like | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=50.29 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=28.5
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|++++|+|+.++.+... ..+.+.+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988643222 12222311 0114689999999999965
|
Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=53.32 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=26.4
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455666665555 4558899999999999999986
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00012 Score=53.74 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=26.8
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 4556666655554 558899999999999999986
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=54.48 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 556666665555 4558899999999999999986
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00015 Score=51.20 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
.+.++|++|+|||||+|.+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 455889999999999999998643
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00014 Score=55.94 Aligned_cols=34 Identities=32% Similarity=0.480 Sum_probs=27.6
Q ss_pred HHHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..++..+. ++|+.||||||+++.+.+.
T Consensus 20 ~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl 54 (293)
T COG1131 20 ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL 54 (293)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 455666677777655 8899999999999999987
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00026 Score=51.75 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++...+. .++++|+.|||||||++.+.+.
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445555555555 4568899999999999999986
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00014 Score=53.71 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=26.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 456666666555 4558899999999999999986
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00074 Score=54.52 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=35.9
Q ss_pred CEEEEEEEcCCCccchh----hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.++||+|...... ....+ .-..+.+++|+|... -.+.......+.+. . ...=+|+||.|..
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~---gq~av~~a~~F~~~---~-~i~giIlTKlD~~ 253 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT---GQDAVNTAKAFNEA---L-GLTGVILTKLDGD 253 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc---HHHHHHHHHHHHhh---C-CCCEEEEeCccCc
Confidence 35689999999543221 11111 124678899999754 23444444444321 1 1234667898853
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00027 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555554 558899999999999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00024 Score=52.19 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=25.4
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3445555555554 558899999999999999886
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=43.41 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.|++||||||+.+.+...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 678899999999999998875
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=52.54 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=26.3
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 455566555555 4558899999999999999986
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00017 Score=56.73 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=57.0
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+++..+...++ ++|..|||||||+..+++-.. |..+.+-.+| .-+|-...++|+.++...+.+.+.+=
T Consensus 342 iNl~ikrGelvFliG~NGsGKST~~~LLtGL~~--------PqsG~I~ldg---~pV~~e~ledYR~LfSavFsDyhLF~ 410 (546)
T COG4615 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ--------PQSGEILLDG---KPVSAEQLEDYRKLFSAVFSDYHLFD 410 (546)
T ss_pred eeeEEecCcEEEEECCCCCcHHHHHHHHhcccC--------CCCCceeECC---ccCCCCCHHHHHHHHHHHhhhHhhhH
Confidence 44555666677 559999999999999998733 4445566665 22334445567777777666554443
Q ss_pred EEEECCCCCChHHHHHHHHHHH
Q psy2159 94 FIIDASDRSRFPESKYELDNLL 115 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~ 115 (194)
-.+......+...+..|+..+-
T Consensus 411 ~ll~~e~~as~q~i~~~LqrLe 432 (546)
T COG4615 411 QLLGPEGKASPQLIEKWLQRLE 432 (546)
T ss_pred hhhCCccCCChHHHHHHHHHHH
Confidence 3444444455666666666654
|
|
| >KOG0734|consensus | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=54.00 Aligned_cols=117 Identities=24% Similarity=0.320 Sum_probs=67.1
Q ss_pred cHHHHHHH--HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 3 EIWTKFRE--VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 3 ~~~~~~~~--~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
+|..|+++ -+.++| .+-+.-|+++||||.|||-|.+.+.+..-...+..-|.....+.. -.|..+.+.
T Consensus 318 EiVefLkdP~kftrLG-GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~V---------GvGArRVRd 387 (752)
T KOG0734|consen 318 EIVEFLKDPTKFTRLG-GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFV---------GVGARRVRD 387 (752)
T ss_pred HHHHHhcCcHHhhhcc-CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhh---------cccHHHHHH
Confidence 35556665 455565 567778999999999999999999986333222222222221111 134556666
Q ss_pred hHhhhhhcCCEEEEE--EECCC----CCChHHHHHHHHHHHhC--CCCCCCcEEEEe
Q psy2159 81 VWRDYFPAVDAIVFI--IDASD----RSRFPESKYELDNLLAD--DALTDVPILILG 129 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v--~d~~~----~~~~~~~~~~~~~~~~~--~~~~~~piiiv~ 129 (194)
++...-..+=+|||+ +|+-. +......++.+.+++.. -..++-++||++
T Consensus 388 LF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvig 444 (752)
T KOG0734|consen 388 LFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIG 444 (752)
T ss_pred HHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEe
Confidence 777666677777775 22211 22232344556666543 233456777666
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0003 Score=51.08 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.8
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34445444444 5568899999999999999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00027 Score=52.37 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455556555555 4558899999999999999986
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00022 Score=50.89 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=25.2
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..++...++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44455454444 5568899999999999999987
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00016 Score=52.67 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=33.6
Q ss_pred HHHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 12 LLRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 12 ~~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
++.+++.-+...|+ ++|+.|+||||+++++.+. ..+..+.+.++|..
T Consensus 19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl--------~~~~~G~I~~~G~d 66 (237)
T COG0410 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL--------VRPRSGRIIFDGED 66 (237)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC--------CCCCCeeEEECCee
Confidence 44555666666666 7799999999999999987 33445666666544
|
|
| >KOG0469|consensus | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00074 Score=54.67 Aligned_cols=129 Identities=16% Similarity=0.156 Sum_probs=82.3
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---------ccccC------CCcceeE--------------------E
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---------QHMPT------LHPTSEE--------------------L 60 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---------~~~~t------~~~~~~~--------------------~ 60 (194)
+...+--++-++.+-..|||||..+|..+.-- ++..| .+.+++. -
T Consensus 14 ~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~ 93 (842)
T KOG0469|consen 14 DKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEG 93 (842)
T ss_pred ccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCC
Confidence 33344446778889999999999998865211 11111 1111111 1
Q ss_pred EeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--C-C
Q psy2159 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--D-A 137 (194)
Q Consensus 61 ~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--~-~ 137 (194)
+.++..++++|.||+.++.+.....++--|+.+.|+|.-+.--. +....+.+.+. ..+..+++.||+|.. + .
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCV-QTETVLrQA~~----ERIkPvlv~NK~DRAlLELq 168 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCV-QTETVLRQAIA----ERIKPVLVMNKMDRALLELQ 168 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEe-chHHHHHHHHH----hhccceEEeehhhHHHHhhc
Confidence 12347899999999999999888889999999999998663322 22333444443 244557889999942 2 5
Q ss_pred CCHHHHHhhhcc
Q psy2159 138 ASEDEVRHFFGL 149 (194)
Q Consensus 138 ~~~~e~~~~~~~ 149 (194)
.+.+++.+.++.
T Consensus 169 ~~~EeLyqtf~R 180 (842)
T KOG0469|consen 169 LSQEELYQTFQR 180 (842)
T ss_pred CCHHHHHHHHHH
Confidence 566666655543
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00069 Score=46.43 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=29.3
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.++...++.. ++++|+.|+|||||++.+.+.. .+..+.+.+++
T Consensus 18 ~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~--------~~~~G~i~~~~ 61 (144)
T cd03221 18 DISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL--------EPDEGIVTWGS 61 (144)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC--------CCCceEEEECC
Confidence 3344444444 4588999999999999999863 23445566655
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0015 Score=45.29 Aligned_cols=31 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred HhCCcCCC-CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKS-GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~-~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++...++ -.++++|+.|+|||||++.+.+.
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~ 48 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGL 48 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33434333 45668899999999999999986
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00034 Score=48.97 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34444444444 4558899999999999999986
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0003 Score=52.09 Aligned_cols=34 Identities=32% Similarity=0.334 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.++...++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554444 4558899999999999999986
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0024 Score=48.80 Aligned_cols=125 Identities=15% Similarity=0.180 Sum_probs=71.7
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccch----------------
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------------- 79 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------------- 79 (194)
+...+-.+++++|++|.|||+++++|.....+... ... ....+....+|......
T Consensus 56 P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d----~~~-----~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~ 126 (302)
T PF05621_consen 56 PKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSD----EDA-----ERIPVVYVQMPPEPDERRFYSAILEALGAPYRP 126 (302)
T ss_pred CcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCC----CCC-----ccccEEEEecCCCCChHHHHHHHHHHhCcccCC
Confidence 34456678999999999999999999986432211 111 11244444554432211
Q ss_pred --------hhHhhhhhcCCEEEEEEECCC---CCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhc
Q psy2159 80 --------RVWRDYFPAVDAIVFIIDASD---RSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFG 148 (194)
Q Consensus 80 --------~~~~~~~~~~d~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~ 148 (194)
......++....=++++|--+ ..+....+..+..+....+.-++|++.+|++-=..--....++...++
T Consensus 127 ~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~ 206 (302)
T PF05621_consen 127 RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFE 206 (302)
T ss_pred CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccC
Confidence 112234667788888998543 223444455555554445557899999998533211122245555554
Q ss_pred c
Q psy2159 149 L 149 (194)
Q Consensus 149 ~ 149 (194)
.
T Consensus 207 ~ 207 (302)
T PF05621_consen 207 P 207 (302)
T ss_pred C
Confidence 4
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=51.43 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++.. ++++|+.|||||||++.+.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3455555554544 558899999999999999986
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00032 Score=54.95 Aligned_cols=39 Identities=26% Similarity=0.331 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++...... ..+..=++++||||+|||||.+++...
T Consensus 63 lv~~l~~~a~g~--~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 63 FVNYFKSAAQGL--EERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred HHHHHHHHHhcC--CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 455666655322 333334567799999999999999864
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=51.29 Aligned_cols=34 Identities=38% Similarity=0.460 Sum_probs=25.5
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++...+. .++++|+.|+|||||++.+.+.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 344555554444 5558899999999999999986
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00033 Score=53.07 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=32.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d 71 (194)
.+++++|++|+|||||++.+.+. ..+..+.+.+++..+..+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~--------~~~~~G~i~~~g~~v~~~d 153 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARI--------LSTGISQLGLRGKKVGIVD 153 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCc--------cCCCCceEEECCEEeecch
Confidence 58899999999999999999987 3344566666666666555
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00037 Score=50.89 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=24.9
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++...++. .++++|+.|||||||++.+.+.
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44455454444 4568899999999999999986
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00038 Score=51.15 Aligned_cols=34 Identities=29% Similarity=0.383 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++...+. .++++|+.|+|||||++.+.+.
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 344555554444 4558899999999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00032 Score=51.16 Aligned_cols=33 Identities=27% Similarity=0.371 Sum_probs=24.9
Q ss_pred HHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++...+.. ++++|+.|||||||++.+.+.
T Consensus 16 l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 334454545554 558899999999999999986
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00047 Score=48.96 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.5
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++...++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred EeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33444444444 4558899999999999999976
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00036 Score=50.96 Aligned_cols=34 Identities=32% Similarity=0.364 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345555555454 4558899999999999999986
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00037 Score=50.33 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=24.2
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++...+. .++++|+.|+|||||++.+.+.
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3444444444 4568899999999999999986
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0004 Score=49.09 Aligned_cols=33 Identities=30% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|+.|+|||||++.+.+.
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44455554444 5558899999999999999986
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0002 Score=52.93 Aligned_cols=34 Identities=32% Similarity=0.447 Sum_probs=27.6
Q ss_pred HHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+++..++.. ++++|+.|+|||||++.+.+.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 5666776666665 558899999999999999986
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00034 Score=51.29 Aligned_cols=34 Identities=32% Similarity=0.321 Sum_probs=26.6
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 456666665555 4558899999999999999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00031 Score=52.18 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 344555555455 4558899999999999999986
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00098 Score=53.35 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=58.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-----c---ccc---------------CCCcceeEE----------EeCCEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-----Q---HMP---------------TLHPTSEEL----------SMGDIVFT 68 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-----~---~~~---------------t~~~~~~~~----------~~~~~~~~ 68 (194)
.-++++|++||||||++..+...... - ... ..+...... ...+..+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 34678899999999999988752100 0 000 111111111 11356789
Q ss_pred EEEcCCCccc-hh---hHhhhhh-----cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 69 THDLGGHVQA-RR---VWRDYFP-----AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 69 ~~d~~g~~~~-~~---~~~~~~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
++||+|.... .. .+..++. ...-.++|+|++.. ..........+ + .-.+-=+++||.|-..
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~~~~~~~~f-~----~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHHTLTVLKAY-E----SLNYRRILLTKLDEAD 373 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHHHHHHHHHh-c----CCCCCEEEEEcccCCC
Confidence 9999996522 11 1222222 23467889998773 34444444443 1 1123357888888654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 194 | ||||
| 2gao_A | 208 | Crystal Structure Of Human Sar1a In Complex With Gd | 2e-65 | ||
| 1f6b_A | 198 | Crystal Structure Of Sar1-Gdp Complex Length = 198 | 2e-64 | ||
| 2fmx_A | 195 | An Open Conformation Of Switch I Revealed By Sar1-g | 9e-64 | ||
| 2fa9_A | 189 | The Crystal Structure Of Sar1[h79g]-gdp Provides In | 1e-62 | ||
| 1m2o_B | 190 | Crystal Structure Of The Sec23-Sar1 Complex Length | 1e-54 | ||
| 2qtv_B | 167 | Structure Of Sec23-Sar1 Complexed With The Active F | 9e-49 | ||
| 4goj_A | 189 | The Crystal Structure Of Full Length Arl3gppnhp In | 5e-19 | ||
| 1fzq_A | 181 | Crystal Structure Of Murine Arl3-Gdp Length = 181 | 5e-19 | ||
| 3bh7_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 8e-19 | ||
| 3bh6_A | 164 | Crystal Structure Of The Rp2-Arl3 Complex Bound To | 2e-18 | ||
| 2ksq_A | 181 | The Myristoylated Yeast Arf1 In A Gtp And Bicelle B | 5e-17 | ||
| 2k5u_A | 181 | Solution Structure Of Myirstoylated Yeast Arf1 Prot | 6e-17 | ||
| 3tjz_A | 164 | Crystal Structure Of Arf1 Bound To The GammaZETA-Co | 7e-17 | ||
| 1mr3_F | 181 | Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 | 7e-17 | ||
| 3rd1_A | 178 | Structure Of An Adp Ribosylation Factor From Entamo | 1e-16 | ||
| 1r4a_A | 165 | Crystal Structure Of Gtp-Bound Adp-Ribosylation Fac | 1e-16 | ||
| 3lvr_E | 497 | The Crystal Structure Of Asap3 In Complex With Arf6 | 1e-16 | ||
| 3aq4_A | 184 | Molecular Insights Into Plant Cell Proliferation Di | 2e-16 | ||
| 3lrp_A | 181 | Crystal Structure Of Plasmodium Falciparum Adp-Ribo | 2e-16 | ||
| 3o47_A | 329 | Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le | 2e-16 | ||
| 1rrg_A | 181 | Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com | 2e-16 | ||
| 1hur_A | 180 | Human Adp-Ribosylation Factor 1 Complexed With Gdp, | 3e-16 | ||
| 4dcn_A | 166 | Crystal Structure Analysis Of The Arfaptin2 Bar Dom | 3e-16 | ||
| 2a5d_A | 175 | Structural Basis For The Activation Of Cholera Toxi | 3e-16 | ||
| 2h57_A | 190 | Crystal Structure Of Human Adp-Ribosylation Factor- | 3e-16 | ||
| 1e0s_A | 174 | Small G Protein Arf6-Gdp Length = 174 | 3e-16 | ||
| 3n5c_A | 162 | Crystal Structure Of Arf6delta13 Complexed With Gdp | 5e-16 | ||
| 4fme_C | 160 | Espg-Rab1-Arf6 Complex Length = 160 | 5e-16 | ||
| 3pcr_B | 162 | Structure Of Espg-Arf6 Complex Length = 162 | 7e-16 | ||
| 2a5g_A | 175 | Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length | 8e-16 | ||
| 2x77_A | 189 | Crystal Structure Of Leishmania Major Adp Ribosylat | 9e-16 | ||
| 2b6h_A | 192 | Structure Of Human Adp-Ribosylation Factor 5 Length | 9e-16 | ||
| 3vhx_A | 172 | The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi | 1e-15 | ||
| 1re0_A | 164 | Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe | 1e-15 | ||
| 2w83_A | 165 | Crystal Structure Of The Arf6 Gtpase In Complex Wit | 1e-15 | ||
| 1moz_A | 183 | Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo | 2e-15 | ||
| 1z6x_A | 180 | Structure Of Human Adp-Ribosylation Factor 4 Length | 2e-15 | ||
| 1j2j_A | 166 | Crystal Structure Of Gga1 Gat N-terminal Region In | 3e-15 | ||
| 1upt_A | 171 | Structure Of A Complex Of The Golgin-245 Grip Domai | 5e-15 | ||
| 1yzg_A | 179 | Structure Of Human Adp-ribosylation Factor-like 8 L | 9e-15 | ||
| 1z6y_A | 179 | Structure Of Human Adp-Ribosylation Factor-Like 5 L | 2e-14 | ||
| 1zj6_A | 187 | Crystal Structure Of Human Arl5 Length = 187 | 2e-14 | ||
| 2h17_A | 181 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-14 | ||
| 2h16_A | 183 | Structure Of Human Adp-Ribosylation Factor-Like 5 ( | 2e-14 | ||
| 3doe_A | 192 | Complex Of Arl2 And Bart, Crystal Form 1 Length = 1 | 7e-14 | ||
| 2h18_A | 193 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 8e-14 | ||
| 2al7_A | 186 | Structure Of Human Adp-Ribosylation Factor-Like 10c | 2e-13 | ||
| 4bas_A | 199 | Structure Of The Arl6 Bbs3 Small Gtpase From Trypan | 2e-13 | ||
| 1ksh_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati | 4e-13 | ||
| 1ksg_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt | 6e-13 | ||
| 1zd9_A | 188 | Structure Of Human Adp-Ribosylation Factor-Like 10b | 2e-12 | ||
| 4gok_B | 169 | The Crystal Structure Of Arl2gppnhp In Complex With | 2e-12 | ||
| 1ksj_A | 186 | Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme | 4e-10 |
| >pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp Length = 208 | Back alignment and structure |
|
| >pdb|1F6B|A Chain A, Crystal Structure Of Sar1-Gdp Complex Length = 198 | Back alignment and structure |
|
| >pdb|2FMX|A Chain A, An Open Conformation Of Switch I Revealed By Sar1-gdp Crystal Structure At Low Mg(2+) Length = 195 | Back alignment and structure |
|
| >pdb|2FA9|A Chain A, The Crystal Structure Of Sar1[h79g]-gdp Provides Insight Into The Coat-controlled Gtp Hydrolysis In The Disassembly Of Cop Ii Length = 189 | Back alignment and structure |
|
| >pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex Length = 190 | Back alignment and structure |
|
| >pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment Of Sec31 Length = 167 | Back alignment and structure |
|
| >pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 189 | Back alignment and structure |
|
| >pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp Length = 181 | Back alignment and structure |
|
| >pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gdp-Alf4 Length = 164 | Back alignment and structure |
|
| >pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To Gppnhp Length = 164 | Back alignment and structure |
|
| >pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181 | Back alignment and structure |
|
| >pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181 | Back alignment and structure |
|
| >pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164 | Back alignment and structure |
|
| >pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181 | Back alignment and structure |
|
| >pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178 | Back alignment and structure |
|
| >pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor Like Protein 1 (Arl1) And Grip Domain Of Golgin245 Complex Length = 165 | Back alignment and structure |
|
| >pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497 | Back alignment and structure |
|
| >pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation Disturbance By Agrobacterium Protein 6b Length = 184 | Back alignment and structure |
|
| >pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181 | Back alignment and structure |
|
| >pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329 | Back alignment and structure |
|
| >pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181 | Back alignment and structure |
|
| >pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full Length = 180 | Back alignment and structure |
|
| >pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In Complex With Arl1 Length = 166 | Back alignment and structure |
|
| >pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175 | Back alignment and structure |
|
| >pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190 | Back alignment and structure |
|
| >pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174 | Back alignment and structure |
|
| >pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162 | Back alignment and structure |
|
| >pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160 | Back alignment and structure |
|
| >pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162 | Back alignment and structure |
|
| >pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175 | Back alignment and structure |
|
| >pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation Factor-Like 1. Length = 189 | Back alignment and structure |
|
| >pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5 Length = 192 | Back alignment and structure |
|
| >pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172 | Back alignment and structure |
|
| >pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164 | Back alignment and structure |
|
| >pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165 | Back alignment and structure |
|
| >pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183 | Back alignment and structure |
|
| >pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180 | Back alignment and structure |
|
| >pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex With Arf1 Gtp Form Length = 166 | Back alignment and structure |
|
| >pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With Arl1 Length = 171 | Back alignment and structure |
|
| >pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8 Length = 179 | Back alignment and structure |
|
| >pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179 | Back alignment and structure |
|
| >pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187 | Back alignment and structure |
|
| >pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181 | Back alignment and structure |
|
| >pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183 | Back alignment and structure |
|
| >pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192 | Back alignment and structure |
|
| >pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193 | Back alignment and structure |
|
| >pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186 | Back alignment and structure |
|
| >pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma Brucei With Bound Nucleotide Analogue Gppnp Length = 199 | Back alignment and structure |
|
| >pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186 | Back alignment and structure |
|
| >pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186 | Back alignment and structure |
|
| >pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188 | Back alignment and structure |
|
| >pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With Unc119a Length = 169 | Back alignment and structure |
|
| >pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 186 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 6e-83
Identities = 119/191 (62%), Positives = 150/191 (78%)
Query: 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG 63
I++ F VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++
Sbjct: 8 IYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA 67
Query: 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123
+ FTT DLGGH+QARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +V
Sbjct: 68 GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV 127
Query: 124 PILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183
PILILGNKID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G
Sbjct: 128 PILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYG 187
Query: 184 NGFRWLANYID 194
GFRW+A YID
Sbjct: 188 EGFRWMAQYID 198
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190 | Back alignment and structure |
|---|
Score = 235 bits (601), Expect = 7e-80
Identities = 109/193 (56%), Positives = 136/193 (70%), Gaps = 5/193 (2%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
++I+ FR+VL LGLW K GKLLFLGLDNAGKT LL MLKNDR A PT HPTSEEL
Sbjct: 3 GWDIFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEEL 62
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
++G+I FTT DLGGH+QARR+W+DYFP V+ IVF++DA+D RF E++ ELD L L
Sbjct: 63 AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAEL 122
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
DVP +ILGNKID +A SE E+R GL T + + RP+E+FMCSV+ R
Sbjct: 123 KDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ-----RPVEVFMCSVVMRN 177
Query: 181 GFGNGFRWLANYI 193
G+ F+WL+ YI
Sbjct: 178 GYLEAFQWLSQYI 190
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 1e-59
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M ++ L L + ++L LGLDNAGKT +L L +PT+ E L
Sbjct: 3 MGAWLASLKQTLGLL-PADRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETL 61
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
+I F DLGG R WR YF DA+++++D++DR R +K+EL LL +D L
Sbjct: 62 QYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDEL 121
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+LI NK D+ DAASE E+ G+ + R + S
Sbjct: 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN------------RTWTIVKSSSKTGD 169
Query: 181 GFGNGFRWLANYI 193
G G WL +
Sbjct: 170 GLVEGMDWLVERL 182
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-54
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 12/177 (6%)
Query: 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76
+ ++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG
Sbjct: 3 HMTREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLT 62
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
R WR Y+ DA+++++D+ DR R SK EL +L ++ L +++ NK D+
Sbjct: 63 SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122
Query: 137 AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
A + E+ + GL L R ++F S K G WL +
Sbjct: 123 AMTSSEMANSLGLPALKD------------RKWQIFKTSATKGTGLDEAMEWLVETL 167
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 4e-53
Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 15/193 (7%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M I++ +L K ++L LGLD AGKT +L L+ PT+ E L
Sbjct: 1 MGNIFSSM---FDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETL 57
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
S ++ DLGG R WR Y+ A++F++D++D+ R + EL +L ++ L
Sbjct: 58 SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEEL 117
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
D +L+ NK D A S EV L L R + S +K +
Sbjct: 118 QDAALLVFANKQDQPGALSASEVSKELNLVELKD------------RSWSIVASSAIKGE 165
Query: 181 GFGNGFRWLANYI 193
G G WL + I
Sbjct: 166 GITEGLDWLIDVI 178
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 6e-53
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 12/179 (6%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGG 74
+ + K++ +GLDNAGKT +L + PT+ EE+ + + F D+GG
Sbjct: 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGG 74
Query: 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
R W Y+ + ++ ++D++DR R ++ EL +LA + L +LI NK D+
Sbjct: 75 QESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + E+ F L + + C L +G G W+ + +
Sbjct: 135 KECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGEGLCQGLEWMMSRL 181
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187 | Back alignment and structure |
|---|
Score = 161 bits (409), Expect = 7e-51
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 17/193 (8%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
M ++T+ + + K++ +GLDNAGKT +L + PT+ EE+
Sbjct: 1 MGILFTRIWRLF-----NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEI 55
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
+ + F D+GG R W Y+ + ++ ++D++DR R ++ EL +LA + L
Sbjct: 56 VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDL 115
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+LI NK D+ + + E+ F L + + C L +
Sbjct: 116 RKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD------------HQWHIQACCALTGE 163
Query: 181 GFGNGFRWLANYI 193
G G W+ + +
Sbjct: 164 GLCQGLEWMMSRL 176
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 2e-49
Identities = 55/183 (30%), Positives = 87/183 (47%), Gaps = 16/183 (8%)
Query: 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLK--NDRTAQHMPTLHPTSEELSMGDIVFTTHDL 72
+ K +L LGLDN+GKT ++ LK N ++ +PT+ + E+ + FT D+
Sbjct: 15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 74
Query: 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALT--DVPILILGN 130
G + R +W Y+ AI+F+ID+SDR R +K ELD LL + +PIL N
Sbjct: 75 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
K+D+ DA + +V L + +P + +K +G G WL
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENIKD------------KPWHICASDAIKGEGLQEGVDWLQ 182
Query: 191 NYI 193
+ I
Sbjct: 183 DQI 185
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-49
Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 18/193 (9%)
Query: 1 MFEIWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL 60
+ I K + + ++L LGLDNAGKT LL+ L ++ + PT + +
Sbjct: 2 LLSILRKLK------SAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSV 55
Query: 61 SMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL 120
D+GG + R WR YF D ++++ID++DR RF E+ EL LL ++ L
Sbjct: 56 QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKL 115
Query: 121 TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQ 180
+ VP+LI NK D+ AA E+ L+ + R ++ CS L +
Sbjct: 116 SCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD------------RVWQIQSCSALTGE 163
Query: 181 GFGNGFRWLANYI 193
G +G W+ +
Sbjct: 164 GVQDGMNWVCKNV 176
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192 | Back alignment and structure |
|---|
Score = 152 bits (386), Expect = 3e-47
Identities = 55/182 (30%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
L KK ++L +GLD AGKT +L LK +PT+ E + +I FT D
Sbjct: 20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWD 79
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG + R +WR YF ++F++D++DR R ES EL +L +D L D +L+ NK
Sbjct: 80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANK 139
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ +A E+ GL L + R + + G +G WL++
Sbjct: 140 QDMPNAMPVSELTDKLGLQHLRS------------RTWYVQATCATQGTGLYDGLDWLSH 187
Query: 192 YI 193
+
Sbjct: 188 EL 189
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164 | Back alignment and structure |
|---|
Score = 151 bits (383), Expect = 3e-47
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R YF ++F++D++DR R E++ EL +LA+D L D +L+ NK D+ +A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ GL+ L R + G G WL+N +
Sbjct: 122 ITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 1e-46
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
L ++ ++ +LL LGLDNAGKT +L+ + PTL + L D
Sbjct: 9 LKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWD 68
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG R WR+YF + D +++++D++DR R + + EL +LL ++ L +LI NK
Sbjct: 69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANK 128
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ A S + ++ L + + + CS + + G WL +
Sbjct: 129 QDLPGALSCNAIQEALELDSIRS------------HHWRIQGCSAVTGEDLLPGIDWLLD 176
Query: 192 YI 193
I
Sbjct: 177 DI 178
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 3e-46
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 16 GLWKKSGK----LLFLGLDNAGKTFLLQMLKNDRTAQHM-PTLHPTSEELSMGDIVFTTH 70
GL + K L +GL +GKT + ++ + + + M PT+ +++ G++
Sbjct: 13 GLVPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLW 72
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130
D+GG + R +W Y V AIV+++DA+D+ + SK EL NLL L +P+L+LGN
Sbjct: 73 DIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGN 132
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
K D+ A E E+ L + R + + S ++ +WL
Sbjct: 133 KRDLPGALDEKELIEKMNLSAIQD------------REICCYSISCKEKDNIDITLQWLI 180
Query: 191 NYI 193
+
Sbjct: 181 QHS 183
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218 | Back alignment and structure |
|---|
Score = 139 bits (352), Expect = 8e-42
Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 15 LGLWKKSGK--LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDL 72
+G+ +KS + ++ G N+GKT LL +L D + + P S G T D
Sbjct: 4 MGIKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADYDG-SGVTLVDF 62
Query: 73 GGHVQARRVWRDYFP----AVDAIVFIIDAS-DRSRFPESKYELDNLLADDALTD---VP 124
GHV+ R DY V ++F++D++ D + + L ++L+ + +
Sbjct: 63 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID 122
Query: 125 ILILGNKIDIFDAASEDEVRH 145
ILI NK ++F A +++
Sbjct: 123 ILIACNKSELFTARPPSKIKD 143
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-41
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 12/151 (7%)
Query: 5 WTKFREVLLRLGLWKKSGK---LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELS 61
W ++ + L G ++ G N+GKT LL +L D + + P S
Sbjct: 29 WREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY 88
Query: 62 MGDIVFTTHDLGGHVQARRVWRDYFP----AVDAIVFIIDAS-DRSRFPESKYELDNLLA 116
G T D GHV+ R DY V ++F++D++ D + + L ++L+
Sbjct: 89 DG-SGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILS 147
Query: 117 DDALTD---VPILILGNKIDIFDAASEDEVR 144
+ + ILI NK ++F A +++
Sbjct: 148 ITESSCENGIDILIACNKSELFTARPPSKIK 178
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 8e-40
Identities = 55/176 (31%), Positives = 86/176 (48%), Gaps = 12/176 (6%)
Query: 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
KK ++L +GLD AGKT +L LK +PT+ E + +I FT D+GG +
Sbjct: 162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDK 221
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R +WR YF ++F++D++DR R E++ EL +LA+D L D +L+ NK D+ +A
Sbjct: 222 IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ E+ GL+ L R + G G WL+N +
Sbjct: 282 MNAAEITDKLGLHSLRH------------RNWYIQATCATSGDGLYEGLDWLSNQL 325
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 2e-36
Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 21/181 (11%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGH 75
+LF+GL ++GKT L L + ++ +S + T DL GH
Sbjct: 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGH 64
Query: 76 VQAR-RVWRDYFPAVDAIVFIIDASDRSRF-PESKYELDNLLADDALT--DVPILILGNK 131
R ++ + + A+VF++D++ R + L +L D +LI NK
Sbjct: 65 ESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
DI A S ++ E+ +R S L L
Sbjct: 125 QDIAMAKSAKLIQQQLEK------------ELNTLRVTRSAAPSTLD--SSSTAPAQLGK 170
Query: 192 Y 192
Sbjct: 171 K 171
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-29
Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 38/196 (19%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-----------AQHMPTL-----HPTSEELSM 62
+ + K+++ G +GKT L+ + + + TL E+
Sbjct: 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKG 71
Query: 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD----- 117
F + + G V + VD IVF+ D S +R + + N+ +
Sbjct: 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVAD-SAPNRLRANAESMRNMRENLAEYG 130
Query: 118 DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177
L DVPI+I NK D+ DA + VR +
Sbjct: 131 LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----------------EGKFPVLEAVAT 174
Query: 178 KRQGFGNGFRWLANYI 193
+ +G + ++ +
Sbjct: 175 EGKGVFETLKEVSRLV 190
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 5e-21
Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 17 LWKKSGKLLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSM-GDIVFTTHD 71
++L +GL +GK+ + + + T T +++S + F D
Sbjct: 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWD 75
Query: 72 LGGHVQARRVWRD---YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128
G + D F A++++IDA D ++ + A D+ +
Sbjct: 76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVF 135
Query: 129 GNKIDIFDAASEDEVR 144
+K+D + E +
Sbjct: 136 IHKVDGLSDDHKIETQ 151
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 8e-17
Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 11/133 (8%)
Query: 23 KLLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSM-GDIVFTTHDLGGHVQ 77
KLL +G +GK+ + T + T+ L G++ D GG
Sbjct: 5 KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV 64
Query: 78 -----ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDAL-TDVPILILGNK 131
+ F V ++ + D + + L D I +L +K
Sbjct: 65 FMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHK 124
Query: 132 IDIFDAASEDEVR 144
+D+ +E+
Sbjct: 125 MDLVQLDKREELF 137
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} Length = 227 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 4e-13
Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 19/132 (14%)
Query: 67 FTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA----DDALTD 122
G + VD +++ +A R E +++A +
Sbjct: 104 EGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSG 162
Query: 123 VPILILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181
P+L+L + H L L P + G
Sbjct: 163 RPLLVLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTG 209
Query: 182 FGNGFRWLANYI 193
F NG W+ +
Sbjct: 210 FLNGIEWILEEV 221
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 8e-13
Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Query: 24 LLFLGLDNAGKT----FLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
+L +G+ GK+ + ++ T T +P+ E S I +L G +
Sbjct: 2 VLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTL-IDLAVMELPGQLNYF 60
Query: 80 RVW---RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
F +V A+V++ID+ D + + A + I +L +K+D
Sbjct: 61 EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120
Query: 137 AASEDEVR 144
+ + +
Sbjct: 121 EDFKVDAQ 128
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 1e-11
Identities = 19/126 (15%), Positives = 33/126 (26%), Gaps = 19/126 (15%)
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA----DDALTDVPIL 126
G + VD +++ +A R E +++A + P+L
Sbjct: 193 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQD-EFSHIMAMTDPAFGSSGRPLL 251
Query: 127 ILG-NKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185
+L + H L L P + GF NG
Sbjct: 252 VLSCISQGDVKRMPCFYLAHELHLNLLN-------------HPWLVQDTEAETLTGFLNG 298
Query: 186 FRWLAN 191
W+
Sbjct: 299 IEWILE 304
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 4e-10
Identities = 40/230 (17%), Positives = 76/230 (33%), Gaps = 64/230 (27%)
Query: 3 EIWTKFREVLLRLGLWKKSGKLLFL-GLDNAGKTFL-LQMLKNDRTAQHMPTLHPTSEE- 59
+ + K R+ LL L + K + + G+ +GKT++ L + + + M +
Sbjct: 135 QPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD------FKI 184
Query: 60 --LSMGDIVFTTHDLGGHVQA--RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLL 115
L++ + + + +Q ++ ++ D ++ + R + EL LL
Sbjct: 185 FWLNLKN-CNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSIQAELRRLL 238
Query: 116 ADDA-------LTDV-------------PILILGNKIDIFDAAS---------------- 139
L +V IL+ + D S
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 140 -EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRW 188
DEV+ Y L + PRE+L P L + + R G W
Sbjct: 299 TPDEVKSLLLKY-LDCRPQDLPREVLTTNPRRLSIIAESIRDGLA---TW 344
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* Length = 402 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 1e-06
Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+ T + + + F D+GG RR W F V AI+F++ +S
Sbjct: 201 RVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIRED 260
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R E+ ++ + L + +++ NK D+
Sbjct: 261 NQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL 297
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* Length = 327 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 2e-06
Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+PT + ++F D+GG RR W F V +I+F++ S+
Sbjct: 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVES 210
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ESK ++ + +++ NK D+
Sbjct: 211 DNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLL 247
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... Length = 353 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-05
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD-------- 100
+ T + D+ F D+GG R+ W F V AI+F + SD
Sbjct: 177 RVKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAED 236
Query: 101 --RSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ES D++ + TD I++ NK D+F
Sbjct: 237 EEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLF 273
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* Length = 362 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-05
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 49 HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR------- 101
PT + + ++ F D+GG R+ W + F +V +I+F++ +S+
Sbjct: 185 RRPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMED 244
Query: 102 ---SRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+R ES + ++ + ++V I++ NK D+
Sbjct: 245 RQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLL 281
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} Length = 354 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 5e-05
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDAL 120
D+GG RR W F V A++F S+ ++R E+K D +L
Sbjct: 189 DVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCF 248
Query: 121 TDVPILILGNKIDIF 135
++ NK DIF
Sbjct: 249 EKTSFMLFLNKFDIF 263
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-05
Identities = 35/158 (22%), Positives = 60/158 (37%), Gaps = 13/158 (8%)
Query: 9 REVLLRL-GLWKKSGKLLFLGLDNAGKTFLLQML---KNDRTAQHMPTLHPTSEELSMGD 64
REVL L + + ++ G N GK+ LL+ L K + + T + G
Sbjct: 154 REVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY 213
Query: 65 IVFTTHDLGG-----HVQARRVWRDYFPAV----DAIVFIIDASDRSRFPESKYELDNLL 115
+ D G + + + A+ + I++I D S+ FP +
Sbjct: 214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273
Query: 116 ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLT 153
D+P L++ NKID+ D + + F GL
Sbjct: 274 VHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLN 311
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 2e-04
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 24/142 (16%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-------------TAQHMPTLHPTSEELSMGDIVFTT 69
K+ +G AGKT LL+ L + + P + + + + +F
Sbjct: 43 KVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHF 102
Query: 70 HDLGGHVQARRVWRDYF--PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
D GG + + +V ++ D Y L ++ + P+++
Sbjct: 103 WDFGGQEIMHASHQFFMTRSSVYMLLL-----DSRTDSNKHYWLRHI--EKYGGKSPVIV 155
Query: 128 LGNKIDIFD--AASEDEVRHFF 147
+ NKID + ++ F
Sbjct: 156 VMNKIDENPSYNIEQKKINERF 177
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695 | Back alignment and structure |
|---|
Score = 40.0 bits (92), Expect = 3e-04
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 4/89 (4%)
Query: 57 SEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLA 116
L G + + L + Y AI+F++ AS P + E L
Sbjct: 169 LTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQ----PCTLGERRYLEN 224
Query: 117 DDALTDVPILILGNKIDIFDAASEDEVRH 145
+ + L N D + D
Sbjct: 225 YIKGRGLTVFFLVNAWDQVRESLIDPDDV 253
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221 | Back alignment and structure |
|---|
Score = 38.5 bits (90), Expect = 6e-04
Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT F+ + L + +++ TL HP + G I F D G +
Sbjct: 17 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 76
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ + + D + R + +L ++PI++ GNK+DI D
Sbjct: 77 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDR 134
Query: 138 ASEDEVRHF 146
+ + F
Sbjct: 135 KVKAKSIVF 143
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 100.0 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 100.0 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 100.0 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 100.0 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 100.0 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 100.0 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 100.0 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 100.0 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 100.0 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 100.0 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 100.0 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 100.0 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 100.0 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 100.0 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 100.0 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.98 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.98 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.97 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.97 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.97 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.97 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.97 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.97 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.97 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.97 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.97 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.97 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.97 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.97 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.97 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.97 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.97 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.97 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.97 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.97 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.97 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.97 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.97 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.97 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.97 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.97 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.97 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.97 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.97 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.97 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.97 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.97 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.97 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.97 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.97 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.97 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.97 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.97 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.97 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.97 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.97 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.97 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.97 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.97 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.97 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.97 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.97 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.97 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.97 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.97 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.97 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.97 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.97 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.97 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.97 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.97 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.97 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.97 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.97 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.97 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.97 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.96 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.96 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.96 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.96 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.96 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.96 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.96 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.96 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.96 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.96 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.96 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.96 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.96 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.96 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.96 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.96 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.96 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.96 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.96 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.96 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.96 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.95 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.95 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.95 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.95 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.95 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.95 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.91 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.94 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.94 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.94 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 99.94 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.94 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.94 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.94 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.94 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.93 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.93 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.93 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.93 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.93 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.92 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.92 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.92 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.92 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.92 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.92 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.92 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.92 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.91 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.91 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.91 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.91 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.91 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.91 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 99.9 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.9 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.9 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.9 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.9 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.89 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.89 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.89 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.89 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.89 | |
| 3ohm_A | 327 | Guanine nucleotide-binding protein G(Q) subunit A; | 99.88 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.88 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 99.88 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.88 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.88 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.88 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.88 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.88 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.88 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.88 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.87 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.87 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.87 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.87 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.87 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.87 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.87 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.87 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.87 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.87 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.87 | |
| 4fid_A | 340 | G protein alpha subunit; RAS-like domain, all-heli | 99.86 | |
| 2xtz_A | 354 | Guanine nucleotide-binding protein alpha-1 subuni; | 99.86 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.86 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.85 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.85 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.85 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.84 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.84 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.84 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.83 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.83 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.82 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.81 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.81 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.8 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.8 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.8 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.79 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.78 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.77 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.77 | |
| 1azs_C | 402 | GS-alpha; complex (lyase/hydrolase), hydrolase, si | 99.77 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.77 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.76 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.75 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.74 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.72 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.72 | |
| 3l82_B | 227 | F-box only protein 4; TRFH domain, helix, GTPase d | 99.72 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.71 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.71 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.69 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 99.65 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.65 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.64 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.64 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.64 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.64 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.64 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.63 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 99.63 | |
| 3l2o_B | 312 | F-box only protein 4; small G protein fold, UBL co | 99.63 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 99.62 | |
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 99.62 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 99.56 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.51 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.41 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.39 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.36 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 99.05 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.04 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.99 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.95 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.92 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.88 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 98.87 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.86 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.83 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.66 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.65 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.63 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.58 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.51 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.48 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.47 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.4 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.22 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 98.13 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.05 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 97.79 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 97.75 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 97.7 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 97.68 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 97.67 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.66 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 97.65 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 97.63 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 97.61 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 97.6 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 97.6 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 97.59 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 97.59 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 97.58 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 97.56 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 97.55 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.55 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 97.54 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 97.54 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 97.53 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 97.53 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 97.52 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 97.52 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.52 | |
| 4dzz_A | 206 | Plasmid partitioning protein PARF; deviant walker | 97.52 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 97.51 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 97.51 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 97.51 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 97.51 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 97.5 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 97.5 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 97.49 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 97.48 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 97.48 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 97.47 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 97.47 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.46 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.46 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.46 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 97.45 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 97.45 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 97.45 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 97.42 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 97.41 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 97.39 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 97.38 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 97.38 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.37 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 97.37 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 97.36 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 97.34 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.34 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 97.34 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.34 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.33 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.33 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.32 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 97.31 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.3 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 97.28 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 97.27 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.27 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.26 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.26 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 97.26 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 97.26 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.25 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.25 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.23 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.23 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.22 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 97.22 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.21 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.21 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.2 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.2 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.2 | |
| 3end_A | 307 | Light-independent protochlorophyllide reductase ir | 97.2 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 97.2 | |
| 3cwq_A | 209 | Para family chromosome partitioning protein; alpha | 97.2 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.19 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 97.19 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.19 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 97.17 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.17 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.16 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 97.16 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.15 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 97.15 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.14 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.14 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.14 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 97.13 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.13 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.13 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.12 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 97.12 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.11 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 97.11 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.1 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 97.09 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.09 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.08 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.07 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.07 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.07 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.06 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.06 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 97.06 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 97.05 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.04 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.03 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.03 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.03 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.02 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.02 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.02 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 97.02 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 97.02 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 97.01 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 97.01 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 97.01 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.01 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.99 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.99 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.99 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.99 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.98 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 96.97 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.97 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 96.96 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.96 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 96.95 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.95 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 96.94 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 96.94 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.94 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.94 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.94 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 96.93 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 96.92 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.92 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 96.9 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.9 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.89 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.89 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 96.89 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.89 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.87 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 96.86 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.84 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.84 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.84 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.84 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 96.83 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.82 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.82 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 96.81 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.8 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.79 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.79 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.78 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.78 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.78 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 96.77 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 96.77 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.76 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.75 | |
| 3k9g_A | 267 | PF-32 protein; ssgcid, SBRI, decode biostructures, | 96.74 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.74 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.73 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.72 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.71 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.7 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.7 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.7 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 96.7 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.69 | |
| 3uc9_A | 233 | Increased recombination centers protein 6; rossman | 96.69 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 96.67 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.67 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 96.66 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 96.66 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.66 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.65 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 96.64 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 96.62 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.62 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.61 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.6 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.59 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.59 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 96.59 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.58 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.58 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 96.58 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.57 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 96.56 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 96.53 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 96.53 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.53 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 96.53 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 96.53 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 96.51 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 96.5 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.49 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.48 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.46 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.45 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.45 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 96.44 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 96.44 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.44 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.43 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 96.43 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 96.43 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.42 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.41 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.41 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.4 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 96.4 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 96.38 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 96.38 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 96.38 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.35 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 96.33 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.32 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.32 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.32 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 96.31 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 96.31 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.3 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.28 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.26 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 96.25 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 96.24 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.22 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.21 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.21 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 96.21 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.2 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 96.19 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.18 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 96.18 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.15 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.13 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 96.11 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 96.11 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.1 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 96.09 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 96.07 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 96.03 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.03 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 96.02 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.02 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 96.01 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.01 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 96.0 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.0 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 96.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 95.98 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.97 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 95.97 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.96 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.95 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.95 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.95 |
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=224.26 Aligned_cols=194 Identities=62% Similarity=1.057 Sum_probs=149.2
Q ss_pred CccHHHH----HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 1 MFEIWTK----FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 1 ~~~~~~~----~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
|++++.| +++.+..+++..+..+|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++
T Consensus 1 ~~~~~~~~~~~~~~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~ 80 (198)
T 1f6b_A 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHI 80 (198)
T ss_dssp ------------CHHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC--
T ss_pred CcHHHHHHHHHHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcH
Confidence 6778888 888999999889999999999999999999999999988888899999999999999999999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~ 156 (194)
+++..+..+++++|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++........
T Consensus 81 ~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 160 (198)
T 1f6b_A 81 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGK 160 (198)
T ss_dssp --CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCS
T ss_pred hhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccc
Confidence 99999999999999999999999999999999999998876555789999999999998877888888887653311111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+...........+++++|||++|+|++++|++|.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~l~ 198 (198)
T 1f6b_A 161 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYID 198 (198)
T ss_dssp SCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred cccccccccCceEEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 11111111234578999999999999999999998764
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=212.76 Aligned_cols=185 Identities=61% Similarity=1.019 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHh
Q psy2159 4 IWTKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~ 83 (194)
++.++++.++.+++..++.+|+++|++|||||||++++.+..+..+.+|.+.+...+.+++..+.+||+||+++++..+.
T Consensus 6 ~~~~~~~~l~~~~~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 85 (190)
T 1m2o_B 6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWK 85 (190)
T ss_dssp ------------------CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGG
T ss_pred HHHHHHHHHHHhhccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 56677888888888899999999999999999999999999988889999999999999999999999999999999989
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+++.+|++++|+|++++.++.....|+..++......+.|+++|+||+|+.+....+++.+.++... ....+. -
T Consensus 86 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~----~ 160 (190)
T 1m2o_B 86 DYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQR----I 160 (190)
T ss_dssp GGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC-------C
T ss_pred HHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-cccccc----c
Confidence 99999999999999999999999999999988765557899999999999988777888888776532 111110 0
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++|||++|.|++++|++|.+.+
T Consensus 161 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 161 EGQRPVEVFMCSVVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp CSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred cccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence 123457899999999999999999998864
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=205.66 Aligned_cols=164 Identities=26% Similarity=0.555 Sum_probs=141.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+.++|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++++...+..+++++|++++|+|
T Consensus 13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 36789999999999999999999998888888899999888999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++++++.....|+..+.......+.|+++|+||+|+.+....+++.+.+.... .....+.++++||+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~ 160 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCAL 160 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTT
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhh------------hcCCCcEEEEccCC
Confidence 999999999999999998764456899999999999988777788877765432 23344789999999
Q ss_pred cCCChHHHHHHHhhhc
Q psy2159 178 KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i 193 (194)
+|.|++++|++|.+.+
T Consensus 161 ~g~gi~~l~~~l~~~~ 176 (187)
T 1zj6_A 161 TGEGLCQGLEWMMSRL 176 (187)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999998865
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=206.48 Aligned_cols=163 Identities=29% Similarity=0.549 Sum_probs=143.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++.+.....+.||.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 95 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDS 95 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEET
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEEC
Confidence 67899999999999999999999988866888999988888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....|+..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++
T Consensus 96 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 96 ADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVT 163 (186)
T ss_dssp TCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhh------------ccCCceEEEEeeCCC
Confidence 99999999999999988765557899999999999988777777777665422 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 164 ~~gi~~l~~~l~~~i 178 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDI 178 (186)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998865
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-34 Score=203.11 Aligned_cols=163 Identities=33% Similarity=0.622 Sum_probs=143.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|||||||++++.+..+..+.||.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 93 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDS 93 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 67899999999999999999999998888888999988888899999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....|+..++......+.|+++++||+|+.+....+++.+.+.... .....+++++|||++
T Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 94 ADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSALT 161 (181)
T ss_dssp TCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred cCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchh------------ccCCceEEEEccCCC
Confidence 99999999999998887655557899999999999988767777777664322 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNV 176 (181)
T ss_dssp CTTHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998875
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=206.52 Aligned_cols=163 Identities=36% Similarity=0.585 Sum_probs=144.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.++++|+++|++|||||||++++....+..+.||.+.....+..++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 58899999999999999999999988888888899988888999999999999999999998888899999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.... .....++++++||++
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSS------------IMNRTWTIVKSSSKT 167 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhh------------ccCCceEEEEccCCC
Confidence 99999999999999998776667899999999999988777777777665432 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 168 ~~gi~~l~~~l~~~i 182 (189)
T 2x77_A 168 GDGLVEGMDWLVERL 182 (189)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 999999999998865
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=199.29 Aligned_cols=160 Identities=33% Similarity=0.593 Sum_probs=141.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
++|+++|++|||||||++++.+..+..+.||.+.....+..++..+.+||+||++++...+..+++++|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 48999999999999999999998888888899988888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
+++.....|+..++.....++.|+++|+||+|+.+....+++...+.... .....+++++|||++|.|
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDG 148 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCccc------------ccCccEEEEEcccCCCcC
Confidence 99999999999988765557899999999999988767777777665432 233457899999999999
Q ss_pred hHHHHHHHhhhc
Q psy2159 182 FGNGFRWLANYI 193 (194)
Q Consensus 182 v~~l~~~l~~~i 193 (194)
++++|++|.+.+
T Consensus 149 i~~l~~~l~~~i 160 (164)
T 1r8s_A 149 LYEGLDWLSNQL 160 (164)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=198.76 Aligned_cols=163 Identities=31% Similarity=0.564 Sum_probs=144.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|++|+|||||++++.+..+..+.||.+.....+.+++..+.+||+||++++...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 56789999999999999999999999888888999988888999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....++..++......+.|+++|+||+|+.+....+++...+.... .....++++++||++
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATK 152 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTT
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchh------------ccCCceEEEECcCCC
Confidence 99999999999999988765557899999999999988767777777665432 233457899999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.|++++|++|.+.+
T Consensus 153 ~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 153 GTGLDEAMEWLVETL 167 (171)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999998865
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=207.56 Aligned_cols=170 Identities=32% Similarity=0.575 Sum_probs=142.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+++.+ ...+.++|+++|++|||||||++++....+..+.||.+.....+..++..+.+||+||++++...+..+++.+|
T Consensus 20 ~~~~~-~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 20 LFSRI-FGKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp GGGGT-TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred HHHHh-ccCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence 34444 35678999999999999999999999988888888999888888899999999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.... .....++
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~ 166 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQH------------LRSRTWY 166 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEE
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccCCceE
Confidence 9999999999999999999999988765556899999999999988767777777765433 3334578
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||++|.|++++|++|.+.+
T Consensus 167 ~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 167 VQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp EEECBTTTTBTHHHHHHHHHHHT
T ss_pred EEECcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999876
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=202.98 Aligned_cols=175 Identities=31% Similarity=0.524 Sum_probs=147.1
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhh
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF 86 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~ 86 (194)
.++.+++.+-...++++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++++...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 83 (183)
T 1moz_A 4 IFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYY 83 (183)
T ss_dssp HHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTT
T ss_pred HHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHh
Confidence 35555555422268899999999999999999999988888888999988888999999999999999999999899999
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|++++.++.....++..++......+.|+++|+||+|+.+....+++.+.+.... ...
T Consensus 84 ~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~ 151 (183)
T 1moz_A 84 ADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE------------LKD 151 (183)
T ss_dssp TTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT------------CCS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCccc------------ccC
Confidence 99999999999999999999999999998765567899999999999988777788877775433 233
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++++||++|.|++++|++|.+.+
T Consensus 152 ~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 152 RSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp SCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred CceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 457899999999999999999998765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=200.97 Aligned_cols=165 Identities=26% Similarity=0.546 Sum_probs=143.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...+.++|+++|.+|||||||++++.+..+..+.+|.+.+...+.+++..+.+||+||++++...+..+++.+|++++|+
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 96 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVV 96 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEE
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 45678899999999999999999999999988889999998899999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....++..++......+.|+++|+||+|+......+++.+.+.... .....+.++++||
T Consensus 97 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa 164 (181)
T 2h17_A 97 DSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCA 164 (181)
T ss_dssp ETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBT
T ss_pred ECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCccc------------ccCCceEEEEccC
Confidence 9999999999999999988754457899999999999988777788877765432 2334478999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|++|.+.+
T Consensus 165 ~~g~gi~~l~~~l~~~l 181 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSRL 181 (181)
T ss_dssp TTTBTHHHHHHHHHTC-
T ss_pred CCCcCHHHHHHHHHhhC
Confidence 99999999999998764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=211.21 Aligned_cols=158 Identities=23% Similarity=0.261 Sum_probs=128.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.+||+++|.+|||||||++++..+.|. .+.||++.+. ..+..++ +.+.+|||+|++++..+++.++++++++
T Consensus 10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 357789999999999999999999999887 6788888764 3444454 7899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++++|..+..|+..+.... .++.|++||+||+|+.+ .++.++..++.+... +.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~ 151 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-----------------VM 151 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhC-----------------Ce
Confidence 99999999999999999999887643 36789999999999865 567888887776654 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|++|||++|.||+++|+.|.+.+
T Consensus 152 ~~e~SAktg~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 152 FIETSAKAGYNVKQLFRRVAAAL 174 (216)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHC
T ss_pred eEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998865
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=199.35 Aligned_cols=164 Identities=29% Similarity=0.513 Sum_probs=143.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.++.++|+++|++|||||||++++.+..+. .+.+|.+.+...+...+..+.+||+||++++...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 456789999999999999999999988876 6788999988888889999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|++++.++.....|+..++......+.|+++|+||+|+......+++.+.+.... .....+.++++||
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA 166 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISC 166 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCT
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhh------------hccCCeeEEEEEC
Confidence 9999999999999999987764457899999999999988766777776665432 2234578999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.|++++|++|.+.+
T Consensus 167 ~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 167 KEKDNIDITLQWLIQHS 183 (188)
T ss_dssp TTCTTHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999876
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-32 Score=197.00 Aligned_cols=165 Identities=33% Similarity=0.588 Sum_probs=141.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCC--CCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDR--TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
...+.++|+++|++|||||||++++.+.. ...+.+|.+.....+.+++..+.+||+||++++...+..+++.+|++++
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 44678899999999999999999999887 3467889998888899999999999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCC--CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDAL--TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++.....++..++..... .+.|+++|+||+|+.+....+++.+.+.... .....+.++
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~ 164 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLEN------------IKDKPWHIC 164 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhh------------ccCCceEEE
Confidence 99999988899999999998877554 6899999999999988777788887775322 223457899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 165 ASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp ECBTTTTBTHHHHHHHHHHHC
T ss_pred EccCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999876
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-33 Score=199.47 Aligned_cols=164 Identities=30% Similarity=0.555 Sum_probs=139.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
..+..+|+++|.+|||||||++++.+..+.. +.+|.+.....+...+..+.+||+||++++...+..+++.+|++++|
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 4577899999999999999999999998875 48899988888888899999999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCC-------CCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 96 IDASDRSRFPESKYELDNLLADDAL-------TDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
+|++++.+|.....|+..++..... .+.|+++|+||+|+......+++.+.+.... . ...
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------------~~~~~ 161 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTT------------LMGDH 161 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHH------------HHTTS
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchh------------hccCC
Confidence 9999999999999999988765211 3799999999999988777778777765322 1 334
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+++|||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~Sa~~g~gv~~l~~~l~~~~ 187 (199)
T 4bas_A 162 PFVIFASNGLKGTGVHEGFSWLQETA 187 (199)
T ss_dssp CEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred eeEEEEeeCCCccCHHHHHHHHHHHH
Confidence 57899999999999999999998864
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.2e-31 Score=206.94 Aligned_cols=163 Identities=34% Similarity=0.595 Sum_probs=141.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
.+.++|+++|.+|+|||||++++.+..+....||.+.....+...+..+.+|||||++++...+..+++.+|++++|+|+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 35569999999999999999999999988777899999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecccc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK 178 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 178 (194)
+++.++.....++..++......+.|+++|+||+|+.+....+++...+.... .....++++++||++
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~vSAk~ 310 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATS 310 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTT------------CCSSCEEEEECBTTT
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhh------------hhcCCCEEEEEECCC
Confidence 99999999999999998876667899999999999988777888888876544 344568999999999
Q ss_pred CCChHHHHHHHhhhc
Q psy2159 179 RQGFGNGFRWLANYI 193 (194)
Q Consensus 179 ~~~v~~l~~~l~~~i 193 (194)
|.||+++|++|.+.+
T Consensus 311 g~gi~el~~~l~~~l 325 (329)
T 3o47_A 311 GDGLYEGLDWLSNQL 325 (329)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999999999875
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-31 Score=186.17 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=108.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.++|+++|++|||||||++++.+.......++.+.+.. .+..++ ..+.+||+||++++...+..+++.+|++++|+
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 357999999999999999999998777666666665543 344555 67899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... .+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 143 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIET 143 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTT-----------------CEEEEC
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhC-----------------CcEEEe
Confidence 9999999999999999998876667899999999999875 445555555554433 689999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 144 Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 144 SAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp BGGGTBSHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHH
Confidence 9999999999999998865
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=185.48 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc--chhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ--ARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~--~~~~~~~~~~~~d~i 92 (194)
.+.++|+++|++|||||||++++.+..+....++.+.+ ...+.+++ ..+.+||+||+.. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 35689999999999999999999998887666666665 34566666 4789999999987 566777788999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... ++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 144 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD-----------------CK 144 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHT-----------------SE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcC-----------------Ce
Confidence 99999999999999998888887765556899999999999975 344555555443322 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 145 FIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=182.46 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=129.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeC--CEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.... .+..+ ...+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4679999999999999999999988775 45666665443 33344 36899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+.. ...++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~~ 145 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc----------------cCCcEEE
Confidence 99999999999988888887654457899999999999865 34455666555432 1378999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred ecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=182.66 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=130.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..++++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 356789999999999999999999988776 4556666554 3445554 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+ ....++......... ++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LL 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHHcC-----------------Ce
Confidence 99999999988999988888876542 36789999999999864 345566666554433 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 145 FMETSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTS
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999876
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=188.56 Aligned_cols=157 Identities=18% Similarity=0.268 Sum_probs=126.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999998875 566776654 45666776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce-E
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM-E 170 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 170 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....+++.+..+... + .
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 168 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYD-----------------ILC 168 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHHcC-----------------CCE
Confidence 9999999999999998888876543 36799999999999975 456677777665433 5 8
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 169 ~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 169 AIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=185.48 Aligned_cols=159 Identities=18% Similarity=0.213 Sum_probs=132.4
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeC--CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMG--DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+.. .+..+ ...+.+||+||++++...+..+++.+|+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 3467889999999999999999999998875 67778776643 33333 3789999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....+++.+..+... +
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~ 160 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAESIG-----------------A 160 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTT-----------------C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------C
Confidence 999999999999999988888876542 35789999999999864 455667777665433 7
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 161 ~~~~~Sa~~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 161 IVVETSAKNAINIEELFQGISRQI 184 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHTC
T ss_pred EEEEEeCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999999876
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=181.99 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=128.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5689999999999999999999988775 4555655543 3455665 5899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 145 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVE 145 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeEEE
Confidence 99999999999999888887765556899999999999865 455667776665433 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|+++.+.+
T Consensus 146 ~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred eCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=184.51 Aligned_cols=156 Identities=16% Similarity=0.203 Sum_probs=128.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...+.+||+++|++|||||||++++.+..+. .+.+|.+.....+.+++ ..+.+||++|++++. +++.+|+++
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i 90 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVV 90 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEE
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEE
Confidence 4567899999999999999999999998876 46666554556777777 577889999998876 677899999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC----CCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF----DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|||++++.+|..+..|+..+.......+.|+++|+||+|+. .....++..+..... ...
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 154 (184)
T 3ihw_A 91 FVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDL----------------KRC 154 (184)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHT----------------TTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHc----------------CCC
Confidence 999999999999999999998776555689999999999984 245666666666432 126
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++|||++|.|++++|++|.+.+
T Consensus 155 ~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 155 TYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEecCCCCCCHHHHHHHHHHHH
Confidence 799999999999999999998764
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=184.60 Aligned_cols=159 Identities=16% Similarity=0.250 Sum_probs=133.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 456789999999999999999999988766 5556665543 4455566 45777999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 157 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPY 157 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhC-----------------CeE
Confidence 9999999999999999988887755557899999999999875 566677776665543 679
Q ss_pred EEeccc-cCCChHHHHHHHhhhc
Q psy2159 172 FMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
+++||+ +|.|++++|++|.+.+
T Consensus 158 ~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 158 IETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp EEEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEeccCCCCCCHHHHHHHHHHHH
Confidence 999999 9999999999998865
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=182.56 Aligned_cols=156 Identities=19% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC--EEEEEEEcCCCccchh-hHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii~ 94 (194)
.++|+++|++|||||||++++.+..+. ...++.......+..++ ..+.+||+||++++.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 368999999999999999999876654 23334444556666776 6788999999998876 67777889999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 144 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS-----------------CKHI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcC-----------------CcEE
Confidence 999999999999999999998766556899999999999864 566667666665544 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|+++.+.+
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~~i 165 (169)
T 3q85_A 145 ETSAALHHNTRELFEGAVRQI 165 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCccCCCHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.8e-31 Score=185.52 Aligned_cols=159 Identities=17% Similarity=0.245 Sum_probs=129.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC---EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD---IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 457789999999999999999999998876 566777644 45677766 799999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCC-CCCCc-EEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDA-LTDVP-ILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p-iiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+++|+|++++.++..+..|+..+..... ..+.| +++|+||+|+.+ ....++.....+...
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~---------------- 146 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENG---------------- 146 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT----------------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcC----------------
Confidence 9999999999889888888777755210 12445 899999999865 345566666654433
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 147 -~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (178)
T 2hxs_A 147 -FSSHFVSAKTGDSVFLCFQKVAAEI 171 (178)
T ss_dssp -CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -CcEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998865
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=185.35 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=130.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 5689999999999999999999977765 5666766654 4455666 6789999999999988888999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... .++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 147 (181)
T 3t5g_A 85 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLE 147 (181)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhC-----------------CcEEE
Confidence 99999999999999998887776667899999999999864 456677777766544 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 148 ~Sa~~~~~v~~l~~~l~~~~ 167 (181)
T 3t5g_A 148 SSAKENQTAVDVFRRIILEA 167 (181)
T ss_dssp CCTTSHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=185.27 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=132.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee---EEEeC-----------CEEEEEEEcCCCccchhhH
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE---ELSMG-----------DIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~d~~g~~~~~~~~ 82 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..+ ...+.+||+||++++...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 346789999999999999999999988775 56777776543 44444 3589999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....+++.+..+...
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------- 158 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYG--------- 158 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT---------
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC---------
Confidence 999999999999999999999999998888887765557899999999999865 455666666665433
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 159 --------~~~~~~Sa~~~~~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 159 --------IPYFETSAANGTNISHAIEMLLDLI 183 (195)
T ss_dssp --------CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-30 Score=179.90 Aligned_cols=156 Identities=20% Similarity=0.323 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4679999999999999999999988876 5667777553 4555655 589999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-----CCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-----ASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|+|++++.++.....|+..+.... ..+.|+++++||+|+.+. ...++......... +
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----------------~ 143 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-----------------L 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------C
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----------------C
Confidence 999999999999988888886643 367899999999998642 34444444443323 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 144 ~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 144 LFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp EEEECCTTTCTTHHHHHHHHHTTS
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999999876
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=185.78 Aligned_cols=160 Identities=19% Similarity=0.239 Sum_probs=125.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchh-hHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d 90 (194)
...+.++|+++|.+|||||||++++.+.... ...++.+ .....+.+++ ..+.+||++|++++.. ++..+++.+|
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d 98 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD 98 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence 3456789999999999999999999754432 2233333 3345566666 5789999999988765 7778889999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|++++.+|..+..|+..+.......+.|+++|+||+|+.+ ....++.....+...
T Consensus 99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~----------------- 161 (195)
T 3cbq_A 99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLS----------------- 161 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhC-----------------
Confidence 9999999999999999999998887654446899999999999975 355666666554432
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|+++.+.+
T Consensus 162 ~~~~e~Sa~~~~~v~~lf~~l~~~i 186 (195)
T 3cbq_A 162 CKHIETSAALHHNTRELFEGAVRQI 186 (195)
T ss_dssp CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998865
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=183.28 Aligned_cols=158 Identities=21% Similarity=0.283 Sum_probs=131.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 92 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 92 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 35689999999999999999999998876 5666766553 4455554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... +.++
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~ 155 (195)
T 1x3s_A 93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFI 155 (195)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcC-----------------CEEE
Confidence 9999999999999999888887665557899999999999965 345566666654433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~ 176 (195)
T 1x3s_A 156 EASAKTCDGVQCAFEELVEKI 176 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=181.09 Aligned_cols=159 Identities=19% Similarity=0.295 Sum_probs=131.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 3456789999999999999999999998876 4556666654 3455554 689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++.....|+..+.... .++.|+++|+||+|+.+ ....+++.+...... +
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~ 149 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQENG-----------------L 149 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHHcC-----------------C
Confidence 999999999988999998888887653 35889999999999965 345666766665433 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 150 FFMETSAKTATNVKEIFYEIARRL 173 (181)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998875
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=183.44 Aligned_cols=158 Identities=19% Similarity=0.333 Sum_probs=127.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.++++|+++|++|||||||++++.+..+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 45789999999999999999999988765 444454433 34455666 458889999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++......... +++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYG-----------------IPFIE 144 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999999999999998888766667899999999999976 345555555554433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 145 ~Sa~~g~gi~~l~~~l~~~~ 164 (189)
T 4dsu_A 145 TSAKTRQGVDDAFYTLVREI 164 (189)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=180.70 Aligned_cols=160 Identities=18% Similarity=0.261 Sum_probs=128.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 456789999999999999999999988775 5667776653 4556666 5899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+ ....+++.+.... ...
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~----------------~~~ 147 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD----------------NGD 147 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH----------------TTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh----------------cCC
Confidence 99999999988998888887776532 236789999999999864 4556666666541 123
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 148 YPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=184.65 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=133.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 91 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 91 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999988765 4556665543 4556666 589999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....+++....+... .+++
T Consensus 92 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 154 (206)
T 2bov_A 92 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNYV 154 (206)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999999988888765556899999999999865 455667776665433 6799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 155 ~~Sa~~g~gi~~l~~~l~~~i 175 (206)
T 2bov_A 155 ETSAKTRANVDKVFFDLMREI 175 (206)
T ss_dssp EECTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=187.43 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=125.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc-----------ccCCCcceeEE---Ee--CCEEEEEEEcCCCccchhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH-----------MPTLHPTSEEL---SM--GDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~-----------~~t~~~~~~~~---~~--~~~~~~~~d~~g~~~~~~~ 81 (194)
..+.++|+++|++|||||||++.+.+.....+ .+|.+.+.... .. ....+.+||+||++++...
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 34678999999999999999987776544442 23444333221 12 2368999999999999999
Q ss_pred HhhhhhcCCEEEEEEECC------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCC
Q psy2159 82 WRDYFPAVDAIVFIIDAS------DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTG 155 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~ 155 (194)
+..+++++|++++|+|++ +.+++..+..|+..+ .....+.|+++|+||+|+.+....+++.+.++...
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~--~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~---- 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEY--GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEG---- 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHT--TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTC----
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhh--ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcC----
Confidence 999999999999999999 445666666777666 23457899999999999998888889988887644
Q ss_pred CccCcccccCCcce-EEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQMRPM-ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+ +++++||++|.|++++|++|.+.+
T Consensus 165 -------------~~~~~~~Sa~~~~gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 -------------KFPVLEAVATEGKGVFETLKEVSRLV 190 (198)
T ss_dssp -------------CSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred -------------CceEEEEecCCCcCHHHHHHHHHHHH
Confidence 5 899999999999999999998764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=187.13 Aligned_cols=163 Identities=16% Similarity=0.232 Sum_probs=127.4
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhh
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFP 87 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~ 87 (194)
........+.++|+++|.+|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++
T Consensus 14 ~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 93 (194)
T 3reg_A 14 AGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA 93 (194)
T ss_dssp -------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT
T ss_pred cccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc
Confidence 334444567899999999999999999999998876 56677766543 345555 56799999999999999999999
Q ss_pred cCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCccc
Q psy2159 88 AVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++|++++|+|++++.++..+. .|+..+... .++.|+++|+||+|+.+ ....++.....+...
T Consensus 94 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----------- 160 (194)
T 3reg_A 94 DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG----------- 160 (194)
T ss_dssp TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT-----------
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC-----------
Confidence 999999999999999999874 455444332 36799999999999874 355666666665533
Q ss_pred ccCCcceE-EEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPME-LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~-~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. ++++||++|.|++++|++|.+.+
T Consensus 161 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 161 ------CVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp ------CSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------CCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 44 99999999999999999998864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=180.91 Aligned_cols=157 Identities=18% Similarity=0.276 Sum_probs=129.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
++++|+++|++|||||||++++.+..+. .+.+|.+.. ...+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4679999999999999999999988765 445555443 34556666 4699999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~~ 144 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEE
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhC-----------------CCEEE
Confidence 99999999999999988887765557899999999999864 344555555554433 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 145 ~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.8e-30 Score=181.92 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=131.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 356789999999999999999999998765 5566666554 3456666 57899999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..++......+.|+++|+||+|+.+ ....++......... +++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 148 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAY 148 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999999988886655557899999999999865 344555555544322 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 149 ~~~Sa~~~~gv~~l~~~l~~~~ 170 (181)
T 2fn4_A 149 FEASAKLRLNVDEAFEQLVRAV 170 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=180.60 Aligned_cols=159 Identities=19% Similarity=0.328 Sum_probs=123.8
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
...+.++|+++|++|+|||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 4567889999999999999999999998874 56677776653 345566 58999999999999999999999999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++++|+|++++.++..+..|+..+..... .+.|+++|+||+|+.+ ....++.....+...
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~----------------- 147 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQ-HDVALMLLGNKVDSAHERVVKREDGEKLAKEYG----------------- 147 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSC-TTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCcEEEEEECcccCcccccCHHHHHHHHHHcC-----------------
Confidence 99999999999889988888887765432 6789999999999975 345556655554433
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (180)
T 2g6b_A 148 LPFMETSAKTGLNVDLAFTAIAKEL 172 (180)
T ss_dssp CCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=188.43 Aligned_cols=158 Identities=18% Similarity=0.223 Sum_probs=127.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|.+|||||||++++.+..+. .+.+|.+... ..+.. ....+.+||+||++++...+..+++.+|++++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL 101 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence 47889999999999999999999998876 4556666543 22222 34789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... .+++
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 164 (201)
T 3oes_A 102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWG-----------------ATFM 164 (201)
T ss_dssp EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999999999988776667899999999999864 445556655555433 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 165 ~~Sa~~~~~v~~l~~~l~~~i 185 (201)
T 3oes_A 165 ESSARENQLTQGIFTKVIQEI 185 (201)
T ss_dssp ECCTTCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.5e-30 Score=182.15 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=130.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 46789999999999999999999988876 456666644 34566666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 149 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENE-----------------LMF 149 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999988887775532 36789999999999864 455566666654433 789
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|+++.+.+
T Consensus 150 ~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 150 LETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEecCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=184.90 Aligned_cols=176 Identities=22% Similarity=0.218 Sum_probs=126.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC---CEEEEEEEcCCCccchh-hHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQARR-VWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+....++.......+.++ +..+.+||+||++++.. .+..+++.+|+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i 83 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVV 83 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEE
Confidence 3567899999999999999999999988876666666666667776 57899999999999988 7888899999999
Q ss_pred EEEECCCCC-ChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCc------------------
Q psy2159 94 FIIDASDRS-RFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLYGL------------------ 152 (194)
Q Consensus 94 ~v~d~~~~~-~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~------------------ 152 (194)
+|+|+++.. ++.....+|..++.. ....+.|+++|+||+|+......+++.+.+.....
T Consensus 84 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~ 163 (214)
T 2fh5_B 84 FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSST 163 (214)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCcc
Confidence 999998832 355555666655433 22357899999999999876666665554432211
Q ss_pred ----cCCCccCcccccCCcceEEEEeccccC------CChHHHHHHHhhhc
Q psy2159 153 ----TTGKEFTPREILQMRPMELFMCSVLKR------QGFGNGFRWLANYI 193 (194)
Q Consensus 153 ----~~~~~~~~~~~~~~~~~~~~~~Sa~~~------~~v~~l~~~l~~~i 193 (194)
...++..+........+.|++|||++| .||+++|++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 164 APAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp -CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 011111112111112678999999999 99999999998764
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=181.94 Aligned_cols=159 Identities=18% Similarity=0.254 Sum_probs=132.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 356789999999999999999999988775 4555555543 3455666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.......+.|+++|+||+|+.+ ....+++.+..+... +++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 157 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWN-----------------VNY 157 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999999888887765556899999999999865 455667777665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 158 ~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 158 VETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-30 Score=182.62 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=129.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccch-hhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 456789999999999999999999988876 4666666543 4566666 689999999999988 788889999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++......... +
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~ 159 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------M 159 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcC-----------------C
Confidence 999999999999999999988887765567899999999999865 345555555554333 5
Q ss_pred EEEEeccccC---CChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKR---QGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~---~~v~~l~~~l~~~i 193 (194)
+++++||++| .|++++|++|.+.+
T Consensus 160 ~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 160 PLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred EEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 7999999999 99999999998865
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=182.54 Aligned_cols=155 Identities=21% Similarity=0.264 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC-------------------------------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD------------------------------- 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~------------------------------- 64 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 46789999999999999999999998876 5666766543 3344443
Q ss_pred --------EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 --------IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 --------~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.+||+||++++...+..+++.+|++++|+|++++.++.....|+..+... .+.|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~---~~~piilv~NK~D~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHH---SCCEEEEEEECTTCC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhh---CCCcEEEEEECCCccc
Confidence 78999999999999999999999999999999999998899988888888765 2489999999999432
Q ss_pred -CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 -AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++.+.++... ++++++||++|.|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~-----------------~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 162 FQVDILEVQKYAQDNN-----------------LLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp CCSCHHHHHHHHHHTT-----------------CEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcC-----------------CcEEEEecCCCCCHHHHHHHHHHHH
Confidence 456677777776543 6899999999999999999998764
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-30 Score=182.03 Aligned_cols=156 Identities=19% Similarity=0.324 Sum_probs=128.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 46689999999999999999999998775 455555543 45667777 78999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+ ....++......... .++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQMG-----------------IQL 147 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999988888886643 5799999999999865 344555555554433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 148 FETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=179.03 Aligned_cols=158 Identities=19% Similarity=0.260 Sum_probs=131.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 346789999999999999999999998875 4566666553 4455555 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....+++.+..+... ++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 153 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LL 153 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999888887776542 35789999999999864 455667776665433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 154 ~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 154 FLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998865
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=179.15 Aligned_cols=154 Identities=13% Similarity=0.163 Sum_probs=122.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.++++|+++|++|||||||++++.+..+..+.||.+... ..+..++ ..+.+||+||+++ ..+++++|++++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 467899999999999999999999998887778877653 4456666 5789999999987 4567889999999
Q ss_pred EECCCCCChHHHHHHHHHHHh--CCCCCCCcEEEEeeCCCCC----CCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLA--DDALTDVPILILGNKIDIF----DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~--~~~~~~~piiiv~nK~D~~----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+|++++.++..+..|+..+.. ....++.|+++|+||+|+. .....++..+..... ..+
T Consensus 80 ~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~----------------~~~ 143 (178)
T 2iwr_A 80 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADM----------------KRC 143 (178)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHH----------------SSE
T ss_pred EECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhh----------------cCC
Confidence 999999999999886544432 2233679999999999984 245566666655432 127
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|+++.+.+
T Consensus 144 ~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 144 SYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEEeccccCCHHHHHHHHHHHH
Confidence 899999999999999999998764
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=182.16 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=123.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 356789999999999999999999988875 5667777654 3455554 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+ ....++..+..+... ++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AK 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------Ce
Confidence 9999999998899988887776543 225789999999999865 455666666665433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 145 HYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEEecCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=185.60 Aligned_cols=157 Identities=24% Similarity=0.328 Sum_probs=103.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 45789999999999999999999988765 556666654 34566777 78999999999999988889999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ..++.|+++|+||+|+.+ ....++.....+... +++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 147 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IKF 147 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888887654 235789999999999975 345666666665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 148 METSAKANINVENAFFTLARDI 169 (183)
T ss_dssp EECCC---CCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=184.55 Aligned_cols=157 Identities=18% Similarity=0.226 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988876 5667766543 4566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 165 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYY 165 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999888888776542 35789999999999864 445556655554322 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 166 ~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 166 LETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-30 Score=181.02 Aligned_cols=156 Identities=19% Similarity=0.318 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45789999999999999999999998775 5667766553 4555555 58999999999999888889999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... .+.|+++|+||+|+.+ ....+++....+... .++
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 143 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRF 143 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999988999888888876643 6789999999999865 445666666665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 144 ~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 144 YRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=178.50 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=129.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 346789999999999999999999998865 5667777654 3455555 6899999999999999989999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++.....|+..+... ..+..|+++|+||+|+.+ ....++.....+... .+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 144 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AI 144 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcC-----------------CE
Confidence 9999999998898888887777653 346789999999999865 344555555554333 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 145 ~~~~Sa~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 145 FVETSAKNAININELFIEISRRI 167 (170)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999875
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=181.39 Aligned_cols=157 Identities=21% Similarity=0.312 Sum_probs=130.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.++.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 45689999999999999999999998876 455666544 45666776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... .++
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 155 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPF 155 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHHcC-----------------CcE
Confidence 9999999999999988887775542 35789999999999875 344455555555433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 156 ~~~Sa~~g~gv~~l~~~l~~~i 177 (196)
T 3tkl_A 156 LETSAKNATNVEQSFMTMAAEI 177 (196)
T ss_dssp EEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998865
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=182.60 Aligned_cols=157 Identities=20% Similarity=0.298 Sum_probs=129.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45689999999999999999999998875 5667776554 3445554 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+... .++
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEF 147 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCC-----------------CeE
Confidence 999999998999888888877654 235789999999999976 345556666555433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 148 FEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=188.23 Aligned_cols=157 Identities=20% Similarity=0.194 Sum_probs=126.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|.+|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||++|++++...+..+++.+|+++
T Consensus 24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 346789999999999999999999998876 46777776653 233333 78999999999999999999999999999
Q ss_pred EEEECCCCCChHH-HHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------------CCCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPE-SKYELDNLLADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--------------~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++.. ...|+..+... .++.|+++|+||+|+.+ ....++.....+...
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------- 174 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG------- 174 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT-------
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC-------
Confidence 9999999999998 56777777554 26899999999999964 355566666655433
Q ss_pred CcccccCCcce-EEEEeccccCCC-hHHHHHHHhhhc
Q psy2159 159 TPREILQMRPM-ELFMCSVLKRQG-FGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~-~~~~~Sa~~~~~-v~~l~~~l~~~i 193 (194)
+ .+++|||++|.| ++++|+++.+.+
T Consensus 175 ----------~~~~~e~SA~~g~g~v~~lf~~l~~~~ 201 (214)
T 3q3j_B 175 ----------AEIYLEGSAFTSEKSIHSIFRTASMLC 201 (214)
T ss_dssp ----------CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ----------CCEEEEeccCCCcccHHHHHHHHHHHH
Confidence 5 899999999998 999999998754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.3e-30 Score=183.01 Aligned_cols=157 Identities=20% Similarity=0.253 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||+++ ...+..+++.+|++++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 56789999999999999999999998876 55666665543 355555 6799999999998 7778888999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+.......+.|+++|+||+|+.+ ....++.....+... ++++
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 167 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFY 167 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 999999999999988888887654456899999999999865 455566666554433 6899
Q ss_pred EeccccCC-ChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
++||++|. |++++|++|.+.+
T Consensus 168 ~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 168 ECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ECCTTTCTTCHHHHHHHHHHHH
T ss_pred EECCCcCCcCHHHHHHHHHHHH
Confidence 99999999 9999999998764
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-30 Score=184.70 Aligned_cols=157 Identities=17% Similarity=0.268 Sum_probs=129.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEe--CCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSM--GDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~--~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+||+++|++|||||||++++.+..+. .+.+|.+.+.. .+.. .+..+.+||+||++++...+..+++.+|+++
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 100 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFI 100 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEE
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEE
Confidence 46789999999999999999999998765 45566665543 3333 3489999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+... +++
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 162 (191)
T 3dz8_A 101 LMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLG-----------------FDF 162 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888877653 346799999999999865 355556665555433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 163 ~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 163 FEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998864
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=182.70 Aligned_cols=157 Identities=22% Similarity=0.327 Sum_probs=130.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 45689999999999999999999998876 4666666554 4566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (206)
T 2bcg_Y 86 IVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPF 147 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999988888776542 35789999999999976 345556665554433 679
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 148 LETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=180.62 Aligned_cols=156 Identities=20% Similarity=0.297 Sum_probs=128.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4579999999999999999999998875 5667776654 3444454 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++..+..+... .+++
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 162 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLG-----------------FEFF 162 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC-----------------CeEE
Confidence 99999998999988888877654 245789999999999865 344556666655433 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 163 ~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 163 EASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=181.15 Aligned_cols=158 Identities=18% Similarity=0.286 Sum_probs=129.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345689999999999999999999998876 4566666544 3344444 6899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.. ....++......... +.
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~ 163 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNG-----------------LL 163 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CE
Confidence 9999999998898888888887654 346799999999999865 345566666554433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 164 FLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=181.25 Aligned_cols=158 Identities=20% Similarity=0.261 Sum_probs=127.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 346789999999999999999999998876 455565554 34566666 6899999999999999888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ....++......... +.
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 159 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-----------------LI 159 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999988888876542 35799999999999865 455666666654433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 160 ~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 160 FMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-30 Score=184.96 Aligned_cols=158 Identities=19% Similarity=0.244 Sum_probs=123.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 356789999999999999999999988775 455666544 45566676 7899999999999888888899999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++.....+... +.
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~ 163 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQENE-----------------LM 163 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CE
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHHcC-----------------CE
Confidence 99999999999999998888876542 26799999999999864 455566666654433 68
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 164 FLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp EEEECTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=178.87 Aligned_cols=157 Identities=22% Similarity=0.291 Sum_probs=129.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.++++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45689999999999999999999988776 455666543 35566666 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... +++
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~ 153 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELN-----------------VMF 153 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcC-----------------CeE
Confidence 9999999888999988888876542 35789999999999864 344556665554433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 154 ~~~Sa~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 154 IETSAKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp EEEBTTTTBSHHHHHHHHHHTC
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998875
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-30 Score=187.88 Aligned_cols=159 Identities=21% Similarity=0.318 Sum_probs=129.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC------------CEEEEEEEcCCCccchhhH
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG------------DIVFTTHDLGGHVQARRVW 82 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~------------~~~~~~~d~~g~~~~~~~~ 82 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+. ..+.++ ...+.+||+||++++...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 356789999999999999999999998775 4556665543 234443 4689999999999999999
Q ss_pred hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCc
Q psy2159 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 83 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.. ....++.....+...
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~--------- 172 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG--------- 172 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT---------
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCC---------
Confidence 999999999999999999988988888887775554447899999999999865 445566666665433
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 173 --------~~~~~~Sa~~g~gi~~l~~~l~~~i 197 (217)
T 2f7s_A 173 --------IPYFETSAATGQNVEKAVETLLDLI 197 (217)
T ss_dssp --------CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred --------CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=181.33 Aligned_cols=156 Identities=22% Similarity=0.300 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 96 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 96 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEE
Confidence 5689999999999999999999998775 5667776654 3555665 7899999999999999999999999999999
Q ss_pred EECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccCc
Q psy2159 96 IDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 96 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
+|++++.++.... .|+..+... .++.|+++|+||+|+.+. ...++..+..+...
T Consensus 97 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------- 165 (194)
T 2atx_A 97 FSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--------- 165 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT---------
T ss_pred EECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC---------
Confidence 9999999999887 566666553 258999999999999763 22333333332211
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++++||++|.|++++|++|.+.+
T Consensus 166 -------~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 -------ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp -------CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 13799999999999999999998764
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=182.26 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=123.1
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
++....++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+
T Consensus 20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 99 (201)
T 2gco_A 20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV 99 (201)
T ss_dssp --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence 35567889999999999999999999998876 4566666654 4566666 589999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCC
Q psy2159 92 IVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~ 156 (194)
+++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.. ..++.....+..
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------ 171 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRI------ 171 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHT------
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhC------
Confidence 99999999998898884 454444332 2579999999999997642 122222222111
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++||++|.|++++|++|.+.+
T Consensus 172 ----------~~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 172 ----------SAFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp ----------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------CCcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 123799999999999999999998754
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-30 Score=178.65 Aligned_cols=156 Identities=19% Similarity=0.301 Sum_probs=123.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 4579999999999999999999988875 5666666544 4555555 689999999999999888889999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.+ ....++.....+... +++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 143 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIE 143 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCCcCccCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999888988888888776542 35789999999999954 345555555554433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 144 ~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 144 SSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=174.33 Aligned_cols=157 Identities=18% Similarity=0.317 Sum_probs=127.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||+.++...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3578999999999999999999988765 4455555442 3455555 5689999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+|++++.++.....|+..+.......+.|+++++||+|+.+ ....++..+..+... ++++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~~ 144 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYG-----------------IPYIET 144 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEEE
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcC-----------------CeEEEe
Confidence 99999988888888888876654445899999999999876 445556666554433 579999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.|++++|++|.+.+
T Consensus 145 Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-29 Score=181.66 Aligned_cols=158 Identities=22% Similarity=0.265 Sum_probs=119.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 104 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGV 104 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEE
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEE
Confidence 356789999999999999999999998875 566666654 34566666 6799999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC--------CCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF--------DAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~--------~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+. .....++.........
T Consensus 105 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~------------- 170 (199)
T 2p5s_A 105 LLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG------------- 170 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-------------
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-------------
Confidence 9999999999999988887766543 23578999999999985 2334445555444323
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 171 ----~~~~~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 171 ----ALFCETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ----CEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=177.37 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=124.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 4579999999999999999999998775 56666665543 334444 5799999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|++++.++.....|+..+... ...++.|+++|+||+|+.+ ....++......... ++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 144 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFM 144 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC-----------------CeEE
Confidence 9999988888888887776553 2235789999999999865 344444444443322 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 145 ~~Sa~~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 145 ETSAKLNHNVKELFQELLNLE 165 (172)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999875
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-29 Score=178.23 Aligned_cols=160 Identities=24% Similarity=0.337 Sum_probs=116.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeC---CEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMG---DIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..+ ...+.+||+||++++...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 356789999999999999999999998865 556666544 3445544 3689999999999999999999999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCC---CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+++|+|++++.++.....|+..+.... ...+.|+++|+||+|+.. ....++.....+.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~---------------- 148 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS---------------- 148 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH----------------
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh----------------
Confidence 999999999999999988888776542 236789999999999854 2345555555431
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 149 LGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp TTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 1236799999999999999999998764
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-30 Score=186.50 Aligned_cols=158 Identities=15% Similarity=0.175 Sum_probs=99.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCC--cceeEEEeC----CEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLH--PTSEELSMG----DIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
.+.++|+++|++|||||||++++.+. .+. .+.+|.+ .....+.++ ...+.+||+||++++...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 35679999999999999999999988 655 5667776 345566776 46899999999999999999999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC---CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
|++++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ....+++.+..+...
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~------------- 164 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNT------------- 164 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTT-------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcC-------------
Confidence 999999999999999999988888876543 25799999999999965 455667777665533
Q ss_pred CCcceEEEEecccc-CCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLK-RQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~-~~~v~~l~~~l~~~i 193 (194)
++++++||++ |.|++++|++|.+.+
T Consensus 165 ----~~~~~~Sa~~~~~gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 165 ----LDFFDVSANPPGKDADAPFLSIATTF 190 (208)
T ss_dssp ----CEEEECCC-------CHHHHHHHHHH
T ss_pred ----CEEEEeccCCCCcCHHHHHHHHHHHH
Confidence 7899999999 999999999998754
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-29 Score=180.61 Aligned_cols=159 Identities=15% Similarity=0.192 Sum_probs=127.5
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+.. .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 456789999999999999999999998776 45666665443 334444 58999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++.....|+..+.... ...+.|+++|+||+|+.+ ....++......... +++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~ 147 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWK-----------------CAF 147 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhC-----------------CeE
Confidence 9999999888888887776665432 135789999999999976 344555555554333 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 148 ~~~Sa~~~~gi~~l~~~l~~~~ 169 (199)
T 2gf0_A 148 METSAKMNYNVKELFQELLTLE 169 (199)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998865
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=183.53 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=120.1
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhh
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~ 85 (194)
..+..+....+.++|+++|.+|||||||++++....+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+
T Consensus 19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 98 (204)
T 4gzl_A 19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLS 98 (204)
T ss_dssp -----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGG
T ss_pred hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 34455556678899999999999999999999988776 5556665443 3444555 567799999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhccc
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLY 150 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~ 150 (194)
++.+|++++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.... ..++.....+.
T Consensus 99 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 175 (204)
T 4gzl_A 99 YPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE- 175 (204)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH-
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHh-
Confidence 99999999999999999999987 5555554432 689999999999987632 22222222221
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|++++|++|.+.+
T Consensus 176 ---------------~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 176 ---------------IGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp ---------------TTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred ---------------cCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 1224699999999999999999998864
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-30 Score=182.00 Aligned_cols=159 Identities=22% Similarity=0.263 Sum_probs=125.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++..+ ..+++.+|++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 4467789999999999999999999998865 5677777654 3344555 67899999999988775 5688999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCC--CCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDA--LTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.. ....++..+..+...
T Consensus 96 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~----------------- 158 (187)
T 3c5c_A 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFG----------------- 158 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcC-----------------
Confidence 999999999999999988888765421 25789999999999864 455666666665533
Q ss_pred eEEEEecc-ccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSV-LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa-~~~~~v~~l~~~l~~~i 193 (194)
++++++|| ++|.|++++|++|.+.+
T Consensus 159 ~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 CLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred CcEEEEeecCccccHHHHHHHHHHHH
Confidence 68999999 89999999999998765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=179.70 Aligned_cols=158 Identities=17% Similarity=0.246 Sum_probs=123.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.+ ...+.+++ ..+.+||+||++++...+..+++.+|+++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35678999999999999999999988775 456666544 45566666 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++.....+.. ....+
T Consensus 104 lV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~----------------~~~~~ 166 (192)
T 2il1_A 104 LVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQI----------------TGMRF 166 (192)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTS----------------TTCEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhc----------------CCCeE
Confidence 999999998999888877666443 335799999999999865 34455555555331 23689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 167 ~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 167 CEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-29 Score=184.99 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=124.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45689999999999999999999998876 456666654 34566776 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++.....+... +++
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 152 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQ-----------------LLF 152 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHHcC-----------------CEE
Confidence 9999999999999988888876542 35789999999999865 445566666654433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 153 ~~~Sa~~~~gi~~l~~~l~~~i 174 (223)
T 3cpj_B 153 TETSALNSENVDKAFEELINTI 174 (223)
T ss_dssp EECCCC-CCCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=180.22 Aligned_cols=158 Identities=16% Similarity=0.224 Sum_probs=120.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC--CccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT--AQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDA 91 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~--~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 91 (194)
.+.+||+++|.+|||||||++++.+... ....++.+.+ ...+.+++ ..+.+||++|+.. +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 4568999999999999999999996443 3333444444 34566776 4678999999886 45566777888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|||+++..+|..+..|+..+.......+.|+++|+||+|+.+ ....++......... +
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~-----------------~ 177 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------C 177 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcC-----------------C
Confidence 999999999999999998888776543345799999999999864 344444444333222 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++|||++|.||+++|++|.+.+
T Consensus 178 ~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 178 KFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998764
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.1e-29 Score=179.91 Aligned_cols=159 Identities=14% Similarity=0.200 Sum_probs=118.5
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..++.++|++
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 3467889999999999999999999988765 5666666544 3456666 5778999999999999989999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCc
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~ 157 (194)
++|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+. ...++.....+...
T Consensus 96 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~------ 167 (201)
T 2q3h_A 96 LLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK------ 167 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT------
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC------
Confidence 9999999999999887 5666665432 48999999999998642 23333333332211
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++|||++|.|++++|++|.+.+
T Consensus 168 ----------~~~~~~~Sa~~g~gi~~l~~~l~~~~ 193 (201)
T 2q3h_A 168 ----------AASYIECSALTQKNLKEVFDAAIVAG 193 (201)
T ss_dssp ----------CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------CcEEEEEecCCCCCHHHHHHHHHHHH
Confidence 24899999999999999999998764
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=182.73 Aligned_cols=159 Identities=17% Similarity=0.223 Sum_probs=104.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 3457789999999999999999999988775 4556655443 3455555 5899999999999999999999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCc
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~ 157 (194)
++|+|++++.++..+. .|+..+... .++.|+++|+||+|+.... ..++.....+..
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------- 180 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSV------- 180 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHT-------
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhc-------
Confidence 9999999999999887 566555443 2578999999999997642 222222222221
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...++++|||++|.|++++|++|.+.+
T Consensus 181 ---------~~~~~~~~SA~~g~gi~el~~~l~~~~ 207 (214)
T 2j1l_A 181 ---------GAVAYLECSARLHDNVHAVFQEAAEVA 207 (214)
T ss_dssp ---------TCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------CCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 124899999999999999999998764
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=180.58 Aligned_cols=158 Identities=19% Similarity=0.310 Sum_probs=127.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|||||||++++.+..+. .+.+|.+.+ ...+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 356789999999999999999999988875 566666654 35566777 6899999999999998888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.. ....++......... +++
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~ 158 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPF 158 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHT-----------------CCE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCcccccCHHHHHHHHHHcC-----------------CEE
Confidence 99999999888988888888776542 24789999999999854 344555555554333 579
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 159 ~~~Sa~~~~gi~~l~~~l~~~~ 180 (213)
T 3cph_A 159 IESSAKNDDNVNEIFFTLAKLI 180 (213)
T ss_dssp EECBTTTTBSSHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.4e-29 Score=177.27 Aligned_cols=157 Identities=17% Similarity=0.261 Sum_probs=121.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 45789999999999999999999988775 5566666543 3455555 567799999999999998899999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--------------CHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA--------------SEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--------------~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.......
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------- 150 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE---------- 150 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH----------
T ss_pred EEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh----------
Confidence 99999998898887 5655554432 489999999999986531 22222222221
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ..++++++||++|.|++++|+++.+.+
T Consensus 151 ----~--~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (186)
T 1mh1_A 151 ----I--GAVKYLECSALTQRGLKTVFDEAIRAV 178 (186)
T ss_dssp ----T--TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----c--CCcEEEEecCCCccCHHHHHHHHHHHH
Confidence 1 124899999999999999999998865
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=180.26 Aligned_cols=160 Identities=20% Similarity=0.294 Sum_probs=127.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|++|+|||||++++.+..+. .+.+|.+.+. ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 356789999999999999999999998875 5666666543 3444554 6899999999999998888999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCC---CCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDA---LTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++|+|++++.++..+..|+..+..... ..+.|+++|+||+|+.+ ....+++...... ...
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~ 148 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----------------KNN 148 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------TTS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHh----------------cCC
Confidence 999999999889998888877765421 24789999999999975 3445555555531 123
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 149 IPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp CCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999998764
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=176.85 Aligned_cols=158 Identities=18% Similarity=0.318 Sum_probs=119.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.++++|+++|.+|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 98 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEE
Confidence 46689999999999999999999988765 3445554433 3455665 569999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
|+|+++..++..+..|+..+.......+.|+++|+||+|+.+ ....+++.+..+... +++++
T Consensus 99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~~ 161 (190)
T 3con_A 99 VFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYG-----------------IPFIE 161 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcC-----------------CeEEE
Confidence 999999988998888887776654445799999999999876 455666666665433 57999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 162 ~Sa~~~~gi~~l~~~l~~~~ 181 (190)
T 3con_A 162 TSAKTRQGVEDAFYTLVREI 181 (190)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-29 Score=181.98 Aligned_cols=157 Identities=17% Similarity=0.249 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 46789999999999999999999988876 56677776543 445555 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----------CHHHHHhhhcccCccCCCccCcccc
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA----------SEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----------~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.........
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~------------ 152 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG------------ 152 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT------------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC------------
Confidence 99999999999887 5666665432 489999999999986531 3444444443221
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 153 ----~~~~~~~Sa~~g~gi~~l~~~l~~~~ 178 (212)
T 2j0v_A 153 ----AAAYIECSSKTQQNVKAVFDTAIKVV 178 (212)
T ss_dssp ----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----CceEEEccCCCCCCHHHHHHHHHHHH
Confidence 14799999999999999999998764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.96 E-value=4.2e-30 Score=187.88 Aligned_cols=157 Identities=20% Similarity=0.313 Sum_probs=126.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEE--EeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEEL--SMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~--~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
..+.++|+++|.+|||||||++++..+.+. .+.+|.+.+.... ..++ ..+.+||+||++++...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 457789999999999999999996665544 5677887765443 3333 7899999999999999889999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+....... ..+.++
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~ 152 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQYY 152 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGCCHHHH-----------------HTCEEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHHHHHHH-----------------cCCEEE
Confidence 99999999999999999888887653 58899999999999764333222222222 236899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||++|.|++++|++|.+.+
T Consensus 153 ~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 153 DISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp ECBGGGTBTTTHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=9e-29 Score=179.14 Aligned_cols=173 Identities=16% Similarity=0.214 Sum_probs=119.1
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+....++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 3456789999999999999999999998876 4556665544 3456666 6899999999999999889999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+....+........+...... ....+.+
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~ 176 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV--RIQAYDY 176 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH--HTTCSEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH--hcCCCEE
Confidence 9999999988888884 555555432 2589999999999986532111111111000000000000000 1112379
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i 198 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAA 198 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-29 Score=176.96 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=122.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+. .+.||.+... ..+..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 56789999999999999999999998876 4667766554 2344444 689999999999999999999999999999
Q ss_pred EEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccC
Q psy2159 95 IIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 95 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
|+|++++.++..+ ..|+..+... .++.|+++|+||+|+.++ ...++..+..+..
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------- 153 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI--------- 153 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH---------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHc---------
Confidence 9999999999888 4566655443 257999999999998642 3334444433221
Q ss_pred cccccCCcceEEEEeccc-cCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
...++++|||+ +|.|++++|+++.+.+
T Consensus 154 -------~~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 -------GAATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp -------TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred -------CCcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 12579999998 6899999999998764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-29 Score=178.09 Aligned_cols=157 Identities=17% Similarity=0.243 Sum_probs=112.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.++|+++|++|+|||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++++|++++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 46789999999999999999999988765 45566554332 233333 567799999999999999999999999999
Q ss_pred EEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC------------CHHHHHhhhcccCccCCCccCcc
Q psy2159 95 IIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA------------SEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 95 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+.. ..++.....+...
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------- 153 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIG---------- 153 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHT----------
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcC----------
Confidence 99999999999887 4665554432 479999999999986531 2333333332211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 154 ------~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 154 ------APAYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp ------CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 14799999999999999999998764
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=181.25 Aligned_cols=158 Identities=20% Similarity=0.252 Sum_probs=126.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe---CC--EEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM---GD--IVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~---~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
....++|+++|.+|||||||++++.+..+. .+.+|.+........ ++ ..+.+||+||++++...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 356789999999999999999999987766 456777765544333 22 789999999999999888899999999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|+|+++..++.....|+..+.... ..+.|+++|+||+|+.+ ....++......... +
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------------~ 149 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN-----------------Y 149 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCC-----------------C
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcC-----------------C
Confidence 999999999999999888877775542 24589999999999876 344555555554433 6
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|++++|++|.+.+
T Consensus 150 ~~~~~Sa~~g~gv~~l~~~l~~~~ 173 (218)
T 4djt_A 150 EYFEISAKTAHNFGLPFLHLARIF 173 (218)
T ss_dssp EEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred cEEEEecCCCCCHHHHHHHHHHHH
Confidence 899999999999999999998864
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=178.21 Aligned_cols=158 Identities=19% Similarity=0.223 Sum_probs=122.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....++|+++|++|||||||++++.+..+. .+.+|.+.... .+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 356789999999999999999999998876 45677665542 344444 78999999999999999899999999999
Q ss_pred EEEECCCCCChHHH-HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPES-KYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++..+ ..|+..+... .++.|+++|+||+|+.++ ...++.....+..
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 174 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI-------- 174 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH--------
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc--------
Confidence 99999999999988 5666666443 257999999999998642 3333333333221
Q ss_pred CcccccCCcceEEEEeccc-cCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVL-KRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~-~~~~v~~l~~~l~~~i 193 (194)
+ ...+++|||+ +|.|++++|++|.+.+
T Consensus 175 ------~--~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 175 ------G--AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp ------T--CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred ------C--CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 1 2579999999 6899999999998753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=173.14 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=116.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--CCccccCCCcc--eeEEEeCC--EEEEEEEcCCCcc-chhhHhhhhhcCCE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--TAQHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQ-ARRVWRDYFPAVDA 91 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~~~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~-~~~~~~~~~~~~d~ 91 (194)
.+.++|+++|.+|||||||++++.+.. +....++.+.+ ...+.+++ ..+.+||++|+.. ...+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 456899999999999999999999633 33323334443 34566776 4678899999876 44566777888999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++|||+++..+|.....|+..+.......+.|+++|+||+|+.. ....++......... .
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~-----------------~ 146 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD-----------------X 146 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------C
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhC-----------------C
Confidence 999999999999999988887776543446799999999999864 344444433332222 5
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++|||++|.||+++|+++.+.+
T Consensus 147 ~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 147 KFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ceEEeccccCCCHHHHHHHHHHHH
Confidence 799999999999999999998764
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=168.92 Aligned_cols=163 Identities=20% Similarity=0.235 Sum_probs=122.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
+..+..+|+++|++|||||||++++.+..+. .+.+ |.......+..++..+.+||+||++++...+..++..+|+++
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 4568899999999999999999999998776 2333 344455678888999999999999999988888899999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+|++++.. ......+..+.. .+.|+++|+||+|+.+. ..+++...++... .... ......++++
T Consensus 84 ~v~d~~~~~~-~~~~~~l~~~~~----~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~ 149 (178)
T 2lkc_A 84 LVVAADDGVM-PQTVEAINHAKA----ANVPIIVAINKMDKPEA-NPDRVMQELMEYN-------LVPE-EWGGDTIFCK 149 (178)
T ss_dssp EEEETTCCCC-HHHHHHHHHHGG----GSCCEEEEEETTTSSCS-CHHHHHHHHTTTT-------CCBT-TTTSSEEEEE
T ss_pred EEEECCCCCc-HHHHHHHHHHHh----CCCCEEEEEECccCCcC-CHHHHHHHHHhcC-------cChh-HcCCcccEEE
Confidence 9999988543 333333433322 57899999999999764 3455555543322 0000 0012368999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||++|.|++++|++|.+.+
T Consensus 150 ~Sa~~~~gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 150 LSAKTKEGLDHLLEMILLVS 169 (178)
T ss_dssp CCSSSSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHhh
Confidence 99999999999999998764
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-28 Score=174.20 Aligned_cols=165 Identities=13% Similarity=0.225 Sum_probs=112.6
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEE--e---CCEEEEEEEcCCCccchhhH---hhhhhc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELS--M---GDIVFTTHDLGGHVQARRVW---RDYFPA 88 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~--~---~~~~~~~~d~~g~~~~~~~~---~~~~~~ 88 (194)
...+.+||+++|.+|||||||++++.+........+.+.+...+. . ....+.+||+||++++.... ..++++
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 346789999999999999999999887544443333333333222 2 33799999999999987766 788999
Q ss_pred CCEEEEEEECCCC--CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCccCccc
Q psy2159 89 VDAIVFIIDASDR--SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 89 ~d~ii~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+|++++|+|+++. +++.....|+..+.. ..++.|+++|+||+|+.++.. ..++........ ..
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~---------~~ 164 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL---------AD 164 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH---------HH
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH---------HH
Confidence 9999999999997 445555556665532 236899999999999865211 111111111000 00
Q ss_pred -ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 -ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 -~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+.+++|||++ .|++++|+.+.+.+
T Consensus 165 ~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 165 AGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp TTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred hhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 0113347899999999 99999999998865
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.3e-30 Score=183.47 Aligned_cols=157 Identities=22% Similarity=0.313 Sum_probs=117.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCC--cceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLH--PTSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.++|+++|++|||||||++++.+..+. .+.+|.+ .....+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 35689999999999999999999988776 3444444 4456667777 68999999999999998899999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++......... +++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 172 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLG-----------------IPF 172 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTT-----------------CCB
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcC-----------------CeE
Confidence 999999999999998888877543 3457999999999998652 22223333332222 578
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 173 ~~vSA~~g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 173 LETSAKNATNVEQSFMTMAAEI 194 (199)
T ss_dssp CCCCC---HHHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-27 Score=163.99 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=108.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc-------chhhHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ-------ARRVWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~~~~~~d 90 (194)
.+|+++|++|+|||||++++.+..+.. ...|.......+..++..+.+||+||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 489999999999999999999887542 22234445567778889999999999887 3455667788999
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++++|+|+++..+ ....++..++.. .+.|+++|+||+|+.+. .+++.+.. . .+ ..+
T Consensus 82 ~~i~v~d~~~~~~--~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~-~--------------~~--~~~ 137 (161)
T 2dyk_A 82 VVLFAVDGRAELT--QADYEVAEYLRR---KGKPVILVATKVDDPKH--ELYLGPLY-G--------------LG--FGD 137 (161)
T ss_dssp EEEEEEESSSCCC--HHHHHHHHHHHH---HTCCEEEEEECCCSGGG--GGGCGGGG-G--------------GS--SCS
T ss_pred EEEEEEECCCccc--HhHHHHHHHHHh---cCCCEEEEEECcccccc--hHhHHHHH-h--------------CC--CCC
Confidence 9999999998543 333445555443 57899999999998653 11111111 1 11 126
Q ss_pred EEEeccccCCChHHHHHHHhhhcC
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++++||++|.|++++|+++.+.++
T Consensus 138 ~~~~Sa~~~~gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 138 PIPTSSEHARGLEELLEAIWERLP 161 (161)
T ss_dssp CEECBTTTTBSHHHHHHHHHHHCC
T ss_pred eEEEecccCCChHHHHHHHHHhCc
Confidence 899999999999999999998764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-27 Score=164.54 Aligned_cols=149 Identities=22% Similarity=0.310 Sum_probs=109.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--c
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--A 88 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~ 88 (194)
++.+++++|++|||||||++++.+..+. ...| |.......+.+++..+.+|||||+.++. .....++. +
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3578999999999999999999987653 2223 4455566778888999999999998764 33455554 7
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+|++++|+|+++ +.....|+..+.. .+.|+++|+||+|+.. .... +.....+...
T Consensus 82 ~~~~i~v~D~~~---~~~~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~--------------- 138 (165)
T 2wji_A 82 PDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILG--------------- 138 (165)
T ss_dssp CSEEEEEEETTC---HHHHHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHT---------------
T ss_pred CCEEEEEecCCc---hhHhHHHHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhC---------------
Confidence 999999999987 4445556666654 3789999999999753 1111 1222222111
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 139 --~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 --VKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp --SCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred --CCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998876
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-27 Score=163.89 Aligned_cols=150 Identities=19% Similarity=0.213 Sum_probs=111.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhh--------Hhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV--------WRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~--------~~~~~~ 87 (194)
+..+|+++|++|||||||++++.+..... ...|.+.....+.+++..+.+|||||+.+.... ...+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 45799999999999999999999876532 223444456778888989999999998753211 123578
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+++..++. ...|+..+... ...+.|+++|+||+|+..... ... ...
T Consensus 83 ~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----~~~-----------------~~~ 138 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVD-PAEIWPEFIAR-LPAKLPITVVRNKADITGETL-----GMS-----------------EVN 138 (172)
T ss_dssp TCSEEEEEEETTTCCCCS-HHHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----EEE-----------------EET
T ss_pred hCCEEEEEEECCCCCCHH-HHHHHHHHHHh-cccCCCEEEEEECccCCcchh-----hhh-----------------hcc
Confidence 999999999999988876 34566555443 235799999999999854210 000 112
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|++++|++|.+.+
T Consensus 139 ~~~~~~~SA~~g~gv~~l~~~l~~~~ 164 (172)
T 2gj8_A 139 GHALIRLSARTGEGVDVLRNHLKQSM 164 (172)
T ss_dssp TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHh
Confidence 36899999999999999999998865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.5e-28 Score=171.25 Aligned_cols=157 Identities=17% Similarity=0.250 Sum_probs=113.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC--CCC-ccccCCCcceeEEEe-------CCEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND--RTA-QHMPTLHPTSEELSM-------GDIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~--~~~-~~~~t~~~~~~~~~~-------~~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
+++|+++|++|||||||++++.+. .+. .+.+|.+.+...... ....+.+||++|++++...++.++++++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 333 467777776544332 3468999999999999888888899999
Q ss_pred EEEEEEECCCC-CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HH-HhhhcccCccCCCccCccccc
Q psy2159 91 AIVFIIDASDR-SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED----EV-RHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 91 ~ii~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----e~-~~~~~~~~~~~~~~~~~~~~~ 164 (194)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+..... +. ....+. .
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------------~ 145 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKELLNK--------------R 145 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTC--------------T
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHh--------------c
Confidence 99999999997 47888888888876542 578999999999986532111 11 111111 1
Q ss_pred CC-cceEEEEeccccCC-ChHHHHHHHhhhc
Q psy2159 165 QM-RPMELFMCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~-~~~~~~~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
+. ....++++||++|. +++++++.+.+.+
T Consensus 146 ~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 146 GFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp TSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred CCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 11 11259999999997 9999999998754
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-29 Score=182.39 Aligned_cols=173 Identities=17% Similarity=0.245 Sum_probs=120.0
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+.++|+++|++|||||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|++
T Consensus 26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 3467899999999999999999999987775 4455554433 2333343 5677999999999999999999999999
Q ss_pred EEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 93 VFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+.............+........ ..+++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~ 181 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI--GAVKY 181 (204)
Confidence 9999999999999887 455554332 247999999999998753211111110000000000011111111 12378
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998754
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=176.95 Aligned_cols=159 Identities=15% Similarity=0.237 Sum_probs=122.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEe-CCEEEEEEEcCCCccc-----hhhHhhhhhcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQA-----RRVWRDYFPAV 89 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~-----~~~~~~~~~~~ 89 (194)
...||+++|.+|||||||++++.+.... .+.+|.+.....+.+ ++..+.+||+||++++ ...+..+++++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4579999999999999999999987433 577888888888876 5689999999999988 67788889999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCCCCCH--------HHHHhhhcccCccCCCccCc
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFDAASE--------DEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~~~~~--------~e~~~~~~~~~~~~~~~~~~ 160 (194)
|++++|+|++++.++..+..|...+... ...++.|+++++||+|+.+.... +++.+..+.
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~----------- 150 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSE----------- 150 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHT-----------
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHH-----------
Confidence 9999999999999999887654333221 11367999999999998762112 233333322
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+...++++++||++ .++.++|..+++.+
T Consensus 151 ---~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 151 ---FGFPNLIGFPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp ---TTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred ---cCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence 222247899999999 89999999888754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=168.43 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=111.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCC------ccc---hhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGH------VQA---RRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~------~~~---~~~~~~~~ 86 (194)
.+.++|+++|++|||||||++++.+..+. ....|.......+..++..+.+|||||+ ++. ...+..++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 46789999999999999999999988764 1222445555666778899999999999 331 12233457
Q ss_pred hcCCEEEEEEECCCCCChHHH--HHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHH---HHHhhhcccCccCCCccC
Q psy2159 87 PAVDAIVFIIDASDRSRFPES--KYELDNLLADDALTDVPILILGNKIDIFDA--ASED---EVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~---e~~~~~~~~~~~~~~~~~ 159 (194)
..+|++++|+|++++.++... ..++..+... ..+.|+++|+||+|+.+. ...+ ++....+.
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------- 174 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDN---------- 174 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHH----------
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHh----------
Confidence 788999999999998887632 3455555332 357999999999999763 2222 12222211
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+.+++++|||++|.|++++|++|.+.+
T Consensus 175 -----~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 203 (228)
T 2qu8_A 175 -----VKNPIKFSSFSTLTGVGVEQAKITACELL 203 (228)
T ss_dssp -----CCSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----cCCCceEEEEecccCCCHHHHHHHHHHHH
Confidence 11237899999999999999999998764
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=165.65 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=106.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCccee--EEEeCCEEEEEEEcCC----------CccchhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTSE--ELSMGDIVFTTHDLGG----------HVQARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~~--~~~~~~~~~~~~d~~g----------~~~~~~~~~~~ 85 (194)
.+.++|+++|++|||||||++++.+..+ ..+.++.+.+.. ....+ ..+.+||+|| ++.+...+..+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999874 355555554432 23333 3799999999 66677777777
Q ss_pred hhcC---CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccc
Q psy2159 86 FPAV---DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 86 ~~~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
++.+ |++++|+|+++..++.... +...+.. .+.|+++|+||+|+.+....++..+.+....
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~----------- 163 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTL----------- 163 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH-----------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHH-----------
Confidence 7776 9999999999877666532 2222222 5789999999999977443333222222111
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|++|.+.+
T Consensus 164 -~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 164 -NIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp -TCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -cccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 112346899999999999999999998876
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.2e-27 Score=177.93 Aligned_cols=158 Identities=18% Similarity=0.284 Sum_probs=114.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh---hHhhhhhcCCEEEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR---VWRDYFPAVDAIVFI 95 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~---~~~~~~~~~d~ii~v 95 (194)
||+++|.+|||||||++++.+..++. +.||++.....+. ...++++|||+||+++.+ .+..++++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988765543 5678888776653 347999999999999964 468899999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccCcccc-cCCcc
Q psy2159 96 IDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREI-LQMRP 168 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~-~~~~~ 168 (194)
+|+++. +.....+|.+++.. ...++.|+++++||+|+..+... .++........ ++. .....
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~l---------a~~~~~~~~ 148 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEEL---------LELGLDGVQ 148 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTT---------SSSSCSCCC
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHH---------HhhcccccC
Confidence 999987 55555555444321 12368999999999999764221 12222221111 000 01135
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.|++|||++ .+|.++|..+++.+
T Consensus 149 i~f~eTSAkd-~nV~eAFs~iv~~l 172 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRIVQKL 172 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHHHTTS
T ss_pred ceEEEeccCC-CcHHHHHHHHHHHH
Confidence 7899999998 58999999998865
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=165.14 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=112.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEE-EeCCEEEEEEEcCC----------CccchhhHhhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL-SMGDIVFTTHDLGG----------HVQARRVWRDYFP 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~d~~g----------~~~~~~~~~~~~~ 87 (194)
...++|+++|++|||||||++++.+.....+.++.+.+.... ...+..+.+||+|| ++.+...+..+++
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 356799999999999999999999988776666666554322 22234688999999 5556666677776
Q ss_pred cC---CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 88 AV---DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 88 ~~---d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
.+ |++++|+|.++..+.... .+...+.. .+.|+++|+||+|+.+....++..+.+.... .
T Consensus 101 ~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~------------~ 163 (195)
T 3pqc_A 101 NRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRKVF------------S 163 (195)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------H
T ss_pred cCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHHHH------------h
Confidence 65 999999999875443332 22222222 3789999999999976444444433332211 1
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....++++++||++|.|++++|++|.+.+
T Consensus 164 ~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 192 (195)
T 3pqc_A 164 KYGEYTIIPTSSVTGEGISELLDLISTLL 192 (195)
T ss_dssp SSCCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred hcCCCceEEEecCCCCCHHHHHHHHHHHh
Confidence 12336799999999999999999999876
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.5e-26 Score=175.67 Aligned_cols=158 Identities=17% Similarity=0.242 Sum_probs=122.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....++|+++|.+|+|||||++++.+..+. .+.+|.+... ..+..++ ..+.+||+||++++...+..+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 456789999999999999999999988775 5566665543 3455666 45669999999999999999999999999
Q ss_pred EEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCcc
Q psy2159 94 FIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~ 158 (194)
+|+|++++.++.... .|+..+.... ++.|+++|+||+|+.+. ...++.....+..
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------- 301 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI-------- 301 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--------
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHc--------
Confidence 999999998898887 4555554432 48999999999998543 2233333333221
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++|||++|.|++++|++|.+.+
T Consensus 302 --------~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 302 --------GAVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp --------TCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------CCcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 124799999999999999999998764
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=162.11 Aligned_cols=157 Identities=20% Similarity=0.307 Sum_probs=123.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCc--ceeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHP--TSEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
...++++++|++|||||||++++.+..+. .+.+|.+. ..+.+.+++ ..+.+||++|++++...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45689999999999999999999998775 45566554 346677777 46789999999998888888888999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.+ ....++......... +.+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~-----------------~~~ 144 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSF 144 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcC-----------------CeE
Confidence 999999988888887777666432 235689999999999865 344555555543322 678
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||+++.|++++|++|.+.+
T Consensus 145 ~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 145 IETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=170.45 Aligned_cols=159 Identities=19% Similarity=0.220 Sum_probs=119.3
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeC-CEEEEEEEcCCCccch----------hh
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMG-DIVFTTHDLGGHVQAR----------RV 81 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~d~~g~~~~~----------~~ 81 (194)
...++..|+++|.+|||||||+|++.+.++..+.+ |..........+ +..+.+|||||+.+.. ..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 34577789999999999999999999988764333 334445566777 8999999999986543 45
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC-CCCCHHHHHhhhcccCccCCCccCc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF-DAASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~-~~~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
...++..+|++++|+|+++..++.....|+..+.. .+.|+++|+||+|+. +.....+....+...
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~---------- 151 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKK---------- 151 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHH----------
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHh----------
Confidence 56678899999999999998777776655555543 478999999999997 433333333333221
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++||++|.|++++|+++.+.+
T Consensus 152 ----~~~~~~i~~vSA~~g~gv~~L~~~l~~~l 180 (308)
T 3iev_A 152 ----HPELTEIVPISALKGANLDELVKTILKYL 180 (308)
T ss_dssp ----CTTCCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred ----ccCCCeEEEEeCCCCCCHHHHHHHHHHhC
Confidence 11336799999999999999999998865
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=160.71 Aligned_cols=151 Identities=23% Similarity=0.310 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-cccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP-- 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~-- 87 (194)
.+.++|+++|++|||||||++++.+..+. ...+ |.......+..++..+.+||+||+.++. ..+..++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 36679999999999999999999987543 2233 3444566778888999999999998764 34555554
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCC
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
.+|++++|+|.++ +.....|+..+.. .+.|+++++||+|+..... .++.....+...
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--------------- 142 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKILG--------------- 142 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHT---------------
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHHhC---------------
Confidence 4999999999875 6666677776654 5789999999999754110 012222222211
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 143 --~~~~~~Sa~~~~~v~~l~~~i~~~~ 167 (188)
T 2wjg_A 143 --VKVVPLSAAKKMGIEELKKAISIAV 167 (188)
T ss_dssp --SCEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --CCeEEEEecCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-26 Score=163.28 Aligned_cols=159 Identities=14% Similarity=0.143 Sum_probs=108.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCC-----------CccchhhHhhhhhc-
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGG-----------HVQARRVWRDYFPA- 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g-----------~~~~~~~~~~~~~~- 88 (194)
++|+++|++|||||||++++.+..+. .+.|+.......+..+ .+.+||+|| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999998765 3445544445555555 789999999 56666777777776
Q ss_pred CCEEEEEEECCCCCChHHHH-HHHHH--------HHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccC
Q psy2159 89 VDAIVFIIDASDRSRFPESK-YELDN--------LLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~-~~~~~--------~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
++++++|+++.+..++.... .|... +.......+.|+++|+||+|+.... .++.....+....
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~------- 151 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEV------- 151 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTC-------
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhh-------
Confidence 67666666666666777663 33221 1111112578999999999997643 3334333333220
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.......+++++||++|.|++++|++|.+.+
T Consensus 152 ---~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 182 (190)
T 2cxx_A 152 ---PLSEIDKVFIPISAKFGDNIERLKNRIFEVI 182 (190)
T ss_dssp ---CGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---hhhccCCcEEEEecCCCCCHHHHHHHHHHhc
Confidence 0000024689999999999999999998764
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=182.41 Aligned_cols=168 Identities=16% Similarity=0.179 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHh-----CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEE--------EeC----CE
Q psy2159 4 IWTKFREVLLRL-----GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEEL--------SMG----DI 65 (194)
Q Consensus 4 ~~~~~~~~~~~~-----~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~--------~~~----~~ 65 (194)
+..|++...... ....+.+||+++|.+|||||||++++.+..+. .+.+|.+.+.... ..+ +.
T Consensus 19 i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~ 98 (535)
T 3dpu_A 19 VRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKEC 98 (535)
T ss_dssp HHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTC
T ss_pred HHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceE
Confidence 455666665521 12457789999999999999999999998875 5677877776533 122 47
Q ss_pred EEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHH
Q psy2159 66 VFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEV 143 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~ 143 (194)
.+.+||+||++.+...+..+++.+|++++|+|+++ ++....|+..+.... ++.|+++|+||+|+.+ ....+++
T Consensus 99 ~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~---~~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~ 173 (535)
T 3dpu_A 99 LFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKI 173 (535)
T ss_dssp EEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGG---GGGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHH
T ss_pred EEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCC---chhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHH
Confidence 99999999999999988889999999999999976 456667777776543 4689999999999976 3456666
Q ss_pred HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 144 RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+.+.... .+++++||++|.|++++++++.+.+
T Consensus 174 ~~~~~~~~-----------------~~~~~vSA~~g~gi~eL~~~l~~~~ 206 (535)
T 3dpu_A 174 NERFPAIE-----------------NRFHRISCKNGDGVESIAKSLKSAV 206 (535)
T ss_dssp HHHCGGGT-----------------TCEEECCC-----CTTHHHHHHHHH
T ss_pred HHHHHhcC-----------------CceEEEecCcccCHHHHHHHHHHHH
Confidence 66665543 5799999999999999999998765
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-27 Score=173.98 Aligned_cols=160 Identities=16% Similarity=0.146 Sum_probs=112.9
Q ss_pred cCCCCeEEEEcCC---------CCChHHHHHHHHcC---CCC-ccccCC-Ccc--eeE----------------EEeCCE
Q psy2159 18 WKKSGKLLFLGLD---------NAGKTFLLQMLKND---RTA-QHMPTL-HPT--SEE----------------LSMGDI 65 (194)
Q Consensus 18 ~~~~~~i~v~G~~---------~~GKStli~~~~~~---~~~-~~~~t~-~~~--~~~----------------~~~~~~ 65 (194)
..+.+||+++|.+ |||||||++++.+. .+. .+.+|. +.. ... ++....
T Consensus 16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 95 (255)
T 3c5h_A 16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC 95 (255)
T ss_dssp CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence 4567899999999 99999999999984 343 333432 221 111 122337
Q ss_pred EEEEEE-----------------------cCCCccchhhHhhhhh---------------------cCCEEEEEEECCCC
Q psy2159 66 VFTTHD-----------------------LGGHVQARRVWRDYFP---------------------AVDAIVFIIDASDR 101 (194)
Q Consensus 66 ~~~~~d-----------------------~~g~~~~~~~~~~~~~---------------------~~d~ii~v~d~~~~ 101 (194)
.+.+|| ++|++++...+..++. ++|++++|+|++++
T Consensus 96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~ 175 (255)
T 3c5h_A 96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG 175 (255)
T ss_dssp CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence 899999 6666666666666666 79999999999998
Q ss_pred --CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC
Q psy2159 102 --SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179 (194)
Q Consensus 102 --~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (194)
.++..+..|+..+.......+.|+++|+||+|+......++....... ...++++++||++|
T Consensus 176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~----------------~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALS----------------KKNLQVVETSARSN 239 (255)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHT----------------SSSCCEEECBTTTT
T ss_pred chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHh----------------cCCCeEEEEECCCC
Confidence 899999998888765422357999999999998653222333333321 11367999999999
Q ss_pred CChHHHHHHHhhhc
Q psy2159 180 QGFGNGFRWLANYI 193 (194)
Q Consensus 180 ~~v~~l~~~l~~~i 193 (194)
.|++++|++|.+.+
T Consensus 240 ~gv~elf~~l~~~l 253 (255)
T 3c5h_A 240 VNVDLAFSTLVQLI 253 (255)
T ss_dssp BSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998865
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=163.74 Aligned_cols=147 Identities=19% Similarity=0.279 Sum_probs=109.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhh--h
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYF--P 87 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~ 87 (194)
.+.++|+++|++|||||||+|++.+..+. . ...|.......+..++..+.+||+||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 35679999999999999999999987654 2 23344444566777789999999999987653 234444 5
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--C--CCHHHHHhhhcccCccCCCccCcccc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--A--ASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~--~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
.+|++++|+|+++.+ ....++..+.. .+.|+++++||+|+.. . ...+++.+.+ +
T Consensus 83 ~~d~ii~V~D~t~~~---~~~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---g------------ 140 (258)
T 3a1s_A 83 DADLVILVADSVNPE---QSLYLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQKHL---G------------ 140 (258)
T ss_dssp CCSEEEEEEETTSCH---HHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHHHH---C------------
T ss_pred CCCEEEEEeCCCchh---hHHHHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHHHc---C------------
Confidence 799999999999854 34445566544 4799999999999754 1 2223333332 2
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++|+++.+.
T Consensus 141 -----~~vi~~SA~~g~gi~el~~~i~~~ 164 (258)
T 3a1s_A 141 -----IPVVFTSSVTGEGLEELKEKIVEY 164 (258)
T ss_dssp -----SCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -----CCEEEEEeeCCcCHHHHHHHHHHH
Confidence 679999999999999999999875
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=164.83 Aligned_cols=155 Identities=22% Similarity=0.206 Sum_probs=111.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCcc--------chhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQ--------ARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~--------~~~~~~~~~ 86 (194)
.+..+|+++|.+|||||||+|++.+.++..+. .|.......+..++..+.+|||||+.+ +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 35568999999999999999999998876332 233333345566789999999999876 344556678
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|+++..+. ...++...+... .++.|+++++||+|+..... ++.+.++.. .
T Consensus 85 ~~ad~il~VvD~~~~~~~--~~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~--~~~~~~~~~---------------~ 144 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTP--EDELVARALKPL-VGKVPILLVGNKLDAAKYPE--EAMKAYHEL---------------L 144 (301)
T ss_dssp SSCSEEEEEEETTSCCCH--HHHHHHHHHGGG-TTTSCEEEEEECGGGCSSHH--HHHHHHHHT---------------S
T ss_pred hcCCEEEEEEECCCCCCh--HHHHHHHHHHhh-cCCCCEEEEEECcccCCchH--HHHHHHHHh---------------c
Confidence 899999999999886433 345554444432 24789999999999865321 122222221 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|++++++++.+.+
T Consensus 145 ~~~~~~~iSA~~g~gv~~l~~~l~~~l 171 (301)
T 1wf3_A 145 PEAEPRMLSALDERQVAELKADLLALM 171 (301)
T ss_dssp TTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence 235799999999999999999998765
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=155.13 Aligned_cols=156 Identities=19% Similarity=0.267 Sum_probs=124.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCCE--EEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGDI--VFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..++++++|++|||||||++++.+..+. .+.+|.+.+ .+.+.+++. .+.+||++|++++...+..+++.++++++
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 107 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL 107 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence 4578999999999999999999998876 566666653 466777774 56679999999988888888899999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|.++..++..+..|+..+... ...+.|+++++||+|+.+ ....++........ .+.++
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~-----------------~~~~l 169 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN-----------------GLSFI 169 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHT-----------------TCEEE
T ss_pred EEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHc-----------------CCEEE
Confidence 99999988888877777665432 235689999999999865 34455555554332 26789
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++||+++.|++++|++|.+.+
T Consensus 170 d~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 170 ETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999998765
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=166.39 Aligned_cols=144 Identities=21% Similarity=0.271 Sum_probs=107.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh----------hHhhhh--
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF-- 86 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~-- 86 (194)
.+|+++|++|||||||+|++.+.... ....|.......+.+++..+.+|||||+..+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 37999999999999999999988643 233344455677888899999999999887653 455566
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCCCccCccc
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
..+|++++|+|+++.+ ....+...+.. .+.|+++|+||+|+.+. ...+.+.+.+ +
T Consensus 82 ~~~d~vi~VvDas~~~---~~~~l~~~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~l---g----------- 140 (256)
T 3iby_A 82 LEYDCIINVIDACHLE---RHLYLTSQLFE----LGKPVVVALNMMDIAEHRGISIDTEKLESLL---G----------- 140 (256)
T ss_dssp SCCSEEEEEEEGGGHH---HHHHHHHHHTT----SCSCEEEEEECHHHHHHTTCEECHHHHHHHH---C-----------
T ss_pred CCCCEEEEEeeCCCch---hHHHHHHHHHH----cCCCEEEEEEChhcCCcCCcHHHHHHHHHHc---C-----------
Confidence 7899999999998843 33333333332 47899999999997542 2223333333 2
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++++++||++|.|++++|+++.+.
T Consensus 141 ------~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 141 ------CSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp ------SCEEECBGGGTBSHHHHHHHHHTC
T ss_pred ------CCEEEEECCCCCCHHHHHHHHHhh
Confidence 679999999999999999999764
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-25 Score=161.16 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=107.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC-CCccccCCCc----ceeEEE-eCCEEEEEEEcCCCc----------cchhhH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHP----TSEELS-MGDIVFTTHDLGGHV----------QARRVW 82 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~-~~~~~~t~~~----~~~~~~-~~~~~~~~~d~~g~~----------~~~~~~ 82 (194)
.+..+|+++|.+|+|||||++++.+.. .....++.+. ....+. .++..+.+|||||.. .+....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 357899999999999999999999986 3333333322 233333 345789999999953 334555
Q ss_pred hhhhhc---CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhhhcccCccCC
Q psy2159 83 RDYFPA---VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE----VRHFFGLYGLTTG 155 (194)
Q Consensus 83 ~~~~~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e----~~~~~~~~~~~~~ 155 (194)
..++.. +|++++|+|.++..+ .....+...+.. .+.|+++|+||+|+.+.....+ +.+.+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~--~~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~---- 177 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLT--ELDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYR---- 177 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC--HHHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCC--HHHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhh----
Confidence 556655 778999999988533 333333344333 5789999999999976322222 222222110
Q ss_pred CccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 156 KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
........+++++||++|.|++++|++|.+.+
T Consensus 178 ------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~ 209 (223)
T 4dhe_A 178 ------DAGYAGKLTVQLFSALKRTGLDDAHALIESWL 209 (223)
T ss_dssp ------HHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ------hcccCCCCeEEEeecCCCcCHHHHHHHHHHhc
Confidence 00012447899999999999999999998865
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.4e-25 Score=166.85 Aligned_cols=147 Identities=22% Similarity=0.247 Sum_probs=107.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccchh----------hHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARR----------VWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~ 86 (194)
+.++|+++|++|||||||+|++++..+. ....|.......+..++..+.+|||||+.++.. ....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4679999999999999999999988743 223344445567777888999999999887552 223333
Q ss_pred --hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC----CCHHHHHhhhcccCccCCCccCc
Q psy2159 87 --PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA----ASEDEVRHFFGLYGLTTGKEFTP 160 (194)
Q Consensus 87 --~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~----~~~~e~~~~~~~~~~~~~~~~~~ 160 (194)
+.+|++++|+|+++.+ ....+...+.. .+.|+++|+||+|+.+. ...+++.+.+ +
T Consensus 82 ~~~~~d~ii~VvD~~~~~---~~~~~~~~l~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l---g--------- 142 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLE---RNLYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIEIDALSARL---G--------- 142 (274)
T ss_dssp HHTCCSEEEEEEEGGGHH---HHHHHHHHHHH----HTCCEEEEEECHHHHHHTTEEECHHHHHHHH---T---------
T ss_pred hhcCCCEEEEEecCCChH---HHHHHHHHHHh----cCCCEEEEEECccchhhhhHHHHHHHHHHhc---C---------
Confidence 6899999999998843 33344444433 37899999999998542 1223333332 1
Q ss_pred ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 161 REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 161 ~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|+++++++|.+.+
T Consensus 143 --------~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 143 --------CPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp --------SCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred --------CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998765
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=164.23 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=118.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch---------hhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR---------RVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~---------~~~~~~~ 86 (194)
....+++++|++|||||||++++.+..+. ....|.+.....+..++..+.+|||||..... .....+.
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 56789999999999999999999988753 24456666677777788999999999985421 2223445
Q ss_pred hcCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 87 PAVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
..+|++++|+|+++.. ++.....++..+.... .+.|+++|+||+|+......++..+.+...
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~~~~~~~~~~~-------------- 308 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENIKRLEKFVKEK-------------- 308 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHHHHHHHHHHHT--------------
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHHHHHHHHHHhc--------------
Confidence 6799999999998876 5677777777776542 278999999999987633333344433221
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|+|+++++++|.+.+
T Consensus 309 ---~~~~~~iSA~~g~gi~~l~~~i~~~l 334 (357)
T 2e87_A 309 ---GLNPIKISALKGTGIDLVKEEIIKTL 334 (357)
T ss_dssp ---TCCCEECBTTTTBTHHHHHHHHHHHH
T ss_pred ---CCCeEEEeCCCCcCHHHHHHHHHHHH
Confidence 26789999999999999999998764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=162.95 Aligned_cols=145 Identities=25% Similarity=0.391 Sum_probs=105.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC-Ccccc--CCCcceeEEEeCCEEEEEEEcCCCccch------hhHhhhhh--cC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMP--TLHPTSEELSMGDIVFTTHDLGGHVQAR------RVWRDYFP--AV 89 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~--t~~~~~~~~~~~~~~~~~~d~~g~~~~~------~~~~~~~~--~~ 89 (194)
..+|+++|++|||||||+|++.+... ....| |.......+.. +..+.+||+||+.++. .....++. .+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 46899999999999999999998753 22222 33333334444 6789999999998765 44555665 59
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
|++++|+|+++. .....|...+.. .+.|+++++||+|+.. ....+++.+.+ .
T Consensus 82 d~vi~V~D~t~~---e~~~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g-------------- 137 (272)
T 3b1v_A 82 DSILNVVDATNL---ERNLYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSYHL---G-------------- 137 (272)
T ss_dssp SEEEEEEEGGGH---HHHHHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--------------
T ss_pred CEEEEEecCCch---HhHHHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHHHc---C--------------
Confidence 999999999884 344455555544 4789999999999753 12223333322 2
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 138 ---~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 138 ---VPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp ---SCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred ---CCEEEEEccCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=160.48 Aligned_cols=148 Identities=20% Similarity=0.214 Sum_probs=111.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-c--cccCCCcceeEEEeCCEEEEEEEcCCCccchh------hHhhhh--hc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-Q--HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR------VWRDYF--PA 88 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~------~~~~~~--~~ 88 (194)
+..+|+++|++|||||||+|++.+..+. . ...|.......+..++..+.+||+||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4579999999999999999999988663 1 22344444567778889999999999887655 455555 67
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCccccc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREIL 164 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 164 (194)
+|++++|+|+++. .....++..+... ...|+++++||+|+.+ ....+++.+.++
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg---------------- 139 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKELG---------------- 139 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----------------
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHHcC----------------
Confidence 9999999999883 4455566666553 2389999999999743 223344444332
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++++||++|.|++++|+++.+.+
T Consensus 140 ----~~~~~~Sa~~g~gi~~l~~~i~~~~ 164 (271)
T 3k53_A 140 ----VPVIPTNAKKGEGVEELKRMIALMA 164 (271)
T ss_dssp ----SCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred ----CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999998753
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.91 E-value=7.5e-24 Score=169.17 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=113.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCC----------ccchhhHh-h
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGH----------VQARRVWR-D 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~-~ 84 (194)
...+|+++|.+|+|||||+|++.+..... ...|.+.....+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 55899999999999999999999887642 333445555678889999999999998 33443333 4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
+++.+|++++|+|+++..++... .++..+.. .++|+++|+||+|+.+... .+++.+.+....
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l----------- 317 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF----------- 317 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHC-----------
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhc-----------
Confidence 67889999999999998877664 34444433 5799999999999976432 344544433221
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+.+.+.+
T Consensus 318 -~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~ 347 (436)
T 2hjg_A 318 -QFLDYAPILFMSALTKKRIHTLMPAIIKAS 347 (436)
T ss_dssp -GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred -ccCCCCCEEEEecccCCCHHHHHHHHHHHH
Confidence 112236799999999999999999987653
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=170.71 Aligned_cols=149 Identities=23% Similarity=0.302 Sum_probs=116.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCc-cch--------hhHhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHV-QAR--------RVWRDYF 86 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~-~~~--------~~~~~~~ 86 (194)
..++|+++|.+|+|||||+|++.+.+.. ....|.++....+.+++..+.+|||||+. +.. .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 3479999999999999999999987643 34456677778899999999999999987 543 2234568
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
+.+|++++|+|++++.++... ..+ +.+ .++|+++|+||+|+.+....+++.+...
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~------------------ 376 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG------------------ 376 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT------------------
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc------------------
Confidence 899999999999998777553 233 332 3689999999999977555556555432
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 377 ~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 377 TDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp CSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 114689999999999999999998753
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-24 Score=170.83 Aligned_cols=154 Identities=20% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhH--------hhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 86 (194)
...++|+++|++|+|||||+|++.+.... ....|.+.....+.+++..+.+|||||+.++...+ ..++
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 45678999999999999999999987643 23335555667888999999999999997755332 3467
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|++++.++.....+. .++... .++|+++|+||+|+.+....+. +.+...
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~-~~l~~l--~~~piIvV~NK~Dl~~~~~~~~--~~l~~~---------------- 369 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIR-ELKAAH--PAAKFLTVANKLDRAANADALI--RAIADG---------------- 369 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHH-HHHHHC--TTSEEEEEEECTTSCTTTHHHH--HHHHHH----------------
T ss_pred ccCCEEEEEEECCCCcchhhhHHHH-HHHHhc--CCCCEEEEEECcCCCCccchhH--HHHHhc----------------
Confidence 8899999999999988886433222 222221 3789999999999977543321 112110
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 370 ~~~~~i~vSAktg~GI~eL~~~i~~~~ 396 (476)
T 3gee_A 370 TGTEVIGISALNGDGIDTLKQHMGDLV 396 (476)
T ss_dssp HTSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred CCCceEEEEECCCCCHHHHHHHHHHHH
Confidence 015689999999999999999998764
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-24 Score=170.79 Aligned_cols=158 Identities=12% Similarity=0.142 Sum_probs=115.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCC----------CccchhhHh-
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGG----------HVQARRVWR- 83 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g----------~~~~~~~~~- 83 (194)
....+++++|.+|+|||||++++.+.... ....|.+.....+..++..+.+||||| ++++.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 35689999999999999999999977643 233345555677888999999999999 566665544
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
.+++.+|++++|+|+++.. .....++...+.. .++|+++|+||+|+.+ ....+++.+.++...
T Consensus 273 ~~~~~ad~~llviD~~~~~--~~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 337 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGI--IEQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHF---------- 337 (456)
T ss_dssp HHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCc--CHHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhc----------
Confidence 3678999999999998843 3444444444443 5799999999999975 334455555554432
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+++.+.+
T Consensus 338 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 338 --QFLDYAPILFMSALTKKRIHTLMPAIIKAS 367 (456)
T ss_dssp --GGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred --ccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence 122346799999999999999999998754
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=165.47 Aligned_cols=160 Identities=15% Similarity=0.137 Sum_probs=115.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc----ccCCCc-------------------ceeEEEeCCEEEEEEEcC
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH----MPTLHP-------------------TSEELSMGDIVFTTHDLG 73 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~----~~t~~~-------------------~~~~~~~~~~~~~~~d~~ 73 (194)
...++++|+++|++++|||||+++|.+...... ..+.+. ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 346789999999999999999999998543211 111000 000001122789999999
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH----HHHhhhcc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED----EVRHFFGL 149 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~----e~~~~~~~ 149 (194)
|++++...+...+..+|++++|+|+++..++.+...++..+... ...|+++++||+|+.+....+ ++.+.+..
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999899999999999999999987788888777665443 236899999999997632222 22222221
Q ss_pred cCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|+++++++|.+.+
T Consensus 161 --------------~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l 190 (403)
T 3sjy_A 161 --------------TWAENVPIIPVSALHKINIDSLIEGIEEYI 190 (403)
T ss_dssp --------------STTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred --------------hCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence 223357899999999999999999998755
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-23 Score=150.47 Aligned_cols=173 Identities=21% Similarity=0.281 Sum_probs=120.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc----CCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA----VDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~d~ii 93 (194)
..+..+|+++|++|+|||||++++.+..+....++..++.. ..+....+.+||+||++++...+..+++. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 45778999999999999999999999876543222222221 11245789999999999998888888877 89999
Q ss_pred EEEECC-CCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc----c-----------CccC
Q psy2159 94 FIIDAS-DRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASEDEVRHFFGL----Y-----------GLTT 154 (194)
Q Consensus 94 ~v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~----~-----------~~~~ 154 (194)
+|+|++ ++.++.....|+..++... ...+.|+++|+||+|+......+++.+.+.. . .+..
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~ 167 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKI 167 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999 8889999999988887642 2367999999999999876554432221110 0 0000
Q ss_pred -----------C--CccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 155 -----------G--KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 155 -----------~--~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
. ....+........+.++.+|+..+ +++++++|+.+.
T Consensus 168 ~~~~~~~~~~~~l~~~~~f~~~~~~~~v~~~~~s~~~~-~i~~~~~~~~~~ 217 (218)
T 1nrj_B 168 NEEDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWREWIDEK 217 (218)
T ss_dssp ---------CTTC----CCCGGGSSSCEEEEECBTTTT-BCHHHHHHHHHH
T ss_pred ccccchhhhcccccCCCCccccccCCceEEEeccccCC-cHHHHHHHHHhh
Confidence 0 001111112233567888888776 699999999764
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-24 Score=165.26 Aligned_cols=136 Identities=21% Similarity=0.333 Sum_probs=106.3
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|+|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.+...|+..+.......
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 5555566777888999999999999999999999999999999999998 567889999999998876667
Q ss_pred CCcEEEEeeCCCCCC-----------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 122 DVPILILGNKIDIFD-----------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 122 ~~piiiv~nK~D~~~-----------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
+.|+++++||+|+.. ..+.++..+++......- ........+.+++|||+++.||++
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l------~~~~~~~~~~~~etSA~~~~nV~~ 333 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDL------NKRKDTKEIYTHFTCATDTKNVQF 333 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTT------CSCTTTCCEEEEECCTTCHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHh------hcccCCCceEEEEEECcCchhHHH
Confidence 899999999999852 244566665554211000 000013457899999999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+++.+.+
T Consensus 334 vF~~v~~~i 342 (353)
T 1cip_A 334 VFDAVTDVI 342 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=163.68 Aligned_cols=155 Identities=23% Similarity=0.349 Sum_probs=117.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCcc----chhhHhhh---hhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQ----ARRVWRDY---FPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~----~~~~~~~~---~~~~d 90 (194)
.+|+++|.++||||||++++...+.. ...+|..++...+.+++ ..+.+||+||+.+ ...+...+ +..+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 36889999999999999999987642 35678888888888886 8999999999643 33343444 44599
Q ss_pred EEEEEEECCC---CCChHHHHHHHHHHHhCCC-CCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 91 AIVFIIDASD---RSRFPESKYELDNLLADDA-LTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 91 ~ii~v~d~~~---~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
++++|+|+++ ..++.....|+.++..... ..++|+++|+||+|+... .+++....+... .
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e~~~~l~~~l~--------------~ 302 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEKLT--------------D 302 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHHCC--------------S
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HHHHHHHHHHhh--------------c
Confidence 9999999988 6778888888877766532 357999999999998652 122222222111 0
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++++|+++++++|.+.+
T Consensus 303 -~~~v~~iSA~tg~gi~eL~~~l~~~l 328 (342)
T 1lnz_A 303 -DYPVFPISAVTREGLRELLFEVANQL 328 (342)
T ss_dssp -CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred -CCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 15689999999999999999998875
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-24 Score=167.70 Aligned_cols=150 Identities=18% Similarity=0.289 Sum_probs=110.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCE-EEEEEEcCCCccchhh-------Hhhhhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDI-VFTTHDLGGHVQARRV-------WRDYFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~-~~~~~d~~g~~~~~~~-------~~~~~~ 87 (194)
...+|+++|+.|+|||||++++.+..+. ....|..+....+.+.+. .+.+|||||+.++... ...++.
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 5679999999999999999999988764 234456666777887774 9999999999876543 455788
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+. .......|+..+.. .+.|+++|+||+|+......+......+...
T Consensus 113 ~aD~vllVvD~~---~~~~~~~~l~~l~~----~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g---------------- 169 (423)
T 3qq5_A 113 RADCGILVTDSA---PTPYEDDVVNLFKE----MEIPFVVVVNKIDVLGEKAEELKGLYESRYE---------------- 169 (423)
T ss_dssp SCSEEEEECSSS---CCHHHHHHHHHHHH----TTCCEEEECCCCTTTTCCCTHHHHHSSCCTT----------------
T ss_pred cCCEEEEEEeCC---ChHHHHHHHHHHHh----cCCCEEEEEeCcCCCCccHHHHHHHHHHHcC----------------
Confidence 899999999982 23445566666554 3789999999999987554434333333322
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++++||++|.|++++|++|.+.+
T Consensus 170 -~~v~~vSAktg~gI~eL~~~L~~~l 194 (423)
T 3qq5_A 170 -AKVLLVSALQKKGFDDIGKTISEIL 194 (423)
T ss_dssp -CCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 5799999999999999999999876
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=165.86 Aligned_cols=149 Identities=19% Similarity=0.259 Sum_probs=103.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCcc---------chhhHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~ 88 (194)
.+|+++|.||||||||+|++.+.+... ...|.+.....+..++..+.+|||||+.. +...+..+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 378999999999999999999887542 33344555778888999999999999764 23456667899
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHH-HhhhcccCccCCCccCcccccCCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEV-RHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
+|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. ..+. .+.. . .+.
T Consensus 82 ad~il~V~D~~~~~~~~--d~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~--------------lg~- 139 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKE--DESLADFLRK---STVDTILVANKAENLREF-EREVKPELY-S--------------LGF- 139 (439)
T ss_dssp CSEEEEEEETTTCCCHH--HHHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG-G--------------GSS-
T ss_pred CCEEEEEEECCCCCCHH--HHHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH-h--------------cCC-
Confidence 99999999998754433 3344444433 468999999999974310 1122 2221 1 111
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++||++|.|++++++++.+.+
T Consensus 140 -~~~~~iSA~~g~gv~~L~~~i~~~l 164 (439)
T 1mky_A 140 -GEPIPVSAEHNINLDTMLETIIKKL 164 (439)
T ss_dssp -CSCEECBTTTTBSHHHHHHHHHHHH
T ss_pred -CCEEEEeccCCCCHHHHHHHHHHhc
Confidence 2479999999999999999998754
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=157.71 Aligned_cols=158 Identities=17% Similarity=0.161 Sum_probs=106.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----cccc--CCCcceeEEEe---------------C--------CEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMP--TLHPTSEELSM---------------G--------DIVFTT 69 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~~ 69 (194)
++.++|+++|+.++|||||+++|.+.... ...+ |++........ + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 46789999999999999999999965332 1222 55544332222 1 168999
Q ss_pred EEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----CHHHHHh
Q psy2159 70 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA----SEDEVRH 145 (194)
Q Consensus 70 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----~~~e~~~ 145 (194)
||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.. ..+++.+
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL---GIDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc---CCCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 999999998887777788899999999999764344444444433222 235899999999997632 2345555
Q ss_pred hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 146 FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+... .....+++++||++|.|+++++++|.+.+
T Consensus 163 ~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~i 196 (408)
T 1s0u_A 163 FVKGT--------------IAENAPIIPISAHHEANIDVLLKAIQDFI 196 (408)
T ss_dssp HHTTS--------------TTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred HHhhc--------------CCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 55431 12347899999999999999999998755
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=168.04 Aligned_cols=148 Identities=20% Similarity=0.242 Sum_probs=100.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCCCc--------cchhhHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGGHV--------QARRVWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g~~--------~~~~~~~~~~~~~ 89 (194)
.+|+++|.+|||||||+|++.+.....+.++.+.+ ...+..++..+.+|||||+. ++...+..+++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 58999999999999999999998776555555443 44555677899999999986 4556677788999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++|+|+.+..+.. ..++..++.. .++|+++|+||+|+.+.. .+..+.. . .+ .-
T Consensus 84 d~il~vvD~~~~~~~~--d~~~~~~l~~---~~~pvilv~NK~D~~~~~--~~~~~~~-~--------------lg--~~ 139 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAA--DEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFY-S--------------LG--FG 139 (436)
T ss_dssp SEEEEEEETTTCSCHH--HHHHHHHHTT---CCSCEEEEEECCCC-------CCCSSG-G--------------GS--SC
T ss_pred CEEEEEEeCCCCCCHH--HHHHHHHHHH---cCCCEEEEEECccCccch--hhHHHHH-H--------------cC--CC
Confidence 9999999998865544 3456665544 578999999999986521 1111111 0 11 12
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++||++|.|++++++++.+.+
T Consensus 140 ~~~~iSA~~g~gv~~L~~~i~~~l 163 (436)
T 2hjg_A 140 EPYPISGTHGLGLGDLLDAVAEHF 163 (436)
T ss_dssp CCEECBTTTTBTHHHHHHHHHHTG
T ss_pred CeEEEeCcCCCChHHHHHHHHHhc
Confidence 589999999999999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=153.08 Aligned_cols=155 Identities=15% Similarity=0.201 Sum_probs=108.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCc-cc--------hhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHV-QA--------RRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~-~~--------~~~~~~~ 85 (194)
.+..+++++|++|||||||+|++.+.++..+. .|.....+.+..++..+.+|||||+. .. ......+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~ 85 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS 85 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence 34568899999999999999999998764322 23333345667788999999999987 32 2223456
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
++.+|++++|+|.++ +.....++...+.. .+.|+++++||+|+... .+.+.+.+.... ..
T Consensus 86 l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~------------~~ 145 (301)
T 1ega_A 86 IGDVELVIFVVEGTR---WTPDDEMVLNKLRE---GKAPVILAVNKVDNVQE--KADLLPHLQFLA------------SQ 145 (301)
T ss_dssp CCCEEEEEEEEETTC---CCHHHHHHHHHHHS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHH------------TT
T ss_pred HhcCCEEEEEEeCCC---CCHHHHHHHHHHHh---cCCCEEEEEECcccCcc--HHHHHHHHHHHH------------Hh
Confidence 778999999999976 44444455555443 57899999999998651 233333332211 00
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....++++||++|.|++++++++.+.+
T Consensus 146 ~~~~~~i~iSA~~g~~v~~l~~~i~~~l 173 (301)
T 1ega_A 146 MNFLDIVPISAETGLNVDTIAAIVRKHL 173 (301)
T ss_dssp SCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred cCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence 1113689999999999999999998764
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.9e-24 Score=172.22 Aligned_cols=158 Identities=19% Similarity=0.148 Sum_probs=114.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+++.+|+++|++++|||||+++|.+..+. ....|.......+.. ++..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 46789999999999999999999976654 223344555555555 45789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA---SEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
|+|+++... ......+..+.. .+.|+++++||+|+.... ..+++...- ... . ......++
T Consensus 82 VVDa~dg~~-~qt~e~l~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~l~~~~-~~~----------e-~~~~~~~i 144 (537)
T 3izy_P 82 VVAADDGVM-KQTVESIQHAKD----AHVPIVLAINKCDKAEADPEKVKKELLAYD-VVC----------E-DYGGDVQA 144 (537)
T ss_dssp ECBSSSCCC-HHHHHHHHHHHT----TTCCEEECCBSGGGTTTSCCSSSSHHHHTT-SCC----------C-CSSSSEEE
T ss_pred EEECCCCcc-HHHHHHHHHHHH----cCCcEEEEEecccccccchHHHHHHHHhhh-hhH----------H-hcCCCceE
Confidence 999998653 334444444433 478999999999987521 112222211 100 0 11124689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++||++|.|++++++++...+
T Consensus 145 v~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 145 VHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp CCCCSSSSCSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhHHHHHHHhh
Confidence 9999999999999999998753
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.9e-23 Score=164.50 Aligned_cols=160 Identities=15% Similarity=0.113 Sum_probs=113.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC----CC------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR----TA------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA 88 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~----~~------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~ 88 (194)
.++++|+++|+.++|||||+++|.+.. .. ....|.+.....+.+++..+.+||+||++++...+...+..
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~ 96 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADI 96 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhh
Confidence 467899999999999999999999876 21 12346666667788889999999999999998888888999
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCccccc-CCc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREIL-QMR 167 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~ 167 (194)
+|++++|+|+++.. ..+..+.+..+.. .+.|.++++||+|+.+....+++.+.+.... ... ...
T Consensus 97 aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l----------~~~~~~~ 161 (482)
T 1wb1_A 97 IDLALIVVDAKEGP-KTQTGEHMLILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL----------QSTHNLK 161 (482)
T ss_dssp CCEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH----------HHSSSGG
T ss_pred CCEEEEEEecCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHH----------hhhcccc
Confidence 99999999998743 3334444443322 4688899999999976322222322222111 001 122
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|+++++++|.+.+
T Consensus 162 ~~~ii~vSA~~g~gI~~L~~~L~~~i 187 (482)
T 1wb1_A 162 NSSIIPISAKTGFGVDELKNLIITTL 187 (482)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHHhh
Confidence 46899999999999999999998754
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=166.35 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchhhH--------hhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW--------RDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~--------~~~~ 86 (194)
...++|+++|++|+|||||+|++.+..... ...|.+.....+..++..+.+|||||+.+....+ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 356789999999999999999999865432 2233444456788899999999999986654322 3357
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|.+++.+... ..++..+ ...|+++|+||+|+....... ..+. . .
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~~--------------~-~ 355 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLEY--------------P-E 355 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCCC--------------C-T
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHHH--------------h-c
Confidence 88999999999998765544 3344443 236999999999987632211 1111 0 1
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+++++||++|.|+++++++|.+.+
T Consensus 356 ~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 356 NITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 235799999999999999999998764
|
| >3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=154.64 Aligned_cols=136 Identities=18% Similarity=0.302 Sum_probs=104.3
Q ss_pred cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCC
Q psy2159 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDAL 120 (194)
Q Consensus 51 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (194)
||+|.....+..++..+++||++|++++++.|..++++++++++|+|++ +.+++.+...++..+......
T Consensus 153 ~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~ 232 (327)
T 3ohm_A 153 PTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 232 (327)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGG
T ss_pred ceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhcc
Confidence 3566666778888999999999999999999999999999999999665 566788888899999887777
Q ss_pred CCCcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 121 TDVPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 121 ~~~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
.+.|+++++||+|+.. ..+.++..+++....... .....+.+.++++||+++.||
T Consensus 233 ~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~-------~~~~~~~i~~~~TsA~d~~nV 305 (327)
T 3ohm_A 233 QNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDL-------NPDSDKIIYSHFTCATDTENI 305 (327)
T ss_dssp TTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSS-------CTTTTSCEEEEECCTTCHHHH
T ss_pred CCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhh-------cccccCCcEEEEEEeecCHHH
Confidence 8899999999999754 134444444432111000 001234578899999999999
Q ss_pred HHHHHHHhhhc
Q psy2159 183 GNGFRWLANYI 193 (194)
Q Consensus 183 ~~l~~~l~~~i 193 (194)
+++|+.+.+.+
T Consensus 306 ~~vF~~v~~~I 316 (327)
T 3ohm_A 306 RFVFAAVKDTI 316 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=159.11 Aligned_cols=157 Identities=19% Similarity=0.190 Sum_probs=108.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh------------Hh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV------------WR 83 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~------------~~ 83 (194)
..++++++|++|||||||+|++.+.... ....|.++..+.+.+++..+.+|||+|..+.... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 4579999999999999999999988653 2333455566788899999999999998543221 12
Q ss_pred hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC--CHHHHHhhhcccCccCCCccCcc
Q psy2159 84 DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 84 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
.+++.+|++++|+|+++..+... .++...+.. .++|+++++||+|+.+.. ..+++.+.+....
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~--~~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~---------- 323 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQD--QRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL---------- 323 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC----------
T ss_pred HHHhhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHh----------
Confidence 35678999999999988665544 334444333 578999999999987632 2344443332211
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|++++|+.+.+.+
T Consensus 324 --~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 324 --YFIDYSPLIFTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp --GGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --ccCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 112235799999999999999999987643
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.1e-23 Score=158.59 Aligned_cols=135 Identities=21% Similarity=0.391 Sum_probs=95.5
Q ss_pred CCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCCC
Q psy2159 53 LHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALTD 122 (194)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~ 122 (194)
.|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .+++.+...++..+.......+
T Consensus 189 ~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~ 268 (362)
T 1zcb_A 189 KGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN 268 (362)
T ss_dssp SSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred cceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence 334444567788999999999999999999999999999999999998 6789999999999987766678
Q ss_pred CcEEEEeeCCCCCC------------------CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 123 VPILILGNKIDIFD------------------AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 123 ~piiiv~nK~D~~~------------------~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.|+|+++||+|+.. ..+.++..+++...... .........+.+++|||+++.||++
T Consensus 269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~------l~~~~~~~~~~~~~tSA~d~~nV~~ 342 (362)
T 1zcb_A 269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRG------KRRDQQQRPLYHHFTTAINTENIRL 342 (362)
T ss_dssp SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHT------TCSSCC--CCEEEECCTTCHHHHHH
T ss_pred CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHH------hhcccCCCceEEEEEecCCchhHHH
Confidence 99999999999852 14455555543110000 0000003457899999999999999
Q ss_pred HHHHHhhhc
Q psy2159 185 GFRWLANYI 193 (194)
Q Consensus 185 l~~~l~~~i 193 (194)
+|+++.+.+
T Consensus 343 vF~~v~~~i 351 (362)
T 1zcb_A 343 VFRDVKDTI 351 (362)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998754
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-22 Score=156.77 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=112.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----cccc--CCCcceeEEEe------------------C-----CEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMP--TLHPTSEELSM------------------G-----DIVFT 68 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~--t~~~~~~~~~~------------------~-----~~~~~ 68 (194)
..+.++|+++|+.++|||||+++|.+.... ...+ |++.......+ + ...+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 356789999999999999999999964322 2222 55544433322 1 16899
Q ss_pred EEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC----CHHHHH
Q psy2159 69 THDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA----SEDEVR 144 (194)
Q Consensus 69 ~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~----~~~e~~ 144 (194)
+||+||++++...+...+..+|++++|+|+++.....+....+..+... ...|+++++||+|+.+.. ..+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc---CCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 9999999998887777788899999999999754344444444333222 235899999999997632 123344
Q ss_pred hhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 145 HFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+... .....+++++||++|.|+++++++|.+.+
T Consensus 164 ~~l~~~--------------~~~~~~~i~vSA~~g~gi~~L~~~l~~~~ 198 (410)
T 1kk1_A 164 EFIEGT--------------VAENAPIIPISALHGANIDVLVKAIEDFI 198 (410)
T ss_dssp HHHTTS--------------TTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred HHHHhc--------------CcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence 443321 12347899999999999999999998755
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-23 Score=163.72 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=103.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcc----eeEEEeCCEEEEEEEcCC--------CccchhhHhhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPT----SEELSMGDIVFTTHDLGG--------HVQARRVWRDYF 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~d~~g--------~~~~~~~~~~~~ 86 (194)
....+|+++|.+|||||||+|++.+..+..+.++.+.+ ...+...+..+.+||||| ++++......++
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 34568999999999999999999998766444444444 344555678999999999 666777788889
Q ss_pred hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCC
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQM 166 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 166 (194)
..+|++++|+|..+ ++.....++..++.. .++|+++|+||+|+.+.. .+..+... .+
T Consensus 101 ~~ad~il~VvD~~~--~~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~---------------lg- 157 (456)
T 4dcu_A 101 DEADVIIFMVNGRE--GVTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS---------------LG- 157 (456)
T ss_dssp HHCSEEEEEEESSS--CSCHHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG---------------GS-
T ss_pred hhCCEEEEEEeCCC--CCChHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH---------------cC-
Confidence 99999999999876 455556667777655 689999999999985421 11111111 11
Q ss_pred cceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 167 RPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 167 ~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++||++|.|+.++++++.+.+
T Consensus 158 -~~~~~~iSA~~g~gv~~L~~~i~~~l 183 (456)
T 4dcu_A 158 -FGEPYPISGTHGLGLGDLLDAVAEHF 183 (456)
T ss_dssp -SSSEEECCTTTCTTHHHHHHHHHTTG
T ss_pred -CCceEEeecccccchHHHHHHHHhhc
Confidence 12357999999999999999998764
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=158.31 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC------------------CCCc-------cccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND------------------RTAQ-------HMPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~------------------~~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+..+|+++|++|+|||||+++|+.. .+.. ...|.......+.+++..+.+|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 4468999999999999999999621 1111 23356666778888999999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+.++...+..+++.+|++++|+|+++....... ..|..+.. .++|+++++||+|+...
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~~~~~~----~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLMEVCRL----RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHHHHHHT----TTCCEEEEEECTTSCCS
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEeCCCCccc
Confidence 999999999999999999999999987655443 34444433 47899999999999764
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=156.50 Aligned_cols=145 Identities=10% Similarity=-0.025 Sum_probs=112.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
+|+++|++++|||||+++|. ....|++.....++.++..+.+|||||++++.......++.+|++++|+| +. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 89999999999999999998 45667777777777788899999999999998877778899999999999 43 4
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcE-EEEee-CCCCCCCCCH----HHHHhhhcccCccCCCccCcccccCCcceEEEE--e
Q psy2159 103 RFPESKYELDNLLADDALTDVPI-LILGN-KIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFM--C 174 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~pi-iiv~n-K~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 174 (194)
.+.+...++..+.. .+.|. ++++| |+|+ +.... +++.+.++.. ....+++++ +
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~--------------~~~~~~ii~~~~ 156 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT--------------VLQDWECISLNT 156 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS--------------TTTTCEEEECCC
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc--------------CCCceEEEeccc
Confidence 56666666655543 35677 89999 9999 42111 2333333321 223478999 9
Q ss_pred cccc---CCChHHHHHHHhhhc
Q psy2159 175 SVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~---~~~v~~l~~~l~~~i 193 (194)
||++ ++|+++++++|.+.+
T Consensus 157 SA~~~~~g~gi~~L~~~l~~~~ 178 (370)
T 2elf_A 157 NKSAKNPFEGVDELKARINEVA 178 (370)
T ss_dssp CTTSSSTTTTHHHHHHHHHHHH
T ss_pred ccccCcCCCCHHHHHHHHHhhc
Confidence 9999 999999999998764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-22 Score=149.39 Aligned_cols=158 Identities=9% Similarity=0.038 Sum_probs=103.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccc---cCCCcceeEEEeCCEEEEEEEcCCCccch-----------hh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHM---PTLHPTSEELSMGDIVFTTHDLGGHVQAR-----------RV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~---~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-----------~~ 81 (194)
..+.++|+++|++|||||||++++.+.... ... .|.......+..++..+.+|||||+.... ..
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 346789999999999999999999987733 222 34455566778889999999999986542 22
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHH-HHHHhCC-CCCCCcEEEEee-CCCCCCCCCHHH---------HHhhhcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYEL-DNLLADD-ALTDVPILILGN-KIDIFDAASEDE---------VRHFFGL 149 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~-~~~~~~~-~~~~~piiiv~n-K~D~~~~~~~~e---------~~~~~~~ 149 (194)
...+++.+|++++|+|++. +.....++ ..+.... .....|+++++| |+|+... ...+ +...+..
T Consensus 99 ~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~ 174 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAA 174 (260)
T ss_dssp HHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHH
T ss_pred HHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHH
Confidence 2335788999999999986 33333222 2222110 011457777777 9999753 3333 2222222
Q ss_pred cCccCCCccCcccccCCcceEE--EEeccccCCChHHHHHHHhhhc
Q psy2159 150 YGLTTGKEFTPREILQMRPMEL--FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ..+...+ +++||++|.|++++|++|.+.+
T Consensus 175 ~--------------~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~ 206 (260)
T 2xtp_A 175 C--------------GGRICAFNNRAEGSNQDDQVKELMDCIEDLL 206 (260)
T ss_dssp T--------------TTCEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred h--------------CCeEEEecCcccccccHHHHHHHHHHHHHHH
Confidence 1 1111112 8899999999999999998764
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-21 Score=151.39 Aligned_cols=160 Identities=18% Similarity=0.164 Sum_probs=106.1
Q ss_pred CCe-EEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCcc---------chhhHhhhhh
Q psy2159 21 SGK-LLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFP 87 (194)
Q Consensus 21 ~~~-i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~ 87 (194)
.++ ++++|++|||||||+|++.+..+. ...+|.++....+.+++..+.+|||+|..+ +.+.+ ..+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHH-HGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHH-HHHH
Confidence 455 889999999999999999988762 467788888899999999999999999722 22333 3478
Q ss_pred cCCEEEEEEECCCCC--ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 88 AVDAIVFIIDASDRS--RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
.+|++++|+|++++. ...... .+..++......+.|+++|+||+|+.... ..+....+.... ....
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~~-~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~----------~~l~ 324 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETLQ-SSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLS----------KELY 324 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHHH-HHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHH----------HHHC
T ss_pred hCCEEEEEEECCCCcchHHHHHH-HHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHH----------HHhc
Confidence 899999999998865 233332 23333333233578999999999987642 222111110000 0010
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+++++||++|.|+++++++|.+.+
T Consensus 325 ~~~~~~~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 325 SPIFDVIPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp SCEEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCcCHHHHHHHHHHHh
Confidence 1225689999999999999999998754
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-22 Score=156.35 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=113.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--------CCCc------------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--------RTAQ------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.++.++|+++|++++|||||+++|.+. .+.. ...|.......+..++..+.+|||||+++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~ 87 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD 87 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence 457789999999999999999999873 2211 11233333445556678999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HH----HHHhhhcccC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-ED----EVRHFFGLYG 151 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~----e~~~~~~~~~ 151 (194)
+...+...+..+|++++|+|+++.. +.+...++..+.. .+.| +++++||+|+..+.. .+ ++.+.++...
T Consensus 88 f~~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 162 (405)
T 2c78_A 88 YIKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE 162 (405)
T ss_dssp GHHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhc
Confidence 9888888899999999999998865 4555566655443 3677 899999999975211 11 2333333322
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCC------------------hHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQG------------------FGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------------------v~~l~~~l~~~i 193 (194)
.....++++++||++|.| +.+++++|.+.+
T Consensus 163 ------------~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l 210 (405)
T 2c78_A 163 ------------FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 210 (405)
T ss_dssp ------------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred ------------ccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence 122346899999999987 888998887754
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=162.32 Aligned_cols=151 Identities=17% Similarity=0.202 Sum_probs=103.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--CCCc--------------------------------cccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--RTAQ--------------------------------HMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--~~~~--------------------------------~~~t~~~~~~~~~~~~ 64 (194)
++.++|+++|++++|||||+++|... .+.. ...|++.....++.++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 46789999999999999999999864 2221 2235555556677788
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHH-------HHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPE-------SKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
..+.+|||||+.++...+..+++.+|++++|+|+++ .+|+. ....+...... ...|+++++||+|+.+.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~ 159 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEP 159 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSS
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc---CCCeEEEEEEcccCCCc
Confidence 999999999999999888889999999999999998 45553 23333222221 22468999999999762
Q ss_pred -CC-------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 -AS-------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 -~~-------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
.. .+++.+.+.... .....++++++||++|.|+.++
T Consensus 160 ~~~~~~~~~~~~~i~~~~~~~~------------~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 160 PYDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTBC
T ss_pred cccHHHHHHHHHHHHHHHHHcC------------CCcCCceEEEeecccCcccccc
Confidence 11 123333333222 1222478999999999999743
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-22 Score=164.10 Aligned_cols=158 Identities=20% Similarity=0.124 Sum_probs=109.8
Q ss_pred HHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----------------------------------cccCCCccee
Q psy2159 13 LRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----------------------------------HMPTLHPTSE 58 (194)
Q Consensus 13 ~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----------------------------------~~~t~~~~~~ 58 (194)
..+...+++++|+++|++++|||||+++|.+..... ...|......
T Consensus 159 ~~l~~~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~ 238 (611)
T 3izq_1 159 AFVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTS 238 (611)
T ss_dssp --CCCCCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCC
T ss_pred HHHhccCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeE
Confidence 334445678999999999999999999998763221 2235566667
Q ss_pred EEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC---CCh---HHHHHHHHHHHhCCCCCCCcEEEEeeCC
Q psy2159 59 ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR---SRF---PESKYELDNLLADDALTDVPILILGNKI 132 (194)
Q Consensus 59 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~---~~~---~~~~~~~~~~~~~~~~~~~piiiv~nK~ 132 (194)
.+..++..+.+|||||++++...+..+++.+|++++|+|+++. .++ ......+... .. ....|+++|+||+
T Consensus 239 ~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~-~~--lgi~~iIVVvNKi 315 (611)
T 3izq_1 239 HFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLA-SS--LGIHNLIIAMNKM 315 (611)
T ss_dssp EEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHH-HT--TTCCEEEEEEECT
T ss_pred EEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHH-HH--cCCCeEEEEEecc
Confidence 7888889999999999999999889999999999999999873 111 1222222222 22 1234699999999
Q ss_pred CCCCC--CCHHHHH----hhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 133 DIFDA--ASEDEVR----HFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 133 D~~~~--~~~~e~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
|+.+. ...+++. ..+.... .....++++++||++|.|+.++
T Consensus 316 Dl~~~~~~~~~ei~~~l~~~l~~~g------------~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 316 DNVDWSQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHT------------CCGGGCEEEECCTTTCTTTSSC
T ss_pred cccchhHHHHHHHHHHHHHHHHhhc------------ccccCccEEeeecccCCCcccc
Confidence 98762 1122223 3332222 2223578999999999999865
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=156.51 Aligned_cols=154 Identities=18% Similarity=0.167 Sum_probs=106.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.+++++|+++|++++|||||+++|....-. ....|++.....++.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 357789999999999999999999654211 0122444445567778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCC---h---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSR---F---PESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...++.+|++++|+|+++... | .+....+..... .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8999999999999999988888999999999999988532 1 233333333322 3556 999999999864
Q ss_pred CC----CHHHH----HhhhcccCccCCCccCcccccC-CcceEEEEeccccCCChHHHHH
Q psy2159 137 AA----SEDEV----RHFFGLYGLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 137 ~~----~~~e~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.. ..+++ ...+.... .. ...++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVG------------FNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc------------ccccCCeeEEEeeccCCcccccccc
Confidence 21 12222 22222221 11 1247899999999999999554
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-23 Score=146.48 Aligned_cols=130 Identities=25% Similarity=0.394 Sum_probs=97.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhc----CCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPA----VDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~----~d~ii~ 94 (194)
.+.++|+++|++|||||||++++.+..+....++..++.. ..+.+..+.+||+||+..+...+..++.. +|++++
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~ 124 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIF 124 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-eeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEE
Confidence 5778999999999999999999999876542222222221 12356789999999999887777777765 899999
Q ss_pred EEECC-CCCChHHHHHHHHHHHhCC---CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 95 IIDAS-DRSRFPESKYELDNLLADD---ALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 95 v~d~~-~~~~~~~~~~~~~~~~~~~---~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
|+|++ +..++.....|+..++... ...+.|+++|+||+|+......+++.+.+..
T Consensus 125 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~ 183 (193)
T 2ged_A 125 MVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALES 183 (193)
T ss_dssp EEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHH
T ss_pred EEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHHH
Confidence 99999 7778888888888876542 2357999999999999887777777776643
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.7e-22 Score=149.58 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-------cccCC-----------------C---
Q psy2159 4 IWTKFREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTL-----------------H--- 54 (194)
Q Consensus 4 ~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~-----------------~--- 54 (194)
+...+++.+..++.. ....+|+++|.+|||||||+|++.+..+.. ..|+. +
T Consensus 7 ~~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~ 86 (299)
T 2aka_B 7 LVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKF 86 (299)
T ss_dssp HHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCB
T ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCccc
Confidence 334445555555543 467799999999999999999999987631 11210 0
Q ss_pred cce---------------------------eEEEeC-CEEEEEEEcCCCc-------------cchhhHhhhhhcCCEEE
Q psy2159 55 PTS---------------------------EELSMG-DIVFTTHDLGGHV-------------QARRVWRDYFPAVDAIV 93 (194)
Q Consensus 55 ~~~---------------------------~~~~~~-~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~ii 93 (194)
.+. ..+... ...+.+|||||.. .+......+++.++.++
T Consensus 87 tt~~~~~~~~~~~~~~i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 166 (299)
T 2aka_B 87 TDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLI 166 (299)
T ss_dssp CCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEE
T ss_pred CCHHHHHHHHHHHHHHhcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEE
Confidence 000 001111 3689999999964 23456667788888776
Q ss_pred -EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 94 -FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 94 -~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+|+|+++..+......++..+ . ..+.|+++|+||+|+.+... .+.+...+.. ......+
T Consensus 167 l~v~d~~~~~~~~~~~~~~~~~-~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~--------------~~~~~~~ 228 (299)
T 2aka_B 167 LAVSPANSDLANSDALKIAKEV-D---PQGQRTIGVITKLDLMDEGTDARDVLENKLLP--------------LRRGYIG 228 (299)
T ss_dssp EEEEESSSCGGGCHHHHHHHHH-C---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSC--------------CTTCEEE
T ss_pred EEEecCCcchhhhHHHHHHHHh-C---CCCCeEEEEEEccccCCCCchHHHHHhCCcCc--------------CCCCcEE
Confidence 689998754333322333333 2 25789999999999976322 2222111100 1112357
Q ss_pred EEEeccccCCChHHHHHHHhh
Q psy2159 171 LFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
++++||++|.|++++++++.+
T Consensus 229 v~~~SA~~~~gi~~l~~~l~~ 249 (299)
T 2aka_B 229 VVNRSQKDIDGKKDITAALAA 249 (299)
T ss_dssp CCCCCCBCTTSCBCHHHHHHH
T ss_pred EECCChhhccccccHHHHHHH
Confidence 899999999999999999765
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-22 Score=159.19 Aligned_cols=153 Identities=18% Similarity=0.077 Sum_probs=106.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.++.++|+++|++++|||||+++|.+.... ....|.......+..+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 567899999999999999999999755110 0123455556667778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCCh------HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRF------PESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..+.+|||||++++...+..+++.+|++++|+|+++..++ ......+...... ...|+++++||+|+.+.
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~---~~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL---GIHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGGTT
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc---CCCcEEEEEECcCcccc
Confidence 89999999999999999999999999999999999886432 2222222222221 23579999999998762
Q ss_pred --CCHHHHHhhh----cccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 138 --ASEDEVRHFF----GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 138 --~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
...+++.+.+ .... .....++++++||++|.|++++
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIG------------FFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHT------------CCGGGEEEEECCSSSCTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHcC------------CCcccceEEEEeeecCCCcccc
Confidence 2223333333 2222 2223578999999999999853
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-22 Score=156.21 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=110.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-------CCCc------------cccCCCcceeEEEeCCEEEEEEEcCCCccchh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-------RTAQ------------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR 80 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-------~~~~------------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~ 80 (194)
++++|+++|++++|||||+++|.+. .+.. ...|++.....+..++..+.+|||||++++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5689999999999999999999873 1111 11133333334555668999999999999888
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-----HHHHHhhhcccCccC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-----EDEVRHFFGLYGLTT 154 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-----~~e~~~~~~~~~~~~ 154 (194)
.+...++.+|++++|+|+++.. ..+....+..+.. .+.| +++++||+|+..+.. .+++.+.++...
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~--- 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG--- 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHhhHhhCCEEEEEEECCCCC-CHHHHHHHHHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC---
Confidence 8888899999999999998864 4444555544432 4677 789999999975211 123334443322
Q ss_pred CCccCcccccCCcceEEEEeccccCCC----------hHHHHHHHhhhc
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKRQG----------FGNGFRWLANYI 193 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~----------v~~l~~~l~~~i 193 (194)
.....++++++||++|.| +.++++.|.+.+
T Consensus 154 ---------~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~ 193 (397)
T 1d2e_A 154 ---------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI 193 (397)
T ss_dssp ---------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred ---------CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence 222346899999999764 899999998755
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-23 Score=165.03 Aligned_cols=160 Identities=21% Similarity=0.248 Sum_probs=112.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+++.+|+++|++++|||||++++.+..+.. ...|.......+..++..+.+|||||++.+...+...+..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 467899999999999999999998754432 12244444445566778899999999999999888889999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++.. ..+....+..... .+.|+++++||+|+.... .+++...+.... .....+ ...++++++|
T Consensus 82 Vda~~g~-~~qT~e~l~~~~~----~~vPiIVviNKiDl~~~~-~~~v~~~l~~~~-------~~~~~~-~~~~~~v~vS 147 (501)
T 1zo1_I 82 VAADDGV-MPQTIEAIQHAKA----AQVPVVVAVNKIDKPEAD-PDRVKNELSQYG-------ILPEEW-GGESQFVHVS 147 (501)
T ss_dssp EETTTBS-CTTTHHHHHHHHH----TTCCEEEEEECSSSSTTC-CCCTTCCCCCCC-------CCTTCC-SSSCEEEECC
T ss_pred eecccCc-cHHHHHHHHHHHh----cCceEEEEEEeccccccC-HHHHHHHHHHhh-------hhHHHh-CCCccEEEEe
Confidence 9998743 2333333333322 578999999999996531 112222221110 001111 1247899999
Q ss_pred cccCCChHHHHHHHhhh
Q psy2159 176 VLKRQGFGNGFRWLANY 192 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~ 192 (194)
|++|.|++++++++..+
T Consensus 148 AktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 148 AKAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTTCTTCTTHHHHTTTT
T ss_pred eeeccCcchhhhhhhhh
Confidence 99999999999998753
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=159.16 Aligned_cols=154 Identities=17% Similarity=0.156 Sum_probs=105.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC--C------ccc----------cCCCcceeEEEeC-----CEEEEEEEcCCCcc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT--A------QHM----------PTLHPTSEELSMG-----DIVFTTHDLGGHVQ 77 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~--~------~~~----------~t~~~~~~~~~~~-----~~~~~~~d~~g~~~ 77 (194)
-.+|+++|+.++|||||++++..... . .+. .|+......+.+. +..+++|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 35899999999999999999986321 1 111 1222222344443 27899999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCc
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKE 157 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~ 157 (194)
+...+...++.+|++++|+|+++..+......|.... . .+.|+++++||+|+.... .++..+.+....
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~-~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~l------ 151 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM-E----MDLEVVPVLNKIDLPAAD-PERVAEEIEDIV------ 151 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEeeeccCccccc-HHHHHHHHHHHh------
Confidence 9999999999999999999999977766665554443 3 478999999999997743 333333332211
Q ss_pred cCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 158 FTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 158 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++++++.+.+
T Consensus 152 -------g~~~~~vi~vSAktg~GI~~Ll~~I~~~l 180 (599)
T 3cb4_D 152 -------GIDATDAVRCSAKTGVGVQDVLERLVRDI 180 (599)
T ss_dssp -------CCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred -------CCCcceEEEeecccCCCchhHHHHHhhcC
Confidence 11113489999999999999999998876
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.3e-21 Score=158.00 Aligned_cols=155 Identities=19% Similarity=0.162 Sum_probs=108.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC--CC------cc----------ccCCCcceeEEEeC---C--EEEEEEEcCCCc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR--TA------QH----------MPTLHPTSEELSMG---D--IVFTTHDLGGHV 76 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~--~~------~~----------~~t~~~~~~~~~~~---~--~~~~~~d~~g~~ 76 (194)
+..+|+++|+.++|||||++++.... .. .+ ..|+......+.+. + ..+++|||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 34589999999999999999997631 11 11 11222222344442 2 789999999999
Q ss_pred cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCC
Q psy2159 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 77 ~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~ 156 (194)
++...+..+++.+|++++|+|+++..+......|.... . .+.|+++++||+|+.... .++..+.+....
T Consensus 85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~-~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l----- 153 (600)
T 2ywe_A 85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAV-E----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL----- 153 (600)
T ss_dssp GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH-H----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS-----
T ss_pred hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH-H----CCCCEEEEEeccCccccC-HHHHHHHHHHhh-----
Confidence 99988888899999999999999977666655554433 3 478999999999997643 444333332211
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.....++++||++|.|++++++++.+.+
T Consensus 154 --------g~~~~~vi~vSAktg~GI~~Lle~I~~~l 182 (600)
T 2ywe_A 154 --------GLDPEEAILASAKEGIGIEEILEAIVNRI 182 (600)
T ss_dssp --------CCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred --------CCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence 11123589999999999999999998876
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=154.89 Aligned_cols=153 Identities=19% Similarity=0.131 Sum_probs=104.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC---c----------c-----------------------ccCCCcceeEEEe
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA---Q----------H-----------------------MPTLHPTSEELSM 62 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~---~----------~-----------------------~~t~~~~~~~~~~ 62 (194)
.+.++|+++|++++|||||+++|.+.... . . ..|+......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999865311 0 0 1122333345566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--H
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--E 140 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~ 140 (194)
++..+.+|||||++++...+..++..+|++++|+|+++.. ..+...++..+... ...|+++++||+|+.+... .
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~---~~~~iIvviNK~Dl~~~~~~~~ 177 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL---GIKHIVVAINKMDLNGFDERVF 177 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT---TCCEEEEEEECTTTTTSCHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc---CCCeEEEEEEcCcCCcccHHHH
Confidence 7789999999999999888888899999999999998864 44445544443322 2246999999999976211 1
Q ss_pred HHHHhhhcccCccCCCccCcccccC--CcceEEEEeccccCCChHHH
Q psy2159 141 DEVRHFFGLYGLTTGKEFTPREILQ--MRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 141 ~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~~l 185 (194)
+++.+.+.... ...+ ...++++++||++|.|++++
T Consensus 178 ~~i~~~~~~~~----------~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 178 ESIKADYLKFA----------EGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHH----------HTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHH----------HHhCCCccCceEEEEeccCCCCcccc
Confidence 12222221110 0012 34478999999999999874
|
| >4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-22 Score=150.93 Aligned_cols=143 Identities=19% Similarity=0.250 Sum_probs=104.1
Q ss_pred cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCC
Q psy2159 51 PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDAL 120 (194)
Q Consensus 51 ~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~ 120 (194)
+|.|.....+..++..+++||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 3566666778888899999999999999999999999999999999998 677899999999999887777
Q ss_pred CCCcEEEEeeCCCCCCC-----------------CCHHHHHhhhcccC------ccCCCccC----cccccCCcceEEEE
Q psy2159 121 TDVPILILGNKIDIFDA-----------------ASEDEVRHFFGLYG------LTTGKEFT----PREILQMRPMELFM 173 (194)
Q Consensus 121 ~~~piiiv~nK~D~~~~-----------------~~~~e~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~~ 173 (194)
.+.|+++++||+|+..+ ...++..+++.... ........ .......+.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 88999999999997531 12333333322111 00000000 00000114578999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+++.||+.+|+.+.+.|
T Consensus 307 TsA~dt~nv~~vF~~v~~~I 326 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVI 326 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHH
Confidence 99999999999999987754
|
| >2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=153.51 Aligned_cols=129 Identities=20% Similarity=0.318 Sum_probs=91.3
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC----------CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
...+.+||++|+++++..|..++++++++|+|+|++ +.+++.+...|+..+.......+.|+++++||+|
T Consensus 182 ~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~D 261 (354)
T 2xtz_A 182 GEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFD 261 (354)
T ss_dssp --EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHH
T ss_pred ceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcc
Confidence 478999999999999999999999999999999998 7778999999999998765567899999999999
Q ss_pred CCCC----CC-------------------HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHh
Q psy2159 134 IFDA----AS-------------------EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190 (194)
Q Consensus 134 ~~~~----~~-------------------~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 190 (194)
+..+ .+ .++..+.+........... .......+.+.+++|||+++.||+++|+++.
T Consensus 262 L~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~-~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 262 IFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQN-TAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHT-CCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred hhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhcc-ccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 7431 11 2233332211000000000 0000012345679999999999999999998
Q ss_pred hhc
Q psy2159 191 NYI 193 (194)
Q Consensus 191 ~~i 193 (194)
+.+
T Consensus 341 ~~I 343 (354)
T 2xtz_A 341 ETL 343 (354)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=142.77 Aligned_cols=157 Identities=10% Similarity=0.105 Sum_probs=101.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc-c----ccCCCcceeEEEeCCEEEEEEEcCCCc-----------cchhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-H----MPTLHPTSEELSMGDIVFTTHDLGGHV-----------QARRV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~----~~t~~~~~~~~~~~~~~~~~~d~~g~~-----------~~~~~ 81 (194)
..+.++|+++|++|||||||+|++.+..+.. . ..|.......+..++..+.+|||||.. ++...
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999987642 1 345555667788899999999999943 33444
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHH--------HHHhhhcccCc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASED--------EVRHFFGLYGL 152 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~--------e~~~~~~~~~~ 152 (194)
+...++++|++++|+|+++... ....++..+.... .....|+++|+||+|+......+ ++....+...
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~- 182 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG- 182 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS-
T ss_pred HHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC-
Confidence 5555678899999999976443 2233333333211 01246999999999987643322 3333333322
Q ss_pred cCCCccCcccccCCcceEEEEeccc-----cCCChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVL-----KRQGFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~-----~~~~v~~l~~~l~~~i 193 (194)
..++.+++. .+.++.++++.+.+.+
T Consensus 183 ----------------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~ 212 (239)
T 3lxx_A 183 ----------------DRYCALNNKATGAEQEAQRAQLLGLIQRVV 212 (239)
T ss_dssp ----------------SSEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CEEEEEECCCCccccHHHHHHHHHHHHHHH
Confidence 235555544 3468999998876643
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=160.24 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=106.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-----CCCcceeEEE----------------eCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-----TLHPTSEELS----------------MGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-----t~~~~~~~~~----------------~~~~~~~~~d~~g~~~ 77 (194)
.++.+|+++|++++|||||++++.+..+....+ +.+....... +....+.+|||||+.+
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 467899999999999999999998765433222 2222211110 1123699999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--------------HHHH
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--------------EDEV 143 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--------------~~e~ 143 (194)
+...+...++.+|++++|+|+++.-. .+....+..+.. .+.|+++++||+|+..... .+++
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~-~qT~e~l~~l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v 157 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFK-PQTQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCcc-HhHHHHHHHHHH----cCCeEEEEecccccccccccccCCchHHHHHHhHHHH
Confidence 99888888899999999999998421 222333333322 5789999999999965211 0111
Q ss_pred -----------HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 144 -----------RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 144 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+....-.. +.+.... .....++++++||++|.|+++++++|.+.
T Consensus 158 ~~~~~e~i~ei~~~L~e~gl~~-e~~~~l~-~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 158 QQKLDTKVYELVGKLHEEGFES-ERFDRVT-DFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEE-EEGGGCS-CTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCcch-HHHHHHH-hccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 11111110000 0000000 01345789999999999999999999864
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=144.60 Aligned_cols=156 Identities=16% Similarity=0.185 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--cc-------ccCCCcceeEEEe--CC--EEEEEEEcCCCcc-------ch
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--QH-------MPTLHPTSEELSM--GD--IVFTTHDLGGHVQ-------AR 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~~-------~~t~~~~~~~~~~--~~--~~~~~~d~~g~~~-------~~ 79 (194)
..++|+++|.+|+|||||+|++++.... .+ .+|.+.+...... ++ ..+.+|||||... +.
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 3579999999999999999998876543 22 5667666655544 33 5899999999732 22
Q ss_pred hhH-------hhhhh-------------cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC
Q psy2159 80 RVW-------RDYFP-------------AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139 (194)
Q Consensus 80 ~~~-------~~~~~-------------~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~ 139 (194)
.+. ..++. .+|+++++++.+..........++..+ .. ++|+++|+||+|+.....
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l-~~----~~pvi~V~nK~D~~~~~e 161 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRL-HE----KVNIIPLIAKADTLTPEE 161 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHH-TT----TSCEEEEESSGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHH-hc----cCCEEEEEeccCCCCHHH
Confidence 222 22232 377999999776533233333344443 32 789999999999865322
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+..+.+... .....++++++||++++|+++++++|.+.+
T Consensus 162 ~~~~~~~i~~~-------------l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 162 CQQFKKQIMKE-------------IQEHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHH-------------HHHTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHH-------------HHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 22222222111 111236789999999999999999998765
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=152.84 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=106.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--CCC--------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--RTA--------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 63 (194)
..++++|+++|++++|||||+++|.+. .+. ....|++.....+..+
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456789999999999999999999864 111 1234666666777888
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...+..+|++++|+|+++.. +|+ +....+..... .+.| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEcccccc
Confidence 899999999999999988888899999999999998742 221 33333333322 3455 999999999974
Q ss_pred C--CCHHH----HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHH
Q psy2159 137 A--ASEDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNG 185 (194)
Q Consensus 137 ~--~~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 185 (194)
. ...++ +.+.+.... .....++++++||++|.|+.++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g------------~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcC------------CCccCceEEEeecccCcCcccc
Confidence 1 11122 333332222 1112478999999999998743
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.2e-21 Score=155.88 Aligned_cols=153 Identities=17% Similarity=0.141 Sum_probs=93.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC--CCC--------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND--RTA--------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.++.++|+++|+.++|||||+++|... .+. ....|++.....+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 356789999999999999999998742 111 1234555555677778
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---ChH---HHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RFP---ESKYELDNLLADDALTDVP-ILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~ 136 (194)
+..+.+|||||++++...+...++.+|++++|+|+++.. +|. +....+..... .+.| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~----~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH----cCCCEEEEEEECccCCC
Confidence 899999999999999888888899999999999998852 332 23333332222 4566 999999999964
Q ss_pred C-CCHH-------HHHhhhccc-CccCCCccCcccccC-CcceEEEEeccccCCChHHHH
Q psy2159 137 A-ASED-------EVRHFFGLY-GLTTGKEFTPREILQ-MRPMELFMCSVLKRQGFGNGF 186 (194)
Q Consensus 137 ~-~~~~-------e~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~~l~ 186 (194)
. .+.+ ++...+... . .. ...++++++||++|.|+.+++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g------------~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAG------------YNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcC------------CCccCCceEEeccccccccccccc
Confidence 2 2221 233333321 1 11 124789999999999998754
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=160.18 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=111.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCC-------CC--------cccc----CCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDR-------TA--------QHMP----TLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~-------~~--------~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
..+.++|+++|++++|||||+++|.+.. +. .... |+......+..++..+.+|||||++++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567899999999999999999998631 10 0111 222223345556789999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-H----HHHHhhhcccCc
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-E----DEVRHFFGLYGL 152 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~----~e~~~~~~~~~~ 152 (194)
...+...++.+|++++|+|+++.. +.+...++..+.. .+.| +++++||+|+..+.. . +++.+.+....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G- 446 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD- 446 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc-
Confidence 888888899999999999998864 4455555544433 3677 789999999975211 1 23334443322
Q ss_pred cCCCccCcccccCCcceEEEEeccccC--------CChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKR--------QGFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~--------~~v~~l~~~l~~~i 193 (194)
.....++++++||++| .|+.+++++|.+.+
T Consensus 447 -----------~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 447 -----------FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp -----------SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred -----------ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 2223478999999999 47999999998754
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-22 Score=164.20 Aligned_cols=159 Identities=17% Similarity=0.200 Sum_probs=90.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC----------------------------------ccccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA----------------------------------QHMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~----------------------------------~~~~t~~~~~~~~~~~~ 64 (194)
++.++|+++|++++|||||+++|+..... ....|.......+..++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 46678999999999999999999642100 11224444455666677
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC---Ch---HHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS---RF---PESKYELDNLLADDALTDVP-ILILGNKIDIFDA 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~---~~---~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~ 137 (194)
..+.+|||||+.++...+...+..+|++++|+|+++.. ++ ......+..+.. .+.| +|+|+||+|+...
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~----lgip~iIvviNKiDl~~~ 330 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA----LGISEIVVSVNKLDLMSW 330 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH----SSCCCEEEEEECGGGGTT
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH----cCCCeEEEEEeccccccc
Confidence 89999999999999888788889999999999998743 22 233333333322 3455 9999999998651
Q ss_pred --CCH----HHHHhhh-cccCccCCCccCcccccCCcceEEEEeccccCCChH--------------HHHHHHhhhc
Q psy2159 138 --ASE----DEVRHFF-GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG--------------NGFRWLANYI 193 (194)
Q Consensus 138 --~~~----~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~--------------~l~~~l~~~i 193 (194)
... +++...+ .... .....++++++||++|.|+. .|++.|.+.+
T Consensus 331 ~~~~~~~i~~el~~~l~~~~g------------~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 331 SEDRFQEIKNIVSDFLIKMVG------------FKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp CHHHHHHHHHHHHHHHTTTSC------------CCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred cHHHHHHHHHHHHHHHHHhhC------------CCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 111 2233333 2222 23345789999999999998 7888886643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-19 Score=138.96 Aligned_cols=174 Identities=16% Similarity=0.184 Sum_probs=107.8
Q ss_pred cHHHHHHHHHHHhCCc-CCCCeEEEEcCCCCChHHHHHHHHcCCC-Cccc--cCCCcc----------------------
Q psy2159 3 EIWTKFREVLLRLGLW-KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHM--PTLHPT---------------------- 56 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~--~t~~~~---------------------- 56 (194)
.+...+++.+..++.. ....+|+++|.+|||||||+|++.+..+ +... .|..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~ 84 (315)
T 1jwy_B 5 PVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEF 84 (315)
T ss_dssp HHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhh
Confidence 4556677777777765 5677999999999999999999998876 2100 011110
Q ss_pred -----------------------------------eeE---EEeCCEEEEEEEcCCCcc-------------chhhHhhh
Q psy2159 57 -----------------------------------SEE---LSMGDIVFTTHDLGGHVQ-------------ARRVWRDY 85 (194)
Q Consensus 57 -----------------------------------~~~---~~~~~~~~~~~d~~g~~~-------------~~~~~~~~ 85 (194)
... ...++..+.+|||||..+ +......+
T Consensus 85 ~~~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 164 (315)
T 1jwy_B 85 LHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAY 164 (315)
T ss_dssp SSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHH
T ss_pred hcccccccCCHHHHHHHHHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHH
Confidence 000 111336799999999753 34456667
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC--HHHHHhhhcccCccCCCccCcccc
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--EDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
+..+|++++|+|.++..........+...+.. .+.|+++|+||+|+..... .+.+...+..
T Consensus 165 ~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~---~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~-------------- 227 (315)
T 1jwy_B 165 IKKQNAIIVAVTPANTDLANSDALQLAKEVDP---EGKRTIGVITKLDLMDKGTDAMEVLTGRVIP-------------- 227 (315)
T ss_dssp HHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS---SCSSEEEEEECTTSSCSSCCCHHHHTTSSSC--------------
T ss_pred HcCCCeEEEEEEecCcchhhhHHHHHHHHhCC---CCCcEEEEEcCcccCCcchHHHHHHhCCCcc--------------
Confidence 88999999999974432111112123333332 5789999999999876332 2222211111
Q ss_pred cCCcceEEEEecccc---CCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLK---RQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~---~~~v~~l~~~l~~~i 193 (194)
......++..+|+.+ +.|+.++++.+.+.+
T Consensus 228 ~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~ 260 (315)
T 1jwy_B 228 LTLGFIGVINRSQEDIIAKKSIRESLKSEILYF 260 (315)
T ss_dssp CTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHH
T ss_pred CCCCeEEEecCChhhhccCCCHHHHHHHHHHHH
Confidence 112334556667766 899999999876653
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-18 Score=142.04 Aligned_cols=114 Identities=21% Similarity=0.199 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-------------------------ccccCCCcceeEEEeCCEEEEEEEcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-------------------------QHMPTLHPTSEELSMGDIVFTTHDLGG 74 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-------------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g 74 (194)
+..+|+++|++|+|||||++++...... ....|+......+.+++..+.+|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4579999999999999999999863110 011133334456778889999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
+.++......+++.+|++++|+|+++... ......+... .. .+.|+++++||+|+....
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~-~~t~~~~~~~-~~---~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVE-DRTRKLMEVT-RL---RDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSC-HHHHHHHHHH-TT---TTCCEEEEEECTTSCCSC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccch-HHHHHHHHHH-HH---cCCCEEEEEcCcCCcccc
Confidence 99998888888999999999999988542 3333333333 22 578999999999997643
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=147.18 Aligned_cols=114 Identities=18% Similarity=0.123 Sum_probs=87.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--C------------C-------ccccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--T------------A-------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~------------~-------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.+..+|+++|++|+|||||++++.... + . ...+|+......+.+++..+.+|||||+.+
T Consensus 10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 89 (691)
T 1dar_A 10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD 89 (691)
T ss_dssp GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence 356789999999999999999998321 1 0 234466666677888899999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+...+..+++.+|++++|+|+++..+...... |..+.. .+.|+++++||+|+...
T Consensus 90 f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 90 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 99988999999999999999998776655443 334433 47899999999999764
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-19 Score=130.30 Aligned_cols=154 Identities=21% Similarity=0.253 Sum_probs=96.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCcce--eEEEeCCEEEEEEEcCCCcc----------chhhHhhh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHPTS--EELSMGDIVFTTHDLGGHVQ----------ARRVWRDY 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~----------~~~~~~~~ 85 (194)
.+..+++++|++|||||||++++.+..+ ..+.++.+.+. ..+.+++ .+.+||+||+.. +......+
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 102 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALGEY 102 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHHHH
Confidence 3556899999999999999999998763 34455555443 2334444 678999999742 22222333
Q ss_pred h---hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCCcc
Q psy2159 86 F---PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 86 ~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~~~ 158 (194)
+ ..++++++++|+++..+... ..+..++.. .+.|+++++||+|+...-. .+.+...+..
T Consensus 103 ~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~--------- 168 (210)
T 1pui_A 103 LEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLA--------- 168 (210)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---------
T ss_pred HHhhhcccEEEEEEECCCCCchhH--HHHHHHHHH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHh---------
Confidence 3 46889999999988765432 122222222 5689999999999865211 1233333321
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+.++++||+++.|+++++++|.+.+
T Consensus 169 ------~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 169 ------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp ------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------cCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 11236789999999999999999998754
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=141.52 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=110.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-EEEEEEEcCCCccc----hh---hHhhhhhcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-IVFTTHDLGGHVQA----RR---VWRDYFPAVD 90 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~d~~g~~~~----~~---~~~~~~~~~d 90 (194)
..++++|++|||||||++++.+.... ....|..++...+..++ ..+.+||+||..+. .. .+......++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35789999999999999999987532 34556777888888876 88999999997432 11 1222355799
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
.+++++|++ ...+..+..+..++.... .....|.++++||+|+......+++.+.+.. ..+
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~-----------------~g~ 299 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGL 299 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTS
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHh-----------------cCC
Confidence 999999998 556666666655554431 1135799999999998654222233333322 125
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++.+||++++|+++++++|.+.+
T Consensus 300 ~vi~iSA~~g~gi~eL~~~i~~~l 323 (416)
T 1udx_A 300 AVLPVSALTGAGLPALKEALHALV 323 (416)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCccCHHHHHHHHHHHH
Confidence 799999999999999999998765
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-19 Score=131.15 Aligned_cols=125 Identities=17% Similarity=0.153 Sum_probs=88.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccc----cCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhh--------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM----PTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYF-------- 86 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~-------- 86 (194)
.++++|+++|++|+|||||+|++.+....... .|.......+..++..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 47899999999999999999999998764322 245555667788999999999999987654332222
Q ss_pred -hcCCEEEEEEECCCCCChHHH-HHHHHHHHhCC-CCCCCcEEEEeeCCCCCC--CCCHHHHH
Q psy2159 87 -PAVDAIVFIIDASDRSRFPES-KYELDNLLADD-ALTDVPILILGNKIDIFD--AASEDEVR 144 (194)
Q Consensus 87 -~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piiiv~nK~D~~~--~~~~~e~~ 144 (194)
..+|++++|++++... +... ..++..+.... .....|+++|+||+|+.+ ....++..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~ 175 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFS 175 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHH
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHH
Confidence 2789999999987755 5444 34555444321 111259999999999853 34554443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.9e-18 Score=143.04 Aligned_cols=111 Identities=18% Similarity=0.129 Sum_probs=84.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+..+++++|+.|+|||||++++.+.... . ...|.......+...+..+++|||||+.++
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568889999999999999999843321 0 112333344566677899999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
...+..+++.+|++++|+|+++... .....++..+.. .+.|+++++||+|+.
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~-~qt~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQ-VGTERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSC-HHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccc-hhHHHHHHHHHH----ccCCEEEEecCCchh
Confidence 9888889999999999999877543 334455555543 478999999999987
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-20 Score=143.44 Aligned_cols=151 Identities=11% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--cc--------ccCCCcceeEE--EeCC--EEEEEEEcCCC-------cc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QH--------MPTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~--------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 77 (194)
...++|+++|++|+|||||++++++.... .+ .+|.+...... ..++ ..+.+|||||+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 45678999999999999999998765432 11 13433333222 2334 47999999999 55
Q ss_pred chhhHh-------hhhhcC-------------CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWR-------DYFPAV-------------DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~-------~~~~~~-------------d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..++. .++..+ |+++|+++.. ..++......+...+. .+.|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCCCH
Confidence 555544 444332 3455555532 3456666644444332 57899999999998753
Q ss_pred CCHH----HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 138 ASED----EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 138 ~~~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.... ++.+.++. ..++++++||+++.+ ++.|.++.+.
T Consensus 190 ~ev~~~k~~i~~~~~~-----------------~~i~~~~~Sa~~~~~-~e~~~~l~~~ 230 (361)
T 2qag_A 190 KERERLKKRILDEIEE-----------------HNIKIYHLPDAESDE-DEDFKEQTRL 230 (361)
T ss_dssp HHHHHHHHHHHHHTTC-----------------C-CCSCCCC----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------------CCCCEEeCCCcCCCc-chhHHHHHHH
Confidence 2221 22233322 236899999999988 6666666554
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=135.78 Aligned_cols=170 Identities=15% Similarity=0.141 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCCC-cc--ccCCCcce--------------------
Q psy2159 3 EIWTKFREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QH--MPTLHPTS-------------------- 57 (194)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~--~~t~~~~~-------------------- 57 (194)
.++..+++.+..++.. ....+|+++|.++||||||+|++.+.++. .. ..|..+..
T Consensus 11 ~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~ 90 (353)
T 2x2e_A 11 PLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKK 90 (353)
T ss_dssp HHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcc
Confidence 3445566666666643 46679999999999999999999998763 11 11111110
Q ss_pred -------------------------------eEEEe-CCEEEEEEEcCCCc-------------cchhhHhhhhhcCCEE
Q psy2159 58 -------------------------------EELSM-GDIVFTTHDLGGHV-------------QARRVWRDYFPAVDAI 92 (194)
Q Consensus 58 -------------------------------~~~~~-~~~~~~~~d~~g~~-------------~~~~~~~~~~~~~d~i 92 (194)
-.+.. +...+.+|||||.. .+..+...++..++.+
T Consensus 91 ~tt~~~v~~~i~~~~~~i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (353)
T 2x2e_A 91 FTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCL 170 (353)
T ss_dssp BCCHHHHHHHHHHHHHHHHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEE
T ss_pred cCCHHHHHHHHHHHHHHhcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeE
Confidence 01111 24679999999963 2344556667666655
Q ss_pred EE-EEECCCCCChHHHH--HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 93 VF-IIDASDRSRFPESK--YELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 93 i~-v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
++ |+|.+. .+.... .++..+ ...+.|+++|+||+|+.+... ..++ ++... .......
T Consensus 171 iL~v~~a~~--~~~~~~~~~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~---~~~~~----------~~l~~~~ 231 (353)
T 2x2e_A 171 ILAVSPANS--DLANSDALKVAKEV----DPQGQRTIGVITKLDLMDEGTDARDV---LENKL----------LPLRRGY 231 (353)
T ss_dssp EEEEEETTS--CGGGCHHHHHHHHH----CTTCTTEEEEEECGGGSCTTCCCHHH---HTTCS----------SCCTTCE
T ss_pred EEEEecCCC--ccchhHHHHHHHHh----CcCCCceEEEeccccccCcchhHHHH---HhCCc----------ccccCCc
Confidence 55 556544 233322 223332 225789999999999976322 1222 21110 0011223
Q ss_pred eEEEEeccccCCChHHHHHHHhh
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..++++||+++.|++++++++.+
T Consensus 232 ~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 232 IGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp EECCCCCHHHHHTTCCHHHHHHH
T ss_pred eEEEeCCcccccccccHHHHHHH
Confidence 57899999999999999998865
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=143.54 Aligned_cols=164 Identities=20% Similarity=0.238 Sum_probs=105.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc--cccCC-Ccc--------eeEEE-------------------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ--HMPTL-HPT--------SEELS------------------------- 61 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~--~~~t~-~~~--------~~~~~------------------------- 61 (194)
..+.++|+++|.+|+|||||+|+|.+..... ..|+. .++ ..+..
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 4578899999999999999999999887542 22222 110 00111
Q ss_pred ---------------------eCC----EEEEEEEcCCCcc---chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHH
Q psy2159 62 ---------------------MGD----IVFTTHDLGGHVQ---ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDN 113 (194)
Q Consensus 62 ---------------------~~~----~~~~~~d~~g~~~---~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~ 113 (194)
.+. ..+.+|||||... .......++..+|++++|+|++++.+......+. .
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~-~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLE-N 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHH-H
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHH-H
Confidence 111 3589999999765 3455667789999999999999877666554433 3
Q ss_pred HHhCCCCCCCcEEEEeeCCCCCCCC--CH---HH-------HHhh----hcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 114 LLADDALTDVPILILGNKIDIFDAA--SE---DE-------VRHF----FGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 114 ~~~~~~~~~~piiiv~nK~D~~~~~--~~---~e-------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
.+.. .+.|+++|+||+|+.... +. ++ +... +.... ...+ ......+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~--~~~g------~~~~~~~v~~vSAk 293 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC--TVEG------QNIYDERVFELSSI 293 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG--BSSS------CBCGGGTEEECCHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh--cccc------cccCCCcEEEEeCh
Confidence 3322 367899999999986421 11 11 2111 11100 0000 01123468999999
Q ss_pred --------------cCCChHHHHHHHhhhc
Q psy2159 178 --------------KRQGFGNGFRWLANYI 193 (194)
Q Consensus 178 --------------~~~~v~~l~~~l~~~i 193 (194)
++.|++++++++.+.+
T Consensus 294 ~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l 323 (695)
T 2j69_A 294 QALRRRLKNPQADLDGTGFPKFMDSLNTFL 323 (695)
T ss_dssp HHHHHHHHCTTCCCTTSSHHHHHHHHHHHH
T ss_pred HHHHhhccCchhhhhccCHHHHHHHHHHHH
Confidence 9999999999987754
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-17 Score=139.33 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=85.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--CC-------------------ccccCCCcceeEEEeCC-------EEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--TA-------------------QHMPTLHPTSEELSMGD-------IVFTTH 70 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~~ 70 (194)
.+..+|+++|+.|+|||||+++|.... +. ....|+......+.+++ ..+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456799999999999999999997531 11 01223333444566665 899999
Q ss_pred EcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 71 d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
||||+.++...+..+++.+|++++|+|+++...... ...|..... .+.|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt-~~~~~~~~~----~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS-ETVWRQANK----YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH-HHHHHHHHH----cCCCEEEEEeCCCcccc
Confidence 999999998888889999999999999998654333 334444332 47899999999998763
|
| >1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=138.99 Aligned_cols=133 Identities=18% Similarity=0.275 Sum_probs=101.8
Q ss_pred CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCC----------CCChHHHHHHHHHHHhCCCCC
Q psy2159 52 TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASD----------RSRFPESKYELDNLLADDALT 121 (194)
Q Consensus 52 t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~ 121 (194)
|+|.....+.+++..+.+||++|+++++..|..++++++++|+|+|+++ .++|.....|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 5566666778889999999999999999999999999999999999999 889999999999998876678
Q ss_pred CCcEEEEeeCCCCCCC-----C-C--------------------------HHHHHhhhcccCccCCCccCcccc-----c
Q psy2159 122 DVPILILGNKIDIFDA-----A-S--------------------------EDEVRHFFGLYGLTTGKEFTPREI-----L 164 (194)
Q Consensus 122 ~~piiiv~nK~D~~~~-----~-~--------------------------~~e~~~~~~~~~~~~~~~~~~~~~-----~ 164 (194)
+.|++|++||+|+... . + .++...++... +... .
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~k---------F~~~~~~~~~ 354 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDE---------FLRISTASGD 354 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHH---------HHHHHHTSCT
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHH---------HHHhhccccc
Confidence 8999999999997431 0 0 11111111000 0000 0
Q ss_pred CCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 165 QMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 165 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
....+.+++|||+++.||+++|+++.+.+
T Consensus 355 ~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 355 GRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp TSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 11346788999999999999999987654
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=138.22 Aligned_cols=114 Identities=18% Similarity=0.178 Sum_probs=87.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc--CCCC-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN--DRTA-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
.+..+|+++|++|+|||||++++.. ..+. ....|+......+.+++..+.+|||||+.+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 3556899999999999999999984 2211 123355555667888899999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+...+..+++.+|++++|+|+++..+..... .|..+.. .+.|+++++||+|+...
T Consensus 88 f~~~~~~~l~~aD~~llVvDa~~g~~~~~~~-~~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 88 FTVEVERSLRVLDGAVTVLDAQSGVEPQTET-VWRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCHHHHHHHHHCSEEEEEEETTTBSCHHHHH-HHHHHHH----TTCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHCCEEEEEECCCCCCcHHHHH-HHHHHHH----cCCCEEEEEECCCcccc
Confidence 9888888899999999999999876555443 3444433 47899999999999764
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-19 Score=142.44 Aligned_cols=80 Identities=18% Similarity=0.227 Sum_probs=48.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEE---------------------eCC---EEEEEEEcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELS---------------------MGD---IVFTTHDLGG 74 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~---------------------~~~---~~~~~~d~~g 74 (194)
++|+++|.+|||||||+|++++.... .+..|..++.+... +++ ..+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 47999999999999999999987632 23446666655432 122 5799999999
Q ss_pred Ccc----chhhHh---hhhhcCCEEEEEEECCCC
Q psy2159 75 HVQ----ARRVWR---DYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 75 ~~~----~~~~~~---~~~~~~d~ii~v~d~~~~ 101 (194)
+.+ ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 864 222333 346889999999999875
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=124.03 Aligned_cols=117 Identities=11% Similarity=0.132 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----CCCcceeEEEeCCEEEEEEEcCCCccchhh-------Hhhh--
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----TLHPTSEELSMGDIVFTTHDLGGHVQARRV-------WRDY-- 85 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~-- 85 (194)
.+.++|+++|.+|+|||||+|++++..+..+.+ |.......+..++..+.+|||||+.++... +..+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 467899999999999999999999887643333 233334556678899999999999765421 1111
Q ss_pred hhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCC-CCCCcEEEEeeCCCCCC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESK-YELDNLLADDA-LTDVPILILGNKIDIFD 136 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~-~~~~piiiv~nK~D~~~ 136 (194)
...+|++++|+|++.. ++.... .++..+..... ....|+++|+||+|+.+
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2468999999998664 355443 45554433211 11269999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.8e-18 Score=131.03 Aligned_cols=148 Identities=13% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccc-c--CCCcc-------------e---------------------------
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-P--TLHPT-------------S--------------------------- 57 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~-~--t~~~~-------------~--------------------------- 57 (194)
-.+|+++|++|||||||+|++.+..+.... . |..+. .
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 348999999999999999999997762111 1 10000 0
Q ss_pred ------------eEE--E-eCCEEEEEEEcCCCccc-------------hhhHhhhhhcCCEEEEEEECCCCCChHHHHH
Q psy2159 58 ------------EEL--S-MGDIVFTTHDLGGHVQA-------------RRVWRDYFPAVDAIVFIIDASDRSRFPESKY 109 (194)
Q Consensus 58 ------------~~~--~-~~~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~ 109 (194)
-.+ . .....+.+|||||..+. ......++..+|++++|+|..+.......
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~-- 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSD-- 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCH--
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHH--
Confidence 011 1 12356899999998765 55677788999999999987664433222
Q ss_pred HHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 110 ELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 110 ~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
+ ..++......+.|+++|+||+|+.+. ...+.+..... ....+|+++|++++.++++.+.
T Consensus 192 ~-~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~v~~~s~~~i~~~~~ 253 (360)
T 3t34_A 192 A-IKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSF-----------------KLKYPWVGVVNRSQADINKNVD 253 (360)
T ss_dssp H-HHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSS-----------------CCSSCCEEECCCCHHHHHTTCC
T ss_pred H-HHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccc-----------------cccCCeEEEEECChHHhccCCC
Confidence 1 22222223357899999999998762 22222222111 1225688899988887776544
Q ss_pred H
Q psy2159 188 W 188 (194)
Q Consensus 188 ~ 188 (194)
.
T Consensus 254 ~ 254 (360)
T 3t34_A 254 M 254 (360)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=127.76 Aligned_cols=110 Identities=21% Similarity=0.204 Sum_probs=86.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC------------------CCc-------cccCCCcceeEEEeCCEEEEEEEcCCCcc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR------------------TAQ-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~------------------~~~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~ 77 (194)
+|.|+|+.++|||||..+++... +.. ..-|+......+.+++..++++||||+.+
T Consensus 33 NiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHvD 112 (548)
T 3vqt_A 33 TFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQD 112 (548)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGGG
T ss_pred eEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcHH
Confidence 79999999999999999996321 111 22255556678899999999999999999
Q ss_pred chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 78 ~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
|.......++-+|++|+|+|+...- ..+....|..... .++|.++++||+|....
T Consensus 113 F~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~----~~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 113 FSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRM----RATPVMTFVNKMDREAL 167 (548)
T ss_dssp CSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHH----TTCCEEEEEECTTSCCC
T ss_pred HHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHH----hCCceEEEEecccchhc
Confidence 9998899999999999999998853 3444555666555 58999999999998763
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.9e-17 Score=128.81 Aligned_cols=154 Identities=16% Similarity=0.108 Sum_probs=93.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC------CCC--cccc--CC-----------------Cccee------------
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND------RTA--QHMP--TL-----------------HPTSE------------ 58 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~------~~~--~~~~--t~-----------------~~~~~------------ 58 (194)
..+...|+++|++|+|||||++.+... +.. ...| +. .+...
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 346678889999999999999998632 110 0000 00 00000
Q ss_pred ----------EEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEE
Q psy2159 59 ----------ELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILIL 128 (194)
Q Consensus 59 ----------~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv 128 (194)
.+...+..+.++||||... ........+|++++|+|....+....+. ......|+++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~---------~~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK---------KGVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC---------TTSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH---------HhHhhcCCEEE
Confidence 0122567899999999543 2233457899999999987654442222 11134699999
Q ss_pred eeCCCCCCCCCHHH----HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 129 GNKIDIFDAASEDE----VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 129 ~nK~D~~~~~~~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+||+|+......+. +...+.... .....-..+++++||++|.|+++++++|.+.+
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~----------~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~ 282 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIY----------PREALWRPPVLTMSAVEGRGLAELWDTVERHR 282 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHS----------TTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhcc----------ccccCCCCceEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999864222222 222221110 00001124699999999999999999998754
|
| >3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-17 Score=115.22 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHH---HHHHhCCC-CCCCcEEEEeeCC-CCCCCCCHHHHHhhh
Q psy2159 73 GGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYEL---DNLLADDA-LTDVPILILGNKI-DIFDAASEDEVRHFF 147 (194)
Q Consensus 73 ~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~---~~~~~~~~-~~~~piiiv~nK~-D~~~~~~~~e~~~~~ 147 (194)
+||...+.+|..|+.+.|++|||+|++|.+.++ .+..+ ..++.... ..+.|++|++||. |++.+.+..|+.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 378889999999999999999999999987655 55444 34444432 4789999999995 788899999999999
Q ss_pred cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 148 GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+... . .+.|.++.|||++|+|+.+.++||.+.+
T Consensus 189 ~L~~------------l-~R~W~Iq~csA~TGeGL~EGLdWL~~~l 221 (227)
T 3l82_B 189 HLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 221 (227)
T ss_dssp TGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHTTTT
T ss_pred CCcC------------C-CCCEEEEEeECCCCcCHHHHHHHHHHHH
Confidence 8754 4 3789999999999999999999999876
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=4.1e-16 Score=120.71 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=62.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccch--
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQAR-- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~~-- 79 (194)
++|+++|.||||||||+|++.+..+. .+++|.+++.+.+.+++ ..+.+||+||+.+..
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999987742 34568888888787765 579999999988653
Q ss_pred --hh---HhhhhhcCCEEEEEEECCC
Q psy2159 80 --RV---WRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 80 --~~---~~~~~~~~d~ii~v~d~~~ 100 (194)
.+ +..+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 22 2335789999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-18 Score=130.84 Aligned_cols=135 Identities=10% Similarity=0.037 Sum_probs=102.2
Q ss_pred HHHHHHHcCCCC--ccccCCCcceeEEEe-CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHH
Q psy2159 36 FLLQMLKNDRTA--QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYEL 111 (194)
Q Consensus 36 tli~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~ 111 (194)
+++.++..+.|. .+.||++.... ... .+..+.+||+ +++++.+++.+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777777774 57789986543 333 2237899999 8999999999999999999999999987 677777887
Q ss_pred HHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 112 DNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 112 ~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
..+.. .++|+++|+||+|+.+....++..+..+... .. +.+++|||++|.|++++|+++..
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~~~~--------------~~-~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEEIYS--------------GL-YPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT--------------TT-SCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHHHHh--------------hh-CcEEEEECCCCcCHHHHHHHhcC
Confidence 76643 4789999999999975322233444443321 12 67999999999999999998764
Q ss_pred h
Q psy2159 192 Y 192 (194)
Q Consensus 192 ~ 192 (194)
.
T Consensus 170 e 170 (301)
T 1u0l_A 170 K 170 (301)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-17 Score=124.44 Aligned_cols=151 Identities=12% Similarity=0.122 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC-CCCcc---------ccCCCcceeEE--EeCC--EEEEEEEcCCC-------cc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND-RTAQH---------MPTLHPTSEEL--SMGD--IVFTTHDLGGH-------VQ 77 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~-~~~~~---------~~t~~~~~~~~--~~~~--~~~~~~d~~g~-------~~ 77 (194)
.-.++|+++|++|||||||++++.+. .++.. .+|.......+ ..++ ..+++||++|+ +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 35578999999999999999998875 33321 12222221112 2222 68999999998 44
Q ss_pred chhhHh-------hhhhc-------------CCEEEEEEECCCCCChHHHHH-HHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 78 ARRVWR-------DYFPA-------------VDAIVFIIDASDRSRFPESKY-ELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 78 ~~~~~~-------~~~~~-------------~d~ii~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..... .+++. +++++|+.+++. .+++.... .+..+ . .+.|+++|+||.|+..
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-~----~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-H----NKVNIVPVIAKADTLT 169 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-T----TTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-H----hcCCEEEEEEeCCCCC
Confidence 444433 33322 234555554432 23555442 22222 1 4579999999999865
Q ss_pred CCC----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 137 AAS----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 137 ~~~----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
... .+++.+.++... +.++++||+++ |++++|+++.+.+
T Consensus 170 ~~e~~~~~~~~~~~~~~~~-----------------~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 170 LKERERLKKRILDEIEEHN-----------------IKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----------------CCCCCCC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----------------CeEEecCCccc-cccHHHHHHHHHh
Confidence 211 123333333322 67999999999 9999999887754
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-16 Score=118.42 Aligned_cols=127 Identities=15% Similarity=0.122 Sum_probs=70.8
Q ss_pred EEEEEEEcCCCccchhhH------hhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVW------RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~------~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
..+.+|||||+.+..... ...+.. +++++++|.....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 479999999987654321 123456 8999999986544433332211111110011468999999999987632
Q ss_pred CHHHHHhhhcccCccC-CC-----ccC--------cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SEDEVRHFFGLYGLTT-GK-----EFT--------PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~~e~~~~~~~~~~~~-~~-----~~~--------~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++.+.++...... .. ... ..... ....+++++||++|+|+++++++|.+.+
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEV-LPPVRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-SCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHh-cCcccceEEEecCcccHHHHHHHHHHHh
Confidence 2223333221100000 00 000 00001 1224689999999999999999998764
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.2e-16 Score=126.36 Aligned_cols=114 Identities=21% Similarity=0.213 Sum_probs=79.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC--c--cccCCCcceeE------------------------------------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA--Q--HMPTLHPTSEE------------------------------------ 59 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~--~--~~~t~~~~~~~------------------------------------ 59 (194)
...+|+++|.+|+|||||+|++.+.++. . ..|+.......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4579999999999999999999998763 1 11211110000
Q ss_pred --EEeCC---EEEEEEEcCCCcc-----------chhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC
Q psy2159 60 --LSMGD---IVFTTHDLGGHVQ-----------ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV 123 (194)
Q Consensus 60 --~~~~~---~~~~~~d~~g~~~-----------~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (194)
+..++ ..+.+|||||... +......++..+|++++|+|+++.........++..+.. .+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~ 219 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HED 219 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCC
Confidence 00010 2589999999875 345566678899999999999886556666666555422 468
Q ss_pred cEEEEeeCCCCCCC
Q psy2159 124 PILILGNKIDIFDA 137 (194)
Q Consensus 124 piiiv~nK~D~~~~ 137 (194)
|+++|+||+|+...
T Consensus 220 pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 220 KIRVVLNKADMVET 233 (550)
T ss_dssp GEEEEEECGGGSCH
T ss_pred CEEEEEECCCccCH
Confidence 99999999998763
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.7e-16 Score=114.38 Aligned_cols=147 Identities=14% Similarity=0.150 Sum_probs=93.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc-------cccCC----------CcceeEE------------------EeCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-------HMPTL----------HPTSEEL------------------SMGD 64 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~-------~~~t~----------~~~~~~~------------------~~~~ 64 (194)
+..+++++|++|||||||++++....... ..+.. +.....+ ...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45688899999999999999998652110 00000 0000111 1133
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDE 142 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e 142 (194)
..+.+|||+|+..... .+....+.+++|+|+..... .... +... .+.|.++++||+|+.+. ...++
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~-~~~~------~~~~~iiv~NK~Dl~~~~~~~~~~ 176 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEK-HPEI------FRVADLIVINKVALAEAVGADVEK 176 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHH-CHHH------HHTCSEEEEECGGGHHHHTCCHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhh-hhhh------hhcCCEEEEecccCCcchhhHHHH
Confidence 5788999999521111 11125688999999877532 1111 1111 24689999999998642 45666
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+.+.+... ...++++++||++|.|+++++++|.+.+
T Consensus 177 ~~~~~~~~---------------~~~~~i~~~Sa~~g~gi~~l~~~l~~~~ 212 (221)
T 2wsm_A 177 MKADAKLI---------------NPRAKIIEMDLKTGKGFEEWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHH---------------CTTSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHh---------------CCCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 66665431 1236899999999999999999998754
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-15 Score=123.44 Aligned_cols=170 Identities=15% Similarity=0.116 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhCC--cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCc------------------------
Q psy2159 5 WTKFREVLLRLGL--WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHP------------------------ 55 (194)
Q Consensus 5 ~~~~~~~~~~~~~--~~~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~------------------------ 55 (194)
...+++.+..++. .....+|+|+|.+++||||++|++.+..+.. -..|..+
T Consensus 33 inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~ 112 (772)
T 3zvr_A 33 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFT 112 (772)
T ss_dssp HHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBC
T ss_pred HHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccC
Confidence 3345566666764 3577899999999999999999999977621 1111110
Q ss_pred -----------------------c----eeEEEeC-CEEEEEEEcCCCcc-------------chhhHhhhh-hcCCEEE
Q psy2159 56 -----------------------T----SEELSMG-DIVFTTHDLGGHVQ-------------ARRVWRDYF-PAVDAIV 93 (194)
Q Consensus 56 -----------------------~----~~~~~~~-~~~~~~~d~~g~~~-------------~~~~~~~~~-~~~d~ii 93 (194)
. .-.+..+ ...+.++||||... .......++ ..+|+++
T Consensus 113 ~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL 192 (772)
T 3zvr_A 113 DFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLIL 192 (772)
T ss_dssp CHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEE
T ss_pred CHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEE
Confidence 0 0011122 24588999999544 122333344 4689999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++....-......+..+ .. .+.|+++|+||+|+.+... ...+.. -+... ......+++
T Consensus 193 ~VVDAs~~~~~~d~l~ll~~L-~~---~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~------------l~lg~~~VV 255 (772)
T 3zvr_A 193 AVSPANSDLANSDALKIAKEV-DP---QGQRTIGVITKLDLMDEGTDARDVLE-NKLLP------------LRRGYIGVV 255 (772)
T ss_dssp EEEETTSCSSSCHHHHHHHHH-CT---TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSC------------CSSCEEECC
T ss_pred EEEcCCCCcchhHHHHHHHHH-Hh---cCCCEEEEEeCcccCCcchhhHHHHH-HHhhh------------hhccCCceE
Confidence 999998754333332333333 22 5789999999999876322 122221 11111 122346789
Q ss_pred EeccccCCChHHHHHHHhh
Q psy2159 173 MCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~ 191 (194)
++||++|.|++++++++.+
T Consensus 256 ~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 256 NRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CCCCEESSSSEEHHHHHHH
T ss_pred EecccccccchhHHHHHHH
Confidence 9999999999999999875
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-15 Score=118.80 Aligned_cols=109 Identities=13% Similarity=0.075 Sum_probs=63.0
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS--- 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--- 139 (194)
++..+.++||+|.... .......+|++++|+|++.......... .+ ...|.++++||+|+.+...
T Consensus 165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~~~ 232 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPARR 232 (349)
T ss_dssp TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHHHH
T ss_pred CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhHHH
Confidence 5678899999996422 2334678999999999876432221111 11 2458899999999854211
Q ss_pred -HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 -EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 -~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++...+.... .. ......+++++||++|.|+++++++|.+.+
T Consensus 233 ~~~~l~~~l~~~~---------~~-a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 233 IQAEYVSALKLLR---------KR-SQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHHHTTCC---------------CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC---------cc-ccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 112222221110 00 000124689999999999999999998753
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.3e-15 Score=115.60 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=60.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC---------------------CEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG---------------------DIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~---------------------~~~~~~~d~~g~~~ 77 (194)
++++++|.||||||||+|++.+.... ....|..++.+....+ +..+.+||+||+.+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 57899999999999999999986421 3445777877766543 35799999999876
Q ss_pred ch-------hhHhhhhhcCCEEEEEEECCC
Q psy2159 78 AR-------RVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 78 ~~-------~~~~~~~~~~d~ii~v~d~~~ 100 (194)
.. ..+...++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 42 223445789999999999976
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=123.00 Aligned_cols=108 Identities=16% Similarity=0.134 Sum_probs=65.4
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH-
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED- 141 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~- 141 (194)
++..+.++||||....... ....+|++++|+|.+.......... .. .+.|.++|+||+|+.......
T Consensus 147 ~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~ 214 (341)
T 2p67_A 147 AGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAI 214 (341)
T ss_dssp TTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHH
T ss_pred cCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHH
Confidence 4678999999997654332 3578999999999875432211111 11 145889999999986531222
Q ss_pred ---HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 142 ---EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 142 ---e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
++...+.... .....-..+++++||++|.|+++++++|.+.
T Consensus 215 ~~~~l~~~l~~~~----------~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~ 258 (341)
T 2p67_A 215 ARHMYESALHILR----------RKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 258 (341)
T ss_dssp HHHHHHHHHHHSC----------CSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc----------ccccCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence 2222221111 0000012478999999999999999999774
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.1e-16 Score=123.18 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcc---------ccCCCccee--EEEeCC--EEEEEEEcCCCccch-------
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQH---------MPTLHPTSE--ELSMGD--IVFTTHDLGGHVQAR------- 79 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~---------~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~------- 79 (194)
-.++|+++|++|||||||++++++..++.. .+|.+.... .+...+ ..+++||++|.....
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~ 109 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 109 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence 346789999999999999999998766311 112111111 111123 478999999986531
Q ss_pred hh------------------HhhhhhcCCE--EEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCC
Q psy2159 80 RV------------------WRDYFPAVDA--IVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAA 138 (194)
Q Consensus 80 ~~------------------~~~~~~~~d~--ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 138 (194)
.+ ...++.++++ ++|+.+.+ ..++.... .++..+ . .+.|+|+|+||+|+....
T Consensus 110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt-~~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~~ 183 (418)
T 2qag_C 110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS-GHGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTPE 183 (418)
T ss_dssp HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC--CCSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc-ccCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccHH
Confidence 11 0123344444 44443332 13455554 445444 2 368999999999986521
Q ss_pred CH----HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 139 SE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 139 ~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. +++.+.+... .++++++||+++.+++++|..+.+.+
T Consensus 184 ev~~~k~~i~~~~~~~-----------------~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 184 ECQQFKKQIMKEIQEH-----------------KIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHHHHHHH-----------------TCCCCCCC-----------------C
T ss_pred HHHHHHHHHHHHHHHc-----------------CCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 11 2222333222 26789999999999999988887654
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8e-16 Score=131.25 Aligned_cols=122 Identities=15% Similarity=0.156 Sum_probs=89.4
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCC------------CC-------ccccCCCcceeEEEeC---
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR------------TA-------QHMPTLHPTSEELSMG--- 63 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~------------~~-------~~~~t~~~~~~~~~~~--- 63 (194)
.+++..+. ...+..+|+++|++++|||||++++.... +. ....|+......+.+.
T Consensus 7 ~~~~~~m~---~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~ 83 (842)
T 1n0u_A 7 DQMRSLMD---KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSD 83 (842)
T ss_dssp HHHHHHHH---CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCH
T ss_pred HHHHHHhh---CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccc
Confidence 34444443 23455699999999999999999998641 11 1122444444444443
Q ss_pred -------------CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEee
Q psy2159 64 -------------DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130 (194)
Q Consensus 64 -------------~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~n 130 (194)
+..+++|||||+.++...+..+++.+|++++|+|+++..++.....| ..... .+.|+++++|
T Consensus 84 ~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviN 158 (842)
T 1n0u_A 84 EDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVIN 158 (842)
T ss_dssp HHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEE
T ss_pred cccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEE
Confidence 57899999999999999999999999999999999998777665443 33333 4789999999
Q ss_pred CCCCC
Q psy2159 131 KIDIF 135 (194)
Q Consensus 131 K~D~~ 135 (194)
|+|+.
T Consensus 159 K~D~~ 163 (842)
T 1n0u_A 159 KVDRA 163 (842)
T ss_dssp CHHHH
T ss_pred CCCcc
Confidence 99986
|
| >3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.8e-16 Score=113.87 Aligned_cols=108 Identities=17% Similarity=0.198 Sum_probs=86.9
Q ss_pred cCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHH---HHHhCCC-CCCCcEEEEeeC-CCCCCCCCHHHHHhh
Q psy2159 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELD---NLLADDA-LTDVPILILGNK-IDIFDAASEDEVRHF 146 (194)
Q Consensus 72 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~---~~~~~~~-~~~~piiiv~nK-~D~~~~~~~~e~~~~ 146 (194)
.+||...+..|..|+.+.|++|||+|++|.+.++ ....+. .++.... ..+.|++|.+|| .|++.+.+..|+.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578889999999999999999999999988765 443333 3343221 368999999996 699889999999999
Q ss_pred hcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 147 FGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++... . .+.|.++.|||.+|+|+.|.++||.+.+
T Consensus 273 L~L~~------------l-~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 273 LHLNL------------L-NHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp TTGGG------------G-CSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred cCCcc------------C-CCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 98754 4 3689999999999999999999999876
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.9e-16 Score=127.29 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=113.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC--CC------------c-------cccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR--TA------------Q-------HMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~--~~------------~-------~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
||.++|+.++|||||..+++... .. . ..-|+......+.+++..++++|||||.+|...
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 78999999999999999986321 11 0 111444445567778899999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~ 158 (194)
....++-+|++++|+|+...- ..+....|..... .++|.++++||+|...... .+++.+.+...........
T Consensus 84 v~raL~~~DgavlVVDa~~GV-~~qT~~v~~~a~~----~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~~~ 158 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGV-QAQTRILFHALRK----MGIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQKVE 158 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTT-CSHHHHHHHHHHH----HTCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred HHHHHHHhCEEEEEEeCCCCC-cHHHHHHHHHHHH----cCCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccceeE
Confidence 899999999999999998743 3344555555554 4789999999999876332 2334443322110000000
Q ss_pred --------Cc------------------------------------ccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 --------TP------------------------------------REILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 --------~~------------------------------------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.. .........+++..||+++.||+.+++.+.+.+
T Consensus 159 ~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~~ 237 (638)
T 3j25_A 159 LYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNKF 237 (638)
T ss_dssp SCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred eeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhccc
Confidence 00 000112235788899999999999999998765
|
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9e-15 Score=113.83 Aligned_cols=110 Identities=18% Similarity=0.192 Sum_probs=81.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCccch-------hhHhhhhhcCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR-------RVWRDYFPAVDAI 92 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~i 92 (194)
+|+++|.|+||||||+|++++.+.. .++.|..+..+.+.+++..+.++|+||..+.. ......++.+|++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~i 153 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLL 153 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCcc
Confidence 7999999999999999999987643 57779999999999999999999999965321 1233456789999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCC
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDI 134 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~ 134 (194)
++|+|.+++. ........++... .....+|.++++||.|.
T Consensus 154 l~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 154 FIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEK 194 (376)
T ss_dssp EEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred ccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhh
Confidence 9999998742 2222222222221 12245788889999985
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=115.71 Aligned_cols=109 Identities=17% Similarity=0.092 Sum_probs=79.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC--------CC---cc----------ccCCCcceeEEEe-------CCEEEEEEEcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR--------TA---QH----------MPTLHPTSEELSM-------GDIVFTTHDLGG 74 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~--------~~---~~----------~~t~~~~~~~~~~-------~~~~~~~~d~~g 74 (194)
+|.|+|+.++|||||..+|.... .. .+ .-|+......+.+ +++.++++||||
T Consensus 15 Ni~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPG 94 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPG 94 (709)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCCS
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCC
Confidence 78999999999999999987321 10 01 1123333334444 258999999999
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
|.+|.......++-+|++++|+|+...- -.+....|..... .++|.++++||+|...
T Consensus 95 HvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~----~~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 95 HVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANK----YGVPRIVYVNKMDRQG 151 (709)
T ss_dssp CTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHH----HTCCEEEEEECSSSTT
T ss_pred CcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHH----cCCCeEEEEccccccC
Confidence 9999998899999999999999998753 3444555666655 4799999999999865
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=105.82 Aligned_cols=148 Identities=17% Similarity=0.235 Sum_probs=83.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc-cccCCCcce--------------eEEEeC-C------------------
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ-HMPTLHPTS--------------EELSMG-D------------------ 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~-~~~t~~~~~--------------~~~~~~-~------------------ 64 (194)
.+..+|+++|.+|||||||++++....+.. ..++++.+. ..+..+ +
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 115 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN 115 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence 356789999999999999999999764331 222222111 111111 0
Q ss_pred ---EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CC
Q psy2159 65 ---IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--AS 139 (194)
Q Consensus 65 ---~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~ 139 (194)
..+.+.|++|.-.... .+-...+..+.++|.......... .... ...|.++++||+|+.+. ..
T Consensus 116 ~~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~---~~~~------~~~~~iiv~NK~Dl~~~~~~~ 183 (226)
T 2hf9_A 116 LDEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK---HPGI------MKTADLIVINKIDLADAVGAD 183 (226)
T ss_dssp GGGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT---CHHH------HTTCSEEEEECGGGHHHHTCC
T ss_pred cCCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh---hhhH------hhcCCEEEEeccccCchhHHH
Confidence 1344444444211110 011123445566664322111110 0111 13678999999998652 45
Q ss_pred HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 140 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+++.+.+.... ...+++++||++|.|++++|+++.+.+
T Consensus 184 ~~~~~~~~~~~~---------------~~~~~~~~Sa~~g~gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 184 IKKMENDAKRIN---------------PDAEVVLLSLKTMEGFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHHHC---------------TTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---------------CCCeEEEEEecCCCCHHHHHHHHHHHH
Confidence 566666554321 236799999999999999999998754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.9e-14 Score=107.63 Aligned_cols=161 Identities=12% Similarity=0.061 Sum_probs=91.3
Q ss_pred HHHHHhCCcCCC-CeEEEEcCCCCChHHHHHHHHc------CCCC----ccccCC------------C-----cceeE--
Q psy2159 10 EVLLRLGLWKKS-GKLLFLGLDNAGKTFLLQMLKN------DRTA----QHMPTL------------H-----PTSEE-- 59 (194)
Q Consensus 10 ~~~~~~~~~~~~-~~i~v~G~~~~GKStli~~~~~------~~~~----~~~~t~------------~-----~~~~~-- 59 (194)
..+..++..... ..+.++|++|||||||++.+.+ .+.. ....+. + +....
T Consensus 43 ~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 122 (337)
T 2qm8_A 43 DLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRP 122 (337)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEEC
T ss_pred HHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccccc
Confidence 466777765544 4566889999999999999983 2221 010000 0 00000
Q ss_pred --------------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC
Q psy2159 60 --------------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119 (194)
Q Consensus 60 --------------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 119 (194)
+...+..+.++||||...... .....+|.+++++|..............
T Consensus 123 ~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i-------- 191 (337)
T 2qm8_A 123 SPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI-------- 191 (337)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH--------
T ss_pred CcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH--------
Confidence 123578899999999764322 2346899999999976432211111111
Q ss_pred CCCCcEEEEeeCCCCCCCCC-----HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 120 LTDVPILILGNKIDIFDAAS-----EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 120 ~~~~piiiv~nK~D~~~~~~-----~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...|.++++||+|+.+... .+++...+.... .....-..+++.+||+++.|++++++.|.+.
T Consensus 192 -~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~----------~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 192 -FELADMIAVNKADDGDGERRASAAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp -HHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred -hccccEEEEEchhccCchhHHHHHHHHHHHHHHhcc----------ccccCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 1235688889999754211 112222111110 0000002467889999999999999998764
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.9e-11 Score=95.74 Aligned_cols=86 Identities=22% Similarity=0.312 Sum_probs=67.1
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCC----CccccCCCcceeEEEeCC-----------------EEEEEEEcC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRT----AQHMPTLHPTSEELSMGD-----------------IVFTTHDLG 73 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~----~~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~ 73 (194)
++...+..+++++|++|||||||+|++++... ..++.|..++.+.+..++ ..+.+||+|
T Consensus 14 lg~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~p 93 (392)
T 1ni3_A 14 WGRPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIA 93 (392)
T ss_dssp CSSSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTG
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecc
Confidence 44445678999999999999999999999654 235558888988888875 468999999
Q ss_pred CCcc-------chhhHhhhhhcCCEEEEEEECCC
Q psy2159 74 GHVQ-------ARRVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 74 g~~~-------~~~~~~~~~~~~d~ii~v~d~~~ 100 (194)
|... ....+...++.+|++++|+|+.+
T Consensus 94 Gl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 94 GLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp GGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9543 22344556788999999999864
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=102.71 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=58.1
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGG 74 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g 74 (194)
++......+++++|.+|+|||||+|++.+..+. .++.|.+++.+.+..++ ..+.+||+||
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpG 95 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAG 95 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCC
Confidence 445567789999999999999999999987652 35667888888877654 2599999999
Q ss_pred Cccchh-------hHhhhhhcCCEEEEEEECCCCCC
Q psy2159 75 HVQARR-------VWRDYFPAVDAIVFIIDASDRSR 103 (194)
Q Consensus 75 ~~~~~~-------~~~~~~~~~d~ii~v~d~~~~~~ 103 (194)
+.+... .+..+++.+|++++|+|+++..+
T Consensus 96 l~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~ 131 (396)
T 2ohf_A 96 LVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD 131 (396)
T ss_dssp -----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred cccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence 886443 45667899999999999976443
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-12 Score=99.77 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred CccchhhHhhhhhcCCEEEEEEECCCCC-ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhccc
Q psy2159 75 HVQARRVWRDYFPAVDAIVFIIDASDRS-RFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLY 150 (194)
Q Consensus 75 ~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~ 150 (194)
++++..+.+.++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... .+++.+.++..
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~ 141 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDA 141 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHC
Confidence 6667777778899999999999999886 78877777775543 5799999999999975321 23333434332
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
. .+++++||++|.|++++++.+...
T Consensus 142 g-----------------~~~~~~SA~~g~gi~~L~~~l~G~ 166 (302)
T 2yv5_A 142 G-----------------YDVLKVSAKTGEGIDELVDYLEGF 166 (302)
T ss_dssp T-----------------CEEEECCTTTCTTHHHHHHHTTTC
T ss_pred C-----------------CeEEEEECCCCCCHHHHHhhccCc
Confidence 2 679999999999999999987643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.4e-09 Score=85.50 Aligned_cols=162 Identities=15% Similarity=0.075 Sum_probs=87.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHH------cCCCCcccc-CC---------------CcceeE-----------------EE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLK------NDRTAQHMP-TL---------------HPTSEE-----------------LS 61 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~------~~~~~~~~~-t~---------------~~~~~~-----------------~~ 61 (194)
...|+++|++||||||+++.|. +.+..-... +. +..... ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~~ 180 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFK 180 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHHH
Confidence 4467788999999999999998 443210000 00 011000 01
Q ss_pred eCCEEEEEEEcCCCccchh-hH---hhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCC
Q psy2159 62 MGDIVFTTHDLGGHVQARR-VW---RDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDI 134 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~-~~---~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 134 (194)
..+..+.++||||...... .+ ... +..+|.+++|+|+..... .......+.. ..|+ .+|+||.|.
T Consensus 181 ~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~-----~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 181 NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD-----KVDVASVIVTKLDG 252 (504)
T ss_dssp HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH-----HHCCCCEEEECTTS
T ss_pred HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh-----hcCceEEEEeCCcc
Confidence 1567899999999764221 11 111 226899999999987532 2222222221 2575 899999998
Q ss_pred CCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 135 FDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
...... -.+...++..-.-...++.. . .-....+.+.+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g~~l~~~~~~g~PI~fig~ge~~-~-dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGGGALSAVAATKSPIIFIGTGEHI-D-DFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCTHHHHHHHHHCCCEEEEECSSST-T-CEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchHHHHHHHHHhCCCeEEeccccch-h-hhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 653221 12222222100000000000 0 001122345689999999 99999998754
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-09 Score=85.52 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=88.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCcccc-CC-Ccc----eeEEEeCC-EEEEEEEcCCCccch----hhHhh-hhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-TL-HPT----SEELSMGD-IVFTTHDLGGHVQAR----RVWRD-YFP 87 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-t~-~~~----~~~~~~~~-~~~~~~d~~g~~~~~----~~~~~-~~~ 87 (194)
....++++|++|||||||+|.+.+...+.... +. +.. ........ ..+.++|++|..... ..... .+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 44578899999999999999999853321110 00 100 11112121 257899999864221 11111 123
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC---------CCCCHHHHHhhhcccCccCCCcc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF---------DAASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~---------~~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
..+..++ ++... +...+..+...+.. .++|+++|.||.|+. +....+++.+.+.......
T Consensus 148 ~~~~~~~-lS~G~---~~kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~---- 216 (413)
T 1tq4_A 148 EYDFFII-ISATR---FKKNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT---- 216 (413)
T ss_dssp GCSEEEE-EESSC---CCHHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH----
T ss_pred ccCCeEE-eCCCC---ccHHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH----
Confidence 3455554 66653 22333333333333 368999999999963 2234445544443321000
Q ss_pred CcccccCCcceEEEEecc--ccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSV--LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa--~~~~~v~~l~~~l~~~i 193 (194)
....+.....++.+|+ .++.|++++.+.+.+.+
T Consensus 217 --l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L 251 (413)
T 1tq4_A 217 --FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 251 (413)
T ss_dssp --HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred --HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence 0001112235788999 66677999999998765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.99 E-value=7.4e-10 Score=83.34 Aligned_cols=100 Identities=21% Similarity=0.271 Sum_probs=67.2
Q ss_pred EEEcCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhh
Q psy2159 69 THDLGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFF 147 (194)
Q Consensus 69 ~~d~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~ 147 (194)
+-..||+. ...+.....+..+|+++.|+|+.++.+.... .+..++ .++|.++|+||+|+.+....+.+.+++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 34578876 4555666678899999999999998776531 233332 478999999999997632222333444
Q ss_pred cccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 148 GLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+... .+++.+||+++.|++++++.+.+.
T Consensus 76 ~~~g-----------------~~~i~iSA~~~~gi~~L~~~i~~~ 103 (282)
T 1puj_A 76 ENQG-----------------IRSLSINSVNGQGLNQIVPASKEI 103 (282)
T ss_dssp HTTT-----------------CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred HhcC-----------------CcEEEEECCCcccHHHHHHHHHHH
Confidence 3222 578999999999999999987664
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.3e-11 Score=92.11 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=67.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-----CCCccccCCCcceeE--EEeCCEEEEEEEcCCCccchh--------hHhh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-----RTAQHMPTLHPTSEE--LSMGDIVFTTHDLGGHVQARR--------VWRD 84 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-----~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~~~~~--------~~~~ 84 (194)
...+++++|.+|+|||||+|++.+. ......+..+.+... +..+ ..+.++||||...... ....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3468999999999999999999986 333333333333322 2333 2479999999653221 1222
Q ss_pred hh--hcCCEEEEEEECCCC---CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 85 YF--PAVDAIVFIIDASDR---SRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 85 ~~--~~~d~ii~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
++ +..+.++++++.... ..+.. +..-...+.|+++++||+|...
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l~~--------l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGLAR--------LDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTTEE--------EEEEESSSEEEEEEECTTSCEE
T ss_pred HhcccccCceEEEEcCCceEEECCEEE--------EEEccCCCceEEEEecCCcccc
Confidence 22 568999999988431 11111 1111124689999999999866
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-09 Score=84.57 Aligned_cols=101 Identities=22% Similarity=0.282 Sum_probs=69.0
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGL 152 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~ 152 (194)
..+++.+.+..+.+.++++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+ ....+++.+++....
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~- 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSA- 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHHHH-
Confidence 45678888888888999999999998732 2332233222 14789999999999966 334455555532211
Q ss_pred cCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+.+...++.+||++|.|++++++.+.+
T Consensus 127 ---------~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~ 156 (368)
T 3h2y_A 127 ---------KQLGLKPEDVFLISAAKGQGIAELADAIEY 156 (368)
T ss_dssp ---------HHTTCCCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred ---------HHcCCCcccEEEEeCCCCcCHHHHHhhhhh
Confidence 001222237899999999999999999865
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.88 E-value=3.2e-10 Score=88.43 Aligned_cols=124 Identities=8% Similarity=0.093 Sum_probs=70.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC------CCccccCCCccee--EEEeCCEEEEEEEcCCCccchh--------hHh
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR------TAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQARR--------VWR 83 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~------~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~~~~--------~~~ 83 (194)
+..+++++|.+|+|||||+|++.+.. .....+..+.+.. .+..+. .+.++||||...... ...
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~-~~~liDtPG~~~~~~~~~~l~~~~l~ 237 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLK 237 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC-CeEEEeCCCcCcHHHHHHHhhHHHHH
Confidence 34689999999999999999999852 2223333333322 223222 388999999653221 111
Q ss_pred hh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcc
Q psy2159 84 DY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGL 149 (194)
Q Consensus 84 ~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~ 149 (194)
.+ .+..+.++++++.....-...+. + .+.+. ..+.|+++++||+|.......+...+.+++
T Consensus 238 ~~~~~~~i~~~~~~l~~~~~~~~g~l~-~-~d~l~---~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~ 300 (368)
T 3h2y_A 238 LITPTKEIKPMVFQLNEEQTLFFSGLA-R-FDYVS---GGRRAFTCHFSNRLTIHRTKLEKADELYKN 300 (368)
T ss_dssp HHSCSSCCCCEEEEECTTEEEEETTTE-E-EEEEE---SSSEEEEEEECTTSCEEEEEHHHHHHHHHH
T ss_pred HhccccccCceEEEEcCCCEEEEcceE-E-EEEec---CCCceEEEEecCccccccccHHHHHHHHHH
Confidence 11 25678899999874311011100 0 01111 246899999999998764445554444433
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-09 Score=83.00 Aligned_cols=102 Identities=20% Similarity=0.253 Sum_probs=69.5
Q ss_pred CCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCc
Q psy2159 74 GHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGL 152 (194)
Q Consensus 74 g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~ 152 (194)
.++++++....+++.++++++|+|++++.+ .....+..++ .++|+++|+||+|+.+. ...+++.+++....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~- 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRRMA- 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHHHH-
Confidence 477888888888899999999999998652 1111122221 47899999999999763 34455555543211
Q ss_pred cCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.+...++.+||++|.|++++++.+.+.
T Consensus 129 ---------~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~ 159 (369)
T 3ec1_A 129 ---------EELGLCPVDVCLVSAAKGIGMAKVMEAINRY 159 (369)
T ss_dssp ---------HTTTCCCSEEEECBTTTTBTHHHHHHHHHHH
T ss_pred ---------HHcCCCcccEEEEECCCCCCHHHHHHHHHhh
Confidence 0022222478999999999999999998653
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-09 Score=83.09 Aligned_cols=119 Identities=14% Similarity=0.110 Sum_probs=61.8
Q ss_pred HHHhCCcCCCCe---EEEEcCCCCChHHHHHHHHcCCCCc-ccc--CCCcce---eEE-EeCC--EEEEEEEcCCCccc-
Q psy2159 12 LLRLGLWKKSGK---LLFLGLDNAGKTFLLQMLKNDRTAQ-HMP--TLHPTS---EEL-SMGD--IVFTTHDLGGHVQA- 78 (194)
Q Consensus 12 ~~~~~~~~~~~~---i~v~G~~~~GKStli~~~~~~~~~~-~~~--t~~~~~---~~~-~~~~--~~~~~~d~~g~~~~- 78 (194)
++.+++..+... ++++|++|||||||+|.+++..+.. ... +.+... ..+ ...+ ..++++|++|....
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 444444444433 7899999999999999999875431 111 111111 111 1122 37899999986432
Q ss_pred -------------hhhHhh----h---------hhc--CCE-EEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEe
Q psy2159 79 -------------RRVWRD----Y---------FPA--VDA-IVFIIDASDRSRFPESKYELDNLLADDALTDVPILILG 129 (194)
Q Consensus 79 -------------~~~~~~----~---------~~~--~d~-ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~ 129 (194)
...+.. + ..+ +|+ +.++.|..+. .......+...+. .+.|+|+|.
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~--l~~~Dieilk~L~----~~~~vI~Vi 183 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS--LKSLDLVTMKKLD----SKVNIIPII 183 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-----CHHHHHHHHHTC----SCSEEEEEE
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC--CCHHHHHHHHHHh----hCCCEEEEE
Confidence 111111 1 011 233 4455565543 3333322333322 578999999
Q ss_pred eCCCCCC
Q psy2159 130 NKIDIFD 136 (194)
Q Consensus 130 nK~D~~~ 136 (194)
||+|...
T Consensus 184 ~KtD~Lt 190 (427)
T 2qag_B 184 AKADAIS 190 (427)
T ss_dssp SCGGGSC
T ss_pred cchhccc
Confidence 9999865
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.7e-09 Score=78.00 Aligned_cols=109 Identities=16% Similarity=0.223 Sum_probs=60.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccc----------cCCCc-ceeEE-EeCC--EEEEEEEcCCCccch--------
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHM----------PTLHP-TSEEL-SMGD--IVFTTHDLGGHVQAR-------- 79 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~----------~t~~~-~~~~~-~~~~--~~~~~~d~~g~~~~~-------- 79 (194)
++++++|++|||||||+|.+++...+... .+... ....+ ...+ ..++++|++|.....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 68899999999999999999985433111 01100 11111 1112 368999999853210
Q ss_pred --hh----Hhh--------------hhhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 80 --RV----WRD--------------YFPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 80 --~~----~~~--------------~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.. +.. .+..+++.++++|.... .+.... ..+..+ .. . .++++++||.|...
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~-gL~~lD~~~l~~L-~~---~-~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGH-SLRPLDLEFMKHL-SK---V-VNIIPVIAKADTMT 154 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSS-SCCHHHHHHHHHH-HT---T-SEEEEEETTGGGSC
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCC-cCCHHHHHHHHHH-Hh---c-CcEEEEEeccccCC
Confidence 00 000 11235788888886532 233333 333333 32 2 89999999999865
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.9e-09 Score=77.59 Aligned_cols=94 Identities=21% Similarity=0.216 Sum_probs=61.7
Q ss_pred cCCCc-cchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhccc
Q psy2159 72 LGGHV-QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLY 150 (194)
Q Consensus 72 ~~g~~-~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~ 150 (194)
.|||. ...+.....+..+|+++.|+|+.++.+..... +. + . ++|.++|+||+|+.+....+++.+.++..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~ 74 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKTTKKWVEFFKKQ 74 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHHHHHHHHHHHHc
Confidence 46765 33445566788999999999999877654321 11 1 1 78999999999997632223334444322
Q ss_pred CccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 151 GLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+ .++ .+||+++.|++++++.+.+.
T Consensus 75 g-----------------~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 75 G-----------------KRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp T-----------------CCE-EECCTTSCHHHHHHHHCCCT
T ss_pred C-----------------CeE-EEECCCCcCHHHHHHHHHHh
Confidence 2 446 89999999999999987654
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.9e-08 Score=73.93 Aligned_cols=59 Identities=20% Similarity=0.233 Sum_probs=38.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce--eEEEeCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS--EELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~d~~g~~~ 77 (194)
....++++++|.||+|||||+|++.+.....+.++.+.+. ..+..+ ..+.++||||...
T Consensus 117 ~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtpG~~~ 177 (282)
T 1puj_A 117 KPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVG-KELELLDTPGILW 177 (282)
T ss_dssp CCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEET-TTEEEEECCCCCC
T ss_pred CCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeC-CCEEEEECcCcCC
Confidence 4567899999999999999999999887554444333332 123333 3689999999753
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=8.7e-09 Score=76.69 Aligned_cols=55 Identities=22% Similarity=0.282 Sum_probs=36.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee--EEEeCCEEEEEEEcCCCcc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE--ELSMGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~d~~g~~~ 77 (194)
.+++++|.+|+|||||+|++.+.....+.++.+.+.. .+.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 6999999999999999999998877655555444322 2233 34789999999764
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.58 E-value=5.5e-08 Score=77.28 Aligned_cols=162 Identities=15% Similarity=0.047 Sum_probs=83.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC------CCC----c-c-------------------c----cCCCcc-e--eEE-Ee
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND------RTA----Q-H-------------------M----PTLHPT-S--EEL-SM 62 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~------~~~----~-~-------------------~----~t~~~~-~--~~~-~~ 62 (194)
+..|+++|++|+||||+++.+... +.. . . . .+.++. . ..+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 346889999999999999988863 110 0 0 0 111110 0 000 01
Q ss_pred CCEEEEEEEcCCCccchhh-Hh---h--hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCC-c-EEEEeeCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRV-WR---D--YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDV-P-ILILGNKIDI 134 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~-~~---~--~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~-p-iiiv~nK~D~ 134 (194)
.+..+.++||||....... .. . .+..+|.+++|+|+.... ........+ . ... | ..+|+||.|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 4568899999997643221 11 1 122589999999986632 222223222 1 234 5 7899999997
Q ss_pred CCCCC-HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC-hHHHHHHHhhh
Q psy2159 135 FDAAS-EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG-FGNGFRWLANY 192 (194)
Q Consensus 135 ~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~-v~~l~~~l~~~ 192 (194)
..... ...+....+..-.-...+... ..-..+.+...+|+..|.| +..+++.+.+.
T Consensus 251 ~~~~g~~l~~~~~~~~pi~~ig~Ge~~--~dl~~f~~~~~~s~l~g~gdi~~L~e~~~~~ 308 (432)
T 2v3c_C 251 SAKGGGALSAVAETKAPIKFIGIGEGI--DDLEPFDPKKFISRLLGMGDLESLLEKAEDM 308 (432)
T ss_dssp CSTTHHHHHHHHHSSCCEEEECCSSSS--SSCCBCCHHHHHHHHTCSSCSSTTSSTTTSC
T ss_pred ccchHHHHHHHHHHCCCEEEeecCccc--cccccCCHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 54211 111222221100000000000 0011223345678888888 88877776554
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.51 E-value=4.3e-08 Score=74.39 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=61.1
Q ss_pred hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHhhhcccCccCCC
Q psy2159 81 VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRHFFGLYGLTTGK 156 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~~~~~~~~~~~~ 156 (194)
+.+..+.++|.+++|+|+.++..-......+...... .++|.++|+||+|+.++.. .+++.+.++..+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g----- 150 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG----- 150 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-----
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-----
Confidence 3445688999999999999776444433333322233 5789999999999977532 234444443323
Q ss_pred ccCcccccCCcceEEEEeccccCCChHHHHHHH
Q psy2159 157 EFTPREILQMRPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
.+++.+||.++.|++++++..
T Consensus 151 ------------~~v~~~sa~~~~g~~~L~~~~ 171 (307)
T 1t9h_A 151 ------------YDVYLTSSKDQDSLADIIPHF 171 (307)
T ss_dssp ------------CCEEECCHHHHTTCTTTGGGG
T ss_pred ------------CeEEEEecCCCCCHHHHHhhc
Confidence 578999999999998877654
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-06 Score=68.03 Aligned_cols=66 Identities=11% Similarity=0.091 Sum_probs=40.3
Q ss_pred CEEEEEEEcCCCccchh-h---Hh--hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR-V---WR--DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~-~---~~--~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... . .. .....+|.+++|+|+.... ........+... -.+..+|+||.|...
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq---~a~~~a~~f~~~----~~i~gVIlTKlD~~~ 253 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ---QAYNQALAFKEA----TPIGSIIVTKLDGSA 253 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHHS----CTTEEEEEECCSSCS
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch---hHHHHHHHHHhh----CCCeEEEEECCCCcc
Confidence 46789999999543221 1 11 1123579999999987632 233333444322 235679999999754
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.47 E-value=3.7e-07 Score=75.66 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
..++++|++|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 358899999999999999999874
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.8e-07 Score=74.34 Aligned_cols=60 Identities=17% Similarity=0.152 Sum_probs=42.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccC-CCcceeEEE-------eCCEEEEEEEcCCCcc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPT-LHPTSEELS-------MGDIVFTTHDLGGHVQ 77 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t-~~~~~~~~~-------~~~~~~~~~d~~g~~~ 77 (194)
..+...|+|+|.||+|||||+|++++.... .+..| .+.+.+... ..+..+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 456788899999999999999999987642 22222 233333322 2457899999999754
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=65.09 Aligned_cols=66 Identities=14% Similarity=0.079 Sum_probs=38.9
Q ss_pred CEEEEEEEcCCCcc--chh----hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 64 DIVFTTHDLGGHVQ--ARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 64 ~~~~~~~d~~g~~~--~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
+..+.++||||... ... ..... ....+.+++|+|+...... ......+... -.+..+++||.|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~----~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA----SPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH----CSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc----cCCcEEEEeccccc
Confidence 46788999999533 111 11111 2246899999999764322 2233333221 23578999999975
Q ss_pred C
Q psy2159 136 D 136 (194)
Q Consensus 136 ~ 136 (194)
.
T Consensus 252 a 252 (433)
T 3kl4_A 252 A 252 (433)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-05 Score=57.66 Aligned_cols=66 Identities=15% Similarity=0.043 Sum_probs=41.5
Q ss_pred CCEEEEEEEcCCCcc--chh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCC
Q psy2159 63 GDIVFTTHDLGGHVQ--ARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKID 133 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~--~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D 133 (194)
.+..+.++||||... ... ... .....+|.+++|+|.... .+.......+.. ..| ..+++||.|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 456799999999776 322 211 124468999999998642 233333333322 345 678999999
Q ss_pred CCC
Q psy2159 134 IFD 136 (194)
Q Consensus 134 ~~~ 136 (194)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 754
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.05 E-value=6.9e-06 Score=63.55 Aligned_cols=84 Identities=20% Similarity=0.131 Sum_probs=53.4
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC---HHHHHhhhcccCccCCCccCcc
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS---EDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~---~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
...++|.+++|... .|..-......+...... .++|.+||+||+|+.++.. .+++...+...+
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G---------- 192 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIG---------- 192 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTT----------
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCC----------
Confidence 36789999987664 455333332222222122 4678899999999976422 122333333323
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHH
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWL 189 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 189 (194)
.+++.+||+++.|++++...+
T Consensus 193 -------~~v~~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 193 -------YRVLMVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp -------CCEEECBTTTTBTHHHHHHHH
T ss_pred -------CcEEEEecCCCcCHHHHHHhc
Confidence 568999999999999988764
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=97.79 E-value=2e-06 Score=69.12 Aligned_cols=93 Identities=15% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEE--E-eCC-EEEEEEEcCCCcc--chhhH--------hh
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEEL--S-MGD-IVFTTHDLGGHVQ--ARRVW--------RD 84 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~--~-~~~-~~~~~~d~~g~~~--~~~~~--------~~ 84 (194)
..+..|+++|.+||||||+.++|...-.....+|.......+ . .++ ....+||..|... ....+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999988642111111111110000 0 011 2346788888732 23322 44
Q ss_pred hhhcCCEEEEEEECCCCCChHHHHHHHH
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPESKYELD 112 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~~~~~~ 112 (194)
++...++.++|+|.++.. ...-..|..
T Consensus 117 ~l~~~~G~~vV~D~tn~~-~~~R~~~~~ 143 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTT-RERRAMIFN 143 (469)
T ss_dssp HHHTTCCSEEEEESCCCS-HHHHHHHHH
T ss_pred HHHhCCCCEEEEeCCCCC-HHHHHHHHH
Confidence 555678889999998863 444334433
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.4e-05 Score=56.31 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=32.3
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
+.+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~I~~~g~~ 68 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIK 68 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC--------CCCCceEEEECCEE
Confidence 34444444544 558899999999999999986 33456677776643
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=97.70 E-value=4.4e-05 Score=55.29 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 22 ~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~ 67 (224)
T 2pcj_A 22 GISLSVKKGEFVSIIGASGSGKSTLLYILGLL--------DAPTEGKVFLEGKE 67 (224)
T ss_dssp EEEEEEETTCEEEEEECTTSCHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCceEEEECCEE
Confidence 3444444444 458899999999999999986 33455677776643
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.68 E-value=5.4e-05 Score=55.42 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=29.8
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++-.++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 17 ~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~ 60 (240)
T 2onk_A 17 NVDFEMGRDYCVLLGPTGAGKSVFLELIAGIV--------KPDRGEVRLNGA 60 (240)
T ss_dssp EEEEEECSSEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEETTE
T ss_pred eeEEEECCEEEEEECCCCCCHHHHHHHHhCCC--------CCCceEEEECCE
Confidence 34444444345588999999999999999872 234455555553
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=97.67 E-value=5e-05 Score=56.73 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=31.9
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl--------~~p~~G~I~~~G~~ 71 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI--------LKPSSGRILFDNKP 71 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC--------CCCCCeEEEECCEE
Confidence 34444444444 558899999999999999986 23455666666644
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.66 E-value=2.6e-05 Score=54.47 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++++|++|||||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999998865
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.65 E-value=5.8e-05 Score=56.00 Aligned_cols=46 Identities=15% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|..
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl--------~~p~~G~i~~~g~~ 69 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQN 69 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCcEEEECCEE
Confidence 34455555554 458899999999999999986 33455666666643
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=6.3e-05 Score=55.61 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=31.6
Q ss_pred HHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 12 LLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 12 ~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
++.+++..++.. ++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~--------~p~~G~i~~~g~ 69 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL--------KADEGRVYFENK 69 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCcEEEECCE
Confidence 334555555554 4588999999999999999862 344566666553
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.61 E-value=7.2e-05 Score=54.73 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=29.8
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 24 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~ 68 (240)
T 1ji0_A 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV--------RAQKGKIIFNGQ 68 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC--------CCCCceEEECCE
Confidence 344444444 45588999999999999999862 234455555553
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.8e-05 Score=57.13 Aligned_cols=45 Identities=29% Similarity=0.476 Sum_probs=30.9
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++..+ +++|++|||||||++.+.+-. .++.+.+.++|..
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~--------~p~~G~I~i~G~~ 67 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFE--------QPDSGEISLSGKT 67 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS--------CCSEEEEEETTEE
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC--------CCCCcEEEECCEE
Confidence 44455555554 578999999999999999873 3344555555543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.60 E-value=9.3e-05 Score=53.19 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=28.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.++++|+.|||||||++.+.+- ..++.+.+.+++..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~~ 72 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVP 72 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcC--------CCCCCeEEEECCEE
Confidence 4568899999999999999986 33456777777643
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=97.59 E-value=7e-05 Score=55.57 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=31.0
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
..+++..++.. ++++|+.|||||||++.+.+- ..++.+.+.++|.
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl--------~~p~~G~I~~~g~ 86 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL--------EDFDEGEIIIDGI 86 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTE
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC--------CCCCCcEEEECCE
Confidence 34444444554 558899999999999999986 2344566666654
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00024 Score=56.46 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=39.3
Q ss_pred CCEEEEEEEcCCCccchh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~ 135 (194)
.++.+.++||||...... ... .....++.+++|+|+.... ........+.. ..+ .-+++||.|..
T Consensus 182 ~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~-----~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 182 KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE-----ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH-----HSCCCCEEEECTTSS
T ss_pred CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc-----cCCCeEEEEecCCCC
Confidence 457899999999654322 111 1234689999999987542 22222233311 234 34799999975
Q ss_pred C
Q psy2159 136 D 136 (194)
Q Consensus 136 ~ 136 (194)
.
T Consensus 254 ~ 254 (433)
T 2xxa_A 254 A 254 (433)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.58 E-value=5.3e-05 Score=56.32 Aligned_cols=31 Identities=32% Similarity=0.532 Sum_probs=23.7
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++.. ++++|+.|||||||++.+.+-
T Consensus 29 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 29 DVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3444444444 558899999999999999986
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00011 Score=54.05 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=29.3
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|.
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~--------~p~~G~I~i~g~ 71 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY--------IPENGQVLIDGH 71 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--------CCCCcEEEECCE
Confidence 34444344 45588999999999999999872 234455555553
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.4e-05 Score=55.40 Aligned_cols=32 Identities=22% Similarity=0.281 Sum_probs=24.2
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++..++. .++++|+.|||||||++.+.+-
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3444444444 4558899999999999999987
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=4.1e-05 Score=53.40 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-++++|++|||||||++.+.+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35678899999999999999864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=54.13 Aligned_cols=31 Identities=23% Similarity=0.341 Sum_probs=23.7
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 33 ~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 33 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 344444454 4558899999999999999986
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=6.8e-05 Score=56.76 Aligned_cols=35 Identities=26% Similarity=0.217 Sum_probs=27.7
Q ss_pred HHHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHc
Q psy2159 9 REVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~ 43 (194)
..++..+++..++.+ ++++|++|||||||++.+.+
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHH
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhh
Confidence 456777777766654 55889999999999999885
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.53 E-value=3.5e-05 Score=55.50 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=20.6
Q ss_pred HHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 10 EVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 10 ~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
+.+..+++..+..+ ++++|++|||||||++.+.+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35566666665554 5588999999999999998753
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.53 E-value=8e-05 Score=55.57 Aligned_cols=34 Identities=32% Similarity=0.556 Sum_probs=28.0
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..+++..+.. +++.|++|+|||||++.+.+.
T Consensus 34 ~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 34 DQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp HHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 3667777666655 899999999999999999874
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00011 Score=54.62 Aligned_cols=45 Identities=29% Similarity=0.365 Sum_probs=30.2
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
+.+++..++.. ++++|+.|||||||++.+.+-. .++.+.+.+++.
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~--------~p~~G~I~~~g~ 69 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI--------EPTSGDVLYDGE 69 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS--------CCSEEEEEETTE
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCCcEEEECCE
Confidence 33444444554 5588999999999999999862 234455555553
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=8.7e-05 Score=54.19 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=23.4
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 23 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 23 GITFSIPEGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344444444 4558899999999999999986
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00013 Score=52.08 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=26.0
Q ss_pred HHHHHHHhCC-cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGL-WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+..++.. ..+...++++|++|||||||++.+.+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444432 244556778899999999999998864
|
| >4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.001 Score=46.94 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=50.3
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCC-CCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADD-ALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+.+.++|+|+.. .......+..+|.+++++..+... ......+..+.... ..++.++.+|+|+.|.... ...+
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~ 149 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV 149 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence 3678999999876 334455567799999999876643 55555444443321 1345678999999995432 2234
Q ss_pred HHhhhc
Q psy2159 143 VRHFFG 148 (194)
Q Consensus 143 ~~~~~~ 148 (194)
+.+.++
T Consensus 150 ~~~~l~ 155 (206)
T 4dzz_A 150 LKESIK 155 (206)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=53.33 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=22.8
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++. .++++|+.|||||||++.+.+.
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 33333344 4558899999999999999986
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00016 Score=56.25 Aligned_cols=46 Identities=28% Similarity=0.529 Sum_probs=31.0
Q ss_pred HhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 14 RLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 14 ~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
.+++..+... ++++|++|||||||++.+.+-. .++.+.+.+++..+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i~g~~~ 67 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE--------EPSRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS--------CCSEEEEEETTEEE
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC--------CCCccEEEECCEEC
Confidence 3444444444 4588999999999999999873 24455565555443
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00012 Score=56.70 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=30.2
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++..+ .++|++|||||||++.+.+-. .++.+.+.++|.
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~--------~p~~G~I~i~G~ 90 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE--------RPTEGSVLVDGQ 90 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS--------CCSEEEEEETTE
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC--------CCCceEEEECCE
Confidence 44455555554 588999999999999999873 234455555553
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=5e-05 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++||+|||||||++.+.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36789999999999999999863
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.50 E-value=7.4e-05 Score=54.76 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=24.3
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++.. ++++|+.|||||||++.+.+-
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34444445554 558899999999999999986
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00012 Score=54.88 Aligned_cols=31 Identities=35% Similarity=0.566 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+.
T Consensus 39 ~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 39 KISWQIAKGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344444444 4568899999999999999986
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00017 Score=57.43 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..-|.|+|++++|||||+|++++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 44555668899999999999999863
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=56.75 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=24.4
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCC
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~ 45 (194)
.+++..++..+ +++|++|||||||++.+.+-.
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 34445555544 578999999999999999873
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00014 Score=53.45 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+.
T Consensus 18 ~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 18 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 344444444 4558899999999999999986
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=56.22 Aligned_cols=33 Identities=30% Similarity=0.314 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34444544544 4588999999999999999873
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=56.07 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34444444444 4588999999999999999873
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.46 E-value=7.7e-05 Score=52.22 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++++|++||||||+++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35678899999999999999875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00011 Score=50.97 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+.+...+... +.-.+++.|++|+|||||++.+.+.
T Consensus 24 ~~~~~~~~~~~~~-~g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 24 LTIRVFVHNFNPE-EGKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp HHHHHHHHSCCGG-GCCEEEECCSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455544422 2445678899999999999998764
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.46 E-value=6.1e-05 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++||||||+++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4678899999999999999875
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00016 Score=56.14 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=24.7
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..+... ++++|++|||||||++.+.+-.
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34444555554 4588999999999999999873
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00012 Score=50.12 Aligned_cols=35 Identities=23% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~ 45 (194)
.+..+++..++..+ +++|+.|||||||++.+.+.-
T Consensus 22 ~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 22 AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45566666666655 577999999999999999863
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00018 Score=56.00 Aligned_cols=33 Identities=36% Similarity=0.499 Sum_probs=24.7
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..+... ++++|++|||||||++.+.+-.
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 34444555554 4588999999999999999874
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=97.41 E-value=7.6e-05 Score=53.20 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++|||||||++.+.+.
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4558899999999999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=55.32 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.5
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 72 ~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 72 DVSFTVMPGQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp EEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred eeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence 344444333 5668899999999999999986
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00025 Score=52.54 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=23.3
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
+++..+.-.++++|+.|||||||++.+.+..
T Consensus 24 vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 24 INLEVNGEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECSSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3333342356688999999999999999873
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00014 Score=56.30 Aligned_cols=46 Identities=24% Similarity=0.381 Sum_probs=31.0
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
..+++..+... ++++|++|||||||++.+.+-. .++.+.+.+++..
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~--------~p~~G~I~i~g~~ 68 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLD--------VPSTGELYFDDRL 68 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS--------CCSEEEEEETTEE
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCEE
Confidence 34455555554 4588999999999999999873 2344555555543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00014 Score=56.14 Aligned_cols=33 Identities=33% Similarity=0.509 Sum_probs=24.6
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcCC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~~ 45 (194)
..+++..++.. ++++|++|||||||++.+.+-.
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33444444544 4588999999999999999873
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=9.1e-05 Score=53.44 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-++++||+|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 55678999999999999998753
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=8.4e-05 Score=51.38 Aligned_cols=24 Identities=17% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCCCeE-EEEcCCCCChHHHHHHHH
Q psy2159 19 KKSGKL-LFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 19 ~~~~~i-~v~G~~~~GKStli~~~~ 42 (194)
.++..+ +++|++|||||||++.+.
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHc
Confidence 344444 477999999999999754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=53.27 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHH
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~ 42 (194)
+...++++|++||||||+++.+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999999
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00014 Score=51.87 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
+..-++++||+||||||+++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34456788999999999999998753
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00017 Score=53.39 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=25.1
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..++ ..+.-.++++|++||||||+++.+.+.
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHh
Confidence 455555 344456778899999999999998874
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00019 Score=52.65 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=25.7
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..++...+.. +++.|++|+||||+++.+.+.
T Consensus 40 ~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 40 RFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp HHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 455555544444 889999999999999999875
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00014 Score=51.43 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
...++++|++||||||+++.+.+.-
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3467788999999999999998764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00013 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=20.1
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++...+. .|+++|++||||||+.+.+...
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 44555554444 6778899999999999998753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00011 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..|+++|++||||||+.+.+.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999874
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=97.31 E-value=6.7e-05 Score=54.37 Aligned_cols=36 Identities=19% Similarity=0.171 Sum_probs=17.5
Q ss_pred HHHHHHhCCcCCCCe-EEEEcCCCCChHHHHHHHH-cC
Q psy2159 9 REVLLRLGLWKKSGK-LLFLGLDNAGKTFLLQMLK-ND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~-i~v~G~~~~GKStli~~~~-~~ 44 (194)
++.+...++..++.+ ++++|++||||||+++.+. +.
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC--
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 445666666665554 5577999999999999999 64
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00012 Score=51.82 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-++++||+|||||||++.|.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 335667899999999999999864
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00015 Score=51.67 Aligned_cols=25 Identities=32% Similarity=0.224 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...++++|++||||||+++.+.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3346778999999999999998874
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00025 Score=53.35 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=23.4
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 334444444 4558899999999999999986
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00015 Score=51.43 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-|+++|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346778899999999999999764
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=50.81 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-++++|++||||||+++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 356889999999999999985
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=50.93 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...++++|++||||||+++.+.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3446778899999999999999764
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0003 Score=52.07 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=24.0
Q ss_pred HHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++. .++++|+.|||||||++.+.+-
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3444444444 4558899999999999999986
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=52.60 Aligned_cols=33 Identities=12% Similarity=-0.014 Sum_probs=20.3
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHc
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~ 43 (194)
.+..+++..++. -++++|+.||||||+++.+.+
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 566666666555 466889999999999999876
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00015 Score=49.72 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999754
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=50.70 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 778899999999999999754
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0002 Score=50.63 Aligned_cols=24 Identities=17% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|+++|++||||||+++.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 456888999999999999998764
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00018 Score=49.73 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467889999999999999987
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0003 Score=52.42 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=25.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++..+.. ++++|++|+|||||++.+.+.
T Consensus 64 ~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 64 RFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp HHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 455555544444 889999999999999999875
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00021 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00021 Score=48.96 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=17.7
Q ss_pred eEEEEcCCCCChHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQML 41 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~ 41 (194)
-|++.|++||||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5778899999999999999
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00025 Score=52.15 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=24.6
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++........+..|+++|++||||||+.+.+...
T Consensus 22 ~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 22 LTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3333333345567778899999999999998763
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00039 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.-|++.|++||||||+.+.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344566779999999999999975
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998763
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00058 Score=54.05 Aligned_cols=67 Identities=13% Similarity=0.039 Sum_probs=37.9
Q ss_pred CCEEEEEEEcCCCccchh-hHh-----hhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARR-VWR-----DYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~-~~~-----~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.++.+.++||||...... ... ...-.+|.+++|+|.... .........+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 346789999999653321 111 112358999999998642 2333333333221 112467889999643
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00022 Score=50.93 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|+++|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999964
|
| >3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0035 Score=44.59 Aligned_cols=79 Identities=13% Similarity=0.076 Sum_probs=48.6
Q ss_pred CEEEEEEEcCCC-ccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH
Q psy2159 64 DIVFTTHDLGGH-VQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142 (194)
Q Consensus 64 ~~~~~~~d~~g~-~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e 142 (194)
.+.+.++|+|+. ... .....+..+|.+++++..+. .+.......+..+.... +.++.+++|+.|........+
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~~~~~~ 140 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG---NNRFRILLTIIPPYPSKDGDE 140 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTSCHHHH
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccchHHHH
Confidence 367899999987 432 23445677999999987644 23444444444443321 567889999999654112345
Q ss_pred HHhhhc
Q psy2159 143 VRHFFG 148 (194)
Q Consensus 143 ~~~~~~ 148 (194)
+.+.++
T Consensus 141 ~~~~l~ 146 (209)
T 3cwq_A 141 ARQLLT 146 (209)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.19 E-value=7.1e-05 Score=51.86 Aligned_cols=51 Identities=16% Similarity=-0.008 Sum_probs=27.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
.+.++|++|||||||++.+.+... + .+...+.+..++..+.-+|.++.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~----~-~g~~~G~I~~dg~~i~~~~~~~~d~~ 54 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR----E-RGLRVAVVKRHAHGDFEIDKEGKDSW 54 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH----H-TTCCEEEEEC------------CHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh----h-cCCceEEEEEcCcccccCCccchhHH
Confidence 577999999999999999987511 1 12225677777766544554444433
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00022 Score=50.88 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.|+++|+|||||+|....+...
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999865
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00024 Score=49.44 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|+++|++||||||+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 447889999999999999999753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=55.70 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=22.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
.-.++++|++|||||||+|.+.+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 34678999999999999999998644
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00024 Score=51.06 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..|+++|++||||||+.+.+.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999763
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00025 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=19.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++++|++||||||+++.+.+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 35678899999999999998753
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0003 Score=49.12 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999865
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00027 Score=51.73 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+++.|++.|++||||||+.+.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4677899999999999999999975
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00025 Score=50.20 Aligned_cols=21 Identities=24% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|+++|++||||||+.+.+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 688999999999999999987
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00045 Score=49.12 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.+++.||||+||||++.++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35888899999999998888763
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00029 Score=58.08 Aligned_cols=34 Identities=15% Similarity=0.301 Sum_probs=26.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+-
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 566666665555 5568899999999999999986
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-|+++|++||||||+++.+.+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445668899999999999988764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00028 Score=49.34 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34577889999999999999875
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00019 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.++++|+.|||||||++.+.+.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35678999999999999999876
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=48.62 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35778899999999999999863
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00029 Score=49.13 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4688889999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00038 Score=49.14 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=22.1
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...+..|++.|++||||||+.+.|..
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34556788999999999999999875
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=52.04 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=23.3
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 21 GVNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444 4558899999999999999985
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00027 Score=49.18 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=20.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34688899999999999999974
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00025 Score=49.93 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++|++||||||+++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5789999999999999998864
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00034 Score=50.49 Aligned_cols=24 Identities=13% Similarity=0.246 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 446788999999999999999975
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=52.39 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=23.6
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++. .++++|+.|||||||++.+.+-
T Consensus 38 ~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 38 GLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 344444444 4558899999999999999985
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00031 Score=49.47 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5789999999999999999863
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00032 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+++|++||||||+.+.+.+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5789999999999999999873
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00036 Score=49.84 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00029 Score=49.13 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 477889999999999999876
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00043 Score=48.46 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 445788999999999999999875
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=50.17 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467889999999999999998753
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00043 Score=48.84 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+++.|...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457889999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0011 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||+++..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67889999999999999988764
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0003 Score=51.86 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=23.7
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.+++..++. .++++|+.|||||||++.+.+-.
T Consensus 23 ~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 23 QLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344444444 45588999999999999999863
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00037 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45678889999999999999976
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00043 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|+++|++||||||+++.+.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3446778899999999999999875
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=50.32 Aligned_cols=27 Identities=22% Similarity=0.070 Sum_probs=20.9
Q ss_pred cCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
..++.. ++++|++|||||||++.+.+.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 334444 557799999999999999873
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00039 Score=48.53 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=19.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999998875
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00045 Score=49.05 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|.+||||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 456788899999999999999875
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00049 Score=48.90 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999999999885
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=54.85 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=23.0
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++. .++++|+.|||||||++.+.+-
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 34333333 5668899999999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0004 Score=52.46 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=21.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|++|||||||+|.+.+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3567899999999999999998643
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0017 Score=49.35 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=23.0
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++..+++.|+||+|||++++.+...
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 456778889999999999999998864
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00093 Score=46.14 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHH
Confidence 4456888899999999999988764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00039 Score=52.84 Aligned_cols=25 Identities=16% Similarity=0.061 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+..-++++|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3444566889999999999999886
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00042 Score=48.81 Aligned_cols=26 Identities=19% Similarity=0.152 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...|+++|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45567889999999999999999875
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00057 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~ 42 (194)
.+...|+++|++||||||+++.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345678899999999999999998
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00076 Score=50.69 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.-|+|.|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556778899999999999998764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00045 Score=47.17 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999876
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00051 Score=47.58 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.+...
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 3456888999999999999999853
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+++|++||||||+.+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999998753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00076 Score=52.58 Aligned_cols=37 Identities=24% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...+..++...+.. .+++.|++|+|||||++.+.+.
T Consensus 155 ~~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 155 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 455666666555444 5567799999999999999863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00081 Score=52.66 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=23.8
Q ss_pred HHhCCcCCCCe-EEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGK-LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~-i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++.. +.++|++|||||||++.+.+-
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 33444444444 458899999999999999985
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00044 Score=48.00 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++|||||||++++...
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5668899999999999999864
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0007 Score=52.52 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.. +...++++|+.|||||||++.+.+.
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTT
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhc
Confidence 4444333 4457778899999999999999986
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00044 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-++++|++|||||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 356788999999999999999 53
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00083 Score=55.58 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=29.3
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++..++. .++++|+.|||||||++.+.+-. .++.+.+.++|
T Consensus 373 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~--------~p~~G~i~~~g 416 (598)
T 3qf4_B 373 DITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY--------DVDRGQILVDG 416 (598)
T ss_dssp SEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS--------CCSEEEEEETT
T ss_pred ceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc--------CCCCeEEEECC
Confidence 344343333 56688999999999999999862 33445555555
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00081 Score=45.36 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|++|+|||||++.+.+.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4446778899999999999999874
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00055 Score=52.43 Aligned_cols=35 Identities=11% Similarity=0.051 Sum_probs=25.6
Q ss_pred HHHHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
++..+++.. +.-.++++|++|||||||++.+.+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 444444332 33467789999999999999999863
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00058 Score=49.47 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=22.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+...|++.|++||||||+.+.|...
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345568999999999999999998753
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00051 Score=49.21 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999998753
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00015 Score=55.01 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-.++++|++|||||||+|.+.+..
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 3467789999999999999998763
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0007 Score=53.52 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.2
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+ +..+.--++++|+.||||||+++.+.+.
T Consensus 158 ~L~~l-~~~~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 158 NFRRL-IKRPHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp HHHHH-HTSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHH-HHhcCCeEEEECCCCCCHHHHHHHHHhh
Confidence 34444 3344446778899999999999998874
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00055 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.150 Sum_probs=20.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..++-++++|++||||||+++.+.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455677999999999999998865
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00068 Score=55.86 Aligned_cols=43 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++..++. .++++|+.|||||||++.+.+- ..++.+.+.++|
T Consensus 359 ~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~--------~~p~~G~i~~~g 402 (578)
T 4a82_A 359 DINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDG 402 (578)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETT
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCcEEEECC
Confidence 334333333 5668899999999999999886 234445555555
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00061 Score=47.79 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...|++.|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356888999999999999998764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00063 Score=47.41 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|.+||||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4456778899999999999998753
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00062 Score=49.03 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00063 Score=48.13 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..-++++|++||||||+++.+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 344567889999999999998875
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00074 Score=47.65 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=19.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|++||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34677889999999999999875
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00064 Score=47.44 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|.+||||||+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999999976
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00044 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.-+++++|++|||||||++.+.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999998763
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00051 Score=47.55 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=16.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
...|++.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45678889999999999999874
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00066 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...++++|++||||||+++.+.+.
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 34447889999999999999998764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00062 Score=47.26 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|+++|++||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0007 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|+++|++||||||+.+.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345677889999999999999876
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00041 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.573 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHHcCC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~ 45 (194)
++++|+.||||||+++.+.+..
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEecCCCCHHHHHHHHHhhc
Confidence 4467999999999999999763
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00077 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=19.9
Q ss_pred CCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+..+|+ ++|+|||||+|....|...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344555 6699999999999998865
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00071 Score=51.26 Aligned_cols=25 Identities=16% Similarity=0.069 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-++++|++|||||||++.+.+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3456778899999999999998873
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00087 Score=48.70 Aligned_cols=26 Identities=19% Similarity=0.087 Sum_probs=21.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..++.|++.|++||||||+.+.+...
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568889999999999999998753
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0012 Score=45.43 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34557888899999999999988764
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00068 Score=49.89 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|++||||||+.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 3568899999999999998753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0014 Score=47.12 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5567889999999999999988753
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00078 Score=48.16 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..|++.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45688899999999999999986
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00074 Score=46.27 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5788999999999999998763
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.001 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=21.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++|++||||||+++.+.+.
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3445889999999999999999875
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.001 Score=50.36 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.-.++++|++||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34667889999999999999885
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00089 Score=46.61 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3577889999999999999875
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00088 Score=45.80 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 567889999999999999876
|
| >3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.04 Score=40.43 Aligned_cols=77 Identities=6% Similarity=0.004 Sum_probs=47.4
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVR 144 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~ 144 (194)
+.+.++|+|+... ......+..+|.+++++..+. .+.......+..+... ..+.++.+|+|+.+... ...++.
T Consensus 145 yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~-~s~~~~~~~~~~l~~~--~~~~~~~vv~N~~~~~~--~~~~~~ 217 (267)
T 3k9g_A 145 YDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEK-WAVESLDLFNFFVRKL--NLFLPIFLIITRFKKNR--THKTLF 217 (267)
T ss_dssp CSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCT-THHHHHHHHHHHHHTT--TCCCCEEEEEEEECTTC--SCCHHH
T ss_pred CCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCCh-HHHHHHHHHHHHHHHH--hccCCEEEEEecccCcc--hHHHHH
Confidence 5688999988652 233445667999999998754 3455554444444322 23567889999994322 234555
Q ss_pred hhhc
Q psy2159 145 HFFG 148 (194)
Q Consensus 145 ~~~~ 148 (194)
+.++
T Consensus 218 ~~l~ 221 (267)
T 3k9g_A 218 EILK 221 (267)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 5553
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0016 Score=43.50 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++.+.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998865
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00094 Score=49.28 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..|++.|.+||||||+.+.+..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 3577889999999999999875
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00093 Score=51.18 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45888999999999999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00093 Score=52.02 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|++||||||+++.+.+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4446778899999999999999874
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=50.11 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=29.1
Q ss_pred CccHHHHHHHHHHHhCCcC---CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 1 MFEIWTKFREVLLRLGLWK---KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
|+.+-......+..+.... ...+++++|++|+||||+.+.+..
T Consensus 1 ~~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp -CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455555555666654322 234688999999999999987765
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.493 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++.|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446889999999999999999864
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00034 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|++.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4678899999999999998753
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00085 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|+.||||||+++.+.+.
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4558899999999999988863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0012 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.++|++||||||++.++...
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5678899999999999998863
|
| >3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0064 Score=43.82 Aligned_cols=89 Identities=18% Similarity=0.032 Sum_probs=46.8
Q ss_pred cCCCCeEEEE--cCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEE-EcCCCccchhhHhhh--------h
Q psy2159 18 WKKSGKLLFL--GLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH-DLGGHVQARRVWRDY--------F 86 (194)
Q Consensus 18 ~~~~~~i~v~--G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~-d~~g~~~~~~~~~~~--------~ 86 (194)
..|+=||+|+ |+++.||++|++++++.....-..+.+.+. ...|-...+.+| |.-.. .......+ -
T Consensus 24 ~~P~nkilvl~~~~~~~~~~~~~~~lf~~~~~~~~i~k~v~w-~TKYYsa~V~IwVDe~~~--l~~W~~EF~SdEA~EVR 100 (233)
T 3uc9_A 24 QYPQNKILVLSDHPHNFLKTQFLQDLFHCSSTGISIVKDQTW-ENRYYKVHFDLYIDSCKD--IPVWVEEFITPECEPLR 100 (233)
T ss_dssp CCCCCEEEEEEEGGGHHHHHHHHHHHHCCCCCSSCEEEEEEE-ECSSCEEEEEEEEEEESC--HHHHHHHHTSGGGHHHH
T ss_pred ecCCCceEEEecCcccccHHHHHHHHhcccccccccccCCee-eeceEEEEcceEEEecCC--HHHHHHHhcCHHHHHHH
Confidence 3466688877 999999999999999874221111111121 111112345554 44321 11111111 1
Q ss_pred hcCCEEEEEEECCCCCChHHHHH
Q psy2159 87 PAVDAIVFIIDASDRSRFPESKY 109 (194)
Q Consensus 87 ~~~d~ii~v~d~~~~~~~~~~~~ 109 (194)
.-.+++|+|++...+.....+..
T Consensus 101 ~viggII~~f~~p~~~~~~~i~~ 123 (233)
T 3uc9_A 101 NVMAGIILITDIRQTKPQELLHQ 123 (233)
T ss_dssp HTEEEEEEEECHHHHCGGGTHHH
T ss_pred HhcceEEEEEeCCCcchHHHHHH
Confidence 22478999998766554544443
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0017 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.++|+.|||||||++.+.+-
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5668899999999999999886
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0019 Score=46.25 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+||||+++.+...
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35778899999999999988753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0011 Score=50.71 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=36.9
Q ss_pred EEEEEEEcCCCccchhh----Hhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRV----WRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~----~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.+.|++|....... .... .-..|-.++++|.... .+.......+... -....+++||.|...
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~----~~it~iilTKlD~~a 282 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA----VKIDGIILTKLDADA 282 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH----SCCCEEEEECGGGCS
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh----cCCCEEEEeCcCCcc
Confidence 44667899996532221 1111 1247889999997664 2444444444321 123478899999633
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00099 Score=47.77 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.--++++|++|+|||||++.+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 333456779999999999999884
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0013 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=20.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345678889999999999999984
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00092 Score=48.35 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=20.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..-|++.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 345668899999999999998875
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00091 Score=53.82 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-++++|++||||||+++.+.+
T Consensus 295 VI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCcccHHHHHHHHHH
Confidence 455889999999999998876
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0077 Score=47.01 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34568889999999999999999764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=46.79 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.|++||||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3445678899999999999998753
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0014 Score=49.12 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 35668889999999999999999874
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0025 Score=44.98 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=48.08 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+...|++.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 445788899999999999999876
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0014 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-|++.|++||||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445667799999999999998864
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0015 Score=49.05 Aligned_cols=30 Identities=13% Similarity=0.182 Sum_probs=21.6
Q ss_pred hCCcCCCCeE-EEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKL-LFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i-~v~G~~~~GKStli~~~~~~ 44 (194)
+....++..+ +++|++|+|||||++.+.+.
T Consensus 28 i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 28 KTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp HHCSBCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3334444444 57799999999999988753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=46.41 Aligned_cols=25 Identities=24% Similarity=0.258 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457789999999999999999864
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0013 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=19.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.-.+++|+.||||||+++.+..
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 34567889999999999999865
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0014 Score=47.49 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=21.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++.++|+|||||||+.+.+...
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988763
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0012 Score=48.61 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=25.6
Q ss_pred HHHHhCCcCC----CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 11 VLLRLGLWKK----SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 11 ~~~~~~~~~~----~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.+++... ...|+++|++||||||+.+.+.+
T Consensus 34 ~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence 4555555543 45788999999999999999976
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.017 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|+||+|||++++.+...
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999875
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=52.90 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-.++++|+.|||||||++.+.+.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCc
Confidence 4446779999999999999999875
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=49.98 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=18.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++++|+.||||||+++.+.+.
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHhh
Confidence 4558899999999999988863
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0018 Score=46.97 Aligned_cols=27 Identities=15% Similarity=0.178 Sum_probs=22.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
-+.+...|+++|++||||||+.+.+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345667889999999999999999885
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0017 Score=48.80 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+.-+++.|+||+|||++++.+...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456667799999999999999865
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0019 Score=48.54 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 3455789999999999999986664
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0019 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
+++.|++|+||||+++.+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 88999999999999998877
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.002 Score=51.24 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=25.8
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.+..+ +..... ++.++|++|||||||++.+.+..
T Consensus 147 vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 147 AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44555 454444 66789999999999999999863
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0023 Score=45.48 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.--++++|++|+|||||+..+..
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3444556779999999999999986
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=48.03 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34557889999999999999999865
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.002 Score=47.11 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++.|++|+|||++++.+...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4456888899999999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0024 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 45688999999999999999863
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0016 Score=58.58 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-++.++|++|||||||++.+.+-
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcC
Confidence 4457889999999999999999986
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.003 Score=50.06 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=26.5
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...++ .++..+++.||||+|||++++++.+.
T Consensus 206 ~f~~~g~-~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 206 KFKDMGI-RAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp HHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4555653 45678889999999999999999975
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0033 Score=49.80 Aligned_cols=34 Identities=24% Similarity=0.513 Sum_probs=26.8
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+|+ .++.-+++.||||+|||++++++.+.
T Consensus 196 ~~~~~~g~-~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 196 DLYEQIGI-DPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp HHHHHHCC-CCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45566664 34557889999999999999999975
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0011 Score=49.87 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=18.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.-|++.|++||||||+.+.|..
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3456688999999999999998875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0029 Score=48.47 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.|++|+||||+++.+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998874
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=54.13 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=20.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-++++|+.|||||||++.+.+...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 455889999999999999998643
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.-++.++|++|+|||||++.+.+.
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3447779999999999999999987
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0033 Score=48.64 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6888899999999999998864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.--++++|++|+|||||+..+...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445567899999999999999873
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0019 Score=48.46 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 467889999999999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0022 Score=48.27 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.0
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34556888899999999999999875
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0036 Score=49.70 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.2
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 205 ~~f~~~g~-~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 205 EIFQRVGI-KPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp HHHHHHCC-CCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHHhCCC-CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 35556663 45668889999999999999999975
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0036 Score=56.41 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=29.7
Q ss_pred HhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++.. +.-.++++|+.|||||||++.+.+- ..++.+.+.++|
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ll~~~--------~~~~~G~I~idG 479 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIISLLLRY--------YDVLKGKITIDG 479 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHHHHTTS--------SCCSEEEEEETT
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHHHhccc--------cccccCcccCCC
Confidence 344333 3346678899999999999999986 334455555555
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0042 Score=48.03 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34457888899999999999998863
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0033 Score=49.28 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=27.5
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 171 pe~f~~~gi-~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 171 PELFESLGI-AQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp HHHHHHHTC-CCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHHHHhCCC-CCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 345566664 44567899999999999999999875
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0058 Score=45.99 Aligned_cols=110 Identities=17% Similarity=0.167 Sum_probs=58.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC-------CCC----cc-ccC-----------CCcceeEE-----------EeCCE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND-------RTA----QH-MPT-----------LHPTSEEL-----------SMGDI 65 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~-------~~~----~~-~~t-----------~~~~~~~~-----------~~~~~ 65 (194)
+.-.++++|++|+||||++..+... +.. .. .++ .+...... ...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3446778899999999999987632 110 00 000 00000000 11345
Q ss_pred EEEEEEcCCCccchh-hH---hhhhh--cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 66 VFTTHDLGGHVQARR-VW---RDYFP--AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 66 ~~~~~d~~g~~~~~~-~~---~~~~~--~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
.+.++||+|...... .. ...+. ..+.+++|+|.+.. ...+..+...+ ..-+ ..-++.||.|...
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~----~~l~-~~giVltk~D~~~ 253 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRF----SSVP-VNQYIFTKIDETT 253 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTT----SSSC-CCEEEEECTTTCS
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHH----hcCC-CCEEEEeCCCccc
Confidence 789999999764432 11 12222 35678899987752 33333322222 1112 2346679999754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0022 Score=52.37 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
-.++++|+.|||||||++.+.+..
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 356688999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0058 Score=45.90 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.2
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||++++.+...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 46888899999999999998864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0019 Score=51.87 Aligned_cols=30 Identities=13% Similarity=-0.034 Sum_probs=22.4
Q ss_pred hCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++..++--++++|+.|||||||++.+.+.
T Consensus 23 vsl~i~~e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 23 RTFDFDELVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEEECCSSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEccceEEEECCCCCcHHHHHHHHhcC
Confidence 334444434568899999999999999874
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0045 Score=47.30 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999998864
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.003 Score=48.11 Aligned_cols=26 Identities=19% Similarity=0.438 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++..+++.|++|+|||++++.+...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCccHHHHHHHHHHH
Confidence 34567888999999999999999874
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0065 Score=45.98 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=25.2
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+....+.. +...+++.|++|+|||+|+..+...
T Consensus 140 ~~~~i~~~~~~-~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 140 ILDFVEQYPSA-EQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHCSCS-SCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHhcccc-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 33444443311 3568889999999999999988753
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0026 Score=42.82 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=17.1
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~ 42 (194)
-.+++|+.|+||||++.++.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 34677999999999999875
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0027 Score=48.92 Aligned_cols=26 Identities=23% Similarity=0.529 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+||||+++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457788899999999999998863
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=44.98 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=19.1
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|++||||||+.+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 678899999999999999876
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0043 Score=55.76 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=26.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.-.+.++|+.|||||||++.+.+-. .++.+.+.++|
T Consensus 416 G~~~~ivG~sGsGKSTl~~ll~g~~--------~~~~G~i~i~g 451 (1284)
T 3g5u_A 416 GQTVALVGNSGCGKSTTVQLMQRLY--------DPLDGMVSIDG 451 (1284)
T ss_dssp TCEEEEECCSSSSHHHHHHHTTTSS--------CCSEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC--------CCCCeEEEECC
Confidence 3356688999999999999998862 23445555555
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=47.53 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.|++|+|||++++.+...
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998864
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0035 Score=48.42 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+||||+++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44557888899999999999998864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0023 Score=47.10 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||++++.+...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 34788899999999999999864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0045 Score=50.59 Aligned_cols=33 Identities=24% Similarity=0.221 Sum_probs=25.5
Q ss_pred HHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..++...+...++++|++|+||||+++.+.+.
T Consensus 99 l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 99 VQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344444445667889999999999999998865
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0038 Score=50.15 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..+++.|++|+|||++++.+.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0026 Score=52.68 Aligned_cols=25 Identities=24% Similarity=0.398 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|+.|+|||||++.+.+...
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhcCCC
Confidence 3566889999999999999998643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0028 Score=46.87 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|++|+|||++++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567888899999999999999874
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=47.22 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=18.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
--++++|++|+|||||+..+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3456779999999999998875
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0038 Score=47.43 Aligned_cols=26 Identities=23% Similarity=0.531 Sum_probs=22.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+...+++.|+||+|||++++.+...
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 34567889999999999999999864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.15 E-value=0.002 Score=47.53 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=21.2
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+...|++.|.+||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345566778899999999999988764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=48.09 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+++.|++|+||||+++.+...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456888999999999999998864
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0023 Score=42.66 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=21.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999988764
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0053 Score=48.93 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=26.9
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+..+++ .++.-+++.||||+|||++++++.+.
T Consensus 233 e~f~~~Gi-~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 233 ERFATLGI-DPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp HHHHHHTC-CCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHHHHCCC-CCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 35556653 45667888899999999999999875
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0029 Score=51.16 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.4
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.|++|+|||+|++.+.+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34889999999999999999875
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0079 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+++.|++|+|||++++.+...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357888899999999999998854
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0055 Score=47.22 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=23.3
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
++...+...++ ++|++|+|||||+..+...
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34455566655 7799999999999999875
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0039 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.635 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++|+.|||||||++.+.+.
T Consensus 701 ivaIiGpNGSGKSTLLklLaGl 722 (986)
T 2iw3_A 701 RIAVIGPNGAGKSTLINVLTGE 722 (986)
T ss_dssp EEEECSCCCHHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5668899999999999999986
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0039 Score=44.42 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=20.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..|++.|++||||||+.+.+...
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~ 26 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASE 26 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457889999999999999988763
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.057 Score=40.77 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=17.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-+++-|++|+|||++++.+...
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHHH
Confidence 3445577999999999999865
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0046 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=19.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|+++|++||||||+.+.+...
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 34556799999999999998764
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0036 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-.++++|+.|||||||++.+.+...
T Consensus 118 e~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 118 MVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCC
Confidence 3566889999999999999998643
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0041 Score=45.13 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|++.|.+||||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 45677899999999999998864
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0073 Score=47.71 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=26.4
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++ .++.-+++.||||+|||++++++.+.
T Consensus 207 ~f~~~Gi-~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 207 LYEEMGI-KPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp HHHHHTC-CCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCCCceECCCCchHHHHHHHHHHH
Confidence 4555553 45567899999999999999999975
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0043 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+++|++||||||+...+...
T Consensus 7 ~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999998864
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0064 Score=48.78 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++.|+||+|||++++.+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0042 Score=50.74 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 56688999999999999999864
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0042 Score=44.91 Aligned_cols=28 Identities=21% Similarity=0.055 Sum_probs=19.6
Q ss_pred CCcCCCC-eEEEEcCCCCChHHHHHHHHc
Q psy2159 16 GLWKKSG-KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 16 ~~~~~~~-~i~v~G~~~~GKStli~~~~~ 43 (194)
+...++. -+++.|++|+|||||+..+..
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3334444 455779999999999776653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.004 Score=48.31 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.6
Q ss_pred eEEEEcCCCCChHHHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~ 42 (194)
-.+++|+.|||||||++.+.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 45588999999999999876
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0051 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...+++.|+||+|||++++.+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5668999999999999999999865
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0042 Score=48.21 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 45667999999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0049 Score=43.59 Aligned_cols=25 Identities=20% Similarity=0.081 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....++++|++|+||||+...+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3445788899999999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.004 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.++++|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46688999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 194 | ||||
| d1f6ba_ | 186 | c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr | 7e-35 | |
| d2qtvb1 | 166 | c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom | 7e-26 | |
| d1fzqa_ | 176 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-24 | |
| d1e0sa_ | 173 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 3e-24 | |
| d1moza_ | 182 | c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea | 2e-23 | |
| d1zj6a1 | 177 | c.37.1.8 (A:2-178) ADP-ribosylation factor {Human | 5e-22 | |
| d1r8sa_ | 160 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 1e-21 | |
| d1azta2 | 221 | c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub | 3e-21 | |
| d1ksha_ | 165 | c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus | 3e-19 | |
| d1zd9a1 | 164 | c.37.1.8 (A:18-181) ADP-ribosylation factor {Human | 9e-16 | |
| d2fh5b1 | 207 | c.37.1.8 (B:63-269) Signal recognition particle re | 3e-15 | |
| d1upta_ | 169 | c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo | 6e-14 | |
| d1zcba2 | 200 | c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub | 9e-14 | |
| d2bcjq2 | 200 | c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub | 3e-12 | |
| d1kaoa_ | 167 | c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: | 1e-11 | |
| d1svsa1 | 195 | c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub | 1e-11 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 3e-11 | |
| d1g16a_ | 166 | c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye | 4e-11 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 5e-11 | |
| d2bcgy1 | 194 | c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac | 6e-11 | |
| d2f7sa1 | 186 | c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T | 1e-09 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 2e-09 | |
| d2a5ja1 | 173 | c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta | 2e-09 | |
| d1u8za_ | 168 | c.37.1.8 (A:) Ras-related protein RalA {Cotton-top | 3e-09 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 3e-09 | |
| d2bmea1 | 174 | c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta | 3e-09 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 9e-09 | |
| d1z0fa1 | 166 | c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta | 2e-08 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 8e-08 | |
| d1ctqa_ | 166 | c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi | 9e-08 | |
| d1mh1a_ | 183 | c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96 | 2e-07 | |
| d1yzqa1 | 164 | c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta | 3e-07 | |
| d1c1ya_ | 167 | c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: | 3e-07 | |
| d2atxa1 | 185 | c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax | 3e-07 | |
| d2g6ba1 | 170 | c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T | 6e-07 | |
| d1z06a1 | 165 | c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) | 9e-07 | |
| d2ngra_ | 191 | c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: | 1e-06 | |
| d1wmsa_ | 174 | c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: | 1e-06 | |
| d1r2qa_ | 170 | c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: | 2e-06 | |
| d1ek0a_ | 170 | c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces | 3e-06 | |
| d1z08a1 | 167 | c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T | 6e-06 | |
| d1kmqa_ | 177 | c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9 | 1e-05 | |
| d1m7ba_ | 179 | c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T | 1e-05 | |
| d1i2ma_ | 170 | c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96 | 2e-05 | |
| d1z2aa1 | 164 | c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta | 2e-05 | |
| d2fn4a1 | 173 | c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T | 3e-05 | |
| d1puja_ | 273 | c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti | 5e-05 | |
| d1ky3a_ | 175 | c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y | 8e-05 | |
| d2erxa1 | 171 | c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [ | 9e-05 | |
| d1vg8a_ | 184 | c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId | 1e-04 | |
| d1x1ra1 | 169 | c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa | 8e-04 | |
| d1z0ja1 | 167 | c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [ | 9e-04 | |
| d2erya1 | 171 | c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [ | 0.003 |
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 119 bits (298), Expect = 7e-35
Identities = 117/184 (63%), Positives = 146/184 (79%)
Query: 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH 70
VL LGL+KK+GKL+FLGLDNAGKT LL MLK+DR QH+PTLHPTSEEL++ + FTT
Sbjct: 3 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTF 62
Query: 71 DLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGN 130
DLGGH+QARRVW++Y PA++ IVF++D +D R ESK ELD+L+ D+ + +VPILILGN
Sbjct: 63 DLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGN 122
Query: 131 KIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
KID +A SE+ +R FGLYG TTGK + L RP+E+FMCSVLKRQG+G GFRW+A
Sbjct: 123 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 182
Query: 191 NYID 194
YID
Sbjct: 183 QYID 186
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 95.9 bits (237), Expect = 7e-26
Identities = 98/171 (57%), Positives = 120/171 (70%), Gaps = 5/171 (2%)
Query: 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81
GKLLFLGLDNAGKT LL MLKNDR A PT HPTSEEL++G+I FTT DLGGH+QARR+
Sbjct: 1 GKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRL 60
Query: 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED 141
W+DYFP V+ IVF++DA+D RF E++ ELD L L DVP +ILGNKID +A SE
Sbjct: 61 WKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEA 120
Query: 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192
E+R GL T + RP+E+FMCSV+ R G+ F+WL+ Y
Sbjct: 121 ELRSALGLLNTTGSQRIE-----GQRPVEVFMCSVVMRNGYLEAFQWLSQY 166
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Score = 91.9 bits (227), Expect = 3e-24
Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 12/175 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
+ ++L LGLDNAGKT LL+ L ++ + PT + + D+GG +
Sbjct: 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKI 73
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R WR YF D ++++ID++DR RF E+ EL LL ++ L+ VP+LI NK D+ AA
Sbjct: 74 RPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA 133
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E+ L ++ R ++ CS L +G +G W+ +
Sbjct: 134 PASEIAEGLNL------------HTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Score = 91.6 bits (226), Expect = 3e-24
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 12/182 (6%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
+L K ++L LGLD AGKT +L LK ++ +PT+ E ++ ++ F D
Sbjct: 3 VLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWD 62
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG + R +WR Y+ ++F++D +DR R E++ EL ++ D + D ILI NK
Sbjct: 63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANK 122
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ DA E++ GL ++ R + G G WL +
Sbjct: 123 QDLPDAMKPHEIQEKLGL------------TRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170
Query: 192 YI 193
Sbjct: 171 NY 172
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Score = 89.6 bits (221), Expect = 2e-23
Identities = 55/186 (29%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67
F + +L K ++L LGLD AGKT +L L+ PT+ E LS ++
Sbjct: 4 FSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKL 63
Query: 68 TTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
DLGG R WR Y+ A++F++D++D+ R + EL +L ++ L D +L+
Sbjct: 64 NVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLV 123
Query: 128 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187
NK D A S EV L L+ R + S +K +G G
Sbjct: 124 FANKQDQPGALSASEVSKELNLVE------------LKDRSWSIVASSAIKGEGITEGLD 171
Query: 188 WLANYI 193
WL + I
Sbjct: 172 WLIDVI 177
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Score = 86.2 bits (212), Expect = 5e-22
Identities = 45/182 (24%), Positives = 81/182 (44%), Gaps = 13/182 (7%)
Query: 12 LLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHD 71
+ RL + K++ +GLDNAGKT +L + PT+ EE+ + + F D
Sbjct: 7 IWRL-FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWD 65
Query: 72 LGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131
+GG R W Y+ + ++ ++D++DR R ++ EL +LA + L +LI NK
Sbjct: 66 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANK 125
Query: 132 IDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLAN 191
D+ + + E+ F L ++ + C L +G G W+ +
Sbjct: 126 QDVKECMTVAEISQFLKL------------TSIKDHQWHIQACCALTGEGLCQGLEWMMS 173
Query: 192 YI 193
+
Sbjct: 174 RL 175
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Score = 84.3 bits (207), Expect = 1e-21
Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 12/171 (7%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
++L +GLD AGKT +L LK +PT+ E + +I FT D+GG + R +W
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE 142
R YF ++F++D++DR R E++ EL +LA+D L D +L+ NK D+ +A + E
Sbjct: 62 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAE 121
Query: 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ GL L+ R + G G WL+N +
Sbjct: 122 ITDKLGL------------HSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Score = 85.2 bits (210), Expect = 3e-21
Identities = 28/148 (18%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHV 76
+++ + +LL LG +GK+ +++ ++ + T + + + F D+GG
Sbjct: 2 VYRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQR 58
Query: 77 QARRVWRDYFPAVDAIVFIIDAS----------DRSRFPESKYELDNLLADDALTDVPIL 126
RR W F V AI+F++ +S +R E+ ++ + L + ++
Sbjct: 59 DERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVI 118
Query: 127 ILGNKIDIFDA---ASEDEVRHFFGLYG 151
+ NK D+ A + ++ +F +
Sbjct: 119 LFLNKQDLLAEKVLAGKSKIEDYFPEFA 146
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Score = 78.6 bits (192), Expect = 3e-19
Identities = 48/174 (27%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
+ +LL LGLDNAGKT +L+ + PTL + L D+GG R
Sbjct: 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR 60
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139
WR+YF + D +++++D++DR R + + EL +LL ++ L +LI NK D+ A S
Sbjct: 61 SYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS 120
Query: 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ ++ L ++ + CS + + G WL + I
Sbjct: 121 CNAIQEALELDS------------IRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Score = 69.3 bits (168), Expect = 9e-16
Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 13/175 (7%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
+ +L +GL +GKT + ++ + + +PT+ +++ G++ D+GG +
Sbjct: 1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRF 60
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R +W Y V AIV+++DA+D+ + SK EL NLL L +P+L+LGNK D+ A
Sbjct: 61 RSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL 120
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E E+ L +Q R + + S ++ +WL +
Sbjct: 121 DEKELIEKMNL------------SAIQDREICCYSISCKEKDNIDITLQWLIQHS 163
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Score = 68.9 bits (167), Expect = 3e-15
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 7/129 (5%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV- 81
+LF+GL ++GKT L L + ++ +S + + + L +
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLR 61
Query: 82 ---WRDYFPAVDAIVFIIDASDRSRFPES-KYELDNLLADDALTD--VPILILGNKIDIF 135
+ + A+VF++D++ R + L +L D +LI NK DI
Sbjct: 62 FQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA 121
Query: 136 DAASEDEVR 144
A S ++
Sbjct: 122 MAKSAKLIQ 130
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Score = 64.7 bits (156), Expect = 6e-14
Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 12/175 (6%)
Query: 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
+ ++L LGLD AGKT +L L+ +PT+ E ++ ++ F DLGG
Sbjct: 3 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSI 62
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R WR Y+ DA+++++D+ DR R SK EL +L ++ L +++ NK D+ A
Sbjct: 63 RPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM 122
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ E+ + G L+ R ++F S K G WL +
Sbjct: 123 TSSEMANSLG------------LPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 64.5 bits (156), Expect = 9e-14
Identities = 29/156 (18%), Positives = 65/156 (41%), Gaps = 14/156 (8%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVW 82
K+L LG +GK+ L+ ++ PT + + ++ F D+GG R+ W
Sbjct: 4 KILLLGAGESGKSTFLKQMRIIHG--QDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRW 61
Query: 83 RDYFPAVDAIVFIIDASDRSRF----------PESKYELDNLLADDALTDVPILILGNKI 132
+ F +V +I+F++ +S+ + ES + ++ + ++V I++ NK
Sbjct: 62 FECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT 121
Query: 133 DIFDAA--SEDEVRHFFGLYGLTTGKEFTPREILQM 166
D+ + +F G + +++
Sbjct: 122 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVEC 157
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.3 bits (145), Expect = 3e-12
Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 22/195 (11%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
+ KLL LG +GK+ ++ ++ +PT + ++F D+GG R
Sbjct: 1 RELKLLLLGTGESGKSTFIKQMRIIHG-SGVPTTGIIEYPFDLQSVIFRMVDVGGQRSER 59
Query: 80 RVWRDYFPAVDAIVFIIDASDRSR----------FPESKYELDNLLADDALTDVPILILG 129
R W F V +I+F++ S+ + ESK ++ + +++
Sbjct: 60 RKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFL 119
Query: 130 NKIDIFDAA--SEDEVRHFFGLYGLTTGKEFTPREILQM---------RPMELFMCSVLK 178
NK D+ + V +F G + IL+M + +
Sbjct: 120 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATD 179
Query: 179 RQGFGNGFRWLANYI 193
+ F + + I
Sbjct: 180 TENIRFVFAAVKDTI 194
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.0 bits (139), Expect = 1e-11
Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 23/178 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPT----LHPTSEELSMGDIVFTTHDLGGHVQA 78
K++ LG GK+ L + + E+ V D G Q
Sbjct: 5 KVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF 64
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI--FD 136
+ Y + + ++ F + K D ++ VP++++GNK+D+
Sbjct: 65 ASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESER 124
Query: 137 AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194
S E R +G S + F + ++
Sbjct: 125 EVSSSEGRALAEEWG-----------------CPFMETSAKSKTMVDELFAEIVRQMN 165
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 58.4 bits (140), Expect = 1e-11
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 16/150 (10%)
Query: 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79
+ KLL LG +GK+ +++ +K H + D+ F D+GG R
Sbjct: 1 REVKLLLLGAGESGKSTIVKQMKII----HEAGTGIVETHFTFKDLHFKMFDVGGQRSER 56
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKY----------ELDNLLADDALTDVPILILG 129
+ W F V AI+F + SD D++ + TD I++
Sbjct: 57 KKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFL 116
Query: 130 NKIDIFD--AASEDEVRHFFGLYGLTTGKE 157
NK D+F+ + G T +E
Sbjct: 117 NKKDLFEEKIKKSPLTICYPEYAGSNTYEE 146
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.2 bits (137), Expect = 3e-11
Identities = 26/176 (14%), Positives = 57/176 (32%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR---TAQHMPTLHPTSEELSMGD--IVFTTHDLGGHVQ 77
K++ +G GK+ LL + ++ + + + + I D G +
Sbjct: 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER 65
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
RR+ Y+ + + D + + + L L D A +++ I+++GNK D+
Sbjct: 66 YRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELR-DHADSNIVIMLVGNKSDLRHL 124
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + + S L F+ + I
Sbjct: 125 RAVPTDEAR---------------AFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.7 bits (136), Expect = 4e-11
Identities = 33/176 (18%), Positives = 59/176 (33%), Gaps = 22/176 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSE----ELSMGDIVFTTHDLGGHVQ 77
K+L +G GK+ LL D+ + T+ + +++ + D G +
Sbjct: 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 63
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ I+ + D +D F + + + + A + +L++GNK D
Sbjct: 64 FRTITTAYYRGAMGIILVYDITDERTF-TNIKQWFKTVNEHANDEAQLLLVGNKSD---- 118
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E R G KE + S F LA I
Sbjct: 119 ---METRVVTADQGEALAKEL---------GIPFIESSAKNDDNVNEIFFTLAKLI 162
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (136), Expect = 5e-11
Identities = 35/176 (19%), Positives = 57/176 (32%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR---TAQHMPTLHPTSEELSMGD--IVFTTHDLGGHVQ 77
KLL +G GKT +L D T + + + I D G +
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ I+ + D ++ F + + N+ + DV +ILGNK D+ D
Sbjct: 68 FRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEKMILGNKCDVNDK 126
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ R + ++ S N F LA I
Sbjct: 127 RQVSKERGEK---------------LALDYGIKFMETSAKANINVENAFFTLARDI 167
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.8 bits (136), Expect = 6e-11
Identities = 37/176 (21%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
KLL +G GK+ LL +D T ++ T+ + EL + D G +
Sbjct: 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER 67
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ I+ + D +D+ F K L + A + V L++GNK D+ D
Sbjct: 68 FRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEID-RYATSTVLKLLVGNKCDLKDK 126
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ M S L + F +A I
Sbjct: 127 RVVEYDVAKE---------------FADANKMPFLETSALDSTNVEDAFLTMARQI 167
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.4 bits (127), Expect = 1e-09
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 30/186 (16%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL--------------HPTSEELSMGDIVF 67
KLL LG GKT L +++ + + T+ P +
Sbjct: 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 66
Query: 68 TTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127
D G + R + +F + + D + + F + + L A+ + I++
Sbjct: 67 QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126
Query: 128 LGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187
+GNK D+ D +E + RE+ + F S Q
Sbjct: 127 IGNKADLPDQREVNERQA---------------RELADKYGIPYFETSAATGQNVEKAVE 171
Query: 188 WLANYI 193
L + I
Sbjct: 172 TLLDLI 177
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.5 bits (125), Expect = 2e-09
Identities = 32/176 (18%), Positives = 54/176 (30%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K+L +G GK+ LL +D A + + D G +
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQER 68
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ ++ + D + R F + L+ L D+ +++GNKID +
Sbjct: 69 FRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENR 128
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
EV + + M S G F L I
Sbjct: 129 ----EVDR------------NEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.2 bits (124), Expect = 2e-09
Identities = 29/176 (16%), Positives = 52/176 (29%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K + +G GK+ LL + R + I D G
Sbjct: 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES 64
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + R Y+ + + D + R F L++ + +++ I+++GNK D+
Sbjct: 65 FRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDAR-QHSSSNMVIMLIGNKSDL--- 120
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ R G +E + S F A I
Sbjct: 121 ---ESRRDVKREEGEAFAREHG---------LIFMETSAKTACNVEEAFINTAKEI 164
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Score = 51.9 bits (123), Expect = 3e-09
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
K++ +G GK+ L D + L ++ D G
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDY 65
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ +YF + + + + ++ F + + +L +VP L++GNK D+ D
Sbjct: 66 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR 125
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ S R F L I
Sbjct: 126 QVSVEEAKN---------------RADQWNVNYVETSAKTRANVDKVFFDLMREI 165
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.3 bits (124), Expect = 3e-09
Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 24 LLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWR 83
++ G N+GKT LL +L D + + T D GHV+ R
Sbjct: 6 IIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAADYDGSGVTLVDFPGHVKLRYKLS 64
Query: 84 DYF----PAVDAIVFIIDAS-DRSRFPESK---YELDNLLADDALTDVPILILGNKIDIF 135
DY V ++F++D++ D + + ++ ++ + ILI NK ++F
Sbjct: 65 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 124
Query: 136 DAASEDEVR 144
A +++
Sbjct: 125 TARPPSKIK 133
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 3e-09
Identities = 27/176 (15%), Positives = 48/176 (27%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K L +G GK+ LL + + + D G +
Sbjct: 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQER 66
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R V R Y+ + + D + R + L + + ++ I++ GNK D+
Sbjct: 67 FRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLAS-QNIVIILCGNKKDLDAD 125
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ Q + S L + F A I
Sbjct: 126 REVTFLEAS---------------RFAQENELMFLETSALTGENVEEAFVQCARKI 166
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.3 bits (119), Expect = 9e-09
Identities = 28/176 (15%), Positives = 53/176 (30%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K+L +G + GKT L +D + + + I D G +
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQER 66
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ + + D ++ F + + + + +L++GNK D+ D
Sbjct: 67 YRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ-IKTYSWDNAQVLLVGNKCDMEDE 125
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
R ++ E F S F L + I
Sbjct: 126 RVVSSERGR---------------QLADHLGFEFFEASAKDNINVKQTFERLVDVI 166
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 2e-08
Identities = 31/178 (17%), Positives = 54/178 (30%), Gaps = 25/178 (14%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K + +G GK+ LL + E+S I D G +
Sbjct: 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQER 65
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID--IF 135
R V R Y+ + + D + RS + L + + + I+++GNK D
Sbjct: 66 FRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDAR-NLTNPNTVIILIGNKADLEAQ 124
Query: 136 DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ +E + F G + S + + F A I
Sbjct: 125 RDVTYEEAKQFAEENG-----------------LLFLEASAKTGENVEDAFLEAAKKI 165
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (112), Expect = 8e-08
Identities = 30/176 (17%), Positives = 59/176 (33%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K++ +G GKT L++ A + E++ + D G +
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER 66
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + + Y+ + +A++ D + F L + A V +++GNKID+ +
Sbjct: 67 FRSITQSYYRSANALILTYDITCEESFRCLPEWLRE-IEQYASNKVITVLVGNKIDLAER 125
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ R E + + M S + F LA +
Sbjct: 126 REVSQQRAE---------------EFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 9e-08
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 20/175 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPT----LHPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GK+ L L + + + + D G +
Sbjct: 5 KLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEY 64
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ Y + + + ++ F + + + DVP++++GNK D+
Sbjct: 65 SAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAART 124
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E ++ + + S RQG + F L I
Sbjct: 125 VESRQAQ----------------DLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 2e-07
Identities = 28/174 (16%), Positives = 52/174 (29%), Gaps = 5/174 (2%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDL--GGHVQAR 79
K + +G GKT L+ N +++PT+ M D L +
Sbjct: 7 KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDY 66
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139
R + I + E+ + PI+++G K+D+ D
Sbjct: 67 DRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD 126
Query: 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E L ++ ++ CS L ++G F +
Sbjct: 127 TIEKLKEKKLT--PITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 3e-07
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSEELSM----GDIVFTTHDLGGHVQ 77
KL+FLG + GKT L+ D + T+ +M I D G +
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQER 61
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y A V + D ++ + F ++ +D++ + +DV I+++GNK D+ D
Sbjct: 62 FRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVR-TERGSDVIIMLVGNKTDLADK 120
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + S FR +A +
Sbjct: 121 RQVSIEEGE---------------RKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 3e-07
Identities = 28/175 (16%), Positives = 50/175 (28%), Gaps = 18/175 (10%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPT----LHPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ LG GK+ L + + E+ + D G Q
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQF 64
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ Y + + +S F + + + +L DVP++++GNK D+ D
Sbjct: 65 TAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDER 124
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + Q S + F L I
Sbjct: 125 VVGKEQGQ--------------NLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 3e-07
Identities = 29/176 (16%), Positives = 57/176 (32%), Gaps = 9/176 (5%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLH--PTSEELSMGDIVFTTHDLGGHVQAR 79
K + +G GKT L+ + +++PT+ G +
Sbjct: 11 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDY 70
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139
R + + I + ++ E + +VP L++G +ID+ D
Sbjct: 71 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK 130
Query: 140 EDEVRHFFGLYGLTT--GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + G++ +EI +E CS L ++G F I
Sbjct: 131 TLARLNDMKEKPICVEQGQKLA-KEIGACCYVE---CSALTQKGLKTVFDEAIIAI 182
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 6e-07
Identities = 24/178 (13%), Positives = 49/178 (27%), Gaps = 24/178 (13%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTH------DLGGHV 76
K++ +G GKT LL K+ + + V D G
Sbjct: 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 67
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136
+ R V Y+ A++ + D ++++ F + L + +L+ +
Sbjct: 68 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE 127
Query: 137 AA-SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
++ YG + S F +A +
Sbjct: 128 RVVKREDGEKLAKEYG-----------------LPFMETSAKTGLNVDLAFTAIAKEL 168
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.6 bits (104), Expect = 9e-07
Identities = 24/119 (20%), Positives = 44/119 (36%), Gaps = 6/119 (5%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDL------GGHV 76
K++ +G N GKT L R DI + G
Sbjct: 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQER 63
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135
+ + + Y+ V A+VF+ D ++ + F ++ D+P +++GNK D+
Sbjct: 64 FRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.6 bits (104), Expect = 1e-06
Identities = 26/171 (15%), Positives = 54/171 (31%), Gaps = 5/171 (2%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL--HPTSEELSMGDIVFTTHDLGGHVQAR 79
K + +G GKT L+ N ++++PT+ + + G+ +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDY 64
Query: 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS 139
R + + + E+ E P L++G +ID+ D
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD--D 122
Query: 140 EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
+ E + ++ ++ CS L ++G N F
Sbjct: 123 PSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.2 bits (103), Expect = 1e-06
Identities = 29/179 (16%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTLHPTSEELSM----GDIVFTTHDLGGHVQ 77
K++ LG GK+ L+ ++ Q T+ + + D G +
Sbjct: 8 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQER 67
Query: 78 ARRVWRDYFPAVDAIV---FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
R + ++ D + + D+ K E P +ILGNKIDI
Sbjct: 68 FRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDI 127
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ E + + R+ E S F +
Sbjct: 128 SERQVSTE-----------EAQAWC-RDNGDYPYFE---TSAKDATNVAAAFEEAVRRV 171
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-06
Identities = 26/176 (14%), Positives = 52/176 (29%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ LG GK+ L+ + + + L + F D G +
Sbjct: 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQER 67
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ A + + D ++ F +K + L + ++ I + GNK D+ +
Sbjct: 68 YHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQAS-PNIVIALSGNKADLANK 126
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ D + S F +A +
Sbjct: 127 RAVDFQEAQS---------------YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (100), Expect = 3e-06
Identities = 29/176 (16%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPT-----LHPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ LG GK+ ++ ++ A++ ++ + F D G +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ A + + D + F ++++ + L + A D+ I ++GNKID+
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKE-LHEQASKDIIIALVGNKIDMLQE 123
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E +V ++ + + + F S + + F + I
Sbjct: 124 GGERKVAR------------EEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 6e-06
Identities = 20/176 (11%), Positives = 46/176 (26%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K++ LG GKT L+ ++ + + + D G +
Sbjct: 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQER 64
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ + + + D +D F + K + L ++
Sbjct: 65 FHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV---------- 114
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ L + + + S + +G F L +
Sbjct: 115 ------GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 1e-05
Identities = 32/174 (18%), Positives = 58/174 (33%), Gaps = 11/174 (6%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GKT LL + D+ ++PT+ + E+ + D G
Sbjct: 4 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDY 63
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
R+ +P D I+ E+ E +VPI+++GNK D+ +
Sbjct: 64 DRLRPLSYPDTDVILMCFSIDSPDSL-ENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 122
Query: 139 SEDEVRHFFGLYGLTT--GKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLA 190
+ G++ ++ CS + G F
Sbjct: 123 HTRRELAKMKQEPVKPEEGRDMAN----RIGAFGYMECSAKTKDGVREVFEMAT 172
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.6 bits (96), Expect = 1e-05
Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 5/129 (3%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSMGD---IVFTTHDLGGHVQA 78
K++ +G GKT L K+ ++PT+ D I + D G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYY 63
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
V +P DA++ D S +S + + + +L++G K D+
Sbjct: 64 DNVRPLSYPDSDAVLICFDISRPETL-DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122
Query: 139 SEDEVRHFF 147
S
Sbjct: 123 STLVELSNH 131
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 33/176 (18%), Positives = 61/176 (34%), Gaps = 24/176 (13%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
KL+ +G GKT ++ A +HP + G I F D G +
Sbjct: 5 KLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEK 64
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ Y+ + + D + R + +L+ ++PI++ GNK+DI D
Sbjct: 65 FGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLV--RVCENIPIVLCGNKVDIKDR 122
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + F + + ++ + S F F WLA +
Sbjct: 123 KVKAKSIVFH-----------------RKKNLQYYDISAKSNYNFEKPFLWLARKL 161
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 41.2 bits (95), Expect = 2e-05
Identities = 26/176 (14%), Positives = 56/176 (31%), Gaps = 22/176 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K++ +G GK+ ++Q +++ D+ D G +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
+ + Y+ A V + +DR F + + D+P ++ NKID+ D
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK--VVAEVGDIPTALVQNKIDLLDD 121
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ + + + + SV + F++LA
Sbjct: 122 SCIKNEEAE---------------GLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 3e-05
Identities = 29/175 (16%), Positives = 55/175 (31%), Gaps = 19/175 (10%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTLHPTSEELSMGD---IVFTTHDLGGHVQA 78
KL+ +G GK+ +Q +++ + + PT+ + ++ D D G +
Sbjct: 8 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEF 67
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ Y A + + +DR F E +L D P++++GNK D+
Sbjct: 68 GAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR 127
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ F S R F L +
Sbjct: 128 QVPRSEASA---------------FGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Score = 40.6 bits (94), Expect = 5e-05
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Query: 75 HVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
+ARR + +D + ++DA R P S N + +D L + P ++L NK D
Sbjct: 2 MAKARREVTEKLKLIDIVYELVDA----RIPMSS---RNPMIEDILKNKPRIMLLNKADK 54
Query: 135 FDAASEDEVRHFFGLYG 151
DAA + + F G
Sbjct: 55 ADAAVTQQWKEHFENQG 71
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 8e-05
Identities = 32/180 (17%), Positives = 61/180 (33%), Gaps = 22/180 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR---TAQHMPTLHPTSEELSMGDIVFTTHDL---GGHV 76
K++ LG GKT L+ ND+ + ++E+++ T + G
Sbjct: 4 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE 63
Query: 77 QARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDN---LLADDALTDVPILILGNKID 133
+ + + ++ D V + D ++ S F K D ++ P +ILGNKID
Sbjct: 64 RFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKID 123
Query: 134 IFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
++ + + + LF+ S F +A
Sbjct: 124 AEESKKIVSEKSAQ-------------ELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (90), Expect = 9e-05
Identities = 25/178 (14%), Positives = 48/178 (26%), Gaps = 24/178 (13%)
Query: 23 KLLFLGLDNAGKT-FLLQMLKNDRTAQHMPTL---HPTSEELSMGDIVFTTHDLGGHVQA 78
++ G GK+ +L+ +K ++PT+ + D G Q
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQF 63
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKI--DIF 135
+ R A + + + R E K + + + +PI+++GNK
Sbjct: 64 PAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 123
Query: 136 DAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E + S F+ L N
Sbjct: 124 REVQSSEAEALARTWK-----------------CAFMETSAKLNHNVKELFQELLNLE 164
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 1e-04
Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 23/179 (12%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-TAQHMPTL----HPTSEELSMGDIVFTTHDLGGHVQ 77
K++ LG GKT L+ N + + Q+ T+ + + D G +
Sbjct: 4 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER 63
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLL---ADDALTDVPILILGNKIDI 134
+ + ++ D V + D + + F D L + + P ++LG
Sbjct: 64 FQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLG----- 118
Query: 135 FDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
+ L + + F S + F+ +A
Sbjct: 119 ----------NKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.2 bits (82), Expect = 8e-04
Identities = 18/116 (15%), Positives = 39/116 (33%), Gaps = 4/116 (3%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
KL+ +G GK+ L + + E+ + D G +
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEF 65
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134
+ Y D + + +D++ F +L P++++ NK+D+
Sbjct: 66 SAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDL 121
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 9e-04
Identities = 26/176 (14%), Positives = 46/176 (26%), Gaps = 21/176 (11%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR-----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQ 77
K+ LG GK+ ++ D + + + F D G +
Sbjct: 6 KVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLER 65
Query: 78 ARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137
R + Y+ A + + D + F K + L + + I GNK D+ D
Sbjct: 66 FRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGP-PSIVVAIAGNKCDLTDV 124
Query: 138 ASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
E + S F ++ I
Sbjct: 125 REVMERDAK---------------DYADSIHAIFVETSAKNAININELFIEISRRI 165
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (78), Expect = 0.003
Identities = 26/175 (14%), Positives = 49/175 (28%), Gaps = 19/175 (10%)
Query: 23 KLLFLGLDNAGKTFLLQMLKNDR----TAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78
+L+ +G GK+ L + + + D G +
Sbjct: 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEF 66
Query: 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA 138
+ Y + + + +DR F E +L + P++++GNK D+
Sbjct: 67 GAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL---- 122
Query: 139 SEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193
D R G ++ + S R F L I
Sbjct: 123 --DHQRQVTQEEGQQLARQLK---------VTYMEASAKIRMNVDQAFHELVRVI 166
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 194 | |||
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 100.0 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 100.0 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 100.0 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 100.0 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 100.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 100.0 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 100.0 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 100.0 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 100.0 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 100.0 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.98 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.98 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.98 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.97 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.97 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.97 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.97 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.97 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.97 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.97 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.97 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.97 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.96 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.94 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.94 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 99.93 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.92 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.92 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 99.92 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.92 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.92 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.92 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.91 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.91 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.9 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 99.9 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.88 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.88 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.88 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.86 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.84 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.83 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.79 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.78 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.77 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 99.75 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.72 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.61 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.57 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 99.54 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.52 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 99.48 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 99.4 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.36 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.09 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.09 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 99.08 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 99.06 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.74 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.54 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 98.51 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.42 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.39 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.27 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.11 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.95 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.86 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.86 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 97.84 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 97.82 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.82 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 97.81 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 97.8 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 97.8 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.8 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.8 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 97.79 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.77 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 97.76 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 97.74 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.74 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.73 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.71 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 97.69 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.68 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 97.68 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 97.67 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 97.67 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 97.66 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.66 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 97.66 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.64 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.64 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 97.63 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.63 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.62 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.61 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.61 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 97.58 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.58 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.56 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 97.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.55 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.52 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 97.51 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 97.5 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.5 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.48 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.47 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.47 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.43 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.41 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.4 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 97.36 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.35 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.33 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.31 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.3 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.29 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 97.29 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.28 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.26 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.25 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.24 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.19 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.18 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.13 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.12 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 97.11 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.11 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 97.1 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.08 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.07 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 97.04 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.97 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.96 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.94 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 96.92 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.9 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.89 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 96.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.85 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.81 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 96.8 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.77 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.77 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.75 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.75 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 96.69 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.64 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 96.56 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.55 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.49 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.47 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.45 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 96.43 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.4 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.33 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.29 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.28 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.25 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.24 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.22 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 96.16 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.12 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 96.08 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 96.06 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.05 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.03 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 96.03 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.98 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.84 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.81 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 95.78 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.76 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.64 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.6 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.53 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.48 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.45 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.37 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 95.36 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 95.34 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.28 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.09 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.06 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 94.99 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.98 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.87 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 94.86 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 94.81 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.72 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 94.58 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 94.57 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 94.55 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.5 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 94.49 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 94.46 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.24 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 94.03 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 93.82 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 93.82 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.7 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 93.6 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.47 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 93.16 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.89 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 92.41 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 91.95 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 91.17 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 91.12 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 90.55 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.24 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.67 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 89.65 | |
| d2afhe1 | 289 | Nitrogenase iron protein {Azotobacter vinelandii [ | 89.01 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 88.29 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 87.98 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 87.43 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.65 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 85.92 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 85.68 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.49 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.49 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 85.42 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.27 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.34 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 81.98 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 81.97 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.75 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 81.61 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 80.99 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 80.76 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 80.04 |
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=100.00 E-value=1.2e-36 Score=214.87 Aligned_cols=176 Identities=31% Similarity=0.522 Sum_probs=156.3
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
.+|+++++.+-...+.+||+++|.+|||||||++++....+....||.+.........+..+.+||++|++.++..+..+
T Consensus 2 ~~~~~~~~~l~~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 81 (182)
T d1moza_ 2 NIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCY 81 (182)
T ss_dssp HHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGT
T ss_pred hhHHHHHHHHhCCCceEEEEEECCCCCCHHHHHHHHhcCCCCccccccceEEEEEeeCCEEEEEEecccccccchhHHhh
Confidence 46788888887788999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+..+|++++|+|+++..++.....++...+......+.|++|++||+|+.+..+.+++.+.+.... ..
T Consensus 82 ~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~------------~~ 149 (182)
T d1moza_ 82 YADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVE------------LK 149 (182)
T ss_dssp TTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTT------------CC
T ss_pred hccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHH------------Hh
Confidence 999999999999999999999999999988887778899999999999988888888888876544 44
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
...+.+++|||++|+||+++|+||.+.+
T Consensus 150 ~~~~~~~e~SA~~g~gv~e~~~~l~~~i 177 (182)
T d1moza_ 150 DRSWSIVASSAIKGEGITEGLDWLIDVI 177 (182)
T ss_dssp SSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred hCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5568999999999999999999999875
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=100.00 E-value=8.8e-36 Score=209.23 Aligned_cols=165 Identities=33% Similarity=0.602 Sum_probs=149.7
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
...+++||+++|++|||||||++++.+.++..+.++.+.+...+...+..+.+||++|++.+...+..++..+|++++|+
T Consensus 12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~ 91 (176)
T d1fzqa_ 12 APDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVI 91 (176)
T ss_dssp CCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEE
T ss_pred CCCCEEEEEEECCCCCCHHHHHHHHhcCCCCcceeeeeeeEEEeccCCeeEeEeeccccccchhHHHHHhhccceeEEee
Confidence 44678999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++..++.....++..+..+....++|+++++||+|+.+....+++.+.++... ...+.+.+++|||
T Consensus 92 d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~SA 159 (176)
T d1fzqa_ 92 DSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHT------------IRDRVWQIQSCSA 159 (176)
T ss_dssp ETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCT
T ss_pred ccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHH------------HHhcCCEEEEEeC
Confidence 9999999999999999988877777899999999999998888888877776544 4556688999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|+|++++|+||++++
T Consensus 160 ~tg~gv~e~~~~l~~~i 176 (176)
T d1fzqa_ 160 LTGEGVQDGMNWVCKNV 176 (176)
T ss_dssp TTCTTHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHhcC
Confidence 99999999999999875
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=100.00 E-value=9.5e-36 Score=207.02 Aligned_cols=162 Identities=30% Similarity=0.550 Sum_probs=146.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
+.+||+++|++|||||||+++|.+..+..+.||.+.....+..++..+.+||+||++.++..+..++..++++++|+|++
T Consensus 1 k~~ki~ivG~~~~GKTsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 80 (165)
T d1ksha_ 1 RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSA 80 (165)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETT
T ss_pred CcEEEEEECCCCCCHHHHHHHHcCCCCCcccceEeeeeeeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecc
Confidence 46799999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (194)
+..++.....+|...+.+....+.|+++++||+|+.+....++....+.... ...+.+.+++|||++|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~g 148 (165)
T d1ksha_ 81 DRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDS------------IRSHHWRIQGCSAVTG 148 (165)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTC
T ss_pred cchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhh------------hhcCCCEEEEEECCCC
Confidence 9999999999998888777778899999999999988788888877765443 4555688999999999
Q ss_pred CChHHHHHHHhhhc
Q psy2159 180 QGFGNGFRWLANYI 193 (194)
Q Consensus 180 ~~v~~l~~~l~~~i 193 (194)
+||+++|+||.+++
T Consensus 149 ~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 149 EDLLPGIDWLLDDI 162 (165)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999875
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=100.00 E-value=1.2e-35 Score=206.38 Aligned_cols=162 Identities=28% Similarity=0.518 Sum_probs=147.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++||+++|++|||||||++++...++. .+.||.+.+...+..++..+.+||+||+..+...+..++..++++++|+|++
T Consensus 2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~ 81 (164)
T d1zd9a1 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAA 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETT
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeeeeeEEEEEeeccccccccccccccccccchhhcccccc
Confidence 579999999999999999999998886 6889999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (194)
+..++.....++..+++....++.|+++++||.|+.......++.+.+.... .....+.++++||++|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~e~Sa~~g 149 (164)
T d1zd9a1 82 DQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSA------------IQDREICCYSISCKEK 149 (164)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECCTTTC
T ss_pred cccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHH------------HHhCCCEEEEEeCcCC
Confidence 9999999999999998887778999999999999988778888888776544 4456688999999999
Q ss_pred CChHHHHHHHhhhcC
Q psy2159 180 QGFGNGFRWLANYID 194 (194)
Q Consensus 180 ~~v~~l~~~l~~~i~ 194 (194)
+|++++|+||+++++
T Consensus 150 ~gv~e~~~~l~~~~k 164 (164)
T d1zd9a1 150 DNIDITLQWLIQHSK 164 (164)
T ss_dssp TTHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHccC
Confidence 999999999999874
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=100.00 E-value=1.9e-35 Score=207.13 Aligned_cols=165 Identities=30% Similarity=0.558 Sum_probs=150.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+.+||+++|++|||||||++++....+....+|.+............+.+||+||+..++..+..+++.++++++|+|
T Consensus 9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D 88 (173)
T d1e0sa_ 9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 88 (173)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHTTCCCCEEEEEETTEEEEEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCCccceeeeeEEEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEe
Confidence 56789999999999999999999999998888899999988899999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
+++..++.....++...++.....+.|+++++||+|+.+.....++...+.... ...+.+.+++|||+
T Consensus 89 ~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~e~SA~ 156 (173)
T d1e0sa_ 89 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR------------IRDRNWYVQPSCAT 156 (173)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CCSSCEEEEECBTT
T ss_pred cccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHH------------HHhCCCEEEEeeCC
Confidence 999999999999999998877778899999999999998888888888876544 45556889999999
Q ss_pred cCCChHHHHHHHhhhcC
Q psy2159 178 KRQGFGNGFRWLANYID 194 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i~ 194 (194)
+|+||+|+|+||.++++
T Consensus 157 tg~gv~e~~~~l~~~~k 173 (173)
T d1e0sa_ 157 SGDGLYEGLTWLTSNYK 173 (173)
T ss_dssp TTBTHHHHHHHHHHHCC
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 99999999999998874
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-34 Score=198.23 Aligned_cols=155 Identities=20% Similarity=0.234 Sum_probs=118.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEEC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~ 98 (194)
+||+++|.+|||||||++++.+..+....+|.+... ..+..++ ..+.+||++|++++...+..+++++|++++|||+
T Consensus 2 fKi~lvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~ 81 (168)
T d2gjsa1 2 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSV 81 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC---------CEEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEET
T ss_pred eEEEEECCCCcCHHHHHHHHhCCccCCcCCeeeeeecceeeccccccceeeeecccccccceecccchhhhhhhceeccc
Confidence 589999999999999999999988776666655554 4566666 6899999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 99 SDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
+++.++..+..|+..+.......+.|+++|+||+|+.+ ..+.++.....+... ++|++|||
T Consensus 82 t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e~Sa 144 (168)
T d2gjsa1 82 TDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD-----------------CKFIETSA 144 (168)
T ss_dssp TCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------SEEEECBT
T ss_pred cccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcC-----------------CEEEEEeC
Confidence 99999999999999987766667789999999999876 456667766665544 68999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.||+++|++|++.+
T Consensus 145 k~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 145 ALHHNVQALFEGVVRQI 161 (168)
T ss_dssp TTTBSHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=100.00 E-value=1.9e-33 Score=195.97 Aligned_cols=157 Identities=18% Similarity=0.271 Sum_probs=133.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
|-+||+++|.+|||||||++++..+++. .+.||.+... ..+..++ ..+.+||++|+.++...+..+++++|++++|
T Consensus 3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (168)
T d1u8za_ 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccccccccccccccchhhhhhhcccccceeEEE
Confidence 5569999999999999999999998876 6778887764 3455666 6889999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.++..+..|+.++......++.|+++|+||+|+.+ ..+.+++.+..+... +.+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e 145 (168)
T d1u8za_ 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWN-----------------VNYVE 145 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEEE
T ss_pred eeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcC-----------------CeEEE
Confidence 99999999999999999987765567899999999999865 456778777776544 78999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|++.+
T Consensus 146 ~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 146 TSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-33 Score=194.03 Aligned_cols=158 Identities=18% Similarity=0.247 Sum_probs=133.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+++||+++|.+|||||||++++..+++. .+.||.+.... .+..++ ..+.+||++|+..+...+..+++++|++++|
T Consensus 2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 81 (167)
T d1c1ya_ 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEe
Confidence 5689999999999999999999999987 56777766543 333333 7899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.+|+.+..|+..+.+....++.|+++|+||+|+.. ....++.....+.. ..++|++
T Consensus 82 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~----------------~~~~~~e 145 (167)
T d1c1ya_ 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW----------------CNCAFLE 145 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT----------------TSCEEEE
T ss_pred eeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHh----------------CCCEEEE
Confidence 99999999999999999987765667899999999999876 34455555555331 2378999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|+||+++|++|+++|
T Consensus 146 ~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 146 SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHh
Confidence 99999999999999999876
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.3e-34 Score=197.90 Aligned_cols=154 Identities=21% Similarity=0.319 Sum_probs=125.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEE--eCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELS--MGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~--~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|++|||||||++++..+.+. .+.||++.+..... .++ ..+.+||++|+.++...+..+++++|++++|
T Consensus 3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1i2ma_ 3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM 82 (170)
T ss_dssp EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence 468999999999999999999998876 67788887654333 333 7899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
+|+++++||+.+..|+..+.... ++.|+++|+||+|+......++........ .++|++||
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~e~S 143 (170)
T d1i2ma_ 83 FDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-----------------NLQYYDIS 143 (170)
T ss_dssp EETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCTTTSHHHHSSC-----------------SSEEEEEB
T ss_pred cccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhhhHHHHHHHHc-----------------CCEEEEEe
Confidence 99999999999999998887653 689999999999997754444444444332 37899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|.||+++|++|.+.+
T Consensus 144 ak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 144 AKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp TTTTBTTTHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.5e-33 Score=193.39 Aligned_cols=158 Identities=16% Similarity=0.264 Sum_probs=135.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.|.+||+++|.+|||||||++++.++.+. .+.||.+... ..+..++ ..+.+||++|++.+...+..+++++|++++
T Consensus 2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ll 81 (169)
T d1x1ra1 2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLI 81 (169)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEE
Confidence 46789999999999999999999998876 5667776543 3445555 789999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++++|..+..|+..+.+.....+.|+++++||+|+.. ..+.+++.+..+... .+|+
T Consensus 82 v~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~-----------------~~~~ 144 (169)
T d1x1ra1 82 VYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYN-----------------IPYI 144 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHT-----------------CCEE
T ss_pred ecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcC-----------------CEEE
Confidence 999999999999999999987765667899999999999876 466778887776644 6799
Q ss_pred EeccccCC-ChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
+|||+++. ||+++|+.|++.+
T Consensus 145 e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 145 ETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp EEBCSSSCBSHHHHHHHHHHHH
T ss_pred EEcCCCCCcCHHHHHHHHHHHH
Confidence 99999986 9999999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.8e-33 Score=195.31 Aligned_cols=154 Identities=19% Similarity=0.320 Sum_probs=131.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|++|||||||++++.++.+. .+.||.+.+... ...++ ..+.+||++|+.++...+..+++.+|++++|
T Consensus 2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v 81 (164)
T d1z2aa1 2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV 81 (164)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence 368999999999999999999988876 677888876543 44454 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.+++.+..|+.++.... ++.|+++|+||+|+.+ ....+++.+..+... +++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e 142 (164)
T d1z2aa1 82 FSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLK-----------------LRFYR 142 (164)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CEEEE
T ss_pred EeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHHcC-----------------CEEEE
Confidence 99999999999999998886543 5799999999999865 456677777665544 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|.+++
T Consensus 143 ~Sak~g~~v~e~f~~l~~~~ 162 (164)
T d1z2aa1 143 TSVKEDLNVSEVFKYLAEKH 162 (164)
T ss_dssp CBTTTTBSSHHHHHHHHHHH
T ss_pred eccCCCcCHHHHHHHHHHHH
Confidence 99999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.5e-33 Score=195.15 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=136.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+..||+++|++|||||||++++.++.+. .+.||.+... ..+..++ ..+.+||++|..++..++..+++.+|++++|
T Consensus 3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv 82 (167)
T d1xtqa1 3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 82 (167)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEE
T ss_pred cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhh
Confidence 4579999999999999999999988876 5678887764 4566676 6788999999999999889999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
||++++++|..+..|+..+.......+.|+++|+||+|+.. ..+.+++.+..+... .+|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~-----------------~~~~e 145 (167)
T d1xtqa1 83 YSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWN-----------------AAFLE 145 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEE
T ss_pred cccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcC-----------------CEEEE
Confidence 99999999999999999988766667899999999999865 466777777776544 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|+.|++.+
T Consensus 146 ~Sak~~~~v~~~f~~li~~~ 165 (167)
T d1xtqa1 146 SSAKENQTAVDVFRRIILEA 165 (167)
T ss_dssp CCTTCHHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHh
Confidence 99999999999999998765
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.3e-33 Score=194.15 Aligned_cols=158 Identities=20% Similarity=0.280 Sum_probs=134.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc-eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT-SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.+.+||+++|.+|||||||++++..+++. .+.+|.... ...+..++ ..+.+||++|++++...+..+++++|++++
T Consensus 4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~ 83 (173)
T d2fn4a1 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL 83 (173)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred CCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence 46689999999999999999999998877 455554433 34566676 678889999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|++++.+|..+..|+..+.+.....+.|+++|+||+|+.. ....++.....+... .+|+
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~ 146 (173)
T d2fn4a1 84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHH-----------------VAYF 146 (173)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcC-----------------CEEE
Confidence 999999999999999999887765567899999999999865 455677777776544 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.||+++|++|++.+
T Consensus 147 e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 147 EASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-33 Score=193.69 Aligned_cols=157 Identities=17% Similarity=0.209 Sum_probs=131.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.+||+++|.+|||||||++++.++.+. .+.||.+.... ....++ ..+.+||++|++.+...+..+++.+|++++|
T Consensus 1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 80 (171)
T d2erxa1 1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 80 (171)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence 3579999999999999999999998876 67788886643 344555 5788899999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC-CCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLAD-DALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~-~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
||+++++++..+..|+..+.+. ....+.|+++|+||+|+.+ ..+.++..+..+... ++|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~-----------------~~~~ 143 (171)
T d2erxa1 81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-----------------CAFM 143 (171)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcC-----------------CeEE
Confidence 9999999999999998887653 3346789999999999865 456677777766544 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.||+++|+.|++.+
T Consensus 144 e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 144 ETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ECBTTTTBSHHHHHHHHHHTC
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.6e-33 Score=194.28 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=133.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+++||+++|.+|||||||++++.++++. .+.+|.+... .....++ ..+.+||++|++.+...+..+++++|++++|
T Consensus 2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv 81 (167)
T d1kaoa_ 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeee
Confidence 5789999999999999999999998876 5667766543 3344555 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.+|.....|+..+......++.|+++|+||+|+.. ....++.....+... .++++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e 144 (167)
T d1kaoa_ 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWG-----------------CPFME 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SCEEE
T ss_pred eeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcC-----------------CeEEE
Confidence 99999999999999999887766667899999999999865 455566666555433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|+++|
T Consensus 145 ~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 145 TSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ECTTCHHHHHHHHHHHHHHH
T ss_pred ECCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.6e-32 Score=191.07 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=134.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+++||+++|.+|||||||++++..+++. .+.+|.+..... ...++ ..+.+||++|++++...+..+++.+|+++
T Consensus 2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i 81 (167)
T d1z0ja1 2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 81 (167)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence 35789999999999999999999999887 567777776543 33343 57889999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|++++++|..+..|+...... ...+.|+++|+||+|+.+ ....++..+..+... ++|
T Consensus 82 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~ 143 (167)
T d1z0ja1 82 IVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIH-----------------AIF 143 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEeeechhhhhhhHHHhhhhhhhc-cCCcceEEEecccchhccccchhHHHHHHHHHHcC-----------------CEE
Confidence 999999999999999988777554 447899999999999865 466777777776544 789
Q ss_pred EEeccccCCChHHHHHHHhhhcC
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
++|||++|.||+++|.+|.++|+
T Consensus 144 ~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 144 VETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp EECBTTTTBSHHHHHHHHHHHCC
T ss_pred EEEecCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999874
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2e-32 Score=190.87 Aligned_cols=156 Identities=21% Similarity=0.305 Sum_probs=129.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
.-+||+++|++|||||||++++.++++. .+.++.+.+. ..+...+ ..+.+||+||++++..++..+++++|++|+
T Consensus 4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il 83 (169)
T d3raba_ 4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 83 (169)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence 3479999999999999999999998876 5566666554 3444444 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|+++++++.....|+...... .....|+++++||+|+.. ..+.++.....+... .+++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~ 145 (169)
T d3raba_ 84 MYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLG-----------------FEFF 145 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-CCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEE
T ss_pred EEECccchhhhhhhhhhhhhhcc-cCCcceEEEEEeecccccccccchhhhHHHHHHcC-----------------CEEE
Confidence 99999999999998888766443 456789999999999876 456677766665544 6899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.||+++|++|++.+
T Consensus 146 e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 146 EASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-32 Score=190.94 Aligned_cols=157 Identities=17% Similarity=0.269 Sum_probs=131.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+.+||+++|.+|||||||++++..+.+. .+.||.+... ..+..++ ..+.+||++|+.++...+..+++.+|++++|
T Consensus 4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv 83 (171)
T d2erya1 4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV 83 (171)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence 3479999999999999999999998876 5677776543 4455666 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|++++.+|..+..|+..+.........|+++|+||+|+.. ....++..+..+... .+|++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~e 146 (171)
T d2erya1 84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLK-----------------VTYME 146 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcC-----------------CEEEE
Confidence 99999999999999998887766667899999999999865 467778887776654 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|+.|++.+
T Consensus 147 ~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 147 ASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp CBTTTTBSHHHHHHHHHHHH
T ss_pred EcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998865
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=100.00 E-value=1.5e-31 Score=188.34 Aligned_cols=185 Identities=63% Similarity=1.093 Sum_probs=156.1
Q ss_pred HHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcC
Q psy2159 10 EVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAV 89 (194)
Q Consensus 10 ~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~ 89 (194)
++++.++..+++.||+++|++|||||||++++.+..+....++.+.+...+.+++..+..||++++......+..+....
T Consensus 2 ~~~~~~~~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (186)
T d1f6ba_ 2 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 81 (186)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred chHHhccccCCCCEEEEECCCCCCHHHHHHHHhCCCCcceecccccceeEEEecccccccccccchhhhhhHHhhhhccc
Confidence 57788899999999999999999999999999999998888999999999999999999999999999988888999999
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
+++++++|.++...+......+..........+.|+++++||.|++.....+++.+.++..................+.+
T Consensus 82 ~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (186)
T d1f6ba_ 82 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 161 (186)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred ceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCC
Confidence 99999999999988888888888887776778899999999999999888999988887766555555555555667778
Q ss_pred EEEEeccccCCChHHHHHHHhhhcC
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.+++|||++|+|++|+|+||.++++
T Consensus 162 ~~~~~SA~tg~Gi~e~~~~l~~~i~ 186 (186)
T d1f6ba_ 162 EVFMCSVLKRQGYGEGFRWMAQYID 186 (186)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTCC
T ss_pred EEEEEeCCCCCCHHHHHHHHHHhhC
Confidence 9999999999999999999999874
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-33 Score=197.17 Aligned_cols=173 Identities=20% Similarity=0.228 Sum_probs=127.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
....+||+++|.+|||||||++++..+.+. .+.||.+.... .+..++ ..+.+||++|++.+...+..+++++|+++
T Consensus 6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i 85 (185)
T d2atxa1 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 85 (185)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence 356689999999999999999999999876 67788766543 334444 78999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|||+++++||.+...|+...++.. .++.|+++|+||+|+.+.....+.....+.......++...+...+ ...|++
T Consensus 86 lv~d~t~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~--~~~~~E 162 (185)
T d2atxa1 86 ICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG--ACCYVE 162 (185)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT--CSCEEE
T ss_pred eccccchHHHHHHHHHHHHHHHHhc-CCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcC--CCEEEE
Confidence 9999999999999887777776643 4689999999999987632221111111110000001111111111 257999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|+.+++++
T Consensus 163 ~SAk~~~gv~e~F~~li~~i 182 (185)
T d2atxa1 163 CSALTQKGLKTVFDEAIIAI 182 (185)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred ecCCCCcCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.5e-32 Score=188.70 Aligned_cols=155 Identities=23% Similarity=0.271 Sum_probs=131.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|.+|||||||++++..+++. .+.++.+.... ....++ ..+.+||++|++++...+..++..+|++++|+
T Consensus 1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~ 80 (164)
T d1yzqa1 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY 80 (164)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence 48999999999999999999998876 56777666544 333444 78999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|.+++.++..+..|+..+... ..++.|+++|+||+|+.+ ....++.....+... ..|++|
T Consensus 81 d~~~~~s~~~i~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 142 (164)
T d1yzqa1 81 DITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELN-----------------VMFIET 142 (164)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEEC
T ss_pred ccccccchhhhHhhHHHHHHh-cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcC-----------------CEEEEe
Confidence 999999999999999887654 236799999999999865 556667777776544 689999
Q ss_pred ccccCCChHHHHHHHhhhcC
Q psy2159 175 SVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i~ 194 (194)
||++|.||+++|++|.++|+
T Consensus 143 SAk~g~~v~e~f~~i~~~l~ 162 (164)
T d1yzqa1 143 SAKAGYNVKQLFRRVAAALP 162 (164)
T ss_dssp CTTTCTTHHHHHHHHHHHSC
T ss_pred cCCCCcCHHHHHHHHHHhhC
Confidence 99999999999999999874
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.9e-33 Score=195.89 Aligned_cols=170 Identities=16% Similarity=0.230 Sum_probs=125.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+.||+++|.+|||||||++++..+.+. .+.||.+... .....++ ..+.+||++|++.+...+..+++++|++++||
T Consensus 2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (177)
T d1kmqa_ 2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCF 81 (177)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccccccccccceeeeccccCccchhcccchhhcccchhhhhhc
Confidence 358999999999999999999999887 5677776543 2344444 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEecc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSV 176 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 176 (194)
|+++++||.....||...+.+. .++.|+++|+||+|+.+.....+.............++...+... ...+|++|||
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~--~~~~~~E~SA 158 (177)
T d1kmqa_ 82 SIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRI--GAFGYMECSA 158 (177)
T ss_dssp ETTCHHHHHHHHHTHHHHHHHH-STTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHT--TCSEEEECCT
T ss_pred ccchhHHHHHHHHHHHHHHHHh-CCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHc--CCcEEEEecC
Confidence 9999999999988887776653 467999999999999753222111111111110111111111112 2267999999
Q ss_pred ccCCChHHHHHHHhhhc
Q psy2159 177 LKRQGFGNGFRWLANYI 193 (194)
Q Consensus 177 ~~~~~v~~l~~~l~~~i 193 (194)
++|.||+++|+.+.+.+
T Consensus 159 kt~~gi~e~F~~i~~~~ 175 (177)
T d1kmqa_ 159 KTKDGVREVFEMATRAA 175 (177)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999999998753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-32 Score=190.23 Aligned_cols=157 Identities=18% Similarity=0.315 Sum_probs=133.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
+++||+++|++|||||||++++.++.+. .+.+|.+.... .+...+ ..+.+||++|++.+...+..+++.++++++|
T Consensus 2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv 81 (166)
T d1ctqa_ 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEE
T ss_pred CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCccccccchhhhhhccccccee
Confidence 4679999999999999999999999887 46677766543 233343 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
+|++++.+|.....|+..+.......+.|+++|+||+|+.. ....+++.+..+... +++++|
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----------------~~~~e~ 144 (166)
T d1ctqa_ 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYG-----------------IPYIET 144 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHT-----------------CCEEEC
T ss_pred ecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhC-----------------CeEEEE
Confidence 99999999999999999887766567899999999999876 455667766665544 679999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|+||+++|++|++.+
T Consensus 145 Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 145 SAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=3.4e-32 Score=190.05 Aligned_cols=155 Identities=19% Similarity=0.243 Sum_probs=129.7
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|.+|||||||++++..+.+. .+.++.+.+ ...+..++ ..+.+||+||++++...++.++++++++++|
T Consensus 5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v 84 (171)
T d2ew1a1 5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT 84 (171)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence 479999999999999999999998876 455555554 44566666 5789999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|.+++.++.....|+..+... .....|+++|+||+|+.+ ....++.....+... .++++
T Consensus 85 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~-----------------~~~~~ 146 (171)
T d2ew1a1 85 YDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQD-----------------MYYLE 146 (171)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHT-----------------CCEEE
T ss_pred eecccchhhhhhhhhhhhhccc-ccccccEEEEEeecccccccchhhhHHHHHHHhCC-----------------CEEEE
Confidence 9999999999999998887653 335789999999999865 455667776665544 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|.+++
T Consensus 147 ~SAktg~gV~e~f~~l~~~l 166 (171)
T d2ew1a1 147 TSAKESDNVEKLFLDLACRL 166 (171)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EccCCCCCHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.8e-32 Score=189.99 Aligned_cols=155 Identities=21% Similarity=0.258 Sum_probs=129.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
++||+++|++|||||||++++..+.+. .+.||++..+. .+..++ ..+.+||++|+..+. ....+++++|++++|+
T Consensus 2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~ 80 (168)
T d2atva1 2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVY 80 (168)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeecccccccc-cchhhhcccccceeec
Confidence 579999999999999999999999876 67888887653 334455 689999999998764 4566788999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|+++++++..+..|+.........++.|+++|+||+|+.+ .++.++..+..+... ++|++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~-----------------~~~~e~ 143 (168)
T d2atva1 81 DITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELA-----------------CAFYEC 143 (168)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHT-----------------SEEEEC
T ss_pred ccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhC-----------------CeEEEE
Confidence 9999999999988776555544557899999999999865 467788877776654 789999
Q ss_pred ccccCC-ChHHHHHHHhhhc
Q psy2159 175 SVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~-~v~~l~~~l~~~i 193 (194)
||++|. ||+++|+.|++.+
T Consensus 144 Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 144 SACTGEGNITEIFYELCREV 163 (168)
T ss_dssp CTTTCTTCHHHHHHHHHHHH
T ss_pred ccccCCcCHHHHHHHHHHHH
Confidence 999998 5999999998865
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.98 E-value=3.2e-31 Score=182.57 Aligned_cols=160 Identities=33% Similarity=0.593 Sum_probs=140.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDR 101 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~ 101 (194)
+||+++|++|||||||++++.+.++....++..............+.+||++|...+...+..++..++++++++|..++
T Consensus 1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~ 80 (160)
T d1r8sa_ 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (160)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecCh
Confidence 58999999999999999999999887666666666677777889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCC
Q psy2159 102 SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQG 181 (194)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 181 (194)
.++.....++.++.........|+++++||.|+.+.....++........ .....+.+++|||++|+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SAktg~g 148 (160)
T d1r8sa_ 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS------------LRHRNWYIQATCATSGDG 148 (160)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG------------CSSCCEEEEECBTTTTBT
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHH------------HhhCCCEEEEeECCCCCC
Confidence 99999999999998877778899999999999988777777776655433 344558899999999999
Q ss_pred hHHHHHHHhhhc
Q psy2159 182 FGNGFRWLANYI 193 (194)
Q Consensus 182 v~~l~~~l~~~i 193 (194)
|+++|+||.++|
T Consensus 149 i~e~~~~l~~~l 160 (160)
T d1r8sa_ 149 LYEGLDWLSNQL 160 (160)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=1.1e-31 Score=186.60 Aligned_cols=155 Identities=19% Similarity=0.261 Sum_probs=129.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|.+|||||||++++.+.++. .+.++..... .....++ ..+.+||++|++++...+..+++.+|++++|
T Consensus 4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv 83 (166)
T d1z0fa1 4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 83 (166)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence 479999999999999999999998877 4555555544 4455565 5899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++.+++.....|+..+... .....|+++++||+|+.. ....++.....+... +++++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e 145 (166)
T d1z0fa1 84 YDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENG-----------------LLFLE 145 (166)
T ss_dssp EETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred eccCchHHHHHHHHHHHHHHhh-ccccceEEEEcccccchhhcccHHHHHHHHHHHcC-----------------CEEEE
Confidence 9999999999999988877543 446789999999999855 455667777765544 78999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|++.|
T Consensus 146 ~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 146 ASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999865
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=2.3e-32 Score=190.19 Aligned_cols=155 Identities=22% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|.+|||||||++++..+.+. .+.||.+.... ....++ ..+.+||++|+.++...+..+++++|++++|
T Consensus 3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v 82 (167)
T d1z08a1 3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV 82 (167)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence 469999999999999999999998887 57778777654 344444 7899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++||..+..|+..+... .....|+++++||+|+.. .++.+++.+..+... .++++
T Consensus 83 ~d~~~~~Sf~~~~~~~~~~~~~-~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~-----------------~~~~e 144 (167)
T d1z08a1 83 YDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVG-----------------AKHYH 144 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred EeCCchhHHHhhhhhhhhcccc-cccccceeeeccccccccccccchHHHHHHHHHcC-----------------CeEEE
Confidence 9999999999999988876543 235689999999999865 567788888776654 78999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|.+.+
T Consensus 145 ~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 145 TSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp EBTTTTBSHHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHHH
Confidence 99999999999999999865
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=6e-32 Score=188.60 Aligned_cols=157 Identities=18% Similarity=0.243 Sum_probs=132.8
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+||+++|.+|||||||++++..+++. .+.+|.+..... ...++ ..+.+||++|++++...+..+++++|+++
T Consensus 4 ~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 83 (170)
T d1r2qa_ 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred eeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEE
Confidence 35679999999999999999999998876 567777776543 33343 68999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|+|.++..++.....|+..+... ..++.|+++|+||+|+.. ..+.++.....+... ++|
T Consensus 84 lv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~-----------------~~~ 145 (170)
T d1r2qa_ 84 VVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNS-----------------LLF 145 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEE
T ss_pred EEeccchhhHHHHHHHHhhhhhhc-cCCCceEEeecccccccccccccHHHHHHHHHhcC-----------------CEE
Confidence 999999999999999988887653 346799999999999865 456666776665433 689
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||++|.||+++|++|++.|
T Consensus 146 ~e~SAk~g~~V~e~f~~l~~~i 167 (170)
T d1r2qa_ 146 METSAKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp EECCTTTCTTHHHHHHHHHHTS
T ss_pred EEeeCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999876
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.97 E-value=1.7e-30 Score=181.95 Aligned_cols=165 Identities=26% Similarity=0.553 Sum_probs=144.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
..+++||+++|.+|||||||++++.+.++....++.+.........+..+.+||+++.+.....+..++..++++++++|
T Consensus 12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d 91 (177)
T d1zj6a1 12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 91 (177)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHhcCCCCccccccceeEEEEeecceEEEEeccccccccccchhhhhccceeeeeecc
Confidence 37889999999999999999999999999988888888888999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccc
Q psy2159 98 ASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVL 177 (194)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 177 (194)
.++..++.....++............|+++++||+|++.....+++.+.+.... ...+.+++++|||+
T Consensus 92 ~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~Sa~ 159 (177)
T d1zj6a1 92 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTS------------IKDHQWHIQACCAL 159 (177)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CCSSCEEEEECBTT
T ss_pred cccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHh------------hHhcCCEEEEEeCC
Confidence 999999999888888777777778899999999999988888888888776544 44566899999999
Q ss_pred cCCChHHHHHHHhhhcC
Q psy2159 178 KRQGFGNGFRWLANYID 194 (194)
Q Consensus 178 ~~~~v~~l~~~l~~~i~ 194 (194)
+|+|++++|+||.++++
T Consensus 160 tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 160 TGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp TTBTHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 99999999999999874
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5e-32 Score=191.60 Aligned_cols=156 Identities=21% Similarity=0.319 Sum_probs=130.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeC------------CEEEEEEEcCCCccchhhHhhh
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMG------------DIVFTTHDLGGHVQARRVWRDY 85 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~------------~~~~~~~d~~g~~~~~~~~~~~ 85 (194)
-+||+++|++|||||||++++.++++. .+.+|.+... ..+.++ ...+.+||++|++++..++..+
T Consensus 5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~ 84 (186)
T d2f7sa1 5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF 84 (186)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence 479999999999999999999998876 4444444432 233222 2579999999999999999999
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
++++|++++|||++++.++..+..|+..+..+......|+++|+||+|+.. ....+++.+..+...
T Consensus 85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~------------ 152 (186)
T d2f7sa1 85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYG------------ 152 (186)
T ss_dssp HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT------------
T ss_pred HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcC------------
Confidence 999999999999999999999999988887766677889999999999865 566777777776544
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++|||++|.||+++|++|.+.+
T Consensus 153 -----~~~~e~Sak~~~~i~e~f~~l~~~i 177 (186)
T d2f7sa1 153 -----IPYFETSAATGQNVEKAVETLLDLI 177 (186)
T ss_dssp -----CCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 6799999999999999999999864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.6e-31 Score=185.77 Aligned_cols=158 Identities=21% Similarity=0.287 Sum_probs=134.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.+.+||+++|.+|||||||++++.++++. .+.++.+.. ...+.+++ ..+.+||+||++++...+..++..+|+++
T Consensus 5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii 84 (177)
T d1x3sa1 5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI 84 (177)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999998876 455555554 34456665 67999999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.++.....|+..+.........|+++++||.|... ....++..+..+... +.++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~-----------------~~~~ 147 (177)
T d1x3sa1 85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHS-----------------MLFI 147 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCC-----------------CEEE
Confidence 9999999999999999999997776667899999999999866 566677777766544 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|+||+++|++|++++
T Consensus 148 e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 148 EASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999998864
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2e-31 Score=186.61 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=128.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
..+||+++|.+|||||||++++..+++. .+.+|.+..... +..++ ..+.+||+||++++...+..+++.+|++++
T Consensus 4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 83 (174)
T d2bmea1 4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL 83 (174)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence 3479999999999999999999988876 566676666443 33343 689999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|+|.++++++..+..|+..+.... .++.|+++++||+|+.. ....++......... ++++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~ 145 (174)
T d2bmea1 84 VYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQENE-----------------LMFL 145 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTT-----------------CEEE
T ss_pred EEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHhCC-----------------CEEE
Confidence 999999999999999999886643 46899999999999755 344455555554433 7899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|+|++++|+++++++
T Consensus 146 e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 146 ETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=6.1e-31 Score=183.42 Aligned_cols=156 Identities=21% Similarity=0.326 Sum_probs=132.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.+||+++|.+|||||||++++..+++. .+.||.+.+. ..+..++ ..+.+||++|++++...+..++..+|++++|
T Consensus 3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv 82 (170)
T d1ek0a_ 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence 469999999999999999999999876 5777887654 4556665 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-----AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
||++++.++.....|+...... .....|+++++||+|+.+ ....++..+..+... ++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~-----------------~~ 144 (170)
T d1ek0a_ 83 YDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG-----------------LL 144 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EeCCcccchhhhhhhhhhhccc-cccccceeeeecccccccccchhhhhHHHHHHHHHHcC-----------------CE
Confidence 9999999999999988776554 335789999999999753 456677777776544 78
Q ss_pred EEEeccccCCChHHHHHHHhhhcC
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
|++|||++|.||+++|++|.++|.
T Consensus 145 ~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 145 FFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHTTSC
T ss_pred EEEecCCCCcCHHHHHHHHHHHhc
Confidence 999999999999999999999874
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3.9e-31 Score=185.28 Aligned_cols=155 Identities=19% Similarity=0.307 Sum_probs=125.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
-+||+++|.+|||||||++++.++++. .+.++.+.. ...+..++ ..+.+||++|++++...+..+++.+|++++|
T Consensus 4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v 83 (175)
T d2f9la1 4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 83 (175)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence 469999999999999999999998876 455555544 45556666 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|.+++.||.....|+..+.++. .++.|+++|+||+|+.+ ....+.......... .++++
T Consensus 84 ~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~-----------------~~~~e 145 (175)
T d2f9la1 84 YDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-----------------LSFIE 145 (175)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CEEEE
T ss_pred EECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcccC-----------------ceEEE
Confidence 99999999999999998887653 36789999999999876 234344444443322 68999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.|++++|+++++.+
T Consensus 146 ~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 146 TSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCCCcCHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.2e-32 Score=191.53 Aligned_cols=172 Identities=16% Similarity=0.250 Sum_probs=127.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIV 93 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii 93 (194)
.++.+||+++|.+|||||||+++|..+.+. .+.||.+... ..+..++ ..+.+||++|++.+...+..+++++|+++
T Consensus 2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i 81 (183)
T d1mh1a_ 2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL 81 (183)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence 467889999999999999999999999876 6778877654 3455555 67899999999999999999999999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH-HHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASE-DEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
+|+|++++.+|+.+..+|...+.. ...+.|+++|+||+|+.+.... ++....... .....++.... .......|+
T Consensus 82 lv~d~~~~~sf~~i~~~~~~~~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~a--~~~~~~~~~ 157 (183)
T d1mh1a_ 82 ICFSLVSPASFENVRAKWYPEVRH-HCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT-PITYPQGLAMA--KEIGAVKYL 157 (183)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH-HSTTSCEEEEEECHHHHTCHHHHHHHHHTTCC-CCCHHHHHHHH--HHTTCSEEE
T ss_pred eeeccchHHHHHHHHHHHHHHHHH-hCCCCcEEEEeecccchhhhhhhhhhhhcccc-chhhHHHHHHH--HHcCCceEE
Confidence 999999999999998766666554 3467899999999998653111 111111100 00000000001 112236899
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.||+++|+.|++.+
T Consensus 158 E~SAk~~~~V~e~F~~l~~~i 178 (183)
T d1mh1a_ 158 ECSALTQRGLKTVFDEAIRAV 178 (183)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EcCCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.8e-31 Score=183.95 Aligned_cols=157 Identities=20% Similarity=0.322 Sum_probs=123.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcceeE--EEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPTSEE--LSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~~~~--~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
...+||+++|+++||||||++++..+++. .+.++.+.+... +..++ ..+.+|||+|++++...+..+++++|++
T Consensus 4 d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~ 83 (170)
T d2g6ba1 4 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 83 (170)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred ceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCcee
Confidence 34579999999999999999999998875 345566666544 44555 5889999999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|+++++++.....++....... ....|+++++||+|+.. ..+.+++....+... ++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~-----------------~~ 145 (170)
T d2g6ba1 84 LLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYG-----------------LP 145 (170)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHT-----------------CC
T ss_pred EEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHHHcC-----------------CE
Confidence 99999999999999999988876653 35789999999999877 455667776665544 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||++|.||+++|++|++.|
T Consensus 146 ~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 146 FMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEeCCCCcCHHHHHHHHHHHc
Confidence 99999999999999999999876
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=7.7e-31 Score=186.67 Aligned_cols=155 Identities=23% Similarity=0.341 Sum_probs=130.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
-+||+++|++|||||||++++....+. .+.+|.+.... .+..++ ..+.+||+||++++..++..+++.++++++|
T Consensus 6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v 85 (194)
T d2bcgy1 6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV 85 (194)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 479999999999999999999998876 67778777654 455555 6899999999999999999999999999999
Q ss_pred EECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEE
Q psy2159 96 IDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFM 173 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (194)
+|+++++++.....++..+... ...+.|+++++||+|+.+ ....++......... ..+++
T Consensus 86 ~d~t~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~-----------------~~~~e 147 (194)
T d2bcgy1 86 YDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANK-----------------MPFLE 147 (194)
T ss_dssp EETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTT-----------------CCEEE
T ss_pred EeCcchhhhhhHhhhhhhhhhc-ccCCceEEEEEeccccccccchhHHHHhhhhhccC-----------------cceEE
Confidence 9999999999988887777543 457899999999999876 455555666654433 67999
Q ss_pred eccccCCChHHHHHHHhhhc
Q psy2159 174 CSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 174 ~Sa~~~~~v~~l~~~l~~~i 193 (194)
|||++|.||+++|++|++.+
T Consensus 148 ~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 148 TSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHH
T ss_pred EecCcCccHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8e-31 Score=183.33 Aligned_cols=154 Identities=20% Similarity=0.278 Sum_probs=125.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|++|||||||++++.++++. .+.++..... ......+ ..+.+||++|+..+...+..++..+|++++|+
T Consensus 4 ~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~ 83 (173)
T d2a5ja1 4 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 83 (173)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEE
Confidence 68999999999999999999998876 4444444443 3334444 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEe
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMC 174 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (194)
|++++.+|.....|+..+... ...++|+++|+||+|+.. ....++.....+... ++|++|
T Consensus 84 d~~~~~sf~~~~~~~~~~~~~-~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~-----------------~~~~e~ 145 (173)
T d2a5ja1 84 DITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHG-----------------LIFMET 145 (173)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEEEEE
T ss_pred eecChHHHHhHHHHHHHHHHh-CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcC-----------------CEEEEe
Confidence 999999999999999888664 346789999999999755 455666666665544 789999
Q ss_pred ccccCCChHHHHHHHhhhc
Q psy2159 175 SVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 175 Sa~~~~~v~~l~~~l~~~i 193 (194)
||++|.||+++|++|.+.+
T Consensus 146 Sa~tg~~V~e~f~~i~~~i 164 (173)
T d2a5ja1 146 SAKTACNVEEAFINTAKEI 164 (173)
T ss_dssp CTTTCTTHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=4.3e-31 Score=187.56 Aligned_cols=155 Identities=19% Similarity=0.301 Sum_probs=126.0
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.+||+++|++|||||||++++..+++. .+.||.+.... ....++ ..+.+||++|++++...+..+++++|++++||
T Consensus 3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 82 (191)
T d2ngra_ 3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 82 (191)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeeccc
Confidence 579999999999999999999999976 67788876543 334444 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--------------CCHHHHHhhhcccCccCCCccCccc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--------------ASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--------------~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
|+++++||+++..||...... ..++.|+++|+||+|+.+. +..++..++....
T Consensus 83 d~~~~~Sf~~~~~~~~~~~~~-~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------ 149 (191)
T d2ngra_ 83 SVVSPSSFENVKEKWVPEITH-HCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL------------ 149 (191)
T ss_dssp ETTCHHHHHHHHHTHHHHHHH-HCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT------------
T ss_pred ccchHHHHHHHHHHHHHHHhh-cCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc------------
Confidence 999999999998877776654 3467999999999998643 3334443333221
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....|++|||++|.||+++|+.+.+.
T Consensus 150 ----~~~~~~e~SAk~~~~V~e~f~~l~~~ 175 (191)
T d2ngra_ 150 ----KAVKYVECSALTQKGLKNVFDEAILA 175 (191)
T ss_dssp ----TCSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred ----CCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 22579999999999999999998864
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.5e-30 Score=182.24 Aligned_cols=157 Identities=23% Similarity=0.312 Sum_probs=114.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEEe--CC---EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELSM--GD---IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~~--~~---~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
-+||+++|++|||||||++++.+.++. .+.+|.+........ .+ ..+.+||++|++++...+..+++.+|++++
T Consensus 2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il 81 (175)
T d1ky3a_ 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL 81 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence 368999999999999999999988876 566666665443332 22 678999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCCC---CCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 95 IIDASDRSRFPESKYELDNLLAD---DALTDVPILILGNKIDIFD---AASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~~---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
|+|++++.+|.....|+.++... ....+.|+++++||+|+.+ ..+.++..+..+.. ..
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~----------------~~ 145 (175)
T d1ky3a_ 82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSL----------------GD 145 (175)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHT----------------TS
T ss_pred EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHc----------------CC
Confidence 99999999999999998887653 3345789999999999865 24455555554332 22
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.+|++|||++|.||+++|++|++.+
T Consensus 146 ~~~~e~SA~~g~gv~e~f~~l~~~~ 170 (175)
T d1ky3a_ 146 IPLFLTSAKNAINVDTAFEEIARSA 170 (175)
T ss_dssp CCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 5689999999999999999998753
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.9e-31 Score=185.63 Aligned_cols=158 Identities=24% Similarity=0.334 Sum_probs=102.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAI 92 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~i 92 (194)
+.+-+||+++|.+|||||||++++.++.+. .+.+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~ 82 (173)
T d2fu5c1 3 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 82 (173)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred ccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEE
Confidence 344579999999999999999999988875 455565544 45666666 5788899999999999999999999999
Q ss_pred EEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 93 VFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 93 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|+|++++.++..+..++..+... ...+.|+++++||.|+.. ....++......... .+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~-----------------~~ 144 (173)
T d2fu5c1 83 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYG-----------------IK 144 (173)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHT-----------------CE
T ss_pred EEEEECCChhhHHHHHHHHHHhhhh-ccCCceEEEEEecccchhhcccHHHHHHHHHHhcC-----------------CE
Confidence 9999999999999999888887543 457799999999999876 444455555554433 78
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++|||++|+||+++|++|++.|
T Consensus 145 ~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 145 FMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp EEECCC---CCHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999865
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.2e-29 Score=172.33 Aligned_cols=165 Identities=59% Similarity=0.992 Sum_probs=143.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS 102 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 102 (194)
||+++|++|||||||++++.+.++..+.||.+.+.......+....+||++|.......+..++..++++++++|.++..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 81 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE 81 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCeeeceeeEeEEEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCCh
Q psy2159 103 RFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGF 182 (194)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 182 (194)
++.....++..........+.|+++++||.|+.......++.+.+......... .....+.+.+++|||++|+|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~SA~tg~Gv 156 (166)
T d2qtvb1 82 RFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQ-----RIEGQRPVEVFMCSVVMRNGY 156 (166)
T ss_dssp GHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC--------CCSSCCEEEEEEBTTTTBSH
T ss_pred hhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHH-----hhcccCCCEEEEeeCCCCCCH
Confidence 999988888888887778889999999999999888888888777554311111 112344578999999999999
Q ss_pred HHHHHHHhhh
Q psy2159 183 GNGFRWLANY 192 (194)
Q Consensus 183 ~~l~~~l~~~ 192 (194)
+|+|+||.+.
T Consensus 157 ~e~~~~l~~~ 166 (166)
T d2qtvb1 157 LEAFQWLSQY 166 (166)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhCC
Confidence 9999999863
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-29 Score=176.78 Aligned_cols=158 Identities=18% Similarity=0.274 Sum_probs=127.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVF 94 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~ 94 (194)
+-+||+++|.+|||||||++++..+++. .+.+|.+... .....++ ..+.+||++|+.+....+..++..+|++++
T Consensus 5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~ 84 (174)
T d1wmsa_ 5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL 84 (174)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence 3469999999999999999999998876 5666666553 3444555 678999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHh---CCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 95 IIDASDRSRFPESKYELDNLLA---DDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~---~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
++|.+++.++..+..|+.++.. .....+.|+++|+||+|+.+ ....+++.++.... ...+
T Consensus 85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~----------------~~~~ 148 (174)
T d1wmsa_ 85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDN----------------GDYP 148 (174)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHT----------------TCCC
T ss_pred EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHc----------------CCCe
Confidence 9999999999999988876654 34456799999999999876 56777777776542 1257
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
|++|||++|.||+++|++|++.+
T Consensus 149 ~~e~Sak~~~gI~e~f~~l~~~i 171 (174)
T d1wmsa_ 149 YFETSAKDATNVAAAFEEAVRRV 171 (174)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=4.8e-30 Score=177.95 Aligned_cols=152 Identities=22% Similarity=0.306 Sum_probs=126.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCccee--EEEeCC--EEEEEEEcCCCccchh-hHhhhhhcCCEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSE--ELSMGD--IVFTTHDLGGHVQARR-VWRDYFPAVDAIVF 94 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~--~~~~~~--~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii~ 94 (194)
-+||+++|.+|||||||++++..+++. .+.+|.+.... ...... ..+.+||++|...... .++.+++++|++++
T Consensus 2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il 81 (165)
T d1z06a1 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (165)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence 468999999999999999999998876 55666665543 333443 6899999999887665 56778999999999
Q ss_pred EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 95 IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 95 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|||++++++|..+..|+.++.++....+.|++||+||+|+.+ ..+.+++.+..+... ++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-----------------~~~~ 144 (165)
T d1z06a1 82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHS-----------------MPLF 144 (165)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTT-----------------CCEE
T ss_pred EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCC-----------------CEEE
Confidence 999999999999999999988876677899999999999865 467777877776544 6799
Q ss_pred Eecccc---CCChHHHHHHH
Q psy2159 173 MCSVLK---RQGFGNGFRWL 189 (194)
Q Consensus 173 ~~Sa~~---~~~v~~l~~~l 189 (194)
+|||++ +.||+++|++|
T Consensus 145 e~SAkt~~~~~~V~e~F~~l 164 (165)
T d1z06a1 145 ETSAKNPNDNDHVEAIFMTL 164 (165)
T ss_dssp ECCSSSGGGGSCHHHHHHHH
T ss_pred EEecccCCcCcCHHHHHHHh
Confidence 999987 56999999987
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2.4e-30 Score=179.71 Aligned_cols=154 Identities=20% Similarity=0.314 Sum_probs=124.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce--eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS--EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|.+|||||||++++...++. .+.||.+.+. ..+..++ ..+.+||+||++.+..++..+++++|++++|+
T Consensus 3 ~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~ 82 (166)
T d1g16a_ 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVY 82 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEE
Confidence 68999999999999999999999876 5667777654 4555555 67888999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEec
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCS 175 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 175 (194)
|.+++.++..+..++...... .....|+++++||.|+.+ ....++..+...... +++++||
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~-~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~S 144 (166)
T d1g16a_ 83 DITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAKELG-----------------IPFIESS 144 (166)
T ss_dssp ETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHT-----------------CCEEECB
T ss_pred ECCCccCHHHHHhhhhhhhcc-ccCcceeeeecchhhhhhhhhhHHHHHHHHHhcC-----------------CeEEEEC
Confidence 999999999988887777654 346789999999999877 455666666665543 7899999
Q ss_pred cccCCChHHHHHHHhhhc
Q psy2159 176 VLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 176 a~~~~~v~~l~~~l~~~i 193 (194)
|++|+||+++|++|++.+
T Consensus 145 a~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 145 AKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp TTTTBSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999998865
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=8.8e-30 Score=177.85 Aligned_cols=156 Identities=16% Similarity=0.229 Sum_probs=122.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCCCcc--eeEEEeCC--EEEEEEEcCCCccch-hhHhhhhhcCCEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTLHPT--SEELSMGD--IVFTTHDLGGHVQAR-RVWRDYFPAVDAIV 93 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~~~~--~~~~~~~~--~~~~~~d~~g~~~~~-~~~~~~~~~~d~ii 93 (194)
.+||+++|.+|||||||++++.+..+. ...+|.+.. ...+..++ ..+.+||+++..... -++..+++++|+++
T Consensus 3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~~~~~~~~~~~~~i 82 (172)
T d2g3ya1 3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYL 82 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEE
T ss_pred EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccccccccccccceee
Confidence 469999999999999999999987654 344555544 34556666 567889987543221 25567789999999
Q ss_pred EEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--CCCHHHHHhhhcccCccCCCccCcccccCCcceEE
Q psy2159 94 FIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMEL 171 (194)
Q Consensus 94 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (194)
+|||++++.++..+..|+..+......++.|+++|+||+|+.+ ....++..+..+... .+|
T Consensus 83 lvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~-----------------~~~ 145 (172)
T d2g3ya1 83 IVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD-----------------CKF 145 (172)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT-----------------CEE
T ss_pred eeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcC-----------------CeE
Confidence 9999999999999999999887766667899999999999865 466777666655544 789
Q ss_pred EEeccccCCChHHHHHHHhhhc
Q psy2159 172 FMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 172 ~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++|||++|.||+++|++|++++
T Consensus 146 ~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 146 IETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp EECBTTTTBSHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.97 E-value=5.3e-30 Score=180.82 Aligned_cols=156 Identities=19% Similarity=0.286 Sum_probs=127.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcceeEEE--eCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTSEELS--MGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~~~~~--~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
+||+++|.+|||||||++++.++++. .+.||.+.+..... ..+ ..+.+||++|+.+....+..++..+|++++|+
T Consensus 3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~ 82 (184)
T d1vg8a_ 3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF 82 (184)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence 58999999999999999999998876 67788887654433 333 68999999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhC---CCCCCCcEEEEeeCCCCCC-CCCHHHHHhhhcccCccCCCccCcccccCCcceEEE
Q psy2159 97 DASDRSRFPESKYELDNLLAD---DALTDVPILILGNKIDIFD-AASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELF 172 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~D~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (194)
|.++..++..+..|+..+... ....+.|+++|+||+|+.+ ....++....... ....+++
T Consensus 83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~----------------~~~~~~~ 146 (184)
T d1vg8a_ 83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYS----------------KNNIPYF 146 (184)
T ss_dssp ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHH----------------TTSCCEE
T ss_pred cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHH----------------hcCCeEE
Confidence 999999999999988777653 2335689999999999876 4455555544422 1236799
Q ss_pred EeccccCCChHHHHHHHhhhc
Q psy2159 173 MCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 173 ~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+|||++|.||+++|++|++.+
T Consensus 147 e~Sak~~~gI~e~f~~l~~~i 167 (184)
T d1vg8a_ 147 ETSAKEAINVEQAFQTIARNA 167 (184)
T ss_dssp ECBTTTTBSHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHH
Confidence 999999999999999998753
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=3.7e-30 Score=180.87 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=125.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC-ccccCCCcce-eEEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEEE
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA-QHMPTLHPTS-EELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFII 96 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~ 96 (194)
.+||+++|.+|||||||++++..+++. .+.||.+... ..+..++ ..+.+||++|++.+...+..+++.+|++++||
T Consensus 2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 81 (179)
T d1m7ba_ 2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICF 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccccccceEEeeccccccccccccccccchhhhhhhhheee
Confidence 468999999999999999999999987 5677776543 3444444 78899999999999999999999999999999
Q ss_pred ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC--------------CCCHHHHHhhhcccCccCCCccCccc
Q psy2159 97 DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD--------------AASEDEVRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 97 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~--------------~~~~~e~~~~~~~~~~~~~~~~~~~~ 162 (194)
|+++++||.....+|...+.. ..++.|+++|+||+|+.. .++.++.....+..
T Consensus 82 d~~~~~Sf~~~~~~~~~~~~~-~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~------------ 148 (179)
T d1m7ba_ 82 DISRPETLDSVLKKWKGEIQE-FCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI------------ 148 (179)
T ss_dssp ETTCHHHHHHHHHTHHHHHHH-HCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH------------
T ss_pred ecccCCCHHHHHHHHHHHHhc-cCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHh------------
Confidence 999999999999888777654 236899999999999854 24444555444331
Q ss_pred ccCCcceEEEEeccccCC-ChHHHHHHHhhhc
Q psy2159 163 ILQMRPMELFMCSVLKRQ-GFGNGFRWLANYI 193 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~i 193 (194)
....|++|||++|. +++++|+.+.+.+
T Consensus 149 ----~~~~y~E~SAk~~~n~i~~~F~~~~~~~ 176 (179)
T d1m7ba_ 149 ----GAATYIECSALQSENSVRDIFHVATLAC 176 (179)
T ss_dssp ----TCSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred ----CCCeEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 12579999999998 5999999988754
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.96 E-value=2e-28 Score=169.65 Aligned_cols=162 Identities=31% Similarity=0.567 Sum_probs=144.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
+++||+++|.+|||||||++++.+.++..+.+|.+........++..+.+||.++...........+...+++++++|..
T Consensus 4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (169)
T d1upta_ 4 REMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSC 83 (169)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETT
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCCcceecccceeeeeeccCceEEEEeeccccccccccchhhhhhhhhhhhhhhhh
Confidence 56899999999999999999999999998888988888888999999999999999999998888899999999999999
Q ss_pred CCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccC
Q psy2159 100 DRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKR 179 (194)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 179 (194)
+..++.....++............|+++++||.|+.......++........ .....+++++|||++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~------------~~~~~~~~~~~SA~~g 151 (169)
T d1upta_ 84 DRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPA------------LKDRKWQIFKTSATKG 151 (169)
T ss_dssp CCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGG------------CTTSCEEEEECCTTTC
T ss_pred hcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHH------------HhcCCCEEEEEeCCCC
Confidence 9999999988888887776667899999999999998877778777665433 4455689999999999
Q ss_pred CChHHHHHHHhhhc
Q psy2159 180 QGFGNGFRWLANYI 193 (194)
Q Consensus 180 ~~v~~l~~~l~~~i 193 (194)
.||+++|++|.+.+
T Consensus 152 ~gv~e~~~~l~~~l 165 (169)
T d1upta_ 152 TGLDEAMEWLVETL 165 (169)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999876
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.1e-29 Score=173.92 Aligned_cols=154 Identities=14% Similarity=0.167 Sum_probs=122.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCccee-EEEeCC--EEEEEEEcCCCccchhhHhhhhhcCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSE-ELSMGD--IVFTTHDLGGHVQARRVWRDYFPAVDAIVFI 95 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v 95 (194)
.|.+||+++|.+|||||||++++.+..+....+|...... .+..++ ..+.+||++|+.++ .+++.+|++++|
T Consensus 3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilV 77 (175)
T d2bmja1 3 IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFV 77 (175)
T ss_dssp CCEEEEEEECCTTTTHHHHHHHHHHSCCCCCCCSSCEEEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHhCCCCCcCCccceeEEEEeecCceEEEEEEeeccccccc-----ccccccceeEEE
Confidence 5689999999999999999999999999877777666543 466677 67999999998864 367889999999
Q ss_pred EECCCCCChHHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCC----CCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 96 IDASDRSRFPESKYELDNLLAD--DALTDVPILILGNKIDIFD----AASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 96 ~d~~~~~~~~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
||+++++||..+..|+..+... ....+.|+++|+||.|+.. ..+.++...+... ....
T Consensus 78 fd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~----------------~~~~ 141 (175)
T d2bmja1 78 FSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCAD----------------MKRC 141 (175)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHT----------------STTE
T ss_pred eecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHH----------------hCCC
Confidence 9999999999998887776532 3346689999999988744 3445566555422 1237
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.|++|||++|.||+++|..+++.+
T Consensus 142 ~~~e~SAk~~~~v~~~F~~l~~~i 165 (175)
T d2bmja1 142 SYYETCATYGLNVDRVFQEVAQKV 165 (175)
T ss_dssp EEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred eEEEeCCCCCcCHHHHHHHHHHHH
Confidence 899999999999999999998754
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=6.4e-26 Score=158.85 Aligned_cols=153 Identities=22% Similarity=0.232 Sum_probs=110.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccch--------hhHhhhhhc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQAR--------RVWRDYFPA 88 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~--------~~~~~~~~~ 88 (194)
...|+++|++|||||||+|++++.+... ...|...........+..+.+||+||..... .....++..
T Consensus 5 ~~~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ 84 (178)
T d1wf3a1 5 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 84 (178)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccc
Confidence 3478999999999999999999886542 3334455566677888999999999975432 223345678
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|++++|+|++++. .....++...+.. ...++|+++|+||+|+.+. .++..+.+... ...
T Consensus 85 ad~il~v~D~~~~~--~~~~~~i~~~l~~-~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~---------------~~~ 144 (178)
T d1wf3a1 85 VNAVVWVVDLRHPP--TPEDELVARALKP-LVGKVPILLVGNKLDAAKY--PEEAMKAYHEL---------------LPE 144 (178)
T ss_dssp CSEEEEEEETTSCC--CHHHHHHHHHHGG-GTTTSCEEEEEECGGGCSS--HHHHHHHHHHT---------------STT
T ss_pred ccceeeeechhhhh--cccccchhhheec-cccchhhhhhhcccccccC--HHHHHHHHHhh---------------ccc
Confidence 99999999998854 3444555555443 2356899999999998663 33433333221 122
Q ss_pred eEEEEeccccCCChHHHHHHHhhhc
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..++++||++|.|+++++++|.+.+
T Consensus 145 ~~~~~iSA~~~~gi~~L~~~i~~~l 169 (178)
T d1wf3a1 145 AEPRMLSALDERQVAELKADLLALM 169 (178)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred CceEEEecCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999999876
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.94 E-value=1.8e-26 Score=164.09 Aligned_cols=173 Identities=18% Similarity=0.316 Sum_probs=128.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
+++||+++|.+|||||||++++....+. +.||+|.....+......+.+||++|++.+...+..++++++++++++|.+
T Consensus 1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~-~~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (200)
T d2bcjq2 1 RELKLLLLGTGESGKSTFIKQMRIIHGS-GVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 79 (200)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTSS-CCCCCSCEEEEEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGG
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCCCC-CCceeeEEEEEEeccceeeeeccccccccccccccccccccceeeEeeecc
Confidence 4689999999999999999999988774 679999999999999999999999999999999999999999999999997
Q ss_pred CCCC----------hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC-CCHHHHHhhhcccCccCCCc----------c
Q psy2159 100 DRSR----------FPESKYELDNLLADDALTDVPILILGNKIDIFDA-ASEDEVRHFFGLYGLTTGKE----------F 158 (194)
Q Consensus 100 ~~~~----------~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~-~~~~e~~~~~~~~~~~~~~~----------~ 158 (194)
+..+ +.+....|..++......+.|+++++||+|+... .................... .
T Consensus 80 ~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f 159 (200)
T d2bcjq2 80 EYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMF 159 (200)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHH
T ss_pred chhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHH
Confidence 7432 4455667777777777789999999999997430 00000111110000000000 0
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
........+.+.+++|||++|+||+++|+.+.+.|
T Consensus 160 ~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I 194 (200)
T d2bcjq2 160 VDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 194 (200)
T ss_dssp HTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred HHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHH
Confidence 00011234557889999999999999999987754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.93 E-value=4.9e-26 Score=161.19 Aligned_cols=164 Identities=21% Similarity=0.320 Sum_probs=123.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
++.||+++|..|||||||++++.... .||.+.....+......+.+||++|++.+...+..+++.++++++|+|++
T Consensus 1 ~e~KivllG~~~vGKTsl~~r~~~~~----~~t~~~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~ 76 (195)
T d1svsa1 1 REVKLLLLGAGESGKSTIVKQMKIIH----EAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALS 76 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH----SCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCC----CCCccEEEEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeec
Confidence 46799999999999999999998653 45667777888899999999999999999999999999999999999998
Q ss_pred CCCChH----------HHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-----------------CCCHHHHHhhhcccCc
Q psy2159 100 DRSRFP----------ESKYELDNLLADDALTDVPILILGNKIDIFD-----------------AASEDEVRHFFGLYGL 152 (194)
Q Consensus 100 ~~~~~~----------~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-----------------~~~~~e~~~~~~~~~~ 152 (194)
+..++. +....|..++......+.|+++++||+|+.. ....++.........
T Consensus 77 ~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f- 155 (195)
T d1svsa1 77 DYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQF- 155 (195)
T ss_dssp GGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHH-
T ss_pred ccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHH-
Confidence 866553 4445677777777778899999999999632 111122111111100
Q ss_pred cCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.........+.+.+++|||++|+||+++|+.+.+.|
T Consensus 156 -----~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~i 191 (195)
T d1svsa1 156 -----EDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVI 191 (195)
T ss_dssp -----HTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHH
Confidence 000111334567888999999999999999987754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.92 E-value=1.6e-25 Score=156.90 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=111.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcccc----------CCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP----------TLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFP 87 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 87 (194)
..+.++|.++|++++|||||+|+|.+.......+ |.......+..++..+.++|+||+.++.......+.
T Consensus 2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~ 81 (179)
T d1wb1a4 2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD 81 (179)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence 4567799999999999999999999754321111 122233456667889999999999998888888899
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
.+|++++|+|+++... .+....+..+ .. .++|+++|+||+|+......+......+... .......
T Consensus 82 ~~d~~ilv~d~~~g~~-~~~~~~~~~~-~~---~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~---------~~~~~~~ 147 (179)
T d1wb1a4 82 IIDLALIVVDAKEGPK-TQTGEHMLIL-DH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL---------QSTHNLK 147 (179)
T ss_dssp SCCEEEEEEETTTCSC-HHHHHHHHHH-HH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH---------HHSSSGG
T ss_pred hccccccccccccccc-hhhhhhhhhh-hh---cCCcceeccccccccCHHHHHHHHHHHHHHH---------HHhhcCC
Confidence 9999999999988543 3333333333 22 5789999999999876322211111111110 0002334
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|+|++++++.|.+.+
T Consensus 148 ~~~iv~iSA~~g~gi~eL~~~I~~~l 173 (179)
T d1wb1a4 148 NSSIIPISAKTGFGVDELKNLIITTL 173 (179)
T ss_dssp GCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CCeEEEEEccCCcCHHHHHHHHHhcC
Confidence 46899999999999999999998865
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.5e-24 Score=149.22 Aligned_cols=148 Identities=19% Similarity=0.197 Sum_probs=109.5
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh--------hHhhhhhcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR--------VWRDYFPAV 89 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~--------~~~~~~~~~ 89 (194)
++|+++|++|||||||+|++++.+... ...+.......+...+..+.++|+||..+... ....++..+
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQA 81 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHhc
Confidence 689999999999999999999877542 22233334556778889999999999664322 233457889
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++++|..+..++.....+...+... ..+.|+++|+||+|+.++... + ......
T Consensus 82 d~~i~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~iilv~NK~Dl~~~~~~------~----------------~~~~~~ 137 (161)
T d2gj8a1 82 DRVLFMVDGTTTDAVDPAEIWPEFIARL--PAKLPITVVRNKADITGETLG------M----------------SEVNGH 137 (161)
T ss_dssp SEEEEEEETTTCCCCSHHHHCHHHHHHS--CTTCCEEEEEECHHHHCCCCE------E----------------EEETTE
T ss_pred cccceeeccccccchhhhhhhhhhhhhc--ccccceeeccchhhhhhhHHH------H----------------HHhCCC
Confidence 9999999999887776666544444332 247899999999997542110 0 112337
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
+++++||++|.|+++++++|.+.|
T Consensus 138 ~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 138 ALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhC
Confidence 899999999999999999999875
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=6.3e-26 Score=161.41 Aligned_cols=166 Identities=22% Similarity=0.396 Sum_probs=118.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~ 99 (194)
+.+||+++|.+|||||||++++. ....+.||+|.....+...+..+.+||++|++.+...+..++++++++++++|.+
T Consensus 1 r~iKivllG~~~vGKTsll~r~~--f~~~~~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~ 78 (200)
T d1zcba2 1 RLVKILLLGAGESGKSTFLKQMR--IIHGQDPTKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSS 78 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH--HHHSCCCCSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETT
T ss_pred CeEEEEEECCCCCCHHHHHHHHh--cCCCCCCeeeeEEEEEeeeeeeeeeecccceeeecccccccccccceeEEEEEcC
Confidence 45799999999999999999993 2236788999999999999999999999999999999999999999999999998
Q ss_pred CCCC----------hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC------------------CCHHHHHhhhcccC
Q psy2159 100 DRSR----------FPESKYELDNLLADDALTDVPILILGNKIDIFDA------------------ASEDEVRHFFGLYG 151 (194)
Q Consensus 100 ~~~~----------~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~------------------~~~~e~~~~~~~~~ 151 (194)
+..+ +.....++..++......+.|+++++||+|+.++ ...+...+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f 158 (200)
T d1zcba2 79 EFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECF 158 (200)
T ss_dssp CTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHH
T ss_pred CcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHH
Confidence 8544 4455667778887777789999999999997430 11122222211110
Q ss_pred ccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 152 LTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ........+.+.++++||+++.||+++|+.+.+.|
T Consensus 159 ~------~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i 194 (200)
T d1zcba2 159 R------GKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 194 (200)
T ss_dssp H------TTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred H------HhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence 0 00111233445677899999999999999987643
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=7.7e-25 Score=152.30 Aligned_cols=149 Identities=17% Similarity=0.224 Sum_probs=99.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCcc---------chhhHhhhhhcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQ---------ARRVWRDYFPAV 89 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~---------~~~~~~~~~~~~ 89 (194)
.|+++|++|||||||+|+|++.+.. ....|.......+...+..+..||++|... ........+..+
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a 81 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 81 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence 5889999999999999999987654 244455556677888889999999999432 122334456789
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
|++++++|.+..... ....++..+ .. .++|+++|+||+|+.++...+...+..+ ....
T Consensus 82 d~i~~~~~~~~~~~~-~~~~~~~~l-~~---~~~pviiv~NK~Dl~~~~~~~~~~~~~~-----------------~~~~ 139 (171)
T d1mkya1 82 DLVLFVVDGKRGITK-EDESLADFL-RK---STVDTILVANKAENLREFEREVKPELYS-----------------LGFG 139 (171)
T ss_dssp SEEEEEEETTTCCCH-HHHHHHHHH-HH---HTCCEEEEEESCCSHHHHHHHTHHHHGG-----------------GSSC
T ss_pred cEEEEeecccccccc-ccccccccc-cc---ccccccccchhhhhhhhhhhHHHHHHHh-----------------cCCC
Confidence 999999998775433 223333333 32 4689999999999864322211111111 1224
Q ss_pred EEEEeccccCCChHHHHHHHhhhc
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.++++||++|.|+++++++|.+.+
T Consensus 140 ~~i~iSAk~g~gid~L~~~i~~~l 163 (171)
T d1mkya1 140 EPIPVSAEHNINLDTMLETIIKKL 163 (171)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEEEecCCCCCHHHHHHHHHHhC
Confidence 568999999999999999999876
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=2.7e-24 Score=147.76 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=110.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccc---------hhhHhhhhhc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQA---------RRVWRDYFPA 88 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------~~~~~~~~~~ 88 (194)
+||+++|.+|||||||+|++++.+... ...|.......+..++..+.+||+||.... .......+..
T Consensus 1 ikI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 80 (160)
T d1xzpa2 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEK 80 (160)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHh
Confidence 489999999999999999999876432 333445556778889999999999994321 1223334678
Q ss_pred CCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcc
Q psy2159 89 VDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRP 168 (194)
Q Consensus 89 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (194)
+|++++|+|.+++...... ..+..+ ...++++++||+|+.+....+++...+.. .
T Consensus 81 ad~ii~v~d~~~~~~~~~~-~~~~~~------~~~~~i~~~~k~d~~~~~~~~~~~~~~~~------------------~ 135 (160)
T d1xzpa2 81 ADIVLFVLDASSPLDEEDR-KILERI------KNKRYLVVINKVDVVEKINEEEIKNKLGT------------------D 135 (160)
T ss_dssp CSEEEEEEETTSCCCHHHH-HHHHHH------TTSSEEEEEEECSSCCCCCHHHHHHHHTC------------------S
T ss_pred CCEEEEEEeCCCCcchhhh-hhhhhc------ccccceeeeeeccccchhhhHHHHHHhCC------------------C
Confidence 9999999999987654433 222222 45789999999999988888887776643 1
Q ss_pred eEEEEeccccCCChHHHHHHHhhh
Q psy2159 169 MELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 169 ~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
.+++++||++|+|+++|+++|.++
T Consensus 136 ~~~~~vSA~~g~gi~~L~~~I~ke 159 (160)
T d1xzpa2 136 RHMVKISALKGEGLEKLEESIYRE 159 (160)
T ss_dssp TTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=1.1e-23 Score=150.63 Aligned_cols=169 Identities=24% Similarity=0.266 Sum_probs=120.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeC---CEEEEEEEcCCCccch-hhHhhhhhcCCEEEEEEEC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMG---DIVFTTHDLGGHVQAR-RVWRDYFPAVDAIVFIIDA 98 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~d~~g~~~~~-~~~~~~~~~~d~ii~v~d~ 98 (194)
+|+++|++|||||||++++.+.++....+|.+.+...+.+. +..+.+||++|++.++ ..+..++..++++++|+|+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~ 81 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDS 81 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCeeEEEEEEEEeeeeeeeeeeeeccccccccchhhhhhhhhccccceEEEc
Confidence 68999999999999999999999888888888888777763 4789999999999875 4667778999999999999
Q ss_pred CCCCCh-HHHHHHHHHHHhC--CCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC----------------------cc
Q psy2159 99 SDRSRF-PESKYELDNLLAD--DALTDVPILILGNKIDIFDAASEDEVRHFFGLYG----------------------LT 153 (194)
Q Consensus 99 ~~~~~~-~~~~~~~~~~~~~--~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~----------------------~~ 153 (194)
++..++ .....++..++.. ....+.|++|++||+|++.+.+.+++.+.++... ..
T Consensus 82 ~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (207)
T d2fh5b1 82 AAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQL 161 (207)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCS
T ss_pred ccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhccccccceeehhhhhhhhh
Confidence 985543 3444555555432 2235689999999999998888887766653311 00
Q ss_pred CCCccCcccccCCcceEEEEeccccCCC------hHHHHHHHhh
Q psy2159 154 TGKEFTPREILQMRPMELFMCSVLKRQG------FGNGFRWLAN 191 (194)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~------v~~l~~~l~~ 191 (194)
...+..+........+.++++|+++|.+ ++++-+||.+
T Consensus 162 ~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~ 205 (207)
T d2fh5b1 162 GKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAK 205 (207)
T ss_dssp SCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHH
T ss_pred cccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHH
Confidence 0111111122223456799999999886 7888888764
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=8.5e-25 Score=153.28 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=104.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEe-CCEEEEEEEcCCCccch-------hhHhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSM-GDIVFTTHDLGGHVQAR-------RVWRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~d~~g~~~~~-------~~~~~~~~~~d~ 91 (194)
+|+++|.+|||||||+|+|++.... ....|...+...... .+..+.+||+||..... ......+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 5899999999999999999987653 234455555554444 45789999999954321 223345678999
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHh-CCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcceE
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLA-DDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPME 170 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (194)
+++++|..... +.....+...+.. .....++|+++|+||+|+......+++.+.+.. ...+
T Consensus 83 ~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~-----------------~~~~ 144 (180)
T d1udxa2 83 LLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAR-----------------EGLA 144 (180)
T ss_dssp EEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHT-----------------TTSC
T ss_pred hhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHh-----------------cCCe
Confidence 99999986632 2332222222111 111245799999999999764444444444433 2367
Q ss_pred EEEeccccCCChHHHHHHHhhhc
Q psy2159 171 LFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 171 ~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
++++||++|+|+++|++.|.+.+
T Consensus 145 ~~~iSA~tg~gid~L~~~i~~~l 167 (180)
T d1udxa2 145 VLPVSALTGAGLPALKEALHALV 167 (180)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997754
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=4e-24 Score=150.49 Aligned_cols=159 Identities=18% Similarity=0.164 Sum_probs=109.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCC----ccccCCCcceeEEEeCCEEEEEEEcCCCccch------------hh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTA----QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR------------RV 81 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~------------~~ 81 (194)
...+++|+++|++|||||||+|++++.+.. ....|.......+..++..+.++|+||..... ..
T Consensus 5 ~~~~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~ 84 (186)
T d1mkya2 5 ITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 84 (186)
T ss_dssp CCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence 346789999999999999999999987643 23334444566788899999999999975322 23
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC--CCHHHHHhhhcccCccCCCccC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA--ASEDEVRHFFGLYGLTTGKEFT 159 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~--~~~~e~~~~~~~~~~~~~~~~~ 159 (194)
....++.+|++++|+|++... ......+..++.. .+.|+|+++||+|+... ...+++.+.+....
T Consensus 85 ~~~~~~~~dvii~v~d~~~~~--~~~~~~~~~~~~~---~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~-------- 151 (186)
T d1mkya2 85 VVDSIEKADVVVIVLDATQGI--TRQDQRMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKL-------- 151 (186)
T ss_dssp HHHHHHHCSEEEEEEETTTCC--CHHHHHHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHC--------
T ss_pred HHHHHhcCCEEEEeecccccc--hhhHHHHHHHHHH---cCCceeeeccchhhhcchhhhhhhHHHHHHHHh--------
Confidence 444567899999999998753 2333333333333 57899999999998653 23445554444322
Q ss_pred cccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 160 PREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 160 ~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
......+++++||++|.|+++|+++|.+.+
T Consensus 152 ----~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~ 181 (186)
T d1mkya2 152 ----YFIDYSPLIFTSADKGWNIDRMIDAMNLAY 181 (186)
T ss_dssp ----GGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----cccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 223346799999999999999999997754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.90 E-value=2.7e-24 Score=150.98 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=96.5
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccc---------------hhhHhhhhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQA---------------RRVWRDYFP 87 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~---------------~~~~~~~~~ 87 (194)
.|+++|++|||||||+|++++.+.. +.++.+.+.....+....+.++|+||.... ........+
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~-~~~~~g~T~~~~~~~~~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVR-RGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAK 80 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCS-SSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCEeecccccccccceecccCCceeccccccccccccchhhhhhhhhccc
Confidence 5899999999999999999987653 333333333333333334678999995211 112233456
Q ss_pred cCCEEEEEEECCCCCC---------hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCcc
Q psy2159 88 AVDAIVFIIDASDRSR---------FPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEF 158 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~---------~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~ 158 (194)
.+|++++|+|...... .......+.+.+.. .++|+++|+||+|+... .++....+....
T Consensus 81 ~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~------- 148 (184)
T d2cxxa1 81 NIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKN--VQEVINFLAEKF------- 148 (184)
T ss_dssp GCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSC--HHHHHHHHHHHH-------
T ss_pred ccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cCCCEEEEEeeeehhhh--HHHHHHHHHHHh-------
Confidence 7999999999864211 11111122222222 47899999999998653 223222221110
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..........++++||++|.|+++|+++|.+.+
T Consensus 149 --~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l 181 (184)
T d2cxxa1 149 --EVPLSEIDKVFIPISAKFGDNIERLKNRIFEVI 181 (184)
T ss_dssp --TCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --cccccccCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 000222334589999999999999999999876
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=2.8e-24 Score=155.35 Aligned_cols=172 Identities=17% Similarity=0.295 Sum_probs=126.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEE
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIID 97 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d 97 (194)
++...||+++|.+|||||||++++... +..||+|.....+..++..+.+||++|++..+..|..++.+++++++|+|
T Consensus 3 ~k~~~KilllG~~~vGKTsll~~~~~~---~~~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d 79 (221)
T d1azta2 3 YRATHRLLLLGAGESGKSTIVKQMRIL---HVVLTSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVA 79 (221)
T ss_dssp HHHSEEEEEECSTTSSHHHHHHHHHHH---HCCCCCSCEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEE
T ss_pred chhcCEEEEECCCCCCHHHHHHHHhcC---CcCCCCCeEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEE
Confidence 345679999999999999999999755 45689999999999999999999999999999999999999999999999
Q ss_pred CCCC----------CChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCC---CHHHHHhhhcccCccCC-------Cc
Q psy2159 98 ASDR----------SRFPESKYELDNLLADDALTDVPILILGNKIDIFDAA---SEDEVRHFFGLYGLTTG-------KE 157 (194)
Q Consensus 98 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~---~~~e~~~~~~~~~~~~~-------~~ 157 (194)
.++. .+..+....|..++......+.|++|++||+|+.++. ....+..++........ .+
T Consensus 80 ~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g 159 (221)
T d1azta2 80 SSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPG 159 (221)
T ss_dssp TTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTT
T ss_pred ccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCC
Confidence 8752 2345566778888888888899999999999985410 00112222211110000 00
Q ss_pred c-------------Cc-----ccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 158 F-------------TP-----REILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 158 ~-------------~~-----~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
. .+ ......+.+.+..+||+++.+|+.+|+.+.+.
T Consensus 160 ~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~ni~~vf~~v~d~ 212 (221)
T d1azta2 160 EDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDI 212 (221)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHHHHHHHHHTTHHH
T ss_pred CchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccHHHHHHHHHHHHH
Confidence 0 00 01112234567789999999999999876553
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.89 E-value=4.1e-23 Score=146.43 Aligned_cols=159 Identities=17% Similarity=0.138 Sum_probs=108.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcce-----------------------eEEEeCCEEEEE
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTS-----------------------EELSMGDIVFTT 69 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~-----------------------~~~~~~~~~~~~ 69 (194)
+++.+|+++|+.++|||||+++|.+..... ...|..... .....+...+.+
T Consensus 3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T d1kk1a3 3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence 567899999999999999999998743221 111111111 011122356999
Q ss_pred EEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC----HHHHHh
Q psy2159 70 HDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS----EDEVRH 145 (194)
Q Consensus 70 ~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~----~~e~~~ 145 (194)
+|+||+..+.......+..+|++++|+|+.+........+.+..+... ...+++++.||+|+.+... .+++.+
T Consensus 83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~ 159 (195)
T d1kk1a3 83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKE 159 (195)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHH
Confidence 999999999988888888999999999998864334444443333222 2346888999999876322 222333
Q ss_pred hhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 146 FFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
.++. .....++++++||++|+|+++|++.+.+.++
T Consensus 160 ~~~~--------------~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 160 FIEG--------------TVAENAPIIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp HHTT--------------STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred Hhcc--------------ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence 3332 2233478999999999999999999998764
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1.6e-23 Score=147.33 Aligned_cols=154 Identities=21% Similarity=0.287 Sum_probs=104.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeC-CEEEEEEEcCCCccc----hhh---HhhhhhcCCE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMG-DIVFTTHDLGGHVQA----RRV---WRDYFPAVDA 91 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~d~~g~~~~----~~~---~~~~~~~~d~ 91 (194)
+|+++|++|||||||+|+|++.+.. ....|...+.....+. +..+.+||+||..+. ... ....+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 6899999999999999999987653 3455667777777664 468999999996321 111 2233566899
Q ss_pred EEEEEECCCCCChHHHHH----HHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCc
Q psy2159 92 IVFIIDASDRSRFPESKY----ELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMR 167 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (194)
++++++............ ............++|+++|+||+|+.+. .+.+....+.. ..
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~--~~~~~~~~~~~---------------~~ 145 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AENLEAFKEKL---------------TD 145 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HHHHHHHHHHC---------------CS
T ss_pred hhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhH--HHHHHHHHHHh---------------cc
Confidence 999998776544333222 1122222344457899999999999763 12222222211 12
Q ss_pred ceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 168 PMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 168 ~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
..+++++||++|.|+++|+++|.+.+
T Consensus 146 ~~~v~~iSA~~g~Gi~~L~~~i~~~L 171 (185)
T d1lnza2 146 DYPVFPISAVTREGLRELLFEVANQL 171 (185)
T ss_dssp CCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.89 E-value=7.6e-23 Score=146.12 Aligned_cols=166 Identities=14% Similarity=0.093 Sum_probs=108.8
Q ss_pred CCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc------cccCCCcce----------------------------eEEE
Q psy2159 16 GLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ------HMPTLHPTS----------------------------EELS 61 (194)
Q Consensus 16 ~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~------~~~t~~~~~----------------------------~~~~ 61 (194)
+..+|+++|+++|+.++|||||+++|.+..... ...+..... ....
T Consensus 3 ~~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (205)
T d2qn6a3 3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEP 82 (205)
T ss_dssp CCCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCC
T ss_pred CCCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccc
Confidence 345788999999999999999999998632210 000000000 0001
Q ss_pred eCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHH
Q psy2159 62 MGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASED 141 (194)
Q Consensus 62 ~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~ 141 (194)
.....+.+.|+||+..|.......+..+|++++|+|+.+.-.....++.+...... ...|+||++||+|+.+.....
T Consensus 83 ~~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~ 159 (205)
T d2qn6a3 83 KFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEAL 159 (205)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHH
T ss_pred cceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHH
Confidence 11257999999999999887777788999999999998853233334444433322 335889999999997632222
Q ss_pred HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 142 EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 142 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+......... .......++++++||++|.|++++++.|.++++
T Consensus 160 ~~~~~~~~~l----------~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 160 SQYRQIKQFT----------KGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp HHHHHHHHHH----------TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHh----------ccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 2222221111 112234478999999999999999999988764
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.88 E-value=7.6e-23 Score=144.65 Aligned_cols=160 Identities=17% Similarity=0.199 Sum_probs=113.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC-------CC---------C---ccccCCCcceeEEEeCCEEEEEEEcCCCccch
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND-------RT---------A---QHMPTLHPTSEELSMGDIVFTTHDLGGHVQAR 79 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~-------~~---------~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~ 79 (194)
+|+++|+++|+.++|||||++++.+. .. . ...-|+......+...+..+.++|+||+.++.
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~ 80 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV 80 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence 46789999999999999999999752 00 0 01113333344566678999999999999998
Q ss_pred hhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCC-HH----HHHhhhcccCccC
Q psy2159 80 RVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAAS-ED----EVRHFFGLYGLTT 154 (194)
Q Consensus 80 ~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~-~~----e~~~~~~~~~~~~ 154 (194)
......+..+|++++|+|+.+.. ..+..+.+..+... ...|+|+++||+|+..+.. .+ +++..+....
T Consensus 81 ~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~--- 153 (196)
T d1d2ea3 81 KNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG--- 153 (196)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT---
T ss_pred HHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhC---
Confidence 88888889999999999998854 44445545544343 4568999999999875321 22 2333333322
Q ss_pred CCccCcccccCCcceEEEEeccccC----------CChHHHHHHHhhhcC
Q psy2159 155 GKEFTPREILQMRPMELFMCSVLKR----------QGFGNGFRWLANYID 194 (194)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~Sa~~~----------~~v~~l~~~l~~~i~ 194 (194)
......+++++||++| .++.+|++.+.+.++
T Consensus 154 ---------~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP 194 (196)
T d1d2ea3 154 ---------YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (196)
T ss_dssp ---------SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred ---------CCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence 3334578999999998 599999999988763
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.88 E-value=1.7e-22 Score=143.18 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=94.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCC-CccccCCCc--ceeEEEeCCEEEEEEEcCCCccc----------h---hhHhhh
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRT-AQHMPTLHP--TSEELSMGDIVFTTHDLGGHVQA----------R---RVWRDY 85 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~~~d~~g~~~~----------~---~~~~~~ 85 (194)
.+|+++|++|||||||+|+|++.+. ..+.+.... ........ ..+.+.|+++.... . ......
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc-ccceEEEEEeeccccccccccchhhhHHhhhhcc
Confidence 3899999999999999999997643 222221111 11122222 23445666653211 1 112223
Q ss_pred hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccC
Q psy2159 86 FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQ 165 (194)
Q Consensus 86 ~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
+..+|++++++|++++. ......+.+.+.. .++|+++|+||+|+.+....++..+.+.... ..
T Consensus 103 ~~~~~~vi~viD~~~~~--~~~~~~~~~~l~~---~~~piivv~NK~D~~~~~~~~~~~~~~~~~l------------~~ 165 (195)
T d1svia_ 103 REELKAVVQIVDLRHAP--SNDDVQMYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTL------------NI 165 (195)
T ss_dssp CTTEEEEEEEEETTSCC--CHHHHHHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHH------------TC
T ss_pred ccchhhhhhhhhccccc--ccccccccccccc---ccCcceechhhccccCHHHHHHHHHHHHHHh------------cc
Confidence 45678999999998753 3333333333333 4689999999999876555555444443322 12
Q ss_pred CcceEEEEeccccCCChHHHHHHHhhhcC
Q psy2159 166 MRPMELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 166 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
....+++++||++|.|+++++++|.+.++
T Consensus 166 ~~~~~~~~~SA~~~~gi~el~~~i~~~l~ 194 (195)
T d1svia_ 166 DPEDELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred cCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 34467899999999999999999998764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.88 E-value=2.4e-22 Score=145.64 Aligned_cols=167 Identities=17% Similarity=0.100 Sum_probs=103.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCc---cccCCCcce------------------eEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQ---HMPTLHPTS------------------EELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~---~~~t~~~~~------------------~~~~~~~~~~~~~d~~g~~~~ 78 (194)
|...|+++|++++|||||++++.+..... ...|.+... ..+..++..+.++||||+..+
T Consensus 4 r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f 83 (227)
T d1g7sa4 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (227)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecc
Confidence 33459999999999999999998753211 001111111 123345678999999999998
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCH---HHHHhhhcc-----
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFDAASE---DEVRHFFGL----- 149 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---~e~~~~~~~----- 149 (194)
.......+..+|++++|+|+.+.- .... ..+..+.. .++|+|+++||+|+...... +.+...+..
T Consensus 84 ~~~~~~~~~~~D~~ilVvda~~g~--~~~~~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v 157 (227)
T d1g7sa4 84 TTLRKRGGALADLAILIVDINEGF--KPQTQEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQV 157 (227)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCC--CHHHHHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHH
T ss_pred cccchhcccccceEEEEEecccCc--ccchhHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHH
Confidence 887777788999999999998743 3333 33333333 57899999999998652211 111111100
Q ss_pred --------------cCccCCCcc-CcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 150 --------------YGLTTGKEF-TPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 150 --------------~~~~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
........+ ...........+++++||++|.|+++|++.|.+.
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l 215 (227)
T d1g7sa4 158 QQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (227)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 000000000 0011112334689999999999999999988653
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=2.7e-21 Score=137.63 Aligned_cols=158 Identities=20% Similarity=0.244 Sum_probs=109.9
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC--------CCC------------ccccCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND--------RTA------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~--------~~~------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+|+++|+++|++++|||||+++|+.. ... ...-|+......+..++.++.++||||+.++
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df 80 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 80 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence 47899999999999999999999632 111 0133566666788889999999999999999
Q ss_pred hhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCc-EEEEeeCCCCCCCCC-HHH----HHhhhcccCc
Q psy2159 79 RRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVP-ILILGNKIDIFDAAS-EDE----VRHFFGLYGL 152 (194)
Q Consensus 79 ~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p-iiiv~nK~D~~~~~~-~~e----~~~~~~~~~~ 152 (194)
.......++.+|++++|+|+.+.. ..+....|..... .+.| +++++||+|+.+... .++ +.+.+....
T Consensus 81 ~~~~~~~~~~aD~avlVvda~~Gv-~~qt~~~~~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~~l~~~~- 154 (204)
T d2c78a3 81 IKNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYE- 154 (204)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHHHHHhcC-
Confidence 988888899999999999998754 3344444444433 3555 778899999866311 233 333333322
Q ss_pred cCCCccCcccccCCcceEEEEeccccC-----------C-------ChHHHHHHHhhhc
Q psy2159 153 TTGKEFTPREILQMRPMELFMCSVLKR-----------Q-------GFGNGFRWLANYI 193 (194)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~-----------~-------~v~~l~~~l~~~i 193 (194)
......++++.||..+ . .+.+|++.+.+++
T Consensus 155 -----------~~~~~i~~i~~sa~~~~~~~~~~~~~~~~~~~~~~~I~eLLdaIde~i 202 (204)
T d2c78a3 155 -----------FPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI 202 (204)
T ss_dssp -----------SCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred -----------CCcccceeeeeechhhhhhhhcCccccCCcccchhhHHHHHHHHHHhC
Confidence 3334467888888533 1 3566777776655
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.9e-20 Score=132.56 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=114.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhh----hhcCCEEEEE
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDY----FPAVDAIVFI 95 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~~~d~ii~v 95 (194)
.+..|+++|++|||||||+|+|.+.++... .|.......+..++..+.+||+||+......+..+ ...++.++++
T Consensus 2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~~-tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~ 80 (209)
T d1nrjb_ 2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFM 80 (209)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCe-EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceE
Confidence 356899999999999999999999876532 33344455566777889999999999776655443 3456889999
Q ss_pred EECCC-CCChHHHHHHHHHHH---hCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccC-----------------ccC
Q psy2159 96 IDASD-RSRFPESKYELDNLL---ADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYG-----------------LTT 154 (194)
Q Consensus 96 ~d~~~-~~~~~~~~~~~~~~~---~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~-----------------~~~ 154 (194)
+|..+ ..++.....++.+.. ......++|+++++||+|+......+.+.+.++... ...
T Consensus 81 vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 160 (209)
T d1nrjb_ 81 VDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINE 160 (209)
T ss_dssp EETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred EEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccCcHHHHHHHHHHHHHHHHHHHcCCCceeeeccch
Confidence 99764 666777777665443 233447899999999999987655544333321100 000
Q ss_pred C-----------CccCcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 155 G-----------KEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 155 ~-----------~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
. ....+..+.......+++.|++.+ +++++.+||.++|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~i~ekl 209 (209)
T d1nrjb_ 161 EDYAENTLDVLQSTDGFKFANLEASVVAFEGSINKR-KISQWREWIDEKL 209 (209)
T ss_dssp -------CTTC----CCCGGGSSSCEEEEECBTTTT-BCHHHHHHHHHHC
T ss_pred hhhHHHHHHhhccccccchhhCcCCceEEEEeeccc-cHHHHHHHHHHhC
Confidence 0 111112222333566778887764 6999999998865
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.83 E-value=7.9e-20 Score=131.34 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=101.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCCCC------------------------------------ccccCCCcceeEEEe
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDRTA------------------------------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~~~------------------------------------~~~~t~~~~~~~~~~ 62 (194)
+..++|+++|+.++|||||+++|+...-. ....|.......+..
T Consensus 7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~ 86 (222)
T d1zunb3 7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 86 (222)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence 46778999999999999999999632100 001122223345566
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCC-CcEEEEeeCCCCCCCC--C
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTD-VPILILGNKIDIFDAA--S 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~piiiv~nK~D~~~~~--~ 139 (194)
.+..+.++|+||+..+..........+|++++|+|+.+.. ..+..+.+..... .+ +.+|+++||+|+.+.. .
T Consensus 87 ~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~-~~Qt~e~~~~~~~----~gv~~iiv~vNK~D~~~~~~~~ 161 (222)
T d1zunb3 87 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASL----LGIKHIVVAINKMDLNGFDERV 161 (222)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCEEEEEEECTTTTTSCHHH
T ss_pred cceEEEEEeccchhhhhhhhccccccCceEEEEeccccCc-ccchHHHHHHHHH----cCCCEEEEEEEcccccccccee
Confidence 7799999999999999888888889999999999998753 3333333333322 34 4588999999987621 1
Q ss_pred HH----HHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 140 ED----EVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 140 ~~----e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
.+ ++...++... .....++|+|+||.+|+|+.+
T Consensus 162 ~~~~~~~l~~~~~~~~------------~~~~~i~~IPiSA~~G~ni~~ 198 (222)
T d1zunb3 162 FESIKADYLKFAEGIA------------FKPTTMAFVPMSALKGDNVVN 198 (222)
T ss_dssp HHHHHHHHHHHHHTTT------------CCCSEEEEEECCTTTCTTTSS
T ss_pred hhhhHHHHhhhhHhhc------------cCCCceEEEEEEcccCccCCc
Confidence 12 2333333322 333557899999999998843
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=7.2e-19 Score=122.37 Aligned_cols=152 Identities=15% Similarity=0.205 Sum_probs=99.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcc-eeEEEeCCEEEEEEEcCCCccchhh---------HhhhhhcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPT-SEELSMGDIVFTTHDLGGHVQARRV---------WRDYFPAV 89 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~---------~~~~~~~~ 89 (194)
.|+++|.+|||||||+|+|++.+.. ....|.... ......+...+..+|++|....... .......+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 5789999999999999999987654 233333333 4555567778888899886532211 11122356
Q ss_pred CEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccccCCcce
Q psy2159 90 DAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREILQMRPM 169 (194)
Q Consensus 90 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (194)
++++++.|..+. ......+...+.. ...|.++++||+|.... .+++....+... ......
T Consensus 87 ~~~l~~~d~~~~--~~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~--~~~~~~~~~~~~------------~~~~~~ 146 (179)
T d1egaa1 87 ELVIFVVEGTRW--TPDDEMVLNKLRE----GKAPVILAVNKVDNVQE--KADLLPHLQFLA------------SQMNFL 146 (179)
T ss_dssp EEEEEEEETTCC--CHHHHHHHHHHHS----SSSCEEEEEESTTTCCC--HHHHHHHHHHHH------------TTSCCS
T ss_pred ceeEEEEecCcc--chhHHHHHHHhhh----ccCceeeeeeeeeccch--hhhhhhHhhhhh------------hhcCCC
Confidence 777788887653 3343444444433 46789999999998763 222222222111 122336
Q ss_pred EEEEeccccCCChHHHHHHHhhhcC
Q psy2159 170 ELFMCSVLKRQGFGNGFRWLANYID 194 (194)
Q Consensus 170 ~~~~~Sa~~~~~v~~l~~~l~~~i~ 194 (194)
+++++||++|.|+++|+++|.+.++
T Consensus 147 ~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 147 DIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp EEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred CEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999998763
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.79 E-value=1.7e-19 Score=130.10 Aligned_cols=151 Identities=18% Similarity=0.201 Sum_probs=99.3
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC--CC--------------------------------ccccCCCcceeEEEeCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR--TA--------------------------------QHMPTLHPTSEELSMGD 64 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~--~~--------------------------------~~~~t~~~~~~~~~~~~ 64 (194)
+++++|+++|+.++|||||+.+|+... .. ....|.......++.++
T Consensus 1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~ 80 (224)
T d1jnya3 1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 80 (224)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence 468899999999999999999886310 00 11123334445677788
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC------ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC-C
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS------RFPESKYELDNLLADDALTDVPILILGNKIDIFD-A 137 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~-~ 137 (194)
..+++.|+||+..|.......++.+|++++|+|+.+.. ...+..+.+...... ...++|+++||+|+.. .
T Consensus 81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~---~~~~iIv~iNK~D~~~~~ 157 (224)
T d1jnya3 81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM---GLDQLIVAVNKMDLTEPP 157 (224)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT---TCTTCEEEEECGGGSSST
T ss_pred ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh---CCCceEEEEEcccCCCcc
Confidence 99999999999999998888899999999999998742 112233222222221 3457899999999865 2
Q ss_pred CCH---HHH----HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHH
Q psy2159 138 ASE---DEV----RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGN 184 (194)
Q Consensus 138 ~~~---~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 184 (194)
... +++ ...+.... ......+++++||.+|.|+.+
T Consensus 158 ~~~~~~~~v~~~i~~~~~~~~------------~~~~~i~~IPISA~~G~NV~~ 199 (224)
T d1jnya3 158 YDEKRYKEIVDQVSKFMRSYG------------FNTNKVRFVPVVAPSGDNITH 199 (224)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT------------CCCTTCEEEECBTTTTBTTTB
T ss_pred ccHHHHHHHHHHHHhHHHhcC------------CCcccCeEEEEEccCCCCccc
Confidence 222 222 22222222 334457899999999999854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=4.5e-18 Score=125.19 Aligned_cols=109 Identities=18% Similarity=0.139 Sum_probs=86.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC--C-------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT--A-------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~--~-------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|+.|+|||||+.++....- . ....|+......+++++.+++++||||+.++...
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e 87 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE 87 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence 699999999999999999974211 0 1222556667788999999999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
....++.+|++|+|+|+.+.- -......|..... .+.|.++++||+|...
T Consensus 88 ~~~~l~~~D~avlVvda~~Gv-~~~T~~~w~~a~~----~~lP~i~fINKmDr~~ 137 (276)
T d2bv3a2 88 VERSMRVLDGAIVVFDSSQGV-EPQSETVWRQAEK----YKVPRIAFANKMDKTG 137 (276)
T ss_dssp HHHHHHHCCEEEEEEETTTSS-CHHHHHHHHHHHT----TTCCEEEEEECTTSTT
T ss_pred HHHHHHhhhheEEeccccCCc-chhHHHHHHHHHH----cCCCEEEEEecccccc
Confidence 888899999999999998854 2333444544433 5899999999999876
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.78 E-value=8.6e-18 Score=123.39 Aligned_cols=108 Identities=19% Similarity=0.125 Sum_probs=84.1
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCC---------------------ccccCCCcceeEEEeCCEEEEEEEcCCCccchhh
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTA---------------------QHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRV 81 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~ 81 (194)
+|+++|+.++|||||+.++....-. ....|+......+..++.+++++||||+.+|...
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e 83 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE 83 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence 5889999999999999999632110 0122555556778899999999999999999998
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCC
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIF 135 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~ 135 (194)
....++.+|++++|+|+.+.- .......|....+ .++|.++++||+|..
T Consensus 84 ~~~al~~~D~avlvvda~~Gv-~~~t~~~~~~~~~----~~~p~~i~iNk~D~~ 132 (267)
T d2dy1a2 84 IRGALEAADAALVAVSAEAGV-QVGTERAWTVAER----LGLPRMVVVTKLDKG 132 (267)
T ss_dssp HHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hhhhhcccCceEEEeeccCCc-cchhHHHHHhhhh----ccccccccccccccc
Confidence 888899999999999998754 3334444444444 578999999999974
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.77 E-value=5.4e-19 Score=128.27 Aligned_cols=151 Identities=14% Similarity=0.074 Sum_probs=105.9
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcC----------------------CCC------------ccccCCCcceeEEEe
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKND----------------------RTA------------QHMPTLHPTSEELSM 62 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~----------------------~~~------------~~~~t~~~~~~~~~~ 62 (194)
..+++++|+++|+.++|||||+.+++.. .+. +...|+......+..
T Consensus 2 ~~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~ 81 (239)
T d1f60a3 2 KEKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET 81 (239)
T ss_dssp CCCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC
T ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEecc
Confidence 3466789999999999999999999631 000 123366666778889
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC------ChHHHHHHHHHHHhCCCCCCC-cEEEEeeCCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS------RFPESKYELDNLLADDALTDV-PILILGNKIDIF 135 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~-piiiv~nK~D~~ 135 (194)
.+.++.+.|+||+.+|.......+..+|++++|+|+.... ...+....+..... .++ ++|+++||+|+.
T Consensus 82 ~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~----~gv~~iiv~iNKmD~~ 157 (239)
T d1f60a3 82 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSV 157 (239)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGG
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH----cCCCeEEEEEECCCCC
Confidence 9999999999999999988888899999999999997631 11233333333322 244 588899999987
Q ss_pred CCCC--H----HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChH
Q psy2159 136 DAAS--E----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFG 183 (194)
Q Consensus 136 ~~~~--~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 183 (194)
+... . +++...+.... .....++++++||..|.|+.
T Consensus 158 ~~d~~~~~~~~~el~~~l~~~~------------~~~~~i~~ipiSa~~G~ni~ 199 (239)
T d1f60a3 158 KWDESRFQEIVKETSNFIKKVG------------YNPKTVPFVPISGWNGDNMI 199 (239)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHT------------CCGGGCCEEECCTTTCBTTT
T ss_pred CCCHHHHHHHHHHHHHHHHhcC------------CCCCcEEEEEEEccCCCcce
Confidence 6321 1 23333333322 23345789999999998863
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.75 E-value=2.1e-18 Score=125.69 Aligned_cols=161 Identities=15% Similarity=0.045 Sum_probs=91.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCC--C--------------------------------ccccCCCcceeEEEeC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRT--A--------------------------------QHMPTLHPTSEELSMG 63 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 63 (194)
.+++++|+++|+.++|||||+.+|+...- . ....|+......+..+
T Consensus 21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~ 100 (245)
T d1r5ba3 21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 100 (245)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence 46778999999999999999999953110 0 0112333334466677
Q ss_pred CEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCC------ChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRS------RFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~------~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+..+.+.|+||+..+..........+|++++|+|+.+.. ...+..+.+...... .-.++++++||+|+...
T Consensus 101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~---~i~~iiv~iNKmD~~~~ 177 (245)
T d1r5ba3 101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GINHLVVVINKMDEPSV 177 (245)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TCSSEEEEEECTTSTTC
T ss_pred cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHc---CCCeEEEEEEcCCCCcc
Confidence 789999999999999988888889999999999998732 111333333333222 23358899999998752
Q ss_pred -CC---HHHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHH
Q psy2159 138 -AS---EDEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFR 187 (194)
Q Consensus 138 -~~---~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 187 (194)
.. .+++.+.++..... .........++++|+||++|+||.++++
T Consensus 178 ~~~e~~~~ei~~~l~~~l~~------i~~~~~~~~v~~VPiSA~~G~nI~~~~~ 225 (245)
T d1r5ba3 178 QWSEERYKECVDKLSMFLRR------VAGYNSKTDVKYMPVSAYTGQNVKDRVD 225 (245)
T ss_dssp SSCHHHHHHHHHHHHHHHHH------HHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred chhHHHHHHHHHHHHHHHHH------HhCcCcccCCEEEEeeccCCCCcccchh
Confidence 22 23333333221100 0000112247899999999999987643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=6.1e-17 Score=112.91 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=85.9
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCcc---ccCCCcce-eEEEeCCEEEEEEEcCCC-ccc-------hhhHhhh
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQH---MPTLHPTS-EELSMGDIVFTTHDLGGH-VQA-------RRVWRDY 85 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~---~~t~~~~~-~~~~~~~~~~~~~d~~g~-~~~-------~~~~~~~ 85 (194)
.....+|+++|.+|||||||+|++.+.+.... .++..... ......+......+.++. ... .......
T Consensus 13 ~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (188)
T d1puia_ 13 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY 92 (188)
T ss_dssp CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHH
T ss_pred CccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhhhh
Confidence 34678999999999999999999998765422 22222222 222333433333333321 111 1111111
Q ss_pred h---hcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH----HHhhhcccCccCCCcc
Q psy2159 86 F---PAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE----VRHFFGLYGLTTGKEF 158 (194)
Q Consensus 86 ~---~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e----~~~~~~~~~~~~~~~~ 158 (194)
. ...+.++.+.+..... ......++..... ...++++++||+|+........ +.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~--------- 158 (188)
T d1puia_ 93 LEKRQSLQGLVVLMDIRHPL-KDLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLA--------- 158 (188)
T ss_dssp HHHCTTEEEEEEEEETTSCC-CHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGG---------
T ss_pred hhhhhheeEEEEeecccccc-hhHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHh---------
Confidence 2 2334455555555543 3333344444433 4678999999999876322222 2222221
Q ss_pred CcccccCCcceEEEEeccccCCChHHHHHHHhhhc
Q psy2159 159 TPREILQMRPMELFMCSVLKRQGFGNGFRWLANYI 193 (194)
Q Consensus 159 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 193 (194)
.....+++++||++|.|+++|++.|.+.+
T Consensus 159 ------~~~~~~~i~vSA~~g~Gid~L~~~i~~~~ 187 (188)
T d1puia_ 159 ------FNGDVQVETFSSLKKQGVDKLRQKLDTWF 187 (188)
T ss_dssp ------GCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------hCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence 12346899999999999999999998765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=1.5e-15 Score=117.87 Aligned_cols=169 Identities=12% Similarity=0.080 Sum_probs=96.3
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cc----cCCCcceeEEEe-CCEEEEEEEcCCCcc
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HM----PTLHPTSEELSM-GDIVFTTHDLGGHVQ 77 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~----~t~~~~~~~~~~-~~~~~~~~d~~g~~~ 77 (194)
.+++.++.++ ..+++|+++|.+|+|||||+|++.+..... .. .|... ..+.. ++..+.+|||||...
T Consensus 44 ~i~~~l~~~~--~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~--~~~~~~~~~~~~l~DtPG~~~ 119 (400)
T d1tq4a_ 44 AISDALKEID--SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMER--HPYKHPNIPNVVFWDLPGIGS 119 (400)
T ss_dssp HHHHHHHHHH--HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCC--EEEECSSCTTEEEEECCCGGG
T ss_pred HHHHHHHhcc--cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceee--eeeeccCCCeEEEEeCCCccc
Confidence 3444454443 567999999999999999999999854321 11 12221 12222 334688999999764
Q ss_pred chh-----hHhhhhhcCCEEEEEEECCCCCChHHHH-HHHHHHHhCCCCCCCcEEEEeeCCCCCC---------CCCHHH
Q psy2159 78 ARR-----VWRDYFPAVDAIVFIIDASDRSRFPESK-YELDNLLADDALTDVPILILGNKIDIFD---------AASEDE 142 (194)
Q Consensus 78 ~~~-----~~~~~~~~~d~ii~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~piiiv~nK~D~~~---------~~~~~e 142 (194)
... ........+|.++++.|.. +.... ..+..+ .. .++|+++|.||+|... ....++
T Consensus 120 ~~~~~~~~~~~~~~~~~d~~l~~~~~~----~~~~d~~l~~~l-~~---~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~ 191 (400)
T d1tq4a_ 120 TNFPPDTYLEKMKFYEYDFFIIISATR----FKKNDIDIAKAI-SM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEK 191 (400)
T ss_dssp SSCCHHHHHHHTTGGGCSEEEEEESSC----CCHHHHHHHHHH-HH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHH
T ss_pred ccccHHHHHHHhhhhcceEEEEecCCC----CCHHHHHHHHHH-HH---cCCCEEEEEeCcccccchhhhcccccccHHH
Confidence 322 1222355688888887642 33333 334444 33 4789999999999531 122222
Q ss_pred HHhhhcccCccCCCccCcccccCCcceEEEEecccc--CCChHHHHHHHhhhc
Q psy2159 143 VRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLK--RQGFGNGFRWLANYI 193 (194)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~--~~~v~~l~~~l~~~i 193 (194)
..+.+..... ......+....+++.+|..+ ..++.+|.+++.+.+
T Consensus 192 ~l~~ir~~~~------~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L 238 (400)
T d1tq4a_ 192 VLQDIRLNCV------NTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL 238 (400)
T ss_dssp HHHHHHHHHH------HHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred HHHHHHHHHH------HHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHh
Confidence 2211110000 00000122334578888754 458999999988765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.57 E-value=7.7e-14 Score=102.07 Aligned_cols=118 Identities=10% Similarity=0.067 Sum_probs=79.6
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcCCCCc----cccCCCcceeEEEeCCEEEEEEEcCCCccchh-------hHh--h
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQ----HMPTLHPTSEELSMGDIVFTTHDLGGHVQARR-------VWR--D 84 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~--~ 84 (194)
...+++|+++|.+|+|||||+|++++..... ...|..........++..+.++||||...... ... .
T Consensus 29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~ 108 (257)
T d1h65a_ 29 DVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 108 (257)
T ss_dssp TCCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence 3578899999999999999999999877543 23345555677788999999999999653211 111 1
Q ss_pred hhhcCCEEEEEEECCCCCChHHH-HHHHHHHHhCC-CCCCCcEEEEeeCCCCCC
Q psy2159 85 YFPAVDAIVFIIDASDRSRFPES-KYELDNLLADD-ALTDVPILILGNKIDIFD 136 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~~-~~~~~piiiv~nK~D~~~ 136 (194)
.....+++++|++.+... +... ...+..+.+.. ...-.++++|+||+|...
T Consensus 109 ~~~~~~~il~v~~~~~~r-~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~ 161 (257)
T d1h65a_ 109 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 161 (257)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred hcCCCCeEEEEEECCCCC-CCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence 234578999999887643 3332 23333332211 112358999999999865
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=1.3e-14 Score=109.61 Aligned_cols=125 Identities=16% Similarity=0.190 Sum_probs=86.6
Q ss_pred CCCC-eEEEEcCCCCChHHHHHHHHcCC--CC-------c----------cccCCCcceeEEEe----------------
Q psy2159 19 KKSG-KLLFLGLDNAGKTFLLQMLKNDR--TA-------Q----------HMPTLHPTSEELSM---------------- 62 (194)
Q Consensus 19 ~~~~-~i~v~G~~~~GKStli~~~~~~~--~~-------~----------~~~t~~~~~~~~~~---------------- 62 (194)
+..+ +|+++|+.++|||||+.++.... .. . ..-|+......+.+
T Consensus 14 ~~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~ 93 (341)
T d1n0ua2 14 VTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDG 93 (341)
T ss_dssp GGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCS
T ss_pred cccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccc
Confidence 3445 49999999999999999997311 10 0 11122222222221
Q ss_pred CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC---CCC
Q psy2159 63 GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD---AAS 139 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~---~~~ 139 (194)
++..++++||||+..+.......++-+|++++|+|+.+.-. .+....|..... .+.|+++++||+|... ...
T Consensus 94 ~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~-~qT~~~~~~a~~----~~~p~i~viNKiDr~~~el~~~ 168 (341)
T d1n0ua2 94 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVC-VQTETVLRQALG----ERIKPVVVINKVDRALLELQVS 168 (341)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSC-HHHHHHHHHHHH----TTCEEEEEEECHHHHHHTSCCC
T ss_pred cceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcc-hhHHHHHHHHHH----cCCCeEEEEECcccccccHHhh
Confidence 23679999999999999988888999999999999988543 333444444444 5789999999999643 456
Q ss_pred HHHHHhhhc
Q psy2159 140 EDEVRHFFG 148 (194)
Q Consensus 140 ~~e~~~~~~ 148 (194)
++++.+.+.
T Consensus 169 ~~~~~~~l~ 177 (341)
T d1n0ua2 169 KEDLYQTFA 177 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 667665553
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.52 E-value=1.6e-15 Score=110.00 Aligned_cols=125 Identities=13% Similarity=0.109 Sum_probs=69.2
Q ss_pred EEEEEEEcCCCccchhhH---hhhh--hcCCEEEEEEECCCCCChHHHHHH-HH--HHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVW---RDYF--PAVDAIVFIIDASDRSRFPESKYE-LD--NLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~---~~~~--~~~d~ii~v~d~~~~~~~~~~~~~-~~--~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
..+.+.|+||+.+..... .... ...+.+++++|+.....-...... +. ....+ ...|.++++||+|+..
T Consensus 95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~ 171 (244)
T d1yrba1 95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLS 171 (244)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCC
T ss_pred cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeecccccc
Confidence 458999999998754321 2122 235789999998654332222211 11 11111 3679999999999977
Q ss_pred CCCHHHHHhhhcccCccCC----CccCc---------ccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 137 AASEDEVRHFFGLYGLTTG----KEFTP---------REILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 137 ~~~~~e~~~~~~~~~~~~~----~~~~~---------~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
....+.+....+....... ..... .........+++++||++|+|++++++.|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~ 240 (244)
T d1yrba1 172 EEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH 240 (244)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4333333222211100000 00000 00001234679999999999999999998874
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=1.7e-13 Score=103.17 Aligned_cols=161 Identities=16% Similarity=0.153 Sum_probs=89.2
Q ss_pred HHHHHh-CCcCCCCeEEEEcCCCCChHHHHHHHHcC------CCC--ccccCCCcce-------eEEE------------
Q psy2159 10 EVLLRL-GLWKKSGKLLFLGLDNAGKTFLLQMLKND------RTA--QHMPTLHPTS-------EELS------------ 61 (194)
Q Consensus 10 ~~~~~~-~~~~~~~~i~v~G~~~~GKStli~~~~~~------~~~--~~~~t~~~~~-------~~~~------------ 61 (194)
..+..+ +...+..+|.+.|+||||||||++++... +.. ...|+...+. ..+.
T Consensus 42 ~ll~~~~~~~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~ 121 (327)
T d2p67a1 42 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRP 121 (327)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEE
T ss_pred HHHHHhhhccCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccc
Confidence 344443 34567899999999999999999999742 221 1111111100 0000
Q ss_pred e----------------------CCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCC
Q psy2159 62 M----------------------GDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDA 119 (194)
Q Consensus 62 ~----------------------~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~ 119 (194)
. .|..+.+++|.|..... ..+...+|.+++|.++...+........+.++
T Consensus 122 ~~~~g~lgg~~~~~~~~~~~~~~~g~d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~----- 193 (327)
T d2p67a1 122 VPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEV----- 193 (327)
T ss_dssp ECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHH-----
T ss_pred cccccccccchhhhhHHHHHHHhcCCCeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchhhhcc-----
Confidence 0 01234555555543211 22455789999999876655555555555554
Q ss_pred CCCCcEEEEeeCCCCCCCCCH----HHHHhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 120 LTDVPILILGNKIDIFDAASE----DEVRHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 120 ~~~~piiiv~nK~D~~~~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
+=++|+||+|+...... .++...+.... .....-..+++.|||.+|+|++++++.|.+.
T Consensus 194 ----aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~----------~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~ 256 (327)
T d2p67a1 194 ----ADLIVINKDDGDNHTNVAIARHMYESALHILR----------RKYDEWQPRVLTCSALEKRGIDEIWHAIIDF 256 (327)
T ss_dssp ----CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSC----------CSBTTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred ----ccEEEEEeecccchHHHHHHHHHHHHHhhhcc----------cCCCCCcceeEEEEeeCCCCHHHHHHHHHHH
Confidence 23899999998762222 22222222111 0012223579999999999999999998763
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=99.40 E-value=1.9e-13 Score=102.74 Aligned_cols=154 Identities=13% Similarity=0.057 Sum_probs=90.2
Q ss_pred CcCCCCeEEEEcCCCCChHHHHHHHHcC------CCC----ccccCC-----------------CcceeE----------
Q psy2159 17 LWKKSGKLLFLGLDNAGKTFLLQMLKND------RTA----QHMPTL-----------------HPTSEE---------- 59 (194)
Q Consensus 17 ~~~~~~~i~v~G~~~~GKStli~~~~~~------~~~----~~~~t~-----------------~~~~~~---------- 59 (194)
...+..+|.+.|+||+|||||++++... +.. .+.++. ++....
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~g 126 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLG 126 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHH
T ss_pred ccCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeecccccccccc
Confidence 4557889999999999999999998853 110 111100 000000
Q ss_pred ------------EEeCCEEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEE
Q psy2159 60 ------------LSMGDIVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILI 127 (194)
Q Consensus 60 ------------~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piii 127 (194)
++..|+.+.++.|.|....... ....+|.+++|..+...+..+..+.-+.++ +=++
T Consensus 127 g~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~---~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~---------aDi~ 194 (323)
T d2qm8a1 127 GVAAKTRETMLLCEAAGFDVILVETVGVGQSETA---VADLTDFFLVLMLPGAGDELQGIKKGIFEL---------ADMI 194 (323)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHH---HHTTSSEEEEEECSCC------CCTTHHHH---------CSEE
T ss_pred chhHHHHHHHHhhccCCCCeEEEeehhhhhhhhh---hhcccceEEEEeeccchhhhhhhhhhHhhh---------hhee
Confidence 0112456778888776543332 234589999999887765444433333333 3399
Q ss_pred EeeCCCCCCCCCH-HHH----HhhhcccCccCCCccCcccccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 128 LGNKIDIFDAASE-DEV----RHFFGLYGLTTGKEFTPREILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 128 v~nK~D~~~~~~~-~e~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
|+||+|+...... ... ...+.... ........+++.+||++|+|+++++++|.+.
T Consensus 195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~ 254 (323)
T d2qm8a1 195 AVNKADDGDGERRASAAASEYRAALHILT----------PPSATWTPPVVTISGLHGKGLDSLWSRIEDH 254 (323)
T ss_dssp EEECCSTTCCHHHHHHHHHHHHHHHTTBC----------CSBTTBCCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred eEeccccccchHHHHHHHHHHHHHhhccc----------ccccCCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 9999998763222 111 22222111 1122234579999999999999999999764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.36 E-value=1.6e-11 Score=90.51 Aligned_cols=79 Identities=23% Similarity=0.284 Sum_probs=61.5
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc--
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA-- 78 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~-- 78 (194)
.++|.++|.|+||||||+++++..+.. .++.|+.++.+.+..+. ..+.+.|.||.-..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 369999999999999999999987653 57889999998887753 25889999996532
Q ss_pred --hh---hHhhhhhcCCEEEEEEECC
Q psy2159 79 --RR---VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 79 --~~---~~~~~~~~~d~ii~v~d~~ 99 (194)
.. .+...++.+|+++.|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 22 2344578899999999874
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.09 E-value=4.2e-10 Score=83.50 Aligned_cols=81 Identities=23% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC---C-ccccCCCcceeEEEeCC-----------------EEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT---A-QHMPTLHPTSEELSMGD-----------------IVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~---~-~~~~t~~~~~~~~~~~~-----------------~~~~~~d~~g~~~~ 78 (194)
..++|.++|.|+||||||+|.+++... . .++.|+.++.+.+..+. ..+.+.|.||....
T Consensus 9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~g 88 (296)
T d1ni3a1 9 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 88 (296)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccccc
Confidence 568999999999999999999997643 2 57889999998887654 47899999985532
Q ss_pred ----h---hhHhhhhhcCCEEEEEEECCC
Q psy2159 79 ----R---RVWRDYFPAVDAIVFIIDASD 100 (194)
Q Consensus 79 ----~---~~~~~~~~~~d~ii~v~d~~~ 100 (194)
. ..+...++.+|+++.|+|+.+
T Consensus 89 A~~g~GLGn~fL~~ir~~d~lihVV~~f~ 117 (296)
T d1ni3a1 89 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 117 (296)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cccccccHHHHHHHhhccceeEEEEeccC
Confidence 2 234555789999999999865
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.09 E-value=1e-10 Score=87.83 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=46.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEE------------------------eCCEEEEEEEcCC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELS------------------------MGDIVFTTHDLGG 74 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~------------------------~~~~~~~~~d~~g 74 (194)
++|.++|.|+||||||+|++++.+.. .++.|+.++.+... .....++++|+||
T Consensus 1 ~~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pG 80 (319)
T d1wxqa1 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (319)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CcEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCC
Confidence 47999999999999999999987653 46678887766432 1125699999999
Q ss_pred Cccc----hhhHhh---hhhcCCEEEEEEECCC
Q psy2159 75 HVQA----RRVWRD---YFPAVDAIVFIIDASD 100 (194)
Q Consensus 75 ~~~~----~~~~~~---~~~~~d~ii~v~d~~~ 100 (194)
.-.. ..+... .++.+|++++|+|+.+
T Consensus 81 li~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~ 113 (319)
T d1wxqa1 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (319)
T ss_dssp --------------CCCSSTTCSEEEEEEETTC
T ss_pred cccchhcccchHHHHHHhhccceEEEEEecccc
Confidence 6432 222222 3568999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=1.8e-09 Score=80.03 Aligned_cols=132 Identities=13% Similarity=0.175 Sum_probs=80.2
Q ss_pred ccHHHHHHHHHHHhCCc--CCCCeEEEEcCCCCChHHHHHHHHcCCCC--ccccCC-Cccee------------------
Q psy2159 2 FEIWTKFREVLLRLGLW--KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMPTL-HPTSE------------------ 58 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~t~-~~~~~------------------ 58 (194)
+.+...+++.+..++.. ....+|+|+|.-++|||||+|++++..+. ...++. .++.-
T Consensus 5 ~~~~~~l~d~l~~lg~~~~~~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~ 84 (299)
T d2akab1 5 IPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGK 84 (299)
T ss_dssp HHHHHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCC
Confidence 34455666667777633 35668999999999999999999998752 222221 11110
Q ss_pred -------------------------------EEEe--C-CEEEEEEEcCCCccc-------------hhhHhhhhhcCCE
Q psy2159 59 -------------------------------ELSM--G-DIVFTTHDLGGHVQA-------------RRVWRDYFPAVDA 91 (194)
Q Consensus 59 -------------------------------~~~~--~-~~~~~~~d~~g~~~~-------------~~~~~~~~~~~d~ 91 (194)
.+.. . -..+.++|+||.... ..+...++...+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~ 164 (299)
T d2akab1 85 KFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC 164 (299)
T ss_dssp CBCCHHHHHHHHHHHHHHHCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTE
T ss_pred eeCCHHHHHHHHHHHHHHhhCCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccc
Confidence 0111 1 134889999995421 2334556666775
Q ss_pred EEE-EEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCC
Q psy2159 92 IVF-IIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDA 137 (194)
Q Consensus 92 ii~-v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 137 (194)
+++ |.+.....+-.....+...+ .....++++|+||+|+.++
T Consensus 165 ~il~v~~a~~~~~~~~~~~~~~~~----~~~~~r~i~Vltk~D~~~~ 207 (299)
T d2akab1 165 LILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVITKLDLMDE 207 (299)
T ss_dssp EEEEEEESSSCGGGCHHHHHHHHH----CTTCSSEEEEEECGGGSCT
T ss_pred eeeeecccccchhhhHHHHHHHHh----CcCCCceeeEEeccccccc
Confidence 554 55555443333434444443 2256789999999998773
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=99.06 E-value=2.2e-09 Score=79.88 Aligned_cols=131 Identities=18% Similarity=0.207 Sum_probs=78.3
Q ss_pred ccHHHHHHHHHHHhCCc-CCCCeEEEEcCCCCChHHHHHHHHcCCCC--cccc-CCCcce--------------------
Q psy2159 2 FEIWTKFREVLLRLGLW-KKSGKLLFLGLDNAGKTFLLQMLKNDRTA--QHMP-TLHPTS-------------------- 57 (194)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~i~v~G~~~~GKStli~~~~~~~~~--~~~~-t~~~~~-------------------- 57 (194)
+.+.-.+++.++.++.. ....+|+|+|..++|||||+|.+.+..+. ...| |-.++.
T Consensus 4 ~~~~n~l~d~~~~~~~~~~~lP~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~ 83 (306)
T d1jwyb_ 4 IPVINKLQDVFNTLGSDPLDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGE 83 (306)
T ss_dssp HHHHHHHHHHTTTSSSCTTCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEE
T ss_pred HHHHHHHHHHHHHhCcCCCCCCeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCccccCCEEEEEecCCcccCccchhhhhH
Confidence 34555666666666422 33458999999999999999999997752 1111 100000
Q ss_pred ---------------------------------------eEEEeCC-EEEEEEEcCCCcc-------------chhhHhh
Q psy2159 58 ---------------------------------------EELSMGD-IVFTTHDLGGHVQ-------------ARRVWRD 84 (194)
Q Consensus 58 ---------------------------------------~~~~~~~-~~~~~~d~~g~~~-------------~~~~~~~ 84 (194)
..+.... ..+.++|+||... ...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~ 163 (306)
T d1jwyb_ 84 FLHKPNDMFYDFSEIREEIIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMA 163 (306)
T ss_dssp ESSSTTCCBCCTHHHHHHHHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHH
T ss_pred HhhcCCceecCHHHHHHHHHHHHHHhcCCCCcccccceEEEecCCCCCCceEecCCCccccccCCcchhHHHHHHHHHHH
Confidence 0011111 3588999999643 1245666
Q ss_pred hhhcCCEEEEEE-ECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 85 YFPAVDAIVFII-DASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 85 ~~~~~d~ii~v~-d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
++..++.+++++ +......-.....+...+ .....++++|+||+|..+
T Consensus 164 yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~----~~~~~r~i~Vitk~D~~~ 212 (306)
T d1jwyb_ 164 YIKKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVITKLDLMD 212 (306)
T ss_dssp HHHSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEEECTTSSC
T ss_pred HHhCCCceeEEeecccccccccHHHHHHHHh----CcCCCeEEEEEecccccc
Confidence 788899877765 444333233333344443 224568999999999876
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.74 E-value=5e-09 Score=76.68 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=40.7
Q ss_pred HhCCcCCCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeE--EEeCCEEEEEEEcCCCc
Q psy2159 14 RLGLWKKSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEE--LSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 14 ~~~~~~~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~d~~g~~ 76 (194)
..+.....++++|+|.|+||||||+|++.+.+...+.++.|.+... +.. +..+.++||||.-
T Consensus 105 ~~~~~~~~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~-~~~~~l~DTPGi~ 168 (273)
T d1puja_ 105 AKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 168 (273)
T ss_dssp HTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred hccCCCCceEEEEEecCccchhhhhhhhhccceEEECCcccccccceEEEC-CCCeEEecCCCcc
Confidence 3445668899999999999999999999998887777766666432 222 3468999999954
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.54 E-value=7.8e-08 Score=70.20 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=64.8
Q ss_pred HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcc
Q psy2159 82 WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPR 161 (194)
Q Consensus 82 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 161 (194)
....+..+|+|++|+|+.+|.+..+ ..+..++ .++|.|+|+||+|+.+....+++.+.++...
T Consensus 9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~---------- 71 (273)
T d1puja_ 9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQG---------- 71 (273)
T ss_dssp HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT----------
T ss_pred HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHHHHHHHHHHHhcC----------
Confidence 4456888999999999998776554 3344554 3689999999999977544555666654433
Q ss_pred cccCCcceEEEEeccccCCChHHHHHHHhhh
Q psy2159 162 EILQMRPMELFMCSVLKRQGFGNGFRWLANY 192 (194)
Q Consensus 162 ~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~ 192 (194)
...+.+||+++.+..++.+.+.+.
T Consensus 72 -------~~~i~isa~~~~~~~~~~~~~~~~ 95 (273)
T d1puja_ 72 -------IRSLSINSVNGQGLNQIVPASKEI 95 (273)
T ss_dssp -------CCEEECCTTTCTTGGGHHHHHHHH
T ss_pred -------CccceeecccCCCccccchhhhhh
Confidence 568899999999999888776553
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=1.9e-07 Score=66.02 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=18.8
Q ss_pred CeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+.|. +.|..|||||||++++...
T Consensus 3 iPv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 3 IAVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred CCEEEEeeCCCCCHHHHHHHHHhc
Confidence 3444 5599999999999999875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=1e-07 Score=67.11 Aligned_cols=88 Identities=15% Similarity=0.188 Sum_probs=60.7
Q ss_pred hhhcCCEEEEEEECCCCCCh-HHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHHHHhhhcccCccCCCccCcccc
Q psy2159 85 YFPAVDAIVFIIDASDRSRF-PESKYELDNLLADDALTDVPILILGNKIDIFDAASEDEVRHFFGLYGLTTGKEFTPREI 163 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 163 (194)
...+.|.+++|+.+.+|..- ..+..++... .. .++|.+||+||+|+.++...+.+......+.
T Consensus 7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a-~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~------------ 70 (225)
T d1u0la2 7 HVANVDQVILVVTVKMPETSTYIIDKFLVLA-EK---NELETVMVINKMDLYDEDDLRKVRELEEIYS------------ 70 (225)
T ss_dssp TEESCCEEEEEECSSTTCCCHHHHHHHHHHH-HH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHT------------
T ss_pred CcccCCEEEEEEeCCCCCCCHHHHHHHHHHH-HH---cCCCEEEEEeCcccCCHHHHHHHHHhhcccc------------
Confidence 35688999999998886533 3333334333 33 5889999999999976433334444443221
Q ss_pred cCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 164 LQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 164 ~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
...+++.+||+++.|++++.+++..
T Consensus 71 ---~~~~v~~vSa~~~~g~~~L~~~l~~ 95 (225)
T d1u0la2 71 ---GLYPIVKTSAKTGMGIEELKEYLKG 95 (225)
T ss_dssp ---TTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred ---cceeEEEeccccchhHhhHHHHhcC
Confidence 1257899999999999999988754
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.42 E-value=1.4e-07 Score=66.45 Aligned_cols=55 Identities=18% Similarity=0.095 Sum_probs=34.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCCCCcccc-----------CCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDRTAQHMP-----------TLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~~~~~~~-----------t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
....+++|++|||||||+|++.+.....+.. |..... +.+++ .-.++||||-.++
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l--~~l~~-gg~iiDTPG~r~~ 160 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQL--LKFDF-GGYVVDTPGFANL 160 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCE--EECTT-SCEEESSCSSTTC
T ss_pred CCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeE--EEECC-CcEEEeCCccccc
Confidence 3467888999999999999998764332211 222222 33322 1378899997653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.39 E-value=2.5e-06 Score=57.53 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+||+++|++|+|||||++.+.+.
T Consensus 1 ~ki~I~G~~G~GKSTLl~~i~~~ 23 (178)
T d1ye8a1 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCcHHHHHHHHHHhc
Confidence 48999999999999999999874
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.27 E-value=2.7e-07 Score=65.12 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=59.1
Q ss_pred hhhcCCEEEEEEECCCCCC-hHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCCCCCHHH-HHhhhcccCccCCCccCccc
Q psy2159 85 YFPAVDAIVFIIDASDRSR-FPESKYELDNLLADDALTDVPILILGNKIDIFDAASEDE-VRHFFGLYGLTTGKEFTPRE 162 (194)
Q Consensus 85 ~~~~~d~ii~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~ 162 (194)
...+.|.+++|+++.+|.. ...+..++.. ... .+++.+||+||+|+.++...++ +..+.+.+
T Consensus 7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~-a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y------------ 70 (231)
T d1t9ha2 7 PICNVDQAVLVFSAVQPSFSTALLDRFLVL-VEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDY------------ 70 (231)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHH-HHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHH------------
T ss_pred CccccCEEEEEEECCCCCCCHHHHHHHHHH-HHH---cCCCEEEEEecccccccHHHHHHHHHHHHHH------------
Confidence 3568999999999887653 3333333333 333 6889999999999987533322 22222211
Q ss_pred ccCCcceEEEEeccccCCChHHHHHHHhh
Q psy2159 163 ILQMRPMELFMCSVLKRQGFGNGFRWLAN 191 (194)
Q Consensus 163 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 191 (194)
....++++.+||+++.|++++.+++..
T Consensus 71 --~~~g~~v~~~Sa~~~~gl~~L~~~l~~ 97 (231)
T d1t9ha2 71 --RNIGYDVYLTSSKDQDSLADIIPHFQD 97 (231)
T ss_dssp --HHHTCCEEECCHHHHTTCTTTGGGGTT
T ss_pred --hhccccceeeecCChhHHHHHHHhhcc
Confidence 112278999999999999998877654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.11 E-value=4.4e-07 Score=64.03 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=32.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCCCccc-----------cCCCcceeEEEeCCEEEEEEEcCCCccc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHM-----------PTLHPTSEELSMGDIVFTTHDLGGHVQA 78 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~~~~~-----------~t~~~~~~~~~~~~~~~~~~d~~g~~~~ 78 (194)
+....+++|++|+|||||+|+|.+.....+. .|..... +..+|. .++||||-.++
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l--~~~~gg--~iiDTPG~r~~ 161 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHTSGG--LVADTPGFSSL 161 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEETTE--EEESSCSCSSC
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEE--EecCCC--EEEECCccccc
Confidence 4456778899999999999999986432211 1222222 233442 47799997654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.95 E-value=2.6e-06 Score=57.11 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++|+++|++||||||+.+.|...
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~ 28 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAE 28 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 57789999999999999999999864
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.86 E-value=3.8e-06 Score=56.14 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++|+++|+|||||||+.+.|...
T Consensus 4 ~~~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.86 E-value=5.8e-05 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=19.7
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.-++++|++||||||.+-.|..
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3455667889999999999877664
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.84 E-value=1e-05 Score=57.03 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=32.5
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++..+ .++|++|||||||++.+.+- ..++.+.+.++|..
T Consensus 23 ~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl--------~~p~sG~I~~~g~~ 68 (230)
T d1l2ta_ 23 NVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL--------DKPTEGEVYIDNIK 68 (230)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred ceEEEEcCCCEEEEECCCCCCcchhhHhccCC--------CCCCcceeEECCEE
Confidence 34445555544 48899999999999999986 34566777777644
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=1.4e-05 Score=56.60 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=34.6
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
.+++..++..+ .++|++|||||||++.+.+- ..++.+.+.++|..+
T Consensus 23 ~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl--------~~p~sG~I~~~g~~i 69 (240)
T d3dhwc1 23 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL--------ERPTEGSVLVDGQEL 69 (240)
T ss_dssp EEEEEECSSCEEEEEESTTSSHHHHHHHHTTS--------SCCSEEEEEETTEEE
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC--------ccccCCceEEcCeEe
Confidence 34445555555 48899999999999999987 446778888888554
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.82 E-value=5.3e-06 Score=56.68 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++|+++|+|||||||+++.|...
T Consensus 2 ~Pm~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 2 DPLKVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998865
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=97.81 E-value=1.8e-05 Score=56.06 Aligned_cols=46 Identities=28% Similarity=0.475 Sum_probs=33.5
Q ss_pred hCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEE
Q psy2159 15 LGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFT 68 (194)
Q Consensus 15 ~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 68 (194)
+++..++. -+.++|+.|||||||++.+.+- ..++.+.+.++|..+.
T Consensus 22 vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl--------~~p~sG~I~~~g~~i~ 68 (240)
T d1g2912 22 MSLEVKDGEFMILLGPSGCGKTTTLRMIAGL--------EEPSRGQIYIGDKLVA 68 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEEE
T ss_pred eeeEEcCCCEEEEECCCCChHHHHHHHHhcC--------CCCCCCEEEECCEEec
Confidence 34444444 4558899999999999999987 4456777777775543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.80 E-value=1.3e-05 Score=56.67 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=29.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
-++++||.|||||||++.+.+- ..++.+.+.++|..+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl--------~~p~~G~I~~~G~~i 62 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGI--------VKPDRGEVRLNGADI 62 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEEC
T ss_pred EEEEECCCCChHHHHHHHHHcC--------CCCCceEEEECCEEC
Confidence 4568899999999999999997 445667777777543
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.80 E-value=1e-05 Score=55.84 Aligned_cols=46 Identities=26% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
+.+++..++..++ ++|+.|||||||++.+.+. ..++.+.+.++|..
T Consensus 18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl--------~~p~~G~I~~~g~~ 64 (200)
T d1sgwa_ 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY--------LKPLKGEIIYNGVP 64 (200)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--------cccCCCEEEECCEe
Confidence 3444454455444 8899999999999999986 44566777777643
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.80 E-value=3.9e-06 Score=56.64 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.3
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+|+|.|++|||||||++.|...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~ 30 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAV 30 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999874
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.80 E-value=6.9e-06 Score=56.08 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.++|+++|+|||||||+.+.|...
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999999864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=1.2e-05 Score=57.17 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=30.9
Q ss_pred HhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++.. +.-.++++|++|||||||++.+.+- ..++.+.+.++|.
T Consensus 21 ~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~ 65 (241)
T d2pmka1 21 NINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF--------YIPENGQVLIDGH 65 (241)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTE
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc--------CCCCCCEEEECCE
Confidence 344443 3446779999999999999999987 2344566666653
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.77 E-value=1.6e-05 Score=55.19 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=37.4
Q ss_pred CEEEEEEEcCCCccchh----hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCCCC
Q psy2159 64 DIVFTTHDLGGHVQARR----VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDIFD 136 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~----~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 136 (194)
+..+.++||+|...... .+..+ ....+-+++|.|..... +. ......+.+.. .+-=+++||.|...
T Consensus 92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~--~~-~~~~~~f~~~~----~~~~~I~TKlDe~~ 163 (207)
T d1ls1a2 92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ--EA-LSVARAFDEKV----GVTGLVLTKLDGDA 163 (207)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTH--HH-HHHHHHHHHHT----CCCEEEEECGGGCS
T ss_pred cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccch--hH-HHHHHHHHhhC----CCCeeEEeecCccc
Confidence 35789999999654332 11111 23568899999987743 22 22333332211 12248899999644
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.76 E-value=1.7e-05 Score=56.15 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=32.3
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
.+++..++..+ .++|++|||||||++.+.+- ..++.+.+.++|..
T Consensus 24 ~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl--------~~p~sG~I~i~g~~ 69 (239)
T d1v43a3 24 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL--------EEPTEGRIYFGDRD 69 (239)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS--------SCCSEEEEEETTEE
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHHcC--------CCCCCCEEEEccee
Confidence 34445555544 58899999999999999987 34556677776643
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.74 E-value=1.7e-05 Score=55.82 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=24.0
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.+++..++..++ ++|++|||||||++.+.+-
T Consensus 18 ~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl 49 (232)
T d2awna2 18 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 49 (232)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence 344455555444 7899999999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.74 E-value=7.8e-06 Score=55.25 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++|+++|+|||||||+++.|...
T Consensus 1 m~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 1 MNLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.73 E-value=1.2e-05 Score=54.94 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=24.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-+-++|+++|+|||||||+...|...
T Consensus 3 ~~r~mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 3 SARLLRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp SSCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHH
Confidence 457789999999999999999999975
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=8.2e-06 Score=54.30 Aligned_cols=21 Identities=38% Similarity=0.430 Sum_probs=18.8
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-++|+|++|||||||++.+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~ 24 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIP 24 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 467889999999999999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=97.69 E-value=1.4e-05 Score=56.11 Aligned_cols=46 Identities=28% Similarity=0.408 Sum_probs=33.8
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
.+++..++..++ ++|+.|||||||++.+.+- ..++.+.+.++|..+
T Consensus 18 ~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl--------~~p~sG~I~~~G~~i 64 (229)
T d3d31a2 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGF--------HVPDSGRILLDGKDV 64 (229)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTS--------SCCSEEEEEETTEEC
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhcC--------cCCCCCEEEEccEec
Confidence 344445555554 7899999999999999997 445677777777543
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.68 E-value=1.2e-05 Score=54.48 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=21.0
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++|+++|+|||||||+++.|...
T Consensus 1 M~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 1 MNIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.68 E-value=3e-05 Score=55.43 Aligned_cols=44 Identities=11% Similarity=0.193 Sum_probs=30.5
Q ss_pred HHhCCcCCC-CeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 13 LRLGLWKKS-GKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 13 ~~~~~~~~~-~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
+.+++..++ -.++++|++|||||||++.+.+- ..++.+.+.++|
T Consensus 32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g 76 (253)
T d3b60a1 32 RNINLKIPAGKTVALVGRSGSGKSTIASLITRF--------YDIDEGHILMDG 76 (253)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT--------TCCSEEEEEETT
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcc--------cCCCccEEEECC
Confidence 344444433 36778999999999999999986 234456666655
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=97.67 E-value=1.6e-05 Score=56.44 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.1
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.+++..++. .++++|++|||||||++.+.+-
T Consensus 18 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl 51 (242)
T d1mv5a_ 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF 51 (242)
T ss_dssp EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 44455555444 5558899999999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.67 E-value=1.1e-05 Score=57.81 Aligned_cols=46 Identities=13% Similarity=0.255 Sum_probs=33.8
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEE
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIV 66 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (194)
+.+++..++..++ ++|+.|||||||++.+.+. ..++.+.+.++|..
T Consensus 21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl--------~~p~~G~I~~~g~~ 67 (254)
T d1g6ha_ 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGF--------LKADEGRVYFENKD 67 (254)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTEE
T ss_pred cceEEEECCCCEEEEECCCCCcHHHHHHHHHCC--------CcCCCcEEEECCEe
Confidence 4455566666665 7899999999999999987 34556677666643
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=2.9e-05 Score=55.41 Aligned_cols=46 Identities=24% Similarity=0.371 Sum_probs=32.5
Q ss_pred HHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 12 LLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 12 ~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
++.+++..++. .++++|++|||||||++.+.+- ..++.+.+.++|.
T Consensus 30 L~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl--------~~p~~G~I~i~g~ 76 (251)
T d1jj7a_ 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL--------YQPTGGQLLLDGK 76 (251)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTE
T ss_pred EeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc--------cCCCcCEEEECCE
Confidence 34455554444 5668899999999999999987 3345566666654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=1.3e-05 Score=54.19 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++|+++|+|||||||+.+.|...
T Consensus 1 m~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 1 MRVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=97.66 E-value=2.7e-05 Score=55.23 Aligned_cols=44 Identities=18% Similarity=0.330 Sum_probs=32.3
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
.+++..++..++ ++|+.|||||||++.+.+- ..++.+.+.++|.
T Consensus 24 ~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl--------~~p~~G~I~~~G~ 68 (240)
T d1ji0a_ 24 GIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL--------VRAQKGKIIFNGQ 68 (240)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHTTS--------SCCSEEEEEETTE
T ss_pred eeeEEECCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCccEEEeccc
Confidence 344555555555 7899999999999999987 3456677777664
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=1.4e-05 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++|+++|+|||||||..+.|...
T Consensus 1 m~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 1 MRIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.0001 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.405 Sum_probs=18.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHc
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.-|+++|++||||||.+-.+..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~ 31 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLAR 31 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 44566789999999999988773
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.63 E-value=2.1e-05 Score=55.68 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=33.7
Q ss_pred HhCCcCCCC-eEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEE
Q psy2159 14 RLGLWKKSG-KLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVF 67 (194)
Q Consensus 14 ~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (194)
.+++..++. .+.++|++|||||||++.+.+- ..++.+.+.+++..+
T Consensus 23 ~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl--------~~p~~G~I~~~g~~i 69 (242)
T d1oxxk2 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGL--------DVPSTGELYFDDRLV 69 (242)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTS--------SCCSEEEEEETTEEE
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHHcC--------cCCCCceEEECCEEe
Confidence 444555555 4558899999999999999987 345667777777654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.63 E-value=1.6e-05 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..|+++|+|||||||+++.|...
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3446678899999999999999865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.62 E-value=1.7e-05 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++|+++|+|||||||+.+.|...
T Consensus 2 ~mrIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 2 SIRMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999999864
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.61 E-value=1.5e-05 Score=52.08 Aligned_cols=21 Identities=19% Similarity=0.320 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++.|+|||||||+++.+...
T Consensus 5 Iii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 5 ILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 456699999999999998653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=0.0001 Score=53.24 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=48.2
Q ss_pred CCCCeE-EEEcCCCCChHHHHHHHHcCCCC-ccc-----cCCCcceeEEEe---CCEEEEEEEcCCCccchh--------
Q psy2159 19 KKSGKL-LFLGLDNAGKTFLLQMLKNDRTA-QHM-----PTLHPTSEELSM---GDIVFTTHDLGGHVQARR-------- 80 (194)
Q Consensus 19 ~~~~~i-~v~G~~~~GKStli~~~~~~~~~-~~~-----~t~~~~~~~~~~---~~~~~~~~d~~g~~~~~~-------- 80 (194)
..++.| .++|+.++|||+|+|.+++.... ... .|.|.-...... .+..+.++||.|......
T Consensus 29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~~~~~~~~~~~ 108 (277)
T d1f5na2 29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSW 108 (277)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHH
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccccccccchhHHH
Confidence 334444 47899999999999999987643 222 244443222222 346889999999653211
Q ss_pred hHhhhhhcCCEEEEEEECC
Q psy2159 81 VWRDYFPAVDAIVFIIDAS 99 (194)
Q Consensus 81 ~~~~~~~~~d~ii~v~d~~ 99 (194)
+.....--++.+||-....
T Consensus 109 i~~l~~llSs~~i~N~~~~ 127 (277)
T d1f5na2 109 IFALAVLLSSTFVYNSIGT 127 (277)
T ss_dssp HHHHHHHHCSEEEEEEESC
T ss_pred HHHHHHHHhCEEEEecccc
Confidence 1122223467777766543
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=97.58 E-value=4.7e-05 Score=53.86 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=30.9
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCC
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGD 64 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (194)
.+++..++..++ ++|+.|||||||++.+.+- ..++.+.+.+.|
T Consensus 20 ~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~--------~~p~~G~i~i~G 63 (238)
T d1vpla_ 20 GISFEIEEGEIFGLIGPNGAGKTTTLRIISTL--------IKPSSGIVTVFG 63 (238)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETT
T ss_pred cceeEEcCCCEEEEECCCCCCHHHHHHHHhcC--------CCCCCCEEEECc
Confidence 344455555555 8899999999999999987 334556666655
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.58 E-value=1.7e-05 Score=52.78 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=18.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++.|+|||||||+++.|...
T Consensus 5 I~i~G~~GsGKTTva~~L~~~ 25 (176)
T d2bdta1 5 YIITGPAGVGKSTTCKRLAAQ 25 (176)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567799999999999999864
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=2e-05 Score=53.82 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.|+++|+|||||||..+.+...
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=97.56 E-value=4.4e-05 Score=54.64 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=34.5
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEE
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTT 69 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 69 (194)
.+++..++..++ ++|+.|||||||++.+.+- ..++.+.+.++|..+.-
T Consensus 20 ~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl--------~~p~~G~I~~~G~~i~~ 68 (258)
T d1b0ua_ 20 GVSLQARAGDVISIIGSSGSGKSTFLRCINFL--------EKPSEGAIIVNGQNINL 68 (258)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHTTS--------SCCSEEEEEETTEECCE
T ss_pred ceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC--------ccCCCCCEEECCEEecc
Confidence 344444555554 8899999999999999986 33566788888765543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.9e-05 Score=51.91 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+++|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~ 25 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQ 25 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999865
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.52 E-value=2e-05 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+...|++.||||+|||++++.+...
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHhhc
Confidence 4456888899999999999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.51 E-value=5.5e-05 Score=54.84 Aligned_cols=34 Identities=32% Similarity=0.444 Sum_probs=25.9
Q ss_pred HHHHhCCcCCCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.+++..++. .++++|+.|||||||++.+.+.
T Consensus 51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl 85 (281)
T d1r0wa_ 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGE 85 (281)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence 345566555554 4558899999999999999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.50 E-value=3.7e-05 Score=54.92 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHhCCcC-CCCeEEEEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCE
Q psy2159 13 LRLGLWK-KSGKLLFLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDI 65 (194)
Q Consensus 13 ~~~~~~~-~~~~i~v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (194)
..+++.. +.-.++++|++|||||||++.+.+- ..++.+.+.+++.
T Consensus 35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl--------~~p~~G~I~i~g~ 80 (255)
T d2hyda1 35 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRF--------YDVTSGQILIDGH 80 (255)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS--------SCCSEEEEEETTE
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc--------CCccccccccCCE
Confidence 3444444 3346778899999999999998876 2344455555553
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.50 E-value=2.5e-05 Score=52.04 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+|+++|++||||||+.+.+...
T Consensus 2 p~IvliG~~G~GKSTig~~La~~ 24 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKA 24 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988754
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.48 E-value=2.9e-05 Score=51.69 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=18.2
Q ss_pred eEE-EEcCCCCChHHHHHHHHc
Q psy2159 23 KLL-FLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~-v~G~~~~GKStli~~~~~ 43 (194)
||+ |+|.+|||||||++++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~ 23 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVA 23 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 454 889999999999998875
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.47 E-value=4.1e-05 Score=51.13 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+.+-|.++|.+||||||+.+.|...
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~ 29 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVT 29 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34556778899999999999988753
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.47 E-value=4.2e-05 Score=54.71 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+.-|++.||||+||||+++.+.+.
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~ 55 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEE 55 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34445778899999999999999875
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.45 E-value=2.9e-05 Score=52.08 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|++.|++|+|||||+..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5788899999999999988853
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=5.3e-05 Score=50.88 Aligned_cols=25 Identities=20% Similarity=0.287 Sum_probs=19.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.=|+++|.|||||||+++.+...
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4445556799999999999998653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.41 E-value=5.2e-05 Score=50.33 Aligned_cols=25 Identities=12% Similarity=0.396 Sum_probs=19.8
Q ss_pred CCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
...+|+ ++|++||||||+.+.|...
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~ 29 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQ 29 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555 5699999999999998864
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.40 E-value=3.8e-05 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.668 Sum_probs=19.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
+|+++|++||||||+.+.+...
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~ 23 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKD 23 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=97.36 E-value=0.00013 Score=51.25 Aligned_cols=38 Identities=26% Similarity=0.314 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 7 KFREVLLRLGL-WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+...... ..+...+++.||||+||||+++.+.+.
T Consensus 20 ~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 20 KLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp HHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34444444332 234567889999999999999999864
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.35 E-value=5.5e-05 Score=50.35 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++.|++||||||+.+.+...
T Consensus 7 I~l~G~~GsGKSTia~~La~~ 27 (176)
T d1zp6a1 7 LLLSGHPGSGKSTIAEALANL 27 (176)
T ss_dssp EEEEECTTSCHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 446699999999999999865
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.33 E-value=6.6e-05 Score=51.21 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=19.8
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.-|+++|+|||||||+++.|...
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34668899999999999999875
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.31 E-value=5.9e-05 Score=50.62 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=17.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
|++.|++||||||+++.|..
T Consensus 4 I~i~G~~GsGKsT~~~~L~~ 23 (190)
T d1khta_ 4 VVVTGVPGVGSTTSSQLAMD 23 (190)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 55669999999999998864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.30 E-value=8.5e-05 Score=50.67 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|+++|+|||||||+...|...
T Consensus 10 iI~i~GppGSGKsT~a~~La~~ 31 (196)
T d1ukza_ 10 VIFVLGGPGAGKGTQCEKLVKD 31 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4556799999999999999875
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.29 E-value=6.5e-05 Score=51.60 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=27.5
Q ss_pred cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCC
Q psy2159 88 AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKID 133 (194)
Q Consensus 88 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D 133 (194)
..++.++++|.... ....+..+..+... .+.+++++.++++
T Consensus 83 ~~~~~~vi~d~~~~--~~~~r~~~~~~~~~---~~~~~~~~~~~~~ 123 (213)
T d1bifa1 83 EEGGHVAVFDATNT--TRERRAMIFNFGEQ---NGYKTFFVESICV 123 (213)
T ss_dssp TTCCSEEEEESCCC--SHHHHHHHHHHHHH---HTCEEEEEEECCC
T ss_pred hcCCCEEEeecCCc--cHHHHHHHHHHHHh---cCCeEEEEEeecc
Confidence 34566777888774 45666666666654 4567788877775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=0.00012 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
....+++.||||+||||+++.+...
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHhc
Confidence 4457889999999999999999865
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.28 E-value=7.2e-05 Score=50.41 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.2
Q ss_pred CeEEE-EcCCCCChHHHHHHHHc
Q psy2159 22 GKLLF-LGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v-~G~~~~GKStli~~~~~ 43 (194)
+||++ .|.+||||||+++.+..
T Consensus 1 mkiivi~G~~GsGKTT~~~~La~ 23 (194)
T d1nksa_ 1 MKIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36665 59999999999998864
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.26 E-value=6.9e-05 Score=49.82 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=18.4
Q ss_pred eEE-EEcCCCCChHHHHHHHHcC
Q psy2159 23 KLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+++ +.|++||||||+.+.|...
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~ 26 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 445 5599999999999999874
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.25 E-value=7.1e-05 Score=50.52 Aligned_cols=21 Identities=19% Similarity=0.456 Sum_probs=17.9
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+||||||+++.+...
T Consensus 5 ivl~GpsG~GK~tl~~~L~~~ 25 (182)
T d1znwa1 5 VVLSGPSAVGKSTVVRCLRER 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 456699999999999999754
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.24 E-value=7.8e-05 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+||||+||+++|...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~ 24 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999764
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.24 E-value=7.8e-05 Score=49.74 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+++|++||||||+.+.+...
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788899999999999999753
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.19 E-value=0.00026 Score=47.84 Aligned_cols=24 Identities=33% Similarity=0.267 Sum_probs=19.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++=|+|.|++|||||||.+.|..
T Consensus 21 ~~~iIgI~G~~GSGKSTla~~L~~ 44 (198)
T d1rz3a_ 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (198)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 344566889999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=4.8e-05 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=20.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+..-|+++|+|||||||+.+.|...
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456667899999999999999753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.13 E-value=0.00012 Score=49.85 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=18.7
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+||||||+++.|...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998653
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.12 E-value=0.00042 Score=51.07 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+|+|.|++||||||+++.+...
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGG
T ss_pred CCCEEEEeeccccchHHHHHHhhh
Confidence 347999999999999999999975
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.00013 Score=49.24 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+++||+||||+||+++|...
T Consensus 6 ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 6 LVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 778899999999999999854
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.11 E-value=0.00033 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...+++.||+|+||||+++.+...
T Consensus 45 ~~~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 45 MPHLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 346888899999999999998864
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.11 E-value=0.00017 Score=49.96 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=21.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+.|++.|||||||||..+.|...
T Consensus 2 k~i~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 2 KTIQIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3467888899999999999999875
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=97.10 E-value=0.00031 Score=49.84 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.|++|+|||++++.+...
T Consensus 41 ~~~~~lll~GppGtGKT~l~~~l~~~ 66 (276)
T d1fnna2 41 HHYPRATLLGRPGTGKTVTLRKLWEL 66 (276)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 34457888899999999999988853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=0.00019 Score=49.54 Aligned_cols=24 Identities=13% Similarity=-0.032 Sum_probs=20.6
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++-|++.|++||||||+.+.|...
T Consensus 2 P~iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 2 PFLIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 556889999999999999988754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00015 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=18.0
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++++||+|||||||++.+...
T Consensus 5 ivi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 5 YIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 456699999999999999864
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00011 Score=51.62 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=24.5
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
+.+++..++..++ ++|+.|||||||++.+.+-
T Consensus 16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp CSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3445555555555 7799999999999999985
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.97 E-value=0.00021 Score=52.47 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.1
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++..+++.||||||||.|++++...
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhc
Confidence 5567889999999999999999874
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.96 E-value=0.00029 Score=47.69 Aligned_cols=27 Identities=15% Similarity=0.072 Sum_probs=22.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
.++-|++.|.+||||||+++.|....+
T Consensus 2 ~p~IIgitG~~gSGKstva~~l~~~g~ 28 (191)
T d1uf9a_ 2 HPIIIGITGNIGSGKSTVAALLRSWGY 28 (191)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHTTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
Confidence 466788999999999999999876543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.94 E-value=0.0083 Score=39.11 Aligned_cols=54 Identities=22% Similarity=0.130 Sum_probs=33.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHcCCCC---ccccCCCcceeEEEeCCEEEEEEEcCCCc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKNDRTA---QHMPTLHPTSEELSMGDIVFTTHDLGGHV 76 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~d~~g~~ 76 (194)
.-|++-|+-|||||||++.+...--. ..+||-... .....++..+.-+|.--..
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~-~~Y~~~~~~i~H~DlYRl~ 90 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLV-EEYNIAGKMIYHFDLYRLA 90 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCE-EEEEETTEEEEEEECTTCS
T ss_pred eEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEE-EeeccCCceEEEEEEeccC
Confidence 34556699999999999998865322 234443332 3344556666666775433
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0006 Score=46.34 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=25.4
Q ss_pred HHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 9 REVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+.+.+.+. -...-+++++|+||+|||+++..+...
T Consensus 32 ~~l~~iL~-r~~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 32 RRTIQVLQ-RRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp HHHHHHHT-SSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCCCeEEEecCCcccHHHHHHHHHH
Confidence 34444443 234458999999999999999988864
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.90 E-value=0.00054 Score=48.54 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=25.0
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++..+. ..+..+++.||||+|||++++.+...
T Consensus 33 ~~~~~g~-~~~~giLl~GppGtGKT~la~aia~~ 65 (247)
T d1ixza_ 33 RFHEMGA-RIPKGVLLVGPPGVGKTHLARAVAGE 65 (247)
T ss_dssp HHHHTTC-CCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHcCC-CCCceEEEecCCCCChhHHHHHHHHH
Confidence 3444442 34456889999999999999999974
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00031 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.3
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.||||+||||+++.+++.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~ 75 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQE 75 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999999975
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.00031 Score=48.44 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
++.+.+.+...+.+..+++.|++|+||||++..+..
T Consensus 11 ~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 11 FEKLVASYQAGRGHHALLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp HHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHH
Confidence 444555555455566689999999999999998776
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00055 Score=47.51 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=19.7
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.||+|+||||+++.+...
T Consensus 37 ~~~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 37 PHMIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCchhhHHHHHHH
Confidence 45888899999999999988753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.85 E-value=0.00025 Score=48.13 Aligned_cols=27 Identities=22% Similarity=0.161 Sum_probs=22.4
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++-|+|-|..||||||+++.|...
T Consensus 6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~ 32 (197)
T d2vp4a1 6 GTQPFTVLIEGNIGSGKTTYLNHFEKY 32 (197)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456667778899999999999998864
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.00044 Score=48.68 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+++.||+|+||||+++.+...
T Consensus 31 ~~~~~lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 31 RDLPHLLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp TCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHh
Confidence 34446889999999999999988763
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.00065 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.451 Sum_probs=25.0
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+.. ++..+++.||||+|||++++.+...
T Consensus 29 ~~~~~g~~-~~~giLL~GppGtGKT~l~~ala~~ 61 (258)
T d1e32a2 29 LFKAIGVK-PPRGILLYGPPGTGKTLIARAVANE 61 (258)
T ss_dssp HHHHCCCC-CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCCCC-CCceeEEecCCCCCchHHHHHHHHH
Confidence 44444533 4456888899999999999999975
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=96.80 E-value=0.0006 Score=48.56 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=16.6
Q ss_pred EEcCCCCChHHHHHHHHcC
Q psy2159 26 FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 26 v~G~~~~GKStli~~~~~~ 44 (194)
+.|+||+|||++++.+...
T Consensus 51 l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 51 SIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp CTTCCSSSHHHHHHHHHHH
T ss_pred eECCCCCCHHHHHHHHHHH
Confidence 4499999999999998864
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.79 E-value=0.00076 Score=46.95 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+++.||+|+||||+++.+...
T Consensus 34 ~~lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCChHHHHHHHHHH
Confidence 35888899999999999999864
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.77 E-value=0.00077 Score=46.74 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.||+|+||||+++.+...
T Consensus 37 ~lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 37 HLLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHH
Confidence 5888899999999999999864
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=0.00034 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|++.|||||||||....|...
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3556699999999999999876
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.75 E-value=0.001 Score=47.55 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=26.0
Q ss_pred HHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+....+.+. -...-+++++|+||+|||++++.+...
T Consensus 27 i~~l~~iL~-r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 27 LERAIQVLC-RRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp HHHHHHHHT-SSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 344444443 233458999999999999999988764
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.75 E-value=0.00051 Score=47.37 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=20.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+..-|.+.|.|||||||+.+.|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4555677889999999999999874
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.0018 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=20.2
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..+..+++.|++|+||||+++.+..
T Consensus 32 ~~~~~~Ll~Gp~G~GKtt~a~~~~~ 56 (239)
T d1njfa_ 32 RIHHAYLFSGTRGVGKTSIARLLAK 56 (239)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHH
Confidence 3344578889999999999998765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.00062 Score=48.46 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+..+++.||||+|||++++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHH
Confidence 3456888899999999999999864
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=96.56 E-value=0.001 Score=50.11 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=19.4
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
..-+++++|+||+|||+++..+..
T Consensus 42 ~k~n~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 42 TKNNPVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCCCeEECCCCCCHHHHHHHHHH
Confidence 444679999999999999976664
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.55 E-value=0.00062 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.+++.|++|+|||||++++..
T Consensus 31 ~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 31 ITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 566779999999999998875
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.49 E-value=0.0013 Score=47.00 Aligned_cols=33 Identities=33% Similarity=0.627 Sum_probs=24.9
Q ss_pred HHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 11 VLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 11 ~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.....+. .++..+++.|++|+|||++++++...
T Consensus 32 ~~~~~g~-~~~~giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 32 KFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp HHHHCCC-CCCCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred HHHhCCC-CCCCeEEEECCCCCcchhHHHHHHHH
Confidence 3344442 34556888899999999999999876
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.001 Score=45.92 Aligned_cols=66 Identities=17% Similarity=0.041 Sum_probs=36.9
Q ss_pred CEEEEEEEcCCCccchhh----Hhhh---hh-----cCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeC
Q psy2159 64 DIVFTTHDLGGHVQARRV----WRDY---FP-----AVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNK 131 (194)
Q Consensus 64 ~~~~~~~d~~g~~~~~~~----~~~~---~~-----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK 131 (194)
+..+.++||+|....... ...+ .. ..+-.++|+|.+.. .............. .+-=+++||
T Consensus 93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~-----~~~~lI~TK 165 (213)
T d1vmaa2 93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVTGIILTK 165 (213)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCCEEEEEC
T ss_pred CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhcccc-----CCceEEEec
Confidence 456899999995533321 1111 11 14678999998662 33333333333211 234688999
Q ss_pred CCCCC
Q psy2159 132 IDIFD 136 (194)
Q Consensus 132 ~D~~~ 136 (194)
.|...
T Consensus 166 lDe~~ 170 (213)
T d1vmaa2 166 LDGTA 170 (213)
T ss_dssp GGGCS
T ss_pred ccCCC
Confidence 99754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.45 E-value=0.00074 Score=51.89 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.9
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.+|+++||+|||||-|+++|.+
T Consensus 48 ~ksNILliGPTGvGKTlLAr~LAk 71 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIARRLAK 71 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccccEEEECCCCCCHHHHHHHHHH
Confidence 456999999999999999999986
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=96.43 E-value=0.0015 Score=48.87 Aligned_cols=22 Identities=36% Similarity=0.315 Sum_probs=18.9
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.||||+|||++++.+.+.
T Consensus 156 ~~~~~g~~~~gk~~~~~~~~~~ 177 (362)
T d1svma_ 156 YWLFKGPIDSGKTTLAAALLEL 177 (362)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5567799999999999999864
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.40 E-value=0.0021 Score=46.29 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~ 42 (194)
.+++=|++.|++||||||+...+.
T Consensus 25 ~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 25 KCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEEeECCCCCCHHHHHHHHH
Confidence 456677789999999999998664
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.0019 Score=47.06 Aligned_cols=26 Identities=15% Similarity=0.117 Sum_probs=21.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.++=|+|.|++||||||+.+.|..
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence 45677888999999999999887754
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.33 E-value=0.00099 Score=45.42 Aligned_cols=21 Identities=33% Similarity=0.502 Sum_probs=18.0
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
-|+|-|..||||||+++.|..
T Consensus 2 lI~ieG~dGsGKST~~~~L~~ 22 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSG 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367779999999999998774
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.29 E-value=0.0012 Score=45.46 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=41.2
Q ss_pred CCEEEEEEEcCCCccchh------hHhhh--hhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEEEEeeCCCC
Q psy2159 63 GDIVFTTHDLGGHVQARR------VWRDY--FPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPILILGNKIDI 134 (194)
Q Consensus 63 ~~~~~~~~d~~g~~~~~~------~~~~~--~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~ 134 (194)
.+..+.++||+|...+.. ....+ ....+-+++|+|++.. .+........... .+ +-=+++||.|.
T Consensus 93 ~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~~~~~----~~-~~~lI~TKlDe 165 (211)
T d1j8yf2 93 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQA----SK-IGTIIITKMDG 165 (211)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHHH----CT-TEEEEEECTTS
T ss_pred cCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccC--cchHHHHhhhhcc----cC-cceEEEecccC
Confidence 346799999999643321 11111 2235788999998763 2333332222211 11 23477999997
Q ss_pred CCCCCHHHHHhhhc
Q psy2159 135 FDAASEDEVRHFFG 148 (194)
Q Consensus 135 ~~~~~~~e~~~~~~ 148 (194)
.. ..=.+.+...
T Consensus 166 t~--~~G~~l~~~~ 177 (211)
T d1j8yf2 166 TA--KGGGALSAVA 177 (211)
T ss_dssp CS--CHHHHHHHHH
T ss_pred CC--cccHHHHHHH
Confidence 54 3334444443
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.28 E-value=0.0015 Score=44.66 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=20.0
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~~~ 46 (194)
-|++.|..||||||+++.|....+
T Consensus 4 iIgITG~igSGKStv~~~l~~~G~ 27 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDLGV 27 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
Confidence 467899999999999998876543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.0013 Score=45.17 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=19.6
Q ss_pred EEEEcCCCCChHHHHHHHHcCCC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKNDRT 46 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~~~ 46 (194)
|+++|..||||||+++.|....+
T Consensus 6 IgitG~igSGKStv~~~l~~~G~ 28 (208)
T d1vhta_ 6 VALTGGIGSGKSTVANAFADLGI 28 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTC
T ss_pred EEEECCCcCCHHHHHHHHHHCCC
Confidence 56889999999999999886544
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.00085 Score=46.77 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.|+|-|+.||||||+++.|...
T Consensus 4 ~I~ieG~dGsGKST~~~~L~~~ 25 (241)
T d1p5zb_ 4 KISIEGNIAAGKSTFVNILKQL 25 (241)
T ss_dssp EEEEECSTTSSHHHHHTTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3556699999999999998864
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0019 Score=43.90 Aligned_cols=32 Identities=22% Similarity=0.168 Sum_probs=23.5
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
..++...++.++. +.|+||+|||+|+..+..+
T Consensus 14 ~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 14 KLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp HHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3344455556565 6699999999999988854
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=96.16 E-value=0.0028 Score=43.03 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=19.6
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++.-.+++.||+++|||+++..+..-
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~ 76 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHF 76 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 34444556699999999999987753
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.08 E-value=0.0041 Score=42.75 Aligned_cols=36 Identities=33% Similarity=0.436 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 7 KFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 7 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++.+.+..+...+ .+.+.|++|+|||.|++.++..
T Consensus 24 ~~~~~~~~~~~~~n--~l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 24 VVKEALENLGSLYN--PIFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp HHHHHHHTTTTSCS--SEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCCC--cEEEECCCCCcHHHHHHHHHHH
Confidence 44555544332212 2678899999999999998864
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=96.06 E-value=0.0018 Score=48.35 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..+++++||+|||||-+.++|...
T Consensus 65 ~~p~~niLfiGPTGvGKTElAk~LA~~ 91 (364)
T d1um8a_ 65 ELSKSNILLIGPTGSGKTLMAQTLAKH 91 (364)
T ss_dssp TCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCcceeeeCCCCccHHHHHHHHHhh
Confidence 457788999999999999999998764
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0016 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.483 Sum_probs=16.7
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
|++-|..||||||+++.|..
T Consensus 5 IviEG~dGsGKsT~~~~L~~ 24 (210)
T d4tmka_ 5 IVIEGLEGAGKTTARNVVVE 24 (210)
T ss_dssp EEEEECTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44559999999999998774
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.05 E-value=0.0018 Score=44.90 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=23.0
Q ss_pred HhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
.++...++.++. +.|+||+|||+|+..+...
T Consensus 26 ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 26 LLGGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp HHTSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred hhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344455666565 5599999999999988754
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.03 E-value=0.0029 Score=47.92 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=22.8
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+..=|++.|+.||||||++..+...
T Consensus 155 ~~~~GliLvtGpTGSGKSTTl~~~l~~ 181 (401)
T d1p9ra_ 155 KRPHGIILVTGPTGSGKSTTLYAGLQE 181 (401)
T ss_dssp TSSSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred hhhhceEEEEcCCCCCccHHHHHHhhh
Confidence 456667888899999999999998874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0019 Score=45.01 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|+|=|..||||||+++.|...
T Consensus 5 IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 5 LSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 445599999999999999864
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.0047 Score=45.12 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=19.6
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++++||+|+|||.|++.+...
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhh
Confidence 6778899999999999998864
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.94 E-value=0.0013 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=17.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.++.=|+|.|++||||||+.+.|..
T Consensus 2 ~k~pIIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 2 KKHPIISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHH
Confidence 3455688999999999999997654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.84 E-value=0.0043 Score=43.24 Aligned_cols=30 Identities=27% Similarity=0.194 Sum_probs=23.0
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
++...+.-+++ |.|+||+|||+|.-.+...
T Consensus 29 l~GGlp~G~~~li~G~pGsGKT~~~lq~~~~ 59 (254)
T d1pzna2 29 LGGGIETQAITEVFGEFGSGKTQLAHTLAVM 59 (254)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 44456666666 5599999999999988754
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0025 Score=43.77 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=16.0
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
|+|-|+.||||||+++.|..
T Consensus 6 I~ieG~dGsGKsT~~~~L~~ 25 (209)
T d1nn5a_ 6 IVLEGVDRAGKSTQSRKLVE 25 (209)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 44559999999998887754
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0064 Score=42.28 Aligned_cols=31 Identities=29% Similarity=0.087 Sum_probs=24.4
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHc
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~ 43 (194)
..++...++.++. |.|+||+|||+|..++..
T Consensus 28 ~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 28 KLLGGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp HHTTSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred HhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4455567777766 559999999999999875
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.76 E-value=0.0013 Score=48.37 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=19.9
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
..+++.|+||+|||++++++..
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~ 50 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAA 50 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHH
T ss_pred CeEEEECCCCccHHHHHHHHHH
Confidence 4799999999999999999864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.75 E-value=0.0037 Score=43.29 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=24.2
Q ss_pred HHhCCcCCCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 13 LRLGLWKKSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 13 ~~~~~~~~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
..++...++..+. |.|+||+|||+|+..++..
T Consensus 25 ~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 25 SVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp HHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3445456666666 5599999999999998864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.64 E-value=0.0051 Score=42.66 Aligned_cols=31 Identities=23% Similarity=0.220 Sum_probs=22.1
Q ss_pred HhCCcCCCCeE-EEEcCCCCChHHHHHHHHcC
Q psy2159 14 RLGLWKKSGKL-LFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 14 ~~~~~~~~~~i-~v~G~~~~GKStli~~~~~~ 44 (194)
.++...+...+ ++.|+||+|||+|+..+...
T Consensus 18 ~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 18 MCGGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp HTTSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred hhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34434444444 46699999999999988764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.53 E-value=0.0028 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=18.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
.+++.|+||+|||.+.+.+...
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHH
Confidence 3445699999999999999864
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.48 E-value=0.0047 Score=41.12 Aligned_cols=25 Identities=24% Similarity=0.183 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
..-+++.|++|+||||+.-.+....
T Consensus 15 g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 15 GVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3457888999999999999988753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.45 E-value=0.0045 Score=41.21 Aligned_cols=25 Identities=20% Similarity=0.096 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
..-+++.|++|+||||+.-.+....
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence 3457888999999999999988753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.00074 Score=45.50 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.8
Q ss_pred EEEcCCCCChHHHHHHHH
Q psy2159 25 LFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 25 ~v~G~~~~GKStli~~~~ 42 (194)
+++|+.||||||++.++.
T Consensus 28 vi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 28 TLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp HHHSCCSHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHH
Confidence 456999999999999875
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=95.34 E-value=0.012 Score=41.98 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.2
Q ss_pred eEEEEcCCCCChHHHHHHHHcC
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~~ 44 (194)
-|++.|.+|+|||||+..+.+.
T Consensus 46 ~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 46 FLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4457799999999999988653
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.28 E-value=0.0035 Score=45.22 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=15.9
Q ss_pred EEEcCCCCChHHHHHHHH
Q psy2159 25 LFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 25 ~v~G~~~~GKStli~~~~ 42 (194)
+++|+.||||||+++++.
T Consensus 28 vlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 28 AIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEECCTTTCSTHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHH
Confidence 577999999999999874
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.09 E-value=0.006 Score=42.41 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=17.8
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
|++.|..||||||..+.|..
T Consensus 4 IgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56889999999999999965
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.06 E-value=0.0063 Score=41.76 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
|++-|..||||||+++.|...
T Consensus 6 I~iEG~DGsGKST~~~~L~~~ 26 (214)
T d1tmka_ 6 ILIEGLDRTGKTTQCNILYKK 26 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 445599999999999988753
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.014 Score=42.53 Aligned_cols=25 Identities=36% Similarity=0.480 Sum_probs=19.9
Q ss_pred CCC-eEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSG-KLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~-~i~v~G~~~~GKStli~~~~~~ 44 (194)
++. .++++||+|+|||.+.+.+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCcchHHHHHHHHHHH
Confidence 344 5667799999999999988764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.98 E-value=0.0078 Score=39.74 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=20.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
...-+++.|++|+||||+.-.+...
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 3446788899999999999887765
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.87 E-value=0.0062 Score=43.66 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=14.6
Q ss_pred CCeEEEEcCCCCChHHHH
Q psy2159 21 SGKLLFLGLDNAGKTFLL 38 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli 38 (194)
...++|.|+||+||||.+
T Consensus 14 ~~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 14 TGPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SSEEEECCCTTSCHHHHH
T ss_pred CCCEEEEeeCCccHHHHH
Confidence 345788899999999764
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.043 Score=38.73 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=47.5
Q ss_pred HhC-CcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 14 RLG-LWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 14 ~~~-~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
.++ ...+.-+|. +.|++|+|||||+-.+..... -.+....++|+.+.-.-......-+ +.|-
T Consensus 45 ~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q---------------~~g~~~vyidtE~~~~~~~a~~~Gv-d~d~ 108 (263)
T d1u94a1 45 ALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---------------REGKTCAFIDAEHALDPIYARKLGV-DIDN 108 (263)
T ss_dssp HTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH---------------HTTCCEEEEESSCCCCHHHHHHTTC-CGGG
T ss_pred HhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH---------------cCCCEEEEEccccccCHHHHHHhCC-CHHH
Confidence 454 455666666 669999999999988775411 1234456788877543322211111 1233
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLAD 117 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~ 117 (194)
++ ++. +.+.++...++..+...
T Consensus 109 v~-~~~---~~~~E~~~~~i~~l~~~ 130 (263)
T d1u94a1 109 LL-CSQ---PDTGEQALEICDALARS 130 (263)
T ss_dssp CE-EEC---CSSHHHHHHHHHHHHHH
T ss_pred EE-Eec---CCCHHHHHHHHHHHHhc
Confidence 33 333 33566666666666553
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=94.81 E-value=0.014 Score=40.88 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=26.3
Q ss_pred HHHHHHHhC-CcCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 8 FREVLLRLG-LWKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 8 ~~~~~~~~~-~~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++..+++. .......|++.|++|+||+.+.+.+-..
T Consensus 9 ~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~ 46 (247)
T d1ny5a2 9 MKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKL 46 (247)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHh
Confidence 344444443 3455667899999999999999988643
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.72 E-value=0.0075 Score=43.61 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=14.9
Q ss_pred CCeEEEEcCCCCChHHHH
Q psy2159 21 SGKLLFLGLDNAGKTFLL 38 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli 38 (194)
...++|.|++||||||.+
T Consensus 24 ~g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 24 EGPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SSCEEEEECTTSCHHHHH
T ss_pred CCCEEEEecCCccHHHHH
Confidence 346889999999999765
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.58 E-value=0.0088 Score=44.83 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=16.4
Q ss_pred EEEEcCCCCChHHHHHHHH
Q psy2159 24 LLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~ 42 (194)
.+++|+.|||||+++.++.
T Consensus 28 ~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 28 TSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3577999999999999874
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=94.57 E-value=0.011 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.9
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
.++|.|=|+-||||||+++.+...
T Consensus 6 ~~rI~iEG~iGsGKSTl~~~L~~~ 29 (333)
T d1p6xa_ 6 IVRIYLDGVYGIGKSTTGRVMASA 29 (333)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred eEEEEEECCccCCHHHHHHHHHHH
Confidence 457888899999999999999864
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=94.55 E-value=0.034 Score=39.37 Aligned_cols=27 Identities=19% Similarity=0.404 Sum_probs=21.3
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
..+.--+.+.|++++|||+|++.+...
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~ 127 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHH
Confidence 345555667799999999999988864
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.50 E-value=0.014 Score=39.99 Aligned_cols=28 Identities=18% Similarity=0.068 Sum_probs=19.3
Q ss_pred hCCcCCCCeEE-EEcCCCCChHHHHHHHH
Q psy2159 15 LGLWKKSGKLL-FLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 15 ~~~~~~~~~i~-v~G~~~~GKStli~~~~ 42 (194)
++...++..+. +.|+||+|||+|+..++
T Consensus 19 l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 19 SHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp TTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred hcCCCcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 34334444454 66999999999987654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=94.49 E-value=0.0086 Score=43.95 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.8
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-++|.|=|.-||||||+++.+...
T Consensus 5 ~lrI~IEG~iGsGKSTl~~~L~~~ 28 (331)
T d1osna_ 5 VLRIYLDGAYGIGKTTAAEEFLHH 28 (331)
T ss_dssp EEEEEEEESSSSCTTHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457788899999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=94.46 E-value=0.011 Score=41.80 Aligned_cols=25 Identities=12% Similarity=0.248 Sum_probs=18.3
Q ss_pred CCCCeEE-EEcCCCCChHHHHHHHHc
Q psy2159 19 KKSGKLL-FLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 19 ~~~~~i~-v~G~~~~GKStli~~~~~ 43 (194)
.++..+. +.|+||+|||+|+..+..
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 3444444 669999999999887764
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.24 E-value=0.096 Score=36.98 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred HhC-CcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCCE
Q psy2159 14 RLG-LWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVDA 91 (194)
Q Consensus 14 ~~~-~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~ 91 (194)
.++ ...+..+|. +.|++++|||+|+-.+.... .-.+....++|+.+.-+.......-+ +.|-
T Consensus 48 ~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~a---------------qk~g~~v~yiDtE~~~~~~~a~~~Gv-d~d~ 111 (268)
T d1xp8a1 48 ALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA---------------QKAGGTCAFIDAEHALDPVYARALGV-NTDE 111 (268)
T ss_dssp HTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH---------------HHTTCCEEEEESSCCCCHHHHHHTTC-CGGG
T ss_pred HhcCCCccCceEEEEecCCccchHHHHHHHHHHH---------------HhCCCEEEEEECCccCCHHHHHHhCC-Cchh
Confidence 444 455666677 66999999999998877530 01234567888876433222111111 2233
Q ss_pred EEEEEECCCCCChHHHHHHHHHHHhC
Q psy2159 92 IVFIIDASDRSRFPESKYELDNLLAD 117 (194)
Q Consensus 92 ii~v~d~~~~~~~~~~~~~~~~~~~~ 117 (194)
++ ++. +.+.++....+..++..
T Consensus 112 i~-~~~---~~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 112 LL-VSQ---PDNGEQALEIMELLVRS 133 (268)
T ss_dssp CE-EEC---CSSHHHHHHHHHHHHTT
T ss_pred EE-EEc---CCCHHHHHHHHHHHHhc
Confidence 33 333 34566766667666543
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=94.03 E-value=0.012 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.183 Sum_probs=19.1
Q ss_pred CeEEEEcCCCCChHHHHHHHHcC
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~~ 44 (194)
++|.|=|+-||||||+++.+...
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~ 27 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVAL 27 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC-
T ss_pred eEEEEECCcCCCHHHHHHHHHHH
Confidence 46777799999999999998754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.82 E-value=0.17 Score=35.68 Aligned_cols=84 Identities=14% Similarity=0.107 Sum_probs=46.9
Q ss_pred HHhC-CcCCCCeEE-EEcCCCCChHHHHHHHHcCCCCccccCCCcceeEEEeCCEEEEEEEcCCCccchhhHhhhhhcCC
Q psy2159 13 LRLG-LWKKSGKLL-FLGLDNAGKTFLLQMLKNDRTAQHMPTLHPTSEELSMGDIVFTTHDLGGHVQARRVWRDYFPAVD 90 (194)
Q Consensus 13 ~~~~-~~~~~~~i~-v~G~~~~GKStli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d 90 (194)
..++ ...+..++. +.|++++|||+|+-.+.... .-.+....++|+.+.-.-.......+ +.|
T Consensus 50 ~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~---------------q~~g~~~vyIDtE~~~~~e~a~~~Gv-D~d 113 (269)
T d1mo6a1 50 VALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA---------------QAAGGVAAFIDAEHALDPDYAKKLGV-DTD 113 (269)
T ss_dssp HHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHH---------------HHTTCEEEEEESSCCCCHHHHHHHTC-CGG
T ss_pred HhhccCCcccceeEEEecCCCcHHHHHHHHHHHHH---------------hcCCCEEEEEECCccCCHHHHHHhCC-CHH
Confidence 3454 456666776 66999999999987666420 01234567779988443222211111 223
Q ss_pred EEEEEEECCCCCChHHHHHHHHHHHh
Q psy2159 91 AIVFIIDASDRSRFPESKYELDNLLA 116 (194)
Q Consensus 91 ~ii~v~d~~~~~~~~~~~~~~~~~~~ 116 (194)
-++ ++.. .+.++....+..+..
T Consensus 114 ~il-~~~~---~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 114 SLL-VSQP---DTGEQALEIADMLIR 135 (269)
T ss_dssp GCE-EECC---SSHHHHHHHHHHHHH
T ss_pred HeE-EecC---CCHHHHHHHHHHHHh
Confidence 333 3433 356676666666655
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.018 Score=40.54 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.3
Q ss_pred EEEEcCCCCChHHHHHHHHc
Q psy2159 24 LLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~ 43 (194)
.++.|++|+|||+|+-.+..
T Consensus 32 ~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 32 GALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 44669999999999987653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.017 Score=43.54 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=18.6
Q ss_pred CeEEEEcCCCCChHHHHHHHHc
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~~ 43 (194)
-+++|+|.+|||||+++..+..
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~ 72 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAY 72 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHH
Confidence 4589999999999999876664
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.022 Score=40.29 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.8
Q ss_pred CcCCCCeEEEE-cCCCCChHHHHHHHH
Q psy2159 17 LWKKSGKLLFL-GLDNAGKTFLLQMLK 42 (194)
Q Consensus 17 ~~~~~~~i~v~-G~~~~GKStli~~~~ 42 (194)
+..+..+|+++ |..|+||||+.-.|.
T Consensus 15 ~~~~~~~iii~sGKGGVGKTT~a~nLA 41 (279)
T d1ihua2 15 IARNEHGLIMLMGKGGVGKTTMAAAIA 41 (279)
T ss_dssp HHTTSCEEEEEECSTTSSHHHHHHHHH
T ss_pred hhcCCCEEEEEECCCCCCHHHHHHHHH
Confidence 34677788877 999999999755443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.47 E-value=0.022 Score=42.24 Aligned_cols=18 Identities=22% Similarity=0.150 Sum_probs=14.2
Q ss_pred eEEEEcCCCCChHHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQM 40 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~ 40 (194)
-.++.|+||+||||++..
T Consensus 165 ~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 165 ISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp EEEEECCTTSTHHHHHHH
T ss_pred eEEEEcCCCCCceehHHH
Confidence 455669999999998754
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.031 Score=34.47 Aligned_cols=26 Identities=12% Similarity=-0.066 Sum_probs=21.7
Q ss_pred cCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 18 WKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 18 ~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
.+.-+.|++.|.+|+||||+.+.|..
T Consensus 3 ~kqgf~i~~tg~~~~gk~~ia~al~~ 28 (122)
T d1g8fa3 3 PKQGFSIVLGNSLTVSREQLSIALLS 28 (122)
T ss_dssp GGCCEEEEECTTCCSCHHHHHHHHHH
T ss_pred CccceEEEEeCCCCCCHHHHHHHHHH
Confidence 34567888899999999999998853
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.032 Score=39.95 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.7
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+--|++++|++|+|||+|+..+..+
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 4558999999999999999988864
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=0.047 Score=37.79 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=17.3
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.|+..+||||+++.+.-.
T Consensus 44 ~iiTGpN~~GKSt~lk~i~l~ 64 (234)
T d1wb9a2 44 LIITGPNMGGKSTYMRQTALI 64 (234)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeccCchhhHHHHHHHHHH
Confidence 446699999999999987653
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=91.95 E-value=0.055 Score=38.31 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=15.0
Q ss_pred CeEE-EEcCCCCChHHHHHHHH
Q psy2159 22 GKLL-FLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 22 ~~i~-v~G~~~~GKStli~~~~ 42 (194)
.+++ +.|..|+||||+.-.+.
T Consensus 8 p~~i~~sGKGGVGKTTvaa~lA 29 (296)
T d1ihua1 8 PPYLFFTGKGGVGKTSISCATA 29 (296)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCcChHHHHHHHHH
Confidence 3444 55999999999655443
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.17 E-value=0.067 Score=36.74 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=17.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
+++.||..+||||+++++.-.
T Consensus 38 ~iiTGpN~~GKSt~lk~i~l~ 58 (224)
T d1ewqa2 38 VLITGPNMAGKSTFLRQTALI 58 (224)
T ss_dssp EEEESCSSSSHHHHHHHHHHH
T ss_pred EEEECCCccccchhhhhhHHH
Confidence 456699999999999987754
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=91.12 E-value=0.073 Score=37.27 Aligned_cols=71 Identities=10% Similarity=0.011 Sum_probs=37.0
Q ss_pred EEEEEEEcCCCccchh-hHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCCCC
Q psy2159 65 IVFTTHDLGGHVQARR-VWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDIFD 136 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~-~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~~~ 136 (194)
..+.+.|+|+...... ........+|.++++.+.+ ..++.........+.......+.++ -++.|+.+...
T Consensus 116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~-~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~ 188 (269)
T d1cp2a_ 116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN 188 (269)
T ss_dssp CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC
T ss_pred CCEEEeccCCccchhHHHHHHHhhccCceeeccchh-hhHHHHHHHHHHHHHhhccccceeccceEEeeecCCC
Confidence 4588889987543322 2222234578888777653 2334443333333322222234443 37889988655
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=90.55 E-value=0.13 Score=34.06 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.6
Q ss_pred EEEEcCCCCChHHHHHHHHcC
Q psy2159 24 LLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 24 i~v~G~~~~GKStli~~~~~~ 44 (194)
++|+|...||||.+...+...
T Consensus 2 iLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCccHHHHHHHHHhc
Confidence 578899999999999998854
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.67 E-value=0.12 Score=36.62 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=20.1
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-=|++++|++|+|||+|+..+..+
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHH
Confidence 347999999999999998887643
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=89.65 E-value=0.11 Score=32.30 Aligned_cols=25 Identities=12% Similarity=0.061 Sum_probs=17.8
Q ss_pred CCCeEE-EEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLL-FLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~-v~G~~~~GKStli~~~~~~ 44 (194)
...++. +.++.|+|||+++-.+...
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~~ 31 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYAA 31 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHT
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 345565 5699999999988655543
|
| >d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Azotobacter vinelandii [TaxId: 354]
Probab=89.01 E-value=0.14 Score=36.25 Aligned_cols=70 Identities=10% Similarity=0.015 Sum_probs=34.0
Q ss_pred EEEEEEEcCCCccchhh-HhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCC
Q psy2159 65 IVFTTHDLGGHVQARRV-WRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIF 135 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~-~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~ 135 (194)
+.+.++|+|+....... .......++.++++... +..+.......+..+.+.....+.++. ++.|+.+..
T Consensus 119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~ 190 (289)
T d2afhe1 119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD 190 (289)
T ss_dssp CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence 45778888765432221 11112346666666543 322344444444333332223455553 788987743
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.29 E-value=0.15 Score=34.12 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=20.8
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
....+++.|++|+|||+++..+..
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~ 37 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPE 37 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456888899999999999998775
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=87.98 E-value=0.18 Score=33.68 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.7
Q ss_pred CeEEEEcCC-CCChHHHHHHHHc
Q psy2159 22 GKLLFLGLD-NAGKTFLLQMLKN 43 (194)
Q Consensus 22 ~~i~v~G~~-~~GKStli~~~~~ 43 (194)
.++.|.|-. ||||||+.-.|..
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~ 24 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQ 24 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCccHHHHHHHHHH
Confidence 478888996 9999998876654
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=87.43 E-value=2.3 Score=28.22 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=46.7
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcEE-EEeeCCCCCCC-CCHHH
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPIL-ILGNKIDIFDA-ASEDE 142 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pii-iv~nK~D~~~~-~~~~e 142 (194)
+.+.++|+|+.... .....+..+|.++++...+. .+.......+..+ ++ .+.|++ +|+|+.+.... ...+.
T Consensus 112 ~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~~-~~---~~~~~~giv~N~~~~~~~~~~~~~ 184 (237)
T d1g3qa_ 112 FDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPEI-SCLTDTMKVGIVL-KK---AGLAILGFVLNRYGRSDRDIPPEA 184 (237)
T ss_dssp CSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSCH-HHHHHHHHHHHHH-HH---TTCEEEEEEEEEETSCTTCCCHHH
T ss_pred CCEEEEcccccccc--cchhhhhhhhcccccccccc-eecchhhHHHHHH-hh---hhhhhhhhhhcccccccchhhhHH
Confidence 46889999876532 33444667999999987643 2344544444443 32 466766 88999987653 33444
Q ss_pred HHhhh
Q psy2159 143 VRHFF 147 (194)
Q Consensus 143 ~~~~~ 147 (194)
.++..
T Consensus 185 ~~~~~ 189 (237)
T d1g3qa_ 185 AEDVM 189 (237)
T ss_dssp HHHHH
T ss_pred HHhhc
Confidence 44444
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=86.65 E-value=0.14 Score=36.79 Aligned_cols=14 Identities=50% Similarity=0.831 Sum_probs=12.1
Q ss_pred EEEcCCCCChHHHH
Q psy2159 25 LFLGLDNAGKTFLL 38 (194)
Q Consensus 25 ~v~G~~~~GKStli 38 (194)
++.|.+|+|||||-
T Consensus 18 lfFGLSGTGKTTLs 31 (313)
T d2olra1 18 VFFGLSGTGKTTLS 31 (313)
T ss_dssp EEECSTTSSHHHHH
T ss_pred EEEccCCCCcccce
Confidence 57799999999965
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.22 E-value=0.15 Score=36.78 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=12.4
Q ss_pred EEEEcCCCCChHHHH
Q psy2159 24 LLFLGLDNAGKTFLL 38 (194)
Q Consensus 24 i~v~G~~~~GKStli 38 (194)
-++.|.+|+|||||-
T Consensus 17 alffGLSGTGKTTLs 31 (318)
T d1j3ba1 17 AVFFGLSGTGKTTLS 31 (318)
T ss_dssp EEEEECTTSCHHHHT
T ss_pred EEEEccCCCCccccc
Confidence 357799999999964
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=85.92 E-value=2 Score=24.73 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.4
Q ss_pred CCCCeEEEEcCCCCChHHHHHHHHcCC
Q psy2159 19 KKSGKLLFLGLDNAGKTFLLQMLKNDR 45 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli~~~~~~~ 45 (194)
.+..++.++|=.|+|-|.|...+...-
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~~G 32 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLNEG 32 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHHHT
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHhCC
Confidence 466799999999999999999888763
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.68 E-value=0.3 Score=32.86 Aligned_cols=63 Identities=8% Similarity=0.010 Sum_probs=35.2
Q ss_pred EEEEEEEcCCCccchhhHhhhhhcCCEEEEEEECCCCCChHHHHHHHHHHHhCCCCCCCcE-EEEeeCCCC
Q psy2159 65 IVFTTHDLGGHVQARRVWRDYFPAVDAIVFIIDASDRSRFPESKYELDNLLADDALTDVPI-LILGNKIDI 134 (194)
Q Consensus 65 ~~~~~~d~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 134 (194)
+.+.++|+|+.... .....+..+|.+++|...+. .+.......+... +. .+.++ -+++|+.+.
T Consensus 110 ~D~viiD~~~~~~~--~~~~~l~~ad~v~~v~~~~~-~~~~~~~~~~~~~-~~---~~~~~~~iv~N~~~~ 173 (232)
T d1hyqa_ 110 TDILLLDAPAGLER--SAVIAIAAAQELLLVVNPEI-SSITDGLKTKIVA-ER---LGTKVLGVVVNRITT 173 (232)
T ss_dssp CSEEEEECCSSSSH--HHHHHHHHSSEEEEEECSSH-HHHHHHHHHHHHH-HH---HTCEEEEEEEEEECT
T ss_pred cceeeecccccccc--hhHHHhhhhheeeeeccccc-cchhhhhhhhhhh-hh---ccccccccccccccc
Confidence 34778888876533 23334567899999887643 2233333222222 22 23344 478899874
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.49 E-value=0.21 Score=35.43 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=20.0
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
+-=|++++|++|+|||+++..+...
T Consensus 67 ~GQr~~If~~~g~GKt~ll~~~~~~ 91 (285)
T d2jdia3 67 RGQRELIIGDRQTGKTSIAIDTIIN 91 (285)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEeecCCCCChHHHHHHHHHh
Confidence 3448899999999999998766543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.49 E-value=0.17 Score=30.91 Aligned_cols=20 Identities=30% Similarity=0.099 Sum_probs=14.7
Q ss_pred CCCCeEEEEcCCCCChHHHH
Q psy2159 19 KKSGKLLFLGLDNAGKTFLL 38 (194)
Q Consensus 19 ~~~~~i~v~G~~~~GKStli 38 (194)
.+..++++.+++|+|||..+
T Consensus 5 ~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 5 KKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp STTCEEEECCCTTSSTTTTH
T ss_pred HcCCcEEEEcCCCCChhHHH
Confidence 44556777799999999433
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=85.42 E-value=0.37 Score=38.54 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=23.4
Q ss_pred HHHHHHHHHhCCcCCCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 6 TKFREVLLRLGLWKKSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+..+.-.+++-...+.=.|++.|.+|||||.-.+.+..
T Consensus 71 ~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~ 108 (684)
T d1lkxa_ 71 ALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQ 108 (684)
T ss_dssp HHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 33333333333233333577889999999998876654
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=85.27 E-value=0.18 Score=36.39 Aligned_cols=15 Identities=47% Similarity=0.747 Sum_probs=12.9
Q ss_pred EEEEcCCCCChHHHH
Q psy2159 24 LLFLGLDNAGKTFLL 38 (194)
Q Consensus 24 i~v~G~~~~GKStli 38 (194)
-++.|.+|+|||||-
T Consensus 17 alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 17 TVFFGLSGTGKTTLS 31 (323)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEccCCCCcccce
Confidence 457799999999976
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.34 E-value=0.28 Score=34.65 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.2
Q ss_pred CCeEEEEcCCCCChHHHHHHHHcC
Q psy2159 21 SGKLLFLGLDNAGKTFLLQMLKND 44 (194)
Q Consensus 21 ~~~i~v~G~~~~GKStli~~~~~~ 44 (194)
-=|+.++|++|+|||+|+..+...
T Consensus 67 GQr~~Ifg~~g~GKt~l~~~~~~~ 90 (276)
T d1fx0a3 67 GQRELIIGDRQTGKTAVATDTILN 90 (276)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHT
T ss_pred CceEeeccCCCCChHHHHHHHHhh
Confidence 347889999999999998765443
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=81.98 E-value=0.63 Score=37.36 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=18.6
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.=.|++.|.+|||||.-.+.+..
T Consensus 124 ~nQsIiisGeSGaGKTe~~k~il~ 147 (712)
T d1d0xa2 124 QNQSLLITGESGAGKTENTKKVIQ 147 (712)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHHHHHHHHHH
Confidence 334677779999999998887654
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=81.97 E-value=0.34 Score=31.88 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.7
Q ss_pred eEEEEcCCCCChHHHHH
Q psy2159 23 KLLFLGLDNAGKTFLLQ 39 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~ 39 (194)
++++.+|.|+|||.+.-
T Consensus 25 n~lv~~pTGsGKT~i~~ 41 (200)
T d1wp9a1 25 NCLIVLPTGLGKTLIAM 41 (200)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred CeEEEeCCCCcHHHHHH
Confidence 57888999999997433
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.75 E-value=0.65 Score=37.28 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=17.4
Q ss_pred eEEEEcCCCCChHHHHHHHHc
Q psy2159 23 KLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 23 ~i~v~G~~~~GKStli~~~~~ 43 (194)
.|++.|.+|||||.-.+.+..
T Consensus 93 ~IiisGeSGaGKTe~~k~il~ 113 (710)
T d1br2a2 93 SILCTGESGAGKTENTKKVIQ 113 (710)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 577789999999998876654
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=81.61 E-value=0.64 Score=37.84 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=16.3
Q ss_pred CeEEEEcCCCCChHHHHHHHH
Q psy2159 22 GKLLFLGLDNAGKTFLLQMLK 42 (194)
Q Consensus 22 ~~i~v~G~~~~GKStli~~~~ 42 (194)
=.|++.|.+|||||.-.+.+.
T Consensus 124 QsIiisGeSGaGKTe~~K~il 144 (794)
T d2mysa2 124 QSILITGESGAGKTVNTKRVI 144 (794)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHH
Confidence 357788999999997666444
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=80.99 E-value=0.71 Score=37.16 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.=.|++.|.+|||||.-.+.+..
T Consensus 93 ~~Q~IiisGeSGsGKTe~~k~il~ 116 (730)
T d1w7ja2 93 RNQSIIVSGESGAGKTVSAKYAMR 116 (730)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 333677889999999998776654
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=80.76 E-value=0.52 Score=29.46 Aligned_cols=19 Identities=37% Similarity=0.419 Sum_probs=14.5
Q ss_pred EEEcCCCCChHH-HHHHHHc
Q psy2159 25 LFLGLDNAGKTF-LLQMLKN 43 (194)
Q Consensus 25 ~v~G~~~~GKSt-li~~~~~ 43 (194)
+++||=.||||| |++++.+
T Consensus 6 ~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 6 FITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp EEECSTTSCHHHHHHHHHHH
T ss_pred EEEccccCHHHHHHHHHHHH
Confidence 356999999999 6666543
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=80.04 E-value=0.72 Score=37.49 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=17.5
Q ss_pred CCCeEEEEcCCCCChHHHHHHHHc
Q psy2159 20 KSGKLLFLGLDNAGKTFLLQMLKN 43 (194)
Q Consensus 20 ~~~~i~v~G~~~~GKStli~~~~~ 43 (194)
+.=.|++.|.+|||||.-.+.+..
T Consensus 120 ~nQ~IiisGESGaGKTe~~K~il~ 143 (789)
T d1kk8a2 120 ENQSCLITGESGAGKTENTKKVIM 143 (789)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 344677779999999988655443
|