Psyllid ID: psy2163

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQKSRFD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHcccccccccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEccHcHHHccc
Coil and Loop (DISEMBL)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCakktevipmSFVLGFYVSLVVKRWWEqyrllpwpdTLALFVSAAIPGVVSVVFLIFPllqnyekkTVLIGLDHITYLQAhylsspmsFVLGFYVSLVVKRWWEqyrllpwpdTLALFVSAAIPGVVSVVFLIfpplqksrfd
Flexible Loop (DISEMBL)
wrgsvyklVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFpplqksrfd
Low Complexity Region (SEG)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQKSRFD
Disordered region (IsUnstruct)
***SVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPP*******
Disordered Region (DISOPRED)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQKS***
Disordered Region (DISEMBL)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQKSRFD
Disordered Region (DISPRO)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQK*R**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPPLQKSRFD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
O76090	585	Bestrophin-1 OS=Homo sapi	yes	N/A	0.494	0.158	0.559	5e-25
Q6UY87	585	Bestrophin-1 OS=Macaca fa	N/A	N/A	0.494	0.158	0.559	8e-25
Q6H1V1	669	Bestrophin-3 OS=Mus muscu	yes	N/A	0.611	0.171	0.460	9e-24
Q8NFU1	509	Bestrophin-2 OS=Homo sapi	no	N/A	0.494	0.182	0.516	4e-23
Q8BGM5	508	Bestrophin-2 OS=Mus muscu	no	N/A	0.494	0.183	0.516	4e-23
Q8N1M1	668	Bestrophin-3 OS=Homo sapi	no	N/A	0.611	0.172	0.452	7e-23
O88870	551	Bestrophin-1 OS=Mus muscu	no	N/A	0.494	0.168	0.526	4e-22
Q8NFU0	473	Bestrophin-4 OS=Homo sapi	no	N/A	0.5	0.198	0.436	3e-21
P34319	453	Uncharacterized protein C	no	N/A	0.5	0.207	0.404	2e-17
P34672	632	Uncharacterized protein Z	no	N/A	0.409	0.121	0.419	2e-16

>sp|O76090|BEST1_HUMAN Bestrophin-1 OS=Homo sapiens GN=BEST1 PE=1 SV=1

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 66/93 (70%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL++ E +++L+ YYII F YR AL E  Q +FE+L  YC    ++IP+SFVLG
Sbjct: 24  WRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct: 84  FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116

Forms calcium-sensitive chloride channels. Highly permeable to bicarbonate.
Homo sapiens (taxid: 9606)

>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1 PE=2 SV=1

 Score =  113 bits (282), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 65/93 (69%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL++ E  ++L+ YYII F YR AL E  Q +FE+L  YC    ++IP+SFVLG
Sbjct: 24  WRGSIYKLLYGEFFIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct: 84  FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Macaca fascicularis (taxid: 9541)

>sp|Q6H1V1|BEST3_MOUSE Bestrophin-3 OS=Mus musculus GN=Best3 PE=2 SV=1

 Score =  109 bits (273), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 74/115 (64%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL++RE +V+ V+Y  I+  YR  L  + +R FE+L  YC +  E IP++FVLG
Sbjct: 24  WRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGAQKRYFEKLSIYCDRYAEQIPVTFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLI 115
           FYV+LVV RWW Q+  LPWPD L L +S+++ G      L+   L  Y   T L+
Sbjct: 84  FYVTLVVNRWWNQFVNLPWPDRLMLLISSSVHGSDQHGRLLRRTLMRYVNLTSLL 138

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|Q8NFU1|BEST2_HUMAN Bestrophin-2 OS=Homo sapiens GN=BEST2 PE=2 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 63/93 (67%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL+WREL+ +L  Y  ++  YRF L E  +R FE+L  YC +   +IP+SFVLG
Sbjct: 24  WRGSIYKLLWRELLCFLGFYMALSAAYRFVLTEGQKRYFEKLVIYCDQYASLIPVSFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVV RWW QY  +P PD L   V+  + G
Sbjct: 84  FYVTLVVNRWWSQYLCMPLPDALMCVVAGTVHG 116

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|Q8BGM5|BEST2_MOUSE Bestrophin-2 OS=Mus musculus GN=Best2 PE=2 SV=1

 Score =  107 bits (267), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 48/93 (51%), Positives = 64/93 (68%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL+WREL+ +L +Y  ++  YRF L E  +R FE+L  YC +   +IP+SFVLG
Sbjct: 24  WRGSIYKLLWRELLCFLGLYMALSAAYRFLLAEEQKRYFEKLVIYCDQYASLIPVSFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVV RWW QY  +P PD L   V+  + G
Sbjct: 84  FYVTLVVHRWWNQYLCMPLPDALMCIVAGTVHG 116

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|Q8N1M1|BEST3_HUMAN Bestrophin-3 OS=Homo sapiens GN=BEST3 PE=2 SV=1

 Score =  107 bits (266), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 72/115 (62%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL++RE +V+ V+Y  I+  YR  L    +R FE+L  YC +  E IP++FVLG
Sbjct: 24  WRGSIYKLLYREFIVFAVLYTAISLVYRLLLTGVQKRYFEKLSIYCDRYAEQIPVTFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLI 115
           FYV+LVV RWW Q+  LPWPD L   +S+++ G      L+   L  Y   T L+
Sbjct: 84  FYVTLVVNRWWNQFVNLPWPDRLMFLISSSVHGSDEHGRLLRRTLMRYVNLTSLL 138

Forms calcium-sensitive (By similarity) chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|O88870|BEST1_MOUSE Bestrophin-1 OS=Mus musculus GN=Best1 PE=2 SV=3

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 64/93 (68%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL++ E +V++ +YY I   YR  L    Q LFE+L  YC    ++IP+SFVLG
Sbjct: 24  WRGSIYKLLYGEFLVFIFLYYSIRGLYRMVLSSDQQLLFEKLALYCDSYIQLIPISFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVV RWW QY  LPWPD L + VS+ + G
Sbjct: 84  FYVTLVVSRWWSQYENLPWPDRLMIQVSSFVEG 116

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Mus musculus (taxid: 10090)

>sp|Q8NFU0|BEST4_HUMAN Bestrophin-4 OS=Homo sapiens GN=BEST4 PE=2 SV=1

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 68/94 (72%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+YKL+++E +++  +Y +++ TYR  L +  + ++ ++ +YC +  ++IP+SFVLG
Sbjct: 24  WRGSIYKLLYKEFLLFGALYAVLSITYRLLLTQEQRYVYAQVARYCNRSADLIPLSFVLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
           FYV+LVV RWW QY  +P PD L   +SA++ GV
Sbjct: 84  FYVTLVVNRWWSQYTSIPLPDQLMCVISASVHGV 117

Forms calcium-sensitive chloride channels. Permeable to bicarbonate.

Homo sapiens (taxid: 9606)

>sp|P34319|YKT8_CAEEL Uncharacterized protein C07A9.8 OS=Caenorhabditis elegans GN=C07A9.8 PE=3 SV=2

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 65/94 (69%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS+++ V++EL+V++  Y +++  YRFAL  S + +FER  +YC  +   +P++FVLG
Sbjct: 67  WRGSLWQAVYKELIVWICAYSLVSVIYRFALTRSQKDIFERFGEYCDARMGYLPLNFVLG 126

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGV 94
           F+ +++++RW + Y  L   D +ALFVSA + G 
Sbjct: 127 FFCNIIIRRWLKLYTSLGNIDNIALFVSAYVRGT 160

Caenorhabditis elegans (taxid: 6239)

>sp|P34672|YO22_CAEEL Uncharacterized protein ZK688.2 OS=Caenorhabditis elegans GN=ZK688.2 PE=3 SV=1

 Score = 85.5 bits (210), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/93 (41%), Positives = 60/93 (64%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGS++K V  EL V+LV+Y I++  YR AL    QR FER+ +YC  +   IP++F+LG
Sbjct: 24  WRGSIWKAVILELAVWLVLYGILSVIYRTALNPGQQRTFERIVQYCDSRLSYIPLNFMLG 83

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           F+V+ VV RW   Y+++ + D + L  +  + G
Sbjct: 84  FFVTAVVNRWTYLYQIIGFIDNIGLMAAEYVRG 116

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
395398343	676	bestrophin 2 [Spodoptera littoralis]	0.510	0.142	0.739	1e-36
195377064	822	GJ11999 [Drosophila virilis] gi|19415447	0.521	0.119	0.714	2e-36
195126985	803	GI13224 [Drosophila mojavensis] gi|19391	0.702	0.164	0.575	3e-36
194867614	809	GG14064 [Drosophila erecta] gi|190653891	0.489	0.113	0.728	9e-36
357631554	664	hypothetical protein KGM_15372 [Danaus p	0.537	0.152	0.693	9e-36
157131174	763	bestrophin 2,3,4 [Aedes aegypti] gi|1571	0.494	0.121	0.709	1e-35
345494944	894	PREDICTED: hypothetical protein LOC10011	0.494	0.104	0.731	2e-35
195015208	818	GH16281 [Drosophila grimshawi] gi|193897	0.489	0.112	0.728	6e-35
158292993	782	AGAP004881-PA [Anopheles gambiae str. PE	0.494	0.118	0.709	1e-34
33589428	809	RE18408p [Drosophila melanogaster]	0.494	0.114	0.720	1e-34

>gi|395398343|gb|AFN57625.1| bestrophin 2 [Spodoptera littoralis]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 82/96 (85%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKLVWREL+ YL +YY IN  YRFAL E  QR+FE++++Y   ++E IPMSFVLG
Sbjct: 25  WRGSVYKLVWRELLAYLTLYYTINLLYRFALTEQQQRIFEKVRQYFGAQSESIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVS 96
           FYVSLVVKRWWEQY+LLPWPDTLALF+SA IPG VS
Sbjct: 85  FYVSLVVKRWWEQYKLLPWPDTLALFISAGIPGAVS 120

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377064|ref|XP_002047312.1| GJ11999 [Drosophila virilis] gi|194154470|gb|EDW69654.1| GJ11999 [Drosophila virilis]

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/98 (71%), Positives = 81/98 (82%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKLVWREL+ YL +YY IN  YRFAL  S Q +F ++++Y A++ E IPMSFVLG
Sbjct: 25  WRGSVYKLVWRELIAYLCLYYTINVIYRFALTPSQQTIFNKIRQYFAQQGENIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVV 98
           FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP    VV
Sbjct: 85  FYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSSGVV 122

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195126985|ref|XP_002007949.1| GI13224 [Drosophila mojavensis] gi|193919558|gb|EDW18425.1| GI13224 [Drosophila mojavensis]

 Score =  157 bits (396), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/139 (57%), Positives = 95/139 (68%), Gaps = 7/139 (5%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKLVWREL+ YL +YY IN  YRFAL  S Q  F R++ Y A++ E +PMSFVLG
Sbjct: 25  WRGSVYKLVWRELIAYLCVYYTINLIYRFALTPSQQVTFNRIRIYFAQQGEAVPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIP---GVVSVVFLI---FPLLQNYEKKTVL 114
           FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP   GV  +   +   FP  Q+    T L
Sbjct: 85  FYVNLVVKRWWEQYRLLPWPDTLALFISAAIPNSTGVNRISLRVKRRFPTTQHL-VDTGL 143

Query: 115 IGLDHITYLQAHYLSSPMS 133
           +    +   +A    SPMS
Sbjct: 144 MHESEMKIFEAMNQKSPMS 162

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194867614|ref|XP_001972108.1| GG14064 [Drosophila erecta] gi|190653891|gb|EDV51134.1| GG14064 [Drosophila erecta]

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 67/92 (72%), Positives = 79/92 (85%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKL+WRELV YL +YY IN  YRF L ES Q +F++++ Y  +++E IPMSFVLG
Sbjct: 25  WRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKKIRLYFGQQSESIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIP 92
           FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP
Sbjct: 85  FYVNLVVKRWWEQYRLLPWPDTLALFISAAIP 116

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357631554|gb|EHJ79024.1| hypothetical protein KGM_15372 [Danaus plexippus]

 Score =  155 bits (391), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 82/101 (81%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKLVWREL+ YL +YY IN  YRFAL E  QR+FE++++Y   ++E IPMSFVLG
Sbjct: 25  WRGSVYKLVWRELLAYLTLYYTINLLYRFALTEHQQRIFEKVRQYFGAQSESIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLI 101
           FYVSLVVKRWWEQY+LLPWPDTLALF+SA IPG      L+
Sbjct: 85  FYVSLVVKRWWEQYKLLPWPDTLALFISAGIPGADETGRLM 125

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157131174|ref|XP_001662152.1| bestrophin 2,3,4 [Aedes aegypti] gi|157133653|ref|XP_001656278.1| bestrophin 2,3,4 [Aedes aegypti] gi|108870740|gb|EAT34965.1| AAEL012831-PA [Aedes aegypti] gi|108871620|gb|EAT35845.1| AAEL012021-PA [Aedes aegypti]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 79/93 (84%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYK +WREL+ YL +YY +N TYR+ L E  +R+FER++ YC ++ E +P+SFVLG
Sbjct: 25  WRGSVYKAIWRELLAYLCVYYTLNLTYRYGLNEEGRRVFERIRNYCGQQRENVPLSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYVSLVVKRWWEQYRLLPWPDTLALFVSAAI G
Sbjct: 85  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIQG 117

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345494944|ref|XP_001603406.2| PREDICTED: hypothetical protein LOC100119673 [Nasonia vitripennis]

 Score =  154 bits (389), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/93 (73%), Positives = 81/93 (87%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           W+GSVYKL+WREL+VYLV YY+INF YR+AL E  Q++FE+++ Y    +E IPMSFVLG
Sbjct: 25  WKGSVYKLIWRELLVYLVAYYVINFIYRYALSEEQQKVFEKIRYYFGNSSESIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYVSLVVKRWWEQY+LLPWPD LALF+SAAIPG
Sbjct: 85  FYVSLVVKRWWEQYKLLPWPDNLALFISAAIPG 117

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195015208|ref|XP_001984157.1| GH16281 [Drosophila grimshawi] gi|193897639|gb|EDV96505.1| GH16281 [Drosophila grimshawi]

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/92 (72%), Positives = 78/92 (84%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKLVWREL+ YL +YY IN  YRFAL  + Q LF +++ Y A++ E +PMSFVLG
Sbjct: 25  WRGSVYKLVWRELIAYLCLYYTINVIYRFALNPNQQTLFNKIRLYFAQQGENLPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIP 92
           FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP
Sbjct: 85  FYVNLVVKRWWEQYRLLPWPDTLALFISAAIP 116

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158292993|ref|XP_558233.3| AGAP004881-PA [Anopheles gambiae str. PEST] gi|157016893|gb|EAL40404.3| AGAP004881-PA [Anopheles gambiae str. PEST]

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/93 (70%), Positives = 80/93 (86%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYK VWREL+ YL++YY +NFTYR+ L E  +R+FER++ Y  ++ E +P+SFVLG
Sbjct: 25  WRGSVYKAVWRELLAYLLVYYTLNFTYRYGLSEDGKRVFERIRTYFGQQRETVPLSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYVSLVVKRWWEQYR+LPWPDTLALFVSAAI G
Sbjct: 85  FYVSLVVKRWWEQYRMLPWPDTLALFVSAAIQG 117

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33589428|gb|AAQ22481.1| RE18408p [Drosophila melanogaster]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 79/93 (84%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
           WRGSVYKL+WRELV YL +YY IN  YRF L ES Q +F++++ Y  +++E IPMSFVLG
Sbjct: 25  WRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKKIRLYFGQQSESIPMSFVLG 84

Query: 61  FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
           FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP 
Sbjct: 85  FYVNLVVKRWWEQYRLLPWPDTLALFISAAIPN 117

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
FB|FBgn0035696	809	Best2 "Bestrophin 2" [Drosophi	0.489	0.113	0.728	2.9e-35
FB|FBgn0040238	769	Best1 "Bestrophin 1" [Drosophi	0.494	0.120	0.548	3.8e-26
UNIPROTKB|O76090	585	BEST1 "Bestrophin-1" [Homo sap	0.494	0.158	0.559	1.7e-25
UNIPROTKB|Q6UY87	585	BEST1 "Bestrophin-1" [Macaca f	0.494	0.158	0.559	2.9e-25
UNIPROTKB|F1SDY1	507	BEST2 "Uncharacterized protein	0.494	0.183	0.516	3.3e-25
UNIPROTKB|A1A4I7	589	BEST1 "Uncharacterized protein	0.494	0.157	0.548	4.9e-25
UNIPROTKB|I3LNI9	585	BEST1 "Bestrophin-1" [Sus scro	0.494	0.158	0.548	6.1e-25
UNIPROTKB|A5H7G8	580	VMD2 "Bestrophin" [Canis lupus	0.494	0.160	0.548	9.9e-25
FB|FBgn0036491	526	Best4 "Bestrophin 4" [Drosophi	0.494	0.176	0.473	3.2e-24
UNIPROTKB|E1C882	669	BEST3 "Uncharacterized protein	0.718	0.201	0.434	3.9e-24

FB|FBgn0035696 Best2 "Bestrophin 2" [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 2.9e-35, Sum P(2) = 2.9e-35
 Identities = 67/92 (72%), Positives = 79/92 (85%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGSVYKL+WRELV YL +YY IN  YRF L ES Q +F++++ Y  +++E IPMSFVLG
Sbjct:    25 WRGSVYKLIWRELVAYLCLYYTINVIYRFGLTESQQAIFKKIRLYFGQQSESIPMSFVLG 84

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIP 92
             FYV+LVVKRWWEQYRLLPWPDTLALF+SAAIP
Sbjct:    85 FYVNLVVKRWWEQYRLLPWPDTLALFISAAIP 116

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

GO:0006820 "anion transport" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

FB|FBgn0040238 Best1 "Bestrophin 1" [Drosophila melanogaster (taxid:7227)]

 Score = 305 (112.4 bits), Expect = 3.8e-26, P = 3.8e-26
 Identities = 51/93 (54%), Positives = 68/93 (73%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKLVW +L+ +L IYY IN  YRF L  + +  FE + +YC    E+IP+SFVLG
Sbjct:    25 WRGSIYKLVWLDLLAFLTIYYAINMVYRFGLNPAQKETFEAIVQYCDSYRELIPLSFVLG 84

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYVS+V+ RWW QY  +PWPD +A+FVS+ + G
Sbjct:    85 FYVSIVMTRWWNQYTSIPWPDPIAVFVSSNVHG 117

GO:0005254 "chloride channel activity" evidence=NAS;IDA

GO:0072320 "volume-sensitive chloride channel activity" evidence=IDA

GO:0016021 "integral to membrane" evidence=IDA

GO:0006884 "cell volume homeostasis" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

UNIPROTKB|O76090 BEST1 "Bestrophin-1" [Homo sapiens (taxid:9606)]

 Score = 296 (109.3 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 52/93 (55%), Positives = 66/93 (70%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL++ E +++L+ YYII F YR AL E  Q +FE+L  YC    ++IP+SFVLG
Sbjct:    24 WRGSIYKLLYGEFLIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct:    84 FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116

GO:0034707 "chloride channel complex" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0007601 "visual perception" evidence=TAS

GO:0016021 "integral to membrane" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005254 "chloride channel activity" evidence=IDA

GO:0006821 "chloride transport" evidence=IDA

GO:0030321 "transepithelial chloride transport" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q6UY87 BEST1 "Bestrophin-1" [Macaca fascicularis (taxid:9541)]

 Score = 294 (108.6 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 52/93 (55%), Positives = 65/93 (69%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL++ E  ++L+ YYII F YR AL E  Q +FE+L  YC    ++IP+SFVLG
Sbjct:    24 WRGSIYKLLYGEFFIFLLCYYIIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct:    84 FYVTLVVTRWWNQYENLPWPDRLMSLVSGFVEG 116

GO:0016323 "basolateral plasma membrane" evidence=ISS

UNIPROTKB|F1SDY1 BEST2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 270 (100.1 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
 Identities = 48/93 (51%), Positives = 63/93 (67%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL+WREL+ +L +Y  ++  YRF L E  +R FE+L  YC +   +IP+SFVLG
Sbjct:    24 WRGSIYKLLWRELLCFLGLYMALSAAYRFVLTEEQKRYFEKLVIYCDQYASLIPVSFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  +P PD L   V   + G
Sbjct:    84 FYVTLVVHRWWNQYLSMPMPDPLMCVVVGTVHG 116

GO:0051899 "membrane depolarization" evidence=IEA

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|A1A4I7 BEST1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 292 (107.8 bits), Expect = 4.9e-25, P = 4.9e-25
 Identities = 51/93 (54%), Positives = 67/93 (72%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL++ E +++L+ YYII F YR AL +  Q +FE+L  YC    ++IP+SFVLG
Sbjct:    24 WRGSIYKLLYGEFLIFLLCYYIIRFIYRMALTDEQQVIFEKLTLYCDSYIQLIPISFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  LPWPD L   VS+ + G
Sbjct:    84 FYVTLVVTRWWNQYENLPWPDRLMNLVSSFVEG 116

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|I3LNI9 BEST1 "Bestrophin-1" [Sus scrofa (taxid:9823)]

 Score = 291 (107.5 bits), Expect = 6.1e-25, P = 6.1e-25
 Identities = 51/93 (54%), Positives = 66/93 (70%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL++ E +++L+ YYII F YR AL +  Q +FE+L  YC    ++IP+SFVLG
Sbjct:    24 WRGSIYKLLYGEFLIFLLCYYIIRFIYRMALTDEQQVIFEKLTLYCDSYIQLIPISFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct:    84 FYVTLVVTRWWNQYENLPWPDRLMNLVSCFVEG 116

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

UNIPROTKB|A5H7G8 VMD2 "Bestrophin" [Canis lupus familiaris (taxid:9615)]

 Score = 289 (106.8 bits), Expect = 9.9e-25, P = 9.9e-25
 Identities = 51/93 (54%), Positives = 65/93 (69%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL++ E +++L+ YY I F YR AL E  Q +FE+L  YC    ++IP+SFVLG
Sbjct:    24 WRGSIYKLLYGEFLIFLLSYYTIRFIYRMALTEEQQVMFEKLTLYCDSYIQLIPISFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             FYV+LVV RWW QY  LPWPD L   VS  + G
Sbjct:    84 FYVTLVVTRWWNQYENLPWPDRLMNLVSGLVEG 116

GO:0051924 "regulation of calcium ion transport" evidence=IEA

GO:0050908 "detection of light stimulus involved in visual perception" evidence=IEA

GO:0030321 "transepithelial chloride transport" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0005254 "chloride channel activity" evidence=IEA

FB|FBgn0036491 Best4 "Bestrophin 4" [Drosophila melanogaster (taxid:7227)]

 Score = 283 (104.7 bits), Expect = 3.2e-24, P = 3.2e-24
 Identities = 44/93 (47%), Positives = 66/93 (70%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             WRGS+YKL+W +L+V+  +Y ++  TYR  + E  +R FE +  YC K   +IP+SFVLG
Sbjct:    25 WRGSIYKLIWLDLIVFFGLYCLLAITYRLLVNEEGKRFFEAIMSYCEKNGSLIPLSFVLG 84

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPG 93
             F+V +V+ RWW+QY  +PWPD +A+ +S +I G
Sbjct:    85 FFVRIVMNRWWDQYTTIPWPDGIAILISTSIHG 117

GO:0006820 "anion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0005253 "anion channel activity" evidence=ISS

UNIPROTKB|E1C882 BEST3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 60/138 (43%), Positives = 81/138 (58%)

Query:     1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLG 60
             W+GS+YKL++RE +V+  +Y  I+  YRF L  S +R FE+L  YC K  E IP++FVLG
Sbjct:    24 WKGSIYKLLYREFIVFATLYTAISVLYRFFLTGSQKRFFEKLSIYCDKYAEQIPVTFVLG 83

Query:    61 FYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHI 120
             FYV+LVV RWW Q+  LPWPD L   +S+ + G      LI   L  Y   T L+    +
Sbjct:    84 FYVTLVVNRWWNQFVNLPWPDRLMFLISSCVQGRDEYGRLIRRTLMRYVNLTSLLIFRSV 143

Query:   121 TYLQAHYLSSP-MSFVLG 137
             +   A Y   P M  V+G
Sbjct:   144 S--TAVYKRFPTMDHVVG 159

GO:0005254 "chloride channel activity" evidence=IEA

GO:0043271 "negative regulation of ion transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O76090	BEST1_HUMAN	No assigned EC number	0.5591	0.4946	0.1589	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	188
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	1e-21
pfam01062	284	pfam01062, Bestrophin, Bestrophin, RFP-TM, chlorid	6e-11

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score = 88.7 bits (221), Expect = 1e-21
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 18/101 (17%)

Query: 1   WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEV----IPMS 56
           WRGS+ K +W EL+V+L++  ++   Y           FE L KYC          + +S
Sbjct: 16  WRGSILKSIWPELLVFLLLSALVTAIYI----------FELLAKYCLPIAPFTLIGLALS 65

Query: 57  FVLGFYVSLVVKRWWEQYRL----LPWPDTLALFVSAAIPG 93
           F LGF  +    RWWE  +L    + W  +LA  VS  IPG
Sbjct: 66  FFLGFRNNAAYDRWWEARKLWGALVNWSRSLARQVSTLIPG 106

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

>gnl|CDD|216274 pfam01062, Bestrophin, Bestrophin, RFP-TM, chloride channel

 Score = 59.5 bits (145), Expect = 6e-11
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 4/78 (5%)

Query: 97  VVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPMSFVLGFYVSLVVKRWWEQYRL--- 153
           +VFL+   L        L+    +       +   +SF LGF  +    RWWE  +L   
Sbjct: 29  LVFLLLSALVTAIYIFELLAKYCLPIAPFTLIGLALSFFLGFRNNAAYDRWWEARKLWGA 88

Query: 154 -LPWPDTLALFVSAAIPG 170
            + W  +LA  VS  IPG
Sbjct: 89  LVNWSRSLARQVSTLIPG 106

Bestrophin is a 68-kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE). It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterized by a depressed light peak in the electrooculogram. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties. The bestrophins are four-pass transmembrane chloride-channel proteins, and the RFP-TM or bestrophin domain extends from the N-terminus through approximately 350 amino acids and contains all of the TM domains as well as nearly all reported disease causing mutations. Interestingly, the RFP motif is not conserved evolutionarily back beyond Metazoa, neither is it in plant members. Length = 284

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG3547|consensus	450		100.0
KOG3547|consensus	450		99.97
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	99.36
PF01062	293	Bestrophin: Bestrophin, RFP-TM, chloride channel;	98.49

>KOG3547|consensus

Probab=100.00  E-value=1.6e-40  Score=304.24  Aligned_cols=127  Identities=42%  Similarity=0.882  Sum_probs=125.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcCCcchhhhhhHHHHHHHHHHHHhcccCCch
Q psy2163           1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTEVIPMSFVLGFYVSLVVKRWWEQYRLLPWP   80 (188)
Q Consensus         1 WkGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~~IPlsF~LGFFvs~vl~RW~~s~~ki~W~   80 (188)
                      |||||||+||+||++|+++|++++++||++|+++||++||+++.||+++.+.||++|||||||++|+.|||+++.++|||
T Consensus        24 WkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~~~~iPLtFmLGFfVt~Vv~RW~~~f~nig~i  103 (450)
T KOG3547|consen   24 WKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSRLDFIPLTFMLGFFVTIVVDRWWKQFRNIGWI  103 (450)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcccccccchHhhhhhHHHHHHHHHHHHhccCch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2163          81 DTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHY  127 (188)
Q Consensus        81 D~la~~i~~yi~g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~  127 (188)
                      |++|+.++++++|.||++|.+||+|+|||+++|+|++|+|+..++++
T Consensus       104 d~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkR  150 (450)
T KOG3547|consen  104 DNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKR  150 (450)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999988776

>KOG3547|consensus

Probab=99.97  E-value=2.5e-32  Score=250.30  Aligned_cols=114  Identities=32%  Similarity=0.545  Sum_probs=104.8

Q ss_pred             hhHHHHHHHHHHHHhcccCCchHHHHHHHHHhc------CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcch
Q psy2163          59 LGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAI------PGVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSPM  132 (188)
Q Consensus        59 LGFFvs~vl~RW~~s~~ki~W~D~la~~i~~yi------~g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~~~ipl  132 (188)
                      .+.|..+ +.||+||+||.+|.|++++++++|+      .++++.|+.+|+++++||+..              .++|||
T Consensus        14 ~~~f~kl-l~rWkGSiwKai~~el~~~l~~Y~~i~~iYR~~l~~~qq~~Fe~~~~~~d~~--------------~~~iPL   78 (450)
T KOG3547|consen   14 SFTFLKL-LLRWKGSIWKAIWKELLIWLILYYIISVIYRFALTESQQETFEKFVMYCDSR--------------LDFIPL   78 (450)
T ss_pred             cHHHHHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc--------------cccccc
Confidence            4555666 4899999999999999999998765      789999999999999999874              578999


Q ss_pred             hHhHHHHHHHHHHHHHHhhhcCCchhHHHHHHHhhccCCe------------------eEEEeecChhhhccC
Q psy2163         133 SFVLGFYVSLVVKRWWEQYRLLPWPDTLALFVSAAIPGVV------------------SVVFLIFPPLQKSRF  187 (188)
Q Consensus       133 ~f~lgF~v~~v~~Rw~~~~~~i~~~d~~~~~~~~~~~g~~------------------~~vfr~i~~~~r~rf  187 (188)
                      +||||||||+|++|||+||+||||||++|+.+|+++||++                  +|||||||++|||||
T Consensus        79 tFmLGFfVt~Vv~RW~~~f~nig~id~~a~~vs~~i~g~d~~~r~~RRtIiRY~vLsqvLv~RdIS~~VrkRF  151 (450)
T KOG3547|consen   79 TFMLGFFVTIVVDRWWKQFRNIGWIDNLALLVSAYIPGTDERARLIRRTIIRYLVLSQVLVFRDISMKVRKRF  151 (450)
T ss_pred             hHhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999964                  999999999999999

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=99.36  E-value=1.9e-12  Score=111.53  Aligned_cols=107  Identities=28%  Similarity=0.543  Sum_probs=92.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHhhcC--Ccc--hhhhhhHHHHHHHHHHHHhccc
Q psy2163           1 WRGSVYKLVWRELVVYLVIYYIINFTYRFALIESHQRLFERLQKYCAKKTE--VIP--MSFVLGFYVSLVVKRWWEQYRL   76 (188)
Q Consensus         1 WkGSi~K~iw~el~i~~~~Y~~i~~~Yr~~l~~~~~~~Fe~~~~~~~~~~~--~IP--lsF~LGFFvs~vl~RW~~s~~k   76 (188)
                      ||||++|.||+++++++++++++.++|          .++....++...+.  .++  ++|+|||+++.+..|||+....
T Consensus        22 ~~gsv~~~i~~~ll~~~~~~~~v~~~~----------~~~~~~~~~~~~~~~~l~g~~l~~lL~Fr~n~ay~Rwwe~r~~   91 (293)
T PF01062_consen   22 WRGSVLKRIWPPLLVFLALAAAVALLY----------IFEPICWLSLPSSPFSLLGIALSFLLVFRTNTAYDRWWEARKL   91 (293)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHH----------hhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999          34445555655554  555  9999999999999999999999


Q ss_pred             ----CCchHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy2163          77 ----LPWPDTLALFVSAAIPGVVSVVFLIFPLLQNYEKKTVLIGLDH  119 (188)
Q Consensus        77 ----i~W~D~la~~i~~yi~g~dE~~R~ifr~I~RY~~l~~~l~~r~  119 (188)
                          ++++++++-.++.++++.+++.+..++.++ |+...... +|.
T Consensus        92 wg~l~~~~r~l~~~~~~~~~~~~~~~~l~r~~ia-~~~~~~~~-lR~  136 (293)
T PF01062_consen   92 WGNLVNWSRNLARQICAFVPDDDERRRLLRRLIA-FAVALKAH-LRG  136 (293)
T ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH-HHHHHHHH-hcC
Confidence                999999999999999999998888888888 98876544 444

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

>PF01062 Bestrophin: Bestrophin, RFP-TM, chloride channel; InterPro: IPR021134 Bestrophin is a 68kDa basolateral plasma membrane protein expressed in retinal pigment epithelial cells (RPE)

Probab=98.49  E-value=5.4e-08  Score=83.86  Aligned_cols=93  Identities=26%  Similarity=0.425  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhcccCCchHHHHHHHHHhcC-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc--hhHhHHH
Q psy2163          62 YVSLVVKRWWEQYRLLPWPDTLALFVSAAIP-GVVSVVFLIFPLLQNYEKKTVLIGLDHITYLQAHYLSSP--MSFVLGF  138 (188)
Q Consensus        62 Fvs~vl~RW~~s~~ki~W~D~la~~i~~yi~-g~dE~~R~ifr~I~RY~~l~~~l~~r~I~~~~~~~~~ip--l~f~lgF  138 (188)
                      +... +.||+|++.+-.|++.+++.+.+..- ...     .+.....++.....            ..+++  ++|+|||
T Consensus        15 ~~~~-l~~~~gsv~~~i~~~ll~~~~~~~~v~~~~-----~~~~~~~~~~~~~~------------~~l~g~~l~~lL~F   76 (293)
T PF01062_consen   15 WWRL-LFRWRGSVLKRIWPPLLVFLALAAAVALLY-----IFEPICWLSLPSSP------------FSLLGIALSFLLVF   76 (293)
T ss_pred             HHHH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-----hhcccccccccccc------------hhHHHHHHHHHHHH
Confidence            3444 58999999999999988777554321 100     11222222222110            01244  9999999


Q ss_pred             HHHHHHHHHHHhhhc----CCchhHHHHHHHhhccCCe
Q psy2163         139 YVSLVVKRWWEQYRL----LPWPDTLALFVSAAIPGVV  172 (188)
Q Consensus       139 ~v~~v~~Rw~~~~~~----i~~~d~~~~~~~~~~~g~~  172 (188)
                      +++.+.+|||++.+.    ++++++++..+.+++++++
T Consensus        77 r~n~ay~Rwwe~r~~wg~l~~~~r~l~~~~~~~~~~~~  114 (293)
T PF01062_consen   77 RTNTAYDRWWEARKLWGNLVNWSRNLARQICAFVPDDD  114 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence            999999999999999    9999999999999999984

It is encoded by the VMD2 gene, which is mutated in Best macular dystrophy, a disease characterised by a depressed light peak in the electrooculogram []. VMD2 encodes a 585-amino acid protein with an approximate mass of 68 kDa which has been designated bestrophin. Bestrophin shares homology with the Caenorhabditis elegans RFP gene family, named for the presence of a conserved arginine (R), phenylalanine (F), proline (P), amino acid sequence motif. Bestrophin is a plasma membrane protein, localised to the basolateral surface of RPE cells consistent with a role for bestrophin in the generation or regulation of the EOG light peak. Bestrophin and other RFP family members represent a new class of chloride channels, indicating a direct role for bestrophin in generating the light peak []. The VMD2 gene underlying Best disease was shown to represent the first human member of the RFP-TM protein family. More than 97% of the disease-causing mutations are located in the N-terminal RFP-TM domain implying important functional properties []. This entry also includes a number of hypothetical proteins belonging to protein family UPF0187.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00