Psyllid ID: psy2222

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccccEEEEccccEEEccccccccccccccEEEEEEEcccEEEEEEcccEEEEEcccccEEEEcccccccccEEEEEEcccEEEEccccEEEEEEcccccEEEEccccccccEEEEEEEcccccccccccccHHHHHcccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHcccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHEcccEEEEEccccccccEccccccccccccccEccccccccccEEEEccccccccEEEEEEcccEEEEEccccEEEEccccccccccccccEEEEEEEcccEEEEEccccEEEEEccccEEEEccccccccHcEEEccccccEEEEEcccEEEEEccccccEEEEccccccccEEEEEccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHccccEccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mseyqavkrgklvlkgekpakkkkknksdtqahgsnskqvdpdienyagwtqvkHIKDIVGAISIEFGKRTFVSALDNGLFILgaihedkegpspeEIFTAILVNDSKVAFKSGFDKYLsidkngrvtgrsdavgpleqwepvfeddnmALLGAnqcfmsvseqddSIVATSRKAGKNEMVKLRSNslhlknldkdddipeeertnklsdIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRskmkadryck
Flexible Loop (DISEMBL)
mseyqavkrgklvlkgekpakkkkknksdtqahgsnskqvdpdIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDkylsidkngrvtgrsdavgplEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSrkagknemvklrsnslhlknldkdddipeeertnklsdielnYVKKFQkfqdkkiklnsdNIAVLKeakaqgylhetmldrrskmkadryck
Low Complexity Region (SEG)
MSEYQAVKRGklvlkgekpakkkkknkSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVkkfqkfqdkkikLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK
Disordered region (IsUnstruct)
*******************************************IENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHE*******EEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMS**************************************************IELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYL******************
Disordered Region (DISOPRED)
****QAVKR***************************************GWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFIL**********SPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQ***IVATSRKAGKNEMVKLRSN***************************NYVKKFQ***********************GYLHETMLDRRSKMKADRYCK
Disordered Region (DISEMBL)
********RGKLVLKGE**********************VDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRR**********
Disordered Region (DISPRO)
*SEYQAVKRGKLVLKGE*********************QVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLH******DDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMK****C*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
Q9VWA8	262	Protein FRG1 homolog OS=D	yes	N/A	0.981	0.988	0.550	1e-63
O73747	255	Protein FRG1 OS=Takifugu	N/A	N/A	0.965	1.0	0.492	4e-62
Q14331	258	Protein FRG1 OS=Homo sapi	yes	N/A	0.973	0.996	0.509	1e-61
P97376	258	Protein FRG1 OS=Mus muscu	yes	N/A	0.973	0.996	0.501	1e-60
Q9BZ01	182	Protein FRG1B OS=Homo sap	no	N/A	0.636	0.923	0.488	2e-40
O18282	274	Protein FRG1 homolog OS=C	yes	N/A	0.962	0.927	0.340	4e-31
Q9P7X3	245	Protein frg1 OS=Schizosac	yes	N/A	0.598	0.644	0.245	0.0002

>sp|Q9VWA8|FRG1_DROME Protein FRG1 homolog OS=Drosophila melanogaster GN=CG6480 PE=1 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/267 (55%), Positives = 190/267 (71%), Gaps = 8/267 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQ---VDPDIENYAGWTQVKHIK 57
           MS+Y   +  KLVLKGEK  K KK+ K   +A GS+ K    VD D   + GW   K   
Sbjct: 1   MSDYDHARIKKLVLKGEKLKKSKKRKKEKDEA-GSSKKAKVVVDEDAVKHGGWWAAKTAA 59

Query: 58  DIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDK 117
           DI G +SIEFG R+++ A+DNGLF LGA H   +GP PEEIFTA  +ND KVAFKSG+ K
Sbjct: 60  DITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAGDGPDPEEIFTAFPINDRKVAFKSGYGK 119

Query: 118 YLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGK 177
           YL I+K+G VTGRS+AVG +EQWEPVFE+  MALL     FMS+  QDD+ VA  +K G+
Sbjct: 120 YLKIEKDGMVTGRSEAVGGMEQWEPVFEEQRMALLSETGHFMSIDPQDDACVALRKKVGQ 179

Query: 178 NEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVL 237
           +E+ K+RSN+     +D +   P+EE+ + L ++E NYVKKFQKFQDKK+++N +++  L
Sbjct: 180 HEICKVRSNASRDVVIDTE---PKEEKGD-LGEVEKNYVKKFQKFQDKKMRINQNDVKEL 235

Query: 238 KEAKAQGYLHETMLDRRSKMKADRYCK 264
           ++AKAQG LHET+LDRRSKMKADRYCK
Sbjct: 236 EQAKAQGSLHETLLDRRSKMKADRYCK 262

May have a role in processing of pre-rRNA or in the assembly of rRNA into ribosomal subunits.
Drosophila melanogaster (taxid: 7227)

>sp|O73747|FRG1_TAKRU Protein FRG1 OS=Takifugu rubripes GN=frg1 PE=2 SV=1

 Score =  238 bits (607), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 130/264 (49%), Positives = 174/264 (65%), Gaps = 9/264 (3%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           M+EY  VK  KLVLKG+K  KK K      +A   + K   PDI    GW  VK   ++ 
Sbjct: 1   MAEYTKVKSTKLVLKGQKQGKKHKHKDRKRKATDEDEK---PDI--VGGWWVVKSFVEMN 55

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G +++E     ++ ALD+GLF LGA H+D EGP P E FT I ++DS++A KSG+ +YL 
Sbjct: 56  GTVALEMQNNAYIHALDSGLFTLGAPHKDDEGPDPPEQFTTIKLSDSRIALKSGYGRYLG 115

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           I+  G V GRSDA+GP EQWEPVF+D  MALL AN CF+S S+  D IVA S+ AG  EM
Sbjct: 116 INSEGLVVGRSDAIGPREQWEPVFQDGKMALLAANSCFISYSDSGD-IVANSKTAGDEEM 174

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           +K+R+++   +     DD+ EE+R N +   E+NYVKKFQ FQD+++++N  +   LK+A
Sbjct: 175 LKIRTSA--ERETRSKDDLAEEDRGN-VKSCEVNYVKKFQSFQDRRLRVNEGDSMTLKKA 231

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           +  G  HE +LDRRSKMKADRYCK
Sbjct: 232 RTDGKFHEALLDRRSKMKADRYCK 255

May have a role in processing of pre-rRNA or in the assembly of rRNA into ribosomal subunits.

Takifugu rubripes (taxid: 31033)

>sp|Q14331|FRG1_HUMAN Protein FRG1 OS=Homo sapiens GN=FRG1 PE=1 SV=1

 Score =  236 bits (602), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 181/265 (68%), Gaps = 8/265 (3%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           M+EY  VK  KLVLKG K   KKKK+K   +      ++   DI     W  V +  +I 
Sbjct: 1   MAEYSYVKSTKLVLKGTKTKSKKKKSKDKKRKR-EEDEETQLDIVGI--WWTVTNFGEIS 57

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
           G I+IE  K T++ ALDNGLF LGA H E  EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct: 58  GTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117

Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
            I+ +G V GRSDA+GP EQWEPVF++  MALL +N CF+  +E  D I A S+ AG+ E
Sbjct: 118 GINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGD-IEAKSKTAGEEE 176

Query: 180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKE 239
           M+K+RS +   +   K DDIPEE++ N +   E+NYVKKFQ FQD K+K++ ++  +LK+
Sbjct: 177 MIKIRSCA--ERETKKKDDIPEEDKGN-VKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233

Query: 240 AKAQGYLHETMLDRRSKMKADRYCK 264
           A+  G+LHET+LDRR+K+KADRYCK
Sbjct: 234 ARKDGFLHETLLDRRAKLKADRYCK 258

May have a role in processing of pre-rRNA or in the assembly of rRNA into ribosomal subunits. May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|P97376|FRG1_MOUSE Protein FRG1 OS=Mus musculus GN=Frg1 PE=1 SV=2

 Score =  233 bits (594), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/265 (50%), Positives = 180/265 (67%), Gaps = 8/265 (3%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           M+EY  VK  KLVLKG K   KKKK+K   +      ++   DI     W  V +  +I 
Sbjct: 1   MAEYSYVKSTKLVLKGTKAKSKKKKSKDKKRKR-EEDEETQLDIVGI--WWTVSNFGEIS 57

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
           G I+IE  K  ++ ALDNGLF LGA H E  EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct: 58  GTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117

Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
            I+ +G V GRSDA+GP EQWEPVF+D  MALL +N CF+  +E  D I A ++ AG+ E
Sbjct: 118 GINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-IEAKNKTAGEEE 176

Query: 180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKE 239
           M+K+RS +   +   K DDIPEE++ + +   E+NYVKKFQ FQD K+K++ ++  +LK+
Sbjct: 177 MIKIRSCA--ERETKKKDDIPEEDKGS-VKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233

Query: 240 AKAQGYLHETMLDRRSKMKADRYCK 264
           A+  G+LHET+LDRR+K+KADRYCK
Sbjct: 234 ARKDGFLHETLLDRRAKLKADRYCK 258

May have a role in processing of pre-rRNA or in the assembly of rRNA into ribosomal subunits. May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9BZ01|FRG1B_HUMAN Protein FRG1B OS=Homo sapiens GN=FRG1B PE=2 SV=1

 Score =  166 bits (419), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/174 (48%), Positives = 122/174 (70%), Gaps = 6/174 (3%)

Query: 80  LFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQ 139
           +F+   +H  K+GPSP E F A+ ++DS++A KSG+ KYL I+ +  + G SDA+GP EQ
Sbjct: 12  VFLPWELH-TKKGPSPPEQFMAVKLSDSRIALKSGYGKYLGINSD-ELVGHSDAIGPREQ 69

Query: 140 WEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDI 199
           WEPVF++  MALL +N CF+  +E  D I A S+ AG+ EM+K+RS +   K   K DDI
Sbjct: 70  WEPVFQNGKMALLASNSCFIRCNEAGD-IEAKSKTAGEEEMIKIRSCAE--KETKKKDDI 126

Query: 200 PEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDR 253
           PEE++ N +   E+NYVKKFQ FQD K+K++ +   +LK+A+  G+LHET+LDR
Sbjct: 127 PEEDKGN-VKQCEINYVKKFQSFQDHKLKISKEESKILKKAQKDGFLHETLLDR 179

Homo sapiens (taxid: 9606)

>sp|O18282|FRG1_CAEEL Protein FRG1 homolog OS=Caenorhabditis elegans GN=frg-1 PE=3 SV=2

 Score =  135 bits (339), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 155/279 (55%), Gaps = 25/279 (8%)

Query: 2   SEYQAVKRGKLVLKGEKPAKKK---KKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKD 58
           ++Y AVK G L LK    A KK   K  K   + +  + +++DPD     GW ++    D
Sbjct: 4   ADYSAVKGGGLKLK----AGKKNLFKVGKEKKKKNKDDKEKIDPDTVENGGWRKIADEFD 59

Query: 59  IVG----AISIEFG---KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAI-LVNDSKVA 110
           + G    AI +  G    RT+V+A+DNG F +G  H + EGP+PEEIF  +   +DSK++
Sbjct: 60  MKGGTNVAIEVASGAGSTRTYVAAMDNGKFTIGFPHPEGEGPNPEEIFALVKTPDDSKIS 119

Query: 111 FKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLG-ANQCFMS-VSEQDDSI 168
            K+GF +Y+ +D   ++   ++A+G  EQ+  VF++   A    ++  F+S V  ++  I
Sbjct: 120 LKTGFGRYVGVDSEYQLVAMAEAIGSREQFVLVFQEGKTAFQAVSSPLFLSTVPNKEGHI 179

Query: 169 VATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQK----FQD 224
              SR A +NEMV +R++++    +D       E+R N   + E  YVK +Q      ++
Sbjct: 180 YVASRTATENEMVNIRTDAIQEGPVDWRS---VEDRKNA-RECETAYVKMYQHSKVDLKN 235

Query: 225 KKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYC 263
           + I ++  +   +K+A+A G  HE +LDRR KMK+DRYC
Sbjct: 236 RHIAIDVKDKKGVKKAQADGSAHELLLDRRMKMKSDRYC 274

May have a role in processing of pre-rRNA or in the assembly of rRNA into ribosomal subunits.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9P7X3|FRG1_SCHPO Protein frg1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=frg1 PE=3 SV=1

 Score = 46.6 bits (109), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 25/183 (13%)

Query: 89  DKEGPSPE---EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE 145
           DK    PE   ++F   ++N++ +  KS   KY+S  K+G +    +AVG  EQW  + E
Sbjct: 78  DKVSLEPELTRQVFLLSILNNT-ILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQW--IAE 134

Query: 146 DDNMALLG----ANQCFMSVS--EQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDI 199
           +           + + ++++S  +QD +I   S         ++R  +  LK        
Sbjct: 135 NLGSGFWAWKSVSTKKYLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLK-------- 186

Query: 200 PEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKA 259
              +  + L D    + ++ +    +K  L++D    LK+A  +G LHE +LD R   ++
Sbjct: 187 ---KNKSSLFDNPTIHSRQLESMAGRK--LSTDEKKTLKKAFKEGVLHEALLDLRVSSRS 241

Query: 260 DRY 262
           D+Y
Sbjct: 242 DKY 244

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
383850884	258	PREDICTED: protein FRG1 homolog [Megachi	0.977	1.0	0.541	4e-77
91094625	258	PREDICTED: similar to Protein FRG1 homol	0.977	1.0	0.530	3e-73
307213542	258	Protein FRG1 [Harpegnathos saltator]	0.977	1.0	0.518	7e-71
332028323	258	Protein FRG1 [Acromyrmex echinatior]	0.977	1.0	0.522	2e-69
322798994	258	hypothetical protein SINV_05839 [Solenop	0.977	1.0	0.515	4e-67
350399503	258	PREDICTED: protein FRG1-like [Bombus imp	0.977	1.0	0.515	9e-67
156549020	259	PREDICTED: protein FRG1 homolog [Nasonia	0.981	1.0	0.515	9e-67
321469760	266	hypothetical protein DAPPUDRAFT_303869 [	0.981	0.973	0.523	3e-66
340721051	257	PREDICTED: protein FRG1-like [Bombus ter	0.973	1.0	0.503	2e-65
195427641	265	GK17238 [Drosophila willistoni] gi|19415	0.840	0.837	0.544	2e-65

>gi|383850884|ref|XP_003701004.1| PREDICTED: protein FRG1 homolog [Megachile rotundata]

 Score =  293 bits (751), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/264 (54%), Positives = 192/264 (72%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY  V+ GKLVLKGEK   KK+K K   + H + S+  + D   + GW +   + D+ 
Sbjct: 1   MSEYDKVRTGKLVLKGEKIRSKKRKAKRQEKEHVTTSE--NKDTVTHGGWWKATQVLDVT 58

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG  T++ ALDNGLF LGA H++ EGPSPEEI TA  + ++KVA KSG+ KYL 
Sbjct: 59  GTVAIEFGNHTYMKALDNGLFTLGAPHDEGEGPSPEEILTAFPIGETKVALKSGYGKYLG 118

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           +DKNG V GRSDAVG +EQWEP+F+D+ +A+L +N CFMSV+++DD I+  SR AG +E 
Sbjct: 119 VDKNGIVVGRSDAVGTIEQWEPIFQDNKLAILNSNNCFMSVTDEDD-IICQSRTAGSSEF 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
             +R  S+  K  D + D+P+EE+   L D+E+NYV+KFQKFQDKK+K+N  N + L++A
Sbjct: 178 CIIR--SITQKTQDPNKDVPKEEQ-GSLHDVEINYVRKFQKFQDKKLKINQTNRSELEKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G LHET+LDRRSKMKADRYCK
Sbjct: 235 KREGNLHETLLDRRSKMKADRYCK 258

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094625|ref|XP_969231.1| PREDICTED: similar to Protein FRG1 homolog [Tribolium castaneum] gi|270016441|gb|EFA12887.1| hypothetical protein TcasGA2_TC011566 [Tribolium castaneum]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 140/264 (53%), Positives = 198/264 (75%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY+ V+ GKLVLKGEK   KK+K+K   +     + +VD D   +  W +V  I+DI 
Sbjct: 1   MSEYEHVRGGKLVLKGEKHKSKKRKHKRKRE---DCAPKVDSDCLAHGNWWRVSKIEDIT 57

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFGK T+V ALD+GLF LGA H++ EGPSPEE+ TA+L+++ KVAFKSG+ KYL 
Sbjct: 58  GPVAIEFGKHTYVRALDSGLFTLGAPHDEGEGPSPEEVLTAVLIDERKVAFKSGYGKYLR 117

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           ++KNG VTGRSDA+G +EQWEPVF++  +AL   + CFMSV+++DD++VA  +KAG   M
Sbjct: 118 VEKNGVVTGRSDAIGAMEQWEPVFQEGKLALQSYSDCFMSVNDEDDAVVAVDKKAGPEHM 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           V++RS +  +K+++   D+P EE+ + L  +E+NYVKKFQKFQDK++++  ++ + LK+A
Sbjct: 178 VQVRSQT--VKDVNPLKDVPAEEQGD-LQQVEINYVKKFQKFQDKRLRICKEDSSQLKKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G  HE +LDRRSKMKADRYCK
Sbjct: 235 KEEGTFHEALLDRRSKMKADRYCK 258

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213542|gb|EFN88951.1| Protein FRG1 [Harpegnathos saltator]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 137/264 (51%), Positives = 193/264 (73%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY+ V+ GKLVLKGEK   KK+K+K   +      +  D D   + GW +VK++ +I 
Sbjct: 1   MSEYEKVRTGKLVLKGEKSRPKKRKHKKQEKEQDVTVE--DKDTVTHGGWWKVKNVFEIT 58

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G I+IEFG  T++ ALDNGLF LGA H++ +GPSPEEI TA  +N++K+A KSG+ KYL 
Sbjct: 59  GTIAIEFGNHTYLKALDNGLFTLGAPHDEGDGPSPEEILTAFPINETKIALKSGYGKYLG 118

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           +DK G V GRSDAVGP+EQWEP+F+D+ +A+L +  CF+SV+  DD ++  +R AG +E 
Sbjct: 119 VDKKGIVIGRSDAVGPIEQWEPIFQDNKLAILHSTGCFVSVT-SDDDVICQNRTAGPSEY 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           + +R  S+  ++     DIP+EE+   L+D+E+NYV+KFQKFQDKK+++N  + + LK+A
Sbjct: 178 IVIR--SITQRSQSPSWDIPKEEQ-GSLADVEVNYVRKFQKFQDKKLRINKSDRSELKKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           + +G LHET+LDRRSKMKADRYCK
Sbjct: 235 RVEGNLHETLLDRRSKMKADRYCK 258

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028323|gb|EGI68370.1| Protein FRG1 [Acromyrmex echinatior]

 Score =  268 bits (684), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 138/264 (52%), Positives = 188/264 (71%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY+ V+ GKLVLKGE    + KK KS  Q    +    D D   + GW +VK++ +I 
Sbjct: 1   MSEYEKVRTGKLVLKGE--KSRPKKRKSKRQEKEQDVTVEDKDTLTHGGWWKVKNVTEIT 58

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG + +V ALDNGLF LGA H++ EGP PEEI TA  ++++K+A KSG+ KYL 
Sbjct: 59  GTVAIEFGNQAYVKALDNGLFTLGAPHDEGEGPLPEEILTAFPISETKIALKSGYGKYLG 118

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           +DKNG V GRSDAVG +EQWEP+F+D  +A+L    CFMSV+  DD IV  +R AG +E 
Sbjct: 119 VDKNGIVIGRSDAVGSIEQWEPIFQDGKLAILNNTGCFMSVT-NDDDIVCQNRTAGTSEF 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           V +R  S+  ++   + DIP+EE+   L+++E+NYV+KFQKFQDKK+K+N  + + L++A
Sbjct: 178 VVVR--SIIQRSQSPNKDIPKEEQ-GSLTEVEVNYVRKFQKFQDKKLKINKSDRSELEKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G LHE +LDRRSKMKADRYCK
Sbjct: 235 KVEGNLHEILLDRRSKMKADRYCK 258

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322798994|gb|EFZ20454.1| hypothetical protein SINV_05839 [Solenopsis invicta]

 Score =  260 bits (664), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/264 (51%), Positives = 191/264 (72%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY+ V+ GKL+LKGEK   KK+K+K   +      +  D D   + GW +VK++ +I 
Sbjct: 1   MSEYEKVRTGKLILKGEKSKPKKRKSKKQEKELDVTVE--DKDTLTHGGWWKVKNVAEIT 58

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG +T++ ALDNGLF LGA H + E PSPEEI TA  ++++K+A KSG+ KYL 
Sbjct: 59  GTVAIEFGNQTYMKALDNGLFTLGAPHNEGESPSPEEILTAFPISETKIALKSGYGKYLG 118

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           +DKNG V GRSDAVG +EQWEP+F+D  +A+L    CFMSV+  DD I+  SR AG +E 
Sbjct: 119 VDKNGIVIGRSDAVGSIEQWEPIFQDGKLAILNNIGCFMSVT-NDDDIICQSRTAGSSEF 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           + +RS     +N +K  ++P+EE+   L+++E+NYV+KFQKFQDKK+++N  + + L++A
Sbjct: 178 IIIRSIIQRSENPNK--EVPKEEQ-GSLTEVEVNYVRKFQKFQDKKLRINKSDRSELEKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G LHET+LDRRSKMKADRYCK
Sbjct: 235 KVEGNLHETLLDRRSKMKADRYCK 258

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399503|ref|XP_003485549.1| PREDICTED: protein FRG1-like [Bombus impatiens]

 Score =  259 bits (662), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 136/264 (51%), Positives = 188/264 (71%), Gaps = 6/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY  V+ GKLVLKGEK   KK+K K   + H   S+  D D  ++ GW +   + ++ 
Sbjct: 1   MSEYDKVRTGKLVLKGEKKRTKKRKLKKQEKGHIITSE--DKDTISHGGWWKATQVSEVT 58

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG   ++ ALDNGLF LGA H + EGP PEEI TA  ++++KVA KSG+ KYL 
Sbjct: 59  GTVAIEFGNHIYMKALDNGLFTLGAPHNEGEGPLPEEILTAFPISETKVALKSGYGKYLG 118

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           IDK G V GRSDAVG +EQWEP+F+D+ +A+L +N CF+SV+++DD I+   R AG +E 
Sbjct: 119 IDKKGVVIGRSDAVGMIEQWEPIFQDNKLAILNSNDCFISVTDEDD-IICQKRTAGSSEF 177

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
             +R  S+  K  D + DIP+EE+   L D+E+NYV+KFQKFQDKK++++ ++ + L++A
Sbjct: 178 CTIR--SITQKAQDPNKDIPKEEQ-GSLHDVEVNYVRKFQKFQDKKLRISKEDSSKLEKA 234

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G LHE +LDRRSKMKADRYCK
Sbjct: 235 KREGTLHEALLDRRSKMKADRYCK 258

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549020|ref|XP_001607882.1| PREDICTED: protein FRG1 homolog [Nasonia vitripennis]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 136/264 (51%), Positives = 182/264 (68%), Gaps = 5/264 (1%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY  V+  KLVLKGEK   KK+K+K   +   +N+ Q D D   + GW +  ++ +I 
Sbjct: 1   MSEYDKVRTKKLVLKGEKHKSKKRKHKKQGRDDEANN-QKDEDTLRHGGWWKTSNVSEIT 59

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG   ++ ALDNGLF LGA H++ EGP PEEI TA  VN++K+A KSG+ KY+ 
Sbjct: 60  GTVAIEFGNLAYMKALDNGLFTLGAPHDEGEGPHPEEILTAFPVNETKIALKSGYGKYIG 119

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           +DK G V GRSDAVG +EQWEP+F+D  +A+LG   CF+SV+E DD IV    KAG +E 
Sbjct: 120 VDKKGMVVGRSDAVGAMEQWEPIFQDGKLAILGNTGCFISVAE-DDDIVCNKPKAGPSEY 178

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
           V +R     +   D +  IP EE+   L ++E+NYV+KFQKFQDKK++++ + I  LK+A
Sbjct: 179 VSIRCMMQQVD--DPNKGIPTEEQ-GSLEEVEVNYVRKFQKFQDKKLRISKNTIVELKKA 235

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K  G  HET+LDRRSKMKADRYCK
Sbjct: 236 KEGGNFHETLLDRRSKMKADRYCK 259

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321469760|gb|EFX80739.1| hypothetical protein DAPPUDRAFT_303869 [Daphnia pulex]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 142/271 (52%), Positives = 187/271 (69%), Gaps = 12/271 (4%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPD-IENYAGWTQVKHIKDI 59
           M+EY AV+ GKL LKG K  K  KK+KS  + H       D D +  + G+  V++   I
Sbjct: 1   MAEYAAVRSGKLKLKGHKDIKPAKKHKSKKRTHEEAIAASDKDDMIKHGGFWNVQNFSQI 60

Query: 60  VGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
            GA++IEFG+R ++ ALDNGLF+LG  H++ + PSPEEIFTA  V ++K+  KSG+ KYL
Sbjct: 61  SGALAIEFGERCYIKALDNGLFVLGPPHDEGDSPSPEEIFTAFPVGETKITLKSGYGKYL 120

Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
            IDKNG V GRSDAV  LEQWEPVF+D  +AL  AN  F+SVS  DDS  A S  AG +E
Sbjct: 121 GIDKNGIVVGRSDAVSALEQWEPVFQDGKLALQAANSKFVSVSPDDDSFYAQSITAGPDE 180

Query: 180 MVKLRSNSLHLKNLDKD------DDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDN 233
           ++KLR N    K+L+ D      +  P EE+ + +  IE+NYVK+FQKFQDKK+++N+++
Sbjct: 181 ILKLRCN----KDLEADIESKKKNKGPIEEKGS-VEQIEINYVKQFQKFQDKKMRVNTES 235

Query: 234 IAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
             VLK AKA+GYLHE +LDRRSKMK+DR CK
Sbjct: 236 REVLKSAKAEGYLHEVLLDRRSKMKSDRMCK 266

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721051|ref|XP_003398940.1| PREDICTED: protein FRG1-like [Bombus terrestris]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 133/264 (50%), Positives = 186/264 (70%), Gaps = 7/264 (2%)

Query: 1   MSEYQAVKRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
           MSEY  V+ GKLVLK  +   KK+K K   + H   S+  D D  ++ GW +   + ++ 
Sbjct: 1   MSEYDKVRTGKLVLK-GEKKAKKRKLKKQEKGHIITSE--DKDTISHGGWWKATQVSEVT 57

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           G ++IEFG   ++ ALDNGLF LGA H + EGP PEEI TA  ++++KVA KSG+ KYL 
Sbjct: 58  GTVAIEFGNHIYMKALDNGLFTLGAPHNEGEGPLPEEILTAFPISETKVALKSGYGKYLG 117

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
           IDK G V GRSDAVG +EQWEP+F+D+ +A+L +N CF+SV+++DD I+   R AG +E 
Sbjct: 118 IDKKGIVIGRSDAVGMIEQWEPIFQDNKLAILNSNDCFISVTDEDD-IICQKRTAGSSEF 176

Query: 181 VKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEA 240
             +R  S+  K  D + DIP+EE+   L D+E+NYV+KFQKFQDKK++++ ++ + L++A
Sbjct: 177 CTIR--SITQKAQDPNKDIPKEEQ-GSLHDVEVNYVRKFQKFQDKKLRISKEDSSKLEKA 233

Query: 241 KAQGYLHETMLDRRSKMKADRYCK 264
           K +G LHE +LDRRSKMKADRYCK
Sbjct: 234 KREGTLHEALLDRRSKMKADRYCK 257

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195427641|ref|XP_002061885.1| GK17238 [Drosophila willistoni] gi|194157970|gb|EDW72871.1| GK17238 [Drosophila willistoni]

 Score =  255 bits (651), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 123/226 (54%), Positives = 164/226 (72%), Gaps = 4/226 (1%)

Query: 39  QVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEI 98
           Q+D D E++ GW   K   DI G ++IEFG+R ++ ALDNGLF LGA H   +GP PEEI
Sbjct: 44  QIDQDAEDHGGWWSTKAAVDITGTVAIEFGERCYLKALDNGLFTLGAPHNQGDGPDPEEI 103

Query: 99  FTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCF 158
           FTA  +N+ KV+FKSG+ KYL I+K+G +TGRS+AVG +EQWEPVFE   MALL     F
Sbjct: 104 FTAFPINEQKVSFKSGYGKYLKIEKDGMITGRSEAVGSMEQWEPVFEGRRMALLAETGHF 163

Query: 159 MSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKK 218
           MS+  +DD+ VA  +K G++E+  +RSN+     +D++   P+EE+ + L ++E NYVKK
Sbjct: 164 MSIDPEDDACVALRKKVGEHEICVVRSNAARNVVIDEE---PKEEKGD-LVEVEKNYVKK 219

Query: 219 FQKFQDKKIKLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
           FQKFQDK++++N + I  L  AKA G LHET+LDRRSKMKADRYCK
Sbjct: 220 FQKFQDKRMRINQNGIRELVAAKADGSLHETLLDRRSKMKADRYCK 265

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
FB|FBgn0036964	262	CG6480 [Drosophila melanogaste	0.859	0.866	0.517	5.1e-58
UNIPROTKB|Q14331	258	FRG1 "Protein FRG1" [Homo sapi	0.973	0.996	0.430	7.2e-52
MGI|MGI:893597	258	Frg1 "FSHD region gene 1" [Mus	0.973	0.996	0.422	4e-51
ZFIN|ZDB-GENE-050417-324	255	zgc:112426 "zgc:112426" [Danio	0.803	0.831	0.481	1.7e-50
RGD|1585495	261	Frg1 "FSHD region gene 1" [Rat	0.973	0.984	0.414	8.8e-47
WB|WBGene00014177	274	frg-1 [Caenorhabditis elegans	0.958	0.923	0.317	7.1e-29
POMBASE|SPBP23A10.12	245	frg1 "FRG1 family protein, inv	0.799	0.861	0.228	0.00013
UNIPROTKB|G4N753	289	MGG_03612 "Uncharacterized pro	0.746	0.681	0.234	0.00034

FB|FBgn0036964 CG6480 [Drosophila melanogaster (taxid:7227)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 121/234 (51%), Positives = 158/234 (67%)

Query:    34 GSNSKQ---VDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDK 90
             GS+ K    VD D   + GW   K   DI G +SIEFG R+++ A+DNGLF LGA H   
Sbjct:    33 GSSKKAKVVVDEDAVKHGGWWAAKTAADITGTVSIEFGDRSYLKAMDNGLFTLGAPHNAG 92

Query:    91 EGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMA 150
             +GP PEEIFTA  +ND KVAFKSG+ KYL I+K+G VTGRS+AVG +EQWEPVFE+  MA
Sbjct:    93 DGPDPEEIFTAFPINDRKVAFKSGYGKYLKIEKDGMVTGRSEAVGGMEQWEPVFEEQRMA 152

Query:   151 LLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSD 210
             LL     FMS+  QDD+ VA  +K G++E+ K+RSN+     +D +   P+EE+ + L +
Sbjct:   153 LLSETGHFMSIDPQDDACVALRKKVGQHEICKVRSNASRDVVIDTE---PKEEKGD-LGE 208

Query:   211 IELNYVXXXXXXXXXXXXLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
             +E NYV            +N +++  L++AKAQG LHET+LDRRSKMKADRYCK
Sbjct:   209 VEKNYVKKFQKFQDKKMRINQNDVKELEQAKAQGSLHETLLDRRSKMKADRYCK 262

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q14331 FRG1 "Protein FRG1" [Homo sapiens (taxid:9606)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 114/265 (43%), Positives = 160/265 (60%)

Query:     1 MSEYQAVKRGXXXXXXXXXXXXXXXXXSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
             M+EY  VK                    D +      ++   DI     W  V +  +I 
Sbjct:     1 MAEYSYVK-STKLVLKGTKTKSKKKKSKDKKRKREEDEETQLDIVGI--WWTVTNFGEIS 57

Query:    61 GAISIEFGKRTFVSALDNGLFILGAIHED-KEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
             G I+IE  K T++ ALDNGLF LGA H++  EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct:    58 GTIAIEMDKGTYIHALDNGLFTLGAPHKEVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117

Query:   120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
              I+ +G V GRSDA+GP EQWEPVF++  MALL +N CF+  +E  D I A S+ AG+ E
Sbjct:   118 GINSDGLVVGRSDAIGPREQWEPVFQNGKMALLASNSCFIRCNEAGD-IEAKSKTAGEEE 176

Query:   180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVXXXXXXXXXXXXLNSDNIAVLKE 239
             M+K+RS +   +   K DDIPEE++ N +   E+NYV            ++ ++  +LK+
Sbjct:   177 MIKIRSCAE--RETKKKDDIPEEDKGN-VKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233

Query:   240 AKAQGYLHETMLDRRSKMKADRYCK 264
             A+  G+LHET+LDRR+K+KADRYCK
Sbjct:   234 ARKDGFLHETLLDRRAKLKADRYCK 258

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

MGI|MGI:893597 Frg1 "FSHD region gene 1" [Mus musculus (taxid:10090)]

 Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
 Identities = 112/265 (42%), Positives = 157/265 (59%)

Query:     1 MSEYQAVKRGXXXXXXXXXXXXXXXXXSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
             M+EY  VK                    D +      ++   DI     W  V +  +I 
Sbjct:     1 MAEYSYVK-STKLVLKGTKAKSKKKKSKDKKRKREEDEETQLDIVGI--WWTVSNFGEIS 57

Query:    61 GAISIEFGKRTFVSALDNGLFILGAIHED-KEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
             G I+IE  K  ++ ALDNGLF LGA H +  EGPSP E FTA+ ++DS++A KSG+ KYL
Sbjct:    58 GTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGKYL 117

Query:   120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNE 179
              I+ +G V GRSDA+GP EQWEPVF+D  MALL +N CF+  +E  D I A ++ AG+ E
Sbjct:   118 GINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-IEAKNKTAGEEE 176

Query:   180 MVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVXXXXXXXXXXXXLNSDNIAVLKE 239
             M+K+RS +   +   K DDIPEE++   +   E+NYV            ++ ++  +LK+
Sbjct:   177 MIKIRSCAE--RETKKKDDIPEEDK-GSVKQCEINYVKKFQSFQDHKLKISKEDSKILKK 233

Query:   240 AKAQGYLHETMLDRRSKMKADRYCK 264
             A+  G+LHET+LDRR+K+KADRYCK
Sbjct:   234 ARKDGFLHETLLDRRAKLKADRYCK 258

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0042254 "ribosome biogenesis" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

ZFIN|ZDB-GENE-050417-324 zgc:112426 "zgc:112426" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 104/216 (48%), Positives = 144/216 (66%)

Query:    49 GWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSK 108
             GW  VK   ++ G ++IE  K +++ ALD GLF +G+ H++ EGP P E FTAI ++DS+
Sbjct:    44 GWWTVKCFGEVTGTVAIEMHKNSYIHALDTGLFTVGSPHKEDEGPDPPEQFTAIKLSDSR 103

Query:   109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSI 168
             +A KSG+ KYL I+  G V GRSDA+G  EQWEPVF++  MALL AN CF+S SE  D I
Sbjct:   104 IALKSGYGKYLGINSEGVVVGRSDAIGSREQWEPVFQNGKMALLAANSCFISYSESGD-I 162

Query:   169 VATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVXXXXXXXXXXXX 228
             VA ++ AG+ EM+K+RS +   + + + DDI +E+R + + + ELNYV            
Sbjct:   163 VAKNKTAGEEEMIKIRSCTE--REVKRKDDIADEDRGD-VKNCELNYVKKFQSFQDRKLR 219

Query:   229 LNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
             LN ++   LK+A+  G  HE +LDRRSKMKADRYCK
Sbjct:   220 LNEEDSGSLKKARTDGKFHEALLDRRSKMKADRYCK 255

GO:0005575 "cellular_component" evidence=ND

RGD|1585495 Frg1 "FSHD region gene 1" [Rattus norvegicus (taxid:10116)]

 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 111/268 (41%), Positives = 158/268 (58%)

Query:     1 MSEYQAVKRGXXXXXXXXXXXXXXXXXSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIV 60
             M+EY  VK                   ++ Q H  +S Q   DI     W  V +  +I 
Sbjct:     1 MAEYSYVK-STKLVLKGTKAKSKREKQANKQKH-PDSLQAQLDIVGI--WWTVSNFGEIS 56

Query:    61 GAISIEFGKRTFVSALDNGLFILGAIHED-KEGPSPEEIFTAILVNDS--KVAFKSGFDK 117
             G I+IE  K  ++ ALDNGLF LGA H +  EGPSP E FTA+ ++DS  ++A KSG+ K
Sbjct:    57 GTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSSQRIALKSGYGK 116

Query:   118 YLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGK 177
             YL I+ +G V GRSDA+GP EQWEPVF+D  MALL +N CF+  +E  D I A ++ AG+
Sbjct:   117 YLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-IEAKNKTAGE 175

Query:   178 NEMVKLRSNSLHLKNLDKDDDIPEEERTN-KLSDIELNYVXXXXXXXXXXXXLNSDNIAV 236
              EM+K+RS +   +   K DDI EE++ + +  +I+                ++ ++  +
Sbjct:   176 EEMIKIRSCAE--REAKKKDDIAEEDKGSVQQCEIKNTIRKKFQSFQDHKLKISKEDSKI 233

Query:   237 LKEAKAQGYLHETMLDRRSKMKADRYCK 264
             LK+A+  G+LHET+LDRR+K+KADRYCK
Sbjct:   234 LKKARKDGFLHETLLDRRAKLKADRYCK 261

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

WB|WBGene00014177 frg-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 89/280 (31%), Positives = 145/280 (51%)

Query:     2 SEYQAVKRGXXXXXXXXXXXXXXXXXSDTQAHGSNSKQVDPD-IENYAGWTQVKHIKDIV 60
             ++Y AVK G                    + +  + +++DPD +EN  GW ++    D+ 
Sbjct:     4 ADYSAVK-GGGLKLKAGKKNLFKVGKEKKKKNKDDKEKIDPDTVEN-GGWRKIADEFDMK 61

Query:    61 G----AISIEFGK---RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILV-NDSKVAFK 112
             G    AI +  G    RT+V+A+DNG F +G  H + EGP+PEEIF  +   +DSK++ K
Sbjct:    62 GGTNVAIEVASGAGSTRTYVAAMDNGKFTIGFPHPEGEGPNPEEIFALVKTPDDSKISLK 121

Query:   113 SGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQ-CFMS-VSEQDDSIVA 170
             +GF +Y+ +D   ++   ++A+G  EQ+  VF++   A    +   F+S V  ++  I  
Sbjct:   122 TGFGRYVGVDSEYQLVAMAEAIGSREQFVLVFQEGKTAFQAVSSPLFLSTVPNKEGHIYV 181

Query:   171 TSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVXXXXXXXXXXXXLN 230
              SR A +NEMV +R++++    +D       E+R N   + E  YV            L 
Sbjct:   182 ASRTATENEMVNIRTDAIQEGPVDWRS---VEDRKNA-RECETAYVKMYQHSKVD---LK 234

Query:   231 SDNIAV-------LKEAKAQGYLHETMLDRRSKMKADRYC 263
             + +IA+       +K+A+A G  HE +LDRR KMK+DRYC
Sbjct:   235 NRHIAIDVKDKKGVKKAQADGSAHELLLDRRMKMKSDRYC 274

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0051015 "actin filament binding" evidence=IDA

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0055120 "striated muscle dense body" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

POMBASE|SPBP23A10.12 frg1 "FRG1 family protein, involved in mRNA processing (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
 Identities = 55/241 (22%), Positives = 100/241 (41%)

Query:    36 NSKQVDPDIE---NYAGWTQVKHIKDIVG-AISIEFGKRTFVS-ALDNGLFILGAIHEDK 90
             N+K +   +E   N   WT    + ++ G A+  +      VS  ++        +  DK
Sbjct:    20 NTKSLQSSLESAENDPFWTDANELNELEGPAVIYKIDDDAGVSLGIEEVKESCVLLPLDK 79

Query:    91 EGPSPE---EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDD 147
                 PE   ++F   ++N++ +  KS   KY+S  K+G +    +AVG  EQW  + E+ 
Sbjct:    80 VSLEPELTRQVFLLSILNNT-ILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQW--IAENL 136

Query:   148 NMALLG----ANQCFMSVS--EQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPE 201
                       + + ++++S  +QD +I   S         ++R  +  LK          
Sbjct:   137 GSGFWAWKSVSTKKYLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKK--------- 187

Query:   202 EERTNKLSDIELNYVXXXXXXXXXXXXLNSDNIAVLKEAKAQGYLHETMLDRRSKMKADR 261
                 NK S  +   +            L++D    LK+A  +G LHE +LD R   ++D+
Sbjct:   188 ----NKSSLFDNPTIHSRQLESMAGRKLSTDEKKTLKKAFKEGVLHEALLDLRVSSRSDK 243

Query:   262 Y 262
             Y
Sbjct:   244 Y 244

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0006397 "mRNA processing" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

UNIPROTKB|G4N753 MGG_03612 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 112 (44.5 bits), Expect = 0.00034, P = 0.00034
 Identities = 50/213 (23%), Positives = 86/213 (40%)

Query:    62 AISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAI-LVNDSKVAFKSGFDKYLS 120
             A++ +   + F   ++N   I+       E     ++F A  +V      FK    KYL 
Sbjct:    80 ALACDAAGKVFTLPIEN---IVDGNPASAEPHDVRQVFVANKIVGTENYRFKGHHGKYLG 136

Query:   121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGAN---QCFMSVSEQDDSIV---ATSRK 174
              DK G ++  SDAV PLE +  +   D           + F++V E         A+S K
Sbjct:   137 CDKMGILSATSDAVSPLECFVLIATPDTPGTFQVQTLRETFIAVKEPKARAAGASASSSK 196

Query:   175 AGKNEMVKLRSNSLHLKNLDKDDDIPEEERTN---KLSDIEL--NYVXXXXXXXXXXXXL 229
             + K    ++R ++  +   +    I  + R     K+S  E     +            L
Sbjct:   197 SAKAAAPEVRGDASDI-TFETTLRIRMQARFKPRIKVSKEEKARERISRRELEEAVGRRL 255

Query:   230 NSDNIAVLKEAKAQGYLHETMLDRRSKMKADRY 262
               D + +LK A+ +G  HE +L+ + K K D+Y
Sbjct:   256 EDDEVRLLKRARREGDYHEKLLNLKIKSKHDKY 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.368    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      264       235   0.00088  113 3  11 23  0.49    33
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  21.98u 0.14s 22.12t   Elapsed:  00:00:01
  Total cpu time:  21.98u 0.14s 22.12t   Elapsed:  00:00:01
  Start:  Thu Aug 15 14:31:29 2013   End:  Thu Aug 15 14:31:30 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q14331	FRG1_HUMAN	No assigned EC number	0.5094	0.9734	0.9961	yes	N/A
P97376	FRG1_MOUSE	No assigned EC number	0.5018	0.9734	0.9961	yes	N/A
Q9VWA8	FRG1_DROME	No assigned EC number	0.5505	0.9810	0.9885	yes	N/A
O18282	FRG1_CAEEL	No assigned EC number	0.3405	0.9621	0.9270	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
pfam06229	189	pfam06229, FRG1, FRG1-like family	8e-76
cd00257	119	cd00257, Fascin, Fascin-like domain; members inclu	7e-07
cd00257	119	cd00257, Fascin, Fascin-like domain; members inclu	1e-05

>gnl|CDD|148061 pfam06229, FRG1, FRG1-like family

 Score =  228 bits (582), Expect = 8e-76
 Identities = 98/193 (50%), Positives = 133/193 (68%), Gaps = 4/193 (2%)

Query: 70  RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTG 129
            +++ ALDNGLF  G  H+  +GP P E+FTA+ V D K++FKSG+ KYL  DK+G ++ 
Sbjct: 1   ASYLEALDNGLFTTGEPHDVGDGPDPREVFTAVKVGDEKISFKSGYGKYLGCDKDGILSA 60

Query: 130 RSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLH 189
           RSDA+GP EQ+EPVF++   ALL +N CF+SV E  D IVA S+ AG+ EMV++RS++  
Sbjct: 61  RSDAIGPREQFEPVFQEGKPALLASNGCFLSVDEAGD-IVAKSKTAGEGEMVEIRSDA-- 117

Query: 190 LKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLHET 249
            +     D I  E R  K    E  YVKKFQK QDKK++L+ D +  LK+A+A+G LHE 
Sbjct: 118 SREFKTTDRIRMEAR-FKPRIKESKYVKKFQKIQDKKLRLSDDEVKRLKKARAEGNLHEE 176

Query: 250 MLDRRSKMKADRY 262
           +LDRR KMK D+Y
Sbjct: 177 LLDRRVKMKHDKY 189

The human FRG1 gene maps to human chromosome 4q35 and has been identified as a candidate for facioscapulohumeral muscular dystrophy. Currently, the function of FRG1 is unknown. Length = 189

>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)

 Score = 46.9 bits (112), Expect = 7e-07
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 7/119 (5%)

Query: 63  ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSID 122
           + +      ++SA   G      +  +++    +E FT    N  K A +S   KYLS D
Sbjct: 4   VVLRSVNGRYLSAEAGG----DKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSAD 59

Query: 123 KNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
            +G V           ++   F  D   AL   N  ++       ++ A+S   G +E+
Sbjct: 60  SDGGVQLEGH-PNADCRFTLEFHGDGKWALRAENGRYLGGD-GSGTLKASSETVGPDEL 116

Length = 119

>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 72  FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRS 131
           ++SA  +G   L               FT     D K A ++   +YL  D +G +   S
Sbjct: 55  YLSADSDGGVQLEGHPNADCR------FTLEFHGDGKWALRAENGRYLGGDGSGTLKASS 108

Query: 132 DAVGPLEQWEP 142
           + VGP E +E 
Sbjct: 109 ETVGPDELFEL 119

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	264
KOG3962|consensus	246		100.0
PF06229	191	FRG1: FRG1-like family; InterPro: IPR010414 This e	100.0
cd00257	119	Fascin Fascin-like domain; members include actin-b	99.84
PF06268	111	Fascin: Fascin domain; InterPro: IPR022768 This fa	99.77
cd00257	119	Fascin Fascin-like domain; members include actin-b	99.41
PF06229	191	FRG1: FRG1-like family; InterPro: IPR010414 This e	99.4
PF06268	111	Fascin: Fascin domain; InterPro: IPR022768 This fa	99.15
PF04601	142	DUF569: Protein of unknown function (DUF569); Inte	98.71
PF00167	122	FGF: Fibroblast growth factor; InterPro: IPR002348	97.97
cd00058	123	FGF Acidic and basic fibroblast growth factor fami	97.75
KOG3962|consensus	246		97.7
smart00442	126	FGF Acidic and basic fibroblast growth factor fami	97.67
PF04601	142	DUF569: Protein of unknown function (DUF569); Inte	97.6
PF14200	105	RicinB_lectin_2: Ricin-type beta-trefoil lectin do	97.41
PF00167	122	FGF: Fibroblast growth factor; InterPro: IPR002348	97.4
smart00791	139	Agglutinin Amaranthus caudatus agglutinin or amara	97.4
cd00058	123	FGF Acidic and basic fibroblast growth factor fami	97.05
smart00442	126	FGF Acidic and basic fibroblast growth factor fami	96.85
PF07468	153	Agglutinin: Agglutinin; InterPro: IPR008998 Agglut	96.77
KOG3885|consensus	155		95.79
KOG3885|consensus	155		95.67
smart00791	139	Agglutinin Amaranthus caudatus agglutinin or amara	95.46
PF07468	153	Agglutinin: Agglutinin; InterPro: IPR008998 Agglut	94.94
PF08555	98	DUF1754: Eukaryotic family of unknown function (DU	94.4
PF03498	150	CDtoxinA: Cytolethal distending toxin A/C family;	93.17
PF14200	105	RicinB_lectin_2: Ricin-type beta-trefoil lectin do	83.94
PF03664	271	Glyco_hydro_62: Glycosyl hydrolase family 62 ; Int	81.24
PF05270	142	AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP	80.02

>KOG3962|consensus

Probab=100.00  E-value=8.1e-66  Score=446.10  Aligned_cols=246  Identities=46%  Similarity=0.824  Sum_probs=226.3

Q ss_pred             cccceeeecCCCCccccccccccccCCCCCCCCCCCcCCCCCeeeccccCCCCCCEEEEeCCCcEEEEcCCCceEeeccC
Q psy2222           8 KRGKLVLKGEKPAKKKKKNKSDTQAHGSNSKQVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIH   87 (264)
Q Consensus         8 k~~kL~fKGdk~~kkkkk~~~~~~~~~~~~~~~~~d~~~~~~W~~~~~~~dI~Gp~~i~~~s~~yL~a~~~G~f~~~~~~   87 (264)
                      +++.|+|||+|+.++++++++++..      ..+++.++|++||.+....||.|.+.|.+.+++||.|++||+|++++||
T Consensus         1 ~~~~l~lk~~Kk~k~kkkk~kk~~~------~~~~~~~~~g~w~~~~~~~~~~g~v~ie~~~~~yl~a~dng~ft~g~ph   74 (246)
T KOG3962|consen    1 KSMGLKLKGDKKIKKKKKKNKKSKE------SSDEDAVNDGGWWDANELNDIEGTVAIEIDDGTYLGAMDNGLFTLGAPH   74 (246)
T ss_pred             CCCcceeecccccchhccccchhhh------hcchhhhcCCcceeccccceeeEEEEEEecCceEEEEEecCceeeccCC
Confidence            4789999999997765555444332      3578889999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCceEEeccCceeEEEecCCCe
Q psy2222          88 EDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDS  167 (264)
Q Consensus        88 ~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~~~~  167 (264)
                      +..++|+|.++|+++.++|++|+|||++|+||+|+++|.|+|+++|+|++|+|+++|+.|++++++.|++|+.+++.++ 
T Consensus        75 ~~~~gp~p~e~f~avki~dsrIaLKsGyGKYlsinsdglvvg~qeAvG~~EQw~~vFq~~r~a~~as~s~~~~~~e~~d-  153 (246)
T KOG3962|consen   75 DEVDGPEPEEQFMAVKISDSRIALKSGYGKYLSINSDGLVVGRQEAVGSREQWEPVFQEGRMALLASNSCFIRCNEAGD-  153 (246)
T ss_pred             ccccCCCchhhEEEEEccCceEEecccccceeeecCCccEEEehhhcCcHhhchhhhhccceEEeeccceeEEechhhc-
Confidence            9888999999999999999999999999999999999999999999999999999999999999999999999988876 


Q ss_pred             eEEecccCCCcceEEEEEcccccccCCCCCCCChhhhcCChhHHHHHHHHhhhhccCCceecCccchHHHHHHHhhchhH
Q psy2222         168 IVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIKLNSDNIAVLKEAKAQGYLH  247 (264)
Q Consensus       168 l~a~s~~~g~~e~~~iR~~a~~~~~~~~~~~~~~e~~~~~~~~~E~~~vk~~Q~~~~~~~~l~~~~~~~LkkA~~eG~lh  247 (264)
                      +.+-+.+++.+++..||.++......+.  ++|.|++| .+.+||.|||++||+|||++++++.+|++.||+|+++|.||
T Consensus       154 ~~va~kt~t~~~~ik~r~~~~~~~~~kd--~~~~edk~-~~~evE~nyvkkfq~fqd~kl~i~~~d~K~lkkA~kdG~lH  230 (246)
T KOG3962|consen  154 AEVASKTATEEPEIKIRSCAAQRDKKKD--TIPEEDKG-NVKEVEINYVKKFQSFQDRKLKIDKEDKKILKKAQKDGSLH  230 (246)
T ss_pred             hhhhcccCCCCceeecccchhhcccccC--CCcccccc-ccchhhHHHHHHHhhhhhcccccchhHHHHHHHHHhcchHH
Confidence            6667788999999999997765555443  77899999 99999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhccccccCC
Q psy2222         248 ETMLDRRSKMKADRYC  263 (264)
Q Consensus       248 E~lLDrR~K~K~Dryc  263 (264)
                      |+|||||+||||||||
T Consensus       231 EtLLDrR~k~ksDrYc  246 (246)
T KOG3962|consen  231 ETLLDRRVKMKSDRYC  246 (246)
T ss_pred             HHHHhhhhhhcccccC
Confidence            9999999999999999

>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD)

Probab=100.00  E-value=9.4e-61  Score=414.08  Aligned_cols=188  Identities=51%  Similarity=0.805  Sum_probs=78.8

Q ss_pred             cEEEEcCCCceEeeccCCCCCCCCccccEEEEEecC-CeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCce
Q psy2222          71 TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND-SKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNM  149 (264)
Q Consensus        71 ~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~d-t~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~  149 (264)
                      +||.|++||.|++++||+++|+|+|+|||+++++++ ++|+|||+||+||+||++|.|+|+++||||+|+|+|||++|++
T Consensus         2 syi~a~d~G~~t~~ePhd~~~~p~p~qV~va~~v~~~~~iafKs~~GkYLs~Dk~G~v~a~sdAiGp~E~f~~V~~~~~~   81 (191)
T PF06229_consen    2 SYIEALDNGLFTTGEPHDVGEGPDPRQVWVATRVPGDEKIAFKSGHGKYLSCDKDGIVSARSDAIGPQEQFEPVFQDGKP   81 (191)
T ss_dssp             -BEEE-TTS-EEE----SSS----TTT-EEEEE--SSS-EEEEETTS-BEEE-SSSBEEE--SS--TTTBEEEE-STT--
T ss_pred             ceeeeeccCCccccCCCcCCCCCChhHeEEEEEecCCCceEeeccCccEEEEcCCCcEEEEeecCCCceEEEEEECCCCe
Confidence            799999999999999999999999999999999954 4999999999999999999999999999999999999999999


Q ss_pred             EEec-cCceeEEEecCCCeeEEecccCCCcceEEEEEcccccccCCCCCCCChhhhcCChhHHHHHHHHhhhhccCCcee
Q psy2222         150 ALLG-ANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDIPEEERTNKLSDIELNYVKKFQKFQDKKIK  228 (264)
Q Consensus       150 alq~-~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~~~~~~~~~~~~~~e~~~~~~~~~E~~~vk~~Q~~~~~~~~  228 (264)
                      ++++ .|++||++++++. |+|++.+++++|+|.||.++.++.....  +++.++++ +++++|.+|+|+||+||+++++
T Consensus        82 a~~~~~~~~FLs~~~~~~-i~a~s~~a~~~e~~~iR~~~~~~~~~~~--~~~~~~r~-~~~~~e~~~~k~~q~~~~~~l~  157 (191)
T PF06229_consen   82 ALFSSSNNKFLSVDEEGD-IRADSKTAGENEMIKIRSDAEREFKTTD--RIRMQDRF-KPKQCESNYVKKFQKISDKELR  157 (191)
T ss_dssp             EEEE-TTS-BEEE-SSS--EEE--S---TTT--EEEE-S-----------------------------------------
T ss_pred             EEEecCCCeEEEEecccC-eeeccccCCCCceEEEEEeccccCCccc--cccccccC-CHHHHhhHHHHHHhhhhccccc
Confidence            9999 9999999999988 9999999999999999999998655443  55788899 9999999999999999999999


Q ss_pred             cCccchHHHHHHHhhchhHHHhhhhhhccccccC
Q psy2222         229 LNSDNIAVLKEAKAQGYLHETMLDRRSKMKADRY  262 (264)
Q Consensus       229 l~~~~~~~LkkA~~eG~lhE~lLDrR~K~K~Dry  262 (264)
                      |+++|++.|||||+||+|||+|||||+|||||||
T Consensus       158 l~~~e~~~LkkAr~eG~lhE~LLDrR~K~KsDry  191 (191)
T PF06229_consen  158 LSDDEVKELKKARKEGNLHEALLDRRSKMKSDRY  191 (191)
T ss_dssp             ----------------------------------
T ss_pred             cCHHHHHHHHHHHhcChHHHHHHHHHhhhcccCC
Confidence            9999999999999999999999999999999999

FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.

>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)

Probab=99.84  E-value=3e-20  Score=148.47  Aligned_cols=113  Identities=25%  Similarity=0.315  Sum_probs=99.1

Q ss_pred             EEeC--CCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEE
Q psy2222          65 IEFG--KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus        65 i~~~--s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~i  142 (264)
                      |.|.  .|.||++.+.| ..+.++   ++.+.++|+|.+++.+++.|+||+++|+||+++.+|.|+|+++ ++++|.|++
T Consensus         4 v~Lrs~~gkyl~~~~~g-~~v~a~---~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~g~l~~~~~-~~~~e~F~~   78 (119)
T cd00257           4 VVLRSVNGRYLSAEAGG-DKVDAN---RDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSDGGVQLEGH-PNADCRFTL   78 (119)
T ss_pred             EEEEEcCCCEEEEeccC-CEEEEc---CccCCCceEEEEEECCCCeEEEEECCCcEEEEECCCCEEecCC-CCCCcEEEE
Confidence            4444  49999999988 344333   4467779999999988889999999999999999999999999 999999999


Q ss_pred             EEe-CCceEEeccCceeEEEecCCCeeEEecccCCCcceEEE
Q psy2222         143 VFE-DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKL  183 (264)
Q Consensus       143 v~~-~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~i  183 (264)
                      ++. +|.|+|++.||+||++++.+. |.|++..++++|.|.+
T Consensus        79 e~~~~g~~al~~~~G~yl~~~~~g~-l~~~~~~~~~~e~f~~  119 (119)
T cd00257          79 EFHGDGKWALRAENGRYLGGDGSGT-LKASSETVGPDELFEL  119 (119)
T ss_pred             EECCCCeEEEEcCCCCEEeecCCCe-EEEecCCCCccceecC
Confidence            998 599999999999999998876 9999999999999964

>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins

Probab=99.77  E-value=8.7e-18  Score=133.60  Aligned_cols=109  Identities=28%  Similarity=0.403  Sum_probs=93.7

Q ss_pred             CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC-eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCc
Q psy2222          70 RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN  148 (264)
Q Consensus        70 ~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt-~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~  148 (264)
                      +.|+.+...|. .+.++   ....+.+|+|+|+...++ .|+|||++|+||+++.+|.|+|+++++++++.|+|+++++.
T Consensus         2 ~~~~~~~k~~~-~l~an---~~~~~~~e~f~le~~~~~~~v~lrs~~GkYls~~~~G~v~~~~~~~~~~~~F~i~~~~~~   77 (111)
T PF06268_consen    2 NGYLVSEKFGA-HLNAN---RASLSDWETFQLEFDDGSYKVALRSHNGKYLSVDSDGSVVADSETPGPDEFFEIEWHGGK   77 (111)
T ss_dssp             TEEEEETTCTC-BEEEE---ESSSSCGGSEEEEEETTEEEEEEECTTSEEEEEETTSEEEEEESSSSGGGCBEEEEETTE
T ss_pred             CcEEEEEEcCC-EEECC---hhcCcccEEEEEEEECCCCEEEEEcCCCCEEEEcCCCeEEecCCCCCCCcEEEEEECCCE
Confidence            35677776662 22222   234667899999988887 88999999999999999999999999999999999999888


Q ss_pred             eEEeccCceeEEEecCCCeeEEecccCCCcceEEE
Q psy2222         149 MALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKL  183 (264)
Q Consensus       149 ~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~i  183 (264)
                      +++++.||+||++...+. |.|+++.++.+|.|.+
T Consensus        78 ~~~~~~nGkYl~~~~~g~-l~a~~~~~~~~elf~~  111 (111)
T PF06268_consen   78 VALRASNGKYLSAGPNGQ-LKANATSPGKDELFEY  111 (111)
T ss_dssp             EEEECTTSCEEEEETTTE-EEEEESSSSGGGEEEE
T ss_pred             EEEECCCCCEEeeCCCCe-EEEcCCCCCcceEEeC
Confidence            889999999999999987 9999999999999974

The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.

>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)

Probab=99.41  E-value=1.9e-12  Score=103.35  Aligned_cols=78  Identities=18%  Similarity=0.294  Sum_probs=72.5

Q ss_pred             eEEEEecCCeEEEEecCC-cEEEeccCCCCCCceEEEEe-CCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNG-RVTGRSDAVGPLEQWEPVFE-DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G-~v~a~a~a~g~~E~f~iv~~-~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .++||+++|+||++..+| .|.|+++.++++|.|+++.. +|.++|++.||+||++++++. |.+++. ++++|.|.+..
T Consensus         3 ~v~Lrs~~gkyl~~~~~g~~v~a~~~~~~~~e~F~l~~~~~g~v~Lrs~~G~yls~~~~g~-l~~~~~-~~~~e~F~~e~   80 (119)
T cd00257           3 QVVLRSVNGRYLSAEAGGDKVDANRDSLKGDETFTLEFDNTGKYALRSHDGKYLSADSDGG-VQLEGH-PNADCRFTLEF   80 (119)
T ss_pred             EEEEEEcCCCEEEEeccCCEEEEcCccCCCceEEEEEECCCCeEEEEECCCcEEEEECCCC-EEecCC-CCCCcEEEEEE
Confidence            589999999999999999 99999999999999999877 899999999999999998886 899888 99999999987


Q ss_pred             cc
Q psy2222         186 NS  187 (264)
Q Consensus       186 ~a  187 (264)
                      +.
T Consensus        81 ~~   82 (119)
T cd00257          81 HG   82 (119)
T ss_pred             CC
Confidence            64

>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD)

Probab=99.40  E-value=9.2e-13  Score=114.58  Aligned_cols=144  Identities=19%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             cCCCCCeeeccccCCCCCCEEEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEE
Q psy2222          44 IENYAGWTQVKHIKDIVGAISIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLS  120 (264)
Q Consensus        44 ~~~~~~W~~~~~~~dI~Gp~~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs  120 (264)
                      +...|.|+....+++    ..|.|++  |+||+|+.+|.+++     .+++.+|+|.|+++...++ .++.+ .+++||+
T Consensus        24 p~p~qV~va~~v~~~----~~iafKs~~GkYLs~Dk~G~v~a-----~sdAiGp~E~f~~V~~~~~-~a~~~~~~~~FLs   93 (191)
T PF06229_consen   24 PDPRQVWVATRVPGD----EKIAFKSGHGKYLSCDKDGIVSA-----RSDAIGPQEQFEPVFQDGK-PALFSSSNNKFLS   93 (191)
T ss_dssp             --TTT-EEEEE--SS----S-EEEEETTS-BEEE-SSSBEEE-------SS--TTTBEEEE-STT---EEEE-TTS-BEE
T ss_pred             CChhHeEEEEEecCC----CceEeeccCccEEEEcCCCcEEE-----EeecCCCceEEEEEECCCC-eEEEecCCCeEEE
Confidence            345789997776544    4677777  99999999999888     6789999999999886554 55555 9999999


Q ss_pred             EecCCcEEEeccCCCCCCceEEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEEcccccccCCCCCCC-
Q psy2222         121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLKNLDKDDDI-  199 (264)
Q Consensus       121 ~d~~G~v~a~a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~~~~~~~~~~~~-  199 (264)
                      ++..+.|+|.+...++.|.|.|--                   +       +.. .+.+.+.||||+++.++..+.+-. 
T Consensus        94 ~~~~~~i~a~s~~a~~~e~~~iR~-------------------~-------~~~-~~~~~~~~~~~~r~~~~~~e~~~~k  146 (191)
T PF06229_consen   94 VDEEGDIRADSKTAGENEMIKIRS-------------------D-------AER-EFKTTDRIRMQDRFKPKQCESNYVK  146 (191)
T ss_dssp             E-SSS-EEE--S---TTT--EEEE---------------------------S----------------------------
T ss_pred             EecccCeeeccccCCCCceEEEEE-------------------e-------ccc-cCCccccccccccCCHHHHhhHHHH
Confidence            999989999999999988666421                   1       111 345566677776665554321000 


Q ss_pred             ---ChhhhcCChhHHHHHHHHhhhhccC
Q psy2222         200 ---PEEERTNKLSDIELNYVKKFQKFQD  224 (264)
Q Consensus       200 ---~~e~~~~~~~~~E~~~vk~~Q~~~~  224 (264)
                         ....+...+.+.|+..||+.+..|+
T Consensus       147 ~~q~~~~~~l~l~~~e~~~LkkAr~eG~  174 (191)
T PF06229_consen  147 KFQKISDKELRLSDDEVKELKKARKEGN  174 (191)
T ss_dssp             ----------------------------
T ss_pred             HHhhhhccccccCHHHHHHHHHHHhcCh
Confidence               1111223678889999999999887

FSHD is a dominant neuromuscular disorder caused by deletions in a number of tandem repeat units (called D4Z4) located on chromosome 4q35. D4Z4 contains a transcriptional silencer whose deletion causes the over-expression in skeletal muscle of 4q35 genes, including Frg1 [, ]. Frg1 is localised to nucleoli and appears to be a component of the human spliceosome, but its exact function is unknown [].; PDB: 2YUG_A.

>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins

Probab=99.15  E-value=2.5e-10  Score=90.63  Aligned_cols=91  Identities=22%  Similarity=0.350  Sum_probs=72.7

Q ss_pred             cCCCCCeeeccccCCCCCCEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEec
Q psy2222          44 IENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDK  123 (264)
Q Consensus        44 ~~~~~~W~~~~~~~dI~Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~  123 (264)
                      ..+++.|.......  ..-++|....|+||+++.+|..++     .++.+++++.|.++.. ++.+.|+.++|+||+++.
T Consensus        21 ~~~~e~f~le~~~~--~~~v~lrs~~GkYls~~~~G~v~~-----~~~~~~~~~~F~i~~~-~~~~~~~~~nGkYl~~~~   92 (111)
T PF06268_consen   21 LSDWETFQLEFDDG--SYKVALRSHNGKYLSVDSDGSVVA-----DSETPGPDEFFEIEWH-GGKVALRASNGKYLSAGP   92 (111)
T ss_dssp             SSCGGSEEEEEETT--EEEEEEECTTSEEEEEETTSEEEE-----EESSSSGGGCBEEEEE-TTEEEEECTTSCEEEEET
T ss_pred             CcccEEEEEEEECC--CCEEEEEcCCCCEEEEcCCCeEEe-----cCCCCCCCcEEEEEEC-CCEEEEECCCCCEEeeCC
Confidence            34567888764443  122234433499999999998777     3456889999999988 678999999999999999


Q ss_pred             CCcEEEeccCCCCCCceEE
Q psy2222         124 NGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus       124 ~G~v~a~a~a~g~~E~f~i  142 (264)
                      .|.|.|++++++++|.|++
T Consensus        93 ~g~l~a~~~~~~~~elf~~  111 (111)
T PF06268_consen   93 NGQLKANATSPGKDELFEY  111 (111)
T ss_dssp             TTEEEEEESSSSGGGEEEE
T ss_pred             CCeEEEcCCCCCcceEEeC
Confidence            9999999999999999985

The fascins are a structurally unique and evolutionarily conserved group of actin cross-linking proteins. Fascins function in the organisation of two major forms of actin-based structures: dynamic, cortical cell protrusions and cytoplasmic microfilament bundles. The cortical structures, which include filopodia, spikes, lamellipodial ribs, oocyte microvilli and the dendrites of dendritic cells, have roles in cell-matrix adhesion, cell interactions and cell migration, whereas the cytoplasmic actin bundles appear to participate in cell architecture []. Dictyostelium hisactophilin, another actin-binding protein, is a submembranous pH sensor that signals slight changes of the H+ concentration to actin by inducing actin polymerisation and binding to microfilaments only at pH values below seven []. Members of this family are histidine rich, typically contain the repeated motif of HHXH []. ; GO: 0030674 protein binding, bridging, 0051015 actin filament binding; PDB: 1DFC_B 3P53_B 3LLP_A 1HCE_A 1HCD_A.

>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins

Probab=98.71  E-value=5.2e-07  Score=75.08  Aligned_cols=97  Identities=20%  Similarity=0.312  Sum_probs=71.3

Q ss_pred             EEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC--eEEEEecCCeEEEEecCC-------c--EEEe
Q psy2222          64 SIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS--KVAFKSGFDKYLSIDKNG-------R--VTGR  130 (264)
Q Consensus        64 ~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt--~~~lKs~~GkYLs~d~~G-------~--v~a~  130 (264)
                      .+-|.|  ++||.||++|.-+.-.+    .+.+..-+|++..+.+.  -|.|||+||+||++....       .  +...
T Consensus         9 ~VRLRS~~~kYL~ADeDg~~Vs~~~----~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v~Q~~   84 (142)
T PF04601_consen    9 HVRLRSHHGKYLHADEDGEGVSQDR----RGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRVVQTD   84 (142)
T ss_pred             EEEEEecCCCEEEEcCCCCeEEECC----CCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEEEecC
Confidence            666777  99999999995433222    23456678999888874  899999999999997653       2  2222


Q ss_pred             ccCCCCCCceEEEEeCCceEEeccCceeEEEecC
Q psy2222         131 SDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQ  164 (264)
Q Consensus       131 a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~  164 (264)
                      .+.....-.|+++..++.+-|++.+|+||-+++.
T Consensus        85 ~~~~d~~~~Wepvr~g~~V~Lr~~~gr~LRANG~  118 (142)
T PF04601_consen   85 PDRLDSSVEWEPVRDGFYVKLRHRSGRYLRANGG  118 (142)
T ss_pred             CccCCCCceEEEecCCCEEEEEecCCceEEcCCC
Confidence            2334445578888777788899999999999775

Some family members contain two copies of the region.

>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures

Probab=97.97  E-value=0.00022  Score=57.47  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=77.9

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      +.|.+.++.||....+|....     ..+..++..+|.++.+..+.|.|++ ..++||+.|..|.|.+.. ..++...|.
T Consensus         3 ~~Ly~~~~~~L~i~~~g~V~g-----t~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~ly~~~-~~~~~C~F~   76 (122)
T PF00167_consen    3 VQLYCRTGYFLQINPNGTVDG-----TGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGRLYGSK-NFNKDCVFR   76 (122)
T ss_dssp             EEEEETTSEEEEEETTSBEEE-----ESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTTSBEEEES-SBTGGGEEE
T ss_pred             EEEEECCCeEEEECCCCeEeC-----CCCcCcceeEEEEEeccceEEEEEEecceEEEEECCCCeEcccc-ccCCCceEE
Confidence            567888899999999996554     2344677889999999888999999 579999999999999964 466688888


Q ss_pred             EEEeCCce-EEecc---CceeEEEecCCC
Q psy2222         142 PVFEDDNM-ALLGA---NQCFMSVSEQDD  166 (264)
Q Consensus       142 iv~~~g~~-alq~~---ng~fLs~~~~~~  166 (264)
                      -.+.++.| .+.+.   ++.||+++..|.
T Consensus        77 e~~~~n~y~~~~s~~~~~~~yla~~~~G~  105 (122)
T PF00167_consen   77 EELLENGYNTYESAKYGRGWYLAFNRRGK  105 (122)
T ss_dssp             EEEETTSEEEEEESTTGTTEBCEBCTTSB
T ss_pred             EEEccCCEEEEEeccCCccEEEEECCCCC
Confidence            77765444 45554   589999999886

Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....

>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin

Probab=97.75  E-value=0.0013  Score=53.42  Aligned_cols=115  Identities=16%  Similarity=0.219  Sum_probs=81.6

Q ss_pred             EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEE
Q psy2222          64 SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus        64 ~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~i  142 (264)
                      .|.+.++.||..+.+|...-     ..+..++.-+|.+..+..+.|.||+ ..++||+.|+.|.|.+.. ..+....|.-
T Consensus         2 qLy~~~~~~L~I~~dG~V~G-----t~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~ly~s~-~~~~dC~F~E   75 (123)
T cd00058           2 QLYCRTGFHLQILPDGTVDG-----TRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGKLYGSK-GFTEECLFRE   75 (123)
T ss_pred             eEEEcCCeEEEEcCCCcEec-----ccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCCCCEEECC-CCCCCCEEEE
Confidence            45566688899998885443     2334567788888888888999999 499999999999999977 8888889977


Q ss_pred             EEeCCce-EEecc---CceeEEEecCCCeeEEe-cccCCCcceEEEE
Q psy2222         143 VFEDDNM-ALLGA---NQCFMSVSEQDDSIVAT-SRKAGKNEMVKLR  184 (264)
Q Consensus       143 v~~~g~~-alq~~---ng~fLs~~~~~~~l~a~-s~~~g~~e~~~iR  184 (264)
                      ...+..| .+.+.   .+.||+++..|..-.+. .........|-+|
T Consensus        76 ~~~~n~Y~~y~S~~~~~~~ylal~~~G~~rr~~~~~~~~~~~~Flp~  122 (123)
T cd00058          76 ELLENNYNTYASAKYRRRWYLALNKKGRPRRGQLTKKNQKASHFLPR  122 (123)
T ss_pred             EEccCCcEEEEEcccCCCcEEEECCCCCCccccccCCCCcceEEEeC
Confidence            6664333 44444   47899999888523332 2223344555554

The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).

>KOG3962|consensus

Probab=97.70  E-value=0.00015  Score=64.32  Aligned_cols=80  Identities=24%  Similarity=0.229  Sum_probs=64.8

Q ss_pred             eEEEEecCCeEEEEecCCcEEEec-----cCCCCCCceEEEEe-CCceEEeccCceeEEEecCCCeeEEecccCCCcceE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRS-----DAVGPLEQWEPVFE-DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV  181 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a-----~a~g~~E~f~iv~~-~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~  181 (264)
                      .|++.-..|.||.+-.+|..+--+     +.+.|.|+|.++.- |.+++|++.+|+||+++.++. |.|.+..||..|.|
T Consensus        49 ~v~ie~~~~~yl~a~dng~ft~g~ph~~~~gp~p~e~f~avki~dsrIaLKsGyGKYlsinsdgl-vvg~qeAvG~~EQw  127 (246)
T KOG3962|consen   49 TVAIEIDDGTYLGAMDNGLFTLGAPHDEVDGPEPEEQFMAVKISDSRIALKSGYGKYLSINSDGL-VVGRQEAVGSREQW  127 (246)
T ss_pred             EEEEEecCceEEEEEecCceeeccCCccccCCCchhhEEEEEccCceEEecccccceeeecCCcc-EEEehhhcCcHhhc
Confidence            566666668899998887654432     36778899988865 899999999999999999998 99999999999999


Q ss_pred             EEEEccc
Q psy2222         182 KLRSNSL  188 (264)
Q Consensus       182 ~iR~~a~  188 (264)
                      .+=.|..
T Consensus       128 ~~vFq~~  134 (246)
T KOG3962|consen  128 EPVFQEG  134 (246)
T ss_pred             hhhhhcc
Confidence            8754433

>smart00442 FGF Acidic and basic fibroblast growth factor family

Probab=97.67  E-value=0.0024  Score=52.11  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=79.2

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      +.|.+..+.||..+.+|...-     ..+..++.-+|.+..+..+.|.||+ ..++||+.|+.|.|.+... .+....|.
T Consensus         5 ~~Ly~~~~~~L~I~~~G~V~G-----t~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~ly~s~~-~~~dC~F~   78 (126)
T smart00442        5 RQLYCRNGQHLQILPDGTVDG-----TRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGKLYGSKN-FTEDCVFR   78 (126)
T ss_pred             EEEEeCCCeEEEEcCCceEec-----ccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCCEEEccc-CCCCcEEE
Confidence            567777788899988884332     1234566778888888778999999 5899999999999999766 67888886


Q ss_pred             EEEeCCce-EEecc--Cc-eeEEEecCCCeeEEec-ccCCCcceEEE
Q psy2222         142 PVFEDDNM-ALLGA--NQ-CFMSVSEQDDSIVATS-RKAGKNEMVKL  183 (264)
Q Consensus       142 iv~~~g~~-alq~~--ng-~fLs~~~~~~~l~a~s-~~~g~~e~~~i  183 (264)
                      =...+..| .+.+.  .+ -||+++..|..-.+.. ..-.....|-+
T Consensus        79 E~~~~n~y~~y~S~~~~~~~ylal~~~G~~r~~~~t~~~~~~~~Flp  125 (126)
T smart00442       79 EEMEENGYNTYASAKYRKRWYVALNKKGRPRRGQKTKPLQKASHFLP  125 (126)
T ss_pred             EEeccCCeEEEEEcccCCceEEEECCCCCEeEcccCCCCCcccEeee
Confidence            65554333 33332  33 8999998886334432 22334455543

Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.

>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins

Probab=97.60  E-value=0.00024  Score=59.25  Aligned_cols=58  Identities=21%  Similarity=0.335  Sum_probs=46.5

Q ss_pred             eEEEEecCCeEEEEecCCc-EEEeccCCCCCCceEEEEeC---CceEEeccCceeEEEecCC
Q psy2222         108 KVAFKSGFDKYLSIDKNGR-VTGRSDAVGPLEQWEPVFED---DNMALLGANQCFMSVSEQD  165 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~-v~a~a~a~g~~E~f~iv~~~---g~~alq~~ng~fLs~~~~~  165 (264)
                      .|.|||++|+||.+|.||. |+=.....+....|.++.-.   .-+-|++++|+||++.+..
T Consensus         9 ~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~   70 (142)
T PF04601_consen    9 HVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEP   70 (142)
T ss_pred             EEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCc
Confidence            7999999999999999986 44444555678889887542   4678999999999997654

Some family members contain two copies of the region.

>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A

Probab=97.41  E-value=0.004  Score=48.27  Aligned_cols=89  Identities=16%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             cccEEEEEec--CCeEEEEe-cCCeEEEEecCC-----cEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCC
Q psy2222          96 EEIFTAILVN--DSKVAFKS-GFDKYLSIDKNG-----RVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQD  165 (264)
Q Consensus        96 ~evf~~~~v~--dt~~~lKs-~~GkYLs~d~~G-----~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~  165 (264)
                      -|.|++.++.  ++.|.|++ +.|+||.+...+     .|+.....-.+..+|.|+.. +|.|.|++. .|++|.+.+.+
T Consensus         2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~~   81 (105)
T PF14200_consen    2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGNDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGGS   81 (105)
T ss_dssp             GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSSGGGEEEEEESTTSEEEEEETSTTEEEEEGGGS
T ss_pred             CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCCcCcEEEEEEecCCeEEEEECCCCcEEEECCCC
Confidence            4789999987  56899998 799999998643     34444444589999999988 688999987 58999996543


Q ss_pred             ----CeeEEec-ccCCCcceEEEE
Q psy2222         166 ----DSIVATS-RKAGKNEMVKLR  184 (264)
Q Consensus       166 ----~~l~a~s-~~~g~~e~~~iR  184 (264)
                          ..|..-. +.-+.+..|+|+
T Consensus        82 ~~~g~~v~~~~~~~~~~~Q~W~l~  105 (105)
T PF14200_consen   82 TANGTNVQQWEYDNGSDNQQWKLE  105 (105)
T ss_dssp             SSTTEBEEEEE-STSSGGGEEEEE
T ss_pred             CCCCCEEEEEeCCCCCccCEEEeC
Confidence                1233322 255677778774

...

>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures

Probab=97.40  E-value=0.0034  Score=50.44  Aligned_cols=76  Identities=16%  Similarity=0.229  Sum_probs=64.2

Q ss_pred             EEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEEc
Q psy2222         109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRSN  186 (264)
Q Consensus       109 ~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~  186 (264)
                      ++|=+.+|.||.+.++|.|.++.+..++...|+++.. .|.+.|++. .++||+++..|. |.+. ...+....|.-.+.
T Consensus         3 ~~Ly~~~~~~L~i~~~g~V~gt~~~~~~~s~~~i~~~~~g~V~i~~~~s~~YLcmn~~G~-ly~~-~~~~~~C~F~e~~~   80 (122)
T PF00167_consen    3 VQLYCRTGYFLQINPNGTVDGTGDDNSPYSVFEIHSVGFGVVRIRGVKSCRYLCMNKCGR-LYGS-KNFNKDCVFREELL   80 (122)
T ss_dssp             EEEEETTSEEEEEETTSBEEEESSTTSTTGEEEEEEEETTEEEEEETTTTEEEEEBTTSB-EEEE-SSBTGGGEEEEEEE
T ss_pred             EEEEECCCeEEEECCCCeEeCCCCcCcceeEEEEEeccceEEEEEEecceEEEEECCCCe-Eccc-cccCCCceEEEEEc
Confidence            5666767999999999999999999999999999987 689999986 799999999887 7774 44555888887763

Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....

>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain

Probab=97.40  E-value=0.0038  Score=51.50  Aligned_cols=114  Identities=13%  Similarity=0.165  Sum_probs=76.0

Q ss_pred             EEEeCC--CcEEEEcCCCc---eEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCC---
Q psy2222          64 SIEFGK--RTFVSALDNGL---FILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAV---  134 (264)
Q Consensus        64 ~i~~~s--~~yL~a~~~G~---f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~---  134 (264)
                      .+.|++  +.||.+...+.   ..++..    +-.+|.-.|.+....++.|.+|+ +.|||+....+ =+.|.++.+   
T Consensus         7 ~V~FKg~n~kYLry~~~~~~~~lqf~~d----dI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s~~-WI~a~s~d~~e~   81 (139)
T smart00791        7 YVLFKGNNQKYLRYQSIQQYGLLQFSAD----KILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLSHY-WITADANDPDEN   81 (139)
T ss_pred             EEEEEcCCCceEEEEeecccceeEeccc----ccCCcceeEEEEEcCCCcEEEEecCCCceEccCCC-EEEecCCCCccC
Confidence            677777  88988776443   233222    12344445555556777999999 79999988743 677877655   


Q ss_pred             -CCCCceEEEEe-CCceEEecc-CceeEEEecCCCe----eEEecccCCCcceEE
Q psy2222         135 -GPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDS----IVATSRKAGKNEMVK  182 (264)
Q Consensus       135 -g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~----l~a~s~~~g~~e~~~  182 (264)
                       ++-..|.|+.. ++.++||.. +|+|+.-...+..    |.|.+.+|.....+.
T Consensus        82 ~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~t~~~~~~~CL~A~~~~i~~~a~l~  136 (139)
T smart00791       82 KSACTLFRPLYVEMKKIRLLNVQLGHYTKRYTVGKSFVSCLNAASSQIDTKAVLH  136 (139)
T ss_pred             CCcccEEeEEeccCceEEEEEecCCceEEeecCCCCcccceeeccccccceeeEE
Confidence             46678999985 688999986 8888877554322    444555555544443

Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.

>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin

Probab=97.05  E-value=0.0058  Score=49.66  Aligned_cols=72  Identities=11%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             ecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEEc
Q psy2222         113 SGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRSN  186 (264)
Q Consensus       113 s~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~  186 (264)
                      +..|.||-++++|.|.++.+.-.+...|++... .|.+.|++. .++||+++..|. |.+.. ..+....|+-++.
T Consensus         5 ~~~~~~L~I~~dG~V~Gt~~~~~~~s~l~~~s~~~g~v~i~~v~s~~YLCmn~~G~-ly~s~-~~~~dC~F~E~~~   78 (123)
T cd00058           5 CRTGFHLQILPDGTVDGTRDDSSSYTILERIAVAVGVVSIKGVASCRYLCMNKCGK-LYGSK-GFTEECLFREELL   78 (123)
T ss_pred             EcCCeEEEEcCCCcEecccCCCCCCceEEEEECCCCEEEEEEcccceEEEECCCCC-EEECC-CCCCCCEEEEEEc
Confidence            444999999999999999998889999999876 699999997 899999999987 77655 6777777777664

The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).

>smart00442 FGF Acidic and basic fibroblast growth factor family

Probab=96.85  E-value=0.013  Score=47.74  Aligned_cols=77  Identities=12%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .++|=+.+|.||-+.++|.|.++.+...+...|++... .|.+.|++. .++||+++..|. |.+... .+.+..|+=.+
T Consensus         4 ~~~Ly~~~~~~L~I~~~G~V~Gt~~~~~~~~ile~~s~~~g~V~ik~~~s~~YLCmn~~G~-ly~s~~-~~~dC~F~E~~   81 (126)
T smart00442        4 LRQLYCRNGQHLQILPDGTVDGTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCGK-LYGSKN-FTEDCVFREEM   81 (126)
T ss_pred             EEEEEeCCCeEEEEcCCceEecccCCCCcceEEEEEeccCCEEEEEEcccceEEEECCCCC-EEEccc-CCCCcEEEEEe
Confidence            35666778899999999999999999999999999876 599999986 799999999997 766443 55666665554


Q ss_pred             c
Q psy2222         186 N  186 (264)
Q Consensus       186 ~  186 (264)
                      .
T Consensus        82 ~   82 (126)
T smart00442       82 E   82 (126)
T ss_pred             c
Confidence            3

Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.

>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types

Probab=96.77  E-value=0.048  Score=46.00  Aligned_cols=116  Identities=15%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             EEEeCC--CcEEEEcCCCc-----eEeeccCCCCCCCCccccEEEEE--ecCCeEEEEe-cCCeEEEEecCC--cEEEec
Q psy2222          64 SIEFGK--RTFVSALDNGL-----FILGAIHEDKEGPSPEEIFTAIL--VNDSKVAFKS-GFDKYLSIDKNG--RVTGRS  131 (264)
Q Consensus        64 ~i~~~s--~~yL~a~~~G~-----f~~~~~~~~~e~~~~~evf~~~~--v~dt~~~lKs-~~GkYLs~d~~G--~v~a~a  131 (264)
                      .+.++.  +.||.+...+.     +.++.    .+..+|.-.|.+++  ..++.|.+|+ ++|||+.-...+  =+.|.+
T Consensus         7 ~V~fkg~N~kYLry~~e~~~~~~~LqF~~----edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~WI~ada   82 (153)
T PF07468_consen    7 YVAFKGDNGKYLRYRTEDIQQYGYLQFSG----EDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYWIWADA   82 (153)
T ss_dssp             CEEEETTTS-EEEEEESSCTTCCEEEEEE----SSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--BEEEEE
T ss_pred             EEEEEcCCCcEEEEEecccccceeEEecC----CcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcEEEecC
Confidence            345554  88988776221     23322    24567888899988  6777999999 799999975555  588886


Q ss_pred             cCCC------CCCceEEEEeC----CceEEecc-CceeEEEecC----CCeeEEecccCCCcc--eEEE
Q psy2222         132 DAVG------PLEQWEPVFED----DNMALLGA-NQCFMSVSEQ----DDSIVATSRKAGKNE--MVKL  183 (264)
Q Consensus       132 ~a~g------~~E~f~iv~~~----g~~alq~~-ng~fLs~~~~----~~~l~a~s~~~g~~e--~~~i  183 (264)
                      +.+.      +-..|+|+.-+    ..++|+.. ||.|..--..    .+-|.|.+.+|..+.  .|+|
T Consensus        83 ~~p~ed~s~~~cTLF~Pv~vd~~~~~~i~l~~~~n~~~~~r~t~~~~~~sCL~A~~~~i~~~~~~~~~~  151 (153)
T PF07468_consen   83 DDPDEDQSKPSCTLFEPVKVDVKDFNVIALRNMQNGHFCKRLTYGGKFVSCLNAASSSIDREAKDVFTI  151 (153)
T ss_dssp             SSHHH-TCSTCGG-EEEEESCCCETTEEEEEETTTTEEEEEE--STTBSSEEEEEESS--CCGTT-EEE
T ss_pred             CCcccccCCCCceEEEEEEecCCCccEEEEEecCCceEEEEEccCCcceeeEeeccCcccccccceEEE
Confidence            6443      34459998653    56889986 7888766433    233666666665544  5544

Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.

>KOG3885|consensus

Probab=95.79  E-value=0.14  Score=43.35  Aligned_cols=100  Identities=19%  Similarity=0.263  Sum_probs=71.9

Q ss_pred             CCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCC
Q psy2222          61 GAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLE  138 (264)
Q Consensus        61 Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E  138 (264)
                      .+..+.+.+ |-+|..+.+|...-     .+|..++.-++.++.+.=+.|++|+ ..++||+-|++|.|.+. +--++..
T Consensus        26 r~~~LY~~t~g~hLqi~p~g~V~G-----t~~~~s~~siLei~sv~~GvV~IkGV~s~~YL~Mn~~G~LygS-~~~t~eC   99 (155)
T KOG3885|consen   26 RPKLLYCRNGGHFLRILPDGTVDG-----TRDRSDQHTIFEIITVAVGVVAIKGVESELYLAMNKEGKLYAS-KEFTEEC   99 (155)
T ss_pred             eeeEEEEcCCCEEEEEcCCCcccc-----ccccCCCceeEEEEEeeecEEEEEEeeceeEEEECCCCcEecC-CCCCccc
Confidence            456788888 88899998885433     2344566677777777767999999 69999999999999998 7777778


Q ss_pred             ceEE-EEeCCceEEecc----Cc-eeEEEecCCC
Q psy2222         139 QWEP-VFEDDNMALLGA----NQ-CFMSVSEQDD  166 (264)
Q Consensus       139 ~f~i-v~~~g~~alq~~----ng-~fLs~~~~~~  166 (264)
                      .|.= +..++=-+.++.    ++ -||+.+..|.
T Consensus       100 ~F~E~~~EN~YntY~S~~y~~~~~~yvaL~k~G~  133 (155)
T KOG3885|consen  100 KFKELVLENYYNTYASAKYRHNGEWFVALNKKGI  133 (155)
T ss_pred             eeEEEeecCCchheeehhhcccccEEEEECCCCC
Confidence            8843 344433233332    22 7888888775

>KOG3885|consensus

Probab=95.67  E-value=0.064  Score=45.44  Aligned_cols=74  Identities=16%  Similarity=0.290  Sum_probs=59.7

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeC-CceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFED-DNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~-g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      .+..+|. |.||-+.++|.|.++++--++.-.++|+.-+ |.++|+.. .+.||+.+..|. |.+. ..-+++..|+=+
T Consensus        29 ~LY~~t~-g~hLqi~p~g~V~Gt~~~~s~~siLei~sv~~GvV~IkGV~s~~YL~Mn~~G~-LygS-~~~t~eC~F~E~  104 (155)
T KOG3885|consen   29 LLYCRNG-GHFLRILPDGTVDGTRDRSDQHTIFEIITVAVGVVAIKGVESELYLAMNKEGK-LYAS-KEFTEECKFKEL  104 (155)
T ss_pred             EEEEcCC-CEEEEEcCCCccccccccCCCceeEEEEEeeecEEEEEEeeceeEEEECCCCc-EecC-CCCCccceeEEE
Confidence            3455555 9999999999999999999999999998774 89999986 899999999997 8776 444455555443

>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain

Probab=95.46  E-value=0.096  Score=43.34  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=52.9

Q ss_pred             eEEEEecCCeEEEEec---CCcEEEeccCCC-CCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccC
Q psy2222         108 KVAFKSGFDKYLSIDK---NGRVTGRSDAVG-PLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKA  175 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~---~G~v~a~a~a~g-~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~  175 (264)
                      .|+||+-+|+||..-.   +|-|.+.++-|+ |.-.|++... +|.++|++. +|+|....+. = |.|+++.+
T Consensus         7 ~V~FKg~n~kYLry~~~~~~~~lqf~~ddI~dp~v~~ev~~~~dg~V~ik~~~~nKfWr~s~~-W-I~a~s~d~   78 (139)
T smart00791        7 YVLFKGNNQKYLRYQSIQQYGLLQFSADKILDPLVQFEVFPTYNGLVHIKSNYTNKFWRLSHY-W-ITADANDP   78 (139)
T ss_pred             EEEEEcCCCceEEEEeecccceeEecccccCCcceeEEEEEcCCCcEEEEecCCCceEccCCC-E-EEecCCCC
Confidence            4899999999998865   466999999887 8888998877 799999986 8999876532 3 77776655

Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.

>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types

Probab=94.94  E-value=0.21  Score=42.16  Aligned_cols=68  Identities=26%  Similarity=0.289  Sum_probs=49.2

Q ss_pred             eEEEEecCCeEEEEec-----CCcEEEeccCCC-CCCceEEEE--e-CCceEEecc-CceeEEEec-CCCeeEEecccC
Q psy2222         108 KVAFKSGFDKYLSIDK-----NGRVTGRSDAVG-PLEQWEPVF--E-DDNMALLGA-NQCFMSVSE-QDDSIVATSRKA  175 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~-----~G~v~a~a~a~g-~~E~f~iv~--~-~g~~alq~~-ng~fLs~~~-~~~~l~a~s~~~  175 (264)
                      -|.||..+|+||..-.     .|-|.+.++-++ |.-.|++++  . +|.++|++. +|+|..... ++.=|.|+++..
T Consensus         7 ~V~fkg~N~kYLry~~e~~~~~~~LqF~~edi~dP~v~fev~~~~~~dG~V~Ir~~y~nKfWrr~s~n~~WI~ada~~p   85 (153)
T PF07468_consen    7 YVAFKGDNGKYLRYRTEDIQQYGYLQFSGEDIGDPYVKFEVEPSKTHDGLVHIRCCYNNKFWRRSSPNDYWIWADADDP   85 (153)
T ss_dssp             CEEEETTTS-EEEEEESSCTTCCEEEEEESSTT-CCG-EEEEE-SSTTT-EEEEETTTTEEEEESCCC--BEEEEESSH
T ss_pred             EEEEEcCCCcEEEEEecccccceeEEecCCcCCCCceeEEEEEcccCCCeEEEEeccCCceeEeCCCCCcEEEecCCCc
Confidence            4788889999999865     355888887666 999999998  3 899999996 899999633 322377776543

Lectins occur widely in plants, as well as some microorganisms and animal []. Agglutinin from Amaranthus caudatus (amaranthin) is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it can agglutinate A, B and O red blood cells, and has a carbohydrate-binding site that is specific for the methyl-glycoside of the T-antigen found linked to serine or threonine residues of cell surface glycoproteins []. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains []. Lectin B chains from ricin and related toxins also contain beta-trefoil domain, however they are not related to agglutinin, showing little sequence similarity [].; PDB: 1JLY_B 1JLX_B.

>PF08555 DUF1754: Eukaryotic family of unknown function (DUF1754); InterPro: IPR013865 This is a eukaryotic protein of unknown function

Probab=94.40  E-value=0.021  Score=44.31  Aligned_cols=16  Identities=63%  Similarity=0.839  Sum_probs=15.2

Q ss_pred             ccccccccceeeecCC
Q psy2222           3 EYQAVKRGKLVLKGEK   18 (264)
Q Consensus         3 ~y~~vk~~kL~fKGdk   18 (264)
                      +|+.|-.|+|+|||.+
T Consensus         1 eY~~v~gG~LKLKG~~   16 (98)
T PF08555_consen    1 EYSNVVGGKLKLKGGK   16 (98)
T ss_pred             CccccCCCCceeCCcc
Confidence            6999999999999988

>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp

Probab=93.17  E-value=0.34  Score=40.82  Aligned_cols=62  Identities=26%  Similarity=0.329  Sum_probs=42.7

Q ss_pred             CCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCc
Q psy2222          61 GAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGR  126 (264)
Q Consensus        61 Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~  126 (264)
                      |-|+|.-+. ++||++..+|.+....    ++.-...++|.+++...+.|+||+ ..|+-|.......
T Consensus        52 g~Vqf~n~~~~~CL~~~~~G~~~~~~----C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~  115 (150)
T PF03498_consen   52 GYVQFVNPKTGTCLAAYGNGVFHYKS----CDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSR  115 (150)
T ss_dssp             CEEEEEETTTSEEEEEETTCEEEE------TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTS
T ss_pred             CEEEEEcCCCCcceeecCCCeEeecc----cCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCc
Confidence            556666665 8899999999877510    344467899999999888999999 6788887766543

all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.

>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A

Probab=83.94  E-value=17  Score=27.68  Aligned_cols=72  Identities=11%  Similarity=0.055  Sum_probs=45.6

Q ss_pred             CCCeeeccccCCCCCCEEEEeC-CCcEEEEcCCC----ceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEE
Q psy2222          47 YAGWTQVKHIKDIVGAISIEFG-KRTFVSALDNG----LFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLS  120 (264)
Q Consensus        47 ~~~W~~~~~~~dI~Gp~~i~~~-s~~yL~a~~~G----~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs  120 (264)
                      .+-|......+ -.|...|... ++.||.+..++    .....-+   .. -.+.|.|.+++..++.|.|++ ..|++|.
T Consensus         2 nQ~W~~~~~~~-~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~---~~-~~~~Q~W~i~~~~~g~y~I~n~~s~~~Ld   76 (105)
T PF14200_consen    2 NQQWTFTPVGD-SDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWT---CN-GNDNQQWKIEPVGDGYYRIRNKNSGKVLD   76 (105)
T ss_dssp             GGEEEEEEEET-TTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEE---SS-SSGGGEEEEEESTTSEEEEEETSTTEEEE
T ss_pred             CCEEEEEEecC-CCCEEEEEECCCCCEEEeCCCCcCCCcEEEEec---CC-CCcCcEEEEEEecCCeEEEEECCCCcEEE
Confidence            35677655432 1344445443 49999987654    1111111   11 167899999999988899999 5699998


Q ss_pred             Eec
Q psy2222         121 IDK  123 (264)
Q Consensus       121 ~d~  123 (264)
                      +..
T Consensus        77 v~~   79 (105)
T PF14200_consen   77 VAG   79 (105)
T ss_dssp             EGG
T ss_pred             ECC
Confidence            853

...

>PF03664 Glyco_hydro_62: Glycosyl hydrolase family 62 ; InterPro: IPR005193 O-Glycosyl hydrolases 3

Probab=81.24  E-value=15  Score=33.62  Aligned_cols=106  Identities=24%  Similarity=0.339  Sum_probs=58.1

Q ss_pred             CCCCcCCCCCeeecccc-----CCC-CCCE--EEEeCC-CcEEE-EcCCCc-eEeeccCCCCCCCCc-------------
Q psy2222          40 VDPDIENYAGWTQVKHI-----KDI-VGAI--SIEFGK-RTFVS-ALDNGL-FILGAIHEDKEGPSP-------------   95 (264)
Q Consensus        40 ~~~d~~~~~~W~~~~~~-----~dI-~Gp~--~i~~~s-~~yL~-a~~~G~-f~~~~~~~~~e~~~~-------------   95 (264)
                      ...|+.+..||..|+.+     .+. .||+  -|++.+ .+||- |++||. +...-|  .+.=|.-             
T Consensus       105 Ts~DptnpngWSapq~lf~g~i~~~~~g~iD~~vI~D~~n~yLFfa~DnGkiYRs~~~--i~nFP~~fgs~~~vvmsd~~  182 (271)
T PF03664_consen  105 TSSDPTNPNGWSAPQPLFSGSISGSGTGPIDQWVICDDTNMYLFFAGDNGKIYRSSMP--IGNFPGGFGSSYTVVMSDTR  182 (271)
T ss_pred             cCCCCCCCccCCCCcccccccccCCCCCceeeEEEecCCceEEEEcCCCCcEEEeccc--hhhCCCCCCCceEEEEecCc
Confidence            45678889999998776     222 3565  355555 88976 889996 332211  1111111             


Q ss_pred             cccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe----CCceEEecc--CceeEEE
Q psy2222          96 EEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE----DDNMALLGA--NQCFMSV  161 (264)
Q Consensus        96 ~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~----~g~~alq~~--ng~fLs~  161 (264)
                      .-.|.+..|    +.++ +.++||-+         -||+|..++|-=-|.    +|.|.-++.  .+-|-..
T Consensus       183 ~nLFEA~~V----Ykv~-G~~~YLmi---------VEaiGs~gRyFRSfTa~sL~G~Wtp~A~tEsnPFAg~  240 (271)
T PF03664_consen  183 NNLFEAVQV----YKVK-GQNQYLMI---------VEAIGSDGRYFRSFTATSLDGPWTPQAATESNPFAGK  240 (271)
T ss_pred             cceeeeeEE----EEEc-CCceEEEE---------EEEecCCCcEEEeeecCCCCCcceeccccccCCcccc
Confidence            112322222    3343 36788876         255666555544443    577777764  3344443

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha -L-arabinofuranosidases (3.2.1.55 from EC) which are all members of glycoside hydrolase family 62 (GH62 from CAZY). This enzyme hydrolyzed aryl alpha-L-arabinofuranosides and cleaves arabinosyl side chains from arabinoxylan and arabinan.; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process

>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins

Probab=80.02  E-value=13  Score=31.05  Aligned_cols=69  Identities=14%  Similarity=0.080  Sum_probs=45.9

Q ss_pred             cccEEEEEecCC--eEEEEecC--CeEEEEecCCcEEEeccCCC----CCCceEEEEe---CCceEEecc--CceeEEEe
Q psy2222          96 EEIFTAILVNDS--KVAFKSGF--DKYLSIDKNGRVTGRSDAVG----PLEQWEPVFE---DDNMALLGA--NQCFMSVS  162 (264)
Q Consensus        96 ~evf~~~~v~dt--~~~lKs~~--GkYLs~d~~G~v~a~a~a~g----~~E~f~iv~~---~g~~alq~~--ng~fLs~~  162 (264)
                      ..+|++++--..  .|+|.|.+  |.||.. .++.|.-.....+    ...+|.++..   .|.++|++.  -|+||...
T Consensus        38 da~f~vvpGLa~~~~vSfES~~~PG~yLrh-~~~~v~l~~~d~s~~F~~dATF~~~~Gl~~~g~~sfeS~n~Pg~ylrh~  116 (142)
T PF05270_consen   38 DATFRVVPGLADSSCVSFESVNYPGYYLRH-SNFRVRLEKNDGSALFREDATFCPRPGLAGPGYVSFESYNYPGRYLRHY  116 (142)
T ss_dssp             GG-EEEEE-SS-TTCEEEEESSSTTEEEEE-ETTEEEEEE--SSHHHHHHT-EEEEE-SSSTTEEEEEESSSTTEEEEEE
T ss_pred             CceEEEEEccCCCCEEEEEECCCCCcEEEE-ECCEEEEeecCCCccccCCceEEEecCCCCCCcceEEEecCCCeEEEEE
Confidence            468999874433  79999987  999998 4556555554333    4568988875   466688886  58999987


Q ss_pred             cCC
Q psy2222         163 EQD  165 (264)
Q Consensus       163 ~~~  165 (264)
                      +..
T Consensus       117 ~~~  119 (142)
T PF05270_consen  117 NGE  119 (142)
T ss_dssp             TTE
T ss_pred             CCE
Confidence            754

L-Arabinose is a constituent of plant cell wall polysaccharides. It is found in a polymeric form in L-arabinan, in which the backbone is formed by 1,5-a- linked l-arabinose residues that can be branched via 1,2-a- and 1,3-a-linked l-arabinofuranose side chains. AbfB hydrolyses 1,5-a, 1,3-a and 1,2-a linkages in both oligosaccharides and polysaccharides, which contain terminal non-reducing l-arabinofuranoses in side chains [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3AKI_A 3AKF_A 3AKH_A 3AKG_A 2D44_A 1WD3_A 2D43_A 1WD4_A 3KMV_E.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
2yug_A	155	Solution Structure Of Mouse Frg1 Protein Length = 1		2e-37

>pdb|2YUG|A Chain A, Solution Structure Of Mouse Frg1 Protein Length = 155

Iteration: 1
 Score =  152 bits (384), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 97/137 (70%), Gaps = 2/137 (1%)
Query: 50  WTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIFTAILVNDSK 108
           W  V +  +I G I+IE  K  ++ ALDNGLF LGA H E  EGPSP E FTA+ ++DS+
Sbjct: 14  WWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSR 73
Query: 109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSI 168
           +A KSG+ KYL I+ +G V GRSDA+GP EQWEPVF+D  MALL +N CF+  +E  D I
Sbjct: 74  IALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-I 132
Query: 169 VATSRKAGKNEMVKLRS 185
            A ++ AG+ EM+K+RS
Sbjct: 133 EAKNKTAGEEEMIKIRS 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
2yug_A	155	Protein FRG1; spliceosome, facioscapulohumeral mus	1e-51
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	2e-12
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	8e-09
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	1e-07
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
3q7x_A	132	De novo designed beta-trefoil architecture with S	5e-07
3q7x_A	132	De novo designed beta-trefoil architecture with S	5e-06
1hcd_A	118	Hisactophilin; actin binding; NMR {Dictyostelium d	2e-05
3snv_A	143	Symfoil-4T/permutation #1 synthetic protein; beta-	2e-04

>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155

 Score =  164 bits (417), Expect = 1e-51
 Identities = 73/148 (49%), Positives = 99/148 (66%), Gaps = 2/148 (1%)

Query: 41  DPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIH-EDKEGPSPEEIF 99
              ++    W  V +  +I G I+IE  K  ++ ALDNGLF LGA H E  EGPSP E F
Sbjct: 5   SSGLDIVGIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQF 64

Query: 100 TAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFM 159
           TA+ ++DS++A KSG+ KYL I+ +G V GRSDA+GP EQWEPVF+D  MALL +N CF+
Sbjct: 65  TAVKLSDSRIALKSGYGKYLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFI 124

Query: 160 SVSEQDDSIVATSRKAGKNEMVKLRSNS 187
             +E    I A ++ AG+ EM+K+RS +
Sbjct: 125 RCNE-AGDIEAKNKTAGEEEMIKIRSCA 151

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493

 Score = 65.9 bits (160), Expect = 2e-12
 Identities = 22/137 (16%), Positives = 56/137 (40%), Gaps = 9/137 (6%)

Query: 55  HIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFT-AILVNDSKVAFKS 113
            ++     + ++      VS           +  +++  + +E F   I  +  K AF++
Sbjct: 255 ALEQSCAQVVLQAANERNVSTRQGM-----DLSANQDEETDQETFQLEIDRDTKKCAFRT 309

Query: 114 GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSR 173
              KY ++   G V   + +      ++  + D  + L  +N  F++  + +  + A+  
Sbjct: 310 HTGKYWTLTATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKK-NGQLAASVE 368

Query: 174 KAGKNEM--VKLRSNSL 188
            AG +E+  +KL +  +
Sbjct: 369 TAGDSELFLMKLINRPI 385

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493

 Score = 54.7 bits (131), Expect = 8e-09
 Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 12/135 (8%)

Query: 61  GAISIEFGKR----TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND----SKVAFK 112
            A+ I+FG       +++A   G      ++        ++I+T     D    + V  +
Sbjct: 8   EAVQIQFGLINCGNKYLTAEAFGF----KVNASASSLKKKQIWTLEQPPDEAGSAAVCLR 63

Query: 113 SGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATS 172
           S   +YL+ DK+G VT   +  GP  ++  V  DD    L +          +D +   +
Sbjct: 64  SHLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRYFGGTEDRLSCFA 123

Query: 173 RKAGKNEMVKLRSNS 187
           +     E   +    
Sbjct: 124 QTVSPAEKWSVHIAM 138

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493

 Score = 51.3 bits (122), Expect = 1e-07
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 1/87 (1%)

Query: 84  GAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPV 143
           G +       +    F  I   D ++  ++   K+++  KNG++    +  G  E +   
Sbjct: 321 GGVQSTASSKNASCYFD-IEWRDRRITLRASNGKFVTSKKNGQLAASVETAGDSELFLMK 379

Query: 144 FEDDNMALLGANQCFMSVSEQDDSIVA 170
             +  + +      F+   +   ++ A
Sbjct: 380 LINRPIIVFRGEHGFIGCRKVTGTLDA 406

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 10/128 (7%)

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
             I++      FV++  NG           E     E+F   L+N   + F+        
Sbjct: 343 RRITLRASNGKFVTSKKNGQLAASV-----ETAGDSELFLMKLINRPIIVFRGEHGFIGC 397

Query: 121 IDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEM 180
               G +     +    + ++  F D    +  +   + +V    DS V +S     +  
Sbjct: 398 RKVTGTLDANRSSY---DVFQLEFNDGAYNIKDSTGKYWTVG--SDSAVTSSGDTPVDFF 452

Query: 181 VKLRSNSL 188
            +    + 
Sbjct: 453 FEFCDYNK 460

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 4e-07
 Identities = 50/333 (15%), Positives = 103/333 (30%), Gaps = 111/333 (33%)

Query: 10  GKLVLKGEKPAKKKKKNKSDTQAH----GSNSK-------------QVDPDIENYAGWTQ 52
           GK  +  +     K + K D +       + +              Q+DP+  + +    
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS--DH 219

Query: 53  VKHIKDIVGAISIEFGKRTFVSA-LDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAF 111
             +IK  + +I  E  +R   S   +N L +L     +              V ++K   
Sbjct: 220 SSNIKLRIHSIQAEL-RRLLKSKPYENCLLVL----LN--------------VQNAKAW- 259

Query: 112 KSGFD---KYLSIDKNGRVTGRSDAVG-------PLEQWEPVF-EDDNMALLGANQCFMS 160
            + F+   K L   +  +VT   D +         L+        D+  +LL     ++ 
Sbjct: 260 -NAFNLSCKILLTTRFKQVT---DFLSAATTTHISLDHHSMTLTPDEVKSLL-LK--YLD 312

Query: 161 VSEQDD------------SIVATS-----------RKAGKNEMVKLRSNSLHLKNLD--- 194
              QD             SI+A S           +    +++  +  +SL    L+   
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAE 370

Query: 195 ------------KDDDIPEE--ER--TNKLSDIELNYVKKFQKF----QDKK---IKLNS 231
                           IP         + +    +  V K  K+    +  K   I + S
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 232 DNIAVLKEAKAQGYLHETMLDRRSKMKADRYCK 264
             + +  + + +  LH +++D  +  K   +  
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKT--FDS 461

>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Length = 132

 Score = 46.9 bits (111), Expect = 5e-07
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 84  GAIHEDKEGPSPEEIFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEP 142
           G +   ++   P   F      + +V  +S    ++L I+ +G V G  D   P  Q++ 
Sbjct: 67  GTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQI 126

Query: 143 VFEDD 147
             E +
Sbjct: 127 SPEGN 131

>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Length = 132

 Score = 43.9 bits (103), Expect = 5e-06
 Identities = 20/119 (16%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 72  FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGR 130
           F+    +G      +   ++   P   F      + +V  +S    ++L I+ +G V G 
Sbjct: 18  FLRINPDG-----TVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGT 72

Query: 131 SDAVGPLEQWEPVFEDDNMALL--GANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNS 187
            D   P  Q++   E +   LL       F+ ++  D ++  T  ++      ++    
Sbjct: 73  RDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINP-DGTVDGTRDRSDPGIQFQISPEG 130

>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Length = 118

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 8/117 (6%)

Query: 60  VGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
           +G  + +     F+SA    +      H           F  +  +  KVA K+   KYL
Sbjct: 1   MGNRAFKSHHGHFLSAEGEAV----KTHHGH--HDHHTHFH-VENHGGKVALKTHCGKYL 53

Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAG 176
           SI  + +V       G    +        +++ G +  ++S  +    +        
Sbjct: 54  SIGDHKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISA-DHHGHVSTKEHHDH 109

>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Length = 143

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 18/117 (15%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 39  QVDPD------IENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEG 92
           +++PD       +      Q +   +  G + ++  +      ++      G +   ++ 
Sbjct: 23  RINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPD----GTVDGTRDR 78

Query: 93  PSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN 148
                 F      + +V  KS    +YL I+ +G V G  D      Q++   E + 
Sbjct: 79  SDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNG 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
2yug_A	155	Protein FRG1; spliceosome, facioscapulohumeral mus	100.0
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	99.85
3llp_A	493	Fascin; beta-trefoil, actin bundling protein, canc	99.8
2yug_A	155	Protein FRG1; spliceosome, facioscapulohumeral mus	99.24
3q7x_A	132	De novo designed beta-trefoil architecture with S	97.93
3snv_A	143	Symfoil-4T/permutation #1 synthetic protein; beta-	97.87
3p6i_A	142	De novo designed beta-trefoil architecture with S	97.71
3p6j_A	142	De novo designed beta-trefoil architecture with S	97.7
1hcd_A	118	Hisactophilin; actin binding; NMR {Dictyostelium d	97.49
1nun_A	145	Fibroblast growth factor-10; beta-trefoil fold, im	97.25
1bfg_A	146	Basic fibroblast growth factor; 1.60A {Homo sapien	97.22
1rg8_A	146	Heparin-binding growth factor 1; beta-trefoil, hor	97.14
1q1u_A	144	FGF-12, fibrobast growth factor homologous factor	97.13
1jlx_A	303	Agglutinin, amaranthin, ACA; complex (lectin/sacch	97.12
2fdb_M	164	FGF8B, fibroblast growth factor 8 isoform B; beta-	97.07
1rg8_A	146	Heparin-binding growth factor 1; beta-trefoil, hor	96.94
1jlx_A	303	Agglutinin, amaranthin, ACA; complex (lectin/sacch	96.91
1qql_A	140	Fibroblast growth factor 7/1 chimera; beta-trefoil	96.87
1ihk_A	174	GLIA-activating factor; B-trefoil fold, hormone/gr	96.82
1nun_A	145	Fibroblast growth factor-10; beta-trefoil fold, im	96.79
3p6j_A	142	De novo designed beta-trefoil architecture with S	96.75
1q1u_A	144	FGF-12, fibrobast growth factor homologous factor	96.69
1qql_A	140	Fibroblast growth factor 7/1 chimera; beta-trefoil	96.6
3q7x_A	132	De novo designed beta-trefoil architecture with S	96.56
1bfg_A	146	Basic fibroblast growth factor; 1.60A {Homo sapien	96.56
1ijt_A	128	FGF4, fibroblast growth factor 4; B-trefoil fold,	96.56
1ihk_A	174	GLIA-activating factor; B-trefoil fold, hormone/gr	96.54
1hcd_A	118	Hisactophilin; actin binding; NMR {Dictyostelium d	96.35
3p6i_A	142	De novo designed beta-trefoil architecture with S	96.31
3f1r_A	211	FGF-20, fibroblast growth factor 20; beta-trefoil	96.27
2p39_A	155	Fibroblast growth factor 23; atypical beta-trefoil	96.27
3hbw_A	193	Fibroblast growth factor 13; beta-trefoil fold, al	96.26
1ijt_A	128	FGF4, fibroblast growth factor 4; B-trefoil fold,	96.22
3f1r_A	211	FGF-20, fibroblast growth factor 20; beta-trefoil	96.13
2fdb_M	164	FGF8B, fibroblast growth factor 8 isoform B; beta-	96.09
3snv_A	143	Symfoil-4T/permutation #1 synthetic protein; beta-	95.93
3hbw_A	193	Fibroblast growth factor 13; beta-trefoil fold, al	95.9
2p39_A	155	Fibroblast growth factor 23; atypical beta-trefoil	95.77
1pwa_A	162	FGF-19, fibroblast growth factor-19; beta trefoil,	95.71
3pg0_A	165	Threefoil; symmetric design, beta-trefoil, enginee	95.28
2p23_A	194	FGF-19, fibroblast growth factor 19; atypical beta	94.52
2p23_A	194	FGF-19, fibroblast growth factor 19; atypical beta	94.34
1pwa_A	162	FGF-19, fibroblast growth factor-19; beta trefoil,	94.21
1sr4_A	206	CDT A, cytolethal distending toxin subunit A; bact	93.74
1sr4_A	206	CDT A, cytolethal distending toxin subunit A; bact	89.67
3aj6_A	286	Main hemagglutinin component; toxin, beta-trefoil;	89.66
3vsf_A	526	Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana	88.11
3ef2_A	293	Agglutinin, lectin; beta-trefoil, calcium-binding,	86.2
3nbc_A	148	Ricin B-like lectin; lactose, sugar BIND protein;	86.01
1ybi_A	288	HA33A, HA33/A, non-toxin haemagglutinin HA34; beta	85.67
1sr4_C	166	CDT C, cytolethal distending toxin protein C; bact	85.04
3pg0_A	165	Threefoil; symmetric design, beta-trefoil, enginee	85.04
2f2f_C	186	CDT C, cytolethal distending toxin C; actinobacill	84.86
2x2s_A	153	Agglutinin, agglutinin SSA; fungal lectin, beta-tr	83.97
3aj6_A	286	Main hemagglutinin component; toxin, beta-trefoil;	82.65

>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=100.00  E-value=5.7e-37  Score=257.03  Aligned_cols=150  Identities=50%  Similarity=0.863  Sum_probs=140.4

Q ss_pred             CCCCCcCCCCCeeeccccCCCCCCEEEEeCCCcEEEEcCCCceEeeccCCC-CCCCCccccEEEEEecCCeEEEEecCCe
Q psy2222          39 QVDPDIENYAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHED-KEGPSPEEIFTAILVNDSKVAFKSGFDK  117 (264)
Q Consensus        39 ~~~~d~~~~~~W~~~~~~~dI~Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~-~e~~~~~evf~~~~v~dt~~~lKs~~Gk  117 (264)
                      ..++|+.  ++||+|+.++||+||++|++.+++||.|+++|.|++++|+.. .+.|+++|+|++++.++++|+|||++|+
T Consensus         5 ~~~~d~~--~gW~~~~~~~~i~g~~~i~~~~~~y~~A~~~G~~t~~~~~~~~~~~~~~~E~f~l~~~~~~~v~LRs~~Gk   82 (155)
T 2yug_A            5 SSGLDIV--GIWWTVSNFGEISGTIAIEMDKGAYIHALDNGLFTLGAPHREVDEGPSPPEQFTAVKLSDSRIALKSGYGK   82 (155)
T ss_dssp             CCSSCEE--TTEEECSSGGGCCEEEEEECSSSCBEEECTTSCEEECCCCSSSSCCCCTTTCEEEEECSSSCEEEEETTSC
T ss_pred             ccCCccc--CcEEecCchhcCCCCEEEEeCCCCEEEEEcCCcEEEccccccccCCCCCcceEEEEECCCCEEEEEeCCCC
Confidence            3456665  999999999999999999999999999999999999888764 5789999999999999999999999999


Q ss_pred             EEEEecCCcEEEeccCCCCCCceEEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEEcccccc
Q psy2222         118 YLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSLHLK  191 (264)
Q Consensus       118 YLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~~~~  191 (264)
                      ||+++++|.|+|++++++++|+|+|++++|+|+||+.||+||++++++. |+|+++.++++|+|+||||+.++.
T Consensus        83 YLs~~~~G~v~a~a~~~g~~E~F~l~~~~G~~aLra~nG~yl~~~~~g~-l~a~a~~~~~~E~f~v~l~~~~~~  155 (155)
T 2yug_A           83 YLGINSDGLVVGRSDAIGPREQWEPVFQDGKMALLASNSCFIRCNEAGD-IEAKNKTAGEEEMIKIRSCAERET  155 (155)
T ss_dssp             BEEECSSSBEEECCSSCCTTTBEEEECSTTCCEEEETTSCBEEECSSSC-EEECCSCCCTTTCCEEEECSCCCC
T ss_pred             EEEecCCCcEEeccCCCCCCCEEEEEEECCEEEEEeCCCCEEEEcCCCc-EEEecCCCCCCcEEEEEEecccCC
Confidence            9999999999999999999999999999999999999999999999887 999999999999999999999863

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*

Probab=99.85  E-value=3.5e-21  Score=186.80  Aligned_cols=120  Identities=21%  Similarity=0.278  Sum_probs=101.9

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecC---C-eEEEEecCCeEEEEecCCcEEEeccCCCCCC
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND---S-KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLE  138 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~d---t-~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E  138 (264)
                      +.|+-..++||+|+..| |.+.+.   +..+..+|||+|+++++   + .|.||||+|+||+||++|.|+|++++++|.|
T Consensus        14 ~gl~~~~~~ylt~e~fg-~~vna~---~~~l~~rQvw~l~~~~~~~~~~~~~lks~~G~yL~~d~~G~v~~~~~~~~~~~   89 (493)
T 3llp_A           14 FGLINCGNKYLTAEAFG-FKVNAS---ASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDC   89 (493)
T ss_dssp             EEEECTTSCEEEECSGG-GCEEEE---ESSCCGGGCEEEC-----CCCCCBCEECTTSCEEEECTTSCEEEEESSCCGGG
T ss_pred             EEEEecCCceEEeeccC-CEEEec---cCCccceEEEEEEecCCCCCccEEEEecCCCcEeecCCCCcEEeCcccCCCCc
Confidence            55666669999999998 444333   33567799999999875   3 7999999999999999999999999999999


Q ss_pred             ceEEEEe-CCceEEec-cCceeEEEecCCCeeEEecccCCCcceEEEEEccc
Q psy2222         139 QWEPVFE-DDNMALLG-ANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSL  188 (264)
Q Consensus       139 ~f~iv~~-~g~~alq~-~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~  188 (264)
                      .|+|+++ ||+|+||+ .+|+||+.+++.  |.|+++++++.|+|.||+..-
T Consensus        90 ~f~~~~~~dG~w~lq~~~~g~yl~~~~~~--~~c~~~~~~~~~~w~~~la~h  139 (493)
T 3llp_A           90 RFLIVAHDDGRWSLQSEAHRRYFGGTEDR--LSCFAQTVSPAEKWSVHIAMH  139 (493)
T ss_dssp             CEEEEECTTSEEEEEETTTCCEEEEEBTE--EEEEESSCCGGGCEEEEECSC
T ss_pred             eEEEEECCCCeEEEEEcccCceecCCCce--EEEEeccCCccceeeeeeccC
Confidence            9999999 89999999 899999998763  999999999999999998655

>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A*

Probab=99.80  E-value=3.6e-19  Score=172.75  Aligned_cols=122  Identities=18%  Similarity=0.286  Sum_probs=107.7

Q ss_pred             CCEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC-eEEEEecCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        61 Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt-~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      +.+.|....++||+++++|.  +.++++   .++++|+|+++.++++ +|+||+++|+||+++.+|.|+|++++++++|.
T Consensus       261 ~qVaL~s~ngkyVsa~~gg~--l~An~~---~~~~~EtFql~~~~~~~~vaLRs~~GkYl~~~~~g~v~a~~~~~g~~E~  335 (493)
T 3llp_A          261 AQVVLQAANERNVSTRQGMD--LSANQD---EETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCY  335 (493)
T ss_dssp             CEEEEECTTSCEEECC-CCC--CEEEES---CCSGGGCEEEEECTTTCCEEEECTTSCEEEECTTSBEEEEESSCCGGGC
T ss_pred             CEEEEEecCCcEEEecCCce--EEeeCC---CCCCcEEEEEEEeCCCCEEEEEeCCCCEEEEeCCCcEEeccCCCCCcce
Confidence            33455545599999998875  444543   5899999999999974 99999999999999999999999999999999


Q ss_pred             eEEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEEccc
Q psy2222         140 WEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSL  188 (264)
Q Consensus       140 f~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~  188 (264)
                      |+|++++|+++|++.||+||+++.++. |.|+++.++++|+|.|++..+
T Consensus       336 F~i~~~~g~vaLkA~NGkyVsa~~~G~-L~An~~~~g~~E~F~l~l~nr  383 (493)
T 3llp_A          336 FDIEWRDRRITLRASNGKFVTSKKNGQ-LAASVETAGDSELFLMKLINR  383 (493)
T ss_dssp             BEEEEETTEEEEECTTSCEEEECTTSB-EEEEESSCCGGGCBEEEECSC
T ss_pred             EEEEeCCCeEEEEeCCCCEEEEcCCCE-EEEecCCCCCCeEEEEEECCC
Confidence            999999999999999999999999987 999999999999999998764

>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.24  E-value=5.6e-11  Score=99.04  Aligned_cols=92  Identities=15%  Similarity=0.246  Sum_probs=76.1

Q ss_pred             CcCCCCCeeeccccCCCCCCEEEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEE
Q psy2222          43 DIENYAGWTQVKHIKDIVGAISIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS  120 (264)
Q Consensus        43 d~~~~~~W~~~~~~~dI~Gp~~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs  120 (264)
                      .+...+.|......+   +  .|.|++  |+||+++.+|.+++     .++.++++|.|.++.. +++++||+.+|+||+
T Consensus        57 ~~~~~E~f~l~~~~~---~--~v~LRs~~GkYLs~~~~G~v~a-----~a~~~g~~E~F~l~~~-~G~~aLra~nG~yl~  125 (155)
T 2yug_A           57 GPSPPEQFTAVKLSD---S--RIALKSGYGKYLGINSDGLVVG-----RSDAIGPREQWEPVFQ-DGKMALLASNSCFIR  125 (155)
T ss_dssp             CCCTTTCEEEEECSS---S--CEEEEETTSCBEEECSSSBEEE-----CCSSCCTTTBEEEECS-TTCCEEEETTSCBEE
T ss_pred             CCCCcceEEEEECCC---C--EEEEEeCCCCEEEecCCCcEEe-----ccCCCCCCCEEEEEEE-CCEEEEEeCCCCEEE
Confidence            344567887655433   2  445554  99999999997777     4667889999999988 789999999999999


Q ss_pred             EecCCcEEEeccCCCCCCceEEEEe
Q psy2222         121 IDKNGRVTGRSDAVGPLEQWEPVFE  145 (264)
Q Consensus       121 ~d~~G~v~a~a~a~g~~E~f~iv~~  145 (264)
                      ++.+|.|+|+++.+++.|.|.+..+
T Consensus       126 ~~~~g~l~a~a~~~~~~E~f~v~l~  150 (155)
T 2yug_A          126 CNEAGDIEAKNKTAGEEEMIKIRSC  150 (155)
T ss_dssp             ECSSSCEEECCSCCCTTTCCEEEEC
T ss_pred             EcCCCcEEEecCCCCCCcEEEEEEe
Confidence            9999999999999999999999776

>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A

Probab=97.93  E-value=0.00051  Score=55.30  Aligned_cols=116  Identities=17%  Similarity=0.245  Sum_probs=83.5

Q ss_pred             EEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCce
Q psy2222          63 ISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQW  140 (264)
Q Consensus        63 ~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f  140 (264)
                      +.+.+.. |-||.-+.+|...-     ..+..++.-+|.+..+.-+.|++++ ..|.||+.+++|.|.++...-.+--.+
T Consensus         8 ~~~~~~~~g~~L~I~~dG~V~G-----t~~~~~~~s~l~~~~v~~G~V~I~g~~sg~yL~m~~~G~v~Gs~~~s~ec~fl   82 (132)
T 3q7x_A            8 VLLRSTETGQFLRINPDGTVDG-----TRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGTVDGTRDRSDPGIQF   82 (132)
T ss_dssp             EEEEETTTCCEEEECTTSBEEE-----ECCTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSBEEEECC-CCGGGCE
T ss_pred             heeeeccCcEEEEECCCCcEEe-----ecCCCCCCcEEEEEecccCEEEEEEEcccEEEEECCCCCEeeccCCCCCceeE
Confidence            4444444 88999999986654     1334567778888888777999999 699999999999999976643333345


Q ss_pred             EEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         141 EPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       141 ~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ++... .|.+.++.. .|.||+.+..|. +.+. ...++...|.=++
T Consensus        83 E~~~~~~g~v~ikg~~sg~YLamnk~G~-lygs-~~~~~eC~F~E~~  127 (132)
T 3q7x_A           83 QISPEGNGEVLLRSTETGQFLRINPDGT-VDGT-RDRSDPGIQFQIS  127 (132)
T ss_dssp             EEEEEETTEEEEEETTTCCEEEECTTSB-EEEE-CCTTCGGGCEEEE
T ss_pred             EEEeecCcEEEEEeccCCeEEEECCCCc-CcCC-CCCCCCCEEEEEE
Confidence            66554 588888875 799999999997 7664 3355566665444

>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}

Probab=97.87  E-value=0.00055  Score=55.87  Aligned_cols=114  Identities=15%  Similarity=0.165  Sum_probs=79.7

Q ss_pred             EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCce-E
Q psy2222          64 SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQW-E  141 (264)
Q Consensus        64 ~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f-~  141 (264)
                      .....+|-||..+.+|...-.     .+..++.-+|.+..+.-+.|+|++ ..|.||+.+++|.|.++.+- ++...| +
T Consensus        13 ~~~~~~g~~LqI~~dG~V~Gt-----~~~~~~~s~l~~~sv~~G~V~I~gv~sg~yL~m~~~G~v~Gs~~~-~~ec~flE   86 (143)
T 3snv_A           13 GNYKKGGQYLRINPDGTVDGT-----RDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDR-SDTHIQFQ   86 (143)
T ss_dssp             ------CCEEEECTTSBEEEE-----SCTTCTTSEEEEEEEETTEEEEEETTTTEEEEECTTSBEEEECCT-TCTTSEEE
T ss_pred             EeEEcCCEEEEECCCCCEeee-----cCCCCCceEEEEEeccCCeEEEEEEcccEEEeECCCCCEeecccC-CCcceEEE
Confidence            445566888999888865542     233456677888888778999999 69999999999999998764 444555 5


Q ss_pred             EEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         142 PVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       142 iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ++.. .+.+.+++. .|.||+.+..|. +.+. ...+.+..|.=++
T Consensus        87 ~~~e~~g~v~i~~~~sg~Ylamnk~Gr-l~Gs-~~~s~eC~F~E~~  130 (143)
T 3snv_A           87 ISPEGNGEVLLKSTETGQYLRINPDGT-VDGT-RDRSDTHIQFQIS  130 (143)
T ss_dssp             EEECSTTEEEEEETTTCCEEEECTTSB-EEEE-SCTTCTTCCEEEE
T ss_pred             EEecCCcEEEEEEeeCCEEEEEcCCCc-CcCc-CCCCCCeeEEEEE
Confidence            6655 577788875 789999999997 6654 3445555555544

>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A

Probab=97.71  E-value=0.0015  Score=53.32  Aligned_cols=97  Identities=15%  Similarity=0.254  Sum_probs=74.6

Q ss_pred             CCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCC
Q psy2222          61 GAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLE  138 (264)
Q Consensus        61 Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E  138 (264)
                      ++..|.+.. +-||.-+.+|...-.     .+..++.-+|.+..+.-+.|+|++ ..|.||+.+++|.|.++.+ .++..
T Consensus        41 ~~r~LYcr~~g~hLqI~~dG~V~Gt-----~~~~s~~s~Lei~sv~~GvV~I~Gv~tg~yL~Mn~dG~l~Gs~~-~s~ec  114 (142)
T 3p6i_A           41 GEVLLKSTETGQYLRINPDGTVDGT-----RDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRD-RSDTH  114 (142)
T ss_dssp             SCEEEEETTTCCEEEECTTSBEEEE-----CCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSBEEEECC-TTCTT
T ss_pred             ceEEEEEcCCCEEEEECCCCcCcCc-----CCCCCCceEEEEEeccCCEEEEEEecCceEEeECCCCCCccccC-CCCCe
Confidence            457899988 889999999865441     233456677888877777999999 6899999999999999766 44444


Q ss_pred             c-eEEEEe-CCceEEecc-CceeEEEec
Q psy2222         139 Q-WEPVFE-DDNMALLGA-NQCFMSVSE  163 (264)
Q Consensus       139 ~-f~iv~~-~g~~alq~~-ng~fLs~~~  163 (264)
                      . +++... .|-++|+.. .|.||+.++
T Consensus       115 ~flEi~~v~~G~V~Ikgv~Sg~YLaMn~  142 (142)
T 3p6i_A          115 IQFQISPEGNGEVLLKSTETGQYLRINP  142 (142)
T ss_dssp             CCEEEEECSSSCEEEEETTTTEEEEECC
T ss_pred             EEEEEEEEeCCEEEEEEEecceEEEECC
Confidence            5 456655 589999986 899999863

>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}

Probab=97.70  E-value=0.002  Score=52.50  Aligned_cols=102  Identities=15%  Similarity=0.213  Sum_probs=76.8

Q ss_pred             EEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEec-CCeEEEEecCCcEEEeccCCCCCCce
Q psy2222          63 ISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSG-FDKYLSIDKNGRVTGRSDAVGPLEQW  140 (264)
Q Consensus        63 ~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~-~GkYLs~d~~G~v~a~a~a~g~~E~f  140 (264)
                      ..|.+.. +-||.-+.+|...-.     .+..++.-+|.+..+.-+.|+|++. .|.||+.+++|.|.++.+ .++...|
T Consensus        33 ~~LYcr~~g~~LqI~~dG~V~Gt-----~~~~~~~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~l~Gs~~-~t~ecsf  106 (142)
T 3p6j_A           33 VLLKSTETGQYLRINPDGTVDGT-----RDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRD-RSDTHIQ  106 (142)
T ss_dssp             EEEEETTTCCEEEECTTSBEEEE-----CCTTCGGGCEEEEEEETTEEEEEETTTTEEEEECTTSBEEEECC-TTCGGGC
T ss_pred             EEEEEeCCCEEEEECCCCCEeee-----cCCCCCceEEEEEEccCCEEEEEEecCCEEEeECCCCCEeeccc-CCCCceE
Confidence            6788887 888888888865441     2334566778888877779999985 899999999999999766 3444555


Q ss_pred             -EEEEe-CCceEEecc-CceeEEEecCCCeeEEe
Q psy2222         141 -EPVFE-DDNMALLGA-NQCFMSVSEQDDSIVAT  171 (264)
Q Consensus       141 -~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~  171 (264)
                       +++.. .+.+.++.. .|.||+++..|. +.+.
T Consensus       107 lEi~~en~y~v~i~g~~sg~YLamnk~Gr-lygs  139 (142)
T 3p6j_A          107 FQISPEGNGEVLLKSTETGQYLRINPDGT-VDGT  139 (142)
T ss_dssp             EEEEECSTTCEEEEETTTCCEEEECTTSB-EEEE
T ss_pred             EEEEeecCcEEEEEEecCCEEEEECCCcC-CccC
Confidence             55555 477778864 799999999987 7664

>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A

Probab=97.49  E-value=0.0026  Score=48.26  Aligned_cols=93  Identities=18%  Similarity=0.219  Sum_probs=74.2

Q ss_pred             CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCce
Q psy2222          70 RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNM  149 (264)
Q Consensus        70 ~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~  149 (264)
                      |-||+|+..-.-+--.      -++----|-++.- +.+|+|||+.|+|+++.....|.-.-.--|....|-+.-..|++
T Consensus        11 gh~lsae~~~vkthhg------hhdhhthfhvenh-g~kvalrth~gkyvsigdhkqvylshh~hg~hslfhlehh~gkv   83 (118)
T 1hcd_A           11 GHFLSAEGEAVKTHHG------HHDHHTHFHVENH-GGKVALKTHCGKYLSIGDHKQVYLSHHLHGDHSLFHLEHHGGKV   83 (118)
T ss_dssp             TCEEEEETTEEEEECS------CSSCCCCCEEEEE-TTEEEEESSSSCEEEEEETTEEEEECCCSSSSSSBEEEEETTEE
T ss_pred             CeeeeccccccccccC------cccccceEEeecC-CceEEEEeccCcEEEecCCceEEEEeeecCcceeEeeeccCCEE
Confidence            8899998765433311      1233345666654 44999999999999999988898888889999999999999999


Q ss_pred             EEeccCceeEEEecCCCeeEE
Q psy2222         150 ALLGANQCFMSVSEQDDSIVA  170 (264)
Q Consensus       150 alq~~ng~fLs~~~~~~~l~a  170 (264)
                      .|+..+-.||+++.-+. ++.
T Consensus        84 sikghhhhyi~~d~hgh-v~t  103 (118)
T 1hcd_A           84 SIKGHHHHYISADHHGH-VST  103 (118)
T ss_dssp             EEECSTTCEEEECGGGC-EEE
T ss_pred             EEecccceEEeccCCcc-ccc
Confidence            99999999999999886 554

>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1

Probab=97.25  E-value=0.0055  Score=50.07  Aligned_cols=118  Identities=14%  Similarity=0.152  Sum_probs=83.1

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      ..|.+..+-||.-+.+|...-.     .+..++.-+|.+..+.-+.|+|++ ..|+||+.|+.|.|.+.. ..++...|.
T Consensus        17 ~~LY~~~g~~LqI~~dG~V~Gt-----~~~~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~Lygs~-~~~~eC~F~   90 (145)
T 1nun_A           17 RKLFSFTKYFLKIEKNGKVSGT-----KKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGKLYGSK-EFNNDCKLK   90 (145)
T ss_dssp             EEEEETTSCEEEECTTSCEEEE-----CCSCCTTSCEEEEEEETTEEEEEETTTTEEEEECTTSBEEEES-SCCTTSEEE
T ss_pred             EEEEEcCCeEEEECCCCcEeee-----cCCCCCceeEEEEEecCCeEEEEEcccCcEEEEcCCCCEeecC-CCCCCcEEE
Confidence            4788888889999999865541     334466778888888888999999 699999999999999964 577888885


Q ss_pred             EEEeCCce-EEecc------CceeEEEecCCCeeEEecc-cCCCcceEEEEEc
Q psy2222         142 PVFEDDNM-ALLGA------NQCFMSVSEQDDSIVATSR-KAGKNEMVKLRSN  186 (264)
Q Consensus       142 iv~~~g~~-alq~~------ng~fLs~~~~~~~l~a~s~-~~g~~e~~~iR~~  186 (264)
                      =.+.++.| +..+.      .+.||+++..|....+... .-.....|-+|..
T Consensus        91 E~~~en~Yn~Y~S~~~~~~~r~~yval~k~G~pr~g~~t~~~~~~~hFLp~~~  143 (145)
T 1nun_A           91 ERIEENGYNTYASFNWQHNGRQMYVALNGKGAPRRGQKTRRKNTSAHFLPMVV  143 (145)
T ss_dssp             EEECTTSCEEEEEEEEEETTEEEECCBCTTSCBCBGGGCCTTSGGGCEEEEEC
T ss_pred             EEEccCCcEEEEEeccCCCCceEEEEECCCCCCccCcccCCCCccccEEeecC
Confidence            55554333 33333      2589999888863333222 2234566777653

>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A

Probab=97.22  E-value=0.0066  Score=49.66  Aligned_cols=122  Identities=11%  Similarity=0.123  Sum_probs=85.4

Q ss_pred             CCCCCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCC
Q psy2222          58 DIVGAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVG  135 (264)
Q Consensus        58 dI~Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g  135 (264)
                      ++.-++.|.+.. +-||.-+.+|...-     ..+..++..+|.+..+.-+.|.||+ ..|+||+.|+.|.|.+... .+
T Consensus        16 ~~~r~~rLY~r~~g~~LqI~~dG~V~G-----t~~~~~~~s~l~i~sv~~G~V~I~gv~s~~YLcMn~~G~Lygs~~-~t   89 (146)
T 1bfg_A           16 HFKDPKRLYCKNGGFFLRIHPDGRVDG-----VREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGRLLASKS-VT   89 (146)
T ss_dssp             ---CCEEEEETTTTEEEEECTTSCEEE-----ECCTTCGGGCEEEEECSTTEEEEEETTTTEEEEECTTSCEEEESS-CC
T ss_pred             CcCccEEEEEcCCCEEEEECCCCeEEe-----ecCCCCCceEEEEEeccCCEEEEEEcccCcEEEEcCCCCEecccc-CC
Confidence            334467888887 78999998886554     1334567788999888888999999 6899999999999999665 67


Q ss_pred             CCCceEEEEeC-CceEEecc--CceeEEEecCCCeeEEeccc-CCCcceEEEEE
Q psy2222         136 PLEQWEPVFED-DNMALLGA--NQCFMSVSEQDDSIVATSRK-AGKNEMVKLRS  185 (264)
Q Consensus       136 ~~E~f~iv~~~-g~~alq~~--ng~fLs~~~~~~~l~a~s~~-~g~~e~~~iR~  185 (264)
                      ....|.=.+.+ +=-++.+.  .+.||+++..|....+.... -.....|-+|.
T Consensus        90 ~eC~F~E~~~eN~Yn~Y~S~~~~~~yvalnk~G~pk~G~~t~~~q~~~hFLP~~  143 (146)
T 1bfg_A           90 DECFFFERLESNNYNTYRSRKYTSWYVALKRTGQYKLGSKTGPGQKAILFLPMS  143 (146)
T ss_dssp             GGGCEEEEECTTSCEEEEESSSTTCBCCBCTTSSBCCGGGCCTTCGGGCEEEEE
T ss_pred             CCceEEEEEeecCceEEEECCCCCEEEEECCCCCCccCCcCCCCCceeEeEEee
Confidence            77788655554 33344443  47899999888633333222 23456666664

>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ...

Probab=97.14  E-value=0.014  Score=47.74  Aligned_cols=118  Identities=12%  Similarity=0.146  Sum_probs=85.4

Q ss_pred             CEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          62 AISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        62 p~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      ...|.+.. |.||.-+.+|...-.     .+..++..+|.+..+.-+.|+||+ ..|+||+.|+.|.|.+.. ..++...
T Consensus        17 ~~qLY~r~~g~~LqI~~dG~V~Gt-----~~~~~~~s~l~i~sv~~G~V~I~gv~s~~YLcMn~~G~Lygs~-~~t~eC~   90 (146)
T 1rg8_A           17 PKLLYCSNGGHFLRILPDGTVDGT-----RDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQ-TPNEECL   90 (146)
T ss_dssp             CEEEEETTTTEEEEECTTSCEEEE-----CCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSCEEEES-SCCGGGC
T ss_pred             EEEEEEcCCCEEEEECCCCcEeee-----ccCCCCceEEEEEeecCCeEEEEEcccCcEEEECCCCCEeecC-CCCCCce
Confidence            56888888 899999999965541     334567788888888888999999 599999999999999955 5777788


Q ss_pred             eEEEEeCCce-EEecc--C--ceeEEEecCCCeeEEeccc-CCCcceEEEEE
Q psy2222         140 WEPVFEDDNM-ALLGA--N--QCFMSVSEQDDSIVATSRK-AGKNEMVKLRS  185 (264)
Q Consensus       140 f~iv~~~g~~-alq~~--n--g~fLs~~~~~~~l~a~s~~-~g~~e~~~iR~  185 (264)
                      |.=.+.++.| +..+.  .  +.||+++..|....+.... -.....|-+|.
T Consensus        91 F~E~~~eN~YntY~S~~y~~~~~yvalnk~G~pr~G~rt~~~q~~~hFLpr~  142 (146)
T 1rg8_A           91 FLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPLP  142 (146)
T ss_dssp             EEEEEETTTEEEEEESTTGGGTCBCCBCTTSCBCCGGGCCTTCSTTCEEEEE
T ss_pred             EEEEEccCCceEEEEeEcCCCCEEEEECCCCCCccCcccCCCCceeeEEecc
Confidence            8655554444 45543  3  7899999888633443222 23456676664

>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1

Probab=97.13  E-value=0.01  Score=48.44  Aligned_cols=123  Identities=13%  Similarity=0.173  Sum_probs=85.1

Q ss_pred             CCCCCC-EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCC
Q psy2222          57 KDIVGA-ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAV  134 (264)
Q Consensus        57 ~dI~Gp-~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~  134 (264)
                      ..+.|. ..|.+.+|-||.-+.+|...-.     .+..++.-+|.+..+.-+.|+||+ ..|+||+.|+.|.|.+. ...
T Consensus         6 ~~l~g~~~~Ly~r~g~~LqI~~dG~V~Gt-----~~~~~~~sile~~sv~~g~V~I~gv~s~~YLcMn~~G~Lygs-~~~   79 (144)
T 1q1u_A            6 PQLKGIVTRLFSQQGYFLQMHPDGTIDGT-----KDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSS-DVF   79 (144)
T ss_dssp             CCCCCEEEEEEETTTEEEEECTTSCEEEE-----SCTTSGGGCEEEEEEETTEEEEEETTTCCEEEECTTSCEEEE-SSC
T ss_pred             chhcCceEEEEEcCCeEEEECCCCcEeee-----cCCCCCceeEEEEeccCCEEEEEEcccCcEEEEcCCCCEEec-ccC
Confidence            344453 4678888999999999965541     233456678888888778999999 69999999999999996 567


Q ss_pred             CCCCceEEEEeCCce-EEecc--------CceeEEEecCCCeeEEecc-cCCCcceEEEEE
Q psy2222         135 GPLEQWEPVFEDDNM-ALLGA--------NQCFMSVSEQDDSIVATSR-KAGKNEMVKLRS  185 (264)
Q Consensus       135 g~~E~f~iv~~~g~~-alq~~--------ng~fLs~~~~~~~l~a~s~-~~g~~e~~~iR~  185 (264)
                      ++...|.=.+.++.| +..+.        .+.||+++..|....+... .-.....|-+|.
T Consensus        80 s~eC~F~E~~~eN~YntY~S~~y~~~~~~r~~yvalnk~G~~r~G~~t~~~~~~~hFLpr~  140 (144)
T 1q1u_A           80 TPECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKP  140 (144)
T ss_dssp             CGGGCEEEEEETTTEEEEEEEEEECTTTCCEEECCBCTTSBBCCGGGCCTTSGGGCEEEEE
T ss_pred             CCCceEEEeeccCCceEEEEeeccCCCCCceEEEEECCCCCEecCcccCCCCceeeeEeee
Confidence            777888655554433 33331        3789999988863333222 223556677764

>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A

Probab=97.12  E-value=0.0027  Score=57.41  Aligned_cols=77  Identities=19%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             eEEEEecC-CeEEEEecC-----CcEEEeccC-CCCCCceEEEEe---CCceEEecc-CceeEEEe-cCCCeeEEecccC
Q psy2222         108 KVAFKSGF-DKYLSIDKN-----GRVTGRSDA-VGPLEQWEPVFE---DDNMALLGA-NQCFMSVS-EQDDSIVATSRKA  175 (264)
Q Consensus       108 ~~~lKs~~-GkYLs~d~~-----G~v~a~a~a-~g~~E~f~iv~~---~g~~alq~~-ng~fLs~~-~~~~~l~a~s~~~  175 (264)
                      -++|||-+ |+||---.+     |.|.++++. .+|..+|++++.   +|.++|+++ ||+|..-. +++.-|+|+++.+
T Consensus         6 ~~~lKs~~~~kYL~~~~d~~~~~G~l~f~~~~~~sp~t~~eve~~k~~~g~vhIR~~~n~kyW~R~~~~~~wIvA~~~ep   85 (303)
T 1jlx_A            6 IMCLKSNNHQKYLRYQSDNIQQYGLLQFSADKILDPLAQFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWITASANEP   85 (303)
T ss_dssp             EEEEEETTTTEEEEECCSSSTTTTBEEEEESSTTCTTCCEEEEECSSSTTCEEEEETTTCCEEEESSTTCCBEEEEESSC
T ss_pred             EEEEeecCccceeEEeccccccccEEEEcCccCCCCcccEEEEEeecCCCEEEEEecCCCceeeecCCCCceEEecCCCC
Confidence            38999966 999999888     999999998 999999999985   599999999 99999995 4444488886664


Q ss_pred             CC------cceEEEE
Q psy2222         176 GK------NEMVKLR  184 (264)
Q Consensus       176 g~------~e~~~iR  184 (264)
                      .+      .+.|++-
T Consensus        86 ~ed~d~~~ctlFkp~  100 (303)
T 1jlx_A           86 DENKSNWACTLFKPL  100 (303)
T ss_dssp             CCCTTSTTCCCEEEE
T ss_pred             CcccCcccccceEEE
Confidence            32      3556554

>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1

Probab=97.07  E-value=0.011  Score=49.20  Aligned_cols=126  Identities=13%  Similarity=0.145  Sum_probs=88.7

Q ss_pred             cCCCCCC----EEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC-eEEEEe-cCCeEEEEecCCcEE
Q psy2222          56 IKDIVGA----ISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKS-GFDKYLSIDKNGRVT  128 (264)
Q Consensus        56 ~~dI~Gp----~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt-~~~lKs-~~GkYLs~d~~G~v~  128 (264)
                      .+++.|+    ..|.+.. |-+|..+.+|.....     .+..++.-+|.+..++-+ .|+||+ ..|+||+.|+.|.|.
T Consensus        21 ~~~~~~~~~R~~qLY~rt~g~~LqI~~dG~V~Gt-----~~~~~~~s~L~~~s~~~g~~V~I~gv~s~~YLcMn~~G~Ly   95 (164)
T 2fdb_M           21 TDQLSRRLIRTYQLYSRTSGKHVQVLANKRINAM-----AEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLI   95 (164)
T ss_dssp             CCSSSCCCEEEEEEEETTTSSEEEECTTSCEEEE-----ECTTCGGGCEEEEEEETTTEEEEEETTTCCEEEECTTSCEE
T ss_pred             ccccCCCcceEEEEEEccCCeEEEECCCCcEEee-----ccCCCcceEEEEEEeccceEEEEEEeccCcEEEEcCCCCEe
Confidence            4555653    4677886 899999999966542     223455666766665555 899999 699999999999999


Q ss_pred             EeccCCCCCCceEEEEeC-CceEEecc--CceeEEEecCCCeeEEeccc-CCCcceEEEEEc
Q psy2222         129 GRSDAVGPLEQWEPVFED-DNMALLGA--NQCFMSVSEQDDSIVATSRK-AGKNEMVKLRSN  186 (264)
Q Consensus       129 a~a~a~g~~E~f~iv~~~-g~~alq~~--ng~fLs~~~~~~~l~a~s~~-~g~~e~~~iR~~  186 (264)
                      +.....+....|.=.+.+ +=-++.+.  .+.||+++..|....+.... -.....|-+|+.
T Consensus        96 gs~~~~~~eC~F~E~~~eN~Ynty~S~~~~~~yvaLnk~Grpr~g~rt~~~q~~~hFLpr~~  157 (164)
T 2fdb_M           96 AKSNGKGKDCVFTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRLP  157 (164)
T ss_dssp             EESCCCSGGGEEEEEECTTSCEEEEESSSTTCBCCBCTTSCBCCGGGCCTTSGGGCEEEECC
T ss_pred             ecCcCCCCCCEEEEEeccCCcEEEEEcccCCEEEEECCCCCCccCCcCCCCCceeeeEccCC
Confidence            988778888888555554 43345543  58999999988634443322 235677888754

>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ...

Probab=96.94  E-value=0.0088  Score=48.94  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=63.3

Q ss_pred             eEEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         108 KVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       108 ~~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      ..+|=+.+ |.||-+..+|.|.++.+.-++...|+++.. .|.++|++. .+.||+++..|. |.+.. ..+.+..|.=+
T Consensus        17 ~~qLY~r~~g~~LqI~~dG~V~Gt~~~~~~~s~l~i~sv~~G~V~I~gv~s~~YLcMn~~G~-Lygs~-~~t~eC~F~E~   94 (146)
T 1rg8_A           17 PKLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGL-LYGSQ-TPNEECLFLER   94 (146)
T ss_dssp             CEEEEETTTTEEEEECTTSCEEEECCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSC-EEEES-SCCGGGCEEEE
T ss_pred             EEEEEEcCCCEEEEECCCCcEeeeccCCCCceEEEEEeecCCeEEEEEcccCcEEEECCCCC-EeecC-CCCCCceEEEE
Confidence            46666766 999999999999999999899999999877 689999996 899999999997 87743 45666666655


Q ss_pred             Ec
Q psy2222         185 SN  186 (264)
Q Consensus       185 ~~  186 (264)
                      +.
T Consensus        95 ~~   96 (146)
T 1rg8_A           95 LE   96 (146)
T ss_dssp             EE
T ss_pred             Ec
Confidence            43

>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A

Probab=96.91  E-value=0.011  Score=53.49  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=77.3

Q ss_pred             CEEEEeCC---CcEEEEcCC-----CceEeeccCCCCCCCCccccEEEEEec--CCeEEEEec-CCeEEEE--ecCCcEE
Q psy2222          62 AISIEFGK---RTFVSALDN-----GLFILGAIHEDKEGPSPEEIFTAILVN--DSKVAFKSG-FDKYLSI--DKNGRVT  128 (264)
Q Consensus        62 p~~i~~~s---~~yL~a~~~-----G~f~~~~~~~~~e~~~~~evf~~~~v~--dt~~~lKs~-~GkYLs~--d~~G~v~  128 (264)
                      |.++.|+|   +.||.-...     |.+++...    +..+|.-.|.+++..  ++.|.+|+. +|||+.-  +...=|+
T Consensus         4 Pr~~~lKs~~~~kYL~~~~d~~~~~G~l~f~~~----~~~sp~t~~eve~~k~~~g~vhIR~~~n~kyW~R~~~~~~wIv   79 (303)
T 1jlx_A            4 PVIMCLKSNNHQKYLRYQSDNIQQYGLLQFSAD----KILDPLAQFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWIT   79 (303)
T ss_dssp             CSEEEEEETTTTEEEEECCSSSTTTTBEEEEES----STTCTTCCEEEEECSSSTTCEEEEETTTCCEEEESSTTCCBEE
T ss_pred             ceEEEEeecCccceeEEeccccccccEEEEcCc----cCCCCcccEEEEEeecCCCEEEEEecCCCceeeecCCCCceEE
Confidence            67778877   889887666     87777222    347889999999943  348999997 9999999  5667799


Q ss_pred             EeccCCCC------CCceEEEEe----CCceEEecc-CceeEEEecCC
Q psy2222         129 GRSDAVGP------LEQWEPVFE----DDNMALLGA-NQCFMSVSEQD  165 (264)
Q Consensus       129 a~a~a~g~------~E~f~iv~~----~g~~alq~~-ng~fLs~~~~~  165 (264)
                      |+++.+..      -..|.|+.-    .|+++||.. .|.||..-..+
T Consensus        80 A~~~ep~ed~d~~~ctlFkp~~v~~~~~~~~~f~~vq~g~~~~~~~~~  127 (303)
T 1jlx_A           80 ASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQNYTVG  127 (303)
T ss_dssp             EEESSCCCCTTSTTCCCEEEEESSTTCSSEEEEEETTTTEECEEECCS
T ss_pred             ecCCCCCcccCcccccceEEEEeccCCCceEEEEEEecCceEEeeecC
Confidence            99765542      467999975    489999986 89999987655

>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A

Probab=96.87  E-value=0.0043  Score=50.42  Aligned_cols=104  Identities=13%  Similarity=0.184  Sum_probs=74.1

Q ss_pred             CCCCC----CEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEec
Q psy2222          57 KDIVG----AISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRS  131 (264)
Q Consensus        57 ~dI~G----p~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a  131 (264)
                      +.+.|    +..|.+.+|-||.-+.+|...-.     .+..++..+|.+..+.-+.|+|++ ..|+||+.|+.|.|.+..
T Consensus         3 ~hl~G~~~R~~~LY~r~g~~L~I~~dG~V~Gt-----~~~~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~Lygs~   77 (140)
T 1qql_A            3 DYMEGGDIRVRRLFCRTQWYLRIDKRGKVKGT-----QEMRNSYNIMEIRTVAVGIVAIKGVESEYYLAMNKEGKLYAKQ   77 (140)
T ss_dssp             ------CEEEECCEETTTEEEEECTTCCEEEE-----SCTTCSTTCEEEEEEETTEEEEEETTTCCCCEECTTSCEECCS
T ss_pred             ccccCceeEEEEEEecCCeEEEECCCCeEEee-----cCCCCCceEEEEEeecCCEEEEEEcccCcEEEEcCCCCEEecc
Confidence            45566    34677778889999999865541     334466778888888888999999 589999999999999966


Q ss_pred             cCCCCCCceEEEEeCCce-EEecc-C---ceeEEEecCCC
Q psy2222         132 DAVGPLEQWEPVFEDDNM-ALLGA-N---QCFMSVSEQDD  166 (264)
Q Consensus       132 ~a~g~~E~f~iv~~~g~~-alq~~-n---g~fLs~~~~~~  166 (264)
                      . .++...|.=.+.++.| +..+. +   +.||+++..|.
T Consensus        78 ~-~~~eC~F~E~~~en~Yn~Y~S~~~~~r~~yval~k~G~  116 (140)
T 1qql_A           78 T-PNEECLFLERLEENHYNTYISKKHAEKNWFVGLKKNGS  116 (140)
T ss_dssp             S-CCGGGEEEEEECSSSCEEEEESTTTTTTCBCCBCTTSC
T ss_pred             c-CCCCCeEEEEEccCCcEEEEEeecCCCCEEEEECCCCC
Confidence            5 6677777554544433 35443 3   78999988885

>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A*

Probab=96.82  E-value=0.016  Score=48.71  Aligned_cols=117  Identities=14%  Similarity=0.183  Sum_probs=83.5

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      ..|.+.++-+|.-+.+|...-.     .+..++..+|.+..+.-+.|+||+ ..|+|||.|+.|.|.+ +...++...|.
T Consensus        30 ~qLY~r~g~~LqI~~dG~V~Gt-----~~~~s~~silei~sv~~g~V~I~gv~s~~YLcMn~~G~Lyg-s~~~t~eC~F~  103 (174)
T 1ihk_A           30 RQLYCRTGFHLEIFPNGTIQGT-----RKDHSRFGILEFISIAVGLVSIRGVDSGLYLGMNEKGELYG-SEKLTQECVFR  103 (174)
T ss_dssp             EEEEETTSCEEEECTTSCEEEE-----SSTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTCCEEE-ESSCCGGGCEE
T ss_pred             EEEEecCCcEEEECCCCcEEee-----cCCCCCcceEEEEeccCceEEEEEcccCcEEEEcCCCCEec-cccCCCCceeE
Confidence            4688888888999998865541     234567788888888888999999 6899999999999999 56677878885


Q ss_pred             EEEeCCce-EEecc--------CceeEEEecCCCeeEEec-ccCCCcceEEEEE
Q psy2222         142 PVFEDDNM-ALLGA--------NQCFMSVSEQDDSIVATS-RKAGKNEMVKLRS  185 (264)
Q Consensus       142 iv~~~g~~-alq~~--------ng~fLs~~~~~~~l~a~s-~~~g~~e~~~iR~  185 (264)
                      =.+.++.| +..+.        .+.||+++..|....+.. ..-.....|-+|.
T Consensus       104 E~~~eN~YntY~S~~y~~~~~~r~~yvaLnk~Grprrg~rtk~~q~~~hFLpr~  157 (174)
T 1ihk_A          104 EQFEENWYNTYSSNLYKHVDTGRRYYVALNKDGTPREGTRTKRHQKFTHFLPRP  157 (174)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCCEEECCBCTTSCBCCGGGCCTTSGGGCEEEEC
T ss_pred             EEEccCCceEEEeccccCCCCCceEEEEECCCCCCccccccCCCCeeeEEEecc
Confidence            55553333 34332        268999998875333322 2234567777773

>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1

Probab=96.79  E-value=0.017  Score=47.15  Aligned_cols=76  Identities=17%  Similarity=0.211  Sum_probs=63.2

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|=+.+|.||-+..+|.|.++.+.-++...|+++.. .|.++|++. .+.||+++..|. |.+.. ..+++..|.=++
T Consensus        16 ~~~LY~~~g~~LqI~~dG~V~Gt~~~~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~-Lygs~-~~~~eC~F~E~~   93 (145)
T 1nun_A           16 WRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGK-LYGSK-EFNNDCKLKERI   93 (145)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEECCSCCTTSCEEEEEEETTEEEEEETTTTEEEEECTTSB-EEEES-SCCTTSEEEEEE
T ss_pred             EEEEEEcCCeEEEECCCCcEeeecCCCCCceeEEEEEecCCeEEEEEcccCcEEEEcCCCC-EeecC-CCCCCcEEEEEE
Confidence            46777878999999999999999999899999999877 589999986 899999999997 77743 455666665554

>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic}

Probab=96.75  E-value=0.023  Score=46.25  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=61.1

Q ss_pred             cEEEEEecCCeEEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecc
Q psy2222          98 IFTAILVNDSKVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSR  173 (264)
Q Consensus        98 vf~~~~v~dt~~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~  173 (264)
                      .|.+.+..-...+|=+.. |.||-++++|.|.++.+.-.+.-.|++... .|.++|+.. .|.||+++++|. |.++..
T Consensus        22 ~~~~~~~~~~~~~LYcr~~g~~LqI~~dG~V~Gt~~~~~~~s~lei~sv~~G~V~L~g~~sg~yL~mn~~G~-l~Gs~~   99 (142)
T 3p6j_A           22 QFQISPEGNGEVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGT-VDGTRD   99 (142)
T ss_dssp             CEEEEECSTTCEEEEETTTCCEEEECTTSBEEEECCTTCGGGCEEEEEEETTEEEEEETTTTEEEEECTTSB-EEEECC
T ss_pred             EEEECcccCcEEEEEEeCCCEEEEECCCCCEeeecCCCCCceEEEEEEccCCEEEEEEecCCEEEeECCCCC-Eeeccc
Confidence            455555433467777765 999999999999999988889999999876 689999976 899999999997 877644

>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1

Probab=96.69  E-value=0.015  Score=47.47  Aligned_cols=76  Identities=11%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|=+.+|.||-+..+|.|.++.+.-++...|+++.. .|.++|+.. .+.||+.+..|. |.+. ...+.+..|.=++
T Consensus        12 ~~~Ly~r~g~~LqI~~dG~V~Gt~~~~~~~sile~~sv~~g~V~I~gv~s~~YLcMn~~G~-Lygs-~~~s~eC~F~E~~   89 (144)
T 1q1u_A           12 VTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGY-LYSS-DVFTPECKFKESV   89 (144)
T ss_dssp             EEEEEETTTEEEEECTTSCEEEESCTTSGGGCEEEEEEETTEEEEEETTTCCEEEECTTSC-EEEE-SSCCGGGCEEEEE
T ss_pred             eEEEEEcCCeEEEECCCCcEeeecCCCCCceeEEEEeccCCEEEEEEcccCcEEEEcCCCC-EEec-ccCCCCceEEEee
Confidence            35677778999999999999999998888999998876 588999986 899999999997 7774 3455556665554

>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A

Probab=96.60  E-value=0.0096  Score=48.35  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=62.3

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|=+.+|.||-+.++|.|.++.+.-++...|+++.. .|.++|++. .+.||+.+..|. |.+... .+.+..|.=++
T Consensus        12 ~~~LY~r~g~~L~I~~dG~V~Gt~~~~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~-Lygs~~-~~~eC~F~E~~   89 (140)
T 1qql_A           12 VRRLFCRTQWYLRIDKRGKVKGTQEMRNSYNIMEIRTVAVGIVAIKGVESEYYLAMNKEGK-LYAKQT-PNEECLFLERL   89 (140)
T ss_dssp             EECCEETTTEEEEECTTCCEEEESCTTCSTTCEEEEEEETTEEEEEETTTCCCCEECTTSC-EECCSS-CCGGGEEEEEE
T ss_pred             EEEEEecCCeEEEECCCCeEEeecCCCCCceEEEEEeecCCEEEEEEcccCcEEEEcCCCC-EEeccc-CCCCCeEEEEE
Confidence            35666777999999999999999999899999999876 689999986 899999999987 776433 55666666554

>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A

Probab=96.56  E-value=0.021  Score=45.78  Aligned_cols=64  Identities=22%  Similarity=0.359  Sum_probs=55.0

Q ss_pred             EEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecc
Q psy2222         109 VAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSR  173 (264)
Q Consensus       109 ~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~  173 (264)
                      +-|+. .+|.||-++++|.|.++.+.-++...|++..- -|.++|+.. .|.||+++++|. |.++..
T Consensus         8 ~~~~~~~~g~~L~I~~dG~V~Gt~~~~~~~s~l~~~~v~~G~V~I~g~~sg~yL~m~~~G~-v~Gs~~   74 (132)
T 3q7x_A            8 VLLRSTETGQFLRINPDGTVDGTRDRSDPGIQFQISPEGNGEVLLRSTETGQFLRINPDGT-VDGTRD   74 (132)
T ss_dssp             EEEEETTTCCEEEECTTSBEEEECCTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSB-EEEECC
T ss_pred             heeeeccCcEEEEECCCCcEEeecCCCCCCcEEEEEecccCEEEEEEEcccEEEEECCCCC-EeeccC
Confidence            55665 58999999999999999998899999999876 599999986 899999999987 777543

>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A

Probab=96.56  E-value=0.019  Score=46.87  Aligned_cols=77  Identities=16%  Similarity=0.235  Sum_probs=62.5

Q ss_pred             eEEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         108 KVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       108 ~~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      ..+|=+.+ |.||-+..+|.|.++.+.-.+...|+++.. .|.++|+.. .+.||+++..|. |.+... .+.+..|.=+
T Consensus        20 ~~rLY~r~~g~~LqI~~dG~V~Gt~~~~~~~s~l~i~sv~~G~V~I~gv~s~~YLcMn~~G~-Lygs~~-~t~eC~F~E~   97 (146)
T 1bfg_A           20 PKRLYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGR-LLASKS-VTDECFFFER   97 (146)
T ss_dssp             CEEEEETTTTEEEEECTTSCEEEECCTTCGGGCEEEEECSTTEEEEEETTTTEEEEECTTSC-EEEESS-CCGGGCEEEE
T ss_pred             cEEEEEcCCCEEEEECCCCeEEeecCCCCCceEEEEEeccCCEEEEEEcccCcEEEEcCCCC-Eecccc-CCCCceEEEE
Confidence            45666665 899999999999999998888999999877 589999986 899999999997 877543 5666666655


Q ss_pred             Ec
Q psy2222         185 SN  186 (264)
Q Consensus       185 ~~  186 (264)
                      +.
T Consensus        98 ~~   99 (146)
T 1bfg_A           98 LE   99 (146)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1

Probab=96.56  E-value=0.037  Score=44.13  Aligned_cols=115  Identities=10%  Similarity=0.071  Sum_probs=78.7

Q ss_pred             EEEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          63 ISIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        63 ~~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      ..|.+.+  |-||.-+.+|...-..     + .++..+|.+..+.-+.|+|++ ..|+||+.|+.|.|.+... .++...
T Consensus         6 ~~LY~~~~~g~~LqI~~dG~V~Gt~-----~-~~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~Lygs~~-~~~eC~   78 (128)
T 1ijt_A            6 RRLYCNVGIGFHLQALPDGRIGGAH-----A-DTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKLYGSPF-FTDECT   78 (128)
T ss_dssp             EEEEECSTTCEEEEECTTSCEEEES-----S-CCGGGCEEEEEEETTEEEEEETTTTEEEEECTTCCEEEESS-CCTTSE
T ss_pred             EEEEEecCCCeEEEECCCCcEeccc-----C-CCccceEEEEeccCCEEEEEEcccCcEEEEcCCCCEEcccc-cCCCce
Confidence            4677777  6889998888654421     1 223678888888878999999 6899999999999999664 677777


Q ss_pred             eEEEEeC-CceEEecc-C-ceeEEEecCCCeeEEeccc-CCCcceEEEE
Q psy2222         140 WEPVFED-DNMALLGA-N-QCFMSVSEQDDSIVATSRK-AGKNEMVKLR  184 (264)
Q Consensus       140 f~iv~~~-g~~alq~~-n-g~fLs~~~~~~~l~a~s~~-~g~~e~~~iR  184 (264)
                      |.=.+.+ +=-+..+. + +.||+++..|....+.... -.....|-+|
T Consensus        79 F~E~~~en~Yn~Y~S~~~~~~yval~k~G~~r~g~~t~~~~~~~hFlpr  127 (128)
T 1ijt_A           79 FKEILLPNNYNAYESYKYPGMFIALGKNGKTKKGNRVSPTMKVTHFLPR  127 (128)
T ss_dssp             EEEEECGGGCEEEEESSSTTCBCCBCTTSSBCCGGGCCTTSGGGCEEEE
T ss_pred             EEEEEccCCcEEEEECCCCCEEEEECCCCCCccCCccCCCCceeeeEec
Confidence            7554543 33344443 4 8899999888633343222 2344556554

>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A*

Probab=96.54  E-value=0.019  Score=48.33  Aligned_cols=76  Identities=13%  Similarity=0.155  Sum_probs=62.1

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .++|=+.+|.||-+..+|.|.++.+.-++...|+++.. .|.++|+.. .+.||+++..|. |.+ +...+.+..|.=++
T Consensus        29 ~~qLY~r~g~~LqI~~dG~V~Gt~~~~s~~silei~sv~~g~V~I~gv~s~~YLcMn~~G~-Lyg-s~~~t~eC~F~E~~  106 (174)
T 1ihk_A           29 RRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLGMNEKGE-LYG-SEKLTQECVFREQF  106 (174)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEESSTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTCC-EEE-ESSCCGGGCEEEEE
T ss_pred             EEEEEecCCcEEEECCCCcEEeecCCCCCcceEEEEeccCceEEEEEcccCcEEEEcCCCC-Eec-cccCCCCceeEEEE
Confidence            56787878999999999999999988889999999876 689999986 899999999997 777 34455555555443

>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A

Probab=96.35  E-value=0.031  Score=42.37  Aligned_cols=71  Identities=15%  Similarity=0.236  Sum_probs=51.9

Q ss_pred             EEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceE
Q psy2222         109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV  181 (264)
Q Consensus       109 ~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~  181 (264)
                      -+||+++|-||+++.+ .|-.--.--....-|-++...++++|++.-|+|+++....+ +.-.----|+-..|
T Consensus         4 rafk~hhgh~lsae~~-~vkthhghhdhhthfhvenhg~kvalrth~gkyvsigdhkq-vylshh~hg~hslf   74 (118)
T 1hcd_A            4 RAFKSHHGHFLSAEGE-AVKTHHGHHDHHTHFHVENHGGKVALKTHCGKYLSIGDHKQ-VYLSHHLHGDHSLF   74 (118)
T ss_dssp             SEEESSTTCEEEEETT-EEEEECSCSSCCCCCEEEEETTEEEEESSSSCEEEEEETTE-EEEECCCSSSSSSB
T ss_pred             chhhhccCeeeecccc-ccccccCcccccceEEeecCCceEEEEeccCcEEEecCCce-EEEEeeecCcceeE
Confidence            3799999999999877 44444444556778999888999999999999999977654 54433333444444

>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A

Probab=96.31  E-value=0.074  Score=43.26  Aligned_cols=65  Identities=22%  Similarity=0.331  Sum_probs=56.2

Q ss_pred             eEEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecc
Q psy2222         108 KVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSR  173 (264)
Q Consensus       108 ~~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~  173 (264)
                      ..+|=+.+ |.||-+.++|.|.++.+.-++...|++... -|.++|+.. .|.||+++.+|. |.+...
T Consensus        42 ~r~LYcr~~g~hLqI~~dG~V~Gt~~~~s~~s~Lei~sv~~GvV~I~Gv~tg~yL~Mn~dG~-l~Gs~~  109 (142)
T 3p6i_A           42 EVLLKSTETGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGT-VDGTRD  109 (142)
T ss_dssp             CEEEEETTTCCEEEECTTSBEEEECCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSB-EEEECC
T ss_pred             eEEEEEcCCCEEEEECCCCcCcCcCCCCCCceEEEEEeccCCEEEEEEecCceEEeECCCCC-CccccC
Confidence            56777766 999999999999999998899999999876 589999985 789999999997 777544

>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens}

Probab=96.27  E-value=0.054  Score=46.84  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=81.9

Q ss_pred             EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEE
Q psy2222          64 SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus        64 ~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~i  142 (264)
                      .|.+..+-||.-+.+|...-.     .+..++.-+|.+..+.-+.|+||+ ..|+||+.|+.|.|.+ +...++...|.=
T Consensus        68 qLYcrtg~hLqI~~dG~V~GT-----~~~~s~yslLei~sv~~G~V~IkGv~S~~YLcMn~~G~LYg-s~~~s~eC~F~E  141 (211)
T 3f1r_A           68 QLYCRTGFHLQILPDGSVQGT-----RQDHSLFGILEFISVAVGLVSIRGVDSGLYLGMNDKGELYG-SEKLTSECIFRE  141 (211)
T ss_dssp             EEEETTTEEEEECTTSCEEEE-----SCTTCSSSEEEEEEEETTEEEEEETTTCCEEEECTTSCEEE-ESSCCGGGCEEE
T ss_pred             EEEEcCCeEEEECCCCcEEec-----cCCCCCcceeeEEeccCCEEEEEEeecceEEEECCCCCCcc-cCCCCCCeeEEE
Confidence            577777778888888865441     233456678888888878999999 6899999999999998 667778888864


Q ss_pred             EEe-CCceEEecc--------CceeEEEecCCCeeEEec-ccCCCcceEEEEEc
Q psy2222         143 VFE-DDNMALLGA--------NQCFMSVSEQDDSIVATS-RKAGKNEMVKLRSN  186 (264)
Q Consensus       143 v~~-~g~~alq~~--------ng~fLs~~~~~~~l~a~s-~~~g~~e~~~iR~~  186 (264)
                      .+. ++=-+..+.        .+.||+++..|....+.. ..-.....|-+|..
T Consensus       142 ~i~EN~YntY~S~~y~~~~~gr~wYVaLnk~GrprrG~ktk~~q~~tHFLPr~v  195 (211)
T 3f1r_A          142 QFEENWYNTYSSNIYKHGDTGRRYFVALNKDGTPRDGARSKRHQKFTHFLPRPV  195 (211)
T ss_dssp             EEEETTEEEEEEEEEECTTTCCEEECCBCTTSSBCCGGGCCTTSGGGCEEEECC
T ss_pred             EEccCCceEEEeccccCCCCCceEEEEECCCCCCcccCCCCCCCeeeeEECCCC
Confidence            444 432233332        258999998886334432 22345677888754

>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens}

Probab=96.27  E-value=0.11  Score=42.78  Aligned_cols=119  Identities=11%  Similarity=0.090  Sum_probs=80.7

Q ss_pred             CEEEEeC---CCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCC-
Q psy2222          62 AISIEFG---KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGP-  136 (264)
Q Consensus        62 p~~i~~~---s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~-  136 (264)
                      .+.|.+.   ++-||.-+.+|...-.     .+ .++.-+|.+..+.-+.|+||+ ..|+||+.|+.|.|.+. ...++ 
T Consensus        15 ~~~LY~~~~rtg~~LqI~~dG~V~Gt-----~d-~~~~s~Lei~sv~~g~V~Ikgv~s~~YLcMn~~G~Lygs-~~~t~e   87 (155)
T 2p39_A           15 LIHLYTATARNSYHLQIHKNGHVDGA-----PH-QTIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGNIFGS-HYFDPE   87 (155)
T ss_dssp             CEEEECTTSSSCCEEEECTTSCEEEE-----SS-CCTTTCEEEEECGGGEEEEEETTTTEEEEECTTSCEEEE-SSCCTT
T ss_pred             EEEEEEccCCCceEEEECCCCcEeCc-----cC-CCCcEEEEEEeecCCEEEEEEeccCcEEEECCCCCEeec-CccCcC
Confidence            5678884   5889999999965442     12 255677777877777999999 68999999999999995 44554 


Q ss_pred             CCceEEEEeCCce-EEecc-CceeEEEecCCCeeEEecccCCCcceEEEEEccc
Q psy2222         137 LEQWEPVFEDDNM-ALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSL  188 (264)
Q Consensus       137 ~E~f~iv~~~g~~-alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~  188 (264)
                      ...|.=.+.++.| +..+. ++.||+....+. ..-......+...|-+|.+..
T Consensus        88 dC~F~E~~~eN~YntY~S~~y~~yval~r~gr-~~~~g~~~~~~shFLpr~~~v  140 (155)
T 2p39_A           88 NCRFQHQTLENGYDVYHSPQYHFLVSLGRAKR-AFLPGMNPPPYSQFLSRRNEI  140 (155)
T ss_dssp             TSCEEEEECTTSCEEEECTTTCBBCCSSSCCC-BCCTTSCCCGGGCBEEEECCS
T ss_pred             CcEEEEEEccCCcEEEEECccCeEEEeCCCCc-cccCCCCCCcceeeeccCCcc
Confidence            5777555554444 45553 688999865553 211122234556888886544

>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C

Probab=96.26  E-value=0.064  Score=45.79  Aligned_cols=117  Identities=11%  Similarity=0.129  Sum_probs=83.5

Q ss_pred             EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEE
Q psy2222          64 SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus        64 ~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~i  142 (264)
                      .|.+.+|-||.-+.+|...-.     .+..++..+|.+..+.-+.|+|++ ..|+||+.|..|.|.+. ...++...|.=
T Consensus        20 qLYcr~G~hLqI~~dG~V~GT-----~~~~s~~slLei~sv~~GvV~IkGv~S~~YLcMn~~G~Lygs-~~~s~eC~F~E   93 (193)
T 3hbw_A           20 KLYSRQGYHLQLQADGTIDGT-----KDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGYLYTS-ELFTPECKFKE   93 (193)
T ss_dssp             EEEETTSCEEEECTTSCEEEE-----SCTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSCEEEE-SSBCGGGEEEE
T ss_pred             EEEEcCCeEEEEcCCCcEEcc-----cCCCCCceEEEEEeccCCEEEEEEeeceeEEEEcCCCCCccc-cCCCCCEEEEE
Confidence            678888899999999965542     233456678888888778999999 68999999999999984 55667777765


Q ss_pred             EEeCCce-EEecc--------CceeEEEecCCCeeEEecc-cCCCcceEEEEEc
Q psy2222         143 VFEDDNM-ALLGA--------NQCFMSVSEQDDSIVATSR-KAGKNEMVKLRSN  186 (264)
Q Consensus       143 v~~~g~~-alq~~--------ng~fLs~~~~~~~l~a~s~-~~g~~e~~~iR~~  186 (264)
                      .+.++.| ++.+.        .+.||+++..|....+... .-.....|-+|..
T Consensus        94 ~i~EN~YntY~S~~y~~~~~gr~wYvaLnk~GrprrG~rtk~~q~~~hFLPr~v  147 (193)
T 3hbw_A           94 SVFENYYVTYSSMIYRQQQSGRGWYLGLNKEGEIMKGNHVKKNKPAAHFLPKPL  147 (193)
T ss_dssp             EEETTTEEEEEEEEEECTTTCCEEECCBCTTSBBCCGGGCCTTSGGGCEEEEEE
T ss_pred             EEccCCceEEEEecccCccCCccEEEEECCCCccccCCCcCCCceeeeeEcccc
Confidence            5544333 33332        3789999998863344332 2346688888854

>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1

Probab=96.22  E-value=0.039  Score=43.99  Aligned_cols=74  Identities=12%  Similarity=0.087  Sum_probs=58.3

Q ss_pred             EEEEecC--CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         109 VAFKSGF--DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       109 ~~lKs~~--GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      .+|=+.+  |.||-+..+|.|.++.+. ++...|+++.. .|.++|++. .+.||+.+..|. |.+.. ..+++..|.=+
T Consensus         6 ~~LY~~~~~g~~LqI~~dG~V~Gt~~~-~~~s~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~-Lygs~-~~~~eC~F~E~   82 (128)
T 1ijt_A            6 RRLYCNVGIGFHLQALPDGRIGGAHAD-TRDSLLELSPVERGVVSIFGVASRFFVAMSSKGK-LYGSP-FFTDECTFKEI   82 (128)
T ss_dssp             EEEEECSTTCEEEEECTTSCEEEESSC-CGGGCEEEEEEETTEEEEEETTTTEEEEECTTCC-EEEES-SCCTTSEEEEE
T ss_pred             EEEEEecCCCeEEEECCCCcEecccCC-CccceEEEEeccCCEEEEEEcccCcEEEEcCCCC-EEccc-ccCCCceEEEE
Confidence            4555655  899999999999999875 45888888876 589999986 899999999997 77754 34566666655


Q ss_pred             E
Q psy2222         185 S  185 (264)
Q Consensus       185 ~  185 (264)
                      +
T Consensus        83 ~   83 (128)
T 1ijt_A           83 L   83 (128)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens}

Probab=96.13  E-value=0.052  Score=46.94  Aligned_cols=76  Identities=12%  Similarity=0.145  Sum_probs=62.9

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|=+.+|.||-+..+|.|.++.+.-++...|++... .|.++|+.. .+.||+.+..|. |.+ +...+.+..|+=++
T Consensus        66 ~rqLYcrtg~hLqI~~dG~V~GT~~~~s~yslLei~sv~~G~V~IkGv~S~~YLcMn~~G~-LYg-s~~~s~eC~F~E~i  143 (211)
T 3f1r_A           66 RRQLYCRTGFHLQILPDGSVQGTRQDHSLFGILEFISVAVGLVSIRGVDSGLYLGMNDKGE-LYG-SEKLTSECIFREQF  143 (211)
T ss_dssp             EEEEEETTTEEEEECTTSCEEEESCTTCSSSEEEEEEEETTEEEEEETTTCCEEEECTTSC-EEE-ESSCCGGGCEEEEE
T ss_pred             EEEEEEcCCeEEEECCCCcEEeccCCCCCcceeeEEeccCCEEEEEEeecceEEEECCCCC-Ccc-cCCCCCCeeEEEEE
Confidence            46777778999999999999999998889999999876 589999986 899999999997 777 44555566666554

>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1

Probab=96.09  E-value=0.056  Score=44.98  Aligned_cols=78  Identities=14%  Similarity=0.203  Sum_probs=63.0

Q ss_pred             eEEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe--CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEE
Q psy2222         108 KVAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE--DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKL  183 (264)
Q Consensus       108 ~~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~--~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~i  183 (264)
                      ..+|=+.+ |.||-+..+|.|.++.+.-.+...|++...  ++.++|+.. .+.||+++..|. |.+.....+.+..|.=
T Consensus        31 ~~qLY~rt~g~~LqI~~dG~V~Gt~~~~~~~s~L~~~s~~~g~~V~I~gv~s~~YLcMn~~G~-Lygs~~~~~~eC~F~E  109 (164)
T 2fdb_M           31 TYQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGK-LIAKSNGKGKDCVFTE  109 (164)
T ss_dssp             EEEEEETTTSSEEEECTTSCEEEEECTTCGGGCEEEEEEETTTEEEEEETTTCCEEEECTTSC-EEEESCCCSGGGEEEE
T ss_pred             EEEEEEccCCeEEEECCCCcEEeeccCCCcceEEEEEEeccceEEEEEEeccCcEEEEcCCCC-EeecCcCCCCCCEEEE
Confidence            46677765 999999999999999998788887777654  348999986 899999999998 8887665677777766


Q ss_pred             EEc
Q psy2222         184 RSN  186 (264)
Q Consensus       184 R~~  186 (264)
                      ++.
T Consensus       110 ~~~  112 (164)
T 2fdb_M          110 IVL  112 (164)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            654

>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens}

Probab=95.93  E-value=0.065  Score=43.44  Aligned_cols=59  Identities=19%  Similarity=0.296  Sum_probs=50.6

Q ss_pred             cCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecc
Q psy2222         114 GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSR  173 (264)
Q Consensus       114 ~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~  173 (264)
                      ..|.||-+.++|.|.++.+.-.+.-.|++... .|.++|+.. +|.||+++++|. |.++..
T Consensus        17 ~~g~~LqI~~dG~V~Gt~~~~~~~s~l~~~sv~~G~V~I~gv~sg~yL~m~~~G~-v~Gs~~   77 (143)
T 3snv_A           17 KGGQYLRINPDGTVDGTRDRSDTHIQFQISPEGNGEVLLKSTETGQYLRINPDGT-VDGTRD   77 (143)
T ss_dssp             --CCEEEECTTSBEEEESCTTCTTSEEEEEEEETTEEEEEETTTTEEEEECTTSB-EEEECC
T ss_pred             cCCEEEEECCCCCEeeecCCCCCceEEEEEeccCCeEEEEEEcccEEEeECCCCC-Eeeccc
Confidence            47899999999999999988899999999877 589999985 899999999997 877644

>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C

Probab=95.90  E-value=0.056  Score=46.16  Aligned_cols=74  Identities=11%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             EEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         110 AFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       110 ~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      +|=+.+|.||-++.+|.|.++.+.-.+...|++..- .|.++|+.. .+.||+.+..|. |.+. ...+.+..|.=++
T Consensus        20 qLYcr~G~hLqI~~dG~V~GT~~~~s~~slLei~sv~~GvV~IkGv~S~~YLcMn~~G~-Lygs-~~~s~eC~F~E~i   95 (193)
T 3hbw_A           20 KLYSRQGYHLQLQADGTIDGTKDEDSTYTLFNLIPVGLRVVAIQGVQTKLYLAMNSEGY-LYTS-ELFTPECKFKESV   95 (193)
T ss_dssp             EEEETTSCEEEECTTSCEEEESCTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTSC-EEEE-SSBCGGGEEEEEE
T ss_pred             EEEEcCCeEEEEcCCCcEEcccCCCCCceEEEEEeccCCEEEEEEeeceeEEEEcCCCC-Cccc-cCCCCCEEEEEEE
Confidence            566667999999999999999988889999999876 588999986 899999999997 7763 3344556665553

>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens}

Probab=95.77  E-value=0.08  Score=43.65  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=58.7

Q ss_pred             eEEEEe---cCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCC-CcceE
Q psy2222         108 KVAFKS---GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAG-KNEMV  181 (264)
Q Consensus       108 ~~~lKs---~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g-~~e~~  181 (264)
                      ..+|-+   -+|.||-+..+|.|.++.+. ++...|++... .|.++|+.. .|.||+.+..|. |.+.. ..+ ++..|
T Consensus        15 ~~~LY~~~~rtg~~LqI~~dG~V~Gt~d~-~~~s~Lei~sv~~g~V~Ikgv~s~~YLcMn~~G~-Lygs~-~~t~edC~F   91 (155)
T 2p39_A           15 LIHLYTATARNSYHLQIHKNGHVDGAPHQ-TIYSALMIRSEDAGFVVITGVMSRRYLCMDFRGN-IFGSH-YFDPENCRF   91 (155)
T ss_dssp             CEEEECTTSSSCCEEEECTTSCEEEESSC-CTTTCEEEEECGGGEEEEEETTTTEEEEECTTSC-EEEES-SCCTTTSCE
T ss_pred             EEEEEEccCCCceEEEECCCCcEeCccCC-CCcEEEEEEeecCCEEEEEEeccCcEEEECCCCC-EeecC-ccCcCCcEE
Confidence            355555   37999999999999999985 88899988876 589999986 899999999997 87743 333 35555


Q ss_pred             EEEE
Q psy2222         182 KLRS  185 (264)
Q Consensus       182 ~iR~  185 (264)
                      .=++
T Consensus        92 ~E~~   95 (155)
T 2p39_A           92 QHQT   95 (155)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1

Probab=95.71  E-value=0.074  Score=44.16  Aligned_cols=118  Identities=14%  Similarity=0.078  Sum_probs=75.5

Q ss_pred             EEEEeCCCc-----EEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCC
Q psy2222          63 ISIEFGKRT-----FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGP  136 (264)
Q Consensus        63 ~~i~~~s~~-----yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~  136 (264)
                      ..|.+.++-     ||.-..+|...-. . .    .++.-+|.+..+.-+.|+||+ ..|+||+.|+.|.|.+... .++
T Consensus        11 ~~LY~~~~~g~~~~~LqI~~dG~V~Gt-~-d----~~~~siLei~sv~~g~V~I~gv~s~~YLcMn~~G~Lygs~~-~t~   83 (162)
T 1pwa_A           11 RHLYTSGPHGLSSCFLRIRADGVVDCA-R-G----QSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGKMQGLLQ-YSE   83 (162)
T ss_dssp             EEEEECCTTSCCCEEEEECTTSBEEEE-S-S----CCGGGCEEEEEEETTEEEEEETTTCCEEEECGGGCEEEESS-CCH
T ss_pred             EEEEEccCCCCceeEEEECCCCcEeCC-c-C----CCCccEEEEEeecCCEEEEEEcccCcEEEEcCCCCEeecCc-CCC
Confidence            467777764     8999888865542 1 1    356678888888888999999 6999999999999999654 443


Q ss_pred             -CCceEEEEeCCce-EEecc-CceeEEEecCCCeeEE-ecccCCCcceEEEEEccc
Q psy2222         137 -LEQWEPVFEDDNM-ALLGA-NQCFMSVSEQDDSIVA-TSRKAGKNEMVKLRSNSL  188 (264)
Q Consensus       137 -~E~f~iv~~~g~~-alq~~-ng~fLs~~~~~~~l~a-~s~~~g~~e~~~iR~~a~  188 (264)
                       ...|.=.+.++.| ++.+. ++.||.++..+. ... ..........|-+|....
T Consensus        84 ~eC~F~E~~~eN~YntY~S~~y~~yvaL~k~G~-~r~~k~k~~~~~~hFLpr~~~~  138 (162)
T 1pwa_A           84 EDCAFEEEIRPDGYNVYRSEKHRLPVSLSSAKQ-RQLYKNRGFLPLSHFLPMLPMV  138 (162)
T ss_dssp             HHHEEEEEECTTSCEEEEETTTTEECCCC--------------CTTCCBEEECCSS
T ss_pred             CcceEEeeeccCCceEEEECcCCeEEEEcCCCC-cCCCCCCcCCcceeEEecCCCC
Confidence             4555444444444 45543 789999988775 322 223334567888886433

>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}

Probab=95.28  E-value=0.88  Score=36.34  Aligned_cols=90  Identities=19%  Similarity=0.247  Sum_probs=62.5

Q ss_pred             ccccEEEEEecCCeEEEEe-cCCeEEEEec----CCc-EEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCC-
Q psy2222          95 PEEIFTAILVNDSKVAFKS-GFDKYLSIDK----NGR-VTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQD-  165 (264)
Q Consensus        95 ~~evf~~~~v~dt~~~lKs-~~GkYLs~d~----~G~-v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~-  165 (264)
                      ..|.|.+....++.|.|++ +.|++|.+..    +|. |.--.-.-++..+|.+... +|.|.|++. .|+.|.+.+.. 
T Consensus        62 ~~Q~W~~~~~~~g~y~i~~~~sg~cLdv~~~~~~~G~~v~~~~c~~~~~Q~W~~~~~g~g~~~i~~~~sg~cLdv~~~~~  141 (165)
T 3pg0_A           62 DNQQWRLVDLGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENAST  141 (165)
T ss_dssp             GGGCEEEEEEETTEEEEEETTTCCEEEEGGGCCSTTCBEEEECCCCCGGGCEEEEECSSSCEEEEETTTCCEEEEGGGCC
T ss_pred             ccceEEEEECCCCEEEEEECCCCCEEEeCCCCCCCCCEEEEEcCCCCCccEEEEEECCCCEEEEEECCCCcEEEcCCCCC
Confidence            5799999999888999998 5689998853    333 4433444557889999987 589999985 78899886432 


Q ss_pred             ---CeeEEecccCCCcceEEEE
Q psy2222         166 ---DSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       166 ---~~l~a~s~~~g~~e~~~iR  184 (264)
                         ..|.--.-.-+.+..|++-
T Consensus       142 ~~G~~v~~~~c~g~~nQ~W~~~  163 (165)
T 3pg0_A          142 SDGANVIQYSYSGGDNQQWRLV  163 (165)
T ss_dssp             STTCBEEEECCCCCGGGCEEEE
T ss_pred             CCCCEEEEeCCCCCccceEEEE
Confidence               2243322233566777663

>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1

Probab=94.52  E-value=0.18  Score=42.96  Aligned_cols=116  Identities=14%  Similarity=0.075  Sum_probs=79.2

Q ss_pred             EEEEeCCCc-----EEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCC
Q psy2222          63 ISIEFGKRT-----FVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGP  136 (264)
Q Consensus        63 ~~i~~~s~~-----yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~  136 (264)
                      ..|.+.++-     ||.-..+|...-. . .    .++.-+|.+..+.-+.|+||+ ..|+|||.|+.|.|.+.. ..++
T Consensus        23 ~qLY~rtg~g~~~~~LqI~~dG~V~Gt-~-d----~s~~siLei~sv~~G~V~IkGv~S~~YLcMn~~G~LYgs~-~~t~   95 (194)
T 2p23_A           23 RHLYTSGPHGLSSCFLRIRADGVVDCA-R-G----QSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGKMQGLL-QYSE   95 (194)
T ss_dssp             EEEEEECTTSCCEEEEEECTTSBEEEE-S-S----CCTTTCEEEEEEETTEEEEEETTTCCEEEECGGGCEEEES-SCCH
T ss_pred             EEEEEccCCCCcceEEEECCCCcEeCc-c-C----CCcccEEEEEeccCCEEEEEEcccCcEEEECCCCCEeecC-cCCc
Confidence            457777664     8888888865542 1 1    245667888888778999999 689999999999999954 4553


Q ss_pred             -CCceEEEEeCCce-EEecc-CceeEEEecCCCeeEE-ecccCCCcceEEEEEc
Q psy2222         137 -LEQWEPVFEDDNM-ALLGA-NQCFMSVSEQDDSIVA-TSRKAGKNEMVKLRSN  186 (264)
Q Consensus       137 -~E~f~iv~~~g~~-alq~~-ng~fLs~~~~~~~l~a-~s~~~g~~e~~~iR~~  186 (264)
                       ...|.=.+.++.| +..+. ++.||.++..+. ... ..........|-+|..
T Consensus        96 ~eC~F~E~i~EN~YntY~S~~y~~yvaLnk~G~-~r~~k~k~~~~~~hFLPr~~  148 (194)
T 2p23_A           96 EDCAFEEEIRPDGYNVYRSEKHRLPVSLSSAKQ-RQLYKNRGFLPLSHFLPMLP  148 (194)
T ss_dssp             HHHEEEEEECTTSCEEEEETTTTEECCCCCTTG-GGHHHHTSCCTTCCBEEECC
T ss_pred             CCcEEEEEeccCCcEEEEECCCCEEEEEeCCCC-CCCCCCCCCCcceeEEecCC
Confidence             5556444454443 44443 789999988875 222 1233345688888865

>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1

Probab=94.34  E-value=0.27  Score=41.93  Aligned_cols=74  Identities=9%  Similarity=0.059  Sum_probs=55.7

Q ss_pred             EEEEecCC-----eEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCC-Ccce
Q psy2222         109 VAFKSGFD-----KYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAG-KNEM  180 (264)
Q Consensus       109 ~~lKs~~G-----kYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g-~~e~  180 (264)
                      .+|=+.+|     .||-+..+|.|.++.+. .+...|++... -|.++|+.. .|.||+.+..|. |.+.. ..+ .+..
T Consensus        23 ~qLY~rtg~g~~~~~LqI~~dG~V~Gt~d~-s~~siLei~sv~~G~V~IkGv~S~~YLcMn~~G~-LYgs~-~~t~~eC~   99 (194)
T 2p23_A           23 RHLYTSGPHGLSSCFLRIRADGVVDCARGQ-SAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGK-MQGLL-QYSEEDCA   99 (194)
T ss_dssp             EEEEEECTTSCCEEEEEECTTSBEEEESSC-CTTTCEEEEEEETTEEEEEETTTCCEEEECGGGC-EEEES-SCCHHHHE
T ss_pred             EEEEEccCCCCcceEEEECCCCcEeCccCC-CcccEEEEEeccCCEEEEEEcccCcEEEECCCCC-EeecC-cCCcCCcE
Confidence            44545444     59999999999999764 88889988876 599999986 899999999997 77742 334 3455


Q ss_pred             EEEEE
Q psy2222         181 VKLRS  185 (264)
Q Consensus       181 ~~iR~  185 (264)
                      |.=++
T Consensus       100 F~E~i  104 (194)
T 2p23_A          100 FEEEI  104 (194)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            54443

>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1

Probab=94.21  E-value=0.21  Score=41.43  Aligned_cols=74  Identities=9%  Similarity=0.053  Sum_probs=55.9

Q ss_pred             EEEEecCC-----eEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCC-Ccce
Q psy2222         109 VAFKSGFD-----KYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAG-KNEM  180 (264)
Q Consensus       109 ~~lKs~~G-----kYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g-~~e~  180 (264)
                      .+|=+.+|     .||-+..+|.|.++.+ ..+...|++... -|.++|+.. .|.||+.+..|. |.+... .+ ....
T Consensus        11 ~~LY~~~~~g~~~~~LqI~~dG~V~Gt~d-~~~~siLei~sv~~g~V~I~gv~s~~YLcMn~~G~-Lygs~~-~t~~eC~   87 (162)
T 1pwa_A           11 RHLYTSGPHGLSSCFLRIRADGVVDCARG-QSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGK-MQGLLQ-YSEEDCA   87 (162)
T ss_dssp             EEEEECCTTSCCCEEEEECTTSBEEEESS-CCGGGCEEEEEEETTEEEEEETTTCCEEEECGGGC-EEEESS-CCHHHHE
T ss_pred             EEEEEccCCCCceeEEEECCCCcEeCCcC-CCCccEEEEEeecCCEEEEEEcccCcEEEEcCCCC-EeecCc-CCCCcce
Confidence            55666555     4999999999999965 578888888866 599999986 899999999997 777432 33 3445


Q ss_pred             EEEEE
Q psy2222         181 VKLRS  185 (264)
Q Consensus       181 ~~iR~  185 (264)
                      |.=++
T Consensus        88 F~E~~   92 (162)
T 1pwa_A           88 FEEEI   92 (162)
T ss_dssp             EEEEE
T ss_pred             EEeee
Confidence            54443

>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A

Probab=93.74  E-value=0.33  Score=41.73  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             CeeeccccCCCCCCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCC
Q psy2222          49 GWTQVKHIKDIVGAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNG  125 (264)
Q Consensus        49 ~W~~~~~~~dI~Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G  125 (264)
                      .|.....+.+  |.+.|+-.. ++||++..+|....     .++.-+..|.|.+++...+.|+||+ +.|+-|.....+
T Consensus        98 ~W~i~~~~p~--G~VqFvN~~TgtCL~ay~nGvv~~-----~C~~s~~~Q~wsiiPttnGAVQIKnvatg~CL~t~~~s  169 (206)
T 1sr4_A           98 NWKMEPGKHR--EYFRFVNQSLGTCVEAYGNGLIHD-----ICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVS  169 (206)
T ss_dssp             CEEEEECSST--TCEEEEETTTCCEEEEETTEEEEE-----CCCTTCGGGCEEEEEBTTSCEEEEETTTCCEEEECSSC
T ss_pred             eeEEEeecCC--CEEEEEECCCCceeeeccCCeEEe-----cCCCCCcccEEEEecCCCccEEEEECCCCccCCccCCC
Confidence            4655433333  667777766 99999998885222     2444445899999998877999999 688888875543

>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A

Probab=89.67  E-value=2.9  Score=35.82  Aligned_cols=71  Identities=6%  Similarity=0.003  Sum_probs=52.9

Q ss_pred             CCccccEEEEE-ecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEec
Q psy2222          93 PSPEEIFTAIL-VNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSE  163 (264)
Q Consensus        93 ~~~~evf~~~~-v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~  163 (264)
                      .+..++|.+++ .+++.|+|+. ..|..|.+..+|.+....+.-...-.|.+.+. .|.+.||+. +|.=|++..
T Consensus        93 FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~nGvv~~~C~~s~~~Q~wsiiPttnGAVQIKnvatg~CL~t~~  167 (206)
T 1sr4_A           93 FGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNGLIHDICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNP  167 (206)
T ss_dssp             GGGGGCEEEEECSSTTCEEEEETTTCCEEEEETTEEEEECCCTTCGGGCEEEEEBTTSCEEEEETTTCCEEEECS
T ss_pred             cCCcceeEEEeecCCCEEEEEECCCCceeeeccCCeEEecCCCCCcccEEEEecCCCccEEEEECCCCccCCccC
Confidence            34567899984 6777999999 57999999988876655555334678999988 588999986 455566533

>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A

Probab=89.66  E-value=4.3  Score=36.14  Aligned_cols=89  Identities=12%  Similarity=0.206  Sum_probs=66.9

Q ss_pred             ccccEEEEEecC-CeEEEEecC--CeEEEEecC-CcEEEeccCCCCCCceEEEEe--CCceEEecc--CceeEEEecCCC
Q psy2222          95 PEEIFTAILVND-SKVAFKSGF--DKYLSIDKN-GRVTGRSDAVGPLEQWEPVFE--DDNMALLGA--NQCFMSVSEQDD  166 (264)
Q Consensus        95 ~~evf~~~~v~d-t~~~lKs~~--GkYLs~d~~-G~v~a~a~a~g~~E~f~iv~~--~g~~alq~~--ng~fLs~~~~~~  166 (264)
                      ..|.|.++..++ +.+.|++.+  +.+|+.+.. +.|......-+....|.|+..  +|.|.|++.  .++.|.+.....
T Consensus        44 ~~Q~W~~~yd~~~g~Y~I~n~~~~~lvL~~~~~~~~V~~~~~~g~~~Q~W~l~~~~~dG~y~i~n~~~s~~vLdv~~gs~  123 (286)
T 3aj6_A           44 ANQKWRLIYDTNKQAYKIKVMDNTSLILTWNAPLSSVSVKTDTNGDNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDT  123 (286)
T ss_dssp             GGGCEEEEEETTTTEEEEEESSSSCCEEEECTTSSCEEEECCCCCGGGCEEEEECTTTCCEEEEESSCTTEEEEECTTSC
T ss_pred             cCCeEEEEEcCCCCeEEEEECCCCcEEEEccCCCCCEEEeCCCCCcceEEEEEEeCCCCEEEEEECCCCceEEEecCCCe
Confidence            468999998875 489999954  567888764 467777777777788999986  799999994  478999986553


Q ss_pred             eeEEecccCCCcceEEEE
Q psy2222         167 SIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       167 ~l~a~s~~~g~~e~~~iR  184 (264)
                       |..-...-+.+..|+|-
T Consensus       124 -v~~~~~~g~~~Q~w~i~  140 (286)
T 3aj6_A          124 -LMVSTQTSSSNQFFKFS  140 (286)
T ss_dssp             -EEEEECCSCGGGCEEEE
T ss_pred             -EEEEecCCCCceeEEEe
Confidence             66666666677777764

>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A*

Probab=88.11  E-value=18  Score=34.38  Aligned_cols=96  Identities=16%  Similarity=0.104  Sum_probs=66.5

Q ss_pred             CccccEEEEEecCCeEEEEe-cCCeEEEEec----CCc-EEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecC-
Q psy2222          94 SPEEIFTAILVNDSKVAFKS-GFDKYLSIDK----NGR-VTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQ-  164 (264)
Q Consensus        94 ~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~----~G~-v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~-  164 (264)
                      ...|.|.+....++.+.|++ +.|++|.+..    +|. |+--.-.-++..+|.++.. +|.|.|++. +|+.|.+.+. 
T Consensus       395 ~~~Q~W~~~~~g~g~y~i~n~~sg~cLdv~~~~~~~G~~v~~~~c~g~~nQ~W~~~~~g~g~y~i~~~~sg~cLdv~~~s  474 (526)
T 3vsf_A          395 SLSQQWYLVDVGGGYKKIVNVKSGRALDVKDESKEDGGVLIQYTSNGGYNQHWKFTDIGDGYYKISSRHCGKLIDVRKWS  474 (526)
T ss_dssp             CGGGCEEEEECSTTEEEEEESSSCCEEEEGGGCCSTTEEEEEECCCCCGGGCEEEEEEETTEEEEEESSSCCEEEEGGGC
T ss_pred             CcceEEEEEECCCCEEEEEECCCCCEEEeCCCCCCCCCEEEEecCCCCcccEEEEEECCCCeEEEEECCCCCEEEeCCCC
Confidence            45799999999888999998 5799999753    343 3333334558889999987 689999985 7899998543 


Q ss_pred             ---CCeeEEecccCCCcceEEEEEcccc
Q psy2222         165 ---DDSIVATSRKAGKNEMVKLRSNSLH  189 (264)
Q Consensus       165 ---~~~l~a~s~~~g~~e~~~iR~~a~~  189 (264)
                         +..|.--.-.-+.+.+|++.-....
T Consensus       475 ~~~G~~v~~~~c~g~~nQ~W~~~~v~~~  502 (526)
T 3vsf_A          475 TEDGGIIQQWSDAGGTNQHWKLVLVSSP  502 (526)
T ss_dssp             CSTTEEEEEECCCCCGGGCEEEEEC---
T ss_pred             CCCCCEEEEEcCCCCccCeEEEEecCCC
Confidence               2224333333477889998765443

>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A*

Probab=86.20  E-value=18  Score=32.33  Aligned_cols=93  Identities=10%  Similarity=0.163  Sum_probs=63.9

Q ss_pred             CccccEEEEEe--cCCeEEEEe-cCCeEEEEe----cCCcEEEecc----CCCCCCceEEEEe-C-CceEEecc-CceeE
Q psy2222          94 SPEEIFTAILV--NDSKVAFKS-GFDKYLSID----KNGRVTGRSD----AVGPLEQWEPVFE-D-DNMALLGA-NQCFM  159 (264)
Q Consensus        94 ~~~evf~~~~v--~dt~~~lKs-~~GkYLs~d----~~G~v~a~a~----a~g~~E~f~iv~~-~-g~~alq~~-ng~fL  159 (264)
                      .+-|.|++.++  .++.+.|++ +.|++|-+.    .+|.-+---+    .-+...+|.++.. + |.|.|.+. .|+.|
T Consensus        43 ~~nQqW~~~~~~G~~G~Y~I~n~~SGkcLDV~~~stanGt~V~qw~~~~~~~g~nQqW~l~~~~g~G~y~I~n~~SGk~L  122 (293)
T 3ef2_A           43 NWHQLWLAEPIPNVADTFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFV  122 (293)
T ss_dssp             CTTCEEEEEECTTSTTEEEEEETTTCCEEEEGGGCCSTTEEEEEECCCTTCCCGGGCEEEEECTTSSSEEEEETTTCCEE
T ss_pred             CccEEEEEeeccCCCceEEEEECCCCCEEecCCCCCCCCCEEEEeccCCCCCCCCcEEEEEEeCCCCEEEEEECCCCcEE
Confidence            46799999996  456899998 679999986    3454333233    3466889999987 4 68999986 68899


Q ss_pred             EEecCC----CeeEEec---ccCCCcceEEEEEc
Q psy2222         160 SVSEQD----DSIVATS---RKAGKNEMVKLRSN  186 (264)
Q Consensus       160 s~~~~~----~~l~a~s---~~~g~~e~~~iR~~  186 (264)
                      .+....    ..|.--.   ..-+.+..|++.-.
T Consensus       123 DV~g~stanGt~V~qw~~~~~~g~~nQqW~l~~~  156 (293)
T 3ef2_A          123 DLVNGDSSDGAKIAGWTGTWDEGNPHQKWYFNRM  156 (293)
T ss_dssp             EEGGGCCSTTEEEEEECCCSSCCCGGGCEEEEEC
T ss_pred             EeCCCCCCCCCEEEEEeccCCCCCcccEEEEEec
Confidence            886532    2132222   33567788887643

>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A*

Probab=86.01  E-value=5.5  Score=32.00  Aligned_cols=81  Identities=9%  Similarity=0.139  Sum_probs=54.2

Q ss_pred             EEEEEecC---CeEEEEecCCeEEEEec----CCc-EEEeccCCCCCCceEEEEe--CCceEEecc-CceeEEEecCCC-
Q psy2222          99 FTAILVND---SKVAFKSGFDKYLSIDK----NGR-VTGRSDAVGPLEQWEPVFE--DDNMALLGA-NQCFMSVSEQDD-  166 (264)
Q Consensus        99 f~~~~v~d---t~~~lKs~~GkYLs~d~----~G~-v~a~a~a~g~~E~f~iv~~--~g~~alq~~-ng~fLs~~~~~~-  166 (264)
                      |+++++.+   +.+.|++. |+||.+..    +|. |+.-.    +..+|.|+..  +|.|.|... .|+.|.+...++ 
T Consensus        49 W~~~~~~~~~~g~y~i~n~-G~~Ldv~~~~ta~Gt~v~~~~----~~q~W~i~~~~~~G~y~I~~~~sg~~Ldv~stanG  123 (148)
T 3nbc_A           49 WTLVQLPHTTIYTMQAVNP-QSYVRVRDDNLVDGAALVGSQ----QPTPVSIESAGNSGQFRIKIPNLGLALTLPSDANS  123 (148)
T ss_dssp             EEEEECTTSSEEEEEESSS-CCEEEEGGGCCSTTCBEEEES----SCCCEEEEECSSTTCEEEECTTSSEEEECCCSSTT
T ss_pred             EEEEECCCcccceEEEEEC-CcEEEccCCCCCCCcEEecCC----CCcEEEEEEccCCCeEEEEeCCCCeEEEeecCCCC
Confidence            99999998   68999999 99998753    343 44432    2468998873  688999986 577777753221 


Q ss_pred             -eeEEecccC-CCcceEEEE
Q psy2222         167 -SIVATSRKA-GKNEMVKLR  184 (264)
Q Consensus       167 -~l~a~s~~~-g~~e~~~iR  184 (264)
                       .|.-=...- +.+..|++.
T Consensus       124 t~i~~w~~~~g~~nQ~W~~~  143 (148)
T 3nbc_A          124 TPIVLGEVDETSTNQLWAFE  143 (148)
T ss_dssp             EECEEEECCSSCGGGCEEEE
T ss_pred             cEEEEecCCCCCCCcEEEEE
Confidence             122222233 677777764

>1ybi_A HA33A, HA33/A, non-toxin haemagglutinin HA34; beta-trefoil; 1.50A {Clostridium botulinum}

Probab=85.67  E-value=13  Score=32.90  Aligned_cols=90  Identities=8%  Similarity=0.068  Sum_probs=65.5

Q ss_pred             ccccEEEEEecC-CeEEEEec----CCeEEEEecCCc-EEEeccCCCCCCceEEEE-e-CCceEEecc--CceeEEEecC
Q psy2222          95 PEEIFTAILVND-SKVAFKSG----FDKYLSIDKNGR-VTGRSDAVGPLEQWEPVF-E-DDNMALLGA--NQCFMSVSEQ  164 (264)
Q Consensus        95 ~~evf~~~~v~d-t~~~lKs~----~GkYLs~d~~G~-v~a~a~a~g~~E~f~iv~-~-~g~~alq~~--ng~fLs~~~~  164 (264)
                      .-|.|.++..+. +.+.|++.    -|.||+.+..+. |......-...+.|.++. . +|-|.|.+.  .++.|.+...
T Consensus        39 ~~Q~w~~~y~~~~~~Y~I~n~~~~~~~l~L~~~~~~~~v~~~~~~~~~~Q~W~l~k~~~dG~y~I~n~~~s~~vLdv~t~  118 (288)
T 1ybi_A           39 YLERWRLIYDSNKAAYKIKSMDIHNTNLVLTWNAPTHNISTQQDSNADNQYWLLLKDIGNNSFIIASYKNPNLVLYADTV  118 (288)
T ss_dssp             GGGCEEEEEETTTTEEEEEECCCSSSCEEEEECTTSSBEEEEECCCCGGGCEEEEEETTTTEEEEEESSCTTCEEEEETT
T ss_pred             cccEEEEEEeCCCCEEEEEEeccCCCceEEEecCCCceEEEeCCCCccceEEEEEEECCCCeEEEEECCCCCeeEEEECC
Confidence            468999999875 58888875    589999987544 666666666778899984 3 799999996  3788988742


Q ss_pred             CCeeEEecccCCCcceEEEE
Q psy2222         165 DDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       165 ~~~l~a~s~~~g~~e~~~iR  184 (264)
                      +..|..-...-+....|+|.
T Consensus       119 ~g~v~~~~~ngs~~Q~w~i~  138 (288)
T 1ybi_A          119 ARNLKLSTLNNSNYIKFIIE  138 (288)
T ss_dssp             TTEEEEECCCSSGGGCEEEE
T ss_pred             CCcEEEeCCCCCcCceEEEc
Confidence            22466655555666777665

>1sr4_C CDT C, cytolethal distending toxin protein C; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1

Probab=85.04  E-value=1.2  Score=37.01  Aligned_cols=70  Identities=11%  Similarity=0.064  Sum_probs=48.3

Q ss_pred             cCCCCCeeeccccC-------CCCCCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-c
Q psy2222          44 IENYAGWTQVKHIK-------DIVGAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-G  114 (264)
Q Consensus        44 ~~~~~~W~~~~~~~-------dI~Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~  114 (264)
                      ...+..|...+-..       +-.|-|+|.-.. ++||++..++...|       +. +..++|++++...+.|+||+ .
T Consensus        40 ~~e~~NW~l~ei~l~~~d~~~~~~G~VqFvn~~t~tCL~~~~~~~~~C-------~~-~~~t~FsiiPTttgAVQIrS~~  111 (166)
T 1sr4_C           40 NYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFLGKGTTDC-------KD-TDHTVFNLIPTNTGAFLIKDAL  111 (166)
T ss_dssp             SGGGGCEEEEECCCCTTCTTCTTCEEEEEECTTSSEEECSSTTSEEET-------TC-HHHHCEEEEEBTTSCEEEEETT
T ss_pred             ChhhCCcEEEEeccCccccccCCCCeEEEEeCCCCeeeeecCCccccC-------CC-ChhceEEEEecCCccEEEEecC
Confidence            45678999765211       113545555554 88999977755556       22 36799999999888999999 5


Q ss_pred             CCeEEEE
Q psy2222         115 FDKYLSI  121 (264)
Q Consensus       115 ~GkYLs~  121 (264)
                      .|+-|.+
T Consensus       112 ~~~CI~~  118 (166)
T 1sr4_C          112 LGFCITS  118 (166)
T ss_dssp             TCCEEEC
T ss_pred             CCceEee
Confidence            6666666

>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene}

Probab=85.04  E-value=10  Score=29.83  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=52.4

Q ss_pred             ccEEEEEecCCeEEEEe-cCCeEEEEec----CCc-EEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecC----
Q psy2222          97 EIFTAILVNDSKVAFKS-GFDKYLSIDK----NGR-VTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQ----  164 (264)
Q Consensus        97 evf~~~~v~dt~~~lKs-~~GkYLs~d~----~G~-v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~----  164 (264)
                      --+.+..++++.+.|++ +.|++|.+..    +|. |.--.-.-++..+|.+... +|.|.|++. .|+.|.+.+.    
T Consensus        17 ~~~~~~~~~~g~y~i~n~~sg~cLdv~~~~~~~g~~v~~~~c~~~~~Q~W~~~~~~~g~y~i~~~~sg~cLdv~~~~~~~   96 (165)
T 3pg0_A           17 LVPRGSHMGDGYYKLVARHSGKALDVENASTSDGANVIQYSYSGGDNQQWRLVDLGDGYYKLVARHSGKALDVENASTSD   96 (165)
T ss_dssp             ---------CCEEEEEETTTCCEEEEGGGCCSTTCBEEEECCCCCGGGCEEEEEEETTEEEEEETTTCCEEEEGGGCCST
T ss_pred             ccccceECCCCEEEEEECCCCCEEEeCCCCCCCCCEEEEECCCCCccceEEEEECCCCEEEEEECCCCCEEEeCCCCCCC
Confidence            34455667777899998 6899998853    333 4443334457889999886 689999985 6889988542    


Q ss_pred             CCeeEEecccCCCcceEEEEE
Q psy2222         165 DDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       165 ~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      +..|.--.-.-+.+..|.+.-
T Consensus        97 G~~v~~~~c~~~~~Q~W~~~~  117 (165)
T 3pg0_A           97 GANVIQYSYSGGDNQQWRLVD  117 (165)
T ss_dssp             TCBEEEECCCCCGGGCEEEEE
T ss_pred             CCEEEEEcCCCCCccEEEEEE
Confidence            222432222234566777654

>2f2f_C CDT C, cytolethal distending toxin C; actinobacillus actinomycetemcomitans, oligomerization, stability and toxic activity; 2.40A {Aggregatibacter actinomycetemcomitans} SCOP: b.42.2.1

Probab=84.86  E-value=1  Score=38.06  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=48.2

Q ss_pred             CcCCCCCeeecccc-------CCCCCCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-
Q psy2222          43 DIENYAGWTQVKHI-------KDIVGAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-  113 (264)
Q Consensus        43 d~~~~~~W~~~~~~-------~dI~Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-  113 (264)
                      ....++.|...+..       .+-.|-|+|+-.. ++||++..++...|       +.-+ .++|++++...+.|++|+ 
T Consensus        59 ~~~~~~nW~l~ei~~~~~d~~~~~~G~VqFvn~~t~tCL~~~~~~~~~C-------~~~~-~t~FsliPTtnGAVQIrS~  130 (186)
T 2f2f_C           59 HNYLSTHWELIDYKGKEYEKLRDGGTLVQFKVVGAAKCFAFPGEGTTDC-------KDID-HTVFNLIPTNTGAFLIKDA  130 (186)
T ss_dssp             TSGGGGCEEEEECCCSTTTTTCTTCEEEEEECTTSSEEECTTCSSEEET-------TCHH-HHCEEEEEBSSSCEEEEET
T ss_pred             cccccCCcEEEEecccccccccCCCCeEEEEeCCCCeeeeecCCccccC-------CCCC-cceEEEEecCCccEEEEec
Confidence            34567899966431       1212555555555 88999877755555       2222 899999999888999999 


Q ss_pred             cCCeEEEE
Q psy2222         114 GFDKYLSI  121 (264)
Q Consensus       114 ~~GkYLs~  121 (264)
                      ..|+-|.+
T Consensus       131 ~~~~Ci~~  138 (186)
T 2f2f_C          131 LLGFCMTS  138 (186)
T ss_dssp             TTCCEEEC
T ss_pred             CCCceEee
Confidence            56666666

>2x2s_A Agglutinin, agglutinin SSA; fungal lectin, beta-trefoil domain, cell adhesion; 1.60A {Sclerotinia sclerotiorum} PDB: 2x2t_A*

Probab=83.97  E-value=11  Score=30.53  Aligned_cols=75  Identities=12%  Similarity=0.223  Sum_probs=54.1

Q ss_pred             CCCCCccccEEEEEe----cCCeEEEEe-cCCeEEEEecCCcE-EEec-cCCCCCCceEEEEe----CCceEEecc--Cc
Q psy2222          90 KEGPSPEEIFTAILV----NDSKVAFKS-GFDKYLSIDKNGRV-TGRS-DAVGPLEQWEPVFE----DDNMALLGA--NQ  156 (264)
Q Consensus        90 ~e~~~~~evf~~~~v----~dt~~~lKs-~~GkYLs~d~~G~v-~a~a-~a~g~~E~f~iv~~----~g~~alq~~--ng  156 (264)
                      ++-|++-|.|.+..+    .+..+.|-. +.|+||.++..+.. +... .-.++.-.|.|+..    +|-|.|.+.  .|
T Consensus        40 ~~T~~d~qkw~~~~v~~~~~~~~Y~Iinv~sG~~L~~~~~~~~at~~q~sp~~~~~rWrI~~~G~~~~G~f~I~nk~~s~  119 (153)
T 2x2s_A           40 GDKPSDNAKWQVALVAGSGDSAEYLIINVHSGYFLTATKENHIVSTPQISPTDPSARWTIKPATTHQYEVFTINNKVSEL  119 (153)
T ss_dssp             CSSCCGGGCEEEEEEECCGGGCEEEEEETTTCCBCBCCSTTEECEECCCCTTCGGGCEEEEESCC--CCCEEEEESSGGG
T ss_pred             CCCCCCcceeEEEEEeccCCCceEEEEecCCccEEEecCCCCceEEEEEcCCCccceEEEEeccccCcceEEEecccCCC
Confidence            345777899998887    445666666 89999999988654 2221 22236778999984    689999986  67


Q ss_pred             eeEEEecC
Q psy2222         157 CFMSVSEQ  164 (264)
Q Consensus       157 ~fLs~~~~  164 (264)
                      .-|.+.+.
T Consensus       120 ~vldV~~~  127 (153)
T 2x2s_A          120 GQLTVKDY  127 (153)
T ss_dssp             CEEEEGGG
T ss_pred             ceEEeccC
Confidence            88888653

>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A

Probab=82.65  E-value=25  Score=31.04  Aligned_cols=90  Identities=9%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             ccccEEEEEec-CCeEEEEe--cCCeEEEEecCCcEEEeccCCCCCCceEEEE------eCCceEEecc--CceeEEEec
Q psy2222          95 PEEIFTAILVN-DSKVAFKS--GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVF------EDDNMALLGA--NQCFMSVSE  163 (264)
Q Consensus        95 ~~evf~~~~v~-dt~~~lKs--~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~------~~g~~alq~~--ng~fLs~~~  163 (264)
                      .-|.|.+++.. ++.|.|++  +.++.|.+.....|..-...-++.-.|.+++      .+|.|.|.+.  .|+.|.+..
T Consensus        89 ~~Q~W~l~~~~~dG~y~i~n~~~s~~vLdv~~gs~v~~~~~~g~~~Q~w~i~~~~~~~i~dG~Y~i~~~~~sgk~lDv~~  168 (286)
T 3aj6_A           89 DNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDTLMVSTQTSSSNQFFKFSNCIYEALNNRNCKLQTQLNSDRFLSKNL  168 (286)
T ss_dssp             GGGCEEEEECTTTCCEEEEESSCTTEEEEECTTSCEEEEECCSCGGGCEEEEEHHHHHHTTEEEEEEETTCTTCEEEECT
T ss_pred             cceEEEEEEeCCCCEEEEEECCCCceEEEecCCCeEEEEecCCCCceeEEEeccccccCCCceEEEEecCCCceEEEecC
Confidence            45899999885 67899999  3588999987667888888888889999987      3799999985  469999954


Q ss_pred             CCCeeEEecccCCCcceEEEE
Q psy2222         164 QDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       164 ~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      ++..|.--...-+.+..|++-
T Consensus       169 ~g~~V~~w~~~g~~nQ~W~~~  189 (286)
T 3aj6_A          169 NSQIIVLWQWIDSSRQKWIIE  189 (286)
T ss_dssp             TSSBEEEECCCCCGGGCEEEE
T ss_pred             CCceEEEeCCCCCccceEEEE
Confidence            443343322223444455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1dfca3	123	b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens	6e-19
d1dfca3	123	b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens	1e-06
d1dfca1	133	b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens	1e-16
d1hcda_	118	b.42.5.2 (A:) Histidine-rich actin-binding protein	8e-14
d1dfca4	111	b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens	8e-07
d1dfca4	111	b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens	5e-05

>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 6e-19
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 7/123 (5%)

Query: 63  ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKSGFDKYLSI 121
           + ++      VS    G      +  +++  + +E F   +  D+ K AF++   KY ++
Sbjct: 4   VVLQAANERNVST-RQG----MDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTL 58

Query: 122 DKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV 181
              G V   + +      ++  + D  + L  +N  F++  + +  + A+   AG +E+ 
Sbjct: 59  TATGGVQSTASSKNASCYFDIEWRDRRITLRASNGKFVTSKK-NGQLAASVETAGDSELF 117

Query: 182 KLR 184
            ++
Sbjct: 118 LMK 120

>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 9/89 (10%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN--MALLGANQCFMSVSEQD 165
           +V  ++  ++ +S  +   ++   D     E ++   + D    A       + ++    
Sbjct: 3   QVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTL-TAT 61

Query: 166 DSIVATSRKAGKNEM--VKLRSNSLHLKN 192
             + +T+     +    ++ R   + L+ 
Sbjct: 62  GGVQSTASSKNASCYFDIEWRDRRITLRA 90

>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 14/132 (10%)

Query: 62  AISIEFGKR----TFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND----SKVAFKS 113
           A+ I+FG       +++A   G      ++        ++I+T     D    + V  +S
Sbjct: 2   AVQIQFGLINCGNKYLTAEAFG----FKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRS 57

Query: 114 GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDN-MALLGANQCFMSVSEQDDSIVATS 172
              +YL+ DK+G VT   +  GP  ++  V  DD   +L             +D +   +
Sbjct: 58  HLGRYLAADKDGNVTCEREVPGPDCRFLIVAHDDGRWSLQSEAHRRY-FGGTEDRLSCFA 116

Query: 173 RKAGKNEMVKLR 184
           +     E   + 
Sbjct: 117 QTVSPAEKWSVH 128

>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 64.1 bits (156), Expect = 8e-14
 Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 60  VGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYL 119
           +G  + +     F+SA          +            F     +  KVA K+   KYL
Sbjct: 1   MGNRAFKSHHGHFLSAEGEA------VKTHHGHHDHHTHFHVEN-HGGKVALKTHCGKYL 53

Query: 120 SIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKA 175
           SI  + +V       G    +        +++ G +  ++S  +    +       
Sbjct: 54  SIGDHKQVYLSHHLHGDHSLFHLEHHGGKVSIKGHHHHYISA-DHHGHVSTKEHHD 108

>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 61  GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLS 120
           GA +I+     + +   +             G +P + F     + +KVA K G  +YL 
Sbjct: 39  GAYNIKDSTGKYWTVGSDSAVT-------SSGDTPVD-FFFEFCDYNKVAIKVG-GRYLK 89

Query: 121 IDKNGRVTGRSDAVGPLEQWE 141
            D  G +   ++ V P   WE
Sbjct: 90  GDHAGVLKASAETVDPASLWE 110

>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 97  EIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQ 156
           ++F  +  ND     K    KY ++  +  VT   D       +   F D N   +    
Sbjct: 30  DVFQ-LEFNDGAYNIKDSTGKYWTVGSDSAVTSSGDTP---VDFFFEFCDYNKVAIKVGG 85

Query: 157 CFMSVSEQDDSIVATSRKAGKNE 179
            ++   +    + A++       
Sbjct: 86  RYLKG-DHAGVLKASAETVDPAS 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1dfca3	123	Fascin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1dfca1	133	Fascin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1hcda_	118	Histidine-rich actin-binding protein (hisactophili	99.85
d1dfca4	111	Fascin {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1hcda_	118	Histidine-rich actin-binding protein (hisactophili	99.47
d1dfca3	123	Fascin {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1dfca1	133	Fascin {Human (Homo sapiens) [TaxId: 9606]}	99.32
d1dfca2	119	Fascin {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1dfca4	111	Fascin {Human (Homo sapiens) [TaxId: 9606]}	98.58
d2fdbm1	147	Fibroblast growth factor 8, FGF8 {Human (Homo sapi	97.58
d1dfca2	119	Fascin {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1nuna_	139	Fibroblast growth factor-10, FGF10 {Human (Homo sa	97.55
d1bfga_	126	Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960	97.44
d1rg8a_	141	Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96	97.34
d1nuna_	139	Fibroblast growth factor-10, FGF10 {Human (Homo sa	97.3
d1q1ua_	138	Fibrobast growth factor homologous factor 1 (FHF1b	97.29
d1ijta_	128	Fibroblast growth factor 4 (FGF4) {Human (Homo sap	97.18
d1q1ua_	138	Fibrobast growth factor homologous factor 1 (FHF1b	97.17
d2fdbm1	147	Fibroblast growth factor 8, FGF8 {Human (Homo sapi	97.17
d1ihka_	157	Fibroblast growth factor 9, FGF9 {Human (Homo sapi	97.11
d1rg8a_	141	Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96	96.99
d1qqka_	132	Keratinocyte growth factor, FGF7 {Rat (Rattus norv	96.89
d1ihka_	157	Fibroblast growth factor 9, FGF9 {Human (Homo sapi	96.82
d1qqka_	132	Keratinocyte growth factor, FGF7 {Rat (Rattus norv	96.82
d1bfga_	126	Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960	96.72
d1pwaa_	136	Fibroblast growth factor-19 (FGF19) {Human (Homo s	96.69
d1ijta_	128	Fibroblast growth factor 4 (FGF4) {Human (Homo sap	96.6
d1jlxa2	146	Agglutinin {Love-lies-bleeding (Amaranthus caudatu	96.45
d1upsa2	131	GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi	96.25
d1pwaa_	136	Fibroblast growth factor-19 (FGF19) {Human (Homo s	96.08
d1jlxa1	153	Agglutinin {Love-lies-bleeding (Amaranthus caudatu	95.01
d1jlxa2	146	Agglutinin {Love-lies-bleeding (Amaranthus caudatu	94.55
d1qxma1	145	Hemagglutinin component Ha1 {Clostridium botulinum	94.12
d1sr4a_	167	Cytolethal distending toxin subunit A {Haemophilus	92.79
d1upsa2	131	GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi	90.9
d1jlxa1	153	Agglutinin {Love-lies-bleeding (Amaranthus caudatu	89.54
d1sr4a_	167	Cytolethal distending toxin subunit A {Haemophilus	88.45
d1qxma2	138	Hemagglutinin component Ha1 {Clostridium botulinum	88.26
d2ihoa1	154	Agglutinin MOA, N-terminal domain {Fairy-ring mush	85.6

>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.6e-24  Score=170.70  Aligned_cols=117  Identities=17%  Similarity=0.269  Sum_probs=102.5

Q ss_pred             EEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC-eEEEEecCCeEEEEecCCcEEEeccCCCCCCce
Q psy2222          64 SIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQW  140 (264)
Q Consensus        64 ~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt-~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f  140 (264)
                      .|.|.+  ++|+++.++|.+++  +   .+.++.||+|+++...++ .++||+++|+||+++.+|.|+|++++++++|.|
T Consensus         3 qv~l~~~ngkyvsa~~G~~v~A--n---~~~~~~~e~F~le~~~~~~~~~Lr~~~gkyl~~~~~g~v~a~~~~~~~~e~F   77 (123)
T d1dfca3           3 QVVLQAANERNVSTRQGMDLSA--N---QDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGGVQSTASSKNASCYF   77 (123)
T ss_dssp             EEEEECTTSCEEEC---CBCEE--E---ECCCSGGGCEEEEECTTTCCEEEEETTTEEEEECTTSBEEEEESSCCGGGCB
T ss_pred             eEEEEecCCCEEEEcCCCEEEe--c---ccccCCcceEEEEECCCCCEEEEEeCCCCEEEEcCCCcEEEccccCCCceEE
Confidence            455555  99999998765444  3   345788999999998887 899999999999999999999999999999999


Q ss_pred             EEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEEc
Q psy2222         141 EPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSN  186 (264)
Q Consensus       141 ~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~  186 (264)
                      +|++++|+|+||+.||+||++++++. |.|+++.++.+|.|.|++.
T Consensus        78 ~~~~~~g~~alra~nG~yl~a~~~G~-l~a~~~~~g~~e~f~i~l~  122 (123)
T d1dfca3          78 DIEWRDRRITLRASNGKFVTSKKNGQ-LAASVETAGDSELFLMKLI  122 (123)
T ss_dssp             EEEEETTEEEEECTTSSBCEECSSSB-EESCCSSCCSSSEEEEEEC
T ss_pred             EEEEeCCeEEEEeCCCCEEEeCCCCE-EEEccCCCCCceEEEEEEc
Confidence            99999999999999999999998887 9999999999999999985

>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.8e-24  Score=173.59  Aligned_cols=115  Identities=20%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             CCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecC----CeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEE
Q psy2222          68 GKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND----SKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPV  143 (264)
Q Consensus        68 ~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~d----t~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv  143 (264)
                      .+++||+|++.|. .+.+.   +..+..||+|+++++++    +.|+||+++|+||+++.+|.|+|++++++++|+|+|+
T Consensus        12 ~~gkYltAe~~G~-~v~a~---~~~~~~~e~w~le~~~~~~~~~~v~Lrs~~Gkylsa~~~g~v~a~~~~~~~~E~F~~~   87 (133)
T d1dfca1          12 CGNKYLTAEAFGF-KVNAS---ASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGNVTCEREVPGPDCRFLIV   87 (133)
T ss_dssp             TTSCBCEECSSSS-CEECC---CSSCCTTTCEECC--------CCBCCBCTTSCEEEECTTSCEEEEESSCCGGGCEECC
T ss_pred             cCCcEEEEECCCC-EEEee---CCCCCCCcEEEEEEecCCCCCCEEEEEecCCCEEeeccCcceEEcCCCCCCCcEEEEE
Confidence            3499999998883 34344   34688999999998764    3899999999999999999999999999999999999


Q ss_pred             Ee-CCceEEec-cCceeEEEecCCCeeEEecccCCCcceEEEEEccc
Q psy2222         144 FE-DDNMALLG-ANQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNSL  188 (264)
Q Consensus       144 ~~-~g~~alq~-~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a~  188 (264)
                      ++ ||+|+||+ .||+||+++++ . |.|++++++++|+|.||+..+
T Consensus        88 ~~~dG~~~l~s~~nG~yl~~~~~-~-l~a~~~~~~~~e~f~v~la~~  132 (133)
T d1dfca1          88 AHDDGRWSLQSEAHRRYFGGTED-R-LSCFAQTVSPAEKWSVHIAMH  132 (133)
T ss_dssp             BCSSSCBCCEETTTCCEEEEETT-E-EEEEESSCCGGGCBEECCCSC
T ss_pred             ECCCCEEEEEEcCCCcEEEecCC-c-eEEeCCCCCCCeeEEEEeccC
Confidence            98 79999998 59999999765 3 999999999999999999764

>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.85  E-value=2.5e-21  Score=153.19  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             CCEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCce
Q psy2222          61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQW  140 (264)
Q Consensus        61 Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f  140 (264)
                      |.++|....++||.|++.|..+.      ...|++++.|+++.. +++|+||+++|+||+++.+|.|+|++++++++|.|
T Consensus         2 g~~~lrs~~gkyL~a~~~~v~~~------~~~~~~~~~F~ve~~-~g~iaLks~~GkYlsa~~~g~l~~~~~~~~~~E~F   74 (118)
T d1hcda_           2 GNRAFKSHHGHFLSAEGEAVKTH------HGHHDHHTHFHVENH-GGKVALKTHCGKYLSIGDHKQVYLSHHLHGDHSLF   74 (118)
T ss_dssp             BCSEEESSTTCEEEEETTEEEEE------CSCSSCCCCCEEEEE-TTEEEEESSSSCEEEEEETTEEEEECCCSSSSSSB
T ss_pred             ccEEeEcCCCcEEeecCCceEee------CCCCCCCceEEEEcC-CCEEEEEeCCCCEEEecCCCcEEEeccCCCCceEE
Confidence            56677777799999998875544      345788999999865 57999999999999999999999999999999999


Q ss_pred             EEEEeCCceEEeccCceeEEEecCCCeeEEe--cccCCCcceEEE
Q psy2222         141 EPVFEDDNMALLGANQCFMSVSEQDDSIVAT--SRKAGKNEMVKL  183 (264)
Q Consensus       141 ~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~--s~~~g~~e~~~i  183 (264)
                      +|++.+|+|+|++.||+||+++.++. +.|+  ...++.||+|+|
T Consensus        75 ~ie~~~g~valrs~nGkylsa~~~g~-v~~n~~~~~~~~WE~f~i  118 (118)
T d1hcda_          75 HLEHHGGKVSIKGHHHHYISADHHGH-VSTKEHHDHDTTFEEIII  118 (118)
T ss_dssp             EEEEETTEEEEECSTTCEEEECGGGC-EEEESSCSSTTCBEEECC
T ss_pred             EEEECCCEEEEEeCCCCEEEEcCCCc-eeeEcCCCCCCCceeEEC
Confidence            99999999999999999999998876 7665  455667999976

>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=112.95  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=83.4

Q ss_pred             EEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEE
Q psy2222          65 IEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPV  143 (264)
Q Consensus        65 i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv  143 (264)
                      |+|.. .-|+.+..++. .+..++      +.||+|+|+. .+++++||+++|+||+++.+|.|++++++   .+.|+++
T Consensus         4 lvLrg~~Gfv~~~~~~~-~l~~Nr------~~~e~F~l~~-~~g~y~lr~~~gkyw~~~~dG~l~~~~~~---~~~F~le   72 (111)
T d1dfca4           4 IVFRGEHGFIGCRKVTG-TLDANR------SSYDVFQLEF-NDGAYNIKDSTGKYWTVGSDSAVTSSGDT---PVDFFFE   72 (111)
T ss_dssp             BCCEETTEEEEECSSSC-BEEEEE------SSCCCBEEEE-ETTEEEEECTTSCBCEECSSCBEESCCSS---CCCBEEE
T ss_pred             EEEEcccceEEecCCCC-eEEEcC------CCCcEEEEEE-cCCEEEEEcCCCCEEEEcCCCcEEeCCCC---CCCEEEE
Confidence            44554 45777766543 232232      3579999975 67799999999999999999999887764   5889999


Q ss_pred             Ee-CCceEEeccCceeEEEecCCCeeEEecccCCCcceE
Q psy2222         144 FE-DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV  181 (264)
Q Consensus       144 ~~-~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~  181 (264)
                      +. ++++++++ ||+||+++.+|. |.|+++.++..|.|
T Consensus        73 ~~~~~~~~~~a-nGkYL~~~~~G~-L~A~~~~~~~~~lw  109 (111)
T d1dfca4          73 FCDYNKVAIKV-GGRYLKGDHAGV-LKASAETVDPASLW  109 (111)
T ss_dssp             EEETTEEEEEE-TTEEEEECGGGB-EEEEESSCCGGGCB
T ss_pred             EeCCCEEEEcc-CCeEEEeCCCCe-EEeCCCCCCccceE
Confidence            98 57899996 999999999987 99999999999887

>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.47  E-value=5.1e-14  Score=110.61  Aligned_cols=75  Identities=16%  Similarity=0.249  Sum_probs=69.8

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      +++|||+||+||.++.. .|...+..++++|.|+|++.+|+++|++.||+||++++.+. |.|++..++.+|.|.|-
T Consensus         3 ~~~lrs~~gkyL~a~~~-~v~~~~~~~~~~~~F~ve~~~g~iaLks~~GkYlsa~~~g~-l~~~~~~~~~~E~F~ie   77 (118)
T d1hcda_           3 NRAFKSHHGHFLSAEGE-AVKTHHGHHDHHTHFHVENHGGKVALKTHCGKYLSIGDHKQ-VYLSHHLHGDHSLFHLE   77 (118)
T ss_dssp             CSEEESSTTCEEEEETT-EEEEECSCSSCCCCCEEEEETTEEEEESSSSCEEEEEETTE-EEEECCCSSSSSSBEEE
T ss_pred             cEEeEcCCCcEEeecCC-ceEeeCCCCCCCceEEEEcCCCEEEEEeCCCCEEEecCCCc-EEEeccCCCCceEEEEE
Confidence            68999999999999966 57788899999999999999999999999999999999887 99999999999999875

>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.5e-13  Score=107.07  Aligned_cols=78  Identities=8%  Similarity=0.152  Sum_probs=70.1

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe--CCceEEeccCceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE--DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~--~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .|.|++++|+|++++..+.|+|+++.++.+|+|++++.  +++++|++.+|+||++++++. |.|++++++++|.|.|..
T Consensus         3 qv~l~~~ngkyvsa~~G~~v~An~~~~~~~e~F~le~~~~~~~~~Lr~~~gkyl~~~~~g~-v~a~~~~~~~~e~F~~~~   81 (123)
T d1dfca3           3 QVVLQAANERNVSTRQGMDLSANQDEETDQETFQLEIDRDTKKCAFRTHTGKYWTLTATGG-VQSTASSKNASCYFDIEW   81 (123)
T ss_dssp             EEEEECTTSCEEEC---CBCEEEECCCSGGGCEEEEECTTTCCEEEEETTTEEEEECTTSB-EEEEESSCCGGGCBEEEE
T ss_pred             eEEEEecCCCEEEEcCCCEEEecccccCCcceEEEEECCCCCEEEEEeCCCCEEEEcCCCc-EEEccccCCCceEEEEEE
Confidence            58999999999999999999999999999999999986  478999999999999998886 999999999999999976


Q ss_pred             c
Q psy2222         186 N  186 (264)
Q Consensus       186 ~  186 (264)
                      +
T Consensus        82 ~   82 (123)
T d1dfca3          82 R   82 (123)
T ss_dssp             E
T ss_pred             e
Confidence            5

>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.1e-13  Score=107.29  Aligned_cols=79  Identities=10%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             eEEEEecCCeEEEEecCC-cEEEeccCCCCCCceEEEEe-----CCceEEeccCceeEEEecCCCeeEEecccCCCcceE
Q psy2222         108 KVAFKSGFDKYLSIDKNG-RVTGRSDAVGPLEQWEPVFE-----DDNMALLGANQCFMSVSEQDDSIVATSRKAGKNEMV  181 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G-~v~a~a~a~g~~E~f~iv~~-----~g~~alq~~ng~fLs~~~~~~~l~a~s~~~g~~e~~  181 (264)
                      +|.|++++|+||+++.+| .|+|++++++.+|+|+++..     +++++|++.+|+||+++..+. |+|+++.++++|+|
T Consensus         6 ~~gl~~~~gkYltAe~~G~~v~a~~~~~~~~e~w~le~~~~~~~~~~v~Lrs~~Gkylsa~~~g~-v~a~~~~~~~~E~F   84 (133)
T d1dfca1           6 QFGLINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADKDGN-VTCEREVPGPDCRF   84 (133)
T ss_dssp             EECEECTTSCBCEECSSSSCEECCCSSCCTTTCEECC--------CCBCCBCTTSCEEEECTTSC-EEEEESSCCGGGCE
T ss_pred             EEeEEEcCCcEEEEECCCCEEEeeCCCCCCCcEEEEEEecCCCCCCEEEEEecCCCEEeeccCcc-eEEcCCCCCCCcEE
Confidence            799999999999999887 69999999999999999742     478999999999999999887 99999999999999


Q ss_pred             EEEEcc
Q psy2222         182 KLRSNS  187 (264)
Q Consensus       182 ~iR~~a  187 (264)
                      .|-.+.
T Consensus        85 ~~~~~~   90 (133)
T d1dfca1          85 LIVAHD   90 (133)
T ss_dssp             ECCBCS
T ss_pred             EEEECC
Confidence            996543

>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.3e-07  Score=72.98  Aligned_cols=105  Identities=14%  Similarity=0.272  Sum_probs=82.2

Q ss_pred             CcEEEEcC--CCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEeCC
Q psy2222          70 RTFVSALD--NGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDD  147 (264)
Q Consensus        70 ~~yL~a~~--~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g  147 (264)
                      .+|.....  .+-+.+.++-    |=.+..+|+|+- .+++++|+|.+|+||+  .+|.|+   +.+++...|++++..|
T Consensus        10 krYahls~~~~~ei~vD~~v----PWG~d~litL~f-~~grY~L~t~~~ryL~--~~G~Lv---~~~~~~t~Ftle~~~G   79 (119)
T d1dfca2          10 KRYAHLSARPADEIAVDRDV----PWGVDSLITLAF-QDQRYSVQTADHRFLR--HDGRLV---ARPEPATGYTLEFRSG   79 (119)
T ss_dssp             CCEEEECSTTSSSEEEEESS----CCTTTTCEEEEE-CSSSEEEEETTSCEEC--TTSCEE---SSCCGGGCEEEEECSS
T ss_pred             eeEEEeCCCCCCeEEEcCCC----CcccCcEEEEEE-cCCEEEEEeCCCCeEC--CCCcCc---ccCCCCcEEEEEEeCC
Confidence            78887643  4556664332    234456888876 4679999999999999  478884   6778999999999999


Q ss_pred             ceEEeccCceeEEEecCCCeeEEe-cccCCCcceEEEE
Q psy2222         148 NMALLGANQCFMSVSEQDDSIVAT-SRKAGKNEMVKLR  184 (264)
Q Consensus       148 ~~alq~~ng~fLs~~~~~~~l~a~-s~~~g~~e~~~iR  184 (264)
                      ++||+..+|+||+..+....+.+. +..+|-.|.|.+-
T Consensus        80 ~vA~rD~~G~yL~p~G~~g~Lk~gk~~~~gkdElF~Le  117 (119)
T d1dfca2          80 KVAFRDCEGRYLAPSGPSGTLKAGKATKVGKDELFALE  117 (119)
T ss_dssp             EEEEEESSSCBEEECSSSCCEEECSCSSCCSTTCEEEE
T ss_pred             eEEEEcCCCCEEeccCCCceEEcCCCCCCCceeEEEee
Confidence            999999999999999874337664 5779999999863

>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.6e-08  Score=74.70  Aligned_cols=72  Identities=22%  Similarity=0.298  Sum_probs=58.5

Q ss_pred             CCEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEecCCcEEEeccCCCCCCce
Q psy2222          61 GAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQW  140 (264)
Q Consensus        61 Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f  140 (264)
                      |...|.-.+|.|+++.++|.+..     .+   ++.+.|+++..+++++++++ +|+||+++++|.|.|++++++..|.|
T Consensus        39 g~y~lr~~~gkyw~~~~dG~l~~-----~~---~~~~~F~le~~~~~~~~~~a-nGkYL~~~~~G~L~A~~~~~~~~~lw  109 (111)
T d1dfca4          39 GAYNIKDSTGKYWTVGSDSAVTS-----SG---DTPVDFFFEFCDYNKVAIKV-GGRYLKGDHAGVLKASAETVDPASLW  109 (111)
T ss_dssp             TEEEEECTTSCBCEECSSCBEES-----CC---SSCCCBEEEEEETTEEEEEE-TTEEEEECGGGBEEEEESSCCGGGCB
T ss_pred             CEEEEEcCCCCEEEEcCCCcEEe-----CC---CCCCCEEEEEeCCCEEEEcc-CCeEEEeCCCCeEEeCCCCCCccceE
Confidence            54455555588988888886544     22   23477999998888999997 99999999999999999999999999


Q ss_pred             E
Q psy2222         141 E  141 (264)
Q Consensus       141 ~  141 (264)
                      +
T Consensus       110 E  110 (111)
T d1dfca4         110 E  110 (111)
T ss_dssp             B
T ss_pred             e
Confidence            7

>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 8, FGF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00043  Score=54.91  Aligned_cols=118  Identities=15%  Similarity=0.178  Sum_probs=86.4

Q ss_pred             EEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecC-CeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          63 ISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVND-SKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        63 ~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~d-t~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      ..|.+.. |-||.-+.+|...-     ..+.-++..++.++.++- +.|+|++ ..++||+.|+.|.|.+.++..+....
T Consensus        21 ~qLY~r~~g~~L~I~~dG~V~G-----t~~~~~~~~~l~i~sv~~~g~V~I~gv~s~~YLcmn~~G~Lyg~~~~~~~dC~   95 (147)
T d2fdbm1          21 YQLYSRTSGKHVQVLANKRINA-----MAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGKLIAKSNGKGKDCV   95 (147)
T ss_dssp             EEEEETTTSSEEEECTTSCEEE-----EECTTCGGGCEEEEEEETTTEEEEEETTTCCEEEECTTSCEEEESCCCSGGGE
T ss_pred             EEEEEcCCCEEEEECCCCcEee-----ecCCCCCcceEEEEEcCCCCEEEEEEcccccEEEEcCCCCEEEecccCCCCce
Confidence            3577776 78899998886544     133456778888988875 5899999 69999999999999999988888888


Q ss_pred             eEEEEeCCce-EEecc--CceeEEEecCCCeeEEecccC-CCcceEEEEE
Q psy2222         140 WEPVFEDDNM-ALLGA--NQCFMSVSEQDDSIVATSRKA-GKNEMVKLRS  185 (264)
Q Consensus       140 f~iv~~~g~~-alq~~--ng~fLs~~~~~~~l~a~s~~~-g~~e~~~iR~  185 (264)
                      |.=.+.++.| .+.+.  .+.||+++..|....+..... .....|-+|+
T Consensus        96 F~E~~~en~Y~~y~S~~~~~~yval~~~G~~r~g~~t~~~~~~~~FLpr~  145 (147)
T d2fdbm1          96 FTEIVLENNYTALQNAKYEGWYMAFTRKGRPRKGSKTRQHQREVHFMKRL  145 (147)
T ss_dssp             EEEEECTTSCEEEEESSSTTCBCCBCTTSCBCCGGGCCTTSGGGCEEEEC
T ss_pred             EEEEEccCCCEEEEecCCCCeEEEECCCCcEecCCCCCCCCcceeeeccC
Confidence            8655554333 45553  578999999886334433333 3557777774

>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Fascin
domain: Fascin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00061  Score=51.98  Aligned_cols=96  Identities=17%  Similarity=0.164  Sum_probs=73.6

Q ss_pred             CCCeeeccccCCCCCCEEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEecCCeEEEEec-CC
Q psy2222          47 YAGWTQVKHIKDIVGAISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKSGFDKYLSIDK-NG  125 (264)
Q Consensus        47 ~~~W~~~~~~~dI~Gp~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs~~GkYLs~d~-~G  125 (264)
                      ++.|+.+..|=..---+.|+|..|+|--=..||.|--..-+. .+.|++...|++.--+ ++++||-.+|+||+... .|
T Consensus        21 ~ei~vD~~vPWG~d~litL~f~~grY~L~t~~~ryL~~~G~L-v~~~~~~t~Ftle~~~-G~vA~rD~~G~yL~p~G~~g   98 (119)
T d1dfca2          21 DEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRL-VARPEPATGYTLEFRS-GKVAFRDCEGRYLAPSGPSG   98 (119)
T ss_dssp             SSEEEEESSCCTTTTCEEEEECSSSEEEEETTSCEECTTSCE-ESSCCGGGCEEEEECS-SEEEEEESSSCBEEECSSSC
T ss_pred             CeEEEcCCCCcccCcEEEEEEcCCEEEEEeCCCCeECCCCcC-cccCCCCcEEEEEEeC-CeEEEEcCCCCEEeccCCCc
Confidence            578998877776655677888888876666677665432222 3568888999999877 56999999999999986 58


Q ss_pred             cEEEec-cCCCCCCceEEEE
Q psy2222         126 RVTGRS-DAVGPLEQWEPVF  144 (264)
Q Consensus       126 ~v~a~a-~a~g~~E~f~iv~  144 (264)
                      .+.+.. ..+|-.|.|.++-
T Consensus        99 ~Lk~gk~~~~gkdElF~Le~  118 (119)
T d1dfca2          99 TLKAGKATKVGKDELFALEQ  118 (119)
T ss_dssp             CEEECSCSSCCSTTCEEEEE
T ss_pred             eEEcCCCCCCCceeEEEeec
Confidence            898864 6799999998863

>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor-10, FGF10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00078  Score=52.77  Aligned_cols=117  Identities=16%  Similarity=0.183  Sum_probs=82.5

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      ..|.+.++-||.-+.+|...-.     .+..++..+|.+..+..+.|+||+ ..|+||+.|+.|.|.+.. ..++...|.
T Consensus        12 ~~Ly~r~~~~L~I~~dG~V~Gt-----~~~~~~~~~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~Ly~~~-~~~~dC~F~   85 (139)
T d1nuna_          12 RKLFSFTKYFLKIEKNGKVSGT-----KKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGKLYGSK-EFNNDCKLK   85 (139)
T ss_dssp             EEEEETTSCEEEECTTSCEEEE-----CCSCCTTSCEEEEEEETTEEEEEETTTTEEEEECTTSBEEEES-SCCTTSEEE
T ss_pred             EEEEecCCeEEEECCCCeEEeE-----cCCCCcceeEEEEeeccCEEEEEEcccceEEEECCCCcEecCC-cCCCCCeEE
Confidence            4678888889999999965441     234567788888888888999999 699999999999999964 457778886


Q ss_pred             EEEeCCce-EEecc----C--ceeEEEecCCCeeEEec-ccCCCcceEEEEE
Q psy2222         142 PVFEDDNM-ALLGA----N--QCFMSVSEQDDSIVATS-RKAGKNEMVKLRS  185 (264)
Q Consensus       142 iv~~~g~~-alq~~----n--g~fLs~~~~~~~l~a~s-~~~g~~e~~~iR~  185 (264)
                      =.+.++.| +..+.    +  +.||+++..|..-.+.. ..-.....|-+|.
T Consensus        86 E~~~en~Y~~Y~S~~~~~~~~~~yval~~~G~~r~g~~t~~~~~~~~FLp~~  137 (139)
T d1nuna_          86 ERIEENGYNTYASFNWQHNGRQMYVALNGKGAPRRGQKTRRKNTSAHFLPMV  137 (139)
T ss_dssp             EEECTTSCEEEEEEEEEETTEEEECCBCTTSCBCBGGGCCTTSGGGCEEEEE
T ss_pred             EEECCCCceEEEEEeccCCCceEEEEECCCCCcccccccCCCCccccEEEEe
Confidence            66665444 33332    2  57999988775223322 2223566777764

>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Basic FGF (FGF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00099  Score=51.15  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=76.7

Q ss_pred             CEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          62 AISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        62 p~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      |-.|.... |-||.-+.+|...-     ..+.-++..+|.+..+..+.|.|++ ..++||+.++.|.|.+.. .......
T Consensus         2 ~r~LY~r~~g~~L~I~~dG~V~G-----t~~~~~~~~~l~i~s~~~g~V~i~~~~s~~yLcmn~~G~lyg~~-~~~~dC~   75 (126)
T d1bfga_           2 PKRLYCKNGGFFLRIHPDGRVDG-----VREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGRLLASK-SVTDECF   75 (126)
T ss_dssp             CEEEEETTTTEEEEECTTSCEEE-----ECCTTCGGGCEEEEECSTTEEEEEETTTTEEEEECTTSCEEEES-SCCGGGC
T ss_pred             CceeEEcCCCeEEEECCCCCEee-----ecCCCCCceEEEEEecCCCEEEEEecccccEEEEcCCCcEEecc-cCCCCcE
Confidence            56777776 78899998985543     1334456778999988888999999 799999999999999865 4577888


Q ss_pred             eEEEEeC-CceEEecc--CceeEEEecCCC
Q psy2222         140 WEPVFED-DNMALLGA--NQCFMSVSEQDD  166 (264)
Q Consensus       140 f~iv~~~-g~~alq~~--ng~fLs~~~~~~  166 (264)
                      |.-...+ +-..+.+.  .+.||.++..|.
T Consensus        76 F~E~~~en~y~~y~S~~~~~~yval~~~Gk  105 (126)
T d1bfga_          76 FFERLESNNYNTYRSRKYTSWYVALKRTGQ  105 (126)
T ss_dssp             EEEEECTTSCEEEEESSSTTCBCCBCTTSS
T ss_pred             EEEEECCCCcEEEEEcCCCCcEEEECcCCC
Confidence            8766664 54456654  678999999886

>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Acidic FGF (FGF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.0027  Score=49.70  Aligned_cols=117  Identities=12%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             CEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          62 AISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        62 p~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      +..|.+.. +-||.-+.+|...-.     .+.-++.-+|.++.+.-+.|.||+ ..++||+.|+.|.|.+.. ..++...
T Consensus        15 ~~~LY~r~~g~~L~I~~dG~V~Gt-----~~~~~~~~~l~i~s~~~g~V~Irgv~s~~YLcmn~~G~Lygs~-~~~~dC~   88 (141)
T d1rg8a_          15 PKLLYCSNGGHFLRILPDGTVDGT-----RDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQ-TPNEECL   88 (141)
T ss_dssp             CEEEEETTTTEEEEECTTSCEEEE-----CCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSCEEEES-SCCGGGC
T ss_pred             eEEEEECCCCcEEEECCCCeEecc-----cCCCCCceEEEEEEccCCEEEEEEcccccEEEECCCCCEEecC-CCCCCce
Confidence            46788887 678999989865442     233455667888888888999999 599999999999999855 4677888


Q ss_pred             eEEEEeCCce-EEecc----CceeEEEecCCCeeEEecccC-CCcceEEEE
Q psy2222         140 WEPVFEDDNM-ALLGA----NQCFMSVSEQDDSIVATSRKA-GKNEMVKLR  184 (264)
Q Consensus       140 f~iv~~~g~~-alq~~----ng~fLs~~~~~~~l~a~s~~~-g~~e~~~iR  184 (264)
                      |.=...++.| ...+.    .+.||+++..|..-.+..... .....|-+|
T Consensus        89 F~E~~~en~YntY~S~~~~~~~~yval~k~G~~r~g~~t~~~~~~~~FLp~  139 (141)
T d1rg8a_          89 FLERLEENHYNTYISKKHAEKNWFVGLKKNGSCKRGPRTHYGQKAILFLPL  139 (141)
T ss_dssp             EEEEEETTTEEEEEESTTGGGTCBCCBCTTSCBCCGGGCCTTCSTTCEEEE
T ss_pred             EEEEEccCCeEEEEEeccCCCceEEEECCCCCeeeCCCCCCCCccceEEec
Confidence            8766665545 34543    367999998886334432222 244566555

>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor-10, FGF10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.0016  Score=50.98  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=64.2

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|-+.+|.||.++++|.|.++.+.-++...|++... .|.++|++. .++||+++..|. |.+. .....+..|.=++
T Consensus        11 ~~~Ly~r~~~~L~I~~dG~V~Gt~~~~~~~~~l~~~sv~~g~V~I~gv~s~~YLcmn~~G~-Ly~~-~~~~~dC~F~E~~   88 (139)
T d1nuna_          11 WRKLFSFTKYFLKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGK-LYGS-KEFNNDCKLKERI   88 (139)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEECCSCCTTSCEEEEEEETTEEEEEETTTTEEEEECTTSB-EEEE-SSCCTTSEEEEEE
T ss_pred             eEEEEecCCeEEEECCCCeEEeEcCCCCcceeEEEEeeccCEEEEEEcccceEEEECCCCc-EecC-CcCCCCCeEEEEE
Confidence            47788888999999999999999999999999999876 689999996 899999999997 7764 3345666666654


Q ss_pred             c
Q psy2222         186 N  186 (264)
Q Consensus       186 ~  186 (264)
                      -
T Consensus        89 ~   89 (139)
T d1nuna_          89 E   89 (139)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0028  Score=49.43  Aligned_cols=121  Identities=12%  Similarity=0.169  Sum_probs=83.4

Q ss_pred             CCCCE-EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCC
Q psy2222          59 IVGAI-SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGP  136 (264)
Q Consensus        59 I~Gp~-~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~  136 (264)
                      +.|.+ .|.+.++-||.-+.+|...-     ..+..++.-+|.+..+.-+.|+||+ ..++||+.|+.|.|.+... .++
T Consensus         3 ~~g~v~rLycr~g~~L~I~~dG~V~G-----t~~~~s~~s~le~~sv~~g~V~Irgv~s~~YLcmn~~G~ly~s~~-~~~   76 (138)
T d1q1ua_           3 LKGIVTRLFSQQGYFLQMHPDGTIDG-----TKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDV-FTP   76 (138)
T ss_dssp             CCCEEEEEEETTTEEEEECTTSCEEE-----ESCTTSGGGCEEEEEEETTEEEEEETTTCCEEEECTTSCEEEESS-CCG
T ss_pred             ccceEEEEEcCCCcEEEEcCCCcEec-----ccCCCCCCceEEEEeccCCEEEEEEcccccEEEECCCCCEecCCc-CCc
Confidence            34543 57778888999999996543     1234566778888888888999999 6999999999999999765 677


Q ss_pred             CCceEEEEeCCce-EEecc--------CceeEEEecCCCeeEEeccc-CCCcceEEEEE
Q psy2222         137 LEQWEPVFEDDNM-ALLGA--------NQCFMSVSEQDDSIVATSRK-AGKNEMVKLRS  185 (264)
Q Consensus       137 ~E~f~iv~~~g~~-alq~~--------ng~fLs~~~~~~~l~a~s~~-~g~~e~~~iR~  185 (264)
                      ...|.=...++.| ...+.        .+.||+++..|..-.+.... -.....|-+|.
T Consensus        77 eC~F~E~~~en~YntY~S~~y~~~~~~r~~ylal~k~G~~r~g~~t~~~~~~~~FLpr~  135 (138)
T d1q1ua_          77 ECKFKESVFENYYVIYSSTLYRQQESGRAWFLGLNKEGQIMKGNRVKKTKPSSHFVPKP  135 (138)
T ss_dssp             GGCEEEEEETTTEEEEEEEEEECTTTCCEEECCBCTTSBBCCGGGCCTTSGGGCEEEEE
T ss_pred             ccceEEEEcCCCceEEEEeeecCCCCCccEEEEECCCCCCcccccCCCCCeeeeeeeee
Confidence            7888554444333 33321        35799999888633332222 23557777764

>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 4 (FGF4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.0026  Score=49.01  Aligned_cols=116  Identities=9%  Similarity=0.061  Sum_probs=79.7

Q ss_pred             EEEEeCC--CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCc
Q psy2222          63 ISIEFGK--RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQ  139 (264)
Q Consensus        63 ~~i~~~s--~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~  139 (264)
                      ..|.+.+  |-||.-+.+|...-. .    + .+...+|.+..+..+.|.|++ ..++||+.|+.|.|.+... .++...
T Consensus         6 ~~LY~r~~~g~~L~I~~dG~V~Gt-~----~-~~~~~~l~~~sv~~g~V~I~gv~t~~YLcmn~~G~Lygs~~-~~~eC~   78 (128)
T d1ijta_           6 RRLYCNVGIGFHLQALPDGRIGGA-H----A-DTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGKLYGSPF-FTDECT   78 (128)
T ss_dssp             EEEEECSTTCEEEEECTTSCEEEE-S----S-CCGGGCEEEEEEETTEEEEEETTTTEEEEECTTCCEEEESS-CCTTSE
T ss_pred             EEEEEeCCCceEEEECCCCcEecc-c----C-CCCceeEEEEeccCCEEEEEEeccccEEEECCCCCEEECcc-CCCCce
Confidence            4677776  668999989965432 2    1 234567888888878999999 6999999999999998665 567777


Q ss_pred             eEEEEeC-CceEEecc--CceeEEEecCCCeeEEecccC-CCcceEEEEE
Q psy2222         140 WEPVFED-DNMALLGA--NQCFMSVSEQDDSIVATSRKA-GKNEMVKLRS  185 (264)
Q Consensus       140 f~iv~~~-g~~alq~~--ng~fLs~~~~~~~l~a~s~~~-g~~e~~~iR~  185 (264)
                      |.=...+ +=..+.+.  .+.||+++..|....+..... .....|-+|+
T Consensus        79 F~E~~~en~Y~~y~S~~~~~~yval~~~Gk~r~g~~t~~~~~~~~FLprl  128 (128)
T d1ijta_          79 FKEILLPNNYNAYESYKYPGMFIALGKNGKTKKGNRVSPTMKVTHFLPRL  128 (128)
T ss_dssp             EEEEECGGGCEEEEESSSTTCBCCBCTTSSBCCGGGCCTTSGGGCEEEEC
T ss_pred             EEEEEecCCCEEEEecCCCCeEEEECCCCcEeECCccCCCCcccceeecC
Confidence            7544443 33345554  478999998886333432222 2466776664

>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0015  Score=51.04  Aligned_cols=75  Identities=11%  Similarity=0.140  Sum_probs=62.7

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      ..+|-+.+|.||.++++|.|.++.+.-++...|++... .|.++|++. .+.||+++..|. |.+.. ..+.+..|.=+
T Consensus         7 v~rLycr~g~~L~I~~dG~V~Gt~~~~s~~s~le~~sv~~g~V~Irgv~s~~YLcmn~~G~-ly~s~-~~~~eC~F~E~   83 (138)
T d1q1ua_           7 VTRLFSQQGYFLQMHPDGTIDGTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGY-LYSSD-VFTPECKFKES   83 (138)
T ss_dssp             EEEEEETTTEEEEECTTSCEEEESCTTSGGGCEEEEEEETTEEEEEETTTCCEEEECTTSC-EEEES-SCCGGGCEEEE
T ss_pred             EEEEEcCCCcEEEEcCCCcEecccCCCCCCceEEEEeccCCEEEEEEcccccEEEECCCCC-EecCC-cCCcccceEEE
Confidence            46777889999999999999999999999999999876 599999996 899999999998 77754 34566666544

>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 8, FGF8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0017  Score=51.27  Aligned_cols=77  Identities=14%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             EEEEec-CCeEEEEecCCcEEEeccCCCCCCceEEEEe--CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEE
Q psy2222         109 VAFKSG-FDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE--DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       109 ~~lKs~-~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~--~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR  184 (264)
                      ++|=+. +|.||-+.++|.|.++.+.-.+...++++..  .|.++|++. .+.||+++..|. |.+.+....+...|.=+
T Consensus        21 ~qLY~r~~g~~L~I~~dG~V~Gt~~~~~~~~~l~i~sv~~~g~V~I~gv~s~~YLcmn~~G~-Lyg~~~~~~~dC~F~E~   99 (147)
T d2fdbm1          21 YQLYSRTSGKHVQVLANKRINAMAEDGDPFAKLIVETDTFGSRVRVRGAETGLYICMNKKGK-LIAKSNGKGKDCVFTEI   99 (147)
T ss_dssp             EEEEETTTSSEEEECTTSCEEEEECTTCGGGCEEEEEEETTTEEEEEETTTCCEEEECTTSC-EEEESCCCSGGGEEEEE
T ss_pred             EEEEEcCCCEEEEECCCCcEeeecCCCCCcceEEEEEcCCCCEEEEEEcccccEEEEcCCCC-EEEecccCCCCceEEEE
Confidence            566665 4899999999999999999999999999876  368999996 899999999998 88887777778888776


Q ss_pred             Ec
Q psy2222         185 SN  186 (264)
Q Consensus       185 ~~  186 (264)
                      +-
T Consensus       100 ~~  101 (147)
T d2fdbm1         100 VL  101 (147)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 9, FGF9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0018  Score=51.75  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             eEEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         108 KVAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      ..+|-+.+|.||.+.++|.|.++.+...+...|+++.. .|.++|++. .+.||+++..|. |.+. ...+.+..|.=++
T Consensus        12 ~~qLy~r~g~~L~I~~dG~V~Gt~~~~s~~s~lei~sv~~g~V~Irgv~s~~YLcmn~~G~-Lygs-~~~~~dC~F~E~~   89 (157)
T d1ihka_          12 RRQLYCRTGFHLEIFPNGTIQGTRKDHSRFGILEFISIAVGLVSIRGVDSGLYLGMNEKGE-LYGS-EKLTQECVFREQF   89 (157)
T ss_dssp             EEEEEETTSCEEEECTTSCEEEESSTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTCC-EEEE-SSCCGGGCEEEEE
T ss_pred             EEEEEecCCcEEEECCCCeEEeeccCCCCcceEEEEeccCCEEEEEEcccccEEEECCCCC-EEec-CCCCCCceEEEEE
Confidence            46788888999999999999999999999999998876 599999986 899999999998 8774 4456667776654

>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Acidic FGF (FGF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0033  Score=49.22  Aligned_cols=76  Identities=12%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             EEEEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         109 VAFKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       109 ~~lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .+|=+-+ |.||.+.++|.|.++.+.-.+...|+++.. .|.++|++. .++||+++..|. |.+.. ....+..|.-++
T Consensus        16 ~~LY~r~~g~~L~I~~dG~V~Gt~~~~~~~~~l~i~s~~~g~V~Irgv~s~~YLcmn~~G~-Lygs~-~~~~dC~F~E~~   93 (141)
T d1rg8a_          16 KLLYCSNGGHFLRILPDGTVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGL-LYGSQ-TPNEECLFLERL   93 (141)
T ss_dssp             EEEEETTTTEEEEECTTSCEEEECCTTCTTCCEEEEEEETTEEEEEETTTCCEEEECTTSC-EEEES-SCCGGGCEEEEE
T ss_pred             EEEEECCCCcEEEECCCCeEecccCCCCCceEEEEEEccCCEEEEEEcccccEEEECCCCC-EEecC-CCCCCceEEEEE
Confidence            4455544 889999999999999999889999999877 589999996 899999999998 87743 456677777665


Q ss_pred             c
Q psy2222         186 N  186 (264)
Q Consensus       186 ~  186 (264)
                      .
T Consensus        94 ~   94 (141)
T d1rg8a_          94 E   94 (141)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Keratinocyte growth factor, FGF7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.89  E-value=0.0034  Score=48.50  Aligned_cols=116  Identities=13%  Similarity=0.176  Sum_probs=79.5

Q ss_pred             EEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEE
Q psy2222          64 SIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEP  142 (264)
Q Consensus        64 ~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~i  142 (264)
                      .|.+.++-+|.-+.+|...-     ..+..++..+|.+..+.-+.|+|++ ..++||+.|+.|.|.+... ......|.=
T Consensus         6 ~Ly~r~~~~L~I~~dG~V~G-----t~~~~~~~s~l~~~sv~~~~V~I~gv~s~~YLcmn~~G~Ly~~~~-~~~dC~F~E   79 (132)
T d1qqka_           6 RLFCRTQWYLRIDKRGKVKG-----TQEMRNSYNIMEIRTVAVGIVAIKGVESEYYLAMNKEGKLYAKKE-CNEDCNFKE   79 (132)
T ss_dssp             EEEETTSCEEEECTTSCEEE-----ESCTTCSTTEEEEEECSSSEEEEEETTTCCCCEECTTCCEECCSS-CCSTTCEEC
T ss_pred             EEEecCCcEEEECCCCcEee-----EcCCCCcceeeEEEEcccCEEEEEEcccCCEEeECCCCcEecccc-CCCCcEEEE
Confidence            56677777888888886543     1234567788999988888999999 5899999999999999765 467777754


Q ss_pred             EEeCCce-EEecc------CceeEEEecCCCeeEEecccCC-CcceEEEEE
Q psy2222         143 VFEDDNM-ALLGA------NQCFMSVSEQDDSIVATSRKAG-KNEMVKLRS  185 (264)
Q Consensus       143 v~~~g~~-alq~~------ng~fLs~~~~~~~l~a~s~~~g-~~e~~~iR~  185 (264)
                      ...++.| .+.+.      ...||+++..|....+.....+ ....|-+|.
T Consensus        80 ~~~en~Y~ty~S~~~~~~~~~~yval~~~G~~r~g~~t~~~~~~~~FLp~~  130 (132)
T d1qqka_          80 LILENHYNTYASAKWTHSGGEMFVALNQKGLPVKGKKTKKEQKTAHFLPMA  130 (132)
T ss_dssp             CEETTTEECCEESCC---CCCCBCCBCTTSCBCCGGGCCTTSSTTCEEEEC
T ss_pred             EEccCCcEEEEEEEecCCCCcEEEEECCCCCCcCCCcCCCCCcceeEEeee
Confidence            4554444 23332      2479999888763334322222 456676664

>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 9, FGF9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.0095  Score=47.32  Aligned_cols=117  Identities=14%  Similarity=0.173  Sum_probs=82.6

Q ss_pred             EEEEeCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceE
Q psy2222          63 ISIEFGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWE  141 (264)
Q Consensus        63 ~~i~~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~  141 (264)
                      ..|.+.++-+|.-+.+|...-     ..+..++.-+|.+..+.-+.|+||+ ..|+|||.|..|.|.+. ...++...|.
T Consensus        13 ~qLy~r~g~~L~I~~dG~V~G-----t~~~~s~~s~lei~sv~~g~V~Irgv~s~~YLcmn~~G~Lygs-~~~~~dC~F~   86 (157)
T d1ihka_          13 RQLYCRTGFHLEIFPNGTIQG-----TRKDHSRFGILEFISIAVGLVSIRGVDSGLYLGMNEKGELYGS-EKLTQECVFR   86 (157)
T ss_dssp             EEEEETTSCEEEECTTSCEEE-----ESSTTCGGGCEEEEEEETTEEEEEETTTCCEEEECTTCCEEEE-SSCCGGGCEE
T ss_pred             EEEEecCCcEEEECCCCeEEe-----eccCCCCcceEEEEeccCCEEEEEEcccccEEEECCCCCEEec-CCCCCCceEE
Confidence            478888888899998996543     1234567778888888888999999 69999999999999996 4567788886


Q ss_pred             EEEeCCce-EEecc--------CceeEEEecCCCeeEEeccc-CCCcceEEEEE
Q psy2222         142 PVFEDDNM-ALLGA--------NQCFMSVSEQDDSIVATSRK-AGKNEMVKLRS  185 (264)
Q Consensus       142 iv~~~g~~-alq~~--------ng~fLs~~~~~~~l~a~s~~-~g~~e~~~iR~  185 (264)
                      =.+.++.| +..+.        ...||+++..|..-.+.... -.....|-+|.
T Consensus        87 E~~~eN~YntY~S~~y~~~~~~r~wyval~k~G~~r~g~~t~~~~~~~~FLpr~  140 (157)
T d1ihka_          87 EQFEENWYNTYSSNLYKHVDTGRRYYVALNKDGTPREGTRTKRHQKFTHFLPRP  140 (157)
T ss_dssp             EEEEETTEEEEEEEEEECTTTCCEEECCBCTTSCBCCGGGCCTTSGGGCEEEEC
T ss_pred             EEEccCCceeEEeeecCCCCCCceEEEEECCCCCCcccCccCCCCeeeeeECcc
Confidence            55554434 34332        23599999888633333222 23557887773

>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Keratinocyte growth factor, FGF7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.82  E-value=0.0031  Score=48.77  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=61.4

Q ss_pred             EEEEecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         109 VAFKSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       109 ~~lKs~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      .+|-+.+|.||.++++|.|.++.+..++...|++... .|.++|++. .+.||+++..|. |.+.. ....+..|.=++
T Consensus         5 ~~Ly~r~~~~L~I~~dG~V~Gt~~~~~~~s~l~~~sv~~~~V~I~gv~s~~YLcmn~~G~-Ly~~~-~~~~dC~F~E~~   81 (132)
T d1qqka_           5 RRLFCRTQWYLRIDKRGKVKGTQEMRNSYNIMEIRTVAVGIVAIKGVESEYYLAMNKEGK-LYAKK-ECNEDCNFKELI   81 (132)
T ss_dssp             EEEEETTSCEEEECTTSCEEEESCTTCSTTEEEEEECSSSEEEEEETTTCCCCEECTTCC-EECCS-SCCSTTCEECCE
T ss_pred             EEEEecCCcEEEECCCCcEeeEcCCCCcceeeEEEEcccCEEEEEEcccCCEEeECCCCc-Eeccc-cCCCCcEEEEEE
Confidence            5677778999999999999999999999999999887 489999986 899999999987 77643 345556665444

>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Basic FGF (FGF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0062  Score=46.48  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=61.0

Q ss_pred             EEecC-CeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEEcc
Q psy2222         111 FKSGF-DKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRSNS  187 (264)
Q Consensus       111 lKs~~-GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~a  187 (264)
                      |=+-+ |.||.+.++|.|.++.+.-.+...|++... .|.+.|++. .+.||+++..|. |.+.. .......|.-++..
T Consensus         5 LY~r~~g~~L~I~~dG~V~Gt~~~~~~~~~l~i~s~~~g~V~i~~~~s~~yLcmn~~G~-lyg~~-~~~~dC~F~E~~~e   82 (126)
T d1bfga_           5 LYCKNGGFFLRIHPDGRVDGVREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGR-LLASK-SVTDECFFFERLES   82 (126)
T ss_dssp             EEETTTTEEEEECTTSCEEEECCTTCGGGCEEEEECSTTEEEEEETTTTEEEEECTTSC-EEEES-SCCGGGCEEEEECT
T ss_pred             eEEcCCCeEEEECCCCCEeeecCCCCCceEEEEEecCCCEEEEEecccccEEEEcCCCc-EEecc-cCCCCcEEEEEECC
Confidence            33433 899999999999999999888999999876 588999995 899999999987 77644 34667888777653

>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor-19 (FGF19)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0067  Score=47.12  Aligned_cols=111  Identities=14%  Similarity=0.085  Sum_probs=70.5

Q ss_pred             CCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEEEEeCC
Q psy2222          69 KRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFEDD  147 (264)
Q Consensus        69 s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~~g  147 (264)
                      ++-||..+.+|...-..     + .++.-+|.+..+.-+.|.||+ ..|+||+.|..|.|.+..........|.=.+.++
T Consensus        16 ~g~~L~I~~dG~V~Gt~-----d-~s~~silei~sv~~g~V~I~gv~s~~YLcmn~~G~Ly~s~~~~~edC~F~E~~~eN   89 (136)
T d1pwaa_          16 SSCFLRIRADGVVDCAR-----G-QSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGKMQGLLQYSEEDCAFEEEIRPD   89 (136)
T ss_dssp             CCEEEEECTTSBEEEES-----S-CCGGGCEEEEEEETTEEEEEETTTCCEEEECGGGCEEEESSCCHHHHEEEEEECTT
T ss_pred             ccEEEEECCCCcCccee-----C-CCCCEEEEEEcccCCEEEEEEccCceEEEECCCCCEEECCCCCCCCCeEEEEEccC
Confidence            35689999999554321     1 245567888888778999999 6999999999999999766554456785445543


Q ss_pred             ce-EEec-cCceeEEEecCCCeeEEec-ccCCCcceEEEEEc
Q psy2222         148 NM-ALLG-ANQCFMSVSEQDDSIVATS-RKAGKNEMVKLRSN  186 (264)
Q Consensus       148 ~~-alq~-~ng~fLs~~~~~~~l~a~s-~~~g~~e~~~iR~~  186 (264)
                      .| ...+ .++.||++...+. ..+.. ..-.....|-+|+.
T Consensus        90 ~YntY~S~~~~~yvaL~rg~~-~~g~~t~~~~~~~~FLpr~~  130 (136)
T d1pwaa_          90 GYNVYRSEKHRLPVSLSSAKQ-RQLYKNRGFLPLSHFLPMLP  130 (136)
T ss_dssp             SCEEEEETTTTEECCCC--------------CTTCCBEEECC
T ss_pred             CcEEEEECCCCeEEEECCCCc-ccCcCcCCCCcceeeecCCC
Confidence            34 5555 3789999976443 33322 22345667777754

>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor 4 (FGF4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0082  Score=46.06  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=56.3

Q ss_pred             EecCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEEc
Q psy2222         112 KSGFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRSN  186 (264)
Q Consensus       112 Ks~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~~  186 (264)
                      ++.+|.||.+.++|.|.++.+ ..+...|++... .|.++|++. .++||+++..|. |.+.. ..+.+..|.=++-
T Consensus        11 r~~~g~~L~I~~dG~V~Gt~~-~~~~~~l~~~sv~~g~V~I~gv~t~~YLcmn~~G~-Lygs~-~~~~eC~F~E~~~   84 (128)
T d1ijta_          11 NVGIGFHLQALPDGRIGGAHA-DTRDSLLELSPVERGVVSIFGVASRFFVAMSSKGK-LYGSP-FFTDECTFKEILL   84 (128)
T ss_dssp             CSTTCEEEEECTTSCEEEESS-CCGGGCEEEEEEETTEEEEEETTTTEEEEECTTCC-EEEES-SCCTTSEEEEEEC
T ss_pred             eCCCceEEEECCCCcEecccC-CCCceeEEEEeccCCEEEEEEeccccEEEECCCCC-EEECc-cCCCCceEEEEEe
Confidence            456699999999999999875 466778888766 589999986 899999999987 77643 3556666765543

>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Agglutinin
family: Agglutinin
domain: Agglutinin
species: Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]

Probab=96.45  E-value=0.033  Score=43.27  Aligned_cols=115  Identities=9%  Similarity=0.213  Sum_probs=74.5

Q ss_pred             EEeCC--CcEEEEcCCCc---eEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEecCCcEEEeccCCC---
Q psy2222          65 IEFGK--RTFVSALDNGL---FILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDKNGRVTGRSDAVG---  135 (264)
Q Consensus        65 i~~~s--~~yL~a~~~G~---f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g---  135 (264)
                      |.|+.  +.||.+..-+.   +.++..    +--+|.-.|.+...+++.|.||+ ++|||+--....=+.|.++..+   
T Consensus        12 V~fkg~NgkYLry~~~~~~~~LqF~sd----dI~dp~v~~~v~~~~~g~V~iks~~~nKfWRRs~pNWI~ads~D~~~s~   87 (146)
T d1jlxa2          12 VTFKGNNGKYLGVITINQLPCLQFGYD----NLNDPKVAHQMFVTSNGTICIKSNYMNKFWRLSTDDWILVDGNDPRETN   87 (146)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEEEEC----CTTCGGGCEEEEECTTSCEEEEETTTTEEEEECGGGBEEEEECCHHHHC
T ss_pred             EEEecCCCcEEEEEEecCcceeEeccc----ccCCccceEEEEECCCCeEEEEeccCCceeecCCCCeEEecCCCCCCCC
Confidence            44544  88988765443   222222    22334445555566777999999 7999999664346777776442   


Q ss_pred             -CCCceEEEEe-CCceEEecc-CceeEEEec---CC--CeeEEecccCCCcceEEE
Q psy2222         136 -PLEQWEPVFE-DDNMALLGA-NQCFMSVSE---QD--DSIVATSRKAGKNEMVKL  183 (264)
Q Consensus       136 -~~E~f~iv~~-~g~~alq~~-ng~fLs~~~---~~--~~l~a~s~~~g~~e~~~i  183 (264)
                       +...|.|+.. ++.++||.. |++|+.--.   ++  +=|.|.+.+|..+..+.|
T Consensus        88 ~~~TLF~p~~~dd~~i~Lrnlgn~~f~~rlt~g~~g~~sCLnA~~~tid~ea~l~v  143 (146)
T d1jlxa2          88 EAAALFRSDVHDFNVISLLNMQKTWFIKRFTSGKPGFINCMNAATQNVDETAILEI  143 (146)
T ss_dssp             CGGGCEEEEEEETTEEEEEETTTTEEEEEECCSSTTCCSEEEEEESSCCGGGCEEE
T ss_pred             CcceeEeEEeecCCeeehhhcCCcceeeeeccCCCCccchhhccCCCcChhheeEE
Confidence             3456888876 578999986 899987642   22  225666777777776665

>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
domain: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
species: Clostridium perfringens [TaxId: 1502]

Probab=96.25  E-value=0.07  Score=40.44  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=71.4

Q ss_pred             CCcEEEE-cCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEec-CCc-EEEeccCCCCCCceEEEE
Q psy2222          69 KRTFVSA-LDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDK-NGR-VTGRSDAVGPLEQWEPVF  144 (264)
Q Consensus        69 s~~yL~a-~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~-~G~-v~a~a~a~g~~E~f~iv~  144 (264)
                      +|.||.. ..+|...++.+..   --+.-|.|.++.. ++.+.|+. +.|+||.+.. .|. ++...+......+|.|+.
T Consensus        10 sGk~L~v~~~~~~~~~~~~~~---~~~~~qqW~~~~~-~g~y~i~n~~sg~~l~~~~~sg~~~~~~~~~~~~~qqW~l~~   85 (131)
T d1upsa2          10 TGKFLYIEENNDKVSYGDITL---KNEKNAKWSKEYR-DGYTLLKNNETGEYLNIENQTGYIEHGKVPKTWWSAQWSEVP   85 (131)
T ss_dssp             TCCEEECCTTCSSCEEECCCT---TTTGGGCEEEEEE-TTEEEEEETTTCCEEECTTCCSBCEEECCCTTCGGGCEEEEE
T ss_pred             CCcEEEEeCCCCcEEEecccc---CCCcccEEEEEeC-CCEEEEEECCCCcEEEccCCCCceEEEccCCCChhHeEEEEe
Confidence            4999984 3344555544422   1234578999876 67899999 6899999864 344 444445666788999998


Q ss_pred             eCCceEEecc--CceeEEEecCCCeeEEecc-cCCCcceEEE
Q psy2222         145 EDDNMALLGA--NQCFMSVSEQDDSIVATSR-KAGKNEMVKL  183 (264)
Q Consensus       145 ~~g~~alq~~--ng~fLs~~~~~~~l~a~s~-~~g~~e~~~i  183 (264)
                      .+|-+.|.+.  .|.+|-+....-...+.-. .-.....|++
T Consensus        86 ~gg~~~i~n~~~s~~~L~v~~~sG~~~~~~~~~~~~~qqW~l  127 (131)
T d1upsa2          86 VDGYTRFVNRWKPNMSIHTESYEGVLQYGNVPNTYWTSQWQL  127 (131)
T ss_dssp             ETTEEEEEESSSTTCEEECTTCCSBCEEECCCTTCGGGCEEE
T ss_pred             cCCcEEEEEeccCCeEEEEecCCcceeeeeccCCCcCccEEE
Confidence            8888888875  4889988654322333322 2224455554

>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Cytokine
family: Fibroblast growth factors (FGF)
domain: Fibroblast growth factor-19 (FGF19)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.013  Score=45.48  Aligned_cols=69  Identities=10%  Similarity=0.079  Sum_probs=53.2

Q ss_pred             CCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccCCCcceEEEEE
Q psy2222         115 FDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       115 ~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~g~~e~~~iR~  185 (264)
                      +|-||.++.+|.|.++.+ .++...|++..- -|.+.|++. .+.||+++..|. +.+......++..|.=++
T Consensus        16 ~g~~L~I~~dG~V~Gt~d-~s~~silei~sv~~g~V~I~gv~s~~YLcmn~~G~-Ly~s~~~~~edC~F~E~~   86 (136)
T d1pwaa_          16 SSCFLRIRADGVVDCARG-QSAHSLLEIKAVALRTVAIKGVHSVRYLCMGADGK-MQGLLQYSEEDCAFEEEI   86 (136)
T ss_dssp             CCEEEEECTTSBEEEESS-CCGGGCEEEEEEETTEEEEEETTTCCEEEECGGGC-EEEESSCCHHHHEEEEEE
T ss_pred             ccEEEEECCCCcCcceeC-CCCCEEEEEEcccCCEEEEEEccCceEEEECCCCC-EEECCCCCCCCCeEEEEE
Confidence            688999999999999987 477888888765 588999986 899999999987 776544333334554443

>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Agglutinin
family: Agglutinin
domain: Agglutinin
species: Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]

Probab=95.01  E-value=0.057  Score=42.17  Aligned_cols=68  Identities=22%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             eEEEEecCC-eEEEEe-----cCCcEEEeccCCC-CCCceEEEEe---CCceEEecc-CceeEEE-ecCCCeeEEecccC
Q psy2222         108 KVAFKSGFD-KYLSID-----KNGRVTGRSDAVG-PLEQWEPVFE---DDNMALLGA-NQCFMSV-SEQDDSIVATSRKA  175 (264)
Q Consensus       108 ~~~lKs~~G-kYLs~d-----~~G~v~a~a~a~g-~~E~f~iv~~---~g~~alq~~-ng~fLs~-~~~~~~l~a~s~~~  175 (264)
                      -++|||-|| +||..-     ..|-+.+.++-|+ |.-.|++...   +|.+.|++. +|+|..- .++..=|.|+++.+
T Consensus         6 ~v~FKs~n~~kYLry~ae~~e~~~~lqF~~ddI~dP~v~~~ve~~~~~dg~Vhik~~~~nKfWrR~spn~~wI~a~aD~~   85 (153)
T d1jlxa1           6 IMCLKSNNHQKYLRYQSDNIQQYGLLQFSADKILDPLAQFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWITASANEP   85 (153)
T ss_dssp             EEEEEETTTTEEEEECCSSSTTTTBEEEEESSTTCTTCCEEEEECSSSTTCEEEEETTTCCEEEESSTTCCBEEEEESSC
T ss_pred             EEEEeccCCCeeEEEEecccccccceEecccccCCcceeEEEEeccCCCceEEEEeccCCceeeeCCCCceEEEecCCCC
Confidence            489999876 999843     4466999998887 8889999874   699999986 7999955 44443366665554

>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Agglutinin
family: Agglutinin
domain: Agglutinin
species: Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]

Probab=94.55  E-value=0.089  Score=40.70  Aligned_cols=77  Identities=16%  Similarity=0.179  Sum_probs=58.2

Q ss_pred             eEEEEecCCeEEEEecC---CcEEEeccCCC-CCCceEEEEe-CCceEEecc-CceeEEEecCCCeeEEecccC----CC
Q psy2222         108 KVAFKSGFDKYLSIDKN---GRVTGRSDAVG-PLEQWEPVFE-DDNMALLGA-NQCFMSVSEQDDSIVATSRKA----GK  177 (264)
Q Consensus       108 ~~~lKs~~GkYLs~d~~---G~v~a~a~a~g-~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~~~~l~a~s~~~----g~  177 (264)
                      .|+||.-+|+||.....   +-|.+.++-|+ |.-.|++..+ +|.+.|++. +|+|..-..++- |.|+++..    -.
T Consensus        11 ~V~fkg~NgkYLry~~~~~~~~LqF~sddI~dp~v~~~v~~~~~g~V~iks~~~nKfWRRs~pNW-I~ads~D~~~s~~~   89 (146)
T d1jlxa2          11 YVTFKGNNGKYLGVITINQLPCLQFGYDNLNDPKVAHQMFVTSNGTICIKSNYMNKFWRLSTDDW-ILVDGNDPRETNEA   89 (146)
T ss_dssp             SEEEECTTSCEEEEEEETTEEEEEEEECCTTCGGGCEEEEECTTSCEEEEETTTTEEEEECGGGB-EEEEECCHHHHCCG
T ss_pred             eEEEecCCCcEEEEEEecCcceeEecccccCCccceEEEEECCCCeEEEEeccCCceeecCCCCe-EEecCCCCCCCCCc
Confidence            48999999999998754   45888888887 7778888877 799999996 899998765444 77765443    33


Q ss_pred             cceEEEEE
Q psy2222         178 NEMVKLRS  185 (264)
Q Consensus       178 ~e~~~iR~  185 (264)
                      .+.|.+.+
T Consensus        90 ~TLF~p~~   97 (146)
T d1jlxa2          90 AALFRSDV   97 (146)
T ss_dssp             GGCEEEEE
T ss_pred             ceeEeEEe
Confidence            45666554

>d1qxma1 b.42.2.1 (A:4-148) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Hemagglutinin component Ha1
species: Clostridium botulinum D phage [TaxId: 29342]

Probab=94.12  E-value=0.84  Score=34.57  Aligned_cols=90  Identities=11%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             ccccEEEEEecCC-eEEEEe-cCCeEEEE-e-cCCcEEEeccCCCCCCceEEEEe--CCceEEecc--CceeEEEecCCC
Q psy2222          95 PEEIFTAILVNDS-KVAFKS-GFDKYLSI-D-KNGRVTGRSDAVGPLEQWEPVFE--DDNMALLGA--NQCFMSVSEQDD  166 (264)
Q Consensus        95 ~~evf~~~~v~dt-~~~lKs-~~GkYLs~-d-~~G~v~a~a~a~g~~E~f~iv~~--~g~~alq~~--ng~fLs~~~~~~  166 (264)
                      ..|.|.++...+. .+.|++ +.|++|.+ + ..+.|+.-...-++..+|.++..  +|.|.|+..  .++.|-+.+.+.
T Consensus        41 ~nQkW~~~~~~~~g~Y~I~~~~s~~~l~~~~~~g~~v~~~~~~g~~~Q~W~i~~~~~~g~y~I~n~~ns~~vLDv~gg~~  120 (145)
T d1qxma1          41 ANQKWRLIYDTNKQAYKIKVMDNTSLILTWNAPLSSVSVKTDTNGDNQYWYLLQNYISRNVIIRNYMNPNLVLQYNIDDT  120 (145)
T ss_dssp             GGGCEEEEEETTTTEEEEEESSSSCCEEEECTTSSCEEEECCCCCGGGCEEEEECTTTCCEEEEESSCTTEEEEECTTSC
T ss_pred             hhheEEEEEcCCCCEEEEEECCCCCEEEeccCCCceEEEEcCCCCchheEEEeecCCCCEEEEEEccCCCEEEEecCCce
Confidence            4699999987774 889999 46777665 2 33557666777888999999764  688999974  488999977655


Q ss_pred             eeEEecccCCCcceEEEEE
Q psy2222         167 SIVATSRKAGKNEMVKLRS  185 (264)
Q Consensus       167 ~l~a~s~~~g~~e~~~iR~  185 (264)
                       |..-+..-+.+-+|++.-
T Consensus       121 -v~~~~~~g~~nQ~w~~~~  138 (145)
T d1qxma1         121 -LMVSTQTSSSNQFFKFSN  138 (145)
T ss_dssp             -EEEEECCSCGGGCEEEEE
T ss_pred             -EEEeCCCCCcccEEEEec
Confidence             766666678888888864

>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Cytolethal distending toxin subunit A
species: Haemophilus ducreyi [TaxId: 730]

Probab=92.79  E-value=0.25  Score=38.79  Aligned_cols=70  Identities=6%  Similarity=0.003  Sum_probs=55.6

Q ss_pred             ccccEEEEEec-CCeEEEEe-cCCeEEEEecCCcEEEeccCCCCCCceEEEEe-CCceEEecc-CceeEEEecC
Q psy2222          95 PEEIFTAILVN-DSKVAFKS-GFDKYLSIDKNGRVTGRSDAVGPLEQWEPVFE-DDNMALLGA-NQCFMSVSEQ  164 (264)
Q Consensus        95 ~~evf~~~~v~-dt~~~lKs-~~GkYLs~d~~G~v~a~a~a~g~~E~f~iv~~-~g~~alq~~-ng~fLs~~~~  164 (264)
                      ..|.|.+++.. ++.|+|+. +.|+.|.++..|.+.-..+.-.+.-+|.++.. +|-|.|++. .|+-|.+...
T Consensus        56 ~~Q~W~~~~~~~~g~~~i~N~~sg~CLd~~g~~v~q~~C~~~~~~Q~W~~~~~~~G~~~i~n~~sg~CLdv~~~  129 (167)
T d1sr4a_          56 NIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNGLIHDICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPV  129 (167)
T ss_dssp             GGGCEEEEECSSTTCEEEEETTTCCEEEEETTEEEEECCCTTCGGGCEEEEEBTTSCEEEEETTTCCEEEECSS
T ss_pred             ccceEEEEecCCCCEEEEEECCCCcEEecCCCcEEEEecCCCChHHeEEEEEecCceEEEEeccccEEEEecCC
Confidence            46999999974 56899998 78999999877766655555556788999988 688999986 7888888654

>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
domain: GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain
species: Clostridium perfringens [TaxId: 1502]

Probab=90.90  E-value=0.42  Score=35.81  Aligned_cols=76  Identities=14%  Similarity=0.161  Sum_probs=50.2

Q ss_pred             EEEEe-cCCeEEEEec-CC-cEEEeccCC-CCCCceEEEEeCCceEEecc-CceeEEEecCCCeeE-EecccCCCcceEE
Q psy2222         109 VAFKS-GFDKYLSIDK-NG-RVTGRSDAV-GPLEQWEPVFEDDNMALLGA-NQCFMSVSEQDDSIV-ATSRKAGKNEMVK  182 (264)
Q Consensus       109 ~~lKs-~~GkYLs~d~-~G-~v~a~a~a~-g~~E~f~iv~~~g~~alq~~-ng~fLs~~~~~~~l~-a~s~~~g~~e~~~  182 (264)
                      +.||. ..|+||.+.. .| ..+..-+.. ++..+|.++..+|.|.|++. .|+||.+.....++. ...........|.
T Consensus         3 Y~I~N~~sGk~L~v~~~~~~~~~~~~~~~~~~~qqW~~~~~~g~y~i~n~~sg~~l~~~~~sg~~~~~~~~~~~~~qqW~   82 (131)
T d1upsa2           3 YLIRNRQTGKFLYIEENNDKVSYGDITLKNEKNAKWSKEYRDGYTLLKNNETGEYLNIENQTGYIEHGKVPKTWWSAQWS   82 (131)
T ss_dssp             EEEEETTTCCEEECCTTCSSCEEECCCTTTTGGGCEEEEEETTEEEEEETTTCCEEECTTCCSBCEEECCCTTCGGGCEE
T ss_pred             EEEEEccCCcEEEEeCCCCcEEEeccccCCCcccEEEEEeCCCEEEEEECCCCcEEEccCCCCceEEEccCCCChhHeEE
Confidence            66777 6899998654 23 333333333 34468999877999999986 799999965432232 2344455667777


Q ss_pred             EE
Q psy2222         183 LR  184 (264)
Q Consensus       183 iR  184 (264)
                      |.
T Consensus        83 l~   84 (131)
T d1upsa2          83 EV   84 (131)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Agglutinin
family: Agglutinin
domain: Agglutinin
species: Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]

Probab=89.54  E-value=1.7  Score=33.50  Aligned_cols=95  Identities=18%  Similarity=0.242  Sum_probs=56.8

Q ss_pred             CEEEEeCC---CcEEE--Ec---CCCceEeeccCCCCCCCCccccEEEEEec--CCeEEEEe-cCCeEEEE-ecCCc-EE
Q psy2222          62 AISIEFGK---RTFVS--AL---DNGLFILGAIHEDKEGPSPEEIFTAILVN--DSKVAFKS-GFDKYLSI-DKNGR-VT  128 (264)
Q Consensus        62 p~~i~~~s---~~yL~--a~---~~G~f~~~~~~~~~e~~~~~evf~~~~v~--dt~~~lKs-~~GkYLs~-d~~G~-v~  128 (264)
                      |-.+.|++   ..||.  |+   ..|...++...    -.+|.-.|.+....  ++.|.+|+ +.|||+.- .+++. ++
T Consensus         4 Pk~v~FKs~n~~kYLry~ae~~e~~~~lqF~~dd----I~dP~v~~~ve~~~~~dg~Vhik~~~~nKfWrR~spn~~wI~   79 (153)
T d1jlxa1           4 PVIMCLKSNNHQKYLRYQSDNIQQYGLLQFSADK----ILDPLAQFEVEPSKTYDGLVHIKSRYTNKYLVRWSPNHYWIT   79 (153)
T ss_dssp             CSEEEEEETTTTEEEEECCSSSTTTTBEEEEESS----TTCTTCCEEEEECSSSTTCEEEEETTTCCEEEESSTTCCBEE
T ss_pred             ccEEEEeccCCCeeEEEEecccccccceEecccc----cCCcceeEEEEeccCCCceEEEEeccCCceeeeCCCCceEEE
Confidence            55777877   48887  33   12223343222    23444455555543  56899999 79999966 44443 77


Q ss_pred             EeccCCCC---C---CceEEEEe-C---CceEEecc-CceeEE
Q psy2222         129 GRSDAVGP---L---EQWEPVFE-D---DNMALLGA-NQCFMS  160 (264)
Q Consensus       129 a~a~a~g~---~---E~f~iv~~-~---g~~alq~~-ng~fLs  160 (264)
                      |.++.+..   .   ..|.||.- +   ..+.||.. .|.|..
T Consensus        80 a~aD~~ded~S~~scTLF~Pv~~~d~n~~~lr~~hvq~g~~~~  122 (153)
T d1jlxa1          80 ASANEPDENKSNWACTLFKPLYVEEGNMKKVRLLHVQLGHYTQ  122 (153)
T ss_dssp             EEESSCCCCTTSTTCCCEEEEESSTTCSSEEEEEETTTTEECE
T ss_pred             ecCCCCccccCCCcceEEEEEEeccCCceEEEEEeeccCceEE
Confidence            77765543   2   67999985 3   56677664 344433

>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Cytolethal distending toxin subunit A
species: Haemophilus ducreyi [TaxId: 730]

Probab=88.45  E-value=1.3  Score=34.40  Aligned_cols=70  Identities=16%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             CCCeeeccccCCCCCCEEEEeCC-CcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCCeEEEEe-cCCeEEEEec
Q psy2222          47 YAGWTQVKHIKDIVGAISIEFGK-RTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDSKVAFKS-GFDKYLSIDK  123 (264)
Q Consensus        47 ~~~W~~~~~~~dI~Gp~~i~~~s-~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt~~~lKs-~~GkYLs~d~  123 (264)
                      .+-|-......+  |-..|+... |+||.+..+|....     .++.-++.|.|.+++..++.++|+. +.|+.|.++.
T Consensus        57 ~Q~W~~~~~~~~--g~~~i~N~~sg~CLd~~g~~v~q~-----~C~~~~~~Q~W~~~~~~~G~~~i~n~~sg~CLdv~~  128 (167)
T d1sr4a_          57 IRNWKMEPGKHR--EYFRFVNQSLGTCVEAYGNGLIHD-----ICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNP  128 (167)
T ss_dssp             GGCEEEEECSST--TCEEEEETTTCCEEEEETTEEEEE-----CCCTTCGGGCEEEEEBTTSCEEEEETTTCCEEEECS
T ss_pred             cceEEEEecCCC--CEEEEEECCCCcEEecCCCcEEEE-----ecCCCChHHeEEEEEecCceEEEEeccccEEEEecC
Confidence            356765443333  445566544 99999986664333     2333346799999999888899998 6799888865

>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Hemagglutinin component Ha1
species: Clostridium botulinum D phage [TaxId: 29342]

Probab=88.26  E-value=3.5  Score=30.08  Aligned_cols=114  Identities=12%  Similarity=0.146  Sum_probs=72.8

Q ss_pred             eCCCcEEEEcCCCceEeeccCCCCCCCCccccEEEEEecCC-eEEEEe-cCCeEEEEec-CCc-EEEeccCCCCCCceEE
Q psy2222          67 FGKRTFVSALDNGLFILGAIHEDKEGPSPEEIFTAILVNDS-KVAFKS-GFDKYLSIDK-NGR-VTGRSDAVGPLEQWEP  142 (264)
Q Consensus        67 ~~s~~yL~a~~~G~f~~~~~~~~~e~~~~~evf~~~~v~dt-~~~lKs-~~GkYLs~d~-~G~-v~a~a~a~g~~E~f~i  142 (264)
                      +.+++||....||.-...-+..    -++-|.|.++...+. .+.|++ +.+++|.+.. .|. |.--...-++.-.|.+
T Consensus        10 ~n~~k~l~~~~n~~~v~~w~~~----~~~nQ~W~~~~~~~~~~y~i~~~~~~~~l~~~~~~g~~v~~~~~~~~~~Q~W~i   85 (138)
T d1qxma2          10 LNSDRFLSKNLNSQIIVLWQWF----DSSRQKWIIEYNETKSAYTLKCQENNRYLTWIQNSNNYVETYQSTDSLIQYWNI   85 (138)
T ss_dssp             TCTTCEEEECTTSSBEEEECCC----CCGGGCEEEEEETTTTEEEEEETTTTEEEEECCSTTCBEEEECCCSSGGGCEEE
T ss_pred             eCCCEEEEEccCCceEEEECCC----CCcccCEEEEECCCcCEEEEEeCCCCCEEccccCCCcEEEEEcCCCChhcEEEE
Confidence            3458899888888433211111    235799999998875 688998 5778888754 343 4433344456677999


Q ss_pred             EEe---CCceEEecc--CceeEEEecCC----CeeEEecccCCCcceEEEE
Q psy2222         143 VFE---DDNMALLGA--NQCFMSVSEQD----DSIVATSRKAGKNEMVKLR  184 (264)
Q Consensus       143 v~~---~g~~alq~~--ng~fLs~~~~~----~~l~a~s~~~g~~e~~~iR  184 (264)
                      ...   +|.|.|...  .++.|.+.+..    ..|..-...-+++.+|+|.
T Consensus        86 ~~~~~~~g~y~i~~~~~s~~~Ldv~~~~~~nGt~v~~~~~~g~~nQ~W~l~  136 (138)
T d1qxma2          86 NYLDNDASKYILYNLQDTNRVLDVYNSQIANGTHVIVDSYHGNTNQQWIIN  136 (138)
T ss_dssp             EEETTEEEEEEEEETTCTTEEEEEGGGCCSTTCBEEEEECCCSGGGCEEEE
T ss_pred             eccccCCCcEEEEEecCCCccEEECCCCcCCCCEEEEECCCCCccceEEEE
Confidence            875   368888874  47788885432    2244333345778888874

>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]}

class: All beta proteins
fold: beta-Trefoil
superfamily: Ricin B-like lectins
family: Ricin B-like
domain: Agglutinin MOA, N-terminal domain
species: Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]

Probab=85.60  E-value=5.2  Score=29.29  Aligned_cols=90  Identities=12%  Similarity=0.211  Sum_probs=58.3

Q ss_pred             CccccEEEEEecCC--eEEEEe-cCCeEEEEecC----CcEE----EeccCCCCCCceEEEEe-CCc-eEEecc-CceeE
Q psy2222          94 SPEEIFTAILVNDS--KVAFKS-GFDKYLSIDKN----GRVT----GRSDAVGPLEQWEPVFE-DDN-MALLGA-NQCFM  159 (264)
Q Consensus        94 ~~~evf~~~~v~dt--~~~lKs-~~GkYLs~d~~----G~v~----a~a~a~g~~E~f~iv~~-~g~-~alq~~-ng~fL  159 (264)
                      .+.|.|++.++...  .|.|+. +.|++|.+...    |..+    +.....++...|.+++. +|. |.|+.. .|+.|
T Consensus        42 ~~nQ~W~~~~~~~~~~~y~i~n~~s~~~l~~~~~~~~~g~~v~~~~~~~~~~~~~Q~W~~~~~~~g~~y~i~n~~sg~~L  121 (154)
T d2ihoa1          42 NWHQLWLAEPIPNVADTFTLCNLFSGTYMDLYNGSSEAGTAVNGWQGTAFTTNPHQLWTIKKSSDGTSYKIQNYGSKTFV  121 (154)
T ss_dssp             CTTCEEEEEECTTSTTEEEEEETTTCCEEEEGGGCCSTTEEEEEECCCTTCCCGGGCEEEEECTTSSSEEEEETTTCCEE
T ss_pred             CcceEEEEEecCCcCceEEEEEcCCCeEEeccCCcCCCCcEEEEEeecccCCCcccEEEEccCCCcceEEEEEcCCCcEE
Confidence            35799999988753  799998 56999987543    3333    22334567889999987 464 788875 68899


Q ss_pred             EEecCC----CeeEE---ecccCCCcceEEE
Q psy2222         160 SVSEQD----DSIVA---TSRKAGKNEMVKL  183 (264)
Q Consensus       160 s~~~~~----~~l~a---~s~~~g~~e~~~i  183 (264)
                      .+....    ..|..   ....-+.+.+|.+
T Consensus       122 dv~~~~~~~gt~i~~w~~~~~~g~~~Q~W~f  152 (154)
T d2ihoa1         122 DLVNGDSSDGAKIAGWTGTWDEGNPHQKWYF  152 (154)
T ss_dssp             EEGGGCCSTTEEEEEECCCSSCCCGGGCEEE
T ss_pred             EcCCCCcCCCcEEEEEecccCCCCccceEEE
Confidence            885422    11222   2233456677765